Psyllid ID: psy1524

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590--
Protein Sequence
MSALKSGEIRKLRPSLHSQFFVSAENAGSQFLQPSLNFNRILNLVSASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMTQRPDGGRGADDRMSYRKGPQGVDKKADVGAGSTEVEFKGYGGLASLCNPWSCKHPQEPEHGNLVINFWVGFIYLKQDMTHILTEENYKANGPIAFLLNWEIPPIQSHVLGVREIAKLEPGFPVKEVS
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHccccccccccEEEEEEEEEEEccEEEEEEEcccccccccccccccEEEccccccccccEEEEccccccccccccccccccccccccccccccccHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEEccccccccccccccccccccHHccccccccccccccccccccccHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHcccccHHHHccccccccccccccccccccccccEEEccccccHHHcccccccHHHHHcccEEEEEEcccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEcccccccccccccccccEEEEEccccccccccccHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHccccccccHHEEEHHccccccccccccccccccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHHHcHHHcccccccccccEEEEcccEEEEEEEcccccccccccccccccccccccccccccEcccccHHHccEEEEEccccEEEEEEEccccccccccHHHHHHHccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccHHcEccHHHHHHHHHHHcccccHHHHHHcccccccccHHHHHHHHHHHccccEEEccHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccEEEEEEcccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHcccccccccHHccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccEEEcccccccccccccccccccccccccEEEEEHHHHHEHHHccHHHHcHHHccccccHEHEEccccccccHHHccHHHHHHcccccccEEcc
Coil and Loop (DISEMBL)
msalksgeirklrpslhsqffvsaenagsqflqpslnfnRILNLVSAssenesgsseghdtrHKVVvmggpkvgksSIIHRFLyntfspkyKRTIEEMhhedfsmngvHLKLDILdtsgeqsgkglkcgavlwgpkkwgldKVCLRRAlnqrpmayktdvqlpskltslamtcstnefpamralsissADAFILVYaiddpnsfeEIRLIRDHIfetkastavpivvvgnksdladenrqvdltggpfqtylsglpdsvcahqisgtpdqvpydttesVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNlspalrrrrrqslppvqhspnpvpydtteSVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNlspalrrrrrqslppvqhspnpslkskgwvneQFAWRHYYWYITNDGIeklrgvlnipdeivpstlkrqarttdaskvprqmtqrpdggrgaddrmsyrkgpqgvdkkadvgagstevefkgygglaslcnpwsckhpqepehgnlVINFWVGFIYLKQDMTHILTeenykangpiafllnweippiqshvlgvreiaklepgfpvkevs
Flexible Loop (DISEMBL)
msalksgeirklrpsLHSQFFVSAENAGSQFLQPSLNFNRILNLVSASSenesgsseghdtrhkVVVMGGpkvgkssiiHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGavlwgpkkwgLDKVCLRRALNqrpmayktdvqlpsKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIfetkastavpiVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEasakdntnITQVFKELLVQAKVKYnlspalrrrrrqslppvqhspnpvpydtTESVVQVDWENGFVEasakdntnITQVFKELLVQAKVKYNlspalrrrrrqslppvqhspnpslkskgwVNEQFAWRHYYWYITNDGIEKLRGVLNIPDeivpstlkrqarttdaskvprqmtqrpdggrgaddrmsyrkgpqgvdkkadvgAGSTEVEFKGYGGLASLCNPWSCKHPQEPEHGNLVINFWVGFIYLKQDMTHILTEENYKANGPIAFLLNWEIPPIQSHVLGVREIAklepgfpvkevs
Low Complexity Region (SEG)
MSALKSGEIRKLRPSLHSQFFVSAENAGSQFLQPSLNFNRILNLVsassenesgssegHDTRHkvvvmggpkvgkSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMTQRPDGGRGADDRMSYRKGPQGVDKKADVGAGSTEVEFKGYGGLASLCNPWSCKHPQEPEHGNLVINFWVGFIYLKQDMTHILTEENYKANGPIAFLLNWEIPPIQSHVLGVREIAKLEPGFPVKEVS
Disordered region (IsUnstruct)
*******************FFV********FLQPSLNFNRILNL********************VVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNL***************************ESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNL**************************GWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIV******************************************************EVEFKGYGGLASLCNPWSCKHPQEPEHGNLVINFWVGFIYLKQDMTHILTEENYKANGPIAFLLNWEIPPIQSHVLGVREIAKL**********
Disordered Region (DISOPRED)
***********LRPSLHSQFFVSAENAGSQFL*******************************KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE*********AVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELL**************************************************ASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQS********************QFAWRHYYWYITNDGIEKLRGVLNIPDEIVPS***************************************************TEVEFKGYGG******************GNLVINFWVGFIYLKQDMTHILTEENYKANGPIAFLLNWEIPPIQSHVLGVREIAKLEPGFPV****
Disordered Region (DISEMBL)
********IRKLRPSLHSQFFVSAENAGSQFLQPSLNFNRILNLVSA*************TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRR*****************SKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLK****************************MSYRKGPQGVDKKADVGAGSTEVEFKGYGGLASLCNPWSCKHPQEPEHGNLVINFWVGFIYLKQDMTHILTEENYKANGPIAFLLNWEIPPIQSHVLGVREIAKLEPGFPVKEVS
Disordered Region (DISPRO)
********I*KLRPSLHSQFFVSAENAGSQFLQP*L*F********************HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKY****************************************FVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLK**************************************D**************KGYGGLASLCNPWSCKHPQEPEHGNLVINFWVGFIYLKQDMTHILTEENYKANGPIAFLLNWEIPPIQSHVLGVREIAKLEPGFPVKE**
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSALKSGEIRKLRPSLHSQFFVSAENAGSQFLQPSLNFNRILNLVSASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMTQRPDGGRGADDRMSYRKGPQGVDKKADVGAGSTEVEFKGYGGLASLCNPWSCKHPQEPEHGNLVINFWVGFIYLKQDMTHILTEENYKANGPIAFLLNWEIPPIQSHVLGVREIAKLEPGFPVKEVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	592	2.2.26 [Sep-21-2011]
Q9VWG3	160	40S ribosomal protein S10	no	N/A	0.221	0.818	0.451	5e-25
Q962R9	158	40S ribosomal protein S10	N/A	N/A	0.163	0.613	0.567	9e-25
Q9VB14	163	40S ribosomal protein S10	no	N/A	0.234	0.852	0.425	1e-21
O77302	156	40S ribosomal protein S10	N/A	N/A	0.163	0.621	0.504	3e-21
Q96D21	266	GTP-binding protein Rhes	no	N/A	0.297	0.661	0.275	1e-19
P63326	165	40S ribosomal protein S10	yes	N/A	0.158	0.569	0.515	1e-19
P63325	165	40S ribosomal protein S10	yes	N/A	0.158	0.569	0.515	1e-19
P46783	165	40S ribosomal protein S10	no	N/A	0.158	0.569	0.515	2e-19
Q3T0F4	165	40S ribosomal protein S10	no	N/A	0.158	0.569	0.515	2e-19
P63033	266	GTP-binding protein Rhes	no	N/A	0.297	0.661	0.267	3e-18

>sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b OS=Drosophila melanogaster GN=RpS10b PE=1 SV=2

 Score =  116 bits (291), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/155 (45%), Positives = 90/155 (58%), Gaps = 24/155 (15%)

Query: 369 VFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPN-------PSLKSKGWVNEQFAWRHY 421
           +FKE ++ AK  ++          Q  P ++  PN        SL S+G V EQFAWRHY
Sbjct: 15  LFKEGVIVAKKDFHA---------QKHPELESIPNLHVIKAMQSLHSRGLVKEQFAWRHY 65

Query: 422 YWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMTQRP----DGGRGADDR 477
           YWY+TN+GIE+LR  L++P EIVPSTLKR AR+      PR     P    D  +  +DR
Sbjct: 66  YWYLTNEGIEELRSYLHLPPEIVPSTLKRPARSETVR--PRPAVGGPRGPGDASKTGEDR 123

Query: 478 MSYRKGP--QGVDKKADVGAGSTEVEFKGYGGLAS 510
            +YR+ P   GVDKK DVG G+ EVEF+G  G  S
Sbjct: 124 SAYRRAPGGSGVDKKGDVGPGAGEVEFRGGFGRGS 158

Drosophila melanogaster (taxid: 7227)

>sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10 OS=Spodoptera frugiperda GN=RpS10 PE=2 SV=1

 Score =  115 bits (288), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 59/104 (56%), Positives = 73/104 (70%), Gaps = 7/104 (6%)

Query: 405 SLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQM 464
           SLKS+G+V EQFAWRH+YWY+TN+GIE LR  L++P EIVP+TLKR  R   A  V R  
Sbjct: 49  SLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR---AETVRRGA 105

Query: 465 TQRPDG-GRGADDRMSYRKG---PQGVDKKADVGAGSTEVEFKG 504
             RPD   R A+DR +YR+    P   DKKADVG GS ++EF+G
Sbjct: 106 VGRPDAPARSAEDRSAYRRAPTTPAAHDKKADVGPGSADLEFRG 149

Spodoptera frugiperda (taxid: 7108)

>sp|Q9VB14|RS10A_DROME 40S ribosomal protein S10a OS=Drosophila melanogaster GN=RpS10a PE=2 SV=1

 Score =  105 bits (261), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/148 (42%), Positives = 85/148 (57%), Gaps = 9/148 (6%)

Query: 369 VFKELLVQAKVKYNLSPALRRRRRQSLPPVQ-HSPNPSLKSKGWVNEQFAWRHYYWYITN 427
           +FKE ++ AK     SP  +      +P +Q      SL S+GWV EQFAWRH+YW +TN
Sbjct: 15  LFKEGVLVAKKD---SPIQKHSELDKIPNLQVIKVMQSLNSRGWVKEQFAWRHFYWLLTN 71

Query: 428 DGIEKLRGVLNIPDEIVPSTLKRQARTT---DASKVPRQMTQRPDGGRGADDRMSYRKGP 484
           +GIE+LR  L++P EIVPSTL +  R+                    +  DDR +YR+GP
Sbjct: 72  EGIEELRRYLHLPPEIVPSTLTQTTRSNAVRPRGGPGGPGGGFGGASKTDDDRSNYRRGP 131

Query: 485 --QGVDKKADVGAGSTEVEFKGYGGLAS 510
              G+DKK DVGAG+  VE++G  G AS
Sbjct: 132 GAYGMDKKGDVGAGTGRVEYRGGFGRAS 159

Drosophila melanogaster (taxid: 7227)

>sp|O77302|RS10_LUMRU 40S ribosomal protein S10 OS=Lumbricus rubellus GN=RPS10 PE=2 SV=1

 Score =  103 bits (258), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/101 (50%), Positives = 67/101 (66%), Gaps = 4/101 (3%)

Query: 405 SLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQM 464
           SL S+G+V EQF WRHYYWY+ N+GI+ LR  L++P EIVP+TLKRQ R   A   P++ 
Sbjct: 48  SLVSRGYVKEQFCWRHYYWYLQNEGIQYLRDFLHLPPEIVPATLKRQTRPEAARPRPKEG 107

Query: 465 TQRPDGGRGADDRMSYRKGPQGVDKKADVGAGS-TEVEFKG 504
             R   G   +DR  YR+G  G DKK + GAG+ T  +F+G
Sbjct: 108 APRAQVG---EDRAGYRRGFGGSDKKGEAGAGADTNFQFRG 145

Lumbricus rubellus (taxid: 35632)

>sp|Q96D21|RHES_HUMAN GTP-binding protein Rhes OS=Homo sapiens GN=RASD2 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 111/269 (41%), Gaps = 93/269 (34%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS 122
           +++VV+G  +VGKSSI+ RFL   F  +Y  TIE+ H                       
Sbjct: 20  YRMVVLGASRVGKSSIVSRFLNGRFEDQYTPTIEDFH----------------------- 56

Query: 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR 182
                                  R+  N R   Y+ D+           T   + FPAMR
Sbjct: 57  -----------------------RKVYNIRGDMYQLDI---------LDTSGNHPFPAMR 84

Query: 183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE--------TKASTAVPIVVVGNKSDL 234
            LSI + D FILV+++D+  SF+E++ ++  I E        TK +  +P+V+ GNK+D 
Sbjct: 85  RLSILTGDVFILVFSLDNRESFDEVKRLQKQILEVKSCLKNKTKEAAELPMVICGNKNDH 144

Query: 235 ADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294
            +  R                              QVP    E +V  D    + E SAK
Sbjct: 145 GELCR------------------------------QVPTTEAELLVSGDENCAYFEVSAK 174

Query: 295 DNTNITQVFKELLVQAKVKYNLSPALRRR 323
            NTN+ ++F  L   AK+ + +SPAL R+
Sbjct: 175 KNTNVDEMFYVLFSMAKLPHEMSPALHRK 203

GTPase signaling protein that binds to and hydrolyzes GTP. Regulates signaling pathways involving G-proteins-coupled receptor and heterotrimeric proteins such as GNB1, GNB2 and GNB3. May be involved in selected striatal competencies, mainly locomotor activity and motor coordination.

Homo sapiens (taxid: 9606)

>sp|P63326|RS10_RAT 40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 65/97 (67%), Gaps = 3/97 (3%)

Query: 405 SLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQM 464
           SLKS+G+V EQFAWRH+YWY+TN+GI+ LR  L++P EIVP+TL+R    T   +     
Sbjct: 51  SLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGPE 110

Query: 465 TQRPDG-GRGADDRMSYRKG--PQGVDKKADVGAGST 498
            +RP    RG  DR +YR+   P G DKKA+ GAGS 
Sbjct: 111 GERPARFTRGEADRDTYRRSAVPPGADKKAEAGAGSA 147

Component of the 40S ribosomal subunit.

Rattus norvegicus (taxid: 10116)

>sp|P63325|RS10_MOUSE 40S ribosomal protein S10 OS=Mus musculus GN=Rps10 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 65/97 (67%), Gaps = 3/97 (3%)

Query: 405 SLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQM 464
           SLKS+G+V EQFAWRH+YWY+TN+GI+ LR  L++P EIVP+TL+R    T   +     
Sbjct: 51  SLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGPE 110

Query: 465 TQRPDG-GRGADDRMSYRKG--PQGVDKKADVGAGST 498
            +RP    RG  DR +YR+   P G DKKA+ GAGS 
Sbjct: 111 GERPARFTRGEADRDTYRRSAVPPGADKKAEAGAGSA 147

Component of the 40S ribosomal subunit.

Mus musculus (taxid: 10090)

>sp|P46783|RS10_HUMAN 40S ribosomal protein S10 OS=Homo sapiens GN=RPS10 PE=1 SV=1

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 65/97 (67%), Gaps = 3/97 (3%)

Query: 405 SLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQM 464
           SLKS+G+V EQFAWRH+YWY+TN+GI+ LR  L++P EIVP+TL+R    T   +     
Sbjct: 51  SLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLE 110

Query: 465 TQRPDG-GRGADDRMSYRKG--PQGVDKKADVGAGST 498
            +RP    RG  DR +YR+   P G DKKA+ GAGS 
Sbjct: 111 GERPARLTRGEADRDTYRRSAVPPGADKKAEAGAGSA 147

Component of the 40S ribosomal subunit.

Homo sapiens (taxid: 9606)

>sp|Q3T0F4|RS10_BOVIN 40S ribosomal protein S10 OS=Bos taurus GN=RPS10 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 65/97 (67%), Gaps = 3/97 (3%)

Query: 405 SLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQM 464
           SLKS+G+V EQFAWRH+YWY+TN+GI+ LR  L++P EIVP+TL+R    T   +     
Sbjct: 51  SLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLE 110

Query: 465 TQRPDG-GRGADDRMSYRKG--PQGVDKKADVGAGST 498
            +RP    RG  DR +YR+   P G DKKA+ GAGS 
Sbjct: 111 GERPARLTRGEADRDTYRRSAVPPGADKKAEAGAGSA 147

Component of the 40S ribosomal subunit.

Bos taurus (taxid: 9913)

>sp|P63033|RHES_RAT GTP-binding protein Rhes OS=Rattus norvegicus GN=Rasd2 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 109/269 (40%), Gaps = 93/269 (34%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS 122
           +++VV+G  +VGKSSI+ RFL   F  +Y  TIE+ H                       
Sbjct: 20  YRMVVLGASRVGKSSIVSRFLNGRFEDQYTPTIEDFH----------------------- 56

Query: 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR 182
                                  R+  N     Y+ D+           T   + FPAMR
Sbjct: 57  -----------------------RKVYNIHGDMYQLDI---------LDTSGNHPFPAMR 84

Query: 183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE--------TKASTAVPIVVVGNKSDL 234
            LSI + D FILV+++D   SF+E++ ++  I E        TK +  +P+V+ GNK+D 
Sbjct: 85  RLSILTGDVFILVFSLDSRESFDEVKRLQKQILEVKSCLKNKTKEAAELPMVICGNKNDH 144

Query: 235 ADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294
           ++  RQV                              P    E +V  D    + E SAK
Sbjct: 145 SELCRQV------------------------------PAMEAELLVSGDENCAYFEVSAK 174

Query: 295 DNTNITQVFKELLVQAKVKYNLSPALRRR 323
            NTN+ ++F  L   AK+ + +SPAL  +
Sbjct: 175 KNTNVNEMFYVLFSMAKLPHEMSPALHHK 203

GTPase signaling protein that binds to and hydrolyzes GTP. Regulates signaling pathways involving G-proteins-coupled receptor and heterotrimeric proteins such as GNB1, GNB2 and GNB3. May be involved in selected striatal competencies, mainly locomotor activity and motor coordination.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	592
357619980	225	hypothetical protein KGM_10970 [Danaus p	0.300	0.791	0.522	6e-61
110671454	159	putative ribosomal protein S10e [Diaphor	0.185	0.691	0.945	2e-54
328704192	299	PREDICTED: GTP-binding protein Rhes-like	0.324	0.642	0.460	5e-54
170030104	258	MRAS2 [Culex quinquefasciatus] gi|167865	0.317	0.728	0.455	4e-53
383862083	272	PREDICTED: GTP-binding protein Rhes-like	0.334	0.727	0.425	4e-51
195394101	309	GJ18652 [Drosophila virilis] gi|19415019	0.315	0.605	0.444	2e-45
195131509	317	GI15797 [Drosophila mojavensis] gi|19390	0.315	0.589	0.440	3e-45
198468657	314	GA12239 [Drosophila pseudoobscura pseudo	0.315	0.595	0.440	4e-45
312372365	325	hypothetical protein AND_20261 [Anophele	0.317	0.578	0.425	1e-44
194764238	314	GF20817 [Drosophila ananassae] gi|190619	0.315	0.595	0.448	3e-44

>gi|357619980|gb|EHJ72334.1| hypothetical protein KGM_10970 [Danaus plexippus]

 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 137/262 (52%), Positives = 153/262 (58%), Gaps = 84/262 (32%)

Query: 68  MGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLK 127
           MG  KVGKSS+I +FLYNTFSPKYKRTIEEMHH DF++ GV L LDILDTSG        
Sbjct: 1   MGAAKVGKSSLICQFLYNTFSPKYKRTIEEMHHGDFNVAGVRLTLDILDTSG-------- 52

Query: 128 CGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS 187
                                      AY+                    FPAMR LS+ 
Sbjct: 53  ---------------------------AYE--------------------FPAMRVLSMQ 65

Query: 188 SADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGP 247
           SADAFILVY + D NSF E+R +RD I ETK STAVPIVVVGNK DLA+   +       
Sbjct: 66  SADAFILVYDVTDANSFAEVRALRDQIHETKESTAVPIVVVGNKVDLAESGER------- 118

Query: 248 FQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELL 307
                                 +V + TTESVV VDWENGFVEASAKDN N++Q+FKELL
Sbjct: 119 ----------------------EVEFHTTESVVTVDWENGFVEASAKDNINVSQIFKELL 156

Query: 308 VQAKVKYNLSPALRRRRRQSLP 329
           VQAKVKYNLSPALRRRRRQSLP
Sbjct: 157 VQAKVKYNLSPALRRRRRQSLP 178

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110671454|gb|ABG81978.1| putative ribosomal protein S10e [Diaphorina citri]

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 104/110 (94%), Positives = 104/110 (94%)

Query: 405 SLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQM 464
           SLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQM
Sbjct: 48  SLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQM 107

Query: 465 TQRPDGGRGADDRMSYRKGPQGVDKKADVGAGSTEVEFKGYGGLASLCNP 514
           TQRPDGGRGADDRMSYRKGPQGVDKKADVGAGSTEVEFKGYGG      P
Sbjct: 108 TQRPDGGRGADDRMSYRKGPQGVDKKADVGAGSTEVEFKGYGGFGRGKAP 157

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328704192|ref|XP_001943267.2| PREDICTED: GTP-binding protein Rhes-like [Acyrthosiphon pisum]

 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 129/280 (46%), Positives = 158/280 (56%), Gaps = 88/280 (31%)

Query: 53  SGSSEGHD-TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLK 111
           S SS+  D TRHK+VVMG  +VGKSS+I +FLY  FS KYKRT+EEMHH  F+++GV + 
Sbjct: 54  SSSSDPADVTRHKIVVMGAARVGKSSLITQFLYRKFSSKYKRTVEEMHHGQFTVDGVKID 113

Query: 112 LDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAM 171
           LDILDTSG                                   AY+              
Sbjct: 114 LDILDTSG-----------------------------------AYE-------------- 124

Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
                 FPAMRALSISSADAF+LVY++ DP+SF++   IRD I ETK +  VPIVVVGNK
Sbjct: 125 ------FPAMRALSISSADAFVLVYSVTDPDSFQQAAAIRDQIIETKHTADVPIVVVGNK 178

Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
            DLA+ +R                              +V Y+ T  +V+VDWENGFVE 
Sbjct: 179 LDLANSDR------------------------------KVSYEETSCLVEVDWENGFVET 208

Query: 292 SAKDNTNITQVFKELLVQAKVKYNLSPALRRR--RRQSLP 329
           SAKDN N+ +VFKELL QAK+KY+L P+LRR   RRQSLP
Sbjct: 209 SAKDNINVGEVFKELLNQAKIKYDLGPSLRRNSARRQSLP 248

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170030104|ref|XP_001842930.1| MRAS2 [Culex quinquefasciatus] gi|167865936|gb|EDS29319.1| MRAS2 [Culex quinquefasciatus]

 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 123/270 (45%), Positives = 153/270 (56%), Gaps = 82/270 (30%)

Query: 60  DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
           + RHK+VVMG  KVGKSS+I +FLY+TFSPKYKRT+EEMHH  FS+ GV+L LDILDTSG
Sbjct: 19  NVRHKIVVMGAAKVGKSSLITQFLYSTFSPKYKRTVEEMHHGHFSVGGVNLTLDILDTSG 78

Query: 120 EQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFP 179
                 ++                                          A++ S+ E  
Sbjct: 79  SYEFPAMR------------------------------------------ALSISSAE-- 94

Query: 180 AMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENR 239
                      AFILVY I D  +FEE++ IR+ I E K++TAVPIV+VGNK+DLAD++ 
Sbjct: 95  -----------AFILVYDITDSGTFEEVKAIREQIHEIKSTTAVPIVIVGNKTDLADDDD 143

Query: 240 QVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299
            +                            QV   TTES++ VDWENGFVEASAK N N+
Sbjct: 144 DI---------------------------RQVSCGTTESMITVDWENGFVEASAKLNRNV 176

Query: 300 TQVFKELLVQAKVKYNLSPALRRRRRQSLP 329
           +Q+FKELL QAK+ YNLSPALRRRRRQSLP
Sbjct: 177 SQIFKELLAQAKITYNLSPALRRRRRQSLP 206

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862083|ref|XP_003706513.1| PREDICTED: GTP-binding protein Rhes-like [Megachile rotundata]

 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 122/287 (42%), Positives = 156/287 (54%), Gaps = 89/287 (31%)

Query: 49  SENESGSSEGHDT--RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMN 106
           SE++SG  +  D   R+K+VVMG  KVGKS+II++FLYNTF+PKYKRT+EEMHH DF+++
Sbjct: 37  SESDSGGGKQTDNSIRYKIVVMGAAKVGKSAIINQFLYNTFTPKYKRTVEEMHHGDFNVS 96

Query: 107 GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKL 166
           G+HL L+ILDTSG                                         + P+ +
Sbjct: 97  GIHLTLNILDTSG---------------------------------------SYEFPA-M 116

Query: 167 TSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIV 226
             L++ C               ADAFILVY + D N+F E++ +R  I   K   AVPIV
Sbjct: 117 RDLSIKC---------------ADAFILVYDVHDANTFLEVKTLRSEILSKKG--AVPIV 159

Query: 227 VVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWEN 286
           +VGNK DL +  ++VD                               ++T  +V   W N
Sbjct: 160 IVGNKVDLIETEQEVDT------------------------------ESTRELVTTKWNN 189

Query: 287 GFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQH 333
           GFVE SAK+N NITQVFKELL QAK+KYNLSP LRRRRRQSLPP QH
Sbjct: 190 GFVEVSAKENLNITQVFKELLTQAKMKYNLSPELRRRRRQSLPPPQH 236

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195394101|ref|XP_002055684.1| GJ18652 [Drosophila virilis] gi|194150194|gb|EDW65885.1| GJ18652 [Drosophila virilis]

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/270 (44%), Positives = 141/270 (52%), Gaps = 83/270 (30%)

Query: 60  DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
           + RHK+VVMG  KVGK+SII +FLYNTF+ KYKRTIEEMH  +FS+ GV L LDILDT+G
Sbjct: 45  NARHKIVVMGAAKVGKTSIITQFLYNTFTTKYKRTIEEMHQGNFSIAGVSLTLDILDTAG 104

Query: 120 EQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFP 179
                 ++  ++                                          S + F 
Sbjct: 105 SYEFPAMRALSI-----------------------------------------SSADAF- 122

Query: 180 AMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENR 239
            +    ++ A  F  V AI            RD I ETKA+TAVPIVVVGNK DL  E+ 
Sbjct: 123 -ILVYDVTDASTFEEVRAI------------RDQIHETKATTAVPIVVVGNKVDLLAED- 168

Query: 240 QVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299
                                     G   +V Y TTESVV VDWENGFVEASA +N NI
Sbjct: 169 --------------------------GELREVEYATTESVVTVDWENGFVEASAANNDNI 202

Query: 300 TQVFKELLVQAKVKYNLSPALRRRRRQSLP 329
           TQVFKELL QAK+ YNLSPAL RRRRQSLP
Sbjct: 203 TQVFKELLAQAKITYNLSPAL-RRRRQSLP 231

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195131509|ref|XP_002010193.1| GI15797 [Drosophila mojavensis] gi|193908643|gb|EDW07510.1| GI15797 [Drosophila mojavensis]

 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 119/270 (44%), Positives = 142/270 (52%), Gaps = 83/270 (30%)

Query: 60  DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
           + RHK+VVMG  KVGK+SII +FLYNTF+ KYKRTIEEMH  +FS+ GV L LDILDT+G
Sbjct: 45  NARHKIVVMGAAKVGKTSIITQFLYNTFTTKYKRTIEEMHQGNFSIAGVSLTLDILDTAG 104

Query: 120 EQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFP 179
                 ++  ++                                          S + F 
Sbjct: 105 SYEFPAMRALSI-----------------------------------------SSADAF- 122

Query: 180 AMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENR 239
            +    ++ A  F  V AI            RD I ETKA+TAVPIVVVGNK DL  E+ 
Sbjct: 123 -ILVYDVTDASTFEEVRAI------------RDQIHETKATTAVPIVVVGNKVDLLAEDS 169

Query: 240 QVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299
           ++                            +V Y TTESVV VDWENGFVEASA +N NI
Sbjct: 170 EL---------------------------REVEYATTESVVTVDWENGFVEASAANNENI 202

Query: 300 TQVFKELLVQAKVKYNLSPALRRRRRQSLP 329
           TQVFKELL QAK+ YNLSPAL RRRRQSLP
Sbjct: 203 TQVFKELLAQAKITYNLSPAL-RRRRQSLP 231

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198468657|ref|XP_001354779.2| GA12239 [Drosophila pseudoobscura pseudoobscura] gi|198146509|gb|EAL31834.2| GA12239 [Drosophila pseudoobscura pseudoobscura]

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 119/270 (44%), Positives = 141/270 (52%), Gaps = 83/270 (30%)

Query: 60  DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
           + RHK+VVMG  KVGK+SII +FLYNTFSPKYKRTIEEMH  +FS+ GV L LDILDT+G
Sbjct: 45  NARHKIVVMGSAKVGKTSIITQFLYNTFSPKYKRTIEEMHQGNFSIAGVSLTLDILDTAG 104

Query: 120 EQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFP 179
                 ++  ++                                          S + F 
Sbjct: 105 SYEFPAMRALSI-----------------------------------------SSADAF- 122

Query: 180 AMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENR 239
            +    ++ +  F  V AI            RD I ETKA+TAVPIVVVGNK DL  + +
Sbjct: 123 -ILVYDVTDSSTFEEVRAI------------RDQIHETKATTAVPIVVVGNKIDLLADGQ 169

Query: 240 QVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299
                                      T  +V Y TTESVV VDWENGFVEASA  N N+
Sbjct: 170 ---------------------------TEREVEYATTESVVTVDWENGFVEASAASNENV 202

Query: 300 TQVFKELLVQAKVKYNLSPALRRRRRQSLP 329
           TQVFKELL QAK+ YNLSPAL RRRRQSLP
Sbjct: 203 TQVFKELLTQAKITYNLSPAL-RRRRQSLP 231

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312372365|gb|EFR20345.1| hypothetical protein AND_20261 [Anopheles darlingi]

 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/270 (42%), Positives = 147/270 (54%), Gaps = 82/270 (30%)

Query: 60  DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
           + RHK+V+MG  KVGKSS+I +FLY++FSPKYKRT+EEMHH  FS+ GV+L LDILDTSG
Sbjct: 67  NVRHKIVMMGAAKVGKSSLITQFLYSSFSPKYKRTVEEMHHGHFSVGGVNLTLDILDTSG 126

Query: 120 EQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFP 179
                 ++  ++                                          S + F 
Sbjct: 127 SYEFPAMRALSI-----------------------------------------SSADAF- 144

Query: 180 AMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENR 239
            +    ++ +  F  V AI      E+I  I+       ++TAVPIVVVGNK+DL++E+ 
Sbjct: 145 -ILVYDVTDSGTFEEVKAIR-----EQIHEIK-------STTAVPIVVVGNKTDLSEEDE 191

Query: 240 QVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299
            +                            QV  DTTES+V VDWENGFVEASAK N N+
Sbjct: 192 DL---------------------------RQVARDTTESLVTVDWENGFVEASAKLNRNV 224

Query: 300 TQVFKELLVQAKVKYNLSPALRRRRRQSLP 329
           TQ+FKELLVQAK+ YNLSPALRRRRRQSLP
Sbjct: 225 TQIFKELLVQAKITYNLSPALRRRRRQSLP 254

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194764238|ref|XP_001964237.1| GF20817 [Drosophila ananassae] gi|190619162|gb|EDV34686.1| GF20817 [Drosophila ananassae]

 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/270 (44%), Positives = 140/270 (51%), Gaps = 83/270 (30%)

Query: 60  DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
           + RHK+VVMG  KVGK+SII +FLYNTFS KYKRTIEEMH  +FS+ GV L LDILDT+G
Sbjct: 45  NARHKIVVMGSAKVGKTSIITQFLYNTFSTKYKRTIEEMHQGNFSIAGVSLTLDILDTAG 104

Query: 120 EQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFP 179
                 ++  ++                                          S + F 
Sbjct: 105 SYEFPAMRALSI-----------------------------------------SSADAF- 122

Query: 180 AMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENR 239
            +    ++ A  F  V AI            RD I ETKA+TAVPIVVVGNK DL     
Sbjct: 123 -ILVYDVTDATTFEEVRAI------------RDQIHETKATTAVPIVVVGNKIDL----- 164

Query: 240 QVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299
              L  G                    T  +V Y TTESVV VDWENGFVEASA  N N+
Sbjct: 165 ---LADGE-------------------TEREVEYATTESVVTVDWENGFVEASAAINENV 202

Query: 300 TQVFKELLVQAKVKYNLSPALRRRRRQSLP 329
           TQVFKELL QAK+ YNLSPAL RRRRQSLP
Sbjct: 203 TQVFKELLAQAKITYNLSPAL-RRRRQSLP 231

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	592
FB|FBgn0040370	306	CG13375 [Drosophila melanogast	0.104	0.202	0.793	4.9e-56
UNIPROTKB|F1P3K5	208	RAP2B "Uncharacterized protein	0.116	0.331	0.542	1.7e-39
ZFIN|ZDB-GENE-060818-9	211	zgc:152698 "zgc:152698" [Danio	0.116	0.327	0.478	2e-31
FB|FBgn0261593	160	RpS10b "Ribosomal protein S10b	0.234	0.868	0.469	4.4e-26
ZFIN|ZDB-GENE-050506-133	208	zgc:153845 "zgc:153845" [Danio	0.126	0.360	0.5	6.2e-26
FB|FBgn0027494	163	RpS10a "Ribosomal protein S10a	0.231	0.840	0.466	2e-25
ZFIN|ZDB-GENE-040426-1481	166	rps10 "ribosomal protein S10"	0.226	0.807	0.447	6.6e-23
UNIPROTKB|Q3T0F4	165	RPS10 "40S ribosomal protein S	0.224	0.806	0.440	3e-22
UNIPROTKB|P46783	165	RPS10 "40S ribosomal protein S	0.224	0.806	0.440	3e-22
UNIPROTKB|F1RZ28	165	RPS10 "Uncharacterized protein	0.224	0.806	0.440	3e-22

FB|FBgn0040370 CG13375 [Drosophila melanogaster (taxid:7227)]

 Score = 239 (89.2 bits), Expect = 4.9e-56, Sum P(3) = 4.9e-56
 Identities = 50/63 (79%), Positives = 52/63 (82%)

Query:   267 TPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQ 326
             T  +V Y TTESVV VDWENGFVEASA  N NITQVFKELL QAK+ YNLSPALRRRR Q
Sbjct:   170 TEREVEYATTESVVTVDWENGFVEASASSNENITQVFKELLAQAKITYNLSPALRRRR-Q 228

Query:   327 SLP 329
             SLP
Sbjct:   229 SLP 231

GO:0003924 "GTPase activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|F1P3K5 RAP2B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 177 (67.4 bits), Expect = 1.7e-39, Sum P(3) = 1.7e-39
 Identities = 38/70 (54%), Positives = 47/70 (67%)

Query:   172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
             T  +  FPAMR LSI ++DAF LVYA+DD  SFE I+ +R+ I E K     PIVVVGNK
Sbjct:    65 TSGSYSFPAMRKLSIQNSDAFALVYAVDDAESFESIKSLREEILEVKEDKFPPIVVVGNK 124

Query:   232 SDLADENRQV 241
             ++   E RQV
Sbjct:   125 AESGGE-RQV 133

GO:0003924 "GTPase activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

ZFIN|ZDB-GENE-060818-9 zgc:152698 "zgc:152698" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 2.0e-31, Sum P(3) = 2.0e-31
 Identities = 33/69 (47%), Positives = 45/69 (65%)

Query:   172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
             T  +  FPAMRAL I + DAF LVYA D+P+S EE++ +R+ I E K  +   I V+ NK
Sbjct:    65 TSGSYPFPAMRALCIRTGDAFALVYAADEPDSLEEVQRLREEILELKGESFTGITVIENK 124

Query:   232 SDLADENRQ 240
             +DL   +RQ
Sbjct:   125 ADLCSRSRQ 133

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0261593 RpS10b "Ribosomal protein S10b" [Drosophila melanogaster (taxid:7227)]

 Score = 301 (111.0 bits), Expect = 4.4e-26, P = 4.4e-26
 Identities = 69/147 (46%), Positives = 91/147 (61%)

Query:   369 VFKELLVQAKVKYNLSPALRRRRRQSLPPVQH-SPNPSLKSKGWVNEQFAWRHYYWYITN 427
             +FKE ++ AK  ++   A +    +S+P +       SL S+G V EQFAWRHYYWY+TN
Sbjct:    15 LFKEGVIVAKKDFH---AQKHPELESIPNLHVIKAMQSLHSRGLVKEQFAWRHYYWYLTN 71

Query:   428 DGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMTQR-P-DGGRGADDRMSYRKGP- 484
             +GIE+LR  L++P EIVPSTLKR AR+      P     R P D  +  +DR +YR+ P 
Sbjct:    72 EGIEELRSYLHLPPEIVPSTLKRPARSETVRPRPAVGGPRGPGDASKTGEDRSAYRRAPG 131

Query:   485 -QGVDKKADVGAGSTEVEFKGYGGLAS 510
               GVDKK DVG G+ EVEF+G  G  S
Sbjct:   132 GSGVDKKGDVGPGAGEVEFRGGFGRGS 158

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0005840 "ribosome" evidence=IDA

GO:0006412 "translation" evidence=IC

GO:0005875 "microtubule associated complex" evidence=IDA

ZFIN|ZDB-GENE-050506-133 zgc:153845 "zgc:153845" [Danio rerio (taxid:7955)]

 Score = 173 (66.0 bits), Expect = 6.2e-26, Sum P(2) = 6.2e-26
 Identities = 38/76 (50%), Positives = 46/76 (60%)

Query:   165 KLTSLAM-TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV 223
             K+T   M T  +  FPAMR LSI + DAF LVY++DDP S E +  +R+ I E K     
Sbjct:    57 KVTINIMDTSGSYSFPAMRKLSIQNGDAFALVYSVDDPESLEVVNRLREEILEVKEDKFT 116

Query:   224 PIVVVGNKSDLADENR 239
             PIVVVGNK D   E R
Sbjct:   117 PIVVVGNKKDRLIERR 132

GO:0005525 "GTP binding" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0027494 RpS10a "Ribosomal protein S10a" [Drosophila melanogaster (taxid:7227)]

 Score = 295 (108.9 bits), Expect = 2.0e-25, P = 2.0e-25
 Identities = 70/150 (46%), Positives = 93/150 (62%)

Query:   369 VFKELLVQAKVKYNLSPALRRRRRQSLPPVQH-SPNPSLKSKGWVNEQFAWRHYYWYITN 427
             +FKE ++ AK     SP  +      +P +Q      SL S+GWV EQFAWRH+YW +TN
Sbjct:    15 LFKEGVLVAKKD---SPIQKHSELDKIPNLQVIKVMQSLNSRGWVKEQFAWRHFYWLLTN 71

Query:   428 DGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMTQRPDGGRGA-----DDRMSYRK 482
             +GIE+LR  L++P EIVPSTL +  R+ +A + PR     P GG G      DDR +YR+
Sbjct:    72 EGIEELRRYLHLPPEIVPSTLTQTTRS-NAVR-PRGGPGGPGGGFGGASKTDDDRSNYRR 129

Query:   483 GP--QGVDKKADVGAGSTEVEFKGYGGLAS 510
             GP   G+DKK DVGAG+  VE++G  G AS
Sbjct:   130 GPGAYGMDKKGDVGAGTGRVEYRGGFGRAS 159

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0005737 "cytoplasm" evidence=NAS

GO:0006412 "translation" evidence=IC

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-040426-1481 rps10 "ribosomal protein S10" [Danio rerio (taxid:7955)]

 Score = 272 (100.8 bits), Expect = 6.6e-23, P = 6.6e-23
 Identities = 64/143 (44%), Positives = 91/143 (63%)

Query:   369 VFKELLVQAKVKYNLS--PALRRRRRQSLPPVQHSPNPSLKSKGWVNEQFAWRHYYWYIT 426
             +FKE ++ AK   +L+  P L  +   +L  ++     SLKS G+V EQFAWRH+YWY+T
Sbjct:    15 LFKEGVMVAKKDVHLAKHPELADKNVPNLHVMKAMQ--SLKSCGYVKEQFAWRHFYWYLT 72

Query:   427 NDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMT-QRPDG-GRGADDRMSYRKGP 484
             N+GI+ LR  L++P EIVP+TL+RQ R   A   P+ +  +RP    RG  DR +YR+  
Sbjct:    73 NEGIQYLRDFLHLPPEIVPATLRRQTRPETARPRPKGLEGERPARLARGEGDRDAYRRSA 132

Query:   485 Q--GVDKKADVGAGS-TEVEFKG 504
                G DKKA+ GAG+ TE +F+G
Sbjct:   133 AQPGADKKAEAGAGAATEFQFRG 155

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|Q3T0F4 RPS10 "40S ribosomal protein S10" [Bos taurus (taxid:9913)]

 Score = 266 (98.7 bits), Expect = 3.0e-22, P = 3.0e-22
 Identities = 63/143 (44%), Positives = 91/143 (63%)

Query:   369 VFKELLVQAKVKYNLS--PALRRRRRQSLPPVQHSPNPSLKSKGWVNEQFAWRHYYWYIT 426
             +FKE ++ AK   ++   P L  +   +L  ++     SLKS+G+V EQFAWRH+YWY+T
Sbjct:    15 LFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQ--SLKSRGYVKEQFAWRHFYWYLT 72

Query:   427 NDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMT-QRPDG-GRGADDRMSYRKG- 483
             N+GI+ LR  L++P EIVP+TL+R    T   + P+ +  +RP    RG  DR +YR+  
Sbjct:    73 NEGIQYLRDYLHLPPEIVPATLRRSRPETGRPR-PKGLEGERPARLTRGEADRDTYRRSA 131

Query:   484 -PQGVDKKADVGAGS-TEVEFKG 504
              P G DKKA+ GAGS TE +F+G
Sbjct:   132 VPPGADKKAEAGAGSATEFQFRG 154

GO:0005730 "nucleolus" evidence=ISS

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|P46783 RPS10 "40S ribosomal protein S10" [Homo sapiens (taxid:9606)]

 Score = 266 (98.7 bits), Expect = 3.0e-22, P = 3.0e-22
 Identities = 63/143 (44%), Positives = 91/143 (63%)

Query:   369 VFKELLVQAKVKYNLS--PALRRRRRQSLPPVQHSPNPSLKSKGWVNEQFAWRHYYWYIT 426
             +FKE ++ AK   ++   P L  +   +L  ++     SLKS+G+V EQFAWRH+YWY+T
Sbjct:    15 LFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQ--SLKSRGYVKEQFAWRHFYWYLT 72

Query:   427 NDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMT-QRPDG-GRGADDRMSYRKG- 483
             N+GI+ LR  L++P EIVP+TL+R    T   + P+ +  +RP    RG  DR +YR+  
Sbjct:    73 NEGIQYLRDYLHLPPEIVPATLRRSRPETGRPR-PKGLEGERPARLTRGEADRDTYRRSA 131

Query:   484 -PQGVDKKADVGAGS-TEVEFKG 504
              P G DKKA+ GAGS TE +F+G
Sbjct:   132 VPPGADKKAEAGAGSATEFQFRG 154

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=IC;TAS

GO:0005840 "ribosome" evidence=NAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1RZ28 RPS10 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 266 (98.7 bits), Expect = 3.0e-22, P = 3.0e-22
 Identities = 63/143 (44%), Positives = 91/143 (63%)

Query:   369 VFKELLVQAKVKYNLS--PALRRRRRQSLPPVQHSPNPSLKSKGWVNEQFAWRHYYWYIT 426
             +FKE ++ AK   ++   P L  +   +L  ++     SLKS+G+V EQFAWRH+YWY+T
Sbjct:    15 LFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQ--SLKSRGYVKEQFAWRHFYWYLT 72

Query:   427 NDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMT-QRPDG-GRGADDRMSYRKG- 483
             N+GI+ LR  L++P EIVP+TL+R    T   + P+ +  +RP    RG  DR +YR+  
Sbjct:    73 NEGIQYLRDYLHLPPEIVPATLRRSRPETGRPR-PKGLEGERPARFTRGEADRDTYRRSA 131

Query:   484 -PQGVDKKADVGAGS-TEVEFKG 504
              P G DKKA+ GAGS TE +F+G
Sbjct:   132 VPPGADKKAEAGAGSATEFQFRG 154

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P63325	RS10_MOUSE	No assigned EC number	0.5154	0.1587	0.5696	yes	N/A
P63326	RS10_RAT	No assigned EC number	0.5154	0.1587	0.5696	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	592
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	6e-52
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	9e-43
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	4e-34
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-33
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	6e-30
pfam00071	162	pfam00071, Ras, Ras family	6e-30
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	4e-26
pfam03501	96	pfam03501, S10_plectin, Plectin/S10 domain	2e-25
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	9e-23
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	1e-21
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	8e-20
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	8e-19
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	3e-18
PTZ00034	124	PTZ00034, PTZ00034, 40S ribosomal protein S10; Pro	7e-18
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	2e-17
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	2e-16
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	9e-16
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	2e-15
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	3e-14
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	6e-14
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	7e-14
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-13
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	4e-13
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	4e-13
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	5e-13
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	2e-12
pfam08477	116	pfam08477, Miro, Miro-like protein	6e-12
COG5045	105	COG5045, COG5045, Ribosomal protein S10E [Translat	7e-12
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	9e-12
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	2e-11
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	3e-11
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	7e-11
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-10
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-10
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	3e-10
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	4e-10
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	4e-08
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	9e-08
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	9e-08
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-07
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	2e-07
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	2e-07
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	3e-07
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	3e-07
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	4e-07
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	9e-07
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	9e-07
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-06
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-06
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	1e-06
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	1e-06
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-06
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-06
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	3e-06
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	3e-06
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	6e-06
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	9e-06
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-05
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	2e-05
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	3e-05
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	4e-05
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	5e-05
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	9e-05
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	1e-04
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-04
COG0532	509	COG0532, InfB, Translation initiation factor 2 (IF	1e-04
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	2e-04
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-04
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-04
cd01887	169	cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ euk	3e-04
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	6e-04
TIGR00487	587	TIGR00487, IF-2, translation initiation factor IF-	6e-04
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	6e-04
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	6e-04
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	8e-04
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	0.001
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	0.001
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	0.001
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	0.002
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	0.002
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	0.003
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	0.003
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	0.004
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	0.004
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	0.004
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	0.004
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	0.004

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score =  176 bits (448), Expect = 6e-52
 Identities = 75/159 (47%), Positives = 89/159 (55%), Gaps = 32/159 (20%)

Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T  +  FPAMR LSI + DAF LVY++DDP SFEE++ +R+ I E K    VPIVVVGNK
Sbjct: 54  TSGSYSFPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNK 113

Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
            D   E                                QV      S V++DW NGFVEA
Sbjct: 114 IDSLAER-------------------------------QVEAADALSTVELDWNNGFVEA 142

Query: 292 SAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPP 330
           SAKDN N+T+VFKELL QA +   LSPAL RRRR+S P 
Sbjct: 143 SAKDNENVTEVFKELLQQANLPSWLSPAL-RRRRESAPS 180

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  150 bits (381), Expect = 9e-43
 Identities = 71/247 (28%), Positives = 95/247 (38%), Gaps = 87/247 (35%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSG 123
           K+VV+G   VGKS++  RF+   F  +Y  TIE+ + +   ++G    LDI         
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDI--------- 51

Query: 124 KGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA 183
                           LD                              T    EF AMR 
Sbjct: 52  ----------------LD------------------------------TAGQEEFSAMRD 65

Query: 184 LSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
             I + D FILVY+I    SFEEI+ IR+ I   K    VPIV+VGNK DL +E RQV  
Sbjct: 66  QYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE-RQV-- 122

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF 303
                 +   G      A +                    W   F+E SAK N NI ++F
Sbjct: 123 ------STEEGE---ALAEE--------------------WGCPFLETSAKTNINIDELF 153

Query: 304 KELLVQA 310
             L+ + 
Sbjct: 154 NTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  126 bits (320), Expect = 4e-34
 Identities = 64/251 (25%), Positives = 96/251 (38%), Gaps = 87/251 (34%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS 122
           +K+VV+GG  VGKS++  +F+   F  +Y  TIE+ + +   ++G    LDI        
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCLLDI-------- 54

Query: 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR 182
                            LD                              T    EF AMR
Sbjct: 55  -----------------LD------------------------------TAGQEEFSAMR 67

Query: 183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
              + + + F+LVY+I D  SFEEI   R+ I   K    VPIV+VGNK DL +E R V 
Sbjct: 68  DQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLENE-RVVS 126

Query: 243 LTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV 302
              G                +++                  W   F+E SAK+  N+ + 
Sbjct: 127 TEEG---------------KELAR----------------QWGCPFLETSAKERINVDEA 155

Query: 303 FKELLVQAKVK 313
           F +L+ + +  
Sbjct: 156 FYDLVREIRKS 166

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  125 bits (316), Expect = 1e-33
 Identities = 63/249 (25%), Positives = 94/249 (37%), Gaps = 87/249 (34%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS 122
           +K+VV+G   VGKS++  +F+   F   Y  TIE+ + +   ++G    LDI        
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDI-------- 52

Query: 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR 182
                            LD                              T    EF AMR
Sbjct: 53  -----------------LD------------------------------TAGQEEFSAMR 65

Query: 183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
              + + + F+LVY+I D  SFEEI+  R+ I   K    VPIV+VGNK DL  E R V 
Sbjct: 66  DQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESE-RVVS 124

Query: 243 LTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV 302
              G                              + + +  W   F+E SAK+  N+ + 
Sbjct: 125 TEEG------------------------------KELAR-QWGCPFLETSAKERVNVDEA 153

Query: 303 FKELLVQAK 311
           F +L+ + +
Sbjct: 154 FYDLVREIR 162

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score =  117 bits (296), Expect = 6e-30
 Identities = 72/269 (26%), Positives = 112/269 (41%), Gaps = 94/269 (34%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS 122
           +++VV+G  KVGK++I+ RFL   F  +Y  TIE+ H                       
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFH----------------------- 37

Query: 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR 182
                                  R+  + R   Y+ D+   S           + FPAMR
Sbjct: 38  -----------------------RKLYSIRGEVYQLDILDTSG---------NHPFPAMR 65

Query: 183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA--------VPIVVVGNKSDL 234
            LSI + D FILV+++D+  SFEE+  +R+ I ETK+           +P+V+ GNK+D 
Sbjct: 66  RLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADR 125

Query: 235 ADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294
            D  R+V       +  + G  D  CA                          + E SAK
Sbjct: 126 -DFPREVQRD--EVEQLVGG--DENCA--------------------------YFEVSAK 154

Query: 295 DNTNITQVFKELLVQAKVKYNLSPALRRR 323
            N+N+ ++F+ L   AK+   +SP+L R+
Sbjct: 155 KNSNLDEMFRALFSLAKLPNEMSPSLHRK 183

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  114 bits (289), Expect = 6e-30
 Identities = 64/247 (25%), Positives = 95/247 (38%), Gaps = 93/247 (37%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI-EEMHHEDFSMNGVHLKLDILDTSGEQS 122
           K+V++G   VGKSS++ RF  N F  +Y  TI  + + +   ++G  +KL I DT+G++ 
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR 182
            + L                         RP+ Y+                         
Sbjct: 61  FRAL-------------------------RPLYYRG------------------------ 71

Query: 183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
                 A  F+LVY I   +SFE ++   + I    A   VPIV+VGNK DL D+ R V 
Sbjct: 72  ------AQGFLLVYDITSRDSFENVKKWLEEILRH-ADENVPIVLVGNKCDLEDQ-RVV- 122

Query: 243 LTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNIT 300
                                           +TE    +  E G  F+E SAK N N+ 
Sbjct: 123 --------------------------------STEEGEALAKELGLPFMETSAKTNENVE 150

Query: 301 QVFKELL 307
           + F+EL 
Sbjct: 151 EAFEELA 157

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  105 bits (263), Expect = 4e-26
 Identities = 64/256 (25%), Positives = 97/256 (37%), Gaps = 87/256 (33%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSG 123
           K+ V+G   VGKSS+  +F+   F   Y  TIE    +  +  G    L+I+DT+     
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHLEIVDTA----- 57

Query: 124 KGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA 183
                          G D+  +   L Q+   Y   +                       
Sbjct: 58  ---------------GQDEYSI---LPQK---YSIGIH---------------------- 74

Query: 184 LSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
                   +ILVY++    SFE +++I D I +     +VPIV+VGNKSDL  E RQV  
Sbjct: 75  -------GYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHME-RQVSA 126

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF 303
             G        L +S                         W   F+E+SAK+N N+ + F
Sbjct: 127 EEG------KKLAES-------------------------WGAAFLESSAKENENVEEAF 155

Query: 304 KELLVQAKVKYNLSPA 319
           + L+ + +   N  P 
Sbjct: 156 ELLIEEIEKVENPLPP 171

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|190664 pfam03501, S10_plectin, Plectin/S10 domain

 Score =  100 bits (251), Expect = 2e-25
 Identities = 34/51 (66%), Positives = 43/51 (84%)

Query: 405 SLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTT 455
           SLKS+G+V EQFAWRHYYWY+TN+GIE LR  L++P E+VP+TLK+ AR  
Sbjct: 46  SLKSRGYVKEQFAWRHYYWYLTNEGIEYLREYLHLPAEVVPATLKKPARPF 96

This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. Length = 96

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 95.7 bits (238), Expect = 9e-23
 Identities = 38/69 (55%), Positives = 46/69 (66%), Gaps = 2/69 (2%)

Query: 338 VPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPP 397
           V      S V++DW NGFVEASAKDN N+T+VFKELL QA +   LSPAL RRRR+S P 
Sbjct: 122 VEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQANLPSWLSPAL-RRRRESAPS 180

Query: 398 VQHSPNPSL 406
            +    P +
Sbjct: 181 -EIQRRPPM 188

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 93.0 bits (231), Expect = 1e-21
 Identities = 71/274 (25%), Positives = 105/274 (38%), Gaps = 87/274 (31%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI-EEMHHEDFSMNGVHLKLDILDTSGEQS 122
           +V V+G P VGK++I+ +FL   F  +Y  T    ++     ++G    L ILD    Q 
Sbjct: 2   RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQR 61

Query: 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR 182
             G          ++W                                           R
Sbjct: 62  YPGT-------AGQEW----------------------------------------MDPR 74

Query: 183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA--VPIVVVGNKSDLADENRQ 240
              + ++ AFILVY I  P+SF  ++L+R  I ET+ +     PIVVVGNK D       
Sbjct: 75  FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRD------- 127

Query: 241 VDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300
                   Q      P  V +                 +V+  W+ G++E SAK N +I 
Sbjct: 128 --------QQRHRFAPRHVLSV----------------LVRKSWKCGYLECSAKYNWHIL 163

Query: 301 QVFKELLVQAKVK-YNLSPALR-----RRRRQSL 328
            +FKELL+ A  +  +  PALR      R R S+
Sbjct: 164 LLFKELLISATTRGRSTHPALRLQGALHRERCSI 197

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 87.6 bits (217), Expect = 8e-20
 Identities = 30/59 (50%), Positives = 46/59 (77%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS 122
           ++V MG   VGK+++I RFLY+TF PK++RT+EE+H +++ + GV + +DILDTSG  S
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYS 59

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 83.7 bits (207), Expect = 8e-19
 Identities = 62/250 (24%), Positives = 100/250 (40%), Gaps = 91/250 (36%)

Query: 62  RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ 121
            +KVVV+G   VGKS++  +F+  TF  KY  TI     EDF                  
Sbjct: 1   EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI-----EDF------------------ 37

Query: 122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAM--TCSTNEFP 179
                                             Y+ ++++ S  + L +  T  T +F 
Sbjct: 38  ----------------------------------YRKEIEVDSSPSVLEILDTAGTEQFA 63

Query: 180 AMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENR 239
           +MR L I +   FI+VY++ +  +F++I+ +RD I   K    VPI++VGNK DL  E R
Sbjct: 64  SMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESE-R 122

Query: 240 QVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299
           +V    G                               ++ + +W   F+E SAK  T +
Sbjct: 123 EVSSAEG------------------------------RALAE-EWGCPFMETSAKSKTMV 151

Query: 300 TQVFKELLVQ 309
            ++F E++ Q
Sbjct: 152 NELFAEIVRQ 161

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 82.1 bits (203), Expect = 3e-18
 Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 33/157 (21%)

Query: 155 AYKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRD 212
           +Y+  V++  +   L +  T  T +F AMR L I S   F+LVY++    S  E+  +R+
Sbjct: 37  SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELRE 96

Query: 213 HIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP 272
            +   K S  VP+V+VGNK+DL D+ RQV    G                 +S     VP
Sbjct: 97  QVLRIKDSDNVPMVLVGNKADLEDD-RQVSREDG---------------VSLSQQWGNVP 140

Query: 273 YDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQ 309
                          F E SA+  TN+ +VF +L+ Q
Sbjct: 141 ---------------FYETSARKRTNVDEVFIDLVRQ 162

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|173331 PTZ00034, PTZ00034, 40S ribosomal protein S10; Provisional

 Score = 79.7 bits (197), Expect = 7e-18
 Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 3/79 (3%)

Query: 405 SLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQM 464
           SLKS+G V EQFAW+HYY+Y+T++GIE LR  L++P ++ P+T K+++      K   + 
Sbjct: 49  SLKSRGLVKEQFAWQHYYYYLTDEGIEYLRTYLHLPPDVFPATHKKKSVNF-ERKTEEEG 107

Query: 465 TQRPDGGRGADDRMSYRKG 483
           ++   GGRG      Y +G
Sbjct: 108 SRGGRGGRGRGR--GYGRG 124

Length = 124

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 79.9 bits (197), Expect = 2e-17
 Identities = 60/250 (24%), Positives = 92/250 (36%), Gaps = 92/250 (36%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS 122
           +K+VV+G   VGKS++  +F+   F  KY  TI     ED                    
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTI-----EDS------------------- 37

Query: 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAM--TCSTNEFPA 180
                                            Y+  +++  +   L +  T  T +F A
Sbjct: 38  ---------------------------------YRKQIEVDCQQCMLEILDTAGTEQFTA 64

Query: 181 MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQ 240
           MR L I +   F LVY+I    SF +++ +R+ I   K +  VP+++VGNK DL DE R 
Sbjct: 65  MRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE-RV 123

Query: 241 VDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWEN-GFVEASAKDNTNI 299
           V    G                                 +   W N  F+E SAK   N+
Sbjct: 124 VSKEEG-------------------------------QNLARQWGNCPFLETSAKSKINV 152

Query: 300 TQVFKELLVQ 309
            ++F +L+ Q
Sbjct: 153 DEIFYDLVRQ 162

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 77.6 bits (191), Expect = 2e-16
 Identities = 64/258 (24%), Positives = 97/258 (37%), Gaps = 88/258 (34%)

Query: 61  TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120
           T +K+VV+GG  VGKS++  +F+ N F  +Y  TIE+ + +   ++              
Sbjct: 4   TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVID-------------- 49

Query: 121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPA 180
                               ++ CL   L+                     T    E+ A
Sbjct: 50  --------------------EETCLLDILD---------------------TAGQEEYSA 68

Query: 181 MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQ 240
           MR   + +   F+ VY+I   +SFEEI   R+ I   K    VP+++VGNK DL D  RQ
Sbjct: 69  MRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDL-DSERQ 127

Query: 241 VDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300
           V  + G  Q                G P                   F+E SAK   N+ 
Sbjct: 128 V--STGEGQELAKSF----------GIP-------------------FLETSAKQRVNVD 156

Query: 301 QVFKELLVQAKVKYNLSP 318
           + F EL+ + + KY    
Sbjct: 157 EAFYELVREIR-KYLKED 173

Length = 189

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 75.0 bits (185), Expect = 9e-16
 Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 55/185 (29%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSG 123
           K+ V+G   VGKS++  RFL   F  +Y+  +E ++    +++G  + L+I DT G+Q  
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPGQQQN 60

Query: 124 KGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA 183
           +                                                 S         
Sbjct: 61  ED----------------------------------------------PESLER------ 68

Query: 184 LSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK-ASTAVPIVVVGNKSDLADENRQVD 242
            S+  AD F+LVY+I D +SF+ +  +   I E K     +P+++VGNK+DL   +RQV 
Sbjct: 69  -SLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADL-LHSRQVS 126

Query: 243 LTGGP 247
              G 
Sbjct: 127 TEEGQ 131

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 74.1 bits (182), Expect = 2e-15
 Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 34/138 (24%)

Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST--AVPIVVVG 229
           T  +++FPAM+ LSIS   AFILVY+I    S EE++ I + I E K +    +PI++VG
Sbjct: 56  TTGSHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVG 115

Query: 230 NKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFV 289
           NK D    +R+V  + G           +  A                      W   F+
Sbjct: 116 NKCD-ESPSREVSSSEG-----------AALA--------------------RTWNCAFM 143

Query: 290 EASAKDNTNITQVFKELL 307
           E SAK N N+ ++F+ELL
Sbjct: 144 ETSAKTNHNVQELFQELL 161

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 70.2 bits (172), Expect = 3e-14
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 34/157 (21%)

Query: 155 AYKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRD 212
           +Y+  V++  +   L +  T  T +F AMR L + +   F+LVY+I   ++F +++ +R+
Sbjct: 37  SYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLRE 96

Query: 213 HIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP 272
            I   K +  VP+++VGNK DL DE R V    G              A Q         
Sbjct: 97  QILRVKDTEDVPMILVGNKCDLEDE-RVVGKEQG-----------QNLARQ--------- 135

Query: 273 YDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQ 309
                      W   F+E SAK   N+ ++F +L+ Q
Sbjct: 136 -----------WGCAFLETSAKAKINVNEIFYDLVRQ 161

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 69.4 bits (170), Expect = 6e-14
 Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 32/135 (23%)

Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    EF AMR   + + + F+LV+++ D  SFEE+      I   K     P+++VGNK
Sbjct: 57  TAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNK 116

Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
           +DL +  RQV    G              A Q+      +PY               +E 
Sbjct: 117 ADL-EHQRQVSREEG-----------QELARQLK-----IPY---------------IET 144

Query: 292 SAKDNTNITQVFKEL 306
           SAKD  N+ + F +L
Sbjct: 145 SAKDRVNVDKAFHDL 159

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 69.4 bits (170), Expect = 7e-14
 Identities = 47/244 (19%), Positives = 85/244 (34%), Gaps = 87/244 (35%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS 122
           HKV+++G   VGKS++  +F+Y+ F   Y+ T  + + +   ++G  ++L+ILDT+G++ 
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQED 60

Query: 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR 182
              ++             +   L  ++                                 
Sbjct: 61  YAAIRDNYF------RSGEGFLLVFSITDM------------------------------ 84

Query: 183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
                               SF  +   R+ I   K    VP+++VGNK DL ++ RQV 
Sbjct: 85  -------------------ESFTALAEFREQILRVKEDDNVPLLLVGNKCDL-EDKRQV- 123

Query: 243 LTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV 302
                                              + +   W   +VE SAK   N+ +V
Sbjct: 124 ------------------------------SVEEAANLAEQWGVNYVETSAKTRANVDKV 153

Query: 303 FKEL 306
           F +L
Sbjct: 154 FFDL 157

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 67.8 bits (166), Expect = 2e-13
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI+   SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 56  TAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNK 115

Query: 232 SDLADENRQVD 242
            DL    R V 
Sbjct: 116 CDL--AARTVS 124

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 67.1 bits (165), Expect = 4e-13
 Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 39/122 (31%)

Query: 188 SADAFILVYAIDDPNSFEEIR-LIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGG 246
            A   ILVY + +  SFE +   + +   +  A   +PI++VGNKSDL DE         
Sbjct: 72  GAHGAILVYDVTNRESFENLDKWLNE--LKEYAPPNIPIILVGNKSDLEDE--------- 120

Query: 247 PFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQVFK 304
                                  QV  +  +   +   ENG  F E SAK   N+ + F+
Sbjct: 121 ----------------------RQVSTEEAQQFAK---ENGLLFFETSAKTGENVDEAFE 155

Query: 305 EL 306
            L
Sbjct: 156 SL 157

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 67.1 bits (164), Expect = 4e-13
 Identities = 45/246 (18%), Positives = 77/246 (31%), Gaps = 90/246 (36%)

Query: 66  VVMGGPKVGKSSIIHRFLYNTF---SPKYKRTIEE-MHHEDFSMNGVHLKLDILDTSGEQ 121
           VV+G   VGKSS+++  L       S     T +  ++ ++     V  KL ++DT    
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKV--KLVLVDTP--- 55

Query: 122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAM 181
                            GLD+           +  +                        
Sbjct: 56  -----------------GLDEFGGLGREELARLLLRG----------------------- 75

Query: 182 RALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQV 241
                  AD  +LV    D  S E+ +L+       +    +PI++VGNK DL +E    
Sbjct: 76  -------ADLILLVVDSTDRESEEDAKLLILRRLRKEG---IPIILVGNKIDLLEEREVE 125

Query: 242 DLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301
           +L        + G+P                                 E SAK    + +
Sbjct: 126 ELLRLEELAKILGVP-------------------------------VFEVSAKTGEGVDE 154

Query: 302 VFKELL 307
           +F++L+
Sbjct: 155 LFEKLI 160

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 67.2 bits (165), Expect = 5e-13
 Identities = 49/253 (19%), Positives = 90/253 (35%), Gaps = 98/253 (38%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSG 123
           K+VV+G   VGK+ ++  +  N F  +Y  T+ + +  + +++G  + L + DT+G++  
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQE-- 59

Query: 124 KGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA 183
                            D++        RP++Y                           
Sbjct: 60  ---------------EYDRL--------RPLSY--------------------------- 69

Query: 184 LSISSADAFILVYAIDDPNSFE--------EIRLIRDHIFETKASTAVPIVVVGNKSDLA 235
                 D F+L +++D P+SFE        EI+    H         VPI++VG K DL 
Sbjct: 70  ---PQTDVFLLCFSVDSPSSFENVKTKWYPEIK----HYCPN-----VPIILVGTKIDLR 117

Query: 236 DENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG---FVEAS 292
           D+   +                             +  +  E + +   E G   ++E S
Sbjct: 118 DDGNTLKKLEKKQ--------------------KPITPEEGEKLAK---EIGAVKYMECS 154

Query: 293 AKDNTNITQVFKE 305
           A     + +VF E
Sbjct: 155 ALTQEGLKEVFDE 167

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 64.9 bits (159), Expect = 2e-12
 Identities = 54/252 (21%), Positives = 90/252 (35%), Gaps = 105/252 (41%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI------EEMHHEDFSMNGVHLKLDILDT 117
           K+V++G   VGKSSI+ RF+ N FS   + TI      + ++ +D +     +K +I DT
Sbjct: 3   KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTT-----VKFEIWDT 57

Query: 118 SGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNE 177
           +G++  + L                          PM Y+                    
Sbjct: 58  AGQERYRSLA-------------------------PMYYR-------------------- 72

Query: 178 FPAMRALSISSADAFILVYAIDDPNSFEEIRL-IRDHIFETKASTAVPIVVVGNKSDLAD 236
                      A A I+VY I    SFE+ +  +++   +      + I + GNK+DL  
Sbjct: 73  ----------GAAAAIVVYDITSEESFEKAKSWVKE--LQEHGPPNIVIALAGNKADLES 120

Query: 237 ENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAK 294
           +                                QV  +  +       ENG  F+E SAK
Sbjct: 121 KR-------------------------------QVSTEEAQEYAD---ENGLLFMETSAK 146

Query: 295 DNTNITQVFKEL 306
              N+ ++F E+
Sbjct: 147 TGENVNELFTEI 158

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 62.4 bits (152), Expect = 6e-12
 Identities = 32/169 (18%), Positives = 51/169 (30%), Gaps = 55/169 (32%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSG 123
           KVVV+G    GKSS++ + +   F P+      E+  +      V       DT      
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEP----LEIQGDTL---AVDTLEVDGDTGLL--- 50

Query: 124 KGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA 183
                                       R                        E      
Sbjct: 51  ---------------------NIWDFGGRE-----------------------ELKFEHI 66

Query: 184 LSISSADAFILVYAIDDPNSFEEIRLIRDHIFE-TKASTAVPIVVVGNK 231
           + +  ADA +LVY + D  S  E+  +   +    K    +P+++VGNK
Sbjct: 67  IFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|227378 COG5045, COG5045, Ribosomal protein S10E [Translation, ribosomal structure and biogenesis]

 Score = 61.9 bits (150), Expect = 7e-12
 Identities = 22/49 (44%), Positives = 28/49 (57%)

Query: 405 SLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQAR 453
           SL S G+V     WRH Y+ +T +G+E LR  L +PDE VPST      
Sbjct: 48  SLISYGYVKTIHVWRHSYYTLTPEGVEYLREYLVLPDEGVPSTEAPAVS 96

Length = 105

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 63.3 bits (155), Expect = 9e-12
 Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 39/122 (31%)

Query: 189 ADAFILVYAIDDPNSFEEI-RLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGP 247
           A   +LVY I +  SFE +   +++      AS  V I++VGNKSDL ++ RQV      
Sbjct: 73  AVGALLVYDITNRESFENLENWLKE--LREYASPNVVIMLVGNKSDLEEQ-RQV------ 123

Query: 248 FQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQVFKE 305
                                      + E       E+G  F E SAK NTN+ + F+E
Sbjct: 124 ---------------------------SREEAEAFAEEHGLPFFETSAKTNTNVEEAFEE 156

Query: 306 LL 307
           L 
Sbjct: 157 LA 158

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 63/272 (23%), Positives = 97/272 (35%), Gaps = 101/272 (37%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSG 123
           K+VV+G   VGK+++  +   N F   Y  TIE+ +                        
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR----------------------- 37

Query: 124 KGLKCGAVLWGPKKWGLD-KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR 182
                       K+  +D + C+   L+                     T    E+ A+R
Sbjct: 38  ------------KQVVVDGQPCMLEVLD---------------------TAGQEEYTALR 64

Query: 183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA--VPIVVVGNKSDLADENRQ 240
              I   + FILVY+I   ++FE +   R+ I   K  +A  VPI++VGNK D   E R+
Sbjct: 65  DQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE-RE 123

Query: 241 VDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300
           V    G           +  A ++                       F+EASAK N N+ 
Sbjct: 124 VSTEEG-----------AALARRLG--------------------CEFIEASAKTNVNVE 152

Query: 301 QVFKELLVQAKVKYNLSPALRRRRRQSLPPVQ 332
           + F          Y L  ALR++R+    P  
Sbjct: 153 RAF----------YTLVRALRQQRQGGQGPKG 174

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 43/187 (22%)

Query: 156 YKTDVQLP-SKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFE------- 205
           Y T +Q+P  K+  LA+  T    ++  +R LS    D  ++ Y++D+P S +       
Sbjct: 40  YVTTLQVPNGKIIELALWDTAGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWY 99

Query: 206 -EIRLIRDHIFETKASTAVPIVVVGNKSDL-ADENRQVDLTGGPFQTYLSGLPDSVCAHQ 263
            E+                PIV+VG K+DL  D+N                   S    Q
Sbjct: 100 PEVNHFCPG---------TPIVLVGLKTDLRKDKNSV-----------------SKLRAQ 133

Query: 264 ISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKE--LLVQAKVKYNLSPALR 321
                + V  +  ESV +      ++E SAK   N+ +VF     +  +K         +
Sbjct: 134 ---GLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINVALSKSGRAARKKKK 190

Query: 322 RRRRQSL 328
           +++   L
Sbjct: 191 KKKCVIL 197

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 61.1 bits (149), Expect = 7e-11
 Identities = 47/248 (18%), Positives = 89/248 (35%), Gaps = 89/248 (35%)

Query: 65  VVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGK 124
           +VV+G   VGK+ ++  +  N F   Y  T+ E +  D  ++G  ++L + DT+G++   
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD 60

Query: 125 GLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRAL 184
            L                         RP++Y                            
Sbjct: 61  RL-------------------------RPLSY---------------------------- 67

Query: 185 SISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKASTAVPIVVVGNKSDLADENR 239
                D F++ +++D P SFE ++      ++           VPI++VG K DL +   
Sbjct: 68  --PDTDVFLICFSVDSPASFENVKEKWYPEVKHF------CPNVPIILVGTKLDLRN--- 116

Query: 240 QVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP--YDTTESVVQVDWENGFVEASAKDNT 297
                            D     ++S    Q P  Y+  +++ +      ++E SA    
Sbjct: 117 -----------------DKSTLEELSK-KKQEPVTYEQGQALAKRIGAVKYLECSALTQE 158

Query: 298 NITQVFKE 305
            + +VF+E
Sbjct: 159 GVREVFEE 166

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 59.8 bits (146), Expect = 1e-10
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI-EEMHHEDFSMNGVHLKLDILDTSG 119
           K+V++G   VGK+S++ RF+ N FS  YK TI  +   +   ++G  +KL I DT+G
Sbjct: 2   KIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAG 58

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 61.5 bits (149), Expect = 1e-10
 Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 23/138 (16%)

Query: 177 EFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
           E+ ++R      A+  ++VY      S +E+           A   VPI++VGNK DL D
Sbjct: 66  EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125

Query: 237 ENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPY--DTTESVVQVDWENGFVEASAK 294
           E                    S     ++    +V       ++V+        +E SAK
Sbjct: 126 E-------------------QSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAK 166

Query: 295 --DNTNITQVFKELLVQA 310
                N+ ++FKELL + 
Sbjct: 167 SLTGPNVNELFKELLRKL 184

Length = 219

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 58.7 bits (142), Expect = 3e-10
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 3/89 (3%)

Query: 155 AYKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRD 212
           AYKT  ++ ++   L +  T    EF AMR   +   + FI+ Y++ D +SF+E    ++
Sbjct: 38  AYKTQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKE 97

Query: 213 HIFETKASTAVPIVVVGNKSDLADENRQV 241
            I   + +  +P+V+VGNK DL ++ RQV
Sbjct: 98  LITRVRLTEDIPLVLVGNKVDL-EQQRQV 125

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 58.6 bits (142), Expect = 4e-10
 Identities = 60/250 (24%), Positives = 93/250 (37%), Gaps = 94/250 (37%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSG 123
           KV+V+G   VGKSS+I RF+   F+  YK+TI           GV    D L+       
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTI-----------GV----DFLEK------ 40

Query: 124 KGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA 183
                             ++ LR++          DV+L      L  T    EF A+  
Sbjct: 41  ------------------QIFLRQS--------DEDVRL-----MLWDTAGQEEFDAITK 69

Query: 184 LSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE----NR 239
                A A ILV++  D  SFE I   ++ +        +P+V+V  K DL D+    N 
Sbjct: 70  AYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGD--IPMVLVQTKIDLLDQAVITNE 127

Query: 240 QVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299
           + +            L     A ++     Q+P                   S KD+ N+
Sbjct: 128 EAE-----------AL-----AKRL-----QLP---------------LFRTSVKDDFNV 151

Query: 300 TQVFKELLVQ 309
           T++F+ L  +
Sbjct: 152 TELFEYLAEK 161

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 26/152 (17%)

Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
           Y  D+++  K   LA+  T    ++  +R LS    D  ++ ++ID P+S E I      
Sbjct: 38  YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKW 95

Query: 214 IFETKA-STAVPIVVVGNKSDL-ADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQV 271
             E K     VPI++VGNK DL  DE+   +L                   ++   P  V
Sbjct: 96  TPEVKHFCPNVPIILVGNKKDLRNDEHTIREL------------------AKMKQEP--V 135

Query: 272 PYDTTESVVQVDWENGFVEASAKDNTNITQVF 303
             +   ++ +     G++E SAK    + +VF
Sbjct: 136 KPEEGRAMAEKIGAFGYLECSAKTKEGVREVF 167

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 23/60 (38%), Positives = 40/60 (66%)

Query: 62  RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ 121
            +K+VV+GG  VGKS++  +F+ + F   Y  TIE+ + +   ++G   +LDILDT+G++
Sbjct: 2   TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWARLDILDTAGQE 61

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 52.7 bits (126), Expect = 9e-08
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQS 122
           K+VV+G   VGK+++++R + + F   Y  TI      +       ++KL + DT+G++ 
Sbjct: 7   KIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE 66

Query: 123 GKGL 126
            + L
Sbjct: 67  YRSL 70

Length = 219

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 56/177 (31%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSP-KYKRTIEEMHHED-FSMNGVHLKLDILDTSGEQ 121
           K+V++G P VGKS++++R L N  S  +YK      +       +G   K ++LDT+G++
Sbjct: 3   KIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 62

Query: 122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAM 181
                              D   +RR                                  
Sbjct: 63  -------------------DYDAIRRLYY--RAVES------------------------ 77

Query: 182 RALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADEN 238
              S+   D  ILV  +++    ++ + I  H     A + VPI++VGNK DL D  
Sbjct: 78  ---SLRVFDIVILVLDVEEILE-KQTKEIIHH-----AESGVPIILVGNKIDLRDAK 125

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 9/61 (14%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNGVHLKLDILDTS 118
           K++++G   VGKSS++ RF    FS +YK TI      DF      ++G  +KL I DT+
Sbjct: 2   KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIG----VDFKTKTIEVDGKRVKLQIWDTA 57

Query: 119 G 119
           G
Sbjct: 58  G 58

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 11/63 (17%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI------EEMHHEDFSMNGVHLKLDILD 116
           HK+V +G   VGK+SII RF+Y+TF  +Y+ TI      + M+ +D ++     +L + D
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTV-----RLQLWD 55

Query: 117 TSG 119
           T+G
Sbjct: 56  TAG 58

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 56/250 (22%), Positives = 96/250 (38%), Gaps = 91/250 (36%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQS 122
           KV+++G   VGKSS+++R++ N F  +   TI  E  ++D  ++G  + L I DT+G++ 
Sbjct: 7   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER 66

Query: 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR 182
            + L+       P   G D   L  +++    +++             ++    EF    
Sbjct: 67  FRSLRT------PFYRGSDCCLLTFSVDDS-QSFQN------------LSNWKKEF---- 103

Query: 183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
              I  AD       + +P SF                   P V++GNK D+ +  RQV 
Sbjct: 104 ---IYYAD-------VKEPESF-------------------PFVILGNKIDIPE--RQV- 131

Query: 243 LTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG---FVEASAKDNTNI 299
                                           +TE       +NG   + E SAKD TN+
Sbjct: 132 --------------------------------STEEAQAWCRDNGDYPYFETSAKDATNV 159

Query: 300 TQVFKELLVQ 309
              F+E + +
Sbjct: 160 AAAFEEAVRR 169

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 37/122 (30%), Positives = 50/122 (40%), Gaps = 36/122 (29%)

Query: 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKAST----AVPIVVVGNKSDLADENRQVDLT 244
           AD  +LVY + +P SFE +   RD  F  +AS       P VV+GNK DL +E RQV   
Sbjct: 73  ADCCVLVYDVTNPKSFESLDSWRDE-FLIQASPRDPENFPFVVLGNKIDL-EEKRQVSTK 130

Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFK 304
                           A Q   +   +PY                E SAK+  N+ Q F+
Sbjct: 131 K---------------AQQWCKSKGNIPY---------------FETSAKEAINVDQAFE 160

Query: 305 EL 306
            +
Sbjct: 161 TI 162

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 36/118 (30%), Positives = 46/118 (38%), Gaps = 33/118 (27%)

Query: 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPF 248
           A   ILVY I D  SFE I+    +I E  AS  V  ++VGNK D+ +E R V    G  
Sbjct: 76  AMGIILVYDITDEKSFENIKNWMRNIDE-HASEDVERMLVGNKCDM-EEKRVVSKEEG-- 131

Query: 249 QTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKEL 306
                 L      + I                       F+E SAK N N+ + F  L
Sbjct: 132 ----EALARE---YGIK----------------------FLETSAKANINVEEAFLTL 160

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 48.7 bits (116), Expect = 9e-07
 Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG-EQ 121
           +K+VV+G   VGKS++  +F+   F  KY  TIE+ + +   ++G    L+ILDT+G EQ
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 61

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 18/48 (37%), Positives = 32/48 (66%)

Query: 188 SADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA 235
             DA+++VY++ D +SFE+   +R  +   + +  +PI++VGNKSDL 
Sbjct: 72  VGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLV 119

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI 95
          KV+V+G   VGK+SII R+++  FS  YK TI
Sbjct: 2  KVLVIGDLGVGKTSIIKRYVHGVFSQHYKATI 33

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 45/123 (36%)

Query: 193 ILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPF 248
           +LVY I   ++FE +      +RDH     A + + I++VGNKSDL    R V       
Sbjct: 80  LLVYDITKKSTFENVERWLKELRDH-----ADSNIVIMLVGNKSDLRHL-RAV------- 126

Query: 249 QTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQVFKEL 306
                                      TE       +NG  F+E SA D TN+ + FK+L
Sbjct: 127 --------------------------PTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160

Query: 307 LVQ 309
           L +
Sbjct: 161 LTE 163

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
           A  I  A+   LVY++D P++ E IR     +        VPI++VGNKSDL D + Q  
Sbjct: 67  AAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAG 125

Query: 243 LT 244
           L 
Sbjct: 126 LE 127

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 33/125 (26%)

Query: 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPF 248
           A   I+VY + D  SF  ++     I +  AS  V  ++VGNK DL D+ + VD T    
Sbjct: 75  AHGIIIVYDVTDQESFNNVKQWLQEI-DRYASENVNKLLVGNKCDLTDK-KVVDYTEA-- 130

Query: 249 QTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLV 308
           + +            I                       F+E SAK+ TN+ + F  +  
Sbjct: 131 KEFAD-------ELGIP----------------------FLETSAKNATNVEEAFMTMAR 161

Query: 309 QAKVK 313
           + K +
Sbjct: 162 EIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 19/59 (32%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQ 121
           KVV++G  +VGK+S++ R++ N F+ K++ T +     +  ++ G  + L I DT+G++
Sbjct: 2   KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 66/179 (36%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSG 123
           K V++G   VGK+S+I  +  N +  +Y  T  +       ++G  ++L + DT+G+   
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE- 60

Query: 124 KGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA 183
                            DK+        RP+ Y                           
Sbjct: 61  ----------------FDKL--------RPLCY--------------------------- 69

Query: 184 LSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKASTAVPIVVVGNKSDLADE 237
                 D F+L +++ +P+SF+ I       IR H      +   PI++VG ++DL  +
Sbjct: 70  ---PDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH------NPKAPIILVGTQADLRTD 119

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS 122
           ++VVV G   VGKSS++ RF+  TF   Y  TIE+ + +  S +     L I DT+G   
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQITDTTGSHQ 61

Query: 123 GKGLK 127
              ++
Sbjct: 62  FPAMQ 66

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 8/71 (11%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE---EMHHEDFSMNGVHLKLDILDTSG 119
            KV+V+G   VGK+ +I+RF  + F   YK TI    EM  E F + GV   L + DT+G
Sbjct: 1   SKVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEM--ERFEVLGVPFSLQLWDTAG 58

Query: 120 EQSGKGLKCGA 130
           ++     KC A
Sbjct: 59  QER---FKCIA 66

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 45/127 (35%)

Query: 186 ISSADAFILVYAIDDPNSFEEIR----LIRDHIFETKASTAVPIVVVGNKSDLADENRQV 241
           I  +   ++VY I +  SF+        +RD     +    V IV+VGNK+DL+D+    
Sbjct: 70  IRDSSVAVVVYDITNRQSFDNTDKWIDDVRD-----ERGNDVIIVLVGNKTDLSDKR--- 121

Query: 242 DLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNI 299
                                       QV  +  E   +   EN   F+E SAK   N+
Sbjct: 122 ----------------------------QVSTEEGEKKAK---ENNAMFIETSAKAGHNV 150

Query: 300 TQVFKEL 306
            Q+FK++
Sbjct: 151 KQLFKKI 157

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 46.4 bits (110), Expect = 9e-06
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
           Y TD ++  K   LA+  T    E+  +R LS S A   ++ +AID P+S E +R     
Sbjct: 38  YVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAIDTPDSLENVR--TKW 95

Query: 214 IFE-TKASTAVPIVVVGNKSDLADE 237
           I E  +    VP+++VG K DL  E
Sbjct: 96  IEEVRRYCPNVPVILVGLKKDLRQE 120

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 22/59 (37%), Positives = 38/59 (64%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ 121
           +K+VV+G   VGKS++  + + N F  +Y  TIE+ + +   ++G    LDILDT+G++
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 60

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 9/69 (13%)

Query: 58  GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFS-----MNGVHLKL 112
            +D   K++++G   VGKSS++ RF  NTFS  Y  TI      DF      +NG  +KL
Sbjct: 2   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTI----GVDFKIRTVEINGERVKL 57

Query: 113 DILDTSGEQ 121
            I DT+G++
Sbjct: 58  QIWDTAGQE 66

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKAS--TAVPIVVVGNKSDLADENRQVD 242
           AD  ILVY I D +SF++++     I E K      + +V+VGNK DL  + R V 
Sbjct: 73  ADGAILVYDITDADSFQKVKK---WIKELKQMRGNNISLVIVGNKIDLERQ-RVVS 124

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQ 121
           K++++G   VGKS ++ RFL + + P+   T    ++  +    G  + +D  DT+G++
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 41/171 (23%), Positives = 66/171 (38%), Gaps = 39/171 (22%)

Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
           Y  D+ +      L++  T    EF  +R+LS +     +L +++D+P+S E +      
Sbjct: 37  YIHDIFVDGLAVELSLWDTAGQEEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLA 96

Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTP 268
            IR H         V +V+V  K DL +  R     G    +Y  GL     A +I+   
Sbjct: 97  EIRHH------CPGVKLVLVALKCDLRE-PRNERDRGTHTISYEEGLA---VAKRINACR 146

Query: 269 DQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPA 319
                              ++E SAK N  + + F E    A+V  N  P 
Sbjct: 147 -------------------YLECSAKLNRGVNEAFTEA---ARVALNARPP 175

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 13/94 (13%)

Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
           Y  +V +  K  +L +  T    ++  +R LS    D F++ +++  P SFE +R     
Sbjct: 38  YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYP 97

Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
            +R H          PI++VG K DL D+   ++
Sbjct: 98  EVRHH------CPNTPIILVGTKLDLRDDKDTIE 125

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 59  HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTS 118
            + + K+VV+G  + GK++++H F  + F   Y  T+ E +   F ++   ++L + DTS
Sbjct: 2   QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTS 61

Query: 119 G 119
           G
Sbjct: 62  G 62

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQS 122
           K+V++G    GK++ + R L   F  KY  T+  E+H  DF  N   ++ ++ DT+G++ 
Sbjct: 2   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK 61

Query: 123 GKGLKCG 129
             GL+ G
Sbjct: 62  FGGLRDG 68

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|223606 COG0532, InfB, Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

 Score = 44.5 bits (106), Expect = 1e-04
 Identities = 41/147 (27%), Positives = 55/147 (37%), Gaps = 46/147 (31%)

Query: 178 FPAMRALSISSADAFILVYAIDD---PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDL 234
           F AMRA   S  D  ILV A DD   P + E I   +           VPIVV  NK D 
Sbjct: 68  FTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKA--------AGVPIVVAINKIDK 119

Query: 235 ADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD-W--ENGFVEA 291
            + N                             PD+V  +  E  +  + W  +  FV  
Sbjct: 120 PEAN-----------------------------PDKVKQELQEYGLVPEEWGGDVIFVPV 150

Query: 292 SAKDNTNITQVFKELLVQAKV---KYN 315
           SAK    I ++ + +L+ A+V   K N
Sbjct: 151 SAKTGEGIDELLELILLLAEVLELKAN 177

Length = 509

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 334 SPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRR 390
            P  V  D  E +V  D    + E SAK N+N+ ++F+ L   AK+   +SP+L R+
Sbjct: 127 FPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKLPNEMSPSLHRK 183

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 9/63 (14%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NGVHLKLDILDTS 118
           K++++G   VGK+ ++ RF   TFS +   TI      DF+M      G  +KL I DT+
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTI----GVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 119 GEQ 121
           G++
Sbjct: 61  GQE 63

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQ 121
           K++++G   VGKSS++ RF  +TF      TI  +   +  +++G  +KL I DT+G++
Sbjct: 2   KILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206674 cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 16/70 (22%)

Query: 178 FPAMRALSISSADAFILVYAIDD---PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDL 234
           F  MRA   S  D  ILV A DD   P + E I   +           VPI+V  NK D 
Sbjct: 62  FTNMRARGASVTDIAILVVAADDGVMPQTIEAINHAKA--------ANVPIIVAINKIDK 113

Query: 235 -----ADENR 239
                AD  R
Sbjct: 114 PYGTEADPER 123

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. Length = 169

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 55/254 (21%), Positives = 88/254 (34%), Gaps = 95/254 (37%)

Query: 57  EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILD 116
           E +D   K+V++G   VGK+ ++ RF    F P    TI           GV   +  ++
Sbjct: 2   EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI-----------GVDFMIKTVE 50

Query: 117 TSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTN 176
             GE      K    +W                                      T    
Sbjct: 51  IKGE------KIKLQIWD-------------------------------------TAGQE 67

Query: 177 EFPAMRALSISSADAFILVYAIDDPNSF----EEIRLIRDHIFETKASTAVPIVVVGNKS 232
            F ++      SA+A IL Y I    SF    E +R I     E  A+  V  ++VGNK 
Sbjct: 68  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREI-----EQYANNKVITILVGNKI 122

Query: 233 DLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEAS 292
           DLA+  R+V                            Q   + +++  Q  +   ++E S
Sbjct: 123 DLAER-REV--------------------------SQQRAEEFSDA--QDMY---YLETS 150

Query: 293 AKDNTNITQVFKEL 306
           AK++ N+ ++F +L
Sbjct: 151 AKESDNVEKLFLDL 164

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|232995 TIGR00487, IF-2, translation initiation factor IF-2

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 39/141 (27%), Positives = 56/141 (39%), Gaps = 43/141 (30%)

Query: 178 FPAMRALSISSADAFILVYAIDD---PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDL 234
           F +MRA      D  +LV A DD   P + E I     H    KA+  VPI+V  NK D 
Sbjct: 148 FTSMRARGAKVTDIVVLVVAADDGVMPQTIEAI----SH---AKAAN-VPIIVAINKIDK 199

Query: 235 ADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTE-SVVQVDW--ENGFVEA 291
            + N                             PD+V  + +E  +V  DW  +  FV  
Sbjct: 200 PEAN-----------------------------PDRVKQELSEYGLVPEDWGGDTIFVPV 230

Query: 292 SAKDNTNITQVFKELLVQAKV 312
           SA     I ++   +L+Q++V
Sbjct: 231 SALTGDGIDELLDMILLQSEV 251

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU [Protein synthesis, Translation factors]. Length = 587

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI-EEMHHEDFSMNGVHLKLDILDTSGEQ 121
           K +++G    GKS ++H+F+ N F      TI  E      ++ G  +KL I DT+G++
Sbjct: 2   KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 181 MRALSISSADAFILVYAIDDPNSFEEI---RLIRDHIFETKASTAVPIVVVGNKSDLADE 237
           M    I  A A  LVY I +  SFE +     +   + E ++ T   +V+VGNK+DL + 
Sbjct: 66  MLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNE-ESETKPKMVLVGNKTDL-EH 123

Query: 238 NRQV 241
           NRQV
Sbjct: 124 NRQV 127

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNGVHLKLDILDT 117
            KV+ MG   VGKS II R+    F  KY  TI      D+     S+    ++++  D 
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTI----GIDYGVKKVSVRNKEVRVNFFDL 56

Query: 118 SGEQS 122
           SG   
Sbjct: 57  SGHPE 61

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 19/58 (32%), Positives = 36/58 (62%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120
           +K+V++G   VGKS++  +F+ ++F   +  TIE+ +     ++     LDILDT+G+
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDILDTAGQ 60

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 177 EFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
           E   +    +++ D   LVY   DPNSF     +    F       +P + V  K+DL D
Sbjct: 66  EAILLNDAELAACDVACLVYDSSDPNSFSYCAEVYKKYFMLG---EIPCLFVAAKADL-D 121

Query: 237 ENRQV 241
           E +Q 
Sbjct: 122 EQQQR 126

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 59  HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDT 117
           +D   K+V++G   VGKS+I+ RF  N F  + K TI  E       + G  +K  I DT
Sbjct: 9   YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDT 68

Query: 118 SGEQ 121
           +G++
Sbjct: 69  AGQE 72

Length = 216

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 44/133 (33%)

Query: 182 RALSIS---SADAFILVYAIDDPNSFE--EIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
           R L+ S    A   ILVY +   ++F+  +  L     + T        ++VGNK D   
Sbjct: 63  RTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAV--KMLVGNKIDK-- 118

Query: 237 ENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAK 294
           ENR+V                                 T E   +   ++   F+E SAK
Sbjct: 119 ENREV---------------------------------TREEGQKFARKHNMLFIETSAK 145

Query: 295 DNTNITQVFKELL 307
               + Q F+EL+
Sbjct: 146 TRIGVQQAFEELV 158

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 33/119 (27%)

Query: 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPF 248
           A  FIL+Y I +  SF  ++     I +T +     +++VGNK D+ DE R V    G  
Sbjct: 74  AMGFILMYDITNEESFNAVQDWSTQI-KTYSWDNAQVILVGNKCDMEDE-RVVSAERG-- 129

Query: 249 QTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELL 307
                         Q++   DQ+ ++             F EASAK+N N+ QVF+ L+
Sbjct: 130 -------------RQLA---DQLGFE-------------FFEASAKENINVKQVFERLV 159

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 9/63 (14%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNGVHLKLDILDTS 118
           K++++G   VGKS ++ RF  ++F+P +  TI      DF      ++G  +KL I DT+
Sbjct: 5   KLLLIGDSGVGKSCLLLRFSEDSFNPSFISTI----GIDFKIRTIELDGKKIKLQIWDTA 60

Query: 119 GEQ 121
           G++
Sbjct: 61  GQE 63

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQS 122
           K+V++G    GK++ + R L   F  KY+ TI  E+H  DF  N   ++    DT+G++ 
Sbjct: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74

Query: 123 GKGLKCG 129
             GL+ G
Sbjct: 75  FGGLRDG 81

Length = 219

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSG 119
           K+V++G   VGKS+++ RF  N F+   K TI  E       ++G  +K  I DT+G
Sbjct: 5   KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAG 61

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 9/63 (14%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNGVHLKLDILDTS 118
           K++++G   VGKS ++ RF  +T++  Y  TI      DF      ++G  +KL I DT+
Sbjct: 4   KLLLIGDSGVGKSCLLLRFADDTYTESYISTI----GVDFKIRTIELDGKTVKLQIWDTA 59

Query: 119 GEQ 121
           G++
Sbjct: 60  GQE 62

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 34/120 (28%)

Query: 188 SADAFILVYAIDDPNSFEEI-RLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGG 246
           SA+  I+ Y I   +SFE +   I +   E   ++ V ++++GNK DL ++ R+V     
Sbjct: 75  SANGAIIAYDITRRSSFESVPHWIEE--VEKYGASNVVLLLIGNKCDLEEQ-REVLF--- 128

Query: 247 PFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKEL 306
                                      +   ++ +       +E SAK+++N+ + F  +
Sbjct: 129 ---------------------------EEACTLAEHYGILAVLETSAKESSNVEEAFLLM 161

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 10/66 (15%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHL------KLDILDT 117
           K+VV+G    GK+S+I RF    F   YK+TI      DF    + L       L + D 
Sbjct: 2   KIVVLGDGASGKTSLIRRFAQEGFGKSYKQTI----GLDFFSRRITLPGSLNVTLQVWDI 57

Query: 118 SGEQSG 123
            G+Q G
Sbjct: 58  GGQQIG 63

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 17/58 (29%), Positives = 34/58 (58%)

Query: 62  RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
           R K+V++G  + GK++++  F  ++F   Y  T+ E +   F ++   ++L + DTSG
Sbjct: 1   RCKIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSG 58

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	592
KOG3344|consensus	150		100.0
PTZ00034	124	40S ribosomal protein S10; Provisional	100.0
PF03501	95	S10_plectin: Plectin/S10 domain; InterPro: IPR0053	100.0
KOG0084|consensus	205		100.0
KOG0078|consensus	207		100.0
KOG0092|consensus	200		99.98
KOG0094|consensus	221		99.98
KOG0098|consensus	216		99.98
KOG0394|consensus	210		99.98
KOG0080|consensus	209		99.97
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.97
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.97
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.97
KOG0087|consensus	222		99.97
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.97
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.97
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.97
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.97
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.97
KOG0086|consensus	214		99.96
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.96
KOG0079|consensus	198		99.96
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.96
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.96
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.96
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.96
PTZ00369	189	Ras-like protein; Provisional	99.96
KOG0091|consensus	213		99.96
KOG0093|consensus	193		99.96
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.96
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.96
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.96
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.96
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.96
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.96
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.96
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.96
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.96
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.95
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.95
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.95
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.95
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.95
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.95
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.95
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.95
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.95
KOG0095|consensus	213		99.95
KOG0395|consensus	196		99.95
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.95
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.95
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.95
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.95
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.95
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.95
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.95
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.95
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.95
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.95
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.95
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.95
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.95
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.95
COG5045	105	Ribosomal protein S10E [Translation, ribosomal str	99.95
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.95
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.95
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.95
KOG0088|consensus	218		99.95
PLN03110	216	Rab GTPase; Provisional	99.94
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.94
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.94
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.94
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.94
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.94
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.94
KOG0097|consensus	215		99.94
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.94
PLN03108	210	Rab family protein; Provisional	99.94
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.94
KOG0081|consensus	219		99.94
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.94
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.94
PLN03118	211	Rab family protein; Provisional	99.94
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.94
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.94
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.94
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.93
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.93
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.93
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.93
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.93
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.93
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.93
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.93
KOG0083|consensus	192		99.93
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.93
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.93
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.93
KOG0393|consensus	198		99.92
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.92
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.92
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.92
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.92
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.92
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.92
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.92
PLN00223	181	ADP-ribosylation factor; Provisional	99.91
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.91
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.91
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.91
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.91
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.91
PTZ00133	182	ADP-ribosylation factor; Provisional	99.91
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.9
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.9
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.89
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.89
KOG4252|consensus	246		99.89
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.88
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.88
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.88
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.88
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.88
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.87
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.87
PLN00023	334	GTP-binding protein; Provisional	99.86
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.86
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.85
PTZ00099	176	rab6; Provisional	99.85
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.84
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.83
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.83
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.83
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.83
COG1100	219	GTPase SAR1 and related small G proteins [General	99.83
COG2262	411	HflX GTPases [General function prediction only]	99.82
PRK12299	335	obgE GTPase CgtA; Reviewed	99.82
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.82
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.82
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.82
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.81
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.81
PRK15494	339	era GTPase Era; Provisional	99.8
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.8
PRK03003	472	GTP-binding protein Der; Reviewed	99.8
PRK11058	426	GTPase HflX; Provisional	99.79
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.79
PRK04213	201	GTP-binding protein; Provisional	99.78
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.78
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.78
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.77
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.76
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.76
KOG0073|consensus	185		99.76
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.76
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.76
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.76
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.76
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.76
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.75
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.75
PRK00089	292	era GTPase Era; Reviewed	99.75
PRK03003	472	GTP-binding protein Der; Reviewed	99.75
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.74
KOG3883|consensus	198		99.74
COG1159	298	Era GTPase [General function prediction only]	99.73
cd00881	189	GTP_translation_factor GTP translation factor fami	99.73
PRK12297	424	obgE GTPase CgtA; Reviewed	99.73
COG0486	454	ThdF Predicted GTPase [General function prediction	99.73
PRK12296	500	obgE GTPase CgtA; Reviewed	99.72
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.72
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.72
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.72
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.7
PRK00093	435	GTP-binding protein Der; Reviewed	99.7
KOG0070|consensus	181		99.7
PRK00093	435	GTP-binding protein Der; Reviewed	99.69
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.69
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.69
PRK12298	390	obgE GTPase CgtA; Reviewed	99.69
KOG1673|consensus	205		99.69
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.69
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.69
COG1160	444	Predicted GTPases [General function prediction onl	99.68
KOG0075|consensus	186		99.68
KOG0096|consensus	216		99.67
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.67
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.66
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.65
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.64
COG1160	444	Predicted GTPases [General function prediction onl	99.64
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.64
CHL00189	742	infB translation initiation factor 2; Provisional	99.64
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.63
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.62
KOG4423|consensus	229		99.62
PRK05306	787	infB translation initiation factor IF-2; Validated	99.61
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.61
KOG1423|consensus	379		99.61
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.59
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.59
KOG0071|consensus	180		99.58
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.58
PRK05433	600	GTP-binding protein LepA; Provisional	99.58
KOG0076|consensus	197		99.57
KOG1707|consensus	625		99.57
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.54
KOG1191|consensus	531		99.53
PRK04004	586	translation initiation factor IF-2; Validated	99.52
COG2229	187	Predicted GTPase [General function prediction only	99.51
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.5
KOG1489|consensus	366		99.5
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.49
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.48
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.48
PRK12317	425	elongation factor 1-alpha; Reviewed	99.48
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.46
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.45
KOG0074|consensus	185		99.45
PRK10218	607	GTP-binding protein; Provisional	99.45
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.45
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.45
COG1084	346	Predicted GTPase [General function prediction only	99.43
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.43
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.43
COG0218	200	Predicted GTPase [General function prediction only	99.42
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.42
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.42
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.4
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.39
COG0536	369	Obg Predicted GTPase [General function prediction	99.38
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.37
COG1163	365	DRG Predicted GTPase [General function prediction	99.37
COG3596	296	Predicted GTPase [General function prediction only	99.36
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.35
KOG0072|consensus	182		99.31
PRK09602	396	translation-associated GTPase; Reviewed	99.3
PRK12735	396	elongation factor Tu; Reviewed	99.3
KOG0410|consensus	410		99.3
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.28
PRK12736	394	elongation factor Tu; Reviewed	99.27
CHL00071	409	tufA elongation factor Tu	99.26
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.26
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.25
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.25
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.24
KOG0462|consensus	650		99.24
PRK13351	687	elongation factor G; Reviewed	99.23
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.22
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.21
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.21
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.19
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.19
PLN03127	447	Elongation factor Tu; Provisional	99.19
KOG0090|consensus	238		99.18
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.18
PLN03126	478	Elongation factor Tu; Provisional	99.17
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.17
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.17
PRK00049	396	elongation factor Tu; Reviewed	99.16
KOG0077|consensus	193		99.15
KOG1490|consensus	620		99.15
PLN00043	447	elongation factor 1-alpha; Provisional	99.14
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.14
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.12
KOG1145|consensus	683		99.1
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.07
PRK12739	691	elongation factor G; Reviewed	99.07
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.06
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.05
PTZ00258	390	GTP-binding protein; Provisional	99.04
PTZ00141	446	elongation factor 1- alpha; Provisional	99.03
PRK00007	693	elongation factor G; Reviewed	99.01
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.01
PRK09866	741	hypothetical protein; Provisional	99.01
KOG1532|consensus	366		99.0
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.0
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	98.97
PRK14845	1049	translation initiation factor IF-2; Provisional	98.95
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.94
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.94
PRK12740	668	elongation factor G; Reviewed	98.92
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.91
PRK13768	253	GTPase; Provisional	98.9
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.89
KOG0705|consensus	749		98.88
PRK09601	364	GTP-binding protein YchF; Reviewed	98.84
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.83
KOG1707|consensus	625		98.76
KOG1486|consensus	364		98.76
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	98.75
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.73
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.73
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.71
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.67
PRK07560	731	elongation factor EF-2; Reviewed	98.65
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.65
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.64
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.61
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.61
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.59
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.56
PTZ00416	836	elongation factor 2; Provisional	98.56
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.55
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.52
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.51
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.49
KOG1487|consensus	358		98.47
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.45
KOG1144|consensus	1064		98.43
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.42
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.41
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.39
KOG3905|consensus	473		98.37
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.36
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.34
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.32
PRK12289	352	GTPase RsgA; Reviewed	98.3
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.3
KOG0468|consensus	971		98.29
KOG0461|consensus	522		98.28
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	98.26
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.26
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.22
KOG0458|consensus	603		98.21
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.2
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.18
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.15
KOG0082|consensus	354		98.15
PRK00098	298	GTPase RsgA; Reviewed	98.14
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.1
KOG2486|consensus	320		98.1
PRK12288	347	GTPase RsgA; Reviewed	98.08
KOG3886|consensus	295		98.01
KOG1954|consensus	532		97.97
KOG2655|consensus	366		97.97
COG3276	447	SelB Selenocysteine-specific translation elongatio	97.97
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.95
COG5019	373	CDC3 Septin family protein [Cell division and chro	97.95
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	97.91
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.91
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.91
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	97.9
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.88
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.87
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.78
KOG1491|consensus	391		97.76
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.76
KOG1547|consensus	336		97.75
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.74
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.72
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	97.69
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	97.63
COG1161	322	Predicted GTPases [General function prediction onl	97.61
KOG0448|consensus	749		97.59
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.55
COG5258	527	GTPBP1 GTPase [General function prediction only]	97.53
PRK13796	365	GTPase YqeH; Provisional	97.53
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.51
KOG0447|consensus	980		97.51
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.48
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	97.45
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	97.42
PRK01889	356	GTPase RsgA; Reviewed	97.38
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.37
COG0050	394	TufB GTPases - translation elongation factors [Tra	97.33
PRK12288	347	GTPase RsgA; Reviewed	97.31
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.23
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	97.22
PRK12289	352	GTPase RsgA; Reviewed	97.21
PRK13796	365	GTPase YqeH; Provisional	97.17
KOG1424|consensus	562		97.16
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.12
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.09
KOG3859|consensus	406		97.08
cd03112	158	CobW_like The function of this protein family is u	96.98
COG1162	301	Predicted GTPases [General function prediction onl	96.97
KOG1143|consensus	591		96.96
KOG0467|consensus	887		96.89
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.81
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	96.8
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	96.79
PRK10416	318	signal recognition particle-docking protein FtsY;	96.79
PRK14974	336	cell division protein FtsY; Provisional	96.69
PRK00098	298	GTPase RsgA; Reviewed	96.62
PRK13695	174	putative NTPase; Provisional	96.57
KOG3887|consensus	347		96.5
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	96.39
KOG0466|consensus	466		96.33
KOG2484|consensus	435		96.33
KOG4273|consensus	418		96.3
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	96.21
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	96.16
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.1
cd03114	148	ArgK-like The function of this protein family is u	96.08
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.04
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.0
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	95.85
KOG2485|consensus	335		95.77
COG0523	323	Putative GTPases (G3E family) [General function pr	95.73
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	95.69
KOG0463|consensus	641		95.69
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	95.63
COG1162	301	Predicted GTPases [General function prediction onl	95.55
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	95.44
cd03115	173	SRP The signal recognition particle (SRP) mediates	95.38
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	95.37
PRK11537	318	putative GTP-binding protein YjiA; Provisional	95.31
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	95.31
COG3523	1188	IcmF Type VI protein secretion system component Va	95.27
KOG0460|consensus	449		95.19
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	95.17
cd03111	106	CpaE_like This protein family consists of proteins	95.05
KOG2423|consensus	572		94.97
PRK00771	437	signal recognition particle protein Srp54; Provisi	94.86
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	94.8
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	94.67
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	94.59
KOG0085|consensus	359		94.56
PRK07261	171	topology modulation protein; Provisional	94.44
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	94.44
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	94.44
PRK08118	167	topology modulation protein; Reviewed	94.42
KOG1534|consensus	273		94.35
PRK14738	206	gmk guanylate kinase; Provisional	94.35
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	94.26
KOG0464|consensus	753		94.24
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	94.18
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	94.11
KOG0780|consensus	483		94.02
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	93.91
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	93.89
PF13555	62	AAA_29: P-loop containing region of AAA domain	93.87
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	93.81
smart00382	148	AAA ATPases associated with a variety of cellular	93.64
PF00005	137	ABC_tran: ABC transporter This structure is on hol	93.63
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	93.61
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	93.58
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	93.52
PRK14737	186	gmk guanylate kinase; Provisional	93.52
PRK01889	356	GTPase RsgA; Reviewed	93.42
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	93.35
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	93.35
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	93.33
PRK04195	482	replication factor C large subunit; Provisional	93.27
TIGR00959	428	ffh signal recognition particle protein. This mode	93.21
PRK06217	183	hypothetical protein; Validated	93.21
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	93.15
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	93.06
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	93.05
PF00004	132	AAA: ATPase family associated with various cellula	93.05
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	93.05
PRK08233	182	hypothetical protein; Provisional	93.03
PRK10867	433	signal recognition particle protein; Provisional	93.03
KOG0469|consensus	842		92.99
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	92.8
PRK14530	215	adenylate kinase; Provisional	92.76
TIGR00235	207	udk uridine kinase. Model contains a number of lon	92.71
PRK05480	209	uridine/cytidine kinase; Provisional	92.58
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	92.57
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	92.56
PLN03025	319	replication factor C subunit; Provisional	92.55
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	92.53
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	92.53
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	92.5
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	92.42
KOG0459|consensus	501		92.41
PRK03839	180	putative kinase; Provisional	92.4
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	92.33
cd02036	179	MinD Bacterial cell division requires the formatio	92.27
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	92.24
COG3845	501	ABC-type uncharacterized transport systems, ATPase	92.2
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	92.19
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	92.13
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	92.04
PRK00300	205	gmk guanylate kinase; Provisional	92.03
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	91.79
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	91.71
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	91.69
PF05729	166	NACHT: NACHT domain	91.67
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	91.65
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	91.64
COG3638	258	ABC-type phosphate/phosphonate transport system, A	91.61
COG4525	259	TauB ABC-type taurine transport system, ATPase com	91.55
PRK14532	188	adenylate kinase; Provisional	91.55
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	91.52
KOG3347|consensus	176		91.51
PRK14531	183	adenylate kinase; Provisional	91.44
PRK13949	169	shikimate kinase; Provisional	91.43
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	91.4
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	91.4
KOG0395|consensus	196		91.38
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	91.34
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	91.32
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	91.31
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	91.3
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	91.29
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	91.23
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	91.22
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	91.21

>KOG3344|consensus

Probab=100.00  E-value=8.8e-49  Score=348.56  Aligned_cols=133  Identities=45%  Similarity=0.748  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHhhhccCCChh--hhccccCCCCCcccCCCCCCCCcCceeeeeecceEEEeEcchhHHHHHhhcCCCCCCC
Q psy1524         367 TQVFKELLVQAKVKYNLSPA--LRRRRRQSLPPVQHSPNPSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIV  444 (592)
Q Consensus       367 ~~lf~e~v~~akkd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~y~~l~~~g~~~l~~~l~~~~~~~  444 (592)
                      .+||+|||++||||||+++|  |.++||++++     +||||+|||||||||||||||||||||||+|||+|||||+|||
T Consensus        13 e~Lfkegv~vakkD~~~~kH~el~vpNL~vik-----aMQSl~SrgYvkeqfaWrH~Yw~LTneGi~yLR~YLhLP~EiV   87 (150)
T KOG3344|consen   13 EYLFKEGVLVAKKDFNLPKHPELEVPNLHVIK-----AMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLREYLHLPPEIV   87 (150)
T ss_pred             HHHHHhcceeeccccCCccCcccCCccHHHHH-----HHHHHhhhhhHHhhhhhheeeeeechhHHHHHHHHhcCCcccc
Confidence            47999999999999999964  5555555444     8999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCCccCCCC-CCCCCCCCCCccccCCCCCCCCCCCcCCCC-ceeeeeccccCCC
Q psy1524         445 PSTLKRQARTTDASKVPRQMTQR-PDGGRGADDRMSYRKGPQGVDKKADVGAGS-TEVEFKGYGGLAS  510 (592)
Q Consensus       445 p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~yr~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~  510 (592)
                      |+||++ ++|++.+++|.+..++ |+ ...++||++||+++...    ++|||+ +++||||.|.+++
T Consensus        88 paTl~~-~rP~~~rpr~~g~e~~~p~-~~~r~dR~~yR~~~~~~----~~gA~s~~~~~frg~g~g~~  149 (150)
T KOG3344|consen   88 PATLKR-SRPETGRPRPPGLEGRGPA-DGTRGDRDGYRRGPVPP----EGGAGSGTEPQFRGRGFGRP  149 (150)
T ss_pred             cchhhc-cCCCCCCCCCCCCCCCCcc-cccccchhhhccCCCCC----CCCCCccccccccccCCCCC
Confidence            999999 6887766665554333 32 11238999999987654    567887 6999999666554

>PTZ00034 40S ribosomal protein S10; Provisional

Probab=100.00  E-value=4.9e-39  Score=284.04  Aligned_cols=85  Identities=36%  Similarity=0.606  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHhhhccCCChh--hhccccCCCCCcccCCCCCCCCcCceeeeeecceEEEeEcchhHHHHHhhcCCCCCCC
Q psy1524         367 TQVFKELLVQAKVKYNLSPA--LRRRRRQSLPPVQHSPNPSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIV  444 (592)
Q Consensus       367 ~~lf~e~v~~akkd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~y~~l~~~g~~~l~~~l~~~~~~~  444 (592)
                      .+||+|||++|||||++++|  +.++||+++     ++||||+|||||+|||||||||||||||||||||+|||||+|||
T Consensus        14 e~LfkeGVlvakKd~~~~~h~el~vpNL~Vi-----k~mqSL~Srg~Vke~f~WrhyYw~LT~eGieyLR~yL~LP~eiv   88 (124)
T PTZ00034         14 RYLFKEGVIVCKKDPKGPWHPELNVPNLHVM-----MLMRSLKSRGLVKEQFAWQHYYYYLTDEGIEYLRTYLHLPPDVF   88 (124)
T ss_pred             HHHhhCceEEEecCCCCCCCCccCCccHHHH-----HHHHccccCCceEEEEeeEEEEEEEchHHHHHHHHHhCCCcccC
Confidence            47999999999999999865  444444444     48999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCC
Q psy1524         445 PSTLKRQARTTD  456 (592)
Q Consensus       445 p~~~~~~~~~~~  456 (592)
                      |+||++++++.+
T Consensus        89 P~T~k~~~~~~~  100 (124)
T PTZ00034         89 PATHKKKSVNFE  100 (124)
T ss_pred             chhhcccccCcc
Confidence            999999866643

>PF03501 S10_plectin: Plectin/S10 domain; InterPro: IPR005326 This presumed domain is found at the N terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein

Probab=100.00  E-value=2.2e-38  Score=269.31  Aligned_cols=83  Identities=48%  Similarity=0.875  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHhhhccCCChhhhccccCCCCCccc-CCCCCCCCcCceeeeeecceEEEeEcchhHHHHHhhcCCCCCCCc
Q psy1524         367 TQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQH-SPNPSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVP  445 (592)
Q Consensus       367 ~~lf~e~v~~akkd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~~~y~~l~~~g~~~l~~~l~~~~~~~p  445 (592)
                      .+||+|||++||||+++++|-+   + ++||+++ ++||||+|||||||||||||||||||||||||||+|||||+||||
T Consensus        11 e~LFkeGVlvakKD~~~~~H~e---l-~vpNL~V~k~mqSL~SrgyVke~faWrh~Yw~LT~eGIeyLR~yL~LP~eivP   86 (95)
T PF03501_consen   11 EYLFKEGVLVAKKDFHMPKHPE---L-NVPNLHVIKAMQSLKSRGYVKEQFAWRHYYWYLTNEGIEYLREYLHLPAEIVP   86 (95)
T ss_dssp             HHHHHHSEEEEES-TTSCS-TT---T-SSBHHHHHHHHHHHHHCTSEEEEECTTEEEEEE-HHHHHHHHHHC-SSTT--T
T ss_pred             HHHhhcceEEEEccCCCCCCCc---c-CCCcHHHHHHHhcccchhhhcCeecceEEEEEEcchhHHHHHHHhCCChhhCc
Confidence            4799999999999999996422   1 4555555 489999999999999999999999999999999999999999999


Q ss_pred             cccccccc
Q psy1524         446 STLKRQAR  453 (592)
Q Consensus       446 ~~~~~~~~  453 (592)
                      +||+++++
T Consensus        87 aTlk~~~~   94 (95)
T PF03501_consen   87 ATLKKSRR   94 (95)
T ss_dssp             CCCS-S--
T ss_pred             HHhccccC
Confidence            99999754

This domain may be involved in RNA binding.; PDB: 2XZM_7 2XZN_7 3U5C_K 3U5G_K.

>KOG0084|consensus

Probab=100.00  E-value=1.6e-34  Score=275.76  Aligned_cols=172  Identities=30%  Similarity=0.491  Sum_probs=161.7

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ..++.+||+|+|++|||||+|+.||..+.|.+.|..|++ |+..+++.++|+.++|+||||+|+                
T Consensus         5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ----------------   68 (205)
T KOG0084|consen    5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQ----------------   68 (205)
T ss_pred             ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeecccc----------------
Confidence            458899999999999999999999999999999999999 999999999999999999999999                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             |+|+++...||++|++||+|||+|+.+||..+..|+.++.+
T Consensus        69 ---------------------------------------ERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~  109 (205)
T KOG0084|consen   69 ---------------------------------------ERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDR  109 (205)
T ss_pred             ---------------------------------------HHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhh
Confidence                                                   99999999999999999999999999999999999999998


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCe-EEEcccCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG-FVEASAKD  295 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~-~~EvSAkt  295 (592)
                      + ...++|.+|||||||+.+.                               +.|+.++++.++. ..+++ |+|+|||+
T Consensus       110 ~-~~~~v~~lLVGNK~Dl~~~-------------------------------~~v~~~~a~~fa~-~~~~~~f~ETSAK~  156 (205)
T KOG0084|consen  110 Y-ASENVPKLLVGNKCDLTEK-------------------------------RVVSTEEAQEFAD-ELGIPIFLETSAKD  156 (205)
T ss_pred             h-ccCCCCeEEEeeccccHhh-------------------------------eecCHHHHHHHHH-hcCCcceeecccCC
Confidence            7 5678899999999999987                               8999999999998 55666 99999999


Q ss_pred             CccHHHHHHHHHHHHHHhcccC
Q psy1524         296 NTNITQVFKELLVQAKVKYNLS  317 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~~~~~~~  317 (592)
                      +.||+++|..|...+..++...
T Consensus       157 ~~NVe~~F~~la~~lk~~~~~~  178 (205)
T KOG0084|consen  157 STNVEDAFLTLAKELKQRKGLH  178 (205)
T ss_pred             ccCHHHHHHHHHHHHHHhcccC
Confidence            9999999999999997765543

>KOG0078|consensus

Probab=100.00  E-value=1.4e-32  Score=265.80  Aligned_cols=171  Identities=32%  Similarity=0.481  Sum_probs=162.3

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ..++.+||+++|++|||||+|+.||..+.|...+..|++ |+..+++.+++..+.+++|||+|+                
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQ----------------   71 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQ----------------   71 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccc----------------
Confidence            668899999999999999999999999999999999999 999999999999999999999999                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             ++|+.+...|+++|+++++|||+++..||+++..|+..+.+
T Consensus        72 ---------------------------------------erf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e  112 (207)
T KOG0078|consen   72 ---------------------------------------ERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDE  112 (207)
T ss_pred             ---------------------------------------hhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHh
Confidence                                                   99999999999999999999999999999999999999998


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      + ...++|++|||||+|+..+                               |+|+.++++++|. ..++.|+|||||+|
T Consensus       113 ~-a~~~v~~~LvGNK~D~~~~-------------------------------R~V~~e~ge~lA~-e~G~~F~EtSAk~~  159 (207)
T KOG0078|consen  113 H-ASDDVVKILVGNKCDLEEK-------------------------------RQVSKERGEALAR-EYGIKFFETSAKTN  159 (207)
T ss_pred             h-CCCCCcEEEeecccccccc-------------------------------ccccHHHHHHHHH-HhCCeEEEccccCC
Confidence            7 5679999999999999876                               9999999999998 66999999999999


Q ss_pred             ccHHHHHHHHHHHHHHhccc
Q psy1524         297 TNITQVFKELLVQAKVKYNL  316 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~~~~~~  316 (592)
                      .||+++|..|++.++.+...
T Consensus       160 ~NI~eaF~~La~~i~~k~~~  179 (207)
T KOG0078|consen  160 FNIEEAFLSLARDILQKLED  179 (207)
T ss_pred             CCHHHHHHHHHHHHHhhcch
Confidence            99999999999999875443

>KOG0092|consensus

Probab=99.98  E-value=3.3e-32  Score=259.16  Aligned_cols=170  Identities=27%  Similarity=0.459  Sum_probs=157.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ...+||+++|+.+||||||+-||+.+.|.+...+||+ -+.++.+.+++..++|.||||+|+                  
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQ------------------   64 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQ------------------   64 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCc------------------
Confidence            4679999999999999999999999999999999999 788999999999999999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           |+|.++.++||++|+++|+|||+++.+||..++.|+.+|.+. 
T Consensus        65 -------------------------------------ERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~-  106 (200)
T KOG0092|consen   65 -------------------------------------ERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQ-  106 (200)
T ss_pred             -------------------------------------ccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhh-
Confidence                                                 999999999999999999999999999999999999999987 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      ..+++-|.|||||+||.+.                               |+|..+++..++. ..+..|||+|||||.|
T Consensus       107 ~~~~~vialvGNK~DL~~~-------------------------------R~V~~~ea~~yAe-~~gll~~ETSAKTg~N  154 (200)
T KOG0092|consen  107 ASPNIVIALVGNKADLLER-------------------------------REVEFEEAQAYAE-SQGLLFFETSAKTGEN  154 (200)
T ss_pred             CCCCeEEEEecchhhhhhc-------------------------------ccccHHHHHHHHH-hcCCEEEEEecccccC
Confidence            4477888899999999986                               8999999999998 5677899999999999


Q ss_pred             HHHHHHHHHHHHHHhcccC
Q psy1524         299 ITQVFKELLVQAKVKYNLS  317 (592)
Q Consensus       299 VeeLf~~Li~~i~~~~~~~  317 (592)
                      |+++|..|.+.+.......
T Consensus       155 v~~if~~Ia~~lp~~~~~~  173 (200)
T KOG0092|consen  155 VNEIFQAIAEKLPCSDPQE  173 (200)
T ss_pred             HHHHHHHHHHhccCccccc
Confidence            9999999999996554443

>KOG0094|consensus

Probab=99.98  E-value=6.7e-32  Score=257.06  Aligned_cols=167  Identities=30%  Similarity=0.520  Sum_probs=155.9

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      .+.+||+++|+.+|||||||+||+.+.|...|.+||+ |+..+++.+.+..+.|++|||+||                  
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQ------------------   81 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ------------------   81 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccH------------------
Confidence            4459999999999999999999999999999999999 999999999999999999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           |+|+.+.+.|++++.++|+|||++|..||++...|++.+....
T Consensus        82 -------------------------------------ERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~  124 (221)
T KOG0094|consen   82 -------------------------------------ERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRER  124 (221)
T ss_pred             -------------------------------------HHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhcc
Confidence                                                 9999999999999999999999999999999999999999876


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      +..++-|+|||||.||.++                               |+++.++++..++ ..+..|+++||+.|+|
T Consensus       125 gs~~viI~LVGnKtDL~dk-------------------------------rqvs~eEg~~kAk-el~a~f~etsak~g~N  172 (221)
T KOG0094|consen  125 GSDDVIIFLVGNKTDLSDK-------------------------------RQVSIEEGERKAK-ELNAEFIETSAKAGEN  172 (221)
T ss_pred             CCCceEEEEEcccccccch-------------------------------hhhhHHHHHHHHH-HhCcEEEEecccCCCC
Confidence            6667899999999999988                               8999999998887 5666899999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy1524         299 ITQVFKELLVQAKVK  313 (592)
Q Consensus       299 VeeLf~~Li~~i~~~  313 (592)
                      |.++|..|...+...
T Consensus       173 Vk~lFrrIaa~l~~~  187 (221)
T KOG0094|consen  173 VKQLFRRIAAALPGM  187 (221)
T ss_pred             HHHHHHHHHHhccCc
Confidence            999999988777443

>KOG0098|consensus

Probab=99.98  E-value=1.6e-31  Score=252.60  Aligned_cols=170  Identities=26%  Similarity=0.388  Sum_probs=160.4

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      +.+.+|++++|+.|||||+|+.||+...|.+.+..|++ ++--+.+.+|+++++|+||||+|+                 
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGq-----------------   65 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQ-----------------   65 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCc-----------------
Confidence            46789999999999999999999999999999999999 888999999999999999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            |.|+++...||+.|.++|||||+++++||.++..|+..++.+
T Consensus        66 --------------------------------------e~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~  107 (216)
T KOG0098|consen   66 --------------------------------------ESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQH  107 (216)
T ss_pred             --------------------------------------HHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHh
Confidence                                                  999999999999999999999999999999999999999887


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                       ..++.-|+|+|||+||...                               |.|+.++++++|+ ..+..|+|+||++++
T Consensus       108 -~~~NmvImLiGNKsDL~~r-------------------------------R~Vs~EEGeaFA~-ehgLifmETSakt~~  154 (216)
T KOG0098|consen  108 -SNENMVIMLIGNKSDLEAR-------------------------------REVSKEEGEAFAR-EHGLIFMETSAKTAE  154 (216)
T ss_pred             -cCCCcEEEEEcchhhhhcc-------------------------------ccccHHHHHHHHH-HcCceeehhhhhhhh
Confidence             5789999999999999887                               8999999999999 478889999999999


Q ss_pred             cHHHHHHHHHHHHHHhccc
Q psy1524         298 NITQVFKELLVQAKVKYNL  316 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~~~~  316 (592)
                      ||+|+|......|..+.+.
T Consensus       155 ~VEEaF~nta~~Iy~~~q~  173 (216)
T KOG0098|consen  155 NVEEAFINTAKEIYRKIQD  173 (216)
T ss_pred             hHHHHHHHHHHHHHHHHHh
Confidence            9999999999999876554

>KOG0394|consensus

Probab=99.98  E-value=4.8e-32  Score=255.75  Aligned_cols=172  Identities=27%  Similarity=0.498  Sum_probs=159.5

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      +...+||+|+|++|||||||+|+|++.+|...|..|++ |+.++.+.+|+..+.++||||+|+                 
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQ-----------------   68 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQ-----------------   68 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccH-----------------
Confidence            35679999999999999999999999999999999999 999999999999999999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            |+|.++...+|++||.+++|||++++.||+.+..|.+++..+
T Consensus        69 --------------------------------------ERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~q  110 (210)
T KOG0394|consen   69 --------------------------------------ERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQ  110 (210)
T ss_pred             --------------------------------------HHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHh
Confidence                                                  999999999999999999999999999999999999999887


Q ss_pred             hc---CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524         218 KA---STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK  294 (592)
Q Consensus       218 ~~---~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk  294 (592)
                      ..   ...-|+||+|||+|+....                             .|+|+...++.+++...+++|||+|||
T Consensus       111 a~~~~Pe~FPFVilGNKiD~~~~~-----------------------------~r~VS~~~Aq~WC~s~gnipyfEtSAK  161 (210)
T KOG0394|consen  111 ASPQDPETFPFVILGNKIDVDGGK-----------------------------SRQVSEKKAQTWCKSKGNIPYFETSAK  161 (210)
T ss_pred             cCCCCCCcccEEEEcccccCCCCc-----------------------------cceeeHHHHHHHHHhcCCceeEEeccc
Confidence            53   2456999999999997641                             289999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHHHhc
Q psy1524         295 DNTNITQVFKELLVQAKVKY  314 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i~~~~  314 (592)
                      ...||+++|+.+.+.++..-
T Consensus       162 ~~~NV~~AFe~ia~~aL~~E  181 (210)
T KOG0394|consen  162 EATNVDEAFEEIARRALANE  181 (210)
T ss_pred             ccccHHHHHHHHHHHHHhcc
Confidence            99999999999999997654

>KOG0080|consensus

Probab=99.97  E-value=3.8e-31  Score=244.26  Aligned_cols=173  Identities=28%  Similarity=0.419  Sum_probs=161.2

Q ss_pred             CCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524          57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP  135 (592)
Q Consensus        57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~  135 (592)
                      ......+||++||++|||||||+-||+.+.|.+....|++ |+..+.+.+++..+++.||||+|+               
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGq---------------   70 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQ---------------   70 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccch---------------
Confidence            3457789999999999999999999999999998888899 999999999999999999999999               


Q ss_pred             CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524         136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF  215 (592)
Q Consensus       136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~  215 (592)
                                                              |+|+.+.+.||++|.++|+|||++.+++|.++..|+.++.
T Consensus        71 ----------------------------------------ErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld  110 (209)
T KOG0080|consen   71 ----------------------------------------ERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELD  110 (209)
T ss_pred             ----------------------------------------HhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHH
Confidence                                                    9999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524         216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD  295 (592)
Q Consensus       216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt  295 (592)
                      .+..++++..++||||+|....                               |.|+.+++..+++ .+.+-|+|||||+
T Consensus       111 ~Ystn~diikmlVgNKiDkes~-------------------------------R~V~reEG~kfAr-~h~~LFiE~SAkt  158 (209)
T KOG0080|consen  111 LYSTNPDIIKMLVGNKIDKESE-------------------------------RVVDREEGLKFAR-KHRCLFIECSAKT  158 (209)
T ss_pred             hhcCCccHhHhhhcccccchhc-------------------------------ccccHHHHHHHHH-hhCcEEEEcchhh
Confidence            8877888999999999997655                               8999999999998 6778899999999


Q ss_pred             CccHHHHHHHHHHHHHHhccc
Q psy1524         296 NTNITQVFKELLVQAKVKYNL  316 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~~~~~~  316 (592)
                      .+||+.+|++++.+|.+....
T Consensus       159 ~~~V~~~FeelveKIi~tp~l  179 (209)
T KOG0080|consen  159 RENVQCCFEELVEKIIETPSL  179 (209)
T ss_pred             hccHHHHHHHHHHHHhcCcch
Confidence            999999999999999766544

>cd04120 Rab12 Rab12 subfamily

Probab=99.97  E-value=5e-30  Score=252.87  Aligned_cols=164  Identities=29%  Similarity=0.461  Sum_probs=148.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +.|+++|+.|||||||++||+.+.|.+.+.+|++ ++..+.+.+++..+.++||||+|+                     
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGq---------------------   59 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQ---------------------   59 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCc---------------------
Confidence            4799999999999999999999999999999988 777788899999999999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        ++|+.++..|+++||++|+|||++++.||+++..|+..+... ...
T Consensus        60 ----------------------------------e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~-~~~  104 (202)
T cd04120          60 ----------------------------------ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY-ASE  104 (202)
T ss_pred             ----------------------------------hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCC
Confidence                                              899999999999999999999999999999999999987665 456


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|+||||||+||...                               +.++.++++.+++...+..|++|||++|.||++
T Consensus       105 ~~piilVgNK~DL~~~-------------------------------~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e  153 (202)
T cd04120         105 DAELLLVGNKLDCETD-------------------------------REISRQQGEKFAQQITGMRFCEASAKDNFNVDE  153 (202)
T ss_pred             CCcEEEEEECcccccc-------------------------------cccCHHHHHHHHHhcCCCEEEEecCCCCCCHHH
Confidence            7999999999999755                               678888888888755567899999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy1524         302 VFKELLVQAKVK  313 (592)
Q Consensus       302 Lf~~Li~~i~~~  313 (592)
                      +|+++++.+...
T Consensus       154 ~F~~l~~~~~~~  165 (202)
T cd04120         154 IFLKLVDDILKK  165 (202)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04121 Rab40 Rab40 subfamily

Probab=99.97  E-value=5.7e-30  Score=249.89  Aligned_cols=167  Identities=28%  Similarity=0.367  Sum_probs=150.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ++.+||+|+|+.|||||||+.+|+.+.|.+.+.+|++ ++....+.+++..+.++||||+|+                  
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~------------------   65 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQ------------------   65 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCc------------------
Confidence            4679999999999999999999999999888888876 566777888999999999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           ++|..++..++++||++|+|||++++.||+++..|+.++... 
T Consensus        66 -------------------------------------~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~-  107 (189)
T cd04121          66 -------------------------------------GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEH-  107 (189)
T ss_pred             -------------------------------------HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-
Confidence                                                 889999999999999999999999999999999999999765 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                       .+++|+||||||+||...                               +.++.++++.+++ ..+..|+||||++|.|
T Consensus       108 -~~~~piilVGNK~DL~~~-------------------------------~~v~~~~~~~~a~-~~~~~~~e~SAk~g~~  154 (189)
T cd04121         108 -APGVPKILVGNRLHLAFK-------------------------------RQVATEQAQAYAE-RNGMTFFEVSPLCNFN  154 (189)
T ss_pred             -CCCCCEEEEEECccchhc-------------------------------cCCCHHHHHHHHH-HcCCEEEEecCCCCCC
Confidence             368999999999999765                               6788899999997 4567899999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q psy1524         299 ITQVFKELLVQAKVKYN  315 (592)
Q Consensus       299 VeeLf~~Li~~i~~~~~  315 (592)
                      |+++|+++++.+...+.
T Consensus       155 V~~~F~~l~~~i~~~~~  171 (189)
T cd04121         155 ITESFTELARIVLMRHG  171 (189)
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999998866544

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.97  E-value=5.3e-30  Score=248.52  Aligned_cols=176  Identities=24%  Similarity=0.437  Sum_probs=149.7

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+++|++|||||||+++|+.+.|.+.+.||+.+.+.+.+.+++..+.++||||+|+                   
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~-------------------   63 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS-------------------   63 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCc-------------------
Confidence            4578999999999999999999999999999999999777788889999999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH-HHHHHHHHHhh
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIFETK  218 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L~~~~  218 (592)
                                                          ++|..++..++++||++|+|||++++.||+++ ..|+..+.+. 
T Consensus        64 ------------------------------------e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~-  106 (182)
T cd04172          64 ------------------------------------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-  106 (182)
T ss_pred             ------------------------------------hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH-
Confidence                                                88999999999999999999999999999998 7899998775 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                       .++.|+||||||+||.+....           +        ........+.++.++++++++....+.|+||||++|.|
T Consensus       107 -~~~~piilVgNK~DL~~~~~~-----------~--------~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n  166 (182)
T cd04172         107 -CPNTKMLLVGCKSDLRTDLTT-----------L--------VELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN  166 (182)
T ss_pred             -CCCCCEEEEeEChhhhcChhh-----------H--------HHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCC
Confidence             367999999999999653100           0        00000112578999999999855446899999999998


Q ss_pred             -HHHHHHHHHHHHH
Q psy1524         299 -ITQVFKELLVQAK  311 (592)
Q Consensus       299 -VeeLf~~Li~~i~  311 (592)
                       |+++|..+++.+.
T Consensus       167 ~v~~~F~~~~~~~~  180 (182)
T cd04172         167 SVRDIFHVATLACV  180 (182)
T ss_pred             CHHHHHHHHHHHHh
Confidence             9999999998653

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0087|consensus

Probab=99.97  E-value=3.5e-30  Score=248.41  Aligned_cols=172  Identities=31%  Similarity=0.447  Sum_probs=161.6

Q ss_pred             CCCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCccccccccc
Q psy1524          55 SSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLW  133 (592)
Q Consensus        55 ~~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~  133 (592)
                      .++..++.+||+++|+++||||-|+.||..+.|.-+...|++ ++.++.+.++++.++.+||||+|+             
T Consensus         7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQ-------------   73 (222)
T KOG0087|consen    7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQ-------------   73 (222)
T ss_pred             CccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccch-------------
Confidence            456779999999999999999999999999999999999999 899999999999999999999999             


Q ss_pred             CCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHH
Q psy1524         134 GPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH  213 (592)
Q Consensus       134 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~  213 (592)
                                                                |+|+++...||++|.++++|||++.+.+|+++..|+.+
T Consensus        74 ------------------------------------------ERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~E  111 (222)
T KOG0087|consen   74 ------------------------------------------ERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKE  111 (222)
T ss_pred             ------------------------------------------hhhccccchhhcccceeEEEEechhHHHHHHHHHHHHH
Confidence                                                      99999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEccc
Q psy1524         214 IFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASA  293 (592)
Q Consensus       214 L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSA  293 (592)
                      |+.+ ..++++|+|||||+||...                               |.|..++++.++. .....|+|+||
T Consensus       112 LRdh-ad~nivimLvGNK~DL~~l-------------------------------raV~te~~k~~Ae-~~~l~f~EtSA  158 (222)
T KOG0087|consen  112 LRDH-ADSNIVIMLVGNKSDLNHL-------------------------------RAVPTEDGKAFAE-KEGLFFLETSA  158 (222)
T ss_pred             HHhc-CCCCeEEEEeecchhhhhc-------------------------------cccchhhhHhHHH-hcCceEEEecc
Confidence            9998 6789999999999999876                               8899999999998 66777999999


Q ss_pred             CCCccHHHHHHHHHHHHHHhc
Q psy1524         294 KDNTNITQVFKELLVQAKVKY  314 (592)
Q Consensus       294 ktg~gVeeLf~~Li~~i~~~~  314 (592)
                      ..+.||+++|+.++.+|....
T Consensus       159 l~~tNVe~aF~~~l~~I~~~v  179 (222)
T KOG0087|consen  159 LDATNVEKAFERVLTEIYKIV  179 (222)
T ss_pred             cccccHHHHHHHHHHHHHHHH
Confidence            999999999999999886543

>cd04133 Rop_like Rop subfamily

Probab=99.97  E-value=1.1e-29  Score=245.00  Aligned_cols=170  Identities=25%  Similarity=0.426  Sum_probs=146.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      +||+++|++|||||||+.+|+.+.|.+.+.+|+++.+...+.+++..+.++||||+|+                      
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~----------------------   59 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQ----------------------   59 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCC----------------------
Confidence            6999999999999999999999999999999999777777888999999999999999                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH-HHHHHHHHHhhcCC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIFETKAST  221 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L~~~~~~~  221 (592)
                                                       ++|..++..++++||++|+|||+++++||+++ ..|+..+...  ..
T Consensus        60 ---------------------------------~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~--~~  104 (176)
T cd04133          60 ---------------------------------EDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHY--AP  104 (176)
T ss_pred             ---------------------------------ccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHh--CC
Confidence                                             88899999999999999999999999999998 6899988765  35


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|+||||||+||.+.....                     ......+.++.+++..+++......|+||||++|.||++
T Consensus       105 ~~piilvgnK~Dl~~~~~~~---------------------~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~  163 (176)
T cd04133         105 NVPIVLVGTKLDLRDDKQYL---------------------ADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKA  163 (176)
T ss_pred             CCCEEEEEeChhhccChhhh---------------------hhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHH
Confidence            79999999999996541000                     001112568899999999854444699999999999999


Q ss_pred             HHHHHHHHH
Q psy1524         302 VFKELLVQA  310 (592)
Q Consensus       302 Lf~~Li~~i  310 (592)
                      +|+.+++.+
T Consensus       164 ~F~~~~~~~  172 (176)
T cd04133         164 VFDAAIKVV  172 (176)
T ss_pred             HHHHHHHHH
Confidence            999999876

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04131 Rnd Rnd subfamily

Probab=99.97  E-value=1.8e-29  Score=243.77  Aligned_cols=174  Identities=22%  Similarity=0.397  Sum_probs=146.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      ++||+++|++|||||||+++|+.+.|...+.+|+.+.+.+.+.+++..+.++||||+|+                     
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~---------------------   59 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGS---------------------   59 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCc---------------------
Confidence            47999999999999999999999999999999998777778889999999999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH-HHHHHHHHHhhcC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIFETKAS  220 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L~~~~~~  220 (592)
                                                        +.|..++..++++||++|+|||++++.||+++ ..|+..+.+.  .
T Consensus        60 ----------------------------------~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~--~  103 (178)
T cd04131          60 ----------------------------------PYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEF--C  103 (178)
T ss_pred             ----------------------------------hhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHH--C
Confidence                                              78888889999999999999999999999996 7899988875  3


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc-H
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN-I  299 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g-V  299 (592)
                      ++.|+||||||+||.++....        ..+           .....+.++.+++.++++......|+||||++|+| |
T Consensus       104 ~~~~iilVgnK~DL~~~~~~~--------~~~-----------~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v  164 (178)
T cd04131         104 PNTKVLLVGCKTDLRTDLSTL--------MEL-----------SHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSV  164 (178)
T ss_pred             CCCCEEEEEEChhhhcChhHH--------HHH-----------HhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCH
Confidence            689999999999996431000        000           00112568999999999854445899999999995 9


Q ss_pred             HHHHHHHHHHHH
Q psy1524         300 TQVFKELLVQAK  311 (592)
Q Consensus       300 eeLf~~Li~~i~  311 (592)
                      +++|..+++.++
T Consensus       165 ~~~F~~~~~~~~  176 (178)
T cd04131         165 RDIFHVATMACL  176 (178)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.97  E-value=2.5e-29  Score=240.68  Aligned_cols=164  Identities=30%  Similarity=0.511  Sum_probs=148.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      .+||+|+|++|||||||+++|+.+.|...+.+|+++.+...+.+++..+.++||||+|+                     
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~---------------------   60 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQ---------------------   60 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCc---------------------
Confidence            47999999999999999999999999988999998777777888999999999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        ++|..++..++..+|++|+|||++++.||+.+..|+..+.+.....
T Consensus        61 ----------------------------------~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~  106 (172)
T cd04141          61 ----------------------------------AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTE  106 (172)
T ss_pred             ----------------------------------hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCC
Confidence                                              7889999999999999999999999999999999988887764456


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|+|+|+||+|+...                               +.++.+++..+++ ..+++|+||||++|.||++
T Consensus       107 ~~piilvgNK~Dl~~~-------------------------------~~v~~~~~~~~a~-~~~~~~~e~Sa~~~~~v~~  154 (172)
T cd04141         107 DIPLVLVGNKVDLESQ-------------------------------RQVTTEEGRNLAR-EFNCPFFETSAALRHYIDD  154 (172)
T ss_pred             CCCEEEEEEChhhhhc-------------------------------CccCHHHHHHHHH-HhCCEEEEEecCCCCCHHH
Confidence            8999999999998765                               6788888988887 4577899999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         302 VFKELLVQAKV  312 (592)
Q Consensus       302 Lf~~Li~~i~~  312 (592)
                      +|+++++.+..
T Consensus       155 ~f~~l~~~~~~  165 (172)
T cd04141         155 AFHGLVREIRR  165 (172)
T ss_pred             HHHHHHHHHHH
Confidence            99999998854

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.97  E-value=7.8e-29  Score=249.30  Aligned_cols=180  Identities=19%  Similarity=0.338  Sum_probs=151.2

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .....+||+|+|++|||||||+++|+.+.|.+.|.+|+++.+...+.+++..+.++||||+|+                 
T Consensus         9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~-----------------   71 (232)
T cd04174           9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGS-----------------   71 (232)
T ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCc-----------------
Confidence            345679999999999999999999999999999999999777777889999999999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH-HHHHHHHHH
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIFE  216 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L~~  216 (592)
                                                            ++|..+...++++||++|+|||++++.||+++ ..|+..+..
T Consensus        72 --------------------------------------e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~  113 (232)
T cd04174          72 --------------------------------------PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMD  113 (232)
T ss_pred             --------------------------------------hhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHH
Confidence                                                  88999999999999999999999999999985 789998887


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      .  .++.|+||||||+||.......           .        .......+.|+.++++.+++......|+||||++|
T Consensus       114 ~--~~~~piilVgNK~DL~~~~~~~-----------~--------~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg  172 (232)
T cd04174         114 Y--CPSTRILLIGCKTDLRTDLSTL-----------M--------ELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTS  172 (232)
T ss_pred             h--CCCCCEEEEEECcccccccchh-----------h--------hhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence            5  3578999999999986531100           0        00011236799999999998543337999999999


Q ss_pred             c-cHHHHHHHHHHHHHHh
Q psy1524         297 T-NITQVFKELLVQAKVK  313 (592)
Q Consensus       297 ~-gVeeLf~~Li~~i~~~  313 (592)
                      + ||+++|..++..+.+.
T Consensus       173 ~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         173 EKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CcCHHHHHHHHHHHHHHh
Confidence            8 8999999999988654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01875 RhoG RhoG subfamily

Probab=99.97  E-value=4.2e-29  Score=243.27  Aligned_cols=176  Identities=24%  Similarity=0.433  Sum_probs=147.9

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ..+||+++|++|||||||+.+|+.+.|.+.+.+|+++.+...+.+++..+.++||||+|+                    
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--------------------   61 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQ--------------------   61 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCc--------------------
Confidence            458999999999999999999999999999999999877777788999999999999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhhc
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETKA  219 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~~  219 (592)
                                                         ++|..++..++++||++|+|||++++.||+++. .|+..+...  
T Consensus        62 -----------------------------------e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~--  104 (191)
T cd01875          62 -----------------------------------EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH--  104 (191)
T ss_pred             -----------------------------------hhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--
Confidence                                               899999999999999999999999999999997 477777653  


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..++|+||||||+||.+......        .+           .....+.++.+++..+++......|+||||++|.||
T Consensus       105 ~~~~piilvgNK~DL~~~~~~~~--------~~-----------~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v  165 (191)
T cd01875         105 CPNVPILLVGTKKDLRNDADTLK--------KL-----------KEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGV  165 (191)
T ss_pred             CCCCCEEEEEeChhhhcChhhHH--------HH-----------hhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCH
Confidence            35899999999999965411000        00           001125678889999988555568999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1524         300 TQVFKELLVQAKV  312 (592)
Q Consensus       300 eeLf~~Li~~i~~  312 (592)
                      +++|+.+++.+..
T Consensus       166 ~e~f~~l~~~~~~  178 (191)
T cd01875         166 KEVFAEAVRAVLN  178 (191)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998853

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG0086|consensus

Probab=99.96  E-value=1.7e-29  Score=231.51  Aligned_cols=175  Identities=28%  Similarity=0.384  Sum_probs=162.3

Q ss_pred             CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524          56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG  134 (592)
Q Consensus        56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~  134 (592)
                      ++.+++.+|++++|+.|.|||+|+.+|+.++|.++...|++ ++-++.+.+.++.++++||||+|+              
T Consensus         3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQ--------------   68 (214)
T KOG0086|consen    3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQ--------------   68 (214)
T ss_pred             chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccH--------------
Confidence            34578999999999999999999999999999999999999 899999999999999999999999              


Q ss_pred             CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524         135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI  214 (592)
Q Consensus       135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L  214 (592)
                                                               |+|++..+.||++|.+.++|||+++++||+.+..|+..+
T Consensus        69 -----------------------------------------ErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~Da  107 (214)
T KOG0086|consen   69 -----------------------------------------ERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDA  107 (214)
T ss_pred             -----------------------------------------HHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHH
Confidence                                                     999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524         215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK  294 (592)
Q Consensus       215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk  294 (592)
                      ... ..+++-||++|||.||..+                               |+|+..++..+++ .....+.|+||+
T Consensus       108 R~l-As~nIvviL~GnKkDL~~~-------------------------------R~VtflEAs~Faq-Enel~flETSa~  154 (214)
T KOG0086|consen  108 RTL-ASPNIVVILCGNKKDLDPE-------------------------------REVTFLEASRFAQ-ENELMFLETSAL  154 (214)
T ss_pred             Hhh-CCCcEEEEEeCChhhcChh-------------------------------hhhhHHHHHhhhc-ccceeeeeeccc
Confidence            876 6788899999999999887                               8999999999998 556679999999


Q ss_pred             CCccHHHHHHHHHHHHHHhcccCh
Q psy1524         295 DNTNITQVFKELLVQAKVKYNLSP  318 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i~~~~~~~~  318 (592)
                      +|+||+|.|-.+.+.|+.+....+
T Consensus       155 TGeNVEEaFl~c~~tIl~kIE~GE  178 (214)
T KOG0086|consen  155 TGENVEEAFLKCARTILNKIESGE  178 (214)
T ss_pred             ccccHHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999987765443

>cd04136 Rap_like Rap-like subfamily

Probab=99.96  E-value=8.8e-29  Score=231.52  Aligned_cols=161  Identities=39%  Similarity=0.669  Sum_probs=143.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      +||+|+|++|||||||+++|+.+.|...+.+|+.+.+.+.+.+++..+.++||||+|+                      
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~----------------------   59 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGT----------------------   59 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCc----------------------
Confidence            7999999999999999999999999988999998888888889999999999999999                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA  222 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~  222 (592)
                                                       ++|..++..+++++|++++|||++++.+|+++..|+..+.......+
T Consensus        60 ---------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~  106 (163)
T cd04136          60 ---------------------------------EQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTEN  106 (163)
T ss_pred             ---------------------------------cccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence                                             88889999999999999999999999999999999999987655568


Q ss_pred             CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHH
Q psy1524         223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV  302 (592)
Q Consensus       223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeL  302 (592)
                      +|+|+|+||+|+...                               +.++.+++..+++ .+..++++|||++|.||+++
T Consensus       107 ~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l  154 (163)
T cd04136         107 VPMVLVGNKCDLEDE-------------------------------RVVSREEGQALAR-QWGCPFYETSAKSKINVDEV  154 (163)
T ss_pred             CCEEEEEECcccccc-------------------------------ceecHHHHHHHHH-HcCCeEEEecCCCCCCHHHH
Confidence            999999999999754                               4556667777766 44578999999999999999


Q ss_pred             HHHHHHHH
Q psy1524         303 FKELLVQA  310 (592)
Q Consensus       303 f~~Li~~i  310 (592)
                      |+++++.+
T Consensus       155 ~~~l~~~~  162 (163)
T cd04136         155 FADLVRQI  162 (163)
T ss_pred             HHHHHHhc
Confidence            99998765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>KOG0079|consensus

Probab=99.96  E-value=1.7e-29  Score=230.37  Aligned_cols=167  Identities=29%  Similarity=0.453  Sum_probs=156.7

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .+..+|.+|+|++|||||||+.+|..+.|...|..|++ |+..+++.++|..+.|+||||+|+                 
T Consensus         5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq-----------------   67 (198)
T KOG0079|consen    5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ-----------------   67 (198)
T ss_pred             HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccH-----------------
Confidence            45678999999999999999999999999999999999 999999999999999999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            |+|+.+...|+++.+++++|||+++.+||.++..|++++...
T Consensus        68 --------------------------------------ErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~n  109 (198)
T KOG0079|consen   68 --------------------------------------ERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNN  109 (198)
T ss_pred             --------------------------------------HHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhc
Confidence                                                  999999999999999999999999999999999999999885


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                        ++.+|-|+||||.|+.+.                               +.|..+++..++. ..++.+||+|||.++
T Consensus       110 --cdsv~~vLVGNK~d~~~R-------------------------------rvV~t~dAr~~A~-~mgie~FETSaKe~~  155 (198)
T KOG0079|consen  110 --CDSVPKVLVGNKNDDPER-------------------------------RVVDTEDARAFAL-QMGIELFETSAKENE  155 (198)
T ss_pred             --CccccceecccCCCCccc-------------------------------eeeehHHHHHHHH-hcCchheehhhhhcc
Confidence              568999999999999876                               7888999999987 667889999999999


Q ss_pred             cHHHHHHHHHHHHHHhc
Q psy1524         298 NITQVFKELLVQAKVKY  314 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~~  314 (592)
                      |++.+|.-|.++....+
T Consensus       156 NvE~mF~cit~qvl~~k  172 (198)
T KOG0079|consen  156 NVEAMFHCITKQVLQAK  172 (198)
T ss_pred             cchHHHHHHHHHHHHHH
Confidence            99999999999987765

>cd04122 Rab14 Rab14 subfamily

Probab=99.96  E-value=2.2e-28  Score=231.24  Aligned_cols=162  Identities=26%  Similarity=0.411  Sum_probs=144.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      .+||+++|++|||||||+++|+.+.|...+.+|++ ++....+.+++..+.+.||||+|+                    
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--------------------   61 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ--------------------   61 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCc--------------------
Confidence            48999999999999999999999999988888887 555667788999999999999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         ++|..++..+++++|++|+|||++++.||+.+..|+..+... ..
T Consensus        62 -----------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~  105 (166)
T cd04122          62 -----------------------------------ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL-TN  105 (166)
T ss_pred             -----------------------------------HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CC
Confidence                                               888888999999999999999999999999999999988765 34


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      ++.|+++|+||+|+...                               +.++.+++..+++ .....+++|||++|.||+
T Consensus       106 ~~~~iiiv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~i~  153 (166)
T cd04122         106 PNTVIFLIGNKADLEAQ-------------------------------RDVTYEEAKQFAD-ENGLLFLECSAKTGENVE  153 (166)
T ss_pred             CCCeEEEEEECcccccc-------------------------------cCcCHHHHHHHHH-HcCCEEEEEECCCCCCHH
Confidence            67899999999999765                               5677788888877 456789999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         301 QVFKELLVQAK  311 (592)
Q Consensus       301 eLf~~Li~~i~  311 (592)
                      ++|..+++.+.
T Consensus       154 e~f~~l~~~~~  164 (166)
T cd04122         154 DAFLETAKKIY  164 (166)
T ss_pred             HHHHHHHHHHh
Confidence            99999998874

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04175 Rap1 Rap1 subgroup

Probab=99.96  E-value=1.9e-28  Score=230.67  Aligned_cols=161  Identities=35%  Similarity=0.657  Sum_probs=144.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      +||+|+|++|||||||+++|+.+.+.+.+.+|+.+.+...+.+++..+.++||||+|+                      
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~----------------------   59 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT----------------------   59 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCc----------------------
Confidence            6999999999999999999999999988999999877788889999999999999999                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA  222 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~  222 (592)
                                                       ++|..++..+++++|++|+|||+++..+|+.+..|+..+.......+
T Consensus        60 ---------------------------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~  106 (164)
T cd04175          60 ---------------------------------EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTED  106 (164)
T ss_pred             ---------------------------------ccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence                                             88999999999999999999999999999999999999887655578


Q ss_pred             CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHH
Q psy1524         223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV  302 (592)
Q Consensus       223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeL  302 (592)
                      .|+++|+||+|+...                               +.++.+++..+++ ....+|++|||++|.||+++
T Consensus       107 ~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~  154 (164)
T cd04175         107 VPMILVGNKCDLEDE-------------------------------RVVGKEQGQNLAR-QWGCAFLETSAKAKINVNEI  154 (164)
T ss_pred             CCEEEEEECCcchhc-------------------------------cEEcHHHHHHHHH-HhCCEEEEeeCCCCCCHHHH
Confidence            999999999999765                               4556666677765 45578999999999999999


Q ss_pred             HHHHHHHH
Q psy1524         303 FKELLVQA  310 (592)
Q Consensus       303 f~~Li~~i  310 (592)
                      |.++++.+
T Consensus       155 ~~~l~~~l  162 (164)
T cd04175         155 FYDLVRQI  162 (164)
T ss_pred             HHHHHHHh
Confidence            99999876

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.96  E-value=1.7e-28  Score=235.85  Aligned_cols=173  Identities=25%  Similarity=0.439  Sum_probs=145.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      .+||+|+|++|||||||+++|+.+.|.+.+.||+++.+...+.+++..+.++||||+|+                     
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~---------------------   59 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ---------------------   59 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCc---------------------
Confidence            37999999999999999999999999999999999877777888999999999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHH-HHHHHHHhhcC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-IRDHIFETKAS  220 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~-~l~~L~~~~~~  220 (592)
                                                        ++|..++..+++++|++|+|||+++++||+++.. |+..+...  .
T Consensus        60 ----------------------------------~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~--~  103 (175)
T cd01874          60 ----------------------------------EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--C  103 (175)
T ss_pred             ----------------------------------cchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--C
Confidence                                              7888888889999999999999999999999974 88777664  3


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      +++|+||||||+|+.......        ..+           .....+.++.++++.+++......|+||||++|.||+
T Consensus       104 ~~~piilvgnK~Dl~~~~~~~--------~~l-----------~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~  164 (175)
T cd01874         104 PKTPFLLVGTQIDLRDDPSTI--------EKL-----------AKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLK  164 (175)
T ss_pred             CCCCEEEEEECHhhhhChhhH--------HHh-----------hhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHH
Confidence            579999999999986541100        000           0112367899999999885555789999999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         301 QVFKELLVQA  310 (592)
Q Consensus       301 eLf~~Li~~i  310 (592)
                      ++|+.++..+
T Consensus       165 ~~f~~~~~~~  174 (175)
T cd01874         165 NVFDEAILAA  174 (175)
T ss_pred             HHHHHHHHHh
Confidence            9999998864

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.96  E-value=3.5e-28  Score=238.12  Aligned_cols=169  Identities=24%  Similarity=0.382  Sum_probs=147.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      +||+|+|++|||||||+++|+++.|...+.+|++ ++....+.++ +..+.++||||+|+                    
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~--------------------   60 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ--------------------   60 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCc--------------------
Confidence            5999999999999999999999999988999998 6667777887 88899999999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh--
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK--  218 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~--  218 (592)
                                                         ++|..++..+++++|++|+|||++++.||+.+..|+..+....  
T Consensus        61 -----------------------------------~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~  105 (201)
T cd04107          61 -----------------------------------ERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTL  105 (201)
T ss_pred             -----------------------------------hhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcc
Confidence                                               8888999999999999999999999999999999998887542  


Q ss_pred             -cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         219 -ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       219 -~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                       ...++|+||||||+|+.+.                               +.++.+++..+++......|++|||++|.
T Consensus       106 ~~~~~~piilv~NK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sak~~~  154 (201)
T cd04107         106 PNGEPIPCLLLANKCDLKKR-------------------------------LAKDGEQMDQFCKENGFIGWFETSAKEGI  154 (201)
T ss_pred             cCCCCCcEEEEEECCCcccc-------------------------------cccCHHHHHHHHHHcCCceEEEEeCCCCC
Confidence             2367899999999999754                               56778888888885544689999999999


Q ss_pred             cHHHHHHHHHHHHHHhcccC
Q psy1524         298 NITQVFKELLVQAKVKYNLS  317 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~~~~~  317 (592)
                      ||+++|+++++.+....+..
T Consensus       155 ~v~e~f~~l~~~l~~~~~~~  174 (201)
T cd04107         155 NIEEAMRFLVKNILANDKNL  174 (201)
T ss_pred             CHHHHHHHHHHHHHHhchhh
Confidence            99999999999987654433

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=99.96  E-value=4.8e-28  Score=234.96  Aligned_cols=168  Identities=36%  Similarity=0.580  Sum_probs=148.7

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||+++|+.+.|...+.+|+++.+.+.+.+++..+.++||||+|+                   
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~-------------------   63 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQ-------------------   63 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCC-------------------
Confidence            3468999999999999999999999999988999998777888889999999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          ++|..++..+++.+|++|+|||++++.||+.+..|+..+.+...
T Consensus        64 ------------------------------------~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~  107 (189)
T PTZ00369         64 ------------------------------------EEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD  107 (189)
T ss_pred             ------------------------------------ccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence                                                78889999999999999999999999999999999999887654


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..++|+|+|+||+|+...                               +.++.+++..+++ ....++++|||++|.||
T Consensus       108 ~~~~piiiv~nK~Dl~~~-------------------------------~~i~~~~~~~~~~-~~~~~~~e~Sak~~~gi  155 (189)
T PTZ00369        108 KDRVPMILVGNKCDLDSE-------------------------------RQVSTGEGQELAK-SFGIPFLETSAKQRVNV  155 (189)
T ss_pred             CCCCCEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HhCCEEEEeeCCCCCCH
Confidence            568899999999998654                               5667677777766 44578999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q psy1524         300 TQVFKELLVQAKVKY  314 (592)
Q Consensus       300 eeLf~~Li~~i~~~~  314 (592)
                      +++|+++++.+....
T Consensus       156 ~~~~~~l~~~l~~~~  170 (189)
T PTZ00369        156 DEAFYELVREIRKYL  170 (189)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999886553

>KOG0091|consensus

Probab=99.96  E-value=6.5e-29  Score=230.06  Aligned_cols=170  Identities=25%  Similarity=0.404  Sum_probs=154.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEee-CCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSM-NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~v-dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .+.+++++||++-||||||+..|+.++|.+-..||++ |++.+.+++ +|..++|++|||+|+                 
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagq-----------------   68 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQ-----------------   68 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccch-----------------
Confidence            4678999999999999999999999999998899999 888887776 788999999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            |+|+++...||+++-++++|||++|++||+++..|.++..-.
T Consensus        69 --------------------------------------erfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~  110 (213)
T KOG0091|consen   69 --------------------------------------ERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMA  110 (213)
T ss_pred             --------------------------------------HHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHh
Confidence                                                  999999999999999999999999999999999999998776


Q ss_pred             hcCCC-CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         218 KASTA-VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       218 ~~~~~-~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      ...+. +-+.|||+|+||...                               |+|+.++++.+++ ..++.|+|+||++|
T Consensus       111 ~q~P~k~VFlLVGhKsDL~Sq-------------------------------RqVt~EEaEklAa-~hgM~FVETSak~g  158 (213)
T KOG0091|consen  111 TQGPDKVVFLLVGHKSDLQSQ-------------------------------RQVTAEEAEKLAA-SHGMAFVETSAKNG  158 (213)
T ss_pred             cCCCCeeEEEEeccccchhhh-------------------------------ccccHHHHHHHHH-hcCceEEEecccCC
Confidence            55344 456799999999866                               9999999999998 77888999999999


Q ss_pred             ccHHHHHHHHHHHHHHhccc
Q psy1524         297 TNITQVFKELLVQAKVKYNL  316 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~~~~~~  316 (592)
                      .||+|.|..+.+.+....+.
T Consensus       159 ~NVeEAF~mlaqeIf~~i~q  178 (213)
T KOG0091|consen  159 CNVEEAFDMLAQEIFQAIQQ  178 (213)
T ss_pred             CcHHHHHHHHHHHHHHHHhc
Confidence            99999999999998766544

>KOG0093|consensus

Probab=99.96  E-value=1.2e-28  Score=224.62  Aligned_cols=171  Identities=25%  Similarity=0.433  Sum_probs=157.4

Q ss_pred             CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524          56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG  134 (592)
Q Consensus        56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~  134 (592)
                      .+.-++.+|++|+|++.||||||+-|++++.|...+..|.+ ++..+++.-+.+.+.+++|||+|+              
T Consensus        15 dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagq--------------   80 (193)
T KOG0093|consen   15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQ--------------   80 (193)
T ss_pred             cccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccc--------------
Confidence            34457788999999999999999999999999999999999 888888777888999999999999              


Q ss_pred             CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524         135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI  214 (592)
Q Consensus       135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L  214 (592)
                                                               |+|+.+...|+++|+++|+|||++|.+||..++.|...|
T Consensus        81 -----------------------------------------EryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqI  119 (193)
T KOG0093|consen   81 -----------------------------------------ERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQI  119 (193)
T ss_pred             -----------------------------------------hhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHh
Confidence                                                     999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524         215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK  294 (592)
Q Consensus       215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk  294 (592)
                      ..+ .-.+.|+|+||||||+.+.                               |.++.+.++.++. ..+..|||+|||
T Consensus       120 kty-sw~naqvilvgnKCDmd~e-------------------------------Rvis~e~g~~l~~-~LGfefFEtSaK  166 (193)
T KOG0093|consen  120 KTY-SWDNAQVILVGNKCDMDSE-------------------------------RVISHERGRQLAD-QLGFEFFETSAK  166 (193)
T ss_pred             eee-eccCceEEEEecccCCccc-------------------------------eeeeHHHHHHHHH-HhChHHhhhccc
Confidence            776 5678999999999999887                               8999999999988 667789999999


Q ss_pred             CCccHHHHHHHHHHHHHHhc
Q psy1524         295 DNTNITQVFKELLVQAKVKY  314 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i~~~~  314 (592)
                      .+.||+++|+.++..|.++.
T Consensus       167 ~NinVk~~Fe~lv~~Ic~km  186 (193)
T KOG0093|consen  167 ENINVKQVFERLVDIICDKM  186 (193)
T ss_pred             ccccHHHHHHHHHHHHHHHh
Confidence            99999999999999997654

>cd04176 Rap2 Rap2 subgroup

Probab=99.96  E-value=6.2e-28  Score=226.68  Aligned_cols=162  Identities=36%  Similarity=0.644  Sum_probs=143.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      .+||+++|++|||||||+++++.+.+.+.+.+|+.+.+...+.+++..+.++||||+|+                     
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~---------------------   59 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT---------------------   59 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCc---------------------
Confidence            37999999999999999999999999988889888888888889999999999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        ++|..++..+++++|++|+|||++++.||+++..|+..+.+.....
T Consensus        60 ----------------------------------~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  105 (163)
T cd04176          60 ----------------------------------EQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYE  105 (163)
T ss_pred             ----------------------------------ccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence                                              8888999999999999999999999999999999999998765456


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|+++|+||+|+...                               +.+..+++..+++ ....++++|||++|.||++
T Consensus       106 ~~piviv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~  153 (163)
T cd04176         106 KVPIILVGNKVDLESE-------------------------------REVSSAEGRALAE-EWGCPFMETSAKSKTMVNE  153 (163)
T ss_pred             CCCEEEEEECccchhc-------------------------------CccCHHHHHHHHH-HhCCEEEEecCCCCCCHHH
Confidence            8999999999998654                               4556666777765 3457899999999999999


Q ss_pred             HHHHHHHHH
Q psy1524         302 VFKELLVQA  310 (592)
Q Consensus       302 Lf~~Li~~i  310 (592)
                      +|..+++.+
T Consensus       154 l~~~l~~~l  162 (163)
T cd04176         154 LFAEIVRQM  162 (163)
T ss_pred             HHHHHHHhc
Confidence            999998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.96  E-value=1e-27  Score=227.04  Aligned_cols=164  Identities=33%  Similarity=0.519  Sum_probs=145.3

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      +.+||+|+|++|||||||+++|+++.|.+.+.+|++ +.....+.+++..+.++||||+|+                   
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~-------------------   62 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ-------------------   62 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCch-------------------
Confidence            568999999999999999999999999999899888 566677788898899999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +.+..+...++++||++|+|||++++.||..+..|+..+... .
T Consensus        63 ------------------------------------~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~-~  105 (167)
T cd01867          63 ------------------------------------ERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEH-A  105 (167)
T ss_pred             ------------------------------------HHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHh-C
Confidence                                                778888888999999999999999999999999999988775 3


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..++|+++|+||+|+.+.                               +.+..+++..++. ....++++|||++|.||
T Consensus       106 ~~~~p~iiv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v  153 (167)
T cd01867         106 SEDVERMLVGNKCDMEEK-------------------------------RVVSKEEGEALAD-EYGIKFLETSAKANINV  153 (167)
T ss_pred             CCCCcEEEEEECcccccc-------------------------------cCCCHHHHHHHHH-HcCCEEEEEeCCCCCCH
Confidence            467899999999999865                               5567777777776 45678999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1524         300 TQVFKELLVQAKV  312 (592)
Q Consensus       300 eeLf~~Li~~i~~  312 (592)
                      +++|+++++.+..
T Consensus       154 ~~~~~~i~~~~~~  166 (167)
T cd01867         154 EEAFFTLAKDIKK  166 (167)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998853

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.96  E-value=9.8e-28  Score=239.87  Aligned_cols=178  Identities=21%  Similarity=0.361  Sum_probs=147.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      ++||+|||++|||||||+++|+.+.|.+.|.||+.+.+...+.+++..+.|.||||+|+                     
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~---------------------   59 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGS---------------------   59 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCc---------------------
Confidence            37999999999999999999999999999999999877788889999999999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHH-HHHHHHHhhcC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-IRDHIFETKAS  220 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~-~l~~L~~~~~~  220 (592)
                                                        +.|..++..++.++|++|+|||+++++||+++.. |...+..  ..
T Consensus        60 ----------------------------------e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~--~~  103 (222)
T cd04173          60 ----------------------------------SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQE--FC  103 (222)
T ss_pred             ----------------------------------HHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--hC
Confidence                                              8899999999999999999999999999999954 6555544  35


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc-H
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN-I  299 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g-V  299 (592)
                      ++.|+||||||+||.++....        ..+.           ......++.+++..+++....+.|+||||+++.| |
T Consensus       104 ~~~piiLVgnK~DL~~~~~~~--------~~~~-----------~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V  164 (222)
T cd04173         104 PNAKVVLVGCKLDMRTDLATL--------RELS-----------KQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSV  164 (222)
T ss_pred             CCCCEEEEEECcccccchhhh--------hhhh-----------hccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCH
Confidence            689999999999997541100        0000           0012458889999999866556899999999985 9


Q ss_pred             HHHHHHHHHHHHHhcc
Q psy1524         300 TQVFKELLVQAKVKYN  315 (592)
Q Consensus       300 eeLf~~Li~~i~~~~~  315 (592)
                      +++|..++..+..+..
T Consensus       165 ~~~F~~~~~~~~~~~~  180 (222)
T cd04173         165 RDVFHVATVASLGRGH  180 (222)
T ss_pred             HHHHHHHHHHHHhccC
Confidence            9999999998765443

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04127 Rab27A Rab27a subfamily

Probab=99.96  E-value=9e-28  Score=229.46  Aligned_cols=166  Identities=25%  Similarity=0.449  Sum_probs=144.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeC----------CeEEEEEEEeCCCCCCCCcccc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMN----------GVHLKLDILDTSGEQSGKGLKC  128 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vd----------g~~v~L~I~DT~G~~~~~~~~~  128 (592)
                      .+.+||+++|++|||||||+++|+.+.|...+.+|++ ++....+.++          +..+.++||||+|+        
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--------   73 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ--------   73 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh--------
Confidence            3569999999999999999999999999988888887 5555555543          45788999999999        


Q ss_pred             cccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH
Q psy1524         129 GAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR  208 (592)
Q Consensus       129 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~  208 (592)
                                                                     ++|..++..+++++|++|+|||+++++||.++.
T Consensus        74 -----------------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~  106 (180)
T cd04127          74 -----------------------------------------------ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVR  106 (180)
T ss_pred             -----------------------------------------------HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHH
Confidence                                                           888899999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeE
Q psy1524         209 LIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGF  288 (592)
Q Consensus       209 ~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~  288 (592)
                      .|+..+.......++|+++|+||+|+.+.                               +.++.+++..+++ ..++++
T Consensus       107 ~~~~~i~~~~~~~~~piiiv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~  154 (180)
T cd04127         107 NWMSQLQTHAYCENPDIVLCGNKADLEDQ-------------------------------RQVSEEQAKALAD-KYGIPY  154 (180)
T ss_pred             HHHHHHHHhcCCCCCcEEEEEeCccchhc-------------------------------CccCHHHHHHHHH-HcCCeE
Confidence            99999877644568899999999999765                               5677788888877 456789


Q ss_pred             EEcccCCCccHHHHHHHHHHHHHH
Q psy1524         289 VEASAKDNTNITQVFKELLVQAKV  312 (592)
Q Consensus       289 ~EvSAktg~gVeeLf~~Li~~i~~  312 (592)
                      +++||++|.||+++|+.+++.+.+
T Consensus       155 ~e~Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         155 FETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999988753

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04144 Ras2 Ras2 subfamily

Probab=99.96  E-value=7.9e-28  Score=233.64  Aligned_cols=165  Identities=33%  Similarity=0.552  Sum_probs=144.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV  143 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~  143 (592)
                      ||+|+|++|||||||+++|+.+.|...+.+|+++.+...+.+++..+.++||||+|+                       
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~-----------------------   57 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQ-----------------------   57 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCc-----------------------
Confidence            689999999999999999999999988999998777777888999999999999999                       


Q ss_pred             HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc--CC
Q psy1524         144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA--ST  221 (592)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~--~~  221 (592)
                                                      ++|..++..+++++|++|+|||+++..||+.+..|+..+.....  ..
T Consensus        58 --------------------------------~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~  105 (190)
T cd04144          58 --------------------------------EEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAA  105 (190)
T ss_pred             --------------------------------hhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCC
Confidence                                            88889999999999999999999999999999999998877532  35


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|+|+||||+|+...                               +.++.+++..+++ ..+..|+++||++|.||++
T Consensus       106 ~~piilvgNK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~e~SAk~~~~v~~  153 (190)
T cd04144         106 DVPIMIVGNKCDKVYE-------------------------------REVSTEEGAALAR-RLGCEFIEASAKTNVNVER  153 (190)
T ss_pred             CCCEEEEEEChhcccc-------------------------------CccCHHHHHHHHH-HhCCEEEEecCCCCCCHHH
Confidence            7899999999999755                               5667777777766 3457899999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q psy1524         302 VFKELLVQAKVKYN  315 (592)
Q Consensus       302 Lf~~Li~~i~~~~~  315 (592)
                      +|+.+++.+.....
T Consensus       154 l~~~l~~~l~~~~~  167 (190)
T cd04144         154 AFYTLVRALRQQRQ  167 (190)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999998864433

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.96  E-value=1.2e-27  Score=224.72  Aligned_cols=162  Identities=38%  Similarity=0.661  Sum_probs=144.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      +||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+++|||+|+                      
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~----------------------   58 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQ----------------------   58 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCc----------------------
Confidence            5999999999999999999999999988899998888888888999999999999999                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA  222 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~  222 (592)
                                                       ++|..++..+++++|++++|||++++++|+.+..|+..+.+.....+
T Consensus        59 ---------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  105 (164)
T smart00173       59 ---------------------------------EEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDD  105 (164)
T ss_pred             ---------------------------------ccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence                                             78888999999999999999999999999999999998887655568


Q ss_pred             CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHH
Q psy1524         223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV  302 (592)
Q Consensus       223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeL  302 (592)
                      +|+|+|+||+|+...                               +.++.+++..+++ ....++++|||++|.||+++
T Consensus       106 ~pii~v~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l  153 (164)
T smart00173      106 VPIVLVGNKCDLESE-------------------------------RVVSTEEGKELAR-QWGCPFLETSAKERVNVDEA  153 (164)
T ss_pred             CCEEEEEECcccccc-------------------------------ceEcHHHHHHHHH-HcCCEEEEeecCCCCCHHHH
Confidence            999999999999764                               4556667777776 35588999999999999999


Q ss_pred             HHHHHHHHH
Q psy1524         303 FKELLVQAK  311 (592)
Q Consensus       303 f~~Li~~i~  311 (592)
                      |+.+++.+.
T Consensus       154 ~~~l~~~~~  162 (164)
T smart00173      154 FYDLVREIR  162 (164)
T ss_pred             HHHHHHHHh
Confidence            999998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.96  E-value=1.6e-27  Score=221.79  Aligned_cols=161  Identities=34%  Similarity=0.571  Sum_probs=141.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      .+||+|+|++|||||||+++|+++.|...+.+|+.+.+...+.+++..+.+++|||+|+                     
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------------   59 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ---------------------   59 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCC---------------------
Confidence            37999999999999999999999999988999998877788888998899999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        ++|..++..+++++|++++|||+++..+|+++..|+..+.+.....
T Consensus        60 ----------------------------------~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~  105 (162)
T cd04138          60 ----------------------------------EEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSD  105 (162)
T ss_pred             ----------------------------------cchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence                                              8889999999999999999999999999999999999888765456


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|+++|+||+|+...                                .+..+++..+++ ....+++++||++|.||++
T Consensus       106 ~~piivv~nK~Dl~~~--------------------------------~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~  152 (162)
T cd04138         106 DVPMVLVGNKCDLAAR--------------------------------TVSSRQGQDLAK-SYGIPYIETSAKTRQGVEE  152 (162)
T ss_pred             CCCEEEEEECcccccc--------------------------------eecHHHHHHHHH-HhCCeEEEecCCCCCCHHH
Confidence            8999999999998643                                345566666665 4466899999999999999


Q ss_pred             HHHHHHHHH
Q psy1524         302 VFKELLVQA  310 (592)
Q Consensus       302 Lf~~Li~~i  310 (592)
                      +|+.+++.+
T Consensus       153 l~~~l~~~~  161 (162)
T cd04138         153 AFYTLVREI  161 (162)
T ss_pred             HHHHHHHHh
Confidence            999998764

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04117 Rab15 Rab15 subfamily

Probab=99.96  E-value=1.4e-27  Score=225.45  Aligned_cols=159  Identities=25%  Similarity=0.454  Sum_probs=142.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +||+++|++|||||||+++|+.+.|.+.+.+|++ +.....+.+++..+.++||||+|+                     
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~---------------------   59 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQ---------------------   59 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCc---------------------
Confidence            5899999999999999999999999988889988 566677888998999999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        ++|..+...+++.+|++++|||++++.||+.+..|+..+... ...
T Consensus        60 ----------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~-~~~  104 (161)
T cd04117          60 ----------------------------------ERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEY-APE  104 (161)
T ss_pred             ----------------------------------HhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-CCC
Confidence                                              778888888999999999999999999999999999988765 345


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|+++||||+|+...                               +.++.+++..+++ .+.++|+||||++|.||++
T Consensus       105 ~~~iilvgnK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~e~Sa~~~~~v~~  152 (161)
T cd04117         105 GVQKILIGNKADEEQK-------------------------------RQVGDEQGNKLAK-EYGMDFFETSACTNSNIKE  152 (161)
T ss_pred             CCeEEEEEECcccccc-------------------------------cCCCHHHHHHHHH-HcCCEEEEEeCCCCCCHHH
Confidence            7999999999999765                               6778888998887 4568899999999999999


Q ss_pred             HHHHHHHH
Q psy1524         302 VFKELLVQ  309 (592)
Q Consensus       302 Lf~~Li~~  309 (592)
                      +|++|++.
T Consensus       153 ~f~~l~~~  160 (161)
T cd04117         153 SFTRLTEL  160 (161)
T ss_pred             HHHHHHhh
Confidence            99999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.96  E-value=1e-27  Score=230.23  Aligned_cols=171  Identities=25%  Similarity=0.446  Sum_probs=143.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      +||+|+|++|||||||+.+|+.+.|.+.+.+|+.+.+...+.+++..+.++||||+|+                      
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~----------------------   59 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ----------------------   59 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCc----------------------
Confidence            7999999999999999999999999999999998887778888999999999999999                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhhcCC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETKAST  221 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~~~~  221 (592)
                                                       +.|..++..+++++|++|+|||+++++||+++. .|+..+...  ..
T Consensus        60 ---------------------------------~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~--~~  104 (174)
T cd01871          60 ---------------------------------EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH--CP  104 (174)
T ss_pred             ---------------------------------hhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CC
Confidence                                             788888888999999999999999999999996 577777654  35


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      +.|+||||||+|+.+.....+        .+           .....+.++.+++..+++....+.|+||||++|.||++
T Consensus       105 ~~piilvgnK~Dl~~~~~~~~--------~~-----------~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~  165 (174)
T cd01871         105 NTPIILVGTKLDLRDDKDTIE--------KL-----------KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKT  165 (174)
T ss_pred             CCCEEEEeeChhhccChhhHH--------HH-----------hhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHH
Confidence            799999999999965311000        00           00122678899999999865556899999999999999


Q ss_pred             HHHHHHHH
Q psy1524         302 VFKELLVQ  309 (592)
Q Consensus       302 Lf~~Li~~  309 (592)
                      +|+.+++.
T Consensus       166 ~f~~l~~~  173 (174)
T cd01871         166 VFDEAIRA  173 (174)
T ss_pred             HHHHHHHh
Confidence            99999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.95  E-value=2.8e-27  Score=221.58  Aligned_cols=162  Identities=33%  Similarity=0.601  Sum_probs=143.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      .+||+++|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+++|||+|+                     
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------------   60 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQ---------------------   60 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCC---------------------
Confidence            47999999999999999999999999888889988777777888998899999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        +++..++..+++++|++++|||+++..+|+.+..|+..+.......
T Consensus        61 ----------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~  106 (164)
T cd04145          61 ----------------------------------EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRD  106 (164)
T ss_pred             ----------------------------------cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC
Confidence                                              7888899999999999999999999999999999999988765556


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|+|+|+||+|+...                               +.++.+++..+++ ....+++++||++|.||++
T Consensus       107 ~~piiiv~NK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~  154 (164)
T cd04145         107 EFPMILVGNKADLEHQ-------------------------------RKVSREEGQELAR-KLKIPYIETSAKDRLNVDK  154 (164)
T ss_pred             CCCEEEEeeCcccccc-------------------------------ceecHHHHHHHHH-HcCCcEEEeeCCCCCCHHH
Confidence            8999999999999755                               4566667777776 3456899999999999999


Q ss_pred             HHHHHHHHH
Q psy1524         302 VFKELLVQA  310 (592)
Q Consensus       302 Lf~~Li~~i  310 (592)
                      +|+.+++.+
T Consensus       155 l~~~l~~~~  163 (164)
T cd04145         155 AFHDLVRVI  163 (164)
T ss_pred             HHHHHHHhh
Confidence            999998765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.95  E-value=2.3e-27  Score=222.04  Aligned_cols=162  Identities=26%  Similarity=0.391  Sum_probs=142.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +||+|+|++|||||||+++|+++.+...+.+|++ ++..+.+.+++..+.++||||+|+                     
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~---------------------   59 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH---------------------   59 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCcc---------------------
Confidence            5999999999999999999999999988999988 566777888899999999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC-
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS-  220 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~-  220 (592)
                                                        +.+..++..+++++|++|+|||++++.+|+.+..|+..+...... 
T Consensus        60 ----------------------------------~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~  105 (168)
T cd04119          60 ----------------------------------PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPH  105 (168)
T ss_pred             ----------------------------------HHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccc
Confidence                                              778888899999999999999999999999999999999876432 


Q ss_pred             ---CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         221 ---TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       221 ---~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                         .+.|+++|+||+|+...                               +.++.+++..++. ....+++++||++|.
T Consensus       106 ~~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  153 (168)
T cd04119         106 GNMENIVVVVCANKIDLTKH-------------------------------RAVSEDEGRLWAE-SKGFKYFETSACTGE  153 (168)
T ss_pred             ccCCCceEEEEEEchhcccc-------------------------------cccCHHHHHHHHH-HcCCeEEEEECCCCC
Confidence               57899999999999754                               4566777777766 445789999999999


Q ss_pred             cHHHHHHHHHHHHH
Q psy1524         298 NITQVFKELLVQAK  311 (592)
Q Consensus       298 gVeeLf~~Li~~i~  311 (592)
                      ||+++|+.+++.+.
T Consensus       154 gi~~l~~~l~~~l~  167 (168)
T cd04119         154 GVNEMFQTLFSSIV  167 (168)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998874

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01865 Rab3 Rab3 subfamily

Probab=99.95  E-value=3.2e-27  Score=223.30  Aligned_cols=162  Identities=28%  Similarity=0.464  Sum_probs=141.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +||+|+|++|||||||+++|+++.|...+.+|++ ++....+..++..+.+++|||+|+                     
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~---------------------   60 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQ---------------------   60 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh---------------------
Confidence            7999999999999999999999999888888887 555666777888899999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        +++..++..+++++|++++|||++++.+|+.+..|+..+... ...
T Consensus        61 ----------------------------------~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~-~~~  105 (165)
T cd01865          61 ----------------------------------ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY-SWD  105 (165)
T ss_pred             ----------------------------------HHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-CCC
Confidence                                              778888889999999999999999999999999999988765 345


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      +.|+++|+||+|+.+.                               +.+..+++..+++ ..+.+++++||++|.||++
T Consensus       106 ~~piivv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~  153 (165)
T cd01865         106 NAQVILVGNKCDMEDE-------------------------------RVVSSERGRQLAD-QLGFEFFEASAKENINVKQ  153 (165)
T ss_pred             CCCEEEEEECcccCcc-------------------------------cccCHHHHHHHHH-HcCCEEEEEECCCCCCHHH
Confidence            7899999999999765                               4566677777766 4566899999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         302 VFKELLVQAKV  312 (592)
Q Consensus       302 Lf~~Li~~i~~  312 (592)
                      +|+.+++.+..
T Consensus       154 l~~~l~~~~~~  164 (165)
T cd01865         154 VFERLVDIICD  164 (165)
T ss_pred             HHHHHHHHHHh
Confidence            99999987743

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.95  E-value=4.4e-27  Score=221.84  Aligned_cols=162  Identities=31%  Similarity=0.516  Sum_probs=143.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      .+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+++|||+|+                    
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~--------------------   61 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ--------------------   61 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc--------------------
Confidence            58999999999999999999999999888888877 666777888998899999999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         ++|..++..+++.+|++|+|||+++++||.++..|+..+... ..
T Consensus        62 -----------------------------------~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~-~~  105 (166)
T cd01869          62 -----------------------------------ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRY-AS  105 (166)
T ss_pred             -----------------------------------HhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHh-CC
Confidence                                               788888889999999999999999999999999999988775 34


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      .+.|+|+|+||+|+...                               +.+..+++..+++ ....+++++||++|.||+
T Consensus       106 ~~~~~iiv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~  153 (166)
T cd01869         106 ENVNKLLVGNKCDLTDK-------------------------------RVVDYSEAQEFAD-ELGIPFLETSAKNATNVE  153 (166)
T ss_pred             CCCcEEEEEEChhcccc-------------------------------cCCCHHHHHHHHH-HcCCeEEEEECCCCcCHH
Confidence            57899999999998765                               5567778888876 557789999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         301 QVFKELLVQAK  311 (592)
Q Consensus       301 eLf~~Li~~i~  311 (592)
                      ++|+.+++.+.
T Consensus       154 ~~~~~i~~~~~  164 (166)
T cd01869         154 QAFMTMAREIK  164 (166)
T ss_pred             HHHHHHHHHHH
Confidence            99999998874

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=3.5e-27  Score=221.02  Aligned_cols=160  Identities=34%  Similarity=0.611  Sum_probs=147.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      ||+|+|+.+||||||+++|.++.|.+.+.+|++ +.....+.+++..+.++|||++|+                      
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~----------------------   58 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQ----------------------   58 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTS----------------------
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccc----------------------
Confidence            899999999999999999999999999999995 888899999999999999999999                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA  222 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~  222 (592)
                                                       ++|..+...+++++|++|+|||+++++||+.+..|+..+.... ..+
T Consensus        59 ---------------------------------~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~-~~~  104 (162)
T PF00071_consen   59 ---------------------------------ERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYK-PED  104 (162)
T ss_dssp             ---------------------------------GGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHS-TTT
T ss_pred             ---------------------------------ccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence                                             8888899999999999999999999999999999999998873 356


Q ss_pred             CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHH
Q psy1524         223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV  302 (592)
Q Consensus       223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeL  302 (592)
                      +|++|||||+|+.+.                               +.++.++++.+++. .+.+|+||||+++.||.++
T Consensus       105 ~~iivvg~K~D~~~~-------------------------------~~v~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~~  152 (162)
T PF00071_consen  105 IPIIVVGNKSDLSDE-------------------------------REVSVEEAQEFAKE-LGVPYFEVSAKNGENVKEI  152 (162)
T ss_dssp             SEEEEEEETTTGGGG-------------------------------SSSCHHHHHHHHHH-TTSEEEEEBTTTTTTHHHH
T ss_pred             ccceeeecccccccc-------------------------------ccchhhHHHHHHHH-hCCEEEEEECCCCCCHHHH
Confidence            899999999999875                               78899999999984 4599999999999999999


Q ss_pred             HHHHHHHHH
Q psy1524         303 FKELLVQAK  311 (592)
Q Consensus       303 f~~Li~~i~  311 (592)
                      |..+++.+.
T Consensus       153 f~~~i~~i~  161 (162)
T PF00071_consen  153 FQELIRKIL  161 (162)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999874

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04134 Rho3 Rho3 subfamily

Probab=99.95  E-value=2.2e-27  Score=230.43  Aligned_cols=173  Identities=29%  Similarity=0.447  Sum_probs=143.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV  143 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~  143 (592)
                      ||+|+|++|||||||+++|..+.|...+.+|+.+.+...+.+++..+.++||||+|+                       
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~-----------------------   58 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQ-----------------------   58 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCC-----------------------
Confidence            899999999999999999999999988999998777777788898999999999999                       


Q ss_pred             HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhhcCCC
Q psy1524         144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETKASTA  222 (592)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~~~~~  222 (592)
                                                      +.|..++..++..+|++|+|||++++.||+.+. .|+..+...  ..+
T Consensus        59 --------------------------------~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~--~~~  104 (189)
T cd04134          59 --------------------------------EEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREH--CPG  104 (189)
T ss_pred             --------------------------------hhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCC
Confidence                                            777778888899999999999999999999997 488887764  358


Q ss_pred             CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHH
Q psy1524         223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV  302 (592)
Q Consensus       223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeL  302 (592)
                      .|+||||||+||........        .+           .....+.++.+++..+++....+.|+||||++|.||+++
T Consensus       105 ~piilvgNK~Dl~~~~~~~~--------~~-----------~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~  165 (189)
T cd04134         105 VKLVLVALKCDLREARNERD--------DL-----------QRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEA  165 (189)
T ss_pred             CCEEEEEEChhhccChhhHH--------HH-----------hhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHH
Confidence            99999999999976421000        00           000113567788888887555578999999999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         303 FKELLVQAKV  312 (592)
Q Consensus       303 f~~Li~~i~~  312 (592)
                      |+++++.+..
T Consensus       166 f~~l~~~~~~  175 (189)
T cd04134         166 FTEAARVALN  175 (189)
T ss_pred             HHHHHHHHhc
Confidence            9999998853

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04128 Spg1 Spg1p

Probab=99.95  E-value=3.2e-27  Score=228.70  Aligned_cols=167  Identities=20%  Similarity=0.367  Sum_probs=140.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +||+++|++|||||||+++|+.+.|.+.+.+|++ ++..+.+.+++..+.++||||+|+                     
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~---------------------   59 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQ---------------------   59 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc---------------------
Confidence            5899999999999999999999999999999998 666778889999999999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        ++|..++..++++||++++|||++++.||+++..|+..+... ...
T Consensus        60 ----------------------------------~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~-~~~  104 (182)
T cd04128          60 ----------------------------------REFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGF-NKT  104 (182)
T ss_pred             ----------------------------------hhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCC
Confidence                                              788889999999999999999999999999999999988775 234


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ..| |+||||+|+.....                          ...+....+++..+++ ..+..+++|||++|.||++
T Consensus       105 ~~p-ilVgnK~Dl~~~~~--------------------------~~~~~~~~~~~~~~a~-~~~~~~~e~SAk~g~~v~~  156 (182)
T cd04128         105 AIP-ILVGTKYDLFADLP--------------------------PEEQEEITKQARKYAK-AMKAPLIFCSTSHSINVQK  156 (182)
T ss_pred             CCE-EEEEEchhcccccc--------------------------chhhhhhHHHHHHHHH-HcCCEEEEEeCCCCCCHHH
Confidence            566 68899999964200                          0001122456777776 4457899999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy1524         302 VFKELLVQAKVK  313 (592)
Q Consensus       302 Lf~~Li~~i~~~  313 (592)
                      +|+++++.+...
T Consensus       157 lf~~l~~~l~~~  168 (182)
T cd04128         157 IFKIVLAKAFDL  168 (182)
T ss_pred             HHHHHHHHHHhc
Confidence            999999988653

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04140 ARHI_like ARHI subfamily

Probab=99.95  E-value=5.4e-27  Score=221.73  Aligned_cols=160  Identities=40%  Similarity=0.630  Sum_probs=139.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      +||+++|++|||||||+++|+++.|...+.+|+...+...+..++..+.+++|||+|+                      
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~----------------------   59 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGS----------------------   59 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCC----------------------
Confidence            7999999999999999999999999888889888777777777888899999999999                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc--C
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA--S  220 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~--~  220 (592)
                                                       ++|..+...++..+|++|+|||++++.||+.+..|+..+.+...  .
T Consensus        60 ---------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~  106 (165)
T cd04140          60 ---------------------------------HQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNI  106 (165)
T ss_pred             ---------------------------------CcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCC
Confidence                                             77888888899999999999999999999999999988876532  2


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      .++|+++|+||+|+...                               +.+..+++..++. ...+.|+||||++|.||+
T Consensus       107 ~~~piilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~e~SA~~g~~v~  154 (165)
T cd04140         107 EKIPIMLVGNKCDESHK-------------------------------REVSSNEGAACAT-EWNCAFMETSAKTNHNVQ  154 (165)
T ss_pred             CCCCEEEEEECcccccc-------------------------------CeecHHHHHHHHH-HhCCcEEEeecCCCCCHH
Confidence            57899999999999754                               4566677777765 456789999999999999


Q ss_pred             HHHHHHHHH
Q psy1524         301 QVFKELLVQ  309 (592)
Q Consensus       301 eLf~~Li~~  309 (592)
                      ++|++|++.
T Consensus       155 ~~f~~l~~~  163 (165)
T cd04140         155 ELFQELLNL  163 (165)
T ss_pred             HHHHHHHhc
Confidence            999999753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04109 Rab28 Rab28 subfamily

Probab=99.95  E-value=4.7e-27  Score=233.00  Aligned_cols=163  Identities=28%  Similarity=0.387  Sum_probs=144.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCC-eEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNG-VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg-~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      +||+|+|++|||||||+++|+++.|...+.+|++ +++.+.+.+++ ..+.++||||+|+                    
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~--------------------   60 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ--------------------   60 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc--------------------
Confidence            5899999999999999999999999999999998 78788888864 5789999999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc-
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA-  219 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~-  219 (592)
                                                         +.+..+...++++||++|+|||+++++||+++..|+..+.+... 
T Consensus        61 -----------------------------------~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~  105 (215)
T cd04109          61 -----------------------------------SIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKS  105 (215)
T ss_pred             -----------------------------------HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccc
Confidence                                               77888999999999999999999999999999999999987642 


Q ss_pred             -CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         220 -STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       220 -~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                       ..++|+|+|+||+|+.+.                               +.++.+++..+++ ..+..+++|||++|.|
T Consensus       106 ~~~~~piilVgNK~DL~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~iSAktg~g  153 (215)
T cd04109         106 SETQPLVVLVGNKTDLEHN-------------------------------RTVKDDKHARFAQ-ANGMESCLVSAKTGDR  153 (215)
T ss_pred             cCCCceEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCCEEEEEECCCCCC
Confidence             245789999999999755                               6778888888887 4567899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQAKV  312 (592)
Q Consensus       299 VeeLf~~Li~~i~~  312 (592)
                      |+++|+.+++.+..
T Consensus       154 v~~lf~~l~~~l~~  167 (215)
T cd04109         154 VNLLFQQLAAELLG  167 (215)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998864

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>KOG0095|consensus

Probab=99.95  E-value=1.3e-27  Score=218.28  Aligned_cols=169  Identities=32%  Similarity=0.461  Sum_probs=154.6

Q ss_pred             CCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524          57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP  135 (592)
Q Consensus        57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~  135 (592)
                      +.+...+||++||..|||||+|+.||+.+-|++....|++ |+..+++.++|.+++++||||+|+               
T Consensus         2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagq---------------   66 (213)
T KOG0095|consen    2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQ---------------   66 (213)
T ss_pred             cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccch---------------
Confidence            4567789999999999999999999999999999999999 999999999999999999999999               


Q ss_pred             CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524         136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF  215 (592)
Q Consensus       136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~  215 (592)
                                                              |+|+++...||+.|+++|+|||++-..||+-+..|+.+|.
T Consensus        67 ----------------------------------------erfrsitqsyyrsahalilvydiscqpsfdclpewlreie  106 (213)
T KOG0095|consen   67 ----------------------------------------ERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIE  106 (213)
T ss_pred             ----------------------------------------HHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHH
Confidence                                                    9999999999999999999999999999999999999998


Q ss_pred             HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524         216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD  295 (592)
Q Consensus       216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt  295 (592)
                      .+ ...++--|+||||+|+.+.                               |.|+...++.+.+. ...-|+|+||+.
T Consensus       107 ~y-an~kvlkilvgnk~d~~dr-------------------------------revp~qigeefs~~-qdmyfletsake  153 (213)
T KOG0095|consen  107 QY-ANNKVLKILVGNKIDLADR-------------------------------REVPQQIGEEFSEA-QDMYFLETSAKE  153 (213)
T ss_pred             HH-hhcceEEEeeccccchhhh-------------------------------hhhhHHHHHHHHHh-hhhhhhhhcccc
Confidence            87 5667888999999999877                               78888888888774 455589999999


Q ss_pred             CccHHHHHHHHHHHHHHh
Q psy1524         296 NTNITQVFKELLVQAKVK  313 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~~~  313 (592)
                      ..||+.||..+...+...
T Consensus       154 a~nve~lf~~~a~rli~~  171 (213)
T KOG0095|consen  154 ADNVEKLFLDLACRLISE  171 (213)
T ss_pred             hhhHHHHHHHHHHHHHHH
Confidence            999999999998877544

>KOG0395|consensus

Probab=99.95  E-value=2.3e-27  Score=232.87  Aligned_cols=169  Identities=40%  Similarity=0.662  Sum_probs=158.5

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ..+||+++|.+|||||+|+.+|+.+.|.+.|.||++|.+.+.+.+++..+.+.|+||+|+                    
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~--------------------   61 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQ--------------------   61 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCc--------------------
Confidence            358999999999999999999999999999999999999999999999999999999998                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         ++|..|...++.++|++++||+++|+.||+.+..++..|.+....
T Consensus        62 -----------------------------------~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~  106 (196)
T KOG0395|consen   62 -----------------------------------EEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR  106 (196)
T ss_pred             -----------------------------------ccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc
Confidence                                               889999999999999999999999999999999999999887777


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      .++|+|+||||+|+...                               |.|+.++++.++. .+.++|+|+||+.+.||+
T Consensus       107 ~~~PivlVGNK~Dl~~~-------------------------------R~V~~eeg~~la~-~~~~~f~E~Sak~~~~v~  154 (196)
T KOG0395|consen  107 DDVPIILVGNKCDLERE-------------------------------RQVSEEEGKALAR-SWGCAFIETSAKLNYNVD  154 (196)
T ss_pred             CCCCEEEEEEcccchhc-------------------------------cccCHHHHHHHHH-hcCCcEEEeeccCCcCHH
Confidence            78999999999999876                               8999999999977 788889999999999999


Q ss_pred             HHHHHHHHHHHHhccc
Q psy1524         301 QVFKELLVQAKVKYNL  316 (592)
Q Consensus       301 eLf~~Li~~i~~~~~~  316 (592)
                      ++|..+++.+...+..
T Consensus       155 ~~F~~L~r~~~~~~~~  170 (196)
T KOG0395|consen  155 EVFYELVREIRLPREG  170 (196)
T ss_pred             HHHHHHHHHHHhhhcc
Confidence            9999999999764443

>cd01864 Rab19 Rab19 subfamily

Probab=99.95  E-value=6.6e-27  Score=220.64  Aligned_cols=162  Identities=25%  Similarity=0.465  Sum_probs=142.4

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      +.+||+|+|++|||||||+++|..+.+...+.+|.+ +.....+.+++..+.++||||+|+                   
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~-------------------   62 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ-------------------   62 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCCh-------------------
Confidence            568999999999999999999999999888878876 666777888998889999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +.|..+...+++.+|++++|||++++.||+.+..|+..+... .
T Consensus        63 ------------------------------------~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~-~  105 (165)
T cd01864          63 ------------------------------------ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKY-G  105 (165)
T ss_pred             ------------------------------------HHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHh-C
Confidence                                                778888889999999999999999999999999999998765 3


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..++|+|+|+||+|+...                               +.+..+++..+++......++++||++|.|+
T Consensus       106 ~~~~p~ivv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  154 (165)
T cd01864         106 ASNVVLLLIGNKCDLEEQ-------------------------------REVLFEEACTLAEKNGMLAVLETSAKESQNV  154 (165)
T ss_pred             CCCCcEEEEEECcccccc-------------------------------cccCHHHHHHHHHHcCCcEEEEEECCCCCCH
Confidence            568999999999999765                               5567778888887555567999999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         300 TQVFKELLVQ  309 (592)
Q Consensus       300 eeLf~~Li~~  309 (592)
                      +++|+.+++.
T Consensus       155 ~~~~~~l~~~  164 (165)
T cd01864         155 EEAFLLMATE  164 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999999875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.95  E-value=7.1e-27  Score=223.35  Aligned_cols=164  Identities=26%  Similarity=0.437  Sum_probs=140.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      ||+++|++|||||||+++|+.+.|.+.|.+|++ ++..+.+.+++..+.++||||+|+                      
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------------------   59 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQ----------------------   59 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCh----------------------
Confidence            899999999999999999999999999999998 566677888999999999999999                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA  222 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~  222 (592)
                                                       ++|..++..+++++|++|+|||++++.+|+.+..|+..+.+.....+
T Consensus        60 ---------------------------------~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~  106 (170)
T cd04108          60 ---------------------------------ERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSS  106 (170)
T ss_pred             ---------------------------------HHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC
Confidence                                             88889999999999999999999999999999999998876544456


Q ss_pred             CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHH
Q psy1524         223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV  302 (592)
Q Consensus       223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeL  302 (592)
                      .|+++|+||+|+.+...                             ..+..+++..+++ ....+|+++||++|.||+++
T Consensus       107 ~~iilVgnK~Dl~~~~~-----------------------------~~~~~~~~~~~~~-~~~~~~~e~Sa~~g~~v~~l  156 (170)
T cd04108         107 VLLFLVGTKKDLSSPAQ-----------------------------YALMEQDAIKLAA-EMQAEYWSVSALSGENVREF  156 (170)
T ss_pred             CeEEEEEEChhcCcccc-----------------------------ccccHHHHHHHHH-HcCCeEEEEECCCCCCHHHH
Confidence            78999999999865410                             2234556666665 34568999999999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         303 FKELLVQAKV  312 (592)
Q Consensus       303 f~~Li~~i~~  312 (592)
                      |+.+++.+.+
T Consensus       157 f~~l~~~~~~  166 (170)
T cd04108         157 FFRVAALTFE  166 (170)
T ss_pred             HHHHHHHHHH
Confidence            9999988743

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.95  E-value=4.2e-27  Score=222.75  Aligned_cols=157  Identities=20%  Similarity=0.356  Sum_probs=132.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      +||+|+|++|||||||+.+|+.+.|.+.+.++. ..+...+.+++..+.+.||||+|+                      
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~----------------------   57 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRFKKEVLVDGQSHLLLIRDEGGA----------------------   57 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cceEEEEEECCEEEEEEEEECCCC----------------------
Confidence            589999999999999999999999987766554 344577889999999999999998                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA  222 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~  222 (592)
                                                       +.     ..+++.+|++++|||++|+.||+++..|+..+.......+
T Consensus        58 ---------------------------------~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~   99 (158)
T cd04103          58 ---------------------------------PD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISE   99 (158)
T ss_pred             ---------------------------------Cc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence                                             32     1356789999999999999999999999999987644467


Q ss_pred             CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHH
Q psy1524         223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV  302 (592)
Q Consensus       223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeL  302 (592)
                      +|+++||||+|+....                             .+.++.++++++++....+.|+||||++|.||+++
T Consensus       100 ~piilvgnK~Dl~~~~-----------------------------~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~  150 (158)
T cd04103         100 IPLILVGTQDAISESN-----------------------------PRVIDDARARQLCADMKRCSYYETCATYGLNVERV  150 (158)
T ss_pred             CCEEEEeeHHHhhhcC-----------------------------CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHH
Confidence            8999999999985321                             16788888988987555688999999999999999


Q ss_pred             HHHHHHH
Q psy1524         303 FKELLVQ  309 (592)
Q Consensus       303 f~~Li~~  309 (592)
                      |+.+++.
T Consensus       151 f~~~~~~  157 (158)
T cd04103         151 FQEAAQK  157 (158)
T ss_pred             HHHHHhh
Confidence            9999864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.95  E-value=6.1e-27  Score=237.79  Aligned_cols=163  Identities=44%  Similarity=0.717  Sum_probs=144.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      +||+|+|++|||||||+++|+.+.|...+.+|+.+++.+.+.+++..+.++||||+|+                      
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~----------------------   58 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGN----------------------   58 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCC----------------------
Confidence            5899999999999999999999999988999999888888899999999999999999                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh----
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK----  218 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~----  218 (592)
                                                       +.|..++..++..+|++|+|||+++++||+++..|+.++.+..    
T Consensus        59 ---------------------------------~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~  105 (247)
T cd04143          59 ---------------------------------HPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLK  105 (247)
T ss_pred             ---------------------------------hhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccc
Confidence                                             7788888889999999999999999999999999999987642    


Q ss_pred             ----cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524         219 ----ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK  294 (592)
Q Consensus       219 ----~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk  294 (592)
                          ...++|+|||+||+|+...                               +.++.+++..++.....+.+++|||+
T Consensus       106 ~~~~~~~~~piIivgNK~Dl~~~-------------------------------~~v~~~ei~~~~~~~~~~~~~evSAk  154 (247)
T cd04143         106 NKTKENVKIPMVICGNKADRDFP-------------------------------REVQRDEVEQLVGGDENCAYFEVSAK  154 (247)
T ss_pred             cccccCCCCcEEEEEECccchhc-------------------------------cccCHHHHHHHHHhcCCCEEEEEeCC
Confidence                2357899999999999754                               55677777777664456789999999


Q ss_pred             CCccHHHHHHHHHHHHH
Q psy1524         295 DNTNITQVFKELLVQAK  311 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i~  311 (592)
                      +|.||+++|+.|+..+.
T Consensus       155 tg~gI~elf~~L~~~~~  171 (247)
T cd04143         155 KNSNLDEMFRALFSLAK  171 (247)
T ss_pred             CCCCHHHHHHHHHHHhc
Confidence            99999999999998763

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04111 Rab39 Rab39 subfamily

Probab=99.95  E-value=9.9e-27  Score=230.52  Aligned_cols=165  Identities=24%  Similarity=0.433  Sum_probs=145.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEee-CCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSM-NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~v-dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      .+||+|+|++|||||||+++|+++.+...+.+|++ +++.+.+.+ ++..+.++||||+|+                   
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~-------------------   62 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ-------------------   62 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcc-------------------
Confidence            58999999999999999999999999888888887 677777776 577889999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +.|..+...+++++|++|+|||++++.||+++..|+..+.+...
T Consensus        63 ------------------------------------~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~  106 (211)
T cd04111          63 ------------------------------------ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQ  106 (211)
T ss_pred             ------------------------------------hhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence                                                78888888999999999999999999999999999999877644


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ...+|+|||+||+|+...                               +.++.+++..+++ ..++.|++|||++|.||
T Consensus       107 ~~~~~iilvgNK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~e~Sak~g~~v  154 (211)
T cd04111         107 PHRPVFILVGHKCDLESQ-------------------------------RQVTREEAEKLAK-DLGMKYIETSARTGDNV  154 (211)
T ss_pred             CCCCeEEEEEEccccccc-------------------------------cccCHHHHHHHHH-HhCCEEEEEeCCCCCCH
Confidence            456789999999999765                               5678888888887 45588999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy1524         300 TQVFKELLVQAKVK  313 (592)
Q Consensus       300 eeLf~~Li~~i~~~  313 (592)
                      +++|+.|++.+...
T Consensus       155 ~e~f~~l~~~~~~~  168 (211)
T cd04111         155 EEAFELLTQEIYER  168 (211)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988655

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01868 Rab11_like Rab11-like

Probab=99.95  E-value=1.4e-26  Score=217.97  Aligned_cols=162  Identities=31%  Similarity=0.506  Sum_probs=142.7

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      +.+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.+++|||+|+                   
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~-------------------   62 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQ-------------------   62 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCh-------------------
Confidence            468999999999999999999999999877888887 666778888898899999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +++..+...+++.++++|+|||++++.+|.++..|+..+.+. .
T Consensus        63 ------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~  105 (165)
T cd01868          63 ------------------------------------ERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDH-A  105 (165)
T ss_pred             ------------------------------------HHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-C
Confidence                                                788888899999999999999999999999999999998776 3


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..++|+++|+||+|+...                               +.+..++...++. ...+.+++|||++|.||
T Consensus       106 ~~~~pi~vv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v  153 (165)
T cd01868         106 DSNIVIMLVGNKSDLRHL-------------------------------RAVPTEEAKAFAE-KNGLSFIETSALDGTNV  153 (165)
T ss_pred             CCCCeEEEEEECcccccc-------------------------------ccCCHHHHHHHHH-HcCCEEEEEECCCCCCH
Confidence            346899999999998765                               5667777787776 45678999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         300 TQVFKELLVQA  310 (592)
Q Consensus       300 eeLf~~Li~~i  310 (592)
                      +++|+.++..+
T Consensus       154 ~~l~~~l~~~i  164 (165)
T cd01868         154 EEAFKQLLTEI  164 (165)
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04116 Rab9 Rab9 subfamily

Probab=99.95  E-value=1.3e-26  Score=219.36  Aligned_cols=163  Identities=30%  Similarity=0.535  Sum_probs=142.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      +..+||+++|++|||||||+++|+.+.+.+.+.++++ +.....+.+++..+.++||||+|+                  
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~------------------   64 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ------------------   64 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCCh------------------
Confidence            4669999999999999999999999999888888887 566677888999999999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           +++..++..+++.+|++|+|||++++.||+.+..|+..+....
T Consensus        65 -------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  107 (170)
T cd04116          65 -------------------------------------ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYA  107 (170)
T ss_pred             -------------------------------------HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhc
Confidence                                                 8888999999999999999999999999999999998887653


Q ss_pred             c---CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524         219 A---STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD  295 (592)
Q Consensus       219 ~---~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt  295 (592)
                      .   ..++|+++|+||+|+. .                               +.++.+++..+++......++++||++
T Consensus       108 ~~~~~~~~piilv~nK~Dl~-~-------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~  155 (170)
T cd04116         108 DVKEPESFPFVVLGNKNDIP-E-------------------------------RQVSTEEAQAWCRENGDYPYFETSAKD  155 (170)
T ss_pred             ccccCCCCcEEEEEECcccc-c-------------------------------cccCHHHHHHHHHHCCCCeEEEEECCC
Confidence            2   2568999999999986 2                               466778888888755456799999999


Q ss_pred             CccHHHHHHHHHHH
Q psy1524         296 NTNITQVFKELLVQ  309 (592)
Q Consensus       296 g~gVeeLf~~Li~~  309 (592)
                      |.||+++|+.+++.
T Consensus       156 ~~~v~~~~~~~~~~  169 (170)
T cd04116         156 ATNVAAAFEEAVRR  169 (170)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04142 RRP22 RRP22 subfamily

Probab=99.95  E-value=1.1e-26  Score=228.21  Aligned_cols=174  Identities=36%  Similarity=0.559  Sum_probs=140.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +||+|+|++|||||||+++|+++.|...+.+|+. +.+...+.+++..+.++||||+|.....                 
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~-----------------   63 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP-----------------   63 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCC-----------------
Confidence            5899999999999999999999999988889987 5566677789999999999999982100                 


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh--c
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK--A  219 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~--~  219 (592)
                                                   .++. +++......+++.+|++|+|||++++.||+.+..|+..+.+..  .
T Consensus        64 -----------------------------~~~~-~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~  113 (198)
T cd04142          64 -----------------------------GTAG-QEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAG  113 (198)
T ss_pred             -----------------------------ccch-hHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccC
Confidence                                         0011 2233334456789999999999999999999999999887763  2


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..++|+|+|+||+|+...                               +.++.+++..+++..+.++|++|||++|.||
T Consensus       114 ~~~~piiivgNK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v  162 (198)
T cd04142         114 NKEPPIVVVGNKRDQQRH-------------------------------RFAPRHVLSVLVRKSWKCGYLECSAKYNWHI  162 (198)
T ss_pred             CCCCCEEEEEECcccccc-------------------------------ccccHHHHHHHHHHhcCCcEEEecCCCCCCH
Confidence            467999999999999754                               4566666777765566789999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q psy1524         300 TQVFKELLVQAKVKY  314 (592)
Q Consensus       300 eeLf~~Li~~i~~~~  314 (592)
                      +++|+.+++.+....
T Consensus       163 ~~lf~~i~~~~~~~~  177 (198)
T cd04142         163 LLLFKELLISATTRG  177 (198)
T ss_pred             HHHHHHHHHHhhccC
Confidence            999999999886543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04110 Rab35 Rab35 subfamily

Probab=99.95  E-value=2.3e-26  Score=225.31  Aligned_cols=167  Identities=28%  Similarity=0.421  Sum_probs=146.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ++.+||+|+|++|||||||+++|.++.|...+.+|++ ++....+.+++..+.+.||||+|+                  
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~------------------   65 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQ------------------   65 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCc------------------
Confidence            4579999999999999999999999999888888887 666777888888899999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           +.|..++..+++++|++|+|||+++++||+.+..|+..+... 
T Consensus        66 -------------------------------------~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~-  107 (199)
T cd04110          66 -------------------------------------ERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQN-  107 (199)
T ss_pred             -------------------------------------hhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-
Confidence                                                 788889999999999999999999999999999999988764 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                       ....|++|||||+|+...                               +.++.+++..+++ ..+..+++|||++|.|
T Consensus       108 -~~~~piivVgNK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~g  154 (199)
T cd04110         108 -CDDVCKVLVGNKNDDPER-------------------------------KVVETEDAYKFAG-QMGISLFETSAKENIN  154 (199)
T ss_pred             -CCCCCEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCCEEEEEECCCCcC
Confidence             467899999999998754                               4566777777776 3457899999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q psy1524         299 ITQVFKELLVQAKVKYN  315 (592)
Q Consensus       299 VeeLf~~Li~~i~~~~~  315 (592)
                      |+++|+++++.+...+.
T Consensus       155 i~~lf~~l~~~~~~~~~  171 (199)
T cd04110         155 VEEMFNCITELVLRAKK  171 (199)
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999999976543

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.95  E-value=7.6e-27  Score=221.59  Aligned_cols=171  Identities=26%  Similarity=0.489  Sum_probs=142.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHH
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVC  144 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~  144 (592)
                      |+|+|++|||||||+++|+.+.|...+.+|+.+.+...+.+++..+.++||||+|+                        
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------------   56 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQ------------------------   56 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCC------------------------
Confidence            68999999999999999999999988999998777778888999999999999999                        


Q ss_pred             HHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhhcCCCC
Q psy1524         145 LRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETKASTAV  223 (592)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~~~~~~  223 (592)
                                                     ++|..++..+++++|++|+|||+++++||+++. .|+..+...  .+++
T Consensus        57 -------------------------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~--~~~~  103 (174)
T smart00174       57 -------------------------------EDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHF--CPNT  103 (174)
T ss_pred             -------------------------------cccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCC
Confidence                                           777788888899999999999999999999996 488877664  3689


Q ss_pred             CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHH
Q psy1524         224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF  303 (592)
Q Consensus       224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf  303 (592)
                      |+|||+||+|+..+....        ..+           .....+.++.+++..+++......|++|||++|.||+++|
T Consensus       104 piilv~nK~Dl~~~~~~~--------~~~-----------~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf  164 (174)
T smart00174      104 PIILVGTKLDLREDKSTL--------REL-----------SKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVF  164 (174)
T ss_pred             CEEEEecChhhhhChhhh--------hhh-----------hcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHH
Confidence            999999999997541100        000           0112256888899999886555589999999999999999


Q ss_pred             HHHHHHHH
Q psy1524         304 KELLVQAK  311 (592)
Q Consensus       304 ~~Li~~i~  311 (592)
                      +.+++.+.
T Consensus       165 ~~l~~~~~  172 (174)
T smart00174      165 EEAIRAAL  172 (174)
T ss_pred             HHHHHHhc
Confidence            99998874

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01866 Rab2 Rab2 subfamily

Probab=99.95  E-value=2.8e-26  Score=217.70  Aligned_cols=165  Identities=25%  Similarity=0.429  Sum_probs=144.1

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      .+.+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.||||+|.                  
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------   63 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ------------------   63 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc------------------
Confidence            4568999999999999999999999998887777776 566677888888899999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           ++|..+...+++.+|++|+|||++++.||.++..|+..+... 
T Consensus        64 -------------------------------------~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~-  105 (168)
T cd01866          64 -------------------------------------ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH-  105 (168)
T ss_pred             -------------------------------------HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-
Confidence                                                 788888889999999999999999999999999999988775 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      ..+++|+|+|+||+|+...                               +.++.+++..++. .....++++||++|.|
T Consensus       106 ~~~~~pvivv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~  153 (168)
T cd01866         106 SNSNMTIMLIGNKCDLESR-------------------------------REVSYEEGEAFAK-EHGLIFMETSAKTASN  153 (168)
T ss_pred             CCCCCcEEEEEECcccccc-------------------------------cCCCHHHHHHHHH-HcCCEEEEEeCCCCCC
Confidence            3468999999999999754                               4567777777776 4567899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQAKV  312 (592)
Q Consensus       299 VeeLf~~Li~~i~~  312 (592)
                      |+++|..+++.+.+
T Consensus       154 i~~~~~~~~~~~~~  167 (168)
T cd01866         154 VEEAFINTAKEIYE  167 (168)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988743

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04125 RabA_like RabA-like subfamily

Probab=99.95  E-value=2.3e-26  Score=222.41  Aligned_cols=163  Identities=31%  Similarity=0.464  Sum_probs=143.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +||+|+|++|||||||+++|+++.|...+.+|++ +.....+.+++..+.+++|||+|+                     
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~---------------------   59 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQ---------------------   59 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc---------------------
Confidence            5899999999999999999999999887888887 566677888888999999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        +.|..++..+++++|++|+|||++++.||+.+..|+..+... ...
T Consensus        60 ----------------------------------~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~-~~~  104 (188)
T cd04125          60 ----------------------------------ERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRY-ARE  104 (188)
T ss_pred             ----------------------------------HHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCC
Confidence                                              778888899999999999999999999999999999988775 345


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|+|+|+||+|+.+.                               +.++.+++..+++ ...+++++|||++|.||++
T Consensus       105 ~~~~ivv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~evSa~~~~~i~~  152 (188)
T cd04125         105 NVIKVIVANKSDLVNN-------------------------------KVVDSNIAKSFCD-SLNIPFFETSAKQSINVEE  152 (188)
T ss_pred             CCeEEEEEECCCCccc-------------------------------ccCCHHHHHHHHH-HcCCeEEEEeCCCCCCHHH
Confidence            6899999999999765                               5667777777776 3456899999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy1524         302 VFKELLVQAKVK  313 (592)
Q Consensus       302 Lf~~Li~~i~~~  313 (592)
                      +|+.+++.+...
T Consensus       153 ~f~~l~~~~~~~  164 (188)
T cd04125         153 AFILLVKLIIKR  164 (188)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998654

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04177 RSR1 RSR1 subgroup

Probab=99.95  E-value=2.4e-26  Score=217.88  Aligned_cols=164  Identities=38%  Similarity=0.595  Sum_probs=145.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      .+||+++|++|||||||+++|+++.+...+.+|+.+.+.+.+.+++..+.+++|||+|+                     
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------------   59 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGT---------------------   59 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCc---------------------
Confidence            37999999999999999999999999888899998777788888999999999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        ++|..++..+++.+|++|+|||++++++|+.+..|...+.+.....
T Consensus        60 ----------------------------------~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~  105 (168)
T cd04177          60 ----------------------------------EQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSD  105 (168)
T ss_pred             ----------------------------------ccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCC
Confidence                                              7888899999999999999999999999999999999888765566


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|+|+|+||+|+...                               +.++.+++..+++.....+++++||++|.||++
T Consensus       106 ~~piiiv~nK~D~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~  154 (168)
T cd04177         106 NVPMVLVGNKADLEDD-------------------------------RQVSREDGVSLSQQWGNVPFYETSARKRTNVDE  154 (168)
T ss_pred             CCCEEEEEEChhcccc-------------------------------CccCHHHHHHHHHHcCCceEEEeeCCCCCCHHH
Confidence            8999999999998765                               556667777777644347899999999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         302 VFKELLVQAK  311 (592)
Q Consensus       302 Lf~~Li~~i~  311 (592)
                      +|++++.++.
T Consensus       155 ~f~~i~~~~~  164 (168)
T cd04177         155 VFIDLVRQII  164 (168)
T ss_pred             HHHHHHHHHh
Confidence            9999998763

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.95  E-value=2.6e-26  Score=221.19  Aligned_cols=170  Identities=26%  Similarity=0.423  Sum_probs=142.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +||+|+|++|||||||+++|+++.|.+.+.+|+.+.+...+..+ +..+.++||||+|+                     
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~---------------------   59 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQ---------------------   59 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCc---------------------
Confidence            58999999999999999999999999889999886665566665 77889999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHH-HHHHHHHhhcC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-IRDHIFETKAS  220 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~-~l~~L~~~~~~  220 (592)
                                                        ++|..++..+++++|++|+|||++++.||+++.. |+..+...  .
T Consensus        60 ----------------------------------~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~  103 (187)
T cd04132          60 ----------------------------------EEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF--C  103 (187)
T ss_pred             ----------------------------------hhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--C
Confidence                                              7888888889999999999999999999999975 77766543  4


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      .++|+|+|+||+|+.....                           ..+.++.+++..++.......+++|||++|.||+
T Consensus       104 ~~~piilv~nK~Dl~~~~~---------------------------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  156 (187)
T cd04132         104 PGTPIMLVGLKTDLRKDKN---------------------------LDRKVTPAQAESVAKKQGAFAYLECSAKTMENVE  156 (187)
T ss_pred             CCCCEEEEEeChhhhhCcc---------------------------ccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHH
Confidence            6799999999999975410                           1146777888888874444489999999999999


Q ss_pred             HHHHHHHHHHHHhccc
Q psy1524         301 QVFKELLVQAKVKYNL  316 (592)
Q Consensus       301 eLf~~Li~~i~~~~~~  316 (592)
                      ++|..+++.+......
T Consensus       157 ~~f~~l~~~~~~~~~~  172 (187)
T cd04132         157 EVFDTAIEEALKKEGK  172 (187)
T ss_pred             HHHHHHHHHHHhhhhh
Confidence            9999999999765543

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>COG5045 Ribosomal protein S10E [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=1.1e-28  Score=205.20  Aligned_cols=84  Identities=35%  Similarity=0.516  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHhhhccCCChh--hhccccCCCCCcccCCCCCCCCcCceeeeeecceEEEeEcchhHHHHHhhcCCCCCCC
Q psy1524         367 TQVFKELLVQAKVKYNLSPA--LRRRRRQSLPPVQHSPNPSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIV  444 (592)
Q Consensus       367 ~~lf~e~v~~akkd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~y~~l~~~g~~~l~~~l~~~~~~~  444 (592)
                      ..||++||.+||||||+++|  ++.+||++++     +||||.|+||||.+|+|||+||+||+||++|||+||+||+|+|
T Consensus        13 q~Lf~~gv~vakkDfnl~kH~el~ipNL~vik-----a~qsl~S~GYvkt~~~W~~~YytLT~eGveyLREyL~lp~e~V   87 (105)
T COG5045          13 QRLFQKGVAVAKKDFNLGKHRELEIPNLHVIK-----AMQSLISYGYVKTIHVWRHSYYTLTPEGVEYLREYLVLPDEGV   87 (105)
T ss_pred             HHHHHhhhhHhhhhccccCCcccCCCchHHHH-----HHHHHhhcceeEEEeeeeeeEEEecHHHHHHHHHHhcCccccC
Confidence            46999999999999999964  6666666665     8999999999999999999999999999999999999999999


Q ss_pred             ccccccccccC
Q psy1524         445 PSTLKRQARTT  455 (592)
Q Consensus       445 p~~~~~~~~~~  455 (592)
                      |+|.....++.
T Consensus        88 p~t~~~~v~pt   98 (105)
T COG5045          88 PSTEAPAVSPT   98 (105)
T ss_pred             ccccccccCcc
Confidence            99999865554

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.95  E-value=1.1e-26  Score=227.74  Aligned_cols=176  Identities=23%  Similarity=0.329  Sum_probs=130.9

Q ss_pred             ceEEEEEcCCCCcHHHHHH-HHHcC-----CCCCCccCcee--eeEEEE--------EeeCCeEEEEEEEeCCCCCCCCc
Q psy1524          62 RHKVVVMGGPKVGKSSIIH-RFLYN-----TFSPKYKRTIE--EMHHED--------FSMNGVHLKLDILDTSGEQSGKG  125 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLIn-rL~~~-----~f~~~~~~Tt~--d~~~~~--------v~vdg~~v~L~I~DT~G~~~~~~  125 (592)
                      .+||+++|++|||||||+. +++++     .|.+.+.||++  +.+...        +.+++..+.++||||+|+     
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~-----   76 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGD-----   76 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCC-----
Confidence            4799999999999999996 66554     35567889985  434332        257899999999999998     


Q ss_pred             ccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHH
Q psy1524         126 LKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFE  205 (592)
Q Consensus       126 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe  205 (592)
                                                                        ++  .+...++++||++|+|||++++.||+
T Consensus        77 --------------------------------------------------~~--~~~~~~~~~ad~iilv~d~t~~~Sf~  104 (195)
T cd01873          77 --------------------------------------------------HD--KDRRFAYGRSDVVLLCFSIASPNSLR  104 (195)
T ss_pred             --------------------------------------------------hh--hhhcccCCCCCEEEEEEECCChhHHH
Confidence                                                              22  13345789999999999999999999


Q ss_pred             HHH-HHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcC
Q psy1524         206 EIR-LIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDW  284 (592)
Q Consensus       206 ~l~-~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~  284 (592)
                      ++. .|+..+...  ..+.|+||||||+||.+......   ..     ...+.    .......+.|+.++++.+++ ..
T Consensus       105 ~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~---~~-----~~~~~----~~~~~~~~~V~~~e~~~~a~-~~  169 (195)
T cd01873         105 NVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEV---NR-----ARRPL----ARPIKNADILPPETGRAVAK-EL  169 (195)
T ss_pred             HHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchh---hh-----ccccc----ccccccCCccCHHHHHHHHH-Hh
Confidence            997 588888664  35789999999999965310000   00     00000    00001137899999999998 45


Q ss_pred             CCeEEEcccCCCccHHHHHHHHHHH
Q psy1524         285 ENGFVEASAKDNTNITQVFKELLVQ  309 (592)
Q Consensus       285 ~~~~~EvSAktg~gVeeLf~~Li~~  309 (592)
                      +++|+||||++|.||+++|+.++++
T Consensus       170 ~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         170 GIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            6799999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04112 Rab26 Rab26 subfamily

Probab=99.95  E-value=2.4e-26  Score=223.38  Aligned_cols=166  Identities=29%  Similarity=0.480  Sum_probs=143.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      +||+|+|++|||||||+++|+.+.+. ..+.+|++ ++....+.+++..+.++||||+|+                    
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--------------------   60 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ--------------------   60 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc--------------------
Confidence            58999999999999999999999886 46777877 555566788999999999999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         ++|..+...+++.+|++|+|||++++.||+++..|+..+.+. ..
T Consensus        61 -----------------------------------~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~-~~  104 (191)
T cd04112          61 -----------------------------------ERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEY-AQ  104 (191)
T ss_pred             -----------------------------------HHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CC
Confidence                                               778888888999999999999999999999999999988876 34


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      .++|+++|+||+|+...                               +.+..+++..+++ ....+|+++||++|.||+
T Consensus       105 ~~~piiiv~NK~Dl~~~-------------------------------~~~~~~~~~~l~~-~~~~~~~e~Sa~~~~~v~  152 (191)
T cd04112         105 EDVVIMLLGNKADMSGE-------------------------------RVVKREDGERLAK-EYGVPFMETSAKTGLNVE  152 (191)
T ss_pred             CCCcEEEEEEcccchhc-------------------------------cccCHHHHHHHHH-HcCCeEEEEeCCCCCCHH
Confidence            57899999999999754                               5666777777776 456789999999999999


Q ss_pred             HHHHHHHHHHHHhccc
Q psy1524         301 QVFKELLVQAKVKYNL  316 (592)
Q Consensus       301 eLf~~Li~~i~~~~~~  316 (592)
                      ++|+.+++.+......
T Consensus       153 ~l~~~l~~~~~~~~~~  168 (191)
T cd04112         153 LAFTAVAKELKHRKYE  168 (191)
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999999765433

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.95  E-value=2.1e-26  Score=229.59  Aligned_cols=161  Identities=25%  Similarity=0.393  Sum_probs=140.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ...+||+|+|++|||||||+++|+.+.|...+.+|++ +.....+..++..+.+.||||+|+                  
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~------------------   72 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ------------------   72 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCc------------------
Confidence            6679999999999999999999999999999999997 666667777888899999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           ++|..++..+++++|++|+|||++++.||+.+..|+..+... 
T Consensus        73 -------------------------------------~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~-  114 (219)
T PLN03071         73 -------------------------------------EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-  114 (219)
T ss_pred             -------------------------------------hhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHh-
Confidence                                                 788889999999999999999999999999999999999875 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                       ..++|+||||||+|+...                                .+..+++ .+++ ...+.|++|||++|.|
T Consensus       115 -~~~~piilvgNK~Dl~~~--------------------------------~v~~~~~-~~~~-~~~~~~~e~SAk~~~~  159 (219)
T PLN03071        115 -CENIPIVLCGNKVDVKNR--------------------------------QVKAKQV-TFHR-KKNLQYYEISAKSNYN  159 (219)
T ss_pred             -CCCCcEEEEEEchhhhhc--------------------------------cCCHHHH-HHHH-hcCCEEEEcCCCCCCC
Confidence             367999999999998632                                3333444 4544 4667899999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQAK  311 (592)
Q Consensus       299 VeeLf~~Li~~i~  311 (592)
                      |+++|+++++.+.
T Consensus       160 i~~~f~~l~~~~~  172 (219)
T PLN03071        160 FEKPFLYLARKLA  172 (219)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999884

>KOG0088|consensus

Probab=99.95  E-value=1.6e-27  Score=219.63  Aligned_cols=170  Identities=27%  Similarity=0.468  Sum_probs=155.8

Q ss_pred             CCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524          57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP  135 (592)
Q Consensus        57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~  135 (592)
                      ......|||+++|..-||||||+-||+.++|......|+. .+..+.+.+.+....+.||||+|+               
T Consensus         8 ~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQ---------------   72 (218)
T KOG0088|consen    8 DGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQ---------------   72 (218)
T ss_pred             cCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccch---------------
Confidence            3456789999999999999999999999999988888887 677888999999999999999999               


Q ss_pred             CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524         136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF  215 (592)
Q Consensus       136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~  215 (592)
                                                              |+|.++-+.||++++++|+|||++|++||+.++.|..+|+
T Consensus        73 ----------------------------------------ErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr  112 (218)
T KOG0088|consen   73 ----------------------------------------ERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELR  112 (218)
T ss_pred             ----------------------------------------HhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHH
Confidence                                                    9999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524         216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD  295 (592)
Q Consensus       216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt  295 (592)
                      ... ...+-+++||||+||.+.                               |+|+..+++++++ ..+..|+++||+.
T Consensus       113 ~ml-Gnei~l~IVGNKiDLEee-------------------------------R~Vt~qeAe~YAe-svGA~y~eTSAk~  159 (218)
T KOG0088|consen  113 TML-GNEIELLIVGNKIDLEEE-------------------------------RQVTRQEAEAYAE-SVGALYMETSAKD  159 (218)
T ss_pred             HHh-CCeeEEEEecCcccHHHh-------------------------------hhhhHHHHHHHHH-hhchhheeccccc
Confidence            874 456889999999999887                               8999999999998 5566799999999


Q ss_pred             CccHHHHHHHHHHHHHHhc
Q psy1524         296 NTNITQVFKELLVQAKVKY  314 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~~~~  314 (592)
                      +.||.|+|+.+...+.+..
T Consensus       160 N~Gi~elFe~Lt~~MiE~~  178 (218)
T KOG0088|consen  160 NVGISELFESLTAKMIEHS  178 (218)
T ss_pred             ccCHHHHHHHHHHHHHHHh
Confidence            9999999999999887653

>PLN03110 Rab GTPase; Provisional

Probab=99.94  E-value=4.6e-26  Score=226.43  Aligned_cols=167  Identities=28%  Similarity=0.443  Sum_probs=148.8

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .++.+||+|+|++|||||||+++|+++.+...+.+|++ ++..+.+.+++..+.++||||+|+                 
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~-----------------   71 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ-----------------   71 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCc-----------------
Confidence            35679999999999999999999999999888888887 677788889999999999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            ++|..+...+++.+|++|+|||++++.+|+.+..|+..+...
T Consensus        72 --------------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~  113 (216)
T PLN03110         72 --------------------------------------ERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDH  113 (216)
T ss_pred             --------------------------------------HHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHh
Confidence                                                  888899999999999999999999999999999999988775


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                       ...++|+|+|+||+|+...                               +.++.+++..++. ...++|+++||++|.
T Consensus       114 -~~~~~piiiv~nK~Dl~~~-------------------------------~~~~~~~~~~l~~-~~~~~~~e~SA~~g~  160 (216)
T PLN03110        114 -ADSNIVIMMAGNKSDLNHL-------------------------------RSVAEEDGQALAE-KEGLSFLETSALEAT  160 (216)
T ss_pred             -CCCCCeEEEEEEChhcccc-------------------------------cCCCHHHHHHHHH-HcCCEEEEEeCCCCC
Confidence             3467999999999999755                               6677788888876 457889999999999


Q ss_pred             cHHHHHHHHHHHHHHh
Q psy1524         298 NITQVFKELLVQAKVK  313 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~  313 (592)
                      ||+++|+.++..+...
T Consensus       161 ~v~~lf~~l~~~i~~~  176 (216)
T PLN03110        161 NVEKAFQTILLEIYHI  176 (216)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999998653

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.94  E-value=3.4e-26  Score=217.53  Aligned_cols=162  Identities=27%  Similarity=0.461  Sum_probs=142.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      .+||+++|++|||||||+++|+.+.+...+.+|++ +.....+.+++..+.++||||+|+                    
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--------------------   61 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQ--------------------   61 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCCh--------------------
Confidence            58999999999999999999999999888888887 666777888999999999999998                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchh-HHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFP-AMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                         ++|. .+...+++++|++|+|||++++.||..+..|+..+.....
T Consensus        62 -----------------------------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  106 (170)
T cd04115          62 -----------------------------------ERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL  106 (170)
T ss_pred             -----------------------------------HHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC
Confidence                                               6665 4677889999999999999999999999999998887655


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC---C
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD---N  296 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt---g  296 (592)
                      ..++|+|+|+||+|+...                               +.++.+++..+++ ...++|+||||++   +
T Consensus       107 ~~~~p~iiv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~~  154 (170)
T cd04115         107 PNEVPRILVGNKCDLREQ-------------------------------IQVPTDLAQRFAD-AHSMPLFETSAKDPSEN  154 (170)
T ss_pred             CCCCCEEEEEECccchhh-------------------------------cCCCHHHHHHHHH-HcCCcEEEEeccCCcCC
Confidence            568999999999999765                               6677788888877 4568899999999   8


Q ss_pred             ccHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQA  310 (592)
Q Consensus       297 ~gVeeLf~~Li~~i  310 (592)
                      .||+++|..+++.+
T Consensus       155 ~~i~~~f~~l~~~~  168 (170)
T cd04115         155 DHVEAIFMTLAHKL  168 (170)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998876

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.94  E-value=3.4e-26  Score=214.05  Aligned_cols=158  Identities=31%  Similarity=0.518  Sum_probs=138.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeC--CeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMN--GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vd--g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      +||+++|++|||||||+++|+++.+.+.+.+|+. +.....+.++  +..+.++||||+|+                   
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------------------   61 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ-------------------   61 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch-------------------
Confidence            5899999999999999999999999888888887 5556666776  77899999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          ++|..++..+++++|++++|||++++++|+.+..|+..+...  
T Consensus        62 ------------------------------------~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~--  103 (162)
T cd04106          62 ------------------------------------EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAE--  103 (162)
T ss_pred             ------------------------------------HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--
Confidence                                                788889999999999999999999999999999999988653  


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..++|+|+|+||+|+...                               +.++.+++..+++ ..+.+++++||++|.|+
T Consensus       104 ~~~~p~iiv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~v  151 (162)
T cd04106         104 CGDIPMVLVQTKIDLLDQ-------------------------------AVITNEEAEALAK-RLQLPLFRTSVKDDFNV  151 (162)
T ss_pred             CCCCCEEEEEEChhcccc-------------------------------cCCCHHHHHHHHH-HcCCeEEEEECCCCCCH
Confidence            468999999999999765                               5667778888877 45678999999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         300 TQVFKELLVQ  309 (592)
Q Consensus       300 eeLf~~Li~~  309 (592)
                      +++|+.+...
T Consensus       152 ~~l~~~l~~~  161 (162)
T cd04106         152 TELFEYLAEK  161 (162)
T ss_pred             HHHHHHHHHh
Confidence            9999998753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.94  E-value=3.8e-26  Score=217.16  Aligned_cols=160  Identities=24%  Similarity=0.399  Sum_probs=135.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +||+++|++|||||||+++|+.+.+...+.+|++ +.....+..++..+.+.+|||+|+                     
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~---------------------   59 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQ---------------------   59 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCC---------------------
Confidence            5999999999999999999999998888888887 566666677888899999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        +.+..++..++..+|++|+|||++++.||+.+..|+..+.+..  .
T Consensus        60 ----------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~  103 (166)
T cd00877          60 ----------------------------------EKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--G  103 (166)
T ss_pred             ----------------------------------hhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--C
Confidence                                              6677777788999999999999999999999999999998763  3


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|+|+|+||+|+...                                .+.. +...+++ .....++||||++|.||++
T Consensus       104 ~~piiiv~nK~Dl~~~--------------------------------~~~~-~~~~~~~-~~~~~~~e~Sa~~~~~v~~  149 (166)
T cd00877         104 NIPIVLCGNKVDIKDR--------------------------------KVKA-KQITFHR-KKNLQYYEISAKSNYNFEK  149 (166)
T ss_pred             CCcEEEEEEchhcccc--------------------------------cCCH-HHHHHHH-HcCCEEEEEeCCCCCChHH
Confidence            8999999999999732                                2222 3344544 4567899999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy1524         302 VFKELLVQAKVK  313 (592)
Q Consensus       302 Lf~~Li~~i~~~  313 (592)
                      +|++|++.+.+.
T Consensus       150 ~f~~l~~~~~~~  161 (166)
T cd00877         150 PFLWLARKLLGN  161 (166)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998653

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04126 Rab20 Rab20 subfamily

Probab=99.94  E-value=4.2e-26  Score=227.87  Aligned_cols=178  Identities=25%  Similarity=0.324  Sum_probs=139.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +||+|+|++|||||||+++|+.+.|.. +.+|++ +++...+    ..+.+.||||+|+                     
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~---------------------   54 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGR---------------------   54 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCc---------------------
Confidence            589999999999999999999999875 567776 4433322    4578899999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        +.|..+...+++++|++|+|||++++.||+++..|+..+.+. ...
T Consensus        55 ----------------------------------e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~-~~~   99 (220)
T cd04126          55 ----------------------------------EQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDT-ANE   99 (220)
T ss_pred             ----------------------------------ccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCC
Confidence                                              788889999999999999999999999999999998888765 346


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCC-------------CeE
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWE-------------NGF  288 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~-------------~~~  288 (592)
                      ++|+||||||+||.+.....+..         .-+   ...-.....+.++.+++..+++....             +.|
T Consensus       100 ~~piIlVgNK~DL~~~~~~~~~~---------~~~---~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~  167 (220)
T cd04126         100 DCLFAVVGNKLDLTEEGALAGQE---------KDA---GDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMC  167 (220)
T ss_pred             CCcEEEEEECccccccccccccc---------ccc---cccccccccccCCHHHHHHHHHHhCccccccccccccccceE
Confidence            78999999999997631100000         000   00011223588999999999885432             579


Q ss_pred             EEcccCCCccHHHHHHHHHHHHHHh
Q psy1524         289 VEASAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       289 ~EvSAktg~gVeeLf~~Li~~i~~~  313 (592)
                      +||||++|.||+++|..+++.+...
T Consensus       168 ~E~SA~tg~~V~elf~~i~~~~~~~  192 (220)
T cd04126         168 FETSAKTGYNVDELFEYLFNLVLPL  192 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999988654

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04113 Rab4 Rab4 subfamily

Probab=99.94  E-value=5.2e-26  Score=213.18  Aligned_cols=159  Identities=30%  Similarity=0.460  Sum_probs=140.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +||+|+|++|||||||+++|.++.+...+.++.+ +.....+.+++..+.++||||+|+                     
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~---------------------   59 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQ---------------------   59 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcch---------------------
Confidence            5999999999999999999999999888888877 566677788888899999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        +.|..+...+++++|++|+|||++++.+|..+..|+..+... ..+
T Consensus        60 ----------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~  104 (161)
T cd04113          60 ----------------------------------ERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARAL-ASP  104 (161)
T ss_pred             ----------------------------------HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCC
Confidence                                              778888888999999999999999999999999999988665 357


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|+++|+||+|+...                               +.++.+++..+++ .....++++||+++.||++
T Consensus       105 ~~~iivv~nK~D~~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~  152 (161)
T cd04113         105 NIVVILVGNKSDLADQ-------------------------------REVTFLEASRFAQ-ENGLLFLETSALTGENVEE  152 (161)
T ss_pred             CCeEEEEEEchhcchh-------------------------------ccCCHHHHHHHHH-HcCCEEEEEECCCCCCHHH
Confidence            8999999999999764                               5677788888877 4458899999999999999


Q ss_pred             HHHHHHHH
Q psy1524         302 VFKELLVQ  309 (592)
Q Consensus       302 Lf~~Li~~  309 (592)
                      +|+++++.
T Consensus       153 ~~~~~~~~  160 (161)
T cd04113         153 AFLKCARS  160 (161)
T ss_pred             HHHHHHHh
Confidence            99999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.94  E-value=3.5e-26  Score=215.69  Aligned_cols=161  Identities=34%  Similarity=0.564  Sum_probs=136.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV  143 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~  143 (592)
                      ||+|+|++|||||||+++|+.+.|...+.+|+...+...+.+++..+.++||||+|+                       
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~-----------------------   57 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQ-----------------------   57 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCC-----------------------
Confidence            699999999999999999999999888888887666777788999999999999998                       


Q ss_pred             HHHHhhccCCccccccccCcchhhhccccccCcc-hhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc-CC
Q psy1524         144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNE-FPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA-ST  221 (592)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~-~~  221 (592)
                                                      +. +......+++.+|++|+|||++++.||+.+..|+..+..... ..
T Consensus        58 --------------------------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  105 (165)
T cd04146          58 --------------------------------QQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDR  105 (165)
T ss_pred             --------------------------------cccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCC
Confidence                                            32 223445678899999999999999999999999998887643 45


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc-cHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT-NIT  300 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~-gVe  300 (592)
                      ++|+|+|+||+|+...                               +.++.+++..+++. .+.+|++|||++|. ||+
T Consensus       106 ~~piilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~~-~~~~~~e~Sa~~~~~~v~  153 (165)
T cd04146         106 EIPVILVGNKADLLHY-------------------------------RQVSTEEGEKLASE-LGCLFFEVSAAEDYDGVH  153 (165)
T ss_pred             CCCEEEEEECCchHHh-------------------------------CccCHHHHHHHHHH-cCCEEEEeCCCCCchhHH
Confidence            7999999999998755                               56777888888764 45789999999995 999


Q ss_pred             HHHHHHHHHHH
Q psy1524         301 QVFKELLVQAK  311 (592)
Q Consensus       301 eLf~~Li~~i~  311 (592)
                      ++|+.+++.+.
T Consensus       154 ~~f~~l~~~~~  164 (165)
T cd04146         154 SVFHELCREVR  164 (165)
T ss_pred             HHHHHHHHHHh
Confidence            99999998763

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>KOG0097|consensus

Probab=99.94  E-value=3.5e-26  Score=207.33  Aligned_cols=171  Identities=25%  Similarity=0.377  Sum_probs=158.0

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ...+.+|.+|+|+-|||||+|+.+|...+|..+-+.|++ ++-++.+.+.|.+++++||||+|+                
T Consensus         7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagq----------------   70 (215)
T KOG0097|consen    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ----------------   70 (215)
T ss_pred             chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccH----------------
Confidence            356789999999999999999999999999988888998 788899999999999999999999                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             |+|+...+.|+++|.+.++|||++.+.++.++..|+...+.
T Consensus        71 ---------------------------------------erfravtrsyyrgaagalmvyditrrstynhlsswl~dar~  111 (215)
T KOG0097|consen   71 ---------------------------------------ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN  111 (215)
T ss_pred             ---------------------------------------HHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhc
Confidence                                                   99999999999999999999999999999999999998877


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      . ..++.-|+++|||.||...                               |.|+.+++.+++. ..+..|+|+|||+|
T Consensus       112 l-tnpnt~i~lignkadle~q-------------------------------rdv~yeeak~fae-engl~fle~saktg  158 (215)
T KOG0097|consen  112 L-TNPNTVIFLIGNKADLESQ-------------------------------RDVTYEEAKEFAE-ENGLMFLEASAKTG  158 (215)
T ss_pred             c-CCCceEEEEecchhhhhhc-------------------------------ccCcHHHHHHHHh-hcCeEEEEeccccc
Confidence            6 5788899999999999876                               8899999999998 67788999999999


Q ss_pred             ccHHHHHHHHHHHHHHhccc
Q psy1524         297 TNITQVFKELLVQAKVKYNL  316 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~~~~~~  316 (592)
                      .||++.|-+..+++.+..+.
T Consensus       159 ~nvedafle~akkiyqniqd  178 (215)
T KOG0097|consen  159 QNVEDAFLETAKKIYQNIQD  178 (215)
T ss_pred             CcHHHHHHHHHHHHHHhhhc
Confidence            99999999999988766544

>cd04124 RabL2 RabL2 subfamily

Probab=99.94  E-value=6.8e-26  Score=213.81  Aligned_cols=159  Identities=25%  Similarity=0.412  Sum_probs=135.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +||+|+|++|||||||+++|+.+.|.+.+.+++. +.+...+.+++..+.++||||+|+                     
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------------   59 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQ---------------------   59 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc---------------------
Confidence            5899999999999999999999999888777776 566666778889999999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        ++|..++..+++++|++|+|||++++.+|+++..|+..+...  ..
T Consensus        60 ----------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~  103 (161)
T cd04124          60 ----------------------------------ERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY--RP  103 (161)
T ss_pred             ----------------------------------hhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CC
Confidence                                              888889999999999999999999999999999999988764  35


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      +.|+++|+||+|+...                                  ..++...++. ....+++++||++|.||++
T Consensus       104 ~~p~ivv~nK~Dl~~~----------------------------------~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~  148 (161)
T cd04124         104 EIPCIVVANKIDLDPS----------------------------------VTQKKFNFAE-KHNLPLYYVSAADGTNVVK  148 (161)
T ss_pred             CCcEEEEEECccCchh----------------------------------HHHHHHHHHH-HcCCeEEEEeCCCCCCHHH
Confidence            7899999999998532                                  1123344444 3467899999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy1524         302 VFKELLVQAKVK  313 (592)
Q Consensus       302 Lf~~Li~~i~~~  313 (592)
                      +|+.+++.+...
T Consensus       149 l~~~l~~~~~~~  160 (161)
T cd04124         149 LFQDAIKLAVSY  160 (161)
T ss_pred             HHHHHHHHHHhc
Confidence            999999887543

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PLN03108 Rab family protein; Provisional

Probab=99.94  E-value=1.1e-25  Score=222.73  Aligned_cols=167  Identities=26%  Similarity=0.396  Sum_probs=147.2

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      .+.+||+|+|++|||||||+++|+...|...+.+|++ ++....+.+++..+.+++|||+|+                  
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~------------------   65 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ------------------   65 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCc------------------
Confidence            4679999999999999999999999999888888887 566777888999999999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           +.|..++..+++.+|++|+|||++++.+|+.+..|+..+... 
T Consensus        66 -------------------------------------~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~-  107 (210)
T PLN03108         66 -------------------------------------ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH-  107 (210)
T ss_pred             -------------------------------------HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHh-
Confidence                                                 778888888999999999999999999999999999887665 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      ...++|+|+|+||+|+...                               +.++.++++.+++ ..+++|+++||+++.|
T Consensus       108 ~~~~~piiiv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~  155 (210)
T PLN03108        108 ANANMTIMLIGNKCDLAHR-------------------------------RAVSTEEGEQFAK-EHGLIFMEASAKTAQN  155 (210)
T ss_pred             cCCCCcEEEEEECccCccc-------------------------------cCCCHHHHHHHHH-HcCCEEEEEeCCCCCC
Confidence            3467999999999999765                               5678888888887 4567899999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q psy1524         299 ITQVFKELLVQAKVKY  314 (592)
Q Consensus       299 VeeLf~~Li~~i~~~~  314 (592)
                      |+++|+++++.+..+.
T Consensus       156 v~e~f~~l~~~~~~~~  171 (210)
T PLN03108        156 VEEAFIKTAAKIYKKI  171 (210)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999987553

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.94  E-value=4e-26  Score=217.65  Aligned_cols=170  Identities=24%  Similarity=0.416  Sum_probs=141.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      +||+++|++|||||||+++|..+.|...+.+|+.+.+...+.+++..+.++||||+|+                      
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~----------------------   58 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQ----------------------   58 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCC----------------------
Confidence            5899999999999999999999999999999998888788889998999999999999                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhhcCC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETKAST  221 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~~~~  221 (592)
                                                       ++|..++..+++++|++|+|||++++.||+++. .|+..+...  ..
T Consensus        59 ---------------------------------~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~  103 (173)
T cd04130          59 ---------------------------------DEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH--NP  103 (173)
T ss_pred             ---------------------------------hhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhh--CC
Confidence                                             677777788899999999999999999999985 577777653  35


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|+++|+||+|+......                   ...-.....+.+..+++..+++......|++|||++|.||++
T Consensus       104 ~~piilv~nK~Dl~~~~~~-------------------~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~  164 (173)
T cd04130         104 KAPIILVGTQADLRTDVNV-------------------LIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKE  164 (173)
T ss_pred             CCCEEEEeeChhhccChhH-------------------HHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHH
Confidence            7999999999998653100                   000011123778889999998855555899999999999999


Q ss_pred             HHHHHHH
Q psy1524         302 VFKELLV  308 (592)
Q Consensus       302 Lf~~Li~  308 (592)
                      +|+.++-
T Consensus       165 lf~~~~~  171 (173)
T cd04130         165 VFDTAIL  171 (173)
T ss_pred             HHHHHHh
Confidence            9998864

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>KOG0081|consensus

Probab=99.94  E-value=1.7e-27  Score=219.74  Aligned_cols=169  Identities=22%  Similarity=0.388  Sum_probs=155.6

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEee---------CCeEEEEEEEeCCCCCCCCccc
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSM---------NGVHLKLDILDTSGEQSGKGLK  127 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~v---------dg~~v~L~I~DT~G~~~~~~~~  127 (592)
                      ..++.+|.+.+|++||||||++.+++.++|......|++ |+..+.+..         .+..+.+++|||+|+       
T Consensus         5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQ-------   77 (219)
T KOG0081|consen    5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQ-------   77 (219)
T ss_pred             cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccH-------
Confidence            467889999999999999999999999999998888988 777777765         245789999999999       


Q ss_pred             ccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH
Q psy1524         128 CGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI  207 (592)
Q Consensus       128 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l  207 (592)
                                                                      |+|+++...++++|-+++++||+++..||-++
T Consensus        78 ------------------------------------------------ERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnv  109 (219)
T KOG0081|consen   78 ------------------------------------------------ERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNV  109 (219)
T ss_pred             ------------------------------------------------HHHHHHHHHHHHhhccceEEEeccchHHHHHH
Confidence                                                            99999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCe
Q psy1524         208 RLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG  287 (592)
Q Consensus       208 ~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~  287 (592)
                      ..|+..|.-+..++++-||++|||+||.+.                               |.|+.+++.+++. ..+.+
T Consensus       110 rnWlSQL~~hAYcE~PDivlcGNK~DL~~~-------------------------------R~Vs~~qa~~La~-kyglP  157 (219)
T KOG0081|consen  110 RNWLSQLQTHAYCENPDIVLCGNKADLEDQ-------------------------------RVVSEDQAAALAD-KYGLP  157 (219)
T ss_pred             HHHHHHHHHhhccCCCCEEEEcCccchhhh-------------------------------hhhhHHHHHHHHH-HhCCC
Confidence            999999999888999999999999999887                               8999999999998 78899


Q ss_pred             EEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524         288 FVEASAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       288 ~~EvSAktg~gVeeLf~~Li~~i~~~  313 (592)
                      |||+||.+|.||++..+-++..+.+.
T Consensus       158 YfETSA~tg~Nv~kave~LldlvM~R  183 (219)
T KOG0081|consen  158 YFETSACTGTNVEKAVELLLDLVMKR  183 (219)
T ss_pred             eeeeccccCcCHHHHHHHHHHHHHHH
Confidence            99999999999999999888877554

>cd04135 Tc10 TC10 subfamily

Probab=99.94  E-value=6.7e-26  Score=215.11  Aligned_cols=172  Identities=23%  Similarity=0.425  Sum_probs=141.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      +||+|+|++|||||||+++|+.+.|.+.+.+|+.+.+...+.+++..+.+.||||+|+                      
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~----------------------   58 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ----------------------   58 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCc----------------------
Confidence            5899999999999999999999999988999988777778888999999999999999                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhhcCC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETKAST  221 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~~~~  221 (592)
                                                       +.|..++..++.++|++|+|||++++.+|+.+. .|+..+...  ..
T Consensus        59 ---------------------------------~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~--~~  103 (174)
T cd04135          59 ---------------------------------EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--AP  103 (174)
T ss_pred             ---------------------------------ccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CC
Confidence                                             566667777889999999999999999999996 466666543  56


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      +.|+++|+||+|+.+......                   .......+.++.+++..+++......|++|||++|.||++
T Consensus       104 ~~piivv~nK~Dl~~~~~~~~-------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~  164 (174)
T cd04135         104 NVPYLLVGTQIDLRDDPKTLA-------------------RLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKT  164 (174)
T ss_pred             CCCEEEEeEchhhhcChhhHH-------------------HHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHH
Confidence            899999999999865421000                   0011123578888999998865556799999999999999


Q ss_pred             HHHHHHHHH
Q psy1524         302 VFKELLVQA  310 (592)
Q Consensus       302 Lf~~Li~~i  310 (592)
                      +|+.+++.+
T Consensus       165 ~f~~~~~~~  173 (174)
T cd04135         165 VFDEAILAI  173 (174)
T ss_pred             HHHHHHHHh
Confidence            999999876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.94  E-value=2.1e-25  Score=209.41  Aligned_cols=159  Identities=26%  Similarity=0.408  Sum_probs=135.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC--CCCCCccCcee-eeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN--TFSPKYKRTIE-EMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~--~f~~~~~~Tt~-d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      +||+++|++|||||||+++|..+  .|...+.+|++ +.....+.++ +..+.+.+|||+|+                  
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------   62 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ------------------   62 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH------------------
Confidence            58999999999999999999965  68888999987 6666666664 67799999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           +.+..+...++.++|++++|||++++.+|+.+..|+..+....
T Consensus        63 -------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~  105 (164)
T cd04101          63 -------------------------------------ELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS  105 (164)
T ss_pred             -------------------------------------HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC
Confidence                                                 7888888999999999999999999999999999999887652


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                        .++|+|+|+||+|+...                               +.++..++..+.. ...+.+++|||++|.|
T Consensus       106 --~~~p~ilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~g  151 (164)
T cd04101         106 --KHMPGVLVGNKMDLADK-------------------------------AEVTDAQAQAFAQ-ANQLKFFKTSALRGVG  151 (164)
T ss_pred             --CCCCEEEEEECcccccc-------------------------------cCCCHHHHHHHHH-HcCCeEEEEeCCCCCC
Confidence              57899999999999755                               4556656666654 4557899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQA  310 (592)
Q Consensus       299 VeeLf~~Li~~i  310 (592)
                      |+++|+.+++.+
T Consensus       152 i~~l~~~l~~~~  163 (164)
T cd04101         152 YEEPFESLARAF  163 (164)
T ss_pred             hHHHHHHHHHHh
Confidence            999999998875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PLN03118 Rab family protein; Provisional

Probab=99.94  E-value=5.1e-25  Score=217.52  Aligned_cols=171  Identities=26%  Similarity=0.420  Sum_probs=141.3

Q ss_pred             CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524          56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG  134 (592)
Q Consensus        56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~  134 (592)
                      +......+||+|+|++|||||||+++|+++.+. .+.+|++ +.....+.+++..+.+.||||+|+              
T Consensus         8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--------------   72 (211)
T PLN03118          8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQ--------------   72 (211)
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCc--------------
Confidence            444566799999999999999999999988774 5667776 555667778888899999999999              


Q ss_pred             CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHH-HH
Q psy1524         135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIR-DH  213 (592)
Q Consensus       135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l-~~  213 (592)
                                                               ++|..++..+++.+|++|+|||++++.+|+++..++ ..
T Consensus        73 -----------------------------------------~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~  111 (211)
T PLN03118         73 -----------------------------------------ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKE  111 (211)
T ss_pred             -----------------------------------------hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence                                                     888889999999999999999999999999998744 44


Q ss_pred             HHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEccc
Q psy1524         214 IFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASA  293 (592)
Q Consensus       214 L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSA  293 (592)
                      +.......+.|+|+|+||+|+...                               +.++.+++..++. ...+.|++|||
T Consensus       112 ~~~~~~~~~~~~ilv~NK~Dl~~~-------------------------------~~i~~~~~~~~~~-~~~~~~~e~SA  159 (211)
T PLN03118        112 VELYSTNQDCVKMLVGNKVDRESE-------------------------------RDVSREEGMALAK-EHGCLFLECSA  159 (211)
T ss_pred             HHHhcCCCCCCEEEEEECcccccc-------------------------------CccCHHHHHHHHH-HcCCEEEEEeC
Confidence            443323456899999999999765                               4566677777766 45678999999


Q ss_pred             CCCccHHHHHHHHHHHHHHhc
Q psy1524         294 KDNTNITQVFKELLVQAKVKY  314 (592)
Q Consensus       294 ktg~gVeeLf~~Li~~i~~~~  314 (592)
                      ++|.||+++|+.+++.+....
T Consensus       160 k~~~~v~~l~~~l~~~~~~~~  180 (211)
T PLN03118        160 KTRENVEQCFEELALKIMEVP  180 (211)
T ss_pred             CCCCCHHHHHHHHHHHHHhhh
Confidence            999999999999999996654

>cd04118 Rab24 Rab24 subfamily

Probab=99.94  E-value=2.8e-25  Score=215.32  Aligned_cols=166  Identities=25%  Similarity=0.442  Sum_probs=140.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCC-CccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSP-KYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~-~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      +||+|+|++|||||||+++|+++.|.. .+.+|++ ++..+.+.+++..+.++||||+|+                    
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~--------------------   60 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS--------------------   60 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCc--------------------
Confidence            589999999999999999999998874 6888887 455667889999999999999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         +++..+...++.++|++|+|||+++..||+++..|+..+...  .
T Consensus        61 -----------------------------------~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~--~  103 (193)
T cd04118          61 -----------------------------------ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL--E  103 (193)
T ss_pred             -----------------------------------hhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc--C
Confidence                                               677778888899999999999999999999999999988764  3


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      .+.|+++|+||+|+.....                           ..+.+..+++..++. .....++++||++|.||+
T Consensus       104 ~~~piilv~nK~Dl~~~~~---------------------------~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~  155 (193)
T cd04118         104 EHCKIYLCGTKSDLIEQDR---------------------------SLRQVDFHDVQDFAD-EIKAQHFETSSKTGQNVD  155 (193)
T ss_pred             CCCCEEEEEEccccccccc---------------------------ccCccCHHHHHHHHH-HcCCeEEEEeCCCCCCHH
Confidence            5789999999999865310                           114566667777765 445779999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy1524         301 QVFKELLVQAKVK  313 (592)
Q Consensus       301 eLf~~Li~~i~~~  313 (592)
                      ++|+.+++.+...
T Consensus       156 ~l~~~i~~~~~~~  168 (193)
T cd04118         156 ELFQKVAEDFVSR  168 (193)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988643

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.94  E-value=3e-25  Score=207.20  Aligned_cols=162  Identities=33%  Similarity=0.621  Sum_probs=141.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      +||+++|++|||||||+++|+.+.+...+.+++.+.+.+...+++..+.+++|||+|+                      
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------------------   58 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQ----------------------   58 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCCh----------------------
Confidence            5899999999999999999999999988999998888888888999999999999999                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA  222 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~  222 (592)
                                                       +++..++..+++.+|++++|||++++.+|..+..|+..+.......+
T Consensus        59 ---------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  105 (164)
T cd04139          59 ---------------------------------EDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDN  105 (164)
T ss_pred             ---------------------------------hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence                                             67778888899999999999999999999999999998888755568


Q ss_pred             CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHH
Q psy1524         223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV  302 (592)
Q Consensus       223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeL  302 (592)
                      +|+++|+||+|+...                               +.+..++...+++ .++.+++++||++|.||+++
T Consensus       106 ~piiiv~NK~D~~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l  153 (164)
T cd04139         106 VPLLLVGNKCDLEDK-------------------------------RQVSSEEAANLAR-QWGVPYVETSAKTRQNVEKA  153 (164)
T ss_pred             CCEEEEEEccccccc-------------------------------cccCHHHHHHHHH-HhCCeEEEeeCCCCCCHHHH
Confidence            999999999999753                               2344555566655 45678999999999999999


Q ss_pred             HHHHHHHHH
Q psy1524         303 FKELLVQAK  311 (592)
Q Consensus       303 f~~Li~~i~  311 (592)
                      |+.+++.+.
T Consensus       154 ~~~l~~~~~  162 (164)
T cd04139         154 FYDLVREIR  162 (164)
T ss_pred             HHHHHHHHH
Confidence            999998774

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01892 Miro2 Miro2 subfamily

Probab=99.94  E-value=1.1e-25  Score=214.89  Aligned_cols=163  Identities=21%  Similarity=0.262  Sum_probs=133.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceee-eEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEE-MHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d-~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .+.+||+|+|++|||||||+++|+++.|. ..+.+|+++ +....+.+++..+.+.+||++|.                 
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~-----------------   64 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGED-----------------   64 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCc-----------------
Confidence            35799999999999999999999999998 889999984 44566788898889999999998                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            +.+..+...+++++|++|+|||++++.+|+.+..|+..+.. 
T Consensus        65 --------------------------------------~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~-  105 (169)
T cd01892          65 --------------------------------------EVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFM-  105 (169)
T ss_pred             --------------------------------------ccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhcc-
Confidence                                                  66777778889999999999999999999999888876532 


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                        ..++|+++|+||+|+.+.                               +.+..++...+++......++++||++|.
T Consensus       106 --~~~~p~iiv~NK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (169)
T cd01892         106 --LGEIPCLFVAAKADLDEQ-------------------------------QQRYEVQPDEFCRKLGLPPPLHFSSKLGD  152 (169)
T ss_pred             --CCCCeEEEEEEccccccc-------------------------------ccccccCHHHHHHHcCCCCCEEEEeccCc
Confidence              247899999999999654                               22333344555553322346999999999


Q ss_pred             cHHHHHHHHHHHHH
Q psy1524         298 NITQVFKELLVQAK  311 (592)
Q Consensus       298 gVeeLf~~Li~~i~  311 (592)
                      ||+++|+.+++.+.
T Consensus       153 ~v~~lf~~l~~~~~  166 (169)
T cd01892         153 SSNELFTKLATAAQ  166 (169)
T ss_pred             cHHHHHHHHHHHhh
Confidence            99999999998874

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.93  E-value=2.5e-25  Score=217.59  Aligned_cols=175  Identities=60%  Similarity=0.989  Sum_probs=147.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV  143 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~  143 (592)
                      ||+|+|++|||||||+++|+.+.+...+.+|+.+.....+.+++..+.++||||+|+                       
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~-----------------------   57 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGS-----------------------   57 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCc-----------------------
Confidence            699999999999999999999999888888888777778888998899999999999                       


Q ss_pred             HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524         144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV  223 (592)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~  223 (592)
                                                      +.|..++..++..+|++|+|||++++.+|+.+..|+..+.+.....++
T Consensus        58 --------------------------------~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~  105 (198)
T cd04147          58 --------------------------------YSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFV  105 (198)
T ss_pred             --------------------------------hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence                                            777888888999999999999999999999999999988886555679


Q ss_pred             CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHH
Q psy1524         224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF  303 (592)
Q Consensus       224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf  303 (592)
                      |+|+|+||+|+....                              +.+..+++.......+...++++||++|.||+++|
T Consensus       106 piilv~NK~Dl~~~~------------------------------~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  155 (198)
T cd04147         106 PIVVVGNKADSLEEE------------------------------RQVPAKDALSTVELDWNCGFVETSAKDNENVLEVF  155 (198)
T ss_pred             cEEEEEEcccccccc------------------------------ccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHH
Confidence            999999999986531                              34444455444433455679999999999999999


Q ss_pred             HHHHHHHHHhcccChhhhhh
Q psy1524         304 KELLVQAKVKYNLSPALRRR  323 (592)
Q Consensus       304 ~~Li~~i~~~~~~~~~~~~~  323 (592)
                      +++++.+.......+...+.
T Consensus       156 ~~l~~~~~~~~~~~~~~~~~  175 (198)
T cd04147         156 KELLRQANLPYNLSPALRRR  175 (198)
T ss_pred             HHHHHHhhcccccchhhHHH
Confidence            99999997776666654443

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.93  E-value=4.3e-25  Score=206.44  Aligned_cols=161  Identities=35%  Similarity=0.552  Sum_probs=140.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +||+++|++|||||||+++|.+..+...+.+++. +.....+.+++..+.+++||++|+                     
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~---------------------   59 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ---------------------   59 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh---------------------
Confidence            5999999999999999999999988877777777 556677788888889999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        +++..+...+++.+|++|+|||++++.+++.+..|+..+.... ..
T Consensus        60 ----------------------------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~-~~  104 (164)
T smart00175       60 ----------------------------------ERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYA-DP  104 (164)
T ss_pred             ----------------------------------HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CC
Confidence                                              7788888899999999999999999999999999999887763 36


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|+++|+||+|+...                               +.+..+.+..+++ ..++.++++||++|.|+++
T Consensus       105 ~~pivvv~nK~D~~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~i~~  152 (164)
T smart00175      105 NVVIMLVGNKSDLEDQ-------------------------------RQVSREEAEAFAE-EHGLPFFETSAKTNTNVEE  152 (164)
T ss_pred             CCeEEEEEEchhcccc-------------------------------cCCCHHHHHHHHH-HcCCeEEEEeCCCCCCHHH
Confidence            8999999999998754                               4566677777776 4567899999999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         302 VFKELLVQAK  311 (592)
Q Consensus       302 Lf~~Li~~i~  311 (592)
                      +|+.+++.+.
T Consensus       153 l~~~i~~~~~  162 (164)
T smart00175      153 AFEELAREIL  162 (164)
T ss_pred             HHHHHHHHHh
Confidence            9999999874

Rab GTPases are implicated in vesicle trafficking.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.93  E-value=2.2e-25  Score=219.53  Aligned_cols=155  Identities=23%  Similarity=0.375  Sum_probs=135.1

Q ss_pred             EcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHH
Q psy1524          68 MGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLR  146 (592)
Q Consensus        68 vG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~  146 (592)
                      +|++|||||||+++|+.+.|...+.+|++ +.....+.+++..+.++||||+|+                          
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~--------------------------   54 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQ--------------------------   54 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCc--------------------------
Confidence            69999999999999999999888999997 677777888999999999999999                          


Q ss_pred             HhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEE
Q psy1524         147 RALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIV  226 (592)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PII  226 (592)
                                                   ++|..++..|++++|++|+|||++++.||+.+..|+..+.+.  ..++|+|
T Consensus        55 -----------------------------e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~--~~~~pii  103 (200)
T smart00176       55 -----------------------------EKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRV--CENIPIV  103 (200)
T ss_pred             -----------------------------hhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHh--CCCCCEE
Confidence                                         889999999999999999999999999999999999999875  3589999


Q ss_pred             EEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHH
Q psy1524         227 VVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKEL  306 (592)
Q Consensus       227 LVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~L  306 (592)
                      |||||+|+...                                .+..+. ..+++ ...+.|+||||++|.||+++|+++
T Consensus       104 lvgNK~Dl~~~--------------------------------~v~~~~-~~~~~-~~~~~~~e~SAk~~~~v~~~F~~l  149 (200)
T smart00176      104 LCGNKVDVKDR--------------------------------KVKAKS-ITFHR-KKNLQYYDISAKSNYNFEKPFLWL  149 (200)
T ss_pred             EEEECcccccc--------------------------------cCCHHH-HHHHH-HcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999998532                                333333 34544 456789999999999999999999


Q ss_pred             HHHHHHh
Q psy1524         307 LVQAKVK  313 (592)
Q Consensus       307 i~~i~~~  313 (592)
                      ++.+...
T Consensus       150 ~~~i~~~  156 (200)
T smart00176      150 ARKLIGD  156 (200)
T ss_pred             HHHHHhc
Confidence            9988543

Ran is involved in the active transport of proteins through nuclear pores.

>cd01861 Rab6 Rab6 subfamily

Probab=99.93  E-value=3.6e-25  Score=206.96  Aligned_cols=159  Identities=31%  Similarity=0.569  Sum_probs=138.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +||+++|++|||||||+++|++..+...+.+++. +.....+.+++..+.+++|||+|+                     
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~---------------------   59 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ---------------------   59 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCc---------------------
Confidence            4899999999999999999999998877777777 777888888888889999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        +++..+...+++.+|++|+|||++++.+|+.+..|+..+... ...
T Consensus        60 ----------------------------------~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~  104 (161)
T cd01861          60 ----------------------------------ERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDE-RGN  104 (161)
T ss_pred             ----------------------------------HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCC
Confidence                                              778888888999999999999999999999999999988665 234


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      +.|+++|+||+|+...                               +.+..++...+++ ..+..++++||++|.|+++
T Consensus       105 ~~~iilv~nK~D~~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~  152 (161)
T cd01861         105 DVIIVLVGNKTDLSDK-------------------------------RQVSTEEGEKKAK-ELNAMFIETSAKAGHNVKE  152 (161)
T ss_pred             CCEEEEEEEChhcccc-------------------------------CccCHHHHHHHHH-HhCCEEEEEeCCCCCCHHH
Confidence            7999999999999644                               4566677777766 4457899999999999999


Q ss_pred             HHHHHHHH
Q psy1524         302 VFKELLVQ  309 (592)
Q Consensus       302 Lf~~Li~~  309 (592)
                      +|+++++.
T Consensus       153 l~~~i~~~  160 (161)
T cd01861         153 LFRKIASA  160 (161)
T ss_pred             HHHHHHHh
Confidence            99999874

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.93  E-value=5.9e-25  Score=205.89  Aligned_cols=161  Identities=29%  Similarity=0.482  Sum_probs=140.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      .+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.+.+|||+|+                    
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~--------------------   60 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ--------------------   60 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch--------------------
Confidence            37999999999999999999999999887788877 466778889999999999999998                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         +++..++..+++++|++|+|||++++.+|+.+..|+..+.... .
T Consensus        61 -----------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~  104 (163)
T cd01860          61 -----------------------------------ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNA-S  104 (163)
T ss_pred             -----------------------------------HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C
Confidence                                               7788888889999999999999999999999999999988763 4


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      ...|+|+|+||+|+...                               +.+..++...++. .....++++||++|.|++
T Consensus       105 ~~~~iivv~nK~D~~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~  152 (163)
T cd01860         105 PNIIIALVGNKADLESK-------------------------------RQVSTEEAQEYAD-ENGLLFFETSAKTGENVN  152 (163)
T ss_pred             CCCeEEEEEECcccccc-------------------------------CcCCHHHHHHHHH-HcCCEEEEEECCCCCCHH
Confidence            77999999999998754                               4556667777766 345789999999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         301 QVFKELLVQA  310 (592)
Q Consensus       301 eLf~~Li~~i  310 (592)
                      ++|+++++.+
T Consensus       153 ~l~~~l~~~l  162 (163)
T cd01860         153 ELFTEIAKKL  162 (163)
T ss_pred             HHHHHHHHHh
Confidence            9999999875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04148 RGK RGK subfamily

Probab=99.93  E-value=4e-25  Score=220.61  Aligned_cols=162  Identities=26%  Similarity=0.450  Sum_probs=137.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      +||+|+|++|||||||+++|+.+.+. ..+.++.. +.+.+.+.+++..+.+.||||+|+                    
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~--------------------   60 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQ--------------------   60 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCc--------------------
Confidence            58999999999999999999988886 67777776 777888889999999999999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh-cCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS-SADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~-~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                         +  ..+...++. ++|++|+|||++|+.||+.+..|+..+.....
T Consensus        61 -----------------------------------~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~  103 (221)
T cd04148          61 -----------------------------------E--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ  103 (221)
T ss_pred             -----------------------------------c--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence                                               3  122334556 89999999999999999999999998877644


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..++|+|+|+||+|+...                               +.++.+++..++. ...+.|++|||++|.||
T Consensus       104 ~~~~piilV~NK~Dl~~~-------------------------------~~v~~~~~~~~a~-~~~~~~~e~SA~~~~gv  151 (221)
T cd04148         104 LEDRPIILVGNKSDLARS-------------------------------REVSVQEGRACAV-VFDCKFIETSAGLQHNV  151 (221)
T ss_pred             CCCCCEEEEEEChhcccc-------------------------------ceecHHHHHHHHH-HcCCeEEEecCCCCCCH
Confidence            468999999999999765                               5677777777766 45678999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy1524         300 TQVFKELLVQAKVK  313 (592)
Q Consensus       300 eeLf~~Li~~i~~~  313 (592)
                      +++|+.+++.+...
T Consensus       152 ~~l~~~l~~~~~~~  165 (221)
T cd04148         152 DELLEGIVRQIRLR  165 (221)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998543

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01862 Rab7 Rab7 subfamily

Probab=99.93  E-value=9.3e-25  Score=206.07  Aligned_cols=165  Identities=30%  Similarity=0.525  Sum_probs=140.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +||+|+|++|||||||+++|.+..+...+.+|+. +.....+.+++..+.+++||++|+                     
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~---------------------   59 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQ---------------------   59 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCCh---------------------
Confidence            5899999999999999999999998888888877 666777888998999999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc--
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA--  219 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~--  219 (592)
                                                        +.+..++..+++++|++|+|||++++.+|+++..|...+.....  
T Consensus        60 ----------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  105 (172)
T cd01862          60 ----------------------------------ERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPS  105 (172)
T ss_pred             ----------------------------------HHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCcc
Confidence                                              77788888899999999999999999999999888887765432  


Q ss_pred             -CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         220 -STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       220 -~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                       ..++|+++|+||+|+..+                               +.++.++...+.+......++++||++|.|
T Consensus       106 ~~~~~p~ilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  154 (172)
T cd01862         106 DPENFPFVVLGNKIDLEEK-------------------------------RQVSTKKAQQWCQSNGNIPYFETSAKEAIN  154 (172)
T ss_pred             CCCCceEEEEEECcccccc-------------------------------cccCHHHHHHHHHHcCCceEEEEECCCCCC
Confidence             237899999999999754                               345566666776644457899999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy1524         299 ITQVFKELLVQAKVK  313 (592)
Q Consensus       299 VeeLf~~Li~~i~~~  313 (592)
                      ++++|+.+++.+.+.
T Consensus       155 v~~l~~~i~~~~~~~  169 (172)
T cd01862         155 VEQAFETIARKALEQ  169 (172)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999988654

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.93  E-value=4.5e-25  Score=209.65  Aligned_cols=172  Identities=26%  Similarity=0.445  Sum_probs=138.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      .||+|+|++|||||||+++|.++.|.+.+.+|+.+.+...+.+++..+.+.||||+|+                      
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~----------------------   59 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ----------------------   59 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCc----------------------
Confidence            5999999999999999999999999988999998776677788999999999999999                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHH-HHHHHHHhhcCC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-IRDHIFETKAST  221 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~-~l~~L~~~~~~~  221 (592)
                                                       +.|..++..++.++|++++|||++++++|+++.. |+..+...  ..
T Consensus        60 ---------------------------------~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~--~~  104 (175)
T cd01870          60 ---------------------------------EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CP  104 (175)
T ss_pred             ---------------------------------hhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CC
Confidence                                             6666666667899999999999999999999864 66666553  35


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|+++|+||+|+.......        ..+           .....+.+..++++.+++......+++|||++|.||++
T Consensus       105 ~~piilv~nK~Dl~~~~~~~--------~~i-----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  165 (175)
T cd01870         105 NVPIILVGNKKDLRNDEHTR--------REL-----------AKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVRE  165 (175)
T ss_pred             CCCEEEEeeChhcccChhhh--------hhh-----------hhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHH
Confidence            78999999999987541100        000           01112456677888888755556899999999999999


Q ss_pred             HHHHHHHHH
Q psy1524         302 VFKELLVQA  310 (592)
Q Consensus       302 Lf~~Li~~i  310 (592)
                      +|+.+++.+
T Consensus       166 lf~~l~~~~  174 (175)
T cd01870         166 VFEMATRAA  174 (175)
T ss_pred             HHHHHHHHh
Confidence            999998765

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>KOG0083|consensus

Probab=99.93  E-value=8.8e-27  Score=209.40  Aligned_cols=160  Identities=29%  Similarity=0.463  Sum_probs=146.6

Q ss_pred             EEEcCCCCcHHHHHHHHHcCCCC-CCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524          66 VVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV  143 (592)
Q Consensus        66 vIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~  143 (592)
                      +++|++++|||+|+-||..+.|. .+...|++ |+-.+.+.+++.++++++|||+|+                       
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagq-----------------------   57 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQ-----------------------   57 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccch-----------------------
Confidence            37899999999999999988876 45567777 888888899999999999999999                       


Q ss_pred             HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524         144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV  223 (592)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~  223 (592)
                                                      |+|++....||++||+++++||++|+.||++++.|+.+|.++ ....+
T Consensus        58 --------------------------------erfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey-~k~~v  104 (192)
T KOG0083|consen   58 --------------------------------ERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEY-AKEAV  104 (192)
T ss_pred             --------------------------------HHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHH-HHhhH
Confidence                                            999999999999999999999999999999999999999997 56788


Q ss_pred             CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHH
Q psy1524         224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF  303 (592)
Q Consensus       224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf  303 (592)
                      .+.++|||||+...                               |.|..++++.+++ ...++|+|+|||+|.||+-.|
T Consensus       105 ~l~llgnk~d~a~e-------------------------------r~v~~ddg~kla~-~y~ipfmetsaktg~nvd~af  152 (192)
T KOG0083|consen  105 ALMLLGNKCDLAHE-------------------------------RAVKRDDGEKLAE-AYGIPFMETSAKTGFNVDLAF  152 (192)
T ss_pred             hHhhhccccccchh-------------------------------hccccchHHHHHH-HHCCCceeccccccccHhHHH
Confidence            99999999999877                               7888899999988 788999999999999999999


Q ss_pred             HHHHHHHHHh
Q psy1524         304 KELLVQAKVK  313 (592)
Q Consensus       304 ~~Li~~i~~~  313 (592)
                      ..|.+.+.+.
T Consensus       153 ~~ia~~l~k~  162 (192)
T KOG0083|consen  153 LAIAEELKKL  162 (192)
T ss_pred             HHHHHHHHHh
Confidence            9999998654

>cd04123 Rab21 Rab21 subfamily

Probab=99.93  E-value=1.5e-24  Score=201.83  Aligned_cols=160  Identities=29%  Similarity=0.494  Sum_probs=136.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +||+|+|++|||||||+++|+++.+...+.+++. +.....+.+.+..+.+.+|||+|+                     
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~---------------------   59 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQ---------------------   59 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCch---------------------
Confidence            5899999999999999999999988877777775 455666777788889999999998                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        +.+..++..++.++|++++|||++++++++.+..|+..+.... ..
T Consensus        60 ----------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~  104 (162)
T cd04123          60 ----------------------------------ERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMR-GN  104 (162)
T ss_pred             ----------------------------------HHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CC
Confidence                                              7778888888999999999999999999999999999887763 34


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|+++|+||+|+...                               +.+..++...+++ .....+++|||++|.|+++
T Consensus       105 ~~piiiv~nK~D~~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~s~~~~~gi~~  152 (162)
T cd04123         105 NISLVIVGNKIDLERQ-------------------------------RVVSKSEAEEYAK-SVGAKHFETSAKTGKGIEE  152 (162)
T ss_pred             CCeEEEEEECcccccc-------------------------------cCCCHHHHHHHHH-HcCCEEEEEeCCCCCCHHH
Confidence            7999999999998754                               4556666666665 4567799999999999999


Q ss_pred             HHHHHHHHH
Q psy1524         302 VFKELLVQA  310 (592)
Q Consensus       302 Lf~~Li~~i  310 (592)
                      +|+++++.+
T Consensus       153 ~~~~l~~~~  161 (162)
T cd04123         153 LFLSLAKRM  161 (162)
T ss_pred             HHHHHHHHh
Confidence            999998865

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01863 Rab18 Rab18 subfamily

Probab=99.93  E-value=1.5e-24  Score=202.99  Aligned_cols=159  Identities=27%  Similarity=0.473  Sum_probs=137.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +||+++|++|||||||+++|++..+...+.++++ +.....+.+++..+.+.||||+|+                     
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~---------------------   59 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQ---------------------   59 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCc---------------------
Confidence            5899999999999999999999988877778877 555566778888899999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        +++..+...+++.+|++|+|||++++.+|+.+..|+..+.......
T Consensus        60 ----------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~  105 (161)
T cd01863          60 ----------------------------------ERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNN  105 (161)
T ss_pred             ----------------------------------hhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCC
Confidence                                              6777777888999999999999999999999999999888875567


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      +.|+++|+||+|+...                                .+..++...+++ ...++++++||++|.|+++
T Consensus       106 ~~~~~iv~nK~D~~~~--------------------------------~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~  152 (161)
T cd01863         106 DIVKMLVGNKIDKENR--------------------------------EVTREEGLKFAR-KHNMLFIETSAKTRDGVQQ  152 (161)
T ss_pred             CCcEEEEEECCccccc--------------------------------ccCHHHHHHHHH-HcCCEEEEEecCCCCCHHH
Confidence            8999999999999732                                345566777776 4578899999999999999


Q ss_pred             HHHHHHHH
Q psy1524         302 VFKELLVQ  309 (592)
Q Consensus       302 Lf~~Li~~  309 (592)
                      +|+.+++.
T Consensus       153 ~~~~~~~~  160 (161)
T cd01863         153 AFEELVEK  160 (161)
T ss_pred             HHHHHHHh
Confidence            99998875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04129 Rho2 Rho2 subfamily

Probab=99.93  E-value=1.7e-24  Score=209.67  Aligned_cols=178  Identities=26%  Similarity=0.428  Sum_probs=141.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      .||+|+|++|||||||+++|..+.+.+.+.+|+.+.+...+.+++..+.+.+|||+|+                      
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~----------------------   59 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQ----------------------   59 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCC----------------------
Confidence            5999999999999999999998888888888887766677788888899999999998                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhhcCC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETKAST  221 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~~~~  221 (592)
                                                       +.+..+...++..+|++|+|||+++.++|+.+. .|+..+...  ..
T Consensus        60 ---------------------------------~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~--~~  104 (187)
T cd04129          60 ---------------------------------EEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRY--CP  104 (187)
T ss_pred             ---------------------------------hhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CC
Confidence                                             444444455678999999999999999999997 488877654  35


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|+|+||||+|+.......                     ......+.++.+++..+++......||+|||++|.||++
T Consensus       105 ~~piilvgnK~Dl~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  163 (187)
T cd04129         105 NVPVILVGLKKDLRQDAVAK---------------------EEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDD  163 (187)
T ss_pred             CCCEEEEeeChhhhhCcccc---------------------cccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHH
Confidence            79999999999986431000                     001123667778888888755456899999999999999


Q ss_pred             HHHHHHHHHHHhcccCh
Q psy1524         302 VFKELLVQAKVKYNLSP  318 (592)
Q Consensus       302 Lf~~Li~~i~~~~~~~~  318 (592)
                      +|+.+++.+...++..|
T Consensus       164 ~f~~l~~~~~~~~~~~~  180 (187)
T cd04129         164 VFEAATRAALLVRKSEP  180 (187)
T ss_pred             HHHHHHHHHhcccCccc
Confidence            99999998876655443

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0393|consensus

Probab=99.92  E-value=1.1e-25  Score=218.55  Aligned_cols=180  Identities=26%  Similarity=0.452  Sum_probs=156.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ...+|++|||+.+||||+|+..|..+.|.+.|.||+-|.+...+.++ ++.+.+.+|||+|+                  
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGq------------------   63 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQ------------------   63 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCC------------------
Confidence            35689999999999999999999999999999999999999999995 99999999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHH-HHHHHHHh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-IRDHIFET  217 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~-~l~~L~~~  217 (592)
                                                           |+|..++...|.++|++|+||+++++.||+++.. |+.++..+
T Consensus        64 -------------------------------------edYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~  106 (198)
T KOG0393|consen   64 -------------------------------------EDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHH  106 (198)
T ss_pred             -------------------------------------cccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhh
Confidence                                                 7888888889999999999999999999999755 99988875


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                        +++.|+||||+|.||.++...+        ..+.           ......|+.+++..+++......|+||||++..
T Consensus       107 --cp~vpiiLVGtk~DLr~d~~~~--------~~l~-----------~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~  165 (198)
T KOG0393|consen  107 --CPNVPIILVGTKADLRDDPSTL--------EKLQ-----------RQGLEPVTYEQGLELAKEIGAVKYLECSALTQK  165 (198)
T ss_pred             --CCCCCEEEEeehHHhhhCHHHH--------HHHH-----------hccCCcccHHHHHHHHHHhCcceeeeehhhhhC
Confidence              5899999999999999652110        0111           113367899999999998888999999999999


Q ss_pred             cHHHHHHHHHHHHHHhcc
Q psy1524         298 NITQVFKELLVQAKVKYN  315 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~~~  315 (592)
                      |+.++|+..++.++...+
T Consensus       166 ~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  166 GVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             CcHHHHHHHHHHHhcccc
Confidence            999999999999866543

>cd04114 Rab30 Rab30 subfamily

Probab=99.92  E-value=4.6e-24  Score=201.32  Aligned_cols=163  Identities=30%  Similarity=0.463  Sum_probs=139.3

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ...+||+++|++|||||||+++|+.+.+...+.+|++ +.....+.+++..+.+.+||++|+                  
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~------------------   66 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ------------------   66 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc------------------
Confidence            4568999999999999999999998888877777776 677777888998899999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           +.|..+...++..+|++|+|||+++..+|+.+..|+..+... 
T Consensus        67 -------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~-  108 (169)
T cd04114          67 -------------------------------------ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY-  108 (169)
T ss_pred             -------------------------------------HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-
Confidence                                                 677888888999999999999999999999999999888765 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      ...++|+++|+||+|+...                               +.+..+....+.+ .....+++|||++|.|
T Consensus       109 ~~~~~~~i~v~NK~D~~~~-------------------------------~~i~~~~~~~~~~-~~~~~~~~~Sa~~~~g  156 (169)
T cd04114         109 ANNKVITILVGNKIDLAER-------------------------------REVSQQRAEEFSD-AQDMYYLETSAKESDN  156 (169)
T ss_pred             CCCCCeEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCCeEEEeeCCCCCC
Confidence            3457999999999998755                               4556566666665 3447799999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQA  310 (592)
Q Consensus       299 VeeLf~~Li~~i  310 (592)
                      ++++|+.+++.+
T Consensus       157 v~~l~~~i~~~~  168 (169)
T cd04114         157 VEKLFLDLACRL  168 (169)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00876 Ras Ras family

Probab=99.92  E-value=3.5e-24  Score=198.87  Aligned_cols=159  Identities=47%  Similarity=0.743  Sum_probs=140.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV  143 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~  143 (592)
                      ||+|+|++|||||||+++|++..+...+.+++.+.+...+.+++..+.+++||++|+                       
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----------------------   57 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQ-----------------------   57 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCCh-----------------------
Confidence            699999999999999999999889888999988877888888888899999999999                       


Q ss_pred             HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524         144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV  223 (592)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~  223 (592)
                                                      +.+..+...++..+|++++|||++++.+++++..|+..+........+
T Consensus        58 --------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  105 (160)
T cd00876          58 --------------------------------EEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDI  105 (160)
T ss_pred             --------------------------------HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence                                            667788888899999999999999999999999999988887544689


Q ss_pred             CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHH
Q psy1524         224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF  303 (592)
Q Consensus       224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf  303 (592)
                      |+++|+||+|+...                               +.++.+++..+++ ....+++++||+++.||+++|
T Consensus       106 p~ivv~nK~D~~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i~~l~  153 (160)
T cd00876         106 PIVLVGNKCDLENE-------------------------------RQVSKEEGKALAK-EWGCPFIETSAKDNINIDEVF  153 (160)
T ss_pred             cEEEEEECCccccc-------------------------------ceecHHHHHHHHH-HcCCcEEEeccCCCCCHHHHH
Confidence            99999999999764                               4556677777776 344789999999999999999


Q ss_pred             HHHHHH
Q psy1524         304 KELLVQ  309 (592)
Q Consensus       304 ~~Li~~  309 (592)
                      +.|++.
T Consensus       154 ~~l~~~  159 (160)
T cd00876         154 KLLVRE  159 (160)
T ss_pred             HHHHhh
Confidence            999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.92  E-value=6.3e-24  Score=203.12  Aligned_cols=165  Identities=32%  Similarity=0.572  Sum_probs=142.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      .||+|+|++|||||||+++|....+...+.+|+.+.+...+.+++..+.+++|||+|+                      
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~----------------------   59 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQ----------------------   59 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCCh----------------------
Confidence            5999999999999999999999999888888888766777888888889999999999                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA  222 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~  222 (592)
                                                       ++|..+...++..+|++|+|||+++..+|+.+..|+..+.+.....+
T Consensus        60 ---------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  106 (180)
T cd04137          60 ---------------------------------DEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKES  106 (180)
T ss_pred             ---------------------------------HhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence                                             77888888899999999999999999999999999998887655567


Q ss_pred             CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHH
Q psy1524         223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV  302 (592)
Q Consensus       223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeL  302 (592)
                      .|+|+|+||+|+...                               +.+..++...+++ ....+++++||++|.|++++
T Consensus       107 ~p~ilv~NK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~l  154 (180)
T cd04137         107 VPIVLVGNKSDLHTQ-------------------------------RQVSTEEGKELAE-SWGAAFLESSARENENVEEA  154 (180)
T ss_pred             CCEEEEEEchhhhhc-------------------------------CccCHHHHHHHHH-HcCCeEEEEeCCCCCCHHHH
Confidence            899999999998654                               4455555666655 45578999999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy1524         303 FKELLVQAKVKY  314 (592)
Q Consensus       303 f~~Li~~i~~~~  314 (592)
                      |.++++.+....
T Consensus       155 ~~~l~~~~~~~~  166 (180)
T cd04137         155 FELLIEEIEKVE  166 (180)
T ss_pred             HHHHHHHHHHhc
Confidence            999999886543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04149 Arf6 Arf6 subfamily

Probab=99.92  E-value=2.9e-24  Score=204.91  Aligned_cols=156  Identities=15%  Similarity=0.227  Sum_probs=122.5

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ..+||+|+|++|||||||+++|..+.+.. +.+|++... ..+..  ..+.+++|||+|+                    
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~-~~~~~--~~~~~~l~Dt~G~--------------------   63 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV-ETVTY--KNVKFNVWDVGGQ--------------------   63 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccce-EEEEE--CCEEEEEEECCCC--------------------
Confidence            45899999999999999999999887753 567776322 22333  4578889999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         +++..++..++.+||++|+|||++++.+|+++..|+..+......
T Consensus        64 -----------------------------------~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~  108 (168)
T cd04149          64 -----------------------------------DKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREM  108 (168)
T ss_pred             -----------------------------------HHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhh
Confidence                                               788888999999999999999999999999998888777653333


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh----cCCCeEEEcccCCC
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV----DWENGFVEASAKDN  296 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~----~~~~~~~EvSAktg  296 (592)
                      .++|++||+||+|+.+.                                 ++.+++......    .....+++|||++|
T Consensus       109 ~~~piilv~NK~Dl~~~---------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g  155 (168)
T cd04149         109 RDALLLVFANKQDLPDA---------------------------------MKPHEIQEKLGLTRIRDRNWYVQPSCATSG  155 (168)
T ss_pred             cCCcEEEEEECcCCccC---------------------------------CCHHHHHHHcCCCccCCCcEEEEEeeCCCC
Confidence            57899999999998642                                 234455544321    12236899999999


Q ss_pred             ccHHHHHHHHHH
Q psy1524         297 TNITQVFKELLV  308 (592)
Q Consensus       297 ~gVeeLf~~Li~  308 (592)
                      .||+++|++|.+
T Consensus       156 ~gv~~~~~~l~~  167 (168)
T cd04149         156 DGLYEGLTWLSS  167 (168)
T ss_pred             CChHHHHHHHhc
Confidence            999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.92  E-value=8.7e-24  Score=204.24  Aligned_cols=168  Identities=17%  Similarity=0.260  Sum_probs=131.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEee-CCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSM-NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~v-dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      .+||+++|++|||||||+++|+.+.+... .+|++ +.....+.+ ++..+.+++|||+|+                   
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~-------------------   62 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ-------------------   62 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCc-------------------
Confidence            48999999999999999999998888754 56665 333444444 446788999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +++..++..+++++|++|+|||+++..+++.+..|+..+.....
T Consensus        63 ------------------------------------~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~  106 (183)
T cd04152          63 ------------------------------------EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE  106 (183)
T ss_pred             ------------------------------------HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh
Confidence                                                78888999999999999999999999999999888888776544


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh-----cCCCeEEEcccC
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV-----DWENGFVEASAK  294 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~-----~~~~~~~EvSAk  294 (592)
                      ..++|+++|+||+|+...                                 +..++...+...     .....+++|||+
T Consensus       107 ~~~~p~iiv~NK~D~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  153 (183)
T cd04152         107 NQGVPVLVLANKQDLPNA---------------------------------LSVSEVEKLLALHELSASTPWHVQPACAI  153 (183)
T ss_pred             cCCCcEEEEEECcCcccc---------------------------------CCHHHHHHHhCccccCCCCceEEEEeecc
Confidence            467999999999998643                                 122333333221     112458899999


Q ss_pred             CCccHHHHHHHHHHHHHHhcccCh
Q psy1524         295 DNTNITQVFKELLVQAKVKYNLSP  318 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i~~~~~~~~  318 (592)
                      +|.||+++|+.|++.+.......+
T Consensus       154 ~~~gi~~l~~~l~~~l~~~~~~~~  177 (183)
T cd04152         154 IGEGLQEGLEKLYEMILKRRKMLR  177 (183)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999976555443

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd00157 Rho Rho (Ras homology) family

Probab=99.92  E-value=7.9e-24  Score=199.55  Aligned_cols=169  Identities=26%  Similarity=0.492  Sum_probs=135.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      +||+|+|++|||||||+++|+++.+...+.+++.+.+...+.+++..+.+++|||+|+                      
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~----------------------   58 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQ----------------------   58 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCc----------------------
Confidence            5999999999999999999999999888888888777777888999999999999999                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHH-HHHHHHHhhcCC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-IRDHIFETKAST  221 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~-~l~~L~~~~~~~  221 (592)
                                                       +++..+...+++.+|++++|||++++.+|..+.. |+..+...  ..
T Consensus        59 ---------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~  103 (171)
T cd00157          59 ---------------------------------EEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHY--CP  103 (171)
T ss_pred             ---------------------------------ccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CC
Confidence                                             5555666667889999999999999999988765 55555553  34


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      +.|+++|+||+|+..........                    ......+..+++..+........|+++||++|.|+++
T Consensus       104 ~~p~ivv~nK~Dl~~~~~~~~~~--------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  163 (171)
T cd00157         104 NVPIILVGTKIDLRDDENTLKKL--------------------EKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKE  163 (171)
T ss_pred             CCCEEEEEccHHhhhchhhhhhc--------------------ccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHH
Confidence            89999999999998662211000                    1112456677778777755444899999999999999


Q ss_pred             HHHHHHH
Q psy1524         302 VFKELLV  308 (592)
Q Consensus       302 Lf~~Li~  308 (592)
                      +|+.+++
T Consensus       164 l~~~i~~  170 (171)
T cd00157         164 VFEEAIR  170 (171)
T ss_pred             HHHHHhh
Confidence            9999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04158 ARD1 ARD1 subfamily

Probab=99.92  E-value=6.1e-24  Score=202.21  Aligned_cols=158  Identities=16%  Similarity=0.203  Sum_probs=125.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV  143 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~  143 (592)
                      ||+++|++|||||||+++|+++.+.. +.+|++..+. .+..+  .+.+++|||+|+                       
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~~~~--~~~i~l~Dt~G~-----------------------   53 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TVEYK--NLKFTIWDVGGK-----------------------   53 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EEEEC--CEEEEEEECCCC-----------------------
Confidence            68999999999999999999887764 6777763322 33333  477888999999                       


Q ss_pred             HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524         144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV  223 (592)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~  223 (592)
                                                      +++..++..+++++|++|+|||++++.+|+++..|+..+.+.....+.
T Consensus        54 --------------------------------~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~  101 (169)
T cd04158          54 --------------------------------HKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDA  101 (169)
T ss_pred             --------------------------------hhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCC
Confidence                                            677788888999999999999999999999999999888765334568


Q ss_pred             CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcC-----CCeEEEcccCCCcc
Q psy1524         224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDW-----ENGFVEASAKDNTN  298 (592)
Q Consensus       224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~-----~~~~~EvSAktg~g  298 (592)
                      |++||+||+|+...                                 ++.+++..+++...     ...+++|||++|.|
T Consensus       102 piilv~NK~Dl~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  148 (169)
T cd04158         102 LLLIFANKQDVAGA---------------------------------LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMG  148 (169)
T ss_pred             CEEEEEeCcCcccC---------------------------------CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCC
Confidence            99999999998532                                 44555655543221     22588999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy1524         299 ITQVFKELLVQAKVK  313 (592)
Q Consensus       299 VeeLf~~Li~~i~~~  313 (592)
                      |+++|+++++.+...
T Consensus       149 v~~~f~~l~~~~~~~  163 (169)
T cd04158         149 LYEGLDWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999887544

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.91  E-value=1.3e-23  Score=203.30  Aligned_cols=161  Identities=13%  Similarity=0.178  Sum_probs=123.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+++|++|||||||+++|..+.+. .+.+|++... ..+..  ..+.++||||+|+                   
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~-~~~~~--~~~~~~i~D~~Gq-------------------   71 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEY--KNISFTVWDVGGQ-------------------   71 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE-EEEEE--CCEEEEEEECCCC-------------------
Confidence            34589999999999999999999988876 4677877332 23333  3477888999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          ++++.++..+++++|++|+|||++++++++++..++..+.....
T Consensus        72 ------------------------------------~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~  115 (181)
T PLN00223         72 ------------------------------------DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE  115 (181)
T ss_pred             ------------------------------------HHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHh
Confidence                                                88999999999999999999999999999998887776654323


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc----CCCeEEEcccCC
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD----WENGFVEASAKD  295 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~----~~~~~~EvSAkt  295 (592)
                      ..++|++||+||+|+.+.                                 +..++........    ....+++|||++
T Consensus       116 ~~~~piilv~NK~Dl~~~---------------------------------~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~  162 (181)
T PLN00223        116 LRDAVLLVFANKQDLPNA---------------------------------MNAAEITDKLGLHSLRQRHWYIQSTCATS  162 (181)
T ss_pred             hCCCCEEEEEECCCCCCC---------------------------------CCHHHHHHHhCccccCCCceEEEeccCCC
Confidence            357899999999998653                                 1222322222111    112366899999


Q ss_pred             CccHHHHHHHHHHHHHH
Q psy1524         296 NTNITQVFKELLVQAKV  312 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~~  312 (592)
                      |+||+++|++|++.+..
T Consensus       163 g~gv~e~~~~l~~~~~~  179 (181)
T PLN00223        163 GEGLYEGLDWLSNNIAN  179 (181)
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999988754

>cd01893 Miro1 Miro1 subfamily

Probab=99.91  E-value=1.7e-23  Score=198.25  Aligned_cols=162  Identities=29%  Similarity=0.347  Sum_probs=122.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      +||+|+|++|||||||+++|..+.|...+..+. +.++....+++..+.+++|||+|.                      
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~----------------------   57 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEITIPADVTPERVPTTIVDTSSR----------------------   57 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cceEeeeeecCCeEEEEEEeCCCc----------------------
Confidence            489999999999999999999999976654443 334455567778899999999998                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhhcCC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETKAST  221 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~~~~  221 (592)
                                                       +.+......++..+|++++|||++++.+|+.+. .|+..+...  ..
T Consensus        58 ---------------------------------~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~--~~  102 (166)
T cd01893          58 ---------------------------------PQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRL--GV  102 (166)
T ss_pred             ---------------------------------hhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CC
Confidence                                             555555666789999999999999999999986 466666654  34


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCC-CeEEEcccCCCccHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWE-NGFVEASAKDNTNIT  300 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~-~~~~EvSAktg~gVe  300 (592)
                      ++|+++|+||+|+.+...                             .....++...++..... ..+++|||++|.||+
T Consensus       103 ~~pviiv~nK~Dl~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  153 (166)
T cd01893         103 KVPIILVGNKSDLRDGSS-----------------------------QAGLEEEMLPIMNEFREIETCVECSAKTLINVS  153 (166)
T ss_pred             CCCEEEEEEchhcccccc-----------------------------hhHHHHHHHHHHHHHhcccEEEEeccccccCHH
Confidence            899999999999976510                             00012222233222222 379999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         301 QVFKELLVQAK  311 (592)
Q Consensus       301 eLf~~Li~~i~  311 (592)
                      ++|+.+.+.+.
T Consensus       154 ~lf~~~~~~~~  164 (166)
T cd01893         154 EVFYYAQKAVL  164 (166)
T ss_pred             HHHHHHHHHhc
Confidence            99999988774

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.91  E-value=1.2e-23  Score=198.65  Aligned_cols=154  Identities=14%  Similarity=0.201  Sum_probs=118.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      +||+++|++|||||||+++|..+.+. .+.+|++... ..+..  ..+.+.||||+|+                      
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~-~~~~~--~~~~~~l~D~~G~----------------------   54 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEY--KNISFTVWDVGGQ----------------------   54 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcce-EEEEE--CCEEEEEEECCCC----------------------
Confidence            48999999999999999999988887 4678876332 23333  3577888999999                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA  222 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~  222 (592)
                                                       +++..++..++++||++|+|||++++.+|+++..++..+.......+
T Consensus        55 ---------------------------------~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~  101 (159)
T cd04150          55 ---------------------------------DKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRD  101 (159)
T ss_pred             ---------------------------------HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcC
Confidence                                             78888999999999999999999999999999988877754333356


Q ss_pred             CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHH-HHHHHh---hcCCCeEEEcccCCCcc
Q psy1524         223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDT-TESVVQ---VDWENGFVEASAKDNTN  298 (592)
Q Consensus       223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee-~~~la~---~~~~~~~~EvSAktg~g  298 (592)
                      +|++||+||+|+.+.                                 +..++ ...+..   ......+++|||++|.|
T Consensus       102 ~piilv~NK~Dl~~~---------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~g  148 (159)
T cd04150         102 AVLLVFANKQDLPNA---------------------------------MSAAEVTDKLGLHSLRNRNWYIQATCATSGDG  148 (159)
T ss_pred             CCEEEEEECCCCCCC---------------------------------CCHHHHHHHhCccccCCCCEEEEEeeCCCCCC
Confidence            899999999998643                                 11111 122211   01233578999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         299 ITQVFKELLV  308 (592)
Q Consensus       299 VeeLf~~Li~  308 (592)
                      |+++|++|.+
T Consensus       149 v~~~~~~l~~  158 (159)
T cd04150         149 LYEGLDWLSN  158 (159)
T ss_pred             HHHHHHHHhc
Confidence            9999998864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd00154 Rab Rab family

Probab=99.91  E-value=3.4e-23  Score=190.44  Aligned_cols=157  Identities=33%  Similarity=0.558  Sum_probs=135.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +||+++|.+|||||||+++|.++.+...+.+|++ +.....+.+++..+.+.+||++|+                     
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~---------------------   59 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQ---------------------   59 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCCh---------------------
Confidence            5899999999999999999999999887777777 566677778888889999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        +.+..+...+++++|++|+|||++++++++.+..|+..+... ...
T Consensus        60 ----------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~  104 (159)
T cd00154          60 ----------------------------------ERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEY-APE  104 (159)
T ss_pred             ----------------------------------HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCC
Confidence                                              777788888999999999999999999999999999888776 335


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ..|+++|+||+|+..+                               ..+..++...++. ....+++++||+++.|+++
T Consensus       105 ~~p~ivv~nK~D~~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~~  152 (159)
T cd00154         105 NIPIILVGNKIDLEDQ-------------------------------RQVSTEEAQQFAK-ENGLLFFETSAKTGENVEE  152 (159)
T ss_pred             CCcEEEEEEccccccc-------------------------------ccccHHHHHHHHH-HcCCeEEEEecCCCCCHHH
Confidence            7999999999999733                               3456677777776 4678899999999999999


Q ss_pred             HHHHHH
Q psy1524         302 VFKELL  307 (592)
Q Consensus       302 Lf~~Li  307 (592)
                      +|..|+
T Consensus       153 ~~~~i~  158 (159)
T cd00154         153 LFQSLA  158 (159)
T ss_pred             HHHHHh
Confidence            999886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.91  E-value=2.4e-23  Score=199.72  Aligned_cols=158  Identities=15%  Similarity=0.207  Sum_probs=121.7

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ..+||+++|++|||||||+++|..+.+. .+.+|++..+. .+..+  .+.++||||+|+                    
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~~--~~~l~l~D~~G~--------------------   67 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTYK--NISFTVWDVGGQ--------------------   67 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEEC--CEEEEEEECCCC--------------------
Confidence            4589999999999999999999988775 46778773222 23333  477888999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         +++..++..++++||++|+|||++++.+++++..++..+......
T Consensus        68 -----------------------------------~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~  112 (175)
T smart00177       68 -----------------------------------DKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDEL  112 (175)
T ss_pred             -----------------------------------hhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhh
Confidence                                               788889999999999999999999999999999888877653333


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh----cCCCeEEEcccCCC
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV----DWENGFVEASAKDN  296 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~----~~~~~~~EvSAktg  296 (592)
                      .++|++||+||+|+.+.                                 .+.++.......    .....++++||++|
T Consensus       113 ~~~piilv~NK~Dl~~~---------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g  159 (175)
T smart00177      113 RDAVILVFANKQDLPDA---------------------------------MKAAEITEKLGLHSIRDRNWYIQPTCATSG  159 (175)
T ss_pred             cCCcEEEEEeCcCcccC---------------------------------CCHHHHHHHhCccccCCCcEEEEEeeCCCC
Confidence            57899999999998653                                 111221111110    12334778999999


Q ss_pred             ccHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQA  310 (592)
Q Consensus       297 ~gVeeLf~~Li~~i  310 (592)
                      .||+++|++|.+.+
T Consensus       160 ~gv~e~~~~l~~~~  173 (175)
T smart00177      160 DGLYEGLTWLSNNL  173 (175)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998765

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04154 Arl2 Arl2 subfamily

Probab=99.91  E-value=3.3e-23  Score=197.58  Aligned_cols=157  Identities=17%  Similarity=0.297  Sum_probs=123.0

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      +..+||+++|++|||||||+++|++..+ ..+.+|++ +....+.+++  +.+.+|||+|+                   
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g-~~~~~~~~~~--~~l~l~D~~G~-------------------   68 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLG-FQIKTLEYEG--YKLNIWDVGGQ-------------------   68 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccc-cceEEEEECC--EEEEEEECCCC-------------------
Confidence            4568999999999999999999997754 45566765 2334455554  67788999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +.+..++..+++++|++++|||++++.+|..+..|+..+.....
T Consensus        69 ------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  112 (173)
T cd04154          69 ------------------------------------KTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEER  112 (173)
T ss_pred             ------------------------------------HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChh
Confidence                                                77788888899999999999999999999999888887765433


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh----cCCCeEEEcccCC
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV----DWENGFVEASAKD  295 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~----~~~~~~~EvSAkt  295 (592)
                      ..++|+++|+||+|+...                                 ...+++..+...    ....++++|||++
T Consensus       113 ~~~~p~iiv~nK~Dl~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (173)
T cd04154         113 LAGATLLILANKQDLPGA---------------------------------LSEEEIREALELDKISSHHWRIQPCSAVT  159 (173)
T ss_pred             hcCCCEEEEEECcccccC---------------------------------CCHHHHHHHhCccccCCCceEEEeccCCC
Confidence            468999999999998653                                 123334433321    2356799999999


Q ss_pred             CccHHHHHHHHHH
Q psy1524         296 NTNITQVFKELLV  308 (592)
Q Consensus       296 g~gVeeLf~~Li~  308 (592)
                      |.||+++|++++.
T Consensus       160 g~gi~~l~~~l~~  172 (173)
T cd04154         160 GEGLLQGIDWLVD  172 (173)
T ss_pred             CcCHHHHHHHHhc
Confidence            9999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.91  E-value=3.2e-23  Score=200.50  Aligned_cols=161  Identities=14%  Similarity=0.203  Sum_probs=122.5

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ..+||+|+|++|||||||++++..+.+.. +.+|++..+ ..+..  ..+.+++|||+|+                    
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~-~~~~~--~~~~~~l~D~~G~--------------------   71 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV-ETVEY--KNLKFTMWDVGGQ--------------------   71 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce-EEEEE--CCEEEEEEECCCC--------------------
Confidence            35899999999999999999999888864 667776333 23333  4477888999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         +++..++..+++++|++|+|||++++.+|+++..++..+......
T Consensus        72 -----------------------------------~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~  116 (182)
T PTZ00133         72 -----------------------------------DKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDEL  116 (182)
T ss_pred             -----------------------------------HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhh
Confidence                                               788889999999999999999999999999988877766543233


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh----cCCCeEEEcccCCC
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV----DWENGFVEASAKDN  296 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~----~~~~~~~EvSAktg  296 (592)
                      .++|+|||+||+|+.+.                                 +..++.......    .....++++||++|
T Consensus       117 ~~~piilv~NK~Dl~~~---------------------------------~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg  163 (182)
T PTZ00133        117 RDAVLLVFANKQDLPNA---------------------------------MSTTEVTEKLGLHSVRQRNWYIQGCCATTA  163 (182)
T ss_pred             cCCCEEEEEeCCCCCCC---------------------------------CCHHHHHHHhCCCcccCCcEEEEeeeCCCC
Confidence            57899999999998643                                 111221111111    11234679999999


Q ss_pred             ccHHHHHHHHHHHHHHh
Q psy1524         297 TNITQVFKELLVQAKVK  313 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~~~  313 (592)
                      .||+++|++|++.+..+
T Consensus       164 ~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        164 QGLYEGLDWLSANIKKS  180 (182)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999887544

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.90  E-value=1.5e-23  Score=199.05  Aligned_cols=152  Identities=17%  Similarity=0.246  Sum_probs=121.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHH
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVC  144 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~  144 (592)
                      |+|+|++|||||||+++|+++.+...+.+|++...   ..++...+.+.+|||+|+                        
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~------------------------   54 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGS------------------------   54 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCC------------------------
Confidence            89999999999999999999988888888887322   334556688999999999                        


Q ss_pred             HHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCC
Q psy1524         145 LRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVP  224 (592)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~P  224 (592)
                                                     ++|..++..+++++|++|+|||++++.+|..+..|+..+...  ..++|
T Consensus        55 -------------------------------~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~--~~~~p  101 (164)
T cd04162          55 -------------------------------QNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQH--PPDLP  101 (164)
T ss_pred             -------------------------------cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhC--CCCCc
Confidence                                           788889999999999999999999999999999888887653  26899


Q ss_pred             EEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCCh----HHHHHHHhhcCCCeEEEcccCC-----
Q psy1524         225 IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPY----DTTESVVQVDWENGFVEASAKD-----  295 (592)
Q Consensus       225 IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~----ee~~~la~~~~~~~~~EvSAkt-----  295 (592)
                      +++|+||+|+...                               +.++.    ..+..+++ .....+++|||++     
T Consensus       102 iilv~NK~Dl~~~-------------------------------~~~~~i~~~~~~~~~~~-~~~~~~~~~Sa~~~~s~~  149 (164)
T cd04162         102 LVVLANKQDLPAA-------------------------------RSVQEIHKELELEPIAR-GRRWILQGTSLDDDGSPS  149 (164)
T ss_pred             EEEEEeCcCCcCC-------------------------------CCHHHHHHHhCChhhcC-CCceEEEEeeecCCCChh
Confidence            9999999998654                               11110    12233433 3456688888888     


Q ss_pred             -CccHHHHHHHHHH
Q psy1524         296 -NTNITQVFKELLV  308 (592)
Q Consensus       296 -g~gVeeLf~~Li~  308 (592)
                       ++||+++|+.++.
T Consensus       150 ~~~~v~~~~~~~~~  163 (164)
T cd04162         150 RMEAVKDLLSQLIN  163 (164)
T ss_pred             HHHHHHHHHHHHhc
Confidence             9999999998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.90  E-value=3.6e-22  Score=197.68  Aligned_cols=164  Identities=24%  Similarity=0.380  Sum_probs=137.8

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      .....+||+|+|++|||||||+++++.+.+...+.+|++ +.....+..++..+.+++|||+|+                
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~----------------   68 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ----------------   68 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCc----------------
Confidence            446679999999999999999999999999888999988 555666667888999999999998                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             ++|..++..++..++++|+|||+++..||..+..|+..+..
T Consensus        69 ---------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~  109 (215)
T PTZ00132         69 ---------------------------------------EKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVR  109 (215)
T ss_pred             ---------------------------------------hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence                                                   77778888889999999999999999999999999998876


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      .  ..++|+++|+||+|+.+.                                .+..+. ..+++ ..+..++++||++|
T Consensus       110 ~--~~~~~i~lv~nK~Dl~~~--------------------------------~~~~~~-~~~~~-~~~~~~~e~Sa~~~  153 (215)
T PTZ00132        110 V--CENIPIVLVGNKVDVKDR--------------------------------QVKARQ-ITFHR-KKNLQYYDISAKSN  153 (215)
T ss_pred             h--CCCCCEEEEEECccCccc--------------------------------cCCHHH-HHHHH-HcCCEEEEEeCCCC
Confidence            5  357999999999998643                                222222 23444 34568999999999


Q ss_pred             ccHHHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQAKV  312 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~~  312 (592)
                      .||+++|.++++.+..
T Consensus       154 ~~v~~~f~~ia~~l~~  169 (215)
T PTZ00132        154 YNFEKPFLWLARRLTN  169 (215)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999998853

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.89  E-value=2.3e-22  Score=198.49  Aligned_cols=120  Identities=21%  Similarity=0.351  Sum_probs=106.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeC-----CeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMN-----GVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vd-----g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      +||+++|+++||||||+++|+.+.|.+.+.+|++ ++..+.+.++     +..+.++||||+|+                
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~----------------   64 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGS----------------   64 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCc----------------
Confidence            5899999999999999999999999998999998 5555666653     57899999999999                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             ++|..++..+++++|++|+|||++++.||+++..|+.++..
T Consensus        65 ---------------------------------------e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~  105 (202)
T cd04102          65 ---------------------------------------ESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALN  105 (202)
T ss_pred             ---------------------------------------hhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHH
Confidence                                                   88999999999999999999999999999999999999976


Q ss_pred             hh------------------cCCCCCEEEEEeCCCCccc
Q psy1524         217 TK------------------ASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       217 ~~------------------~~~~~PIILVgNK~DL~~~  237 (592)
                      ..                  ...++|+||||||+|+.+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~  144 (202)
T cd04102         106 KDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE  144 (202)
T ss_pred             hhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence            42                  1347899999999999765

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04157 Arl6 Arl6 subfamily

Probab=99.89  E-value=8e-23  Score=190.98  Aligned_cols=154  Identities=18%  Similarity=0.212  Sum_probs=116.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC-CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNT-FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~-f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      +|+++|++|||||||+++|++.. +...+.+|++-.. ..+.  ...+.+++|||+|+                      
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~-~~~~--~~~~~~~l~Dt~G~----------------------   55 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV-ESFE--KGNLSFTAFDMSGQ----------------------   55 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce-EEEE--ECCEEEEEEECCCC----------------------
Confidence            58999999999999999999875 4566777876221 2222  33577888999999                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh--cC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK--AS  220 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~--~~  220 (592)
                                                       +++..++..+++.+|++|+|||++++.+|..+..|+..+....  ..
T Consensus        56 ---------------------------------~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~  102 (162)
T cd04157          56 ---------------------------------GKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKH  102 (162)
T ss_pred             ---------------------------------HhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCccccc
Confidence                                             7888899999999999999999999999998888888776532  12


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh----hcCCCeEEEcccCCC
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ----VDWENGFVEASAKDN  296 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~----~~~~~~~~EvSAktg  296 (592)
                      .++|+++|+||+|+....                                 ..++......    ......+++|||++|
T Consensus       103 ~~~p~iiv~NK~Dl~~~~---------------------------------~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g  149 (162)
T cd04157         103 RRVPILFFANKMDLPDAL---------------------------------TAVKITQLLGLENIKDKPWHIFASNALTG  149 (162)
T ss_pred             CCCCEEEEEeCccccCCC---------------------------------CHHHHHHHhCCccccCceEEEEEeeCCCC
Confidence            579999999999986531                                 1111111111    012345899999999


Q ss_pred             ccHHHHHHHHHH
Q psy1524         297 TNITQVFKELLV  308 (592)
Q Consensus       297 ~gVeeLf~~Li~  308 (592)
                      .||+++|++|.+
T Consensus       150 ~gv~~~~~~l~~  161 (162)
T cd04157         150 EGLDEGVQWLQA  161 (162)
T ss_pred             CchHHHHHHHhc
Confidence            999999999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>KOG4252|consensus

Probab=99.89  E-value=3.4e-24  Score=201.36  Aligned_cols=173  Identities=26%  Similarity=0.390  Sum_probs=158.1

Q ss_pred             CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524          56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG  134 (592)
Q Consensus        56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~  134 (592)
                      +...+..+|++|+|..+|||||+|.|||.+-|..+|..|++ |+..+.+.+++..+.+.+|||+|+              
T Consensus        14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagq--------------   79 (246)
T KOG4252|consen   14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQ--------------   79 (246)
T ss_pred             chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccc--------------
Confidence            44557789999999999999999999999999999999999 888888999988888999999999              


Q ss_pred             CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524         135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI  214 (592)
Q Consensus       135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L  214 (592)
                                                               ++|..+...||++|.+.++||+.+|+.||+.+..|+..+
T Consensus        80 -----------------------------------------eEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv  118 (246)
T KOG4252|consen   80 -----------------------------------------EEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKV  118 (246)
T ss_pred             -----------------------------------------hhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHH
Confidence                                                     999999999999999999999999999999999999998


Q ss_pred             HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524         215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK  294 (592)
Q Consensus       215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk  294 (592)
                      ..  ....+|.|+|-||+||.++                               .++..++++.+++ .....++.+|++
T Consensus       119 ~~--e~~~IPtV~vqNKIDlved-------------------------------s~~~~~evE~lak-~l~~RlyRtSvk  164 (246)
T KOG4252|consen  119 QK--ETERIPTVFVQNKIDLVED-------------------------------SQMDKGEVEGLAK-KLHKRLYRTSVK  164 (246)
T ss_pred             HH--HhccCCeEEeeccchhhHh-------------------------------hhcchHHHHHHHH-Hhhhhhhhhhhh
Confidence            77  4679999999999999988                               5778888998888 667789999999


Q ss_pred             CCccHHHHHHHHHHHHHHhcccC
Q psy1524         295 DNTNITQVFKELLVQAKVKYNLS  317 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i~~~~~~~  317 (592)
                      ...||.++|..+++.+.++...+
T Consensus       165 ed~NV~~vF~YLaeK~~q~~kq~  187 (246)
T KOG4252|consen  165 EDFNVMHVFAYLAEKLTQQKKQS  187 (246)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999987765543

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.88  E-value=6.3e-22  Score=185.06  Aligned_cols=154  Identities=19%  Similarity=0.316  Sum_probs=116.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV  143 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~  143 (592)
                      +|+|+|++|||||||+++|+.+.+.. +.+|++.. ...+.+ +..+.+.+|||+|+                       
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~-~~~~~~-~~~~~l~i~D~~G~-----------------------   54 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFN-VEMLQL-EKHLSLTVWDVGGQ-----------------------   54 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcc-eEEEEe-CCceEEEEEECCCC-----------------------
Confidence            58999999999999999999988864 35666522 223333 34578899999999                       


Q ss_pred             HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524         144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV  223 (592)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~  223 (592)
                                                      +.+..++..++.++|++|+|||++++.++..+..|+..+.......+.
T Consensus        55 --------------------------------~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (160)
T cd04156          55 --------------------------------EKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGV  102 (160)
T ss_pred             --------------------------------HhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCC
Confidence                                            677778888899999999999999999999998888877654333579


Q ss_pred             CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh-----hcCCCeEEEcccCCCcc
Q psy1524         224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ-----VDWENGFVEASAKDNTN  298 (592)
Q Consensus       224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~-----~~~~~~~~EvSAktg~g  298 (592)
                      |+++|+||+|+...                                 ...++......     ......+++|||++|.|
T Consensus       103 piilv~nK~Dl~~~---------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~g  149 (160)
T cd04156         103 PVVLLANKQDLPGA---------------------------------LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEG  149 (160)
T ss_pred             CEEEEEECcccccC---------------------------------cCHHHHHHHcCCcccCCCCcEEEEecccccCCC
Confidence            99999999998643                                 01111111110     01234689999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         299 ITQVFKELLV  308 (592)
Q Consensus       299 VeeLf~~Li~  308 (592)
                      |+++|+.|.+
T Consensus       150 v~~~~~~i~~  159 (160)
T cd04156         150 LAEAFRKLAS  159 (160)
T ss_pred             hHHHHHHHhc
Confidence            9999998864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.88  E-value=3.2e-22  Score=190.40  Aligned_cols=159  Identities=18%  Similarity=0.279  Sum_probs=120.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV  143 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~  143 (592)
                      +|+++|++|||||||+++|++. +...+.+|++.. ...+..+  .+.+++|||+|+                       
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~--~~~~~i~D~~G~-----------------------   53 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRLD--KYEVCIFDLGGG-----------------------   53 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEEC--CEEEEEEECCCc-----------------------
Confidence            4899999999999999999976 777788888743 3344444  477788999999                       


Q ss_pred             HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524         144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV  223 (592)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~  223 (592)
                                                      ++++.++..+++++|++|+|||+++..+|+.+..|+..+.......++
T Consensus        54 --------------------------------~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~  101 (167)
T cd04161          54 --------------------------------ANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGK  101 (167)
T ss_pred             --------------------------------HHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCC
Confidence                                            778889999999999999999999999999999998888764334578


Q ss_pred             CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh-cCCCeEEEcccCCC------
Q psy1524         224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV-DWENGFVEASAKDN------  296 (592)
Q Consensus       224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~-~~~~~~~EvSAktg------  296 (592)
                      |++||+||+|+.......                           ..+.......+++. .....+++|||++|      
T Consensus       102 piliv~NK~Dl~~~~~~~---------------------------~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~  154 (167)
T cd04161         102 PILVLANKQDKKNALLGA---------------------------DVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKID  154 (167)
T ss_pred             cEEEEEeCCCCcCCCCHH---------------------------HHHHhcCcccccCCCCceEEEEEeEceeCCCCccc
Confidence            999999999997641000                           00000111122221 12346788999998      


Q ss_pred             ccHHHHHHHHHH
Q psy1524         297 TNITQVFKELLV  308 (592)
Q Consensus       297 ~gVeeLf~~Li~  308 (592)
                      .||++.|++|+.
T Consensus       155 ~g~~~~~~wl~~  166 (167)
T cd04161         155 PSIVEGLRWLLA  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            899999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.88  E-value=1.4e-21  Score=187.13  Aligned_cols=155  Identities=18%  Similarity=0.226  Sum_probs=119.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      .+||+++|++|||||||+++|+.+.+.. +.+|++..+ ..+.+++  +.+.+|||+|+                     
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~l~D~~G~---------------------   69 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV-EEIVYKN--IRFLMWDIGGQ---------------------   69 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce-EEEEECC--eEEEEEECCCC---------------------
Confidence            4799999999999999999999888875 466766433 2344454  67778999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        +.+..++..+++++|++|+|||++++.+|..+..++..+.......
T Consensus        70 ----------------------------------~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~  115 (174)
T cd04153          70 ----------------------------------ESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLR  115 (174)
T ss_pred             ----------------------------------HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhc
Confidence                                              7788888889999999999999999999988888777775543345


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHH-HHHHHh---hcCCCeEEEcccCCCc
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDT-TESVVQ---VDWENGFVEASAKDNT  297 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee-~~~la~---~~~~~~~~EvSAktg~  297 (592)
                      ++|+++|+||+|+...                                 ++.++ ...+..   ......+++|||++|.
T Consensus       116 ~~p~viv~NK~Dl~~~---------------------------------~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~  162 (174)
T cd04153         116 KAVLLVLANKQDLKGA---------------------------------MTPAEISESLGLTSIRDHTWHIQGCCALTGE  162 (174)
T ss_pred             CCCEEEEEECCCCCCC---------------------------------CCHHHHHHHhCcccccCCceEEEecccCCCC
Confidence            7999999999998643                                 11222 122210   1234568999999999


Q ss_pred             cHHHHHHHHHH
Q psy1524         298 NITQVFKELLV  308 (592)
Q Consensus       298 gVeeLf~~Li~  308 (592)
                      ||+++|++|.+
T Consensus       163 gi~e~~~~l~~  173 (174)
T cd04153         163 GLPEGLDWIAS  173 (174)
T ss_pred             CHHHHHHHHhc
Confidence            99999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd00879 Sar1 Sar1 subfamily

Probab=99.88  E-value=1.6e-21  Score=188.33  Aligned_cols=158  Identities=17%  Similarity=0.316  Sum_probs=122.9

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      .+.+||+|+|++|||||||+++|+++.+. .+.+|... ....+.+++  +.+.+|||+|+                   
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~-~~~~i~~~~--~~~~l~D~~G~-------------------   73 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP-TSEELTIGN--IKFKTFDLGGH-------------------   73 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc-ceEEEEECC--EEEEEEECCCC-------------------
Confidence            34689999999999999999999988774 46666653 234556665  56677999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +.+..++..++..+|++++|+|+++..+|.....++..+.....
T Consensus        74 ------------------------------------~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~  117 (190)
T cd00879          74 ------------------------------------EQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEE  117 (190)
T ss_pred             ------------------------------------HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCcc
Confidence                                                66777888889999999999999999999988888888776544


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh---------------cC
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV---------------DW  284 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~---------------~~  284 (592)
                      ..+.|+++|+||+|+...                                 ++.++...+...               ..
T Consensus       118 ~~~~pvivv~NK~Dl~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (190)
T cd00879         118 LANVPFLILGNKIDLPGA---------------------------------VSEEELRQALGLYGTTTGKGVSLKVSGIR  164 (190)
T ss_pred             ccCCCEEEEEeCCCCCCC---------------------------------cCHHHHHHHhCcccccccccccccccCce
Confidence            467999999999998632                                 223333333321               12


Q ss_pred             CCeEEEcccCCCccHHHHHHHHHHH
Q psy1524         285 ENGFVEASAKDNTNITQVFKELLVQ  309 (592)
Q Consensus       285 ~~~~~EvSAktg~gVeeLf~~Li~~  309 (592)
                      ...+++|||++|+||+++|+++++.
T Consensus       165 ~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         165 PIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             eEEEEEeEecCCCChHHHHHHHHhh
Confidence            3468999999999999999999865

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04151 Arl1 Arl1 subfamily

Probab=99.88  E-value=9.7e-22  Score=184.30  Aligned_cols=153  Identities=18%  Similarity=0.225  Sum_probs=113.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV  143 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~  143 (592)
                      ||+|+|++|||||||+++|..+.+.. +.+|++... ..+..  ..+.++||||+|+                       
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~Dt~G~-----------------------   53 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV-ETVTY--KNLKFQVWDLGGQ-----------------------   53 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe-EEEEE--CCEEEEEEECCCC-----------------------
Confidence            68999999999999999998877763 456665222 22333  3477888999999                       


Q ss_pred             HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524         144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV  223 (592)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~  223 (592)
                                                      +.|..++..++..+|++|+|||++++.++.....++..+.+.....++
T Consensus        54 --------------------------------~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (158)
T cd04151          54 --------------------------------TSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGA  101 (158)
T ss_pred             --------------------------------HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCC
Confidence                                            778888899999999999999999998888777666655443233578


Q ss_pred             CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHH-HHHHh---hcCCCeEEEcccCCCccH
Q psy1524         224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTT-ESVVQ---VDWENGFVEASAKDNTNI  299 (592)
Q Consensus       224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~-~~la~---~~~~~~~~EvSAktg~gV  299 (592)
                      |+++|+||+|+....                                 ...+. ..+..   .....++++|||++|.||
T Consensus       102 piiiv~nK~Dl~~~~---------------------------------~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi  148 (158)
T cd04151         102 VLLVFANKQDMPGAL---------------------------------SEAEISEKLGLSELKDRTWSIFKTSAIKGEGL  148 (158)
T ss_pred             cEEEEEeCCCCCCCC---------------------------------CHHHHHHHhCccccCCCcEEEEEeeccCCCCH
Confidence            999999999986431                                 11111 11111   011246999999999999


Q ss_pred             HHHHHHHHH
Q psy1524         300 TQVFKELLV  308 (592)
Q Consensus       300 eeLf~~Li~  308 (592)
                      +++|++|++
T Consensus       149 ~~l~~~l~~  157 (158)
T cd04151         149 DEGMDWLVN  157 (158)
T ss_pred             HHHHHHHhc
Confidence            999999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.87  E-value=1.7e-21  Score=183.49  Aligned_cols=154  Identities=19%  Similarity=0.296  Sum_probs=116.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC------CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTF------SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f------~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      +|+|+|++|||||||+++|+....      ...+.+|+.... ..+.+++  +.+.+|||+|+                 
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~Dt~G~-----------------   60 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVGN--ARLKFWDLGGQ-----------------   60 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEECC--EEEEEEECCCC-----------------
Confidence            589999999999999999985422      234455554222 3445554  56777999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            +.+..++..++..+|++++|||+++..++..+..++..+.+.
T Consensus        61 --------------------------------------~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~  102 (167)
T cd04160          61 --------------------------------------ESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRN  102 (167)
T ss_pred             --------------------------------------hhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhC
Confidence                                                  677888888999999999999999999999998888887765


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh------cCCCeEEEc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV------DWENGFVEA  291 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~------~~~~~~~Ev  291 (592)
                      ....++|+++|+||+|+...                                 +..++...+...      ....+++++
T Consensus       103 ~~~~~~p~ilv~NK~D~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (167)
T cd04160         103 EALEGVPLLILANKQDLPDA---------------------------------LSVEEIKEVFQDKAEEIGRRDCLVLPV  149 (167)
T ss_pred             hhhcCCCEEEEEEccccccC---------------------------------CCHHHHHHHhccccccccCCceEEEEe
Confidence            44568999999999998643                                 122333332221      124579999


Q ss_pred             ccCCCccHHHHHHHHHH
Q psy1524         292 SAKDNTNITQVFKELLV  308 (592)
Q Consensus       292 SAktg~gVeeLf~~Li~  308 (592)
                      ||++|+||+++|++|++
T Consensus       150 Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         150 SALEGTGVREGIEWLVE  166 (167)
T ss_pred             eCCCCcCHHHHHHHHhc
Confidence            99999999999999865

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.87  E-value=2.8e-21  Score=180.56  Aligned_cols=153  Identities=16%  Similarity=0.238  Sum_probs=118.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV  143 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~  143 (592)
                      ||+++|.+|||||||++++++..+ ..+.+|++.. ...+.++  .+.+.+|||+|+                       
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~-~~~~~~~--~~~~~i~D~~G~-----------------------   53 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFN-VETVEYK--NVSFTVWDVGGQ-----------------------   53 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcc-eEEEEEC--CEEEEEEECCCC-----------------------
Confidence            699999999999999999998874 3455565522 2234444  467888999999                       


Q ss_pred             HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524         144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV  223 (592)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~  223 (592)
                                                      +.+..++..++..+|++++|||++++.++..+..++..+.......+.
T Consensus        54 --------------------------------~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (158)
T cd00878          54 --------------------------------DKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGV  101 (158)
T ss_pred             --------------------------------hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCC
Confidence                                            677778888999999999999999999999998888877665445689


Q ss_pred             CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh----hcCCCeEEEcccCCCccH
Q psy1524         224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ----VDWENGFVEASAKDNTNI  299 (592)
Q Consensus       224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~----~~~~~~~~EvSAktg~gV  299 (592)
                      |+++|+||+|+....                                 ..++......    .....+++++||++|.|+
T Consensus       102 piiiv~nK~D~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  148 (158)
T cd00878         102 PLLIFANKQDLPGAL---------------------------------SVSELIEKLGLEKILGRRWHIQPCSAVTGDGL  148 (158)
T ss_pred             cEEEEeeccCCcccc---------------------------------CHHHHHHhhChhhccCCcEEEEEeeCCCCCCH
Confidence            999999999987541                                 1122222221    124567999999999999


Q ss_pred             HHHHHHHHH
Q psy1524         300 TQVFKELLV  308 (592)
Q Consensus       300 eeLf~~Li~  308 (592)
                      +++|++|+.
T Consensus       149 ~~~~~~l~~  157 (158)
T cd00878         149 DEGLDWLLQ  157 (158)
T ss_pred             HHHHHHHhh
Confidence            999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PLN00023 GTP-binding protein; Provisional

Probab=99.86  E-value=1.1e-20  Score=196.89  Aligned_cols=126  Identities=22%  Similarity=0.355  Sum_probs=109.7

Q ss_pred             CCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeC-------------CeEEEEEEEeCCCCCC
Q psy1524          57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMN-------------GVHLKLDILDTSGEQS  122 (592)
Q Consensus        57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vd-------------g~~v~L~I~DT~G~~~  122 (592)
                      .+....+||+|+|+.|||||||+++|+.+.|...+.+|++ ++..+.+.++             +..+.++||||+|+  
T Consensus        16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq--   93 (334)
T PLN00023         16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH--   93 (334)
T ss_pred             CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC--
Confidence            3456779999999999999999999999999988999998 5556666664             35788999999999  


Q ss_pred             CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC
Q psy1524         123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN  202 (592)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~  202 (592)
                                                                           ++|..++..|++++|++|+|||++++.
T Consensus        94 -----------------------------------------------------ErfrsL~~~yyr~AdgiILVyDITdr~  120 (334)
T PLN00023         94 -----------------------------------------------------ERYKDCRSLFYSQINGVIFVHDLSQRR  120 (334)
T ss_pred             -----------------------------------------------------hhhhhhhHHhccCCCEEEEEEeCCCHH
Confidence                                                                 899999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhhc-----------CCCCCEEEEEeCCCCccc
Q psy1524         203 SFEEIRLIRDHIFETKA-----------STAVPIVVVGNKSDLADE  237 (592)
Q Consensus       203 Sfe~l~~~l~~L~~~~~-----------~~~~PIILVgNK~DL~~~  237 (592)
                      ||+++..|+..+.....           ..++|+||||||+||...
T Consensus       121 SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~  166 (334)
T PLN00023        121 TKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK  166 (334)
T ss_pred             HHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence            99999999999987531           135899999999999654

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.86  E-value=8e-21  Score=183.83  Aligned_cols=157  Identities=16%  Similarity=0.231  Sum_probs=118.9

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ..++|+++|.+|||||||+++|.++.+.. +.+|... ....+.+++  +.+.+|||+|+                    
T Consensus        16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~G~--------------------   71 (184)
T smart00178       16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP-TSEELAIGN--IKFTTFDLGGH--------------------   71 (184)
T ss_pred             ccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc-ceEEEEECC--EEEEEEECCCC--------------------
Confidence            34899999999999999999999887653 3455442 223344554  66777999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         +.+..++..++.++|++|+|+|++++.++.....++..+.+....
T Consensus        72 -----------------------------------~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~  116 (184)
T smart00178       72 -----------------------------------QQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEEL  116 (184)
T ss_pred             -----------------------------------HHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhh
Confidence                                               777888889999999999999999999999988888777654334


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh-----------hcCCCeEE
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ-----------VDWENGFV  289 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~-----------~~~~~~~~  289 (592)
                      .++|+++|+||+|+...                                 ++.++......           ......++
T Consensus       117 ~~~piliv~NK~Dl~~~---------------------------------~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~  163 (184)
T smart00178      117 ATVPFLILGNKIDAPYA---------------------------------ASEDELRYALGLTNTTGSKGKVGVRPLEVF  163 (184)
T ss_pred             cCCCEEEEEeCccccCC---------------------------------CCHHHHHHHcCCCcccccccccCCceeEEE
Confidence            57899999999998632                                 22222222111           01244599


Q ss_pred             EcccCCCccHHHHHHHHHHH
Q psy1524         290 EASAKDNTNITQVFKELLVQ  309 (592)
Q Consensus       290 EvSAktg~gVeeLf~~Li~~  309 (592)
                      +|||++|.|+++++++|+..
T Consensus       164 ~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      164 MCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             EeecccCCChHHHHHHHHhh
Confidence            99999999999999999765

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.85  E-value=2.3e-20  Score=171.87  Aligned_cols=153  Identities=22%  Similarity=0.313  Sum_probs=118.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHH
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVC  144 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~  144 (592)
                      |+|+|++|||||||+++|++..+...+.+|++.... .+..++  +.+.+|||+|+                        
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~------------------------   54 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR-KVTKGN--VTLKVWDLGGQ------------------------   54 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE-EEEECC--EEEEEEECCCC------------------------
Confidence            899999999999999999999999888888873332 233444  77888999999                        


Q ss_pred             HHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCC
Q psy1524         145 LRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVP  224 (592)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~P  224 (592)
                                                     +.+..++..++..+|++++|+|+++..++..+..++..+.......++|
T Consensus        55 -------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  103 (159)
T cd04159          55 -------------------------------PRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIP  103 (159)
T ss_pred             -------------------------------HhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCC
Confidence                                           7788888889999999999999999999988887777766543345789


Q ss_pred             EEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh----hcCCCeEEEcccCCCccHH
Q psy1524         225 IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ----VDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       225 IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~----~~~~~~~~EvSAktg~gVe  300 (592)
                      +++|+||+|+....                               .  .++......    .....+++++||++|.||+
T Consensus       104 ~iiv~nK~D~~~~~-------------------------------~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  150 (159)
T cd04159         104 LLVLGNKNDLPGAL-------------------------------S--VDELIEQMNLKSITDREVSCYSISCKEKTNID  150 (159)
T ss_pred             EEEEEeCccccCCc-------------------------------C--HHHHHHHhCcccccCCceEEEEEEeccCCChH
Confidence            99999999986541                               0  111111110    1223578999999999999


Q ss_pred             HHHHHHHH
Q psy1524         301 QVFKELLV  308 (592)
Q Consensus       301 eLf~~Li~  308 (592)
                      ++|+++.+
T Consensus       151 ~l~~~l~~  158 (159)
T cd04159         151 IVLDWLIK  158 (159)
T ss_pred             HHHHHHhh
Confidence            99999865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PTZ00099 rab6; Provisional

Probab=99.85  E-value=1.7e-20  Score=181.18  Aligned_cols=140  Identities=29%  Similarity=0.475  Sum_probs=122.8

Q ss_pred             CCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCc
Q psy1524          85 NTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLP  163 (592)
Q Consensus        85 ~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~  163 (592)
                      +.|.+.|.+|++ +++.+.+.+++..+.+.||||+|+                                           
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~-------------------------------------------   39 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ-------------------------------------------   39 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCCh-------------------------------------------
Confidence            467888999998 777788899999999999999999                                           


Q ss_pred             chhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccccccccc
Q psy1524         164 SKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDL  243 (592)
Q Consensus       164 ~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~  243 (592)
                                  ++|..++..++++||++|+|||++++.||+.+..|+..+.... ...+|+||||||+||...      
T Consensus        40 ------------e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~DL~~~------  100 (176)
T PTZ00099         40 ------------ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVIIALVGNKTDLGDL------  100 (176)
T ss_pred             ------------HHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccc------
Confidence                        8888899999999999999999999999999999999887653 457899999999999754      


Q ss_pred             CCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHHHH
Q psy1524         244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKV  312 (592)
Q Consensus       244 ~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~  312 (592)
                                               +.++.+++..++. .....|+||||++|.||+++|++|++.+..
T Consensus       101 -------------------------~~v~~~e~~~~~~-~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099        101 -------------------------RKVTYEEGMQKAQ-EYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             -------------------------cCCCHHHHHHHHH-HcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence                                     5677788888776 456679999999999999999999998844

>cd01890 LepA LepA subfamily

Probab=99.84  E-value=6.4e-20  Score=174.85  Aligned_cols=154  Identities=17%  Similarity=0.262  Sum_probs=109.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC-------CCCCccCce------e-eeEEEE--Eee---CCeEEEEEEEeCCCCCCCC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNT-------FSPKYKRTI------E-EMHHED--FSM---NGVHLKLDILDTSGEQSGK  124 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~-------f~~~~~~Tt------~-d~~~~~--v~v---dg~~v~L~I~DT~G~~~~~  124 (592)
                      +|+++|.+|||||||+++|++..       +...+.++.      + ......  +.+   ++..+.++||||||+    
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----   77 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGH----   77 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCC----
Confidence            69999999999999999999632       222333322      1 112222  222   667888999999999    


Q ss_pred             cccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCH
Q psy1524         125 GLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSF  204 (592)
Q Consensus       125 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sf  204 (592)
                                                                         ++|..+...++..+|++|+|||+++..++
T Consensus        78 ---------------------------------------------------~~~~~~~~~~~~~ad~~i~v~D~~~~~~~  106 (179)
T cd01890          78 ---------------------------------------------------VDFSYEVSRSLAACEGALLLVDATQGVEA  106 (179)
T ss_pred             ---------------------------------------------------hhhHHHHHHHHHhcCeEEEEEECCCCccH
Confidence                                                               67778888899999999999999998887


Q ss_pred             HHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcC
Q psy1524         205 EEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDW  284 (592)
Q Consensus       205 e~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~  284 (592)
                      ..+..|....     ..++|+|+|+||+|+...                               +  ..+....+++...
T Consensus       107 ~~~~~~~~~~-----~~~~~iiiv~NK~Dl~~~-------------------------------~--~~~~~~~~~~~~~  148 (179)
T cd01890         107 QTLANFYLAL-----ENNLEIIPVINKIDLPSA-------------------------------D--PERVKQQIEDVLG  148 (179)
T ss_pred             hhHHHHHHHH-----HcCCCEEEEEECCCCCcC-------------------------------C--HHHHHHHHHHHhC
Confidence            7776664322     236899999999998643                               0  0111223333211


Q ss_pred             --CCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         285 --ENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       285 --~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                        ...++++||++|.||+++|+.+.+.+
T Consensus       149 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         149 LDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             CCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence              12489999999999999999998765

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.83  E-value=1.4e-19  Score=170.60  Aligned_cols=163  Identities=20%  Similarity=0.232  Sum_probs=107.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      +|+|+|++|||||||+|+|++..+. ..+..++.+.....+..+  .+.++||||||+.+....+            .. 
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~------------~~-   66 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEE------------RN-   66 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccC------------Cc-
Confidence            7999999999999999999988764 233344443333333333  3677889999982110000            00 


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCH--HHHHHHHHHHHHhhcC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSF--EEIRLIRDHIFETKAS  220 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sf--e~l~~~l~~L~~~~~~  220 (592)
                       .                               -.+..+.. ....+|++|+|+|+++..++  +....|+..+...  .
T Consensus        67 -~-------------------------------~~~~~~~~-~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~  111 (168)
T cd01897          67 -T-------------------------------IEMQAITA-LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL--F  111 (168)
T ss_pred             -h-------------------------------HHHHHHHH-HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhh--c
Confidence             0                               00112211 12236899999999988654  6666777777653  2


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      .+.|+|+|+||+|+...                               +.+..  ...+.+ ....++++|||++|.|++
T Consensus       112 ~~~pvilv~NK~Dl~~~-------------------------------~~~~~--~~~~~~-~~~~~~~~~Sa~~~~gi~  157 (168)
T cd01897         112 KNKPVIVVLNKIDLLTF-------------------------------EDLSE--IEEEEE-LEGEEVLKISTLTEEGVD  157 (168)
T ss_pred             CcCCeEEEEEccccCch-------------------------------hhHHH--HHHhhh-hccCceEEEEecccCCHH
Confidence            47899999999999754                               11111  333333 345679999999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         301 QVFKELLVQA  310 (592)
Q Consensus       301 eLf~~Li~~i  310 (592)
                      ++|+++.+.+
T Consensus       158 ~l~~~l~~~~  167 (168)
T cd01897         158 EVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHh
Confidence            9999998876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01898 Obg Obg subfamily

Probab=99.83  E-value=9.9e-20  Score=171.64  Aligned_cols=165  Identities=18%  Similarity=0.232  Sum_probs=111.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      +|+|+|.+|||||||+|+|.+.... ..+..++.+.....+.+++. ..+.||||||+.+....                
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~----------------   64 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASE----------------   64 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccc----------------
Confidence            5899999999999999999976542 23333333333334444443 46677999998210000                


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc-CCHHHHHHHHHHHHHhhc-C
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP-NSFEEIRLIRDHIFETKA-S  220 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~-~Sfe~l~~~l~~L~~~~~-~  220 (592)
                                                      ...+.......+..+|++++|+|++++ .+++.+..|...+..... .
T Consensus        65 --------------------------------~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~  112 (170)
T cd01898          65 --------------------------------GKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPEL  112 (170)
T ss_pred             --------------------------------cCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccc
Confidence                                            001111111234569999999999999 899999999988876521 2


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      ..+|+++|+||+|+.+.                               ..+ .+....+........++++||+++.|++
T Consensus       113 ~~~p~ivv~NK~Dl~~~-------------------------------~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  160 (170)
T cd01898         113 LEKPRIVVLNKIDLLDE-------------------------------EEL-FELLKELLKELWGKPVFPISALTGEGLD  160 (170)
T ss_pred             cccccEEEEEchhcCCc-------------------------------hhh-HHHHHHHHhhCCCCCEEEEecCCCCCHH
Confidence            46899999999998754                               111 2233334332245679999999999999


Q ss_pred             HHHHHHHHH
Q psy1524         301 QVFKELLVQ  309 (592)
Q Consensus       301 eLf~~Li~~  309 (592)
                      ++|+.+.+.
T Consensus       161 ~l~~~i~~~  169 (170)
T cd01898         161 ELLRKLAEL  169 (170)
T ss_pred             HHHHHHHhh
Confidence            999998864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.83  E-value=2.7e-19  Score=163.19  Aligned_cols=156  Identities=29%  Similarity=0.429  Sum_probs=122.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      .+||+++|.+|||||||++++....+...+.+++. +.....+..++..+.+.+|||+|+                    
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--------------------   60 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ--------------------   60 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCc--------------------
Confidence            37999999999999999999998887766666666 555555677887788899999998                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc-CCHHHHH-HHHHHHHHhh
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP-NSFEEIR-LIRDHIFETK  218 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~-~Sfe~l~-~~l~~L~~~~  218 (592)
                                                         +.+..+...+...++.++.++|+... .++.... .+...+....
T Consensus        61 -----------------------------------~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~  105 (161)
T TIGR00231        61 -----------------------------------EDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA  105 (161)
T ss_pred             -----------------------------------ccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc
Confidence                                               67778888889999999999999887 7777765 5666666553


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      . .+.|+++|+||+|+...                               + +.......+ ......+++++||++|.|
T Consensus       106 ~-~~~p~ivv~nK~D~~~~-------------------------------~-~~~~~~~~~-~~~~~~~~~~~sa~~~~g  151 (161)
T TIGR00231       106 E-SNVPIILVGNKIDLRDA-------------------------------K-LKTHVAFLF-AKLNGEPIIPLSAETGKN  151 (161)
T ss_pred             c-cCCcEEEEEEcccCCcc-------------------------------h-hhHHHHHHH-hhccCCceEEeecCCCCC
Confidence            2 28899999999999754                               1 222222333 334456799999999999


Q ss_pred             HHHHHHHH
Q psy1524         299 ITQVFKEL  306 (592)
Q Consensus       299 VeeLf~~L  306 (592)
                      ++++|+.+
T Consensus       152 v~~~~~~l  159 (161)
T TIGR00231       152 IDSAFKIV  159 (161)
T ss_pred             HHHHHHHh
Confidence            99999876

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04155 Arl3 Arl3 subfamily

Probab=99.83  E-value=1.2e-19  Score=172.00  Aligned_cols=157  Identities=20%  Similarity=0.317  Sum_probs=115.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...++|+|+|++|||||||++++.+..+. .+.+|.+ .....+..++  ..+.+||++|+                   
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g-~~~~~i~~~~--~~~~~~D~~G~-------------------   68 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQG-FNIKTVQSDG--FKLNVWDIGGQ-------------------   68 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCC-cceEEEEECC--EEEEEEECCCC-------------------
Confidence            44789999999999999999999987664 3445554 2223445565  45677999998                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          ..+..++..++..+|++++|+|+++..++.....++..+.....
T Consensus        69 ------------------------------------~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~  112 (173)
T cd04155          69 ------------------------------------RAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEK  112 (173)
T ss_pred             ------------------------------------HHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChh
Confidence                                                66677777888999999999999999889888877777665433


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh----cCCCeEEEcccCC
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV----DWENGFVEASAKD  295 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~----~~~~~~~EvSAkt  295 (592)
                      ..++|+++|+||+|+....                                 ..++.......    .....++++||++
T Consensus       113 ~~~~p~ivv~nK~D~~~~~---------------------------------~~~~i~~~l~~~~~~~~~~~~~~~Sa~~  159 (173)
T cd04155         113 LAGVPVLVFANKQDLATAA---------------------------------PAEEIAEALNLHDLRDRTWHIQACSAKT  159 (173)
T ss_pred             hcCCCEEEEEECCCCccCC---------------------------------CHHHHHHHcCCcccCCCeEEEEEeECCC
Confidence            4579999999999986531                                 11111111110    1122478999999


Q ss_pred             CccHHHHHHHHHH
Q psy1524         296 NTNITQVFKELLV  308 (592)
Q Consensus       296 g~gVeeLf~~Li~  308 (592)
                      |+|++++|++|++
T Consensus       160 ~~gi~~~~~~l~~  172 (173)
T cd04155         160 GEGLQEGMNWVCK  172 (173)
T ss_pred             CCCHHHHHHHHhc
Confidence            9999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.83  E-value=3e-19  Score=176.09  Aligned_cols=178  Identities=27%  Similarity=0.368  Sum_probs=133.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      .+||+|+|++|||||||+++|..+.+...+.+|+. .........++..+.+.+|||+|+                    
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq--------------------   64 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ--------------------   64 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCH--------------------
Confidence            38999999999999999999999999999999987 444555555555888999999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC-cCCHHHHHHHHHHHHHhhc
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD-PNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd-~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                         ++|+.++..|+.+++++++|||+++ ..+++....|...+... .
T Consensus        65 -----------------------------------~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~-~  108 (219)
T COG1100          65 -----------------------------------EEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELREL-A  108 (219)
T ss_pred             -----------------------------------HHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHh-C
Confidence                                               8999999999999999999999999 55566667788887775 2


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh--cCCCeEEEcccC--C
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV--DWENGFVEASAK--D  295 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~--~~~~~~~EvSAk--t  295 (592)
                      ..+.|+|+|+||+|+........        .+..           ...+.+..+........  .....++++||+  +
T Consensus       109 ~~~~~iilv~nK~Dl~~~~~~~~--------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  169 (219)
T COG1100         109 PDDVPILLVGNKIDLFDEQSSSE--------EILN-----------QLNREVVLLVLAPKAVLPEVANPALLETSAKSLT  169 (219)
T ss_pred             CCCceEEEEecccccccchhHHH--------HHHh-----------hhhcCcchhhhHhHHhhhhhcccceeEeecccCC
Confidence            35789999999999987621100        0000           00012222222222211  223339999999  9


Q ss_pred             CccHHHHHHHHHHHHHHhc
Q psy1524         296 NTNITQVFKELLVQAKVKY  314 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~~~~  314 (592)
                      +.+|+++|..+++.+....
T Consensus       170 ~~~v~~~~~~~~~~~~~~~  188 (219)
T COG1100         170 GPNVNELFKELLRKLLEEI  188 (219)
T ss_pred             CcCHHHHHHHHHHHHHHhh
Confidence            9999999999999986543

>COG2262 HflX GTPases [General function prediction only]

Probab=99.82  E-value=7.7e-20  Score=192.76  Aligned_cols=253  Identities=16%  Similarity=0.170  Sum_probs=177.4

Q ss_pred             cccCCCCCCCCCcchhHHhhhhccccC---------CCCCCCCCCCcceEEEEEcCCCCcHHHHHHHHHcC-CCCCCccC
Q psy1524          24 AENAGSQFLQPSLNFNRILNLVSASSE---------NESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYN-TFSPKYKR   93 (592)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~s~~~~---------~~~~~~~~~~~~iKIvIvG~~nVGKSSLInrL~~~-~f~~~~~~   93 (592)
                      .+.-|.+..+-..+.+.+...+.....         ..............|+++|++|+|||||+|+|++. .+..+..+
T Consensus       145 iG~rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LF  224 (411)
T COG2262         145 IGFRGPGETQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLF  224 (411)
T ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeecccccc
Confidence            355566667777766655555444421         12223334456789999999999999999999965 45578888


Q ss_pred             ceeeeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhcccc
Q psy1524          94 TIEEMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMT  172 (592)
Q Consensus        94 Tt~d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (592)
                      +|.|..++.+.+. +..+.+  .||.|+                                       |+.+|+.+..+|.
T Consensus       225 ATLdpttR~~~l~~g~~vlL--tDTVGF---------------------------------------I~~LP~~LV~AFk  263 (411)
T COG2262         225 ATLDPTTRRIELGDGRKVLL--TDTVGF---------------------------------------IRDLPHPLVEAFK  263 (411)
T ss_pred             ccccCceeEEEeCCCceEEE--ecCccC---------------------------------------cccCChHHHHHHH
Confidence            9999999988886 566665  999999                                       7778888888888


Q ss_pred             ccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCccccc
Q psy1524         173 CSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYL  252 (592)
Q Consensus       173 ~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l  252 (592)
                      ++.|+        ...||++++|+|++++...+.+......|.+. ...++|+|+|.||+|+..+.              
T Consensus       264 sTLEE--------~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el-~~~~~p~i~v~NKiD~~~~~--------------  320 (411)
T COG2262         264 STLEE--------VKEADLLLHVVDASDPEILEKLEAVEDVLAEI-GADEIPIILVLNKIDLLEDE--------------  320 (411)
T ss_pred             HHHHH--------hhcCCEEEEEeecCChhHHHHHHHHHHHHHHc-CCCCCCEEEEEecccccCch--------------
Confidence            88887        78899999999999998888888888888887 55679999999999987651              


Q ss_pred             CCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHHHHhcccChhhhhhcccCCCCCC
Q psy1524         253 SGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQ  332 (592)
Q Consensus       253 ~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~~~~~~~~~~~~r~~~~~~~  332 (592)
                                       .    ....+.. ... ..+.+||++|+|++.|.+.|.+.+..........-+..........
T Consensus       321 -----------------~----~~~~~~~-~~~-~~v~iSA~~~~gl~~L~~~i~~~l~~~~~~~~l~lp~~~~~~~~~l  377 (411)
T COG2262         321 -----------------E----ILAELER-GSP-NPVFISAKTGEGLDLLRERIIELLSGLRTEVTLELPYTDAGRLSWL  377 (411)
T ss_pred             -----------------h----hhhhhhh-cCC-CeEEEEeccCcCHHHHHHHHHHHhhhcccceEEEcCcccccHHHHH
Confidence                             0    0111111 112 4789999999999999999999885443322111111111111111


Q ss_pred             CCCCCCCCCCcceeeEEeecCCeEEeecccCcchHHHHHH
Q psy1524         333 HSPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKE  372 (592)
Q Consensus       333 ~s~~pVpydta~slas~d~~~~fvEiSAK~~~nI~~lf~e  372 (592)
                      +        ....+.+.+|.+. +.+.++.......-|++
T Consensus       378 ~--------~~~~v~~~~~~e~-~~i~~~~~~~~~~~~~~  408 (411)
T COG2262         378 H--------DNGIVLEEEYGED-VRIKAEAPERLAKRLQE  408 (411)
T ss_pred             H--------hcceeeecccCCc-eEEEEEECHHHHHhhhh
Confidence            1        1123445566666 88888888777666654

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.82  E-value=5.2e-19  Score=187.14  Aligned_cols=168  Identities=17%  Similarity=0.162  Sum_probs=120.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEee-CCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSM-NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~v-dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ..|+|||.+|||||||+|++++... +..|..||.+.....+.+ ++..  +.||||||..++....             
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~--~~i~D~PGli~ga~~~-------------  223 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKS--FVIADIPGLIEGASEG-------------  223 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcE--EEEEeCCCccCCCCcc-------------
Confidence            5789999999999999999996542 356777887766666666 4434  5569999982110000             


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc-
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA-  219 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~-  219 (592)
                                                         ..+....-.++.+++++|+|+|+++.++++++..|..+|..+.. 
T Consensus       224 -----------------------------------~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~  268 (335)
T PRK12299        224 -----------------------------------AGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPE  268 (335)
T ss_pred             -----------------------------------ccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhh
Confidence                                               01111222246789999999999998899999999999977532 


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..++|+|+|+||+|+.+.                               ..+..++...+.. .....+++|||++++||
T Consensus       269 L~~kp~IIV~NKiDL~~~-------------------------------~~~~~~~~~~~~~-~~~~~i~~iSAktg~GI  316 (335)
T PRK12299        269 LADKPRILVLNKIDLLDE-------------------------------EEEREKRAALELA-ALGGPVFLISAVTGEGL  316 (335)
T ss_pred             cccCCeEEEEECcccCCc-------------------------------hhHHHHHHHHHHH-hcCCCEEEEEcCCCCCH
Confidence            147899999999999754                               1222223333332 33467999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1524         300 TQVFKELLVQAKV  312 (592)
Q Consensus       300 eeLf~~Li~~i~~  312 (592)
                      +++|+.|.+.+..
T Consensus       317 ~eL~~~L~~~l~~  329 (335)
T PRK12299        317 DELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988754

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.82  E-value=2.9e-19  Score=172.05  Aligned_cols=159  Identities=21%  Similarity=0.351  Sum_probs=125.9

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|..|||||||++++..+.+.. ..||++- ....+.+++  +.+.+||.+|+                   
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~-~~~~i~~~~--~~~~~~d~gG~-------------------   68 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGF-NIEEIKYKG--YSLTIWDLGGQ-------------------   68 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSE-EEEEEEETT--EEEEEEEESSS-------------------
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-cCccccc-ccceeeeCc--EEEEEEecccc-------------------
Confidence            567999999999999999999999775543 5666652 234455666  55677999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          ..++.++..|+.++|++|+|+|++|.+.+.+....+..+.....
T Consensus        69 ------------------------------------~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~  112 (175)
T PF00025_consen   69 ------------------------------------ESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPE  112 (175)
T ss_dssp             ------------------------------------GGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGG
T ss_pred             ------------------------------------ccccccceeeccccceeEEEEecccceeecccccchhhhcchhh
Confidence                                                78888999999999999999999999999999888888777545


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh---h--cCCCeEEEcccC
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ---V--DWENGFVEASAK  294 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~---~--~~~~~~~EvSAk  294 (592)
                      ..++|+++++||+|+.+.                                 .+.++......   .  .....++.|||+
T Consensus       113 ~~~~piLIl~NK~D~~~~---------------------------------~~~~~i~~~l~l~~l~~~~~~~v~~~sa~  159 (175)
T PF00025_consen  113 LKDIPILILANKQDLPDA---------------------------------MSEEEIKEYLGLEKLKNKRPWSVFSCSAK  159 (175)
T ss_dssp             GTTSEEEEEEESTTSTTS---------------------------------STHHHHHHHTTGGGTTSSSCEEEEEEBTT
T ss_pred             cccceEEEEeccccccCc---------------------------------chhhHHHhhhhhhhcccCCceEEEeeecc
Confidence            568999999999998754                                 23333333221   1  234568999999


Q ss_pred             CCccHHHHHHHHHHHH
Q psy1524         295 DNTNITQVFKELLVQA  310 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i  310 (592)
                      +|+||.|.|++|.+++
T Consensus       160 ~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  160 TGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             TTBTHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHhcC
Confidence            9999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>TIGR00436 era GTP-binding protein Era

Probab=99.82  E-value=2.1e-19  Score=184.72  Aligned_cols=210  Identities=15%  Similarity=0.145  Sum_probs=133.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +|+|+|.+|||||||+|+|++..+.  ..+..||.+........++.  .+.||||||+.....                
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~--qii~vDTPG~~~~~~----------------   63 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGAS--QIIFIDTPGFHEKKH----------------   63 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCc--EEEEEECcCCCCCcc----------------
Confidence            6999999999999999999988653  55667777655544444554  466799999821000                


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                     ...+.+......++.++|++++|+|+++..+++  ..++..+..    .
T Consensus        64 -------------------------------~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~----~  106 (270)
T TIGR00436        64 -------------------------------SLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN----L  106 (270)
T ss_pred             -------------------------------hHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh----c
Confidence                                           000111222344678999999999999887764  334444433    3


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      +.|+++|+||+|+....                                ...+....+........++++||++|.|+++
T Consensus       107 ~~p~ilV~NK~Dl~~~~--------------------------------~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~  154 (270)
T TIGR00436       107 KRPVVLTRNKLDNKFKD--------------------------------KLLPLIDKYAILEDFKDIVPISALTGDNTSF  154 (270)
T ss_pred             CCCEEEEEECeeCCCHH--------------------------------HHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence            68999999999986431                                0112333343322233799999999999999


Q ss_pred             HHHHHHHHHHHhcccChhhhhhcccC---------CCCCCCCCCCCCCCCcceeeEEeecC-CeEEeec
Q psy1524         302 VFKELLVQAKVKYNLSPALRRRRRQS---------LPPVQHSPNPVPYDTTESVVQVDWEN-GFVEASA  360 (592)
Q Consensus       302 Lf~~Li~~i~~~~~~~~~~~~~~r~~---------~~~~~~s~~pVpydta~slas~d~~~-~fvEiSA  360 (592)
                      +++.+.+.+.......+.........         ..-......++||..+..+..++.+. +.+.+.|
T Consensus       155 L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~~  223 (270)
T TIGR00436       155 LAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHA  223 (270)
T ss_pred             HHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEECCCCeEEEEE
Confidence            99999988755433222111111000         00112567889999999888776543 3444433

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.82  E-value=1.3e-19  Score=166.76  Aligned_cols=140  Identities=21%  Similarity=0.311  Sum_probs=98.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV  143 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~  143 (592)
                      ||+|+|++|||||||+|+|++..+.  +.+|+.      +....     .+|||+|...                     
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~------~~~~~-----~~iDt~G~~~---------------------   47 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA------VEYND-----GAIDTPGEYV---------------------   47 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--ccccee------EEEcC-----eeecCchhhh---------------------
Confidence            8999999999999999999987653  334432      11222     4699999710                     


Q ss_pred             HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524         144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV  223 (592)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~  223 (592)
                        .                           ..+.|..+.. .++++|++|+|||++++.++... .|...+       ..
T Consensus        48 --~---------------------------~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~~-~~~~~~-------~~   89 (142)
T TIGR02528        48 --E---------------------------NRRLYSALIV-TAADADVIALVQSATDPESRFPP-GFASIF-------VK   89 (142)
T ss_pred             --h---------------------------hHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCCh-hHHHhc-------cC
Confidence              0                           0022444444 48999999999999999988652 333211       24


Q ss_pred             CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHH
Q psy1524         224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF  303 (592)
Q Consensus       224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf  303 (592)
                      |+|+|+||+|+.+.                                .+..+++..+++.....+++++||++|.|++++|
T Consensus        90 p~ilv~NK~Dl~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  137 (142)
T TIGR02528        90 PVIGLVTKIDLAEA--------------------------------DVDIERAKELLETAGAEPIFEISSVDEQGLEALV  137 (142)
T ss_pred             CeEEEEEeeccCCc--------------------------------ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence            99999999998642                                2344555666654434479999999999999999


Q ss_pred             HHHH
Q psy1524         304 KELL  307 (592)
Q Consensus       304 ~~Li  307 (592)
                      +.+.
T Consensus       138 ~~l~  141 (142)
T TIGR02528       138 DYLN  141 (142)
T ss_pred             HHHh
Confidence            8874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04171 SelB SelB subfamily

Probab=99.81  E-value=5.1e-19  Score=165.09  Aligned_cols=153  Identities=18%  Similarity=0.175  Sum_probs=100.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC---CCCCCccCc-eeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN---TFSPKYKRT-IEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~---~f~~~~~~T-t~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      .|+|+|++|||||||+++|++.   .+...+.++ +.+.....+.+++ ...+++|||||+                   
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~-------------------   61 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGH-------------------   61 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCCh-------------------
Confidence            6899999999999999999963   333333332 2233334445542 346778999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc---CCHHHHHHHHHHHHH
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP---NSFEEIRLIRDHIFE  216 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~---~Sfe~l~~~l~~L~~  216 (592)
                                                          ++|......++.++|++|+|+|+++.   .+++.+    ..+..
T Consensus        62 ------------------------------------~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~----~~~~~  101 (164)
T cd04171          62 ------------------------------------EKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHL----EILEL  101 (164)
T ss_pred             ------------------------------------HHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHH----HHHHH
Confidence                                                66665556678899999999999873   333322    22222


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc--CCCeEEEcccC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD--WENGFVEASAK  294 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~--~~~~~~EvSAk  294 (592)
                      .   ...|+|+|+||+|+.....                             .....++.....+..  ...+++++||+
T Consensus       102 ~---~~~~~ilv~NK~Dl~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  149 (164)
T cd04171         102 L---GIKRGLVVLTKADLVDEDW-----------------------------LELVEEEIRELLAGTFLADAPIFPVSAV  149 (164)
T ss_pred             h---CCCcEEEEEECccccCHHH-----------------------------HHHHHHHHHHHHHhcCcCCCcEEEEeCC
Confidence            1   2349999999999975410                             001112233333322  35679999999


Q ss_pred             CCccHHHHHHHHHH
Q psy1524         295 DNTNITQVFKELLV  308 (592)
Q Consensus       295 tg~gVeeLf~~Li~  308 (592)
                      +|.||+++|+.+.+
T Consensus       150 ~~~~v~~l~~~l~~  163 (164)
T cd04171         150 TGEGIEELKEYLDE  163 (164)
T ss_pred             CCcCHHHHHHHHhh
Confidence            99999999988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.81  E-value=3.6e-19  Score=189.56  Aligned_cols=162  Identities=20%  Similarity=0.256  Sum_probs=116.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEee-CCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSM-NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~v-dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ...++|+|+|++|||||||+|+|++..+ ..++.++|.|...+.+.+ ++.  .+.||||+|+..           ..+.
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~--~i~l~DT~G~~~-----------~l~~  253 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGG--EVLLTDTVGFIR-----------DLPH  253 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCc--eEEEEecCcccc-----------cCCH
Confidence            3458999999999999999999998764 355667777888888888 454  556799999810           0000


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                 ..        .+.|..... .+.+||++|+|+|++++.+++++..|...+...
T Consensus       254 ---------------------------~l--------ie~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l  297 (351)
T TIGR03156       254 ---------------------------EL--------VAAFRATLE-EVREADLLLHVVDASDPDREEQIEAVEKVLEEL  297 (351)
T ss_pred             ---------------------------HH--------HHHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh
Confidence                                       00        023443332 478999999999999999988887777766654


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                       ...++|+|+|+||+|+...                               ..+     .....  ...++++|||++|.
T Consensus       298 -~~~~~piIlV~NK~Dl~~~-------------------------------~~v-----~~~~~--~~~~~i~iSAktg~  338 (351)
T TIGR03156       298 -GAEDIPQLLVYNKIDLLDE-------------------------------PRI-----ERLEE--GYPEAVFVSAKTGE  338 (351)
T ss_pred             -ccCCCCEEEEEEeecCCCh-------------------------------HhH-----HHHHh--CCCCEEEEEccCCC
Confidence             3457899999999998643                               111     11111  12358999999999


Q ss_pred             cHHHHHHHHHHH
Q psy1524         298 NITQVFKELLVQ  309 (592)
Q Consensus       298 gVeeLf~~Li~~  309 (592)
                      ||+++++.|.+.
T Consensus       339 GI~eL~~~I~~~  350 (351)
T TIGR03156       339 GLDLLLEAIAER  350 (351)
T ss_pred             CHHHHHHHHHhh
Confidence            999999988764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK15494 era GTPase Era; Provisional

Probab=99.80  E-value=8.6e-19  Score=186.01  Aligned_cols=204  Identities=19%  Similarity=0.224  Sum_probs=133.0

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .+.++|+|+|.+|||||||+|+|++..+.  .....||.+.....+..++.+  +.||||||+.+...            
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~q--i~~~DTpG~~~~~~------------  115 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQ--VILYDTPGIFEPKG------------  115 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeE--EEEEECCCcCCCcc------------
Confidence            56789999999999999999999988764  334455566666667777765  46799999821000            


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHH-HHHHHHH
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-IRDHIFE  216 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~-~l~~L~~  216 (592)
                       .+.                                  ..+......++.+||++|+|+|.++  +|..+.. |+..+..
T Consensus       116 -~l~----------------------------------~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~  158 (339)
T PRK15494        116 -SLE----------------------------------KAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRS  158 (339)
T ss_pred             -cHH----------------------------------HHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh
Confidence             000                                  1111222234789999999999765  4555543 4444433


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcC-CCeEEEcccCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDW-ENGFVEASAKD  295 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~-~~~~~EvSAkt  295 (592)
                          .+.|.|+|+||+|+...                                  ...++..++.... ...++++||++
T Consensus       159 ----~~~p~IlViNKiDl~~~----------------------------------~~~~~~~~l~~~~~~~~i~~iSAkt  200 (339)
T PRK15494        159 ----LNIVPIFLLNKIDIESK----------------------------------YLNDIKAFLTENHPDSLLFPISALS  200 (339)
T ss_pred             ----cCCCEEEEEEhhcCccc----------------------------------cHHHHHHHHHhcCCCcEEEEEeccC
Confidence                24677899999998532                                  1233444433222 35799999999


Q ss_pred             CccHHHHHHHHHHHHHHhcccChhhhhhcccCC---------CCCCCCCCCCCCCCcceeeEEeec
Q psy1524         296 NTNITQVFKELLVQAKVKYNLSPALRRRRRQSL---------PPVQHSPNPVPYDTTESVVQVDWE  352 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~~~~~~~~~~~~~~r~~~---------~~~~~s~~pVpydta~slas~d~~  352 (592)
                      |.||+++|+.+...+.......+..........         .-...-..++||..++.+.+++..
T Consensus       201 g~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~  266 (339)
T PRK15494        201 GKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDL  266 (339)
T ss_pred             ccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEEEc
Confidence            999999999999988766554443222111100         001245778999999988777653

>cd01878 HflX HflX subfamily

Probab=99.80  E-value=2.3e-18  Score=168.68  Aligned_cols=164  Identities=18%  Similarity=0.205  Sum_probs=112.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ...++|+|+|++|||||||+|++++..+. .....++.+.....+.+++. ..+.||||+|+.+..           .  
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~-----------~--  104 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDL-----------P--  104 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCC-----------C--
Confidence            45689999999999999999999987643 23233333444444555543 256679999981100           0  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                               .        ...+.+.... ..+..+|++++|+|++++.++..+..|...+... 
T Consensus       105 -------------------------~--------~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-  149 (204)
T cd01878         105 -------------------------H--------QLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKEL-  149 (204)
T ss_pred             -------------------------H--------HHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc-
Confidence                                     0        0001222222 2367899999999999999998887777766554 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      ...++|+++|+||+|+....                               .+     ..... ....+++++||++|.|
T Consensus       150 ~~~~~~viiV~NK~Dl~~~~-------------------------------~~-----~~~~~-~~~~~~~~~Sa~~~~g  192 (204)
T cd01878         150 GAEDIPMILVLNKIDLLDDE-------------------------------EL-----EERLE-AGRPDAVFISAKTGEG  192 (204)
T ss_pred             CcCCCCEEEEEEccccCChH-------------------------------HH-----HHHhh-cCCCceEEEEcCCCCC
Confidence            33568999999999997541                               00     01222 3456799999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQ  309 (592)
Q Consensus       299 VeeLf~~Li~~  309 (592)
                      |+++|+.|...
T Consensus       193 i~~l~~~L~~~  203 (204)
T cd01878         193 LDELLEAIEEL  203 (204)
T ss_pred             HHHHHHHHHhh
Confidence            99999998765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.80  E-value=1.1e-18  Score=192.94  Aligned_cols=174  Identities=19%  Similarity=0.227  Sum_probs=122.9

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ..+||+|+|.+|||||||+|+|++..+  ...+.+|+.+.....+.+++..+  .||||+|......             
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~--~l~DTaG~~~~~~-------------  274 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTW--RFVDTAGLRRRVK-------------  274 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEE--EEEECCCcccccc-------------
Confidence            468999999999999999999998764  45666777788778888888766  4699999821000             


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHH-HhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA-LSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~-~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                      .....+.|..+.. .++++||++|+|||+++..++.++. ++..+.. 
T Consensus       275 --------------------------------~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~-  320 (472)
T PRK03003        275 --------------------------------QASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE-  320 (472)
T ss_pred             --------------------------------ccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH-
Confidence                                            0011255655553 3688999999999999999988875 3343333 


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                         .++|+|+|+||+|+.....                             +.....+...........++++|||++|.
T Consensus       321 ---~~~piIiV~NK~Dl~~~~~-----------------------------~~~~~~~i~~~l~~~~~~~~~~~SAk~g~  368 (472)
T PRK03003        321 ---AGRALVLAFNKWDLVDEDR-----------------------------RYYLEREIDRELAQVPWAPRVNISAKTGR  368 (472)
T ss_pred             ---cCCCEEEEEECcccCChhH-----------------------------HHHHHHHHHHhcccCCCCCEEEEECCCCC
Confidence               4789999999999975310                             00001111111111234679999999999


Q ss_pred             cHHHHHHHHHHHHHHhcc
Q psy1524         298 NITQVFKELLVQAKVKYN  315 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~~~  315 (592)
                      ||+++|+.+.+.+.....
T Consensus       369 gv~~lf~~i~~~~~~~~~  386 (472)
T PRK03003        369 AVDKLVPALETALESWDT  386 (472)
T ss_pred             CHHHHHHHHHHHHHHhcc
Confidence            999999999988765443

>PRK11058 GTPase HflX; Provisional

Probab=99.79  E-value=1.1e-18  Score=190.21  Aligned_cols=217  Identities=17%  Similarity=0.137  Sum_probs=137.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ..+|+|+|++|||||||+|+|++..+ ..+...++.|...+.+.+.+.. .+.||||+|+..                  
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r------------------  257 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIR------------------  257 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccc------------------
Confidence            36899999999999999999997654 3455666777777777776531 345699999810                  


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                          ..+...        .+.|... ...+..||++|+|+|++++.+++.+..|...+... ..
T Consensus       258 --------------------~lp~~l--------ve~f~~t-l~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~  307 (426)
T PRK11058        258 --------------------HLPHDL--------VAAFKAT-LQETRQATLLLHVVDAADVRVQENIEAVNTVLEEI-DA  307 (426)
T ss_pred             --------------------cCCHHH--------HHHHHHH-HHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh-cc
Confidence                                000000        0223332 23468899999999999999888887666666554 33


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCe-EEEcccCCCccH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG-FVEASAKDNTNI  299 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~-~~EvSAktg~gV  299 (592)
                      .++|+|+|+||+|+....                               .   .... ..  ....+ ++++||++|.||
T Consensus       308 ~~~pvIiV~NKiDL~~~~-------------------------------~---~~~~-~~--~~~~~~~v~ISAktG~GI  350 (426)
T PRK11058        308 HEIPTLLVMNKIDMLDDF-------------------------------E---PRID-RD--EENKPIRVWLSAQTGAGI  350 (426)
T ss_pred             CCCCEEEEEEcccCCCch-------------------------------h---HHHH-HH--hcCCCceEEEeCCCCCCH
Confidence            578999999999986430                               0   0000 01  11223 588999999999


Q ss_pred             HHHHHHHHHHHHHhcccChhhhhhcccCCCCCCCCCCCCCCCCcceeeEEeecCCe-EEeecccCcchHHHHHH
Q psy1524         300 TQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPVPYDTTESVVQVDWENGF-VEASAKDNTNITQVFKE  372 (592)
Q Consensus       300 eeLf~~Li~~i~~~~~~~~~~~~~~r~~~~~~~~s~~pVpydta~slas~d~~~~f-vEiSAK~~~nI~~lf~e  372 (592)
                      +++++.+.+.+..........        .+.....-.--+.....+....+..++ +.+.++.+.....-|+.
T Consensus       351 deL~e~I~~~l~~~~~~~~~~--------~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (426)
T PRK11058        351 PLLFQALTERLSGEVAQHTLR--------LPPQEGRLRSRFYQLQAIEKEWMEEDGSVSLQVRMPIVDWRRLCK  416 (426)
T ss_pred             HHHHHHHHHHhhhccEEEEEE--------EChhhhhHHHHHHhcCceeEEEEcCCCEEEEEEEECHHHHHHHHH
Confidence            999999999874332211100        000000000012223334556666654 68888888777777765

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.79  E-value=3.1e-18  Score=160.92  Aligned_cols=157  Identities=24%  Similarity=0.269  Sum_probs=106.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      .|+|+|++|||||||+++|+.+.+...+.+++. +.....+..+ +....+.||||+|+                     
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~---------------------   60 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGH---------------------   60 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCc---------------------
Confidence            599999999999999999998877654443333 3222333333 13466778999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        +.|..++..++..+|++++|+|+++........ .+..+..    .
T Consensus        61 ----------------------------------~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~-~~~~~~~----~  101 (168)
T cd01887          61 ----------------------------------EAFTNMRARGASLTDIAILVVAADDGVMPQTIE-AIKLAKA----A  101 (168)
T ss_pred             ----------------------------------HHHHHHHHHHHhhcCEEEEEEECCCCccHHHHH-HHHHHHH----c
Confidence                                              677778888889999999999998854322222 2222322    4


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh-----hcCCCeEEEcccCCC
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ-----VDWENGFVEASAKDN  296 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~-----~~~~~~~~EvSAktg  296 (592)
                      ++|+++|+||+|+.....                             ..+. +....+..     .....+++++||++|
T Consensus       102 ~~p~ivv~NK~Dl~~~~~-----------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  151 (168)
T cd01887         102 NVPFIVALNKIDKPNANP-----------------------------ERVK-NELSELGLQGEDEWGGDVQIVPTSAKTG  151 (168)
T ss_pred             CCCEEEEEEceecccccH-----------------------------HHHH-HHHHHhhccccccccCcCcEEEeecccC
Confidence            689999999999874310                             0000 01111110     112457999999999


Q ss_pred             ccHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQA  310 (592)
Q Consensus       297 ~gVeeLf~~Li~~i  310 (592)
                      .||+++++++.+..
T Consensus       152 ~gi~~l~~~l~~~~  165 (168)
T cd01887         152 EGIDDLLEAILLLA  165 (168)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999998765

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK04213 GTP-binding protein; Provisional

Probab=99.78  E-value=1.2e-18  Score=170.10  Aligned_cols=166  Identities=14%  Similarity=0.141  Sum_probs=100.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...++|+|+|.+|||||||+|+|++..+...+.+++. .....+.++    .+++|||+|.+.....             
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t-~~~~~~~~~----~~~l~Dt~G~~~~~~~-------------   68 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT-RKPNHYDWG----DFILTDLPGFGFMSGV-------------   68 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee-eCceEEeec----ceEEEeCCcccccccc-------------
Confidence            3468999999999999999999998877654444443 122223333    3677999996210000             


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh----cCCcEEEEEeCCCcCCHHHHHHHH----
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS----SADAFILVYAIDDPNSFEEIRLIR----  211 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~----~AD~iIlVyDvsd~~Sfe~l~~~l----  211 (592)
                                                     ....++.++.++..++.    .++++++|+|.++...+.  ..|.    
T Consensus        69 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~  115 (201)
T PRK04213         69 -------------------------------PKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEII--ERWEGRGE  115 (201)
T ss_pred             -------------------------------CHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccc--cccccCCC
Confidence                                           00012566666666654    346777777765432210  1110    


Q ss_pred             ----HHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcC---
Q psy1524         212 ----DHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDW---  284 (592)
Q Consensus       212 ----~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~---  284 (592)
                          ..+.......++|+++|+||+|+...                               +   .+....+++...   
T Consensus       116 ~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~-------------------------------~---~~~~~~~~~~~~~~~  161 (201)
T PRK04213        116 IPIDVEMFDFLRELGIPPIVAVNKMDKIKN-------------------------------R---DEVLDEIAERLGLYP  161 (201)
T ss_pred             cHHHHHHHHHHHHcCCCeEEEEECccccCc-------------------------------H---HHHHHHHHHHhcCCc
Confidence                11111112247899999999998654                               1   112233322111   


Q ss_pred             -----CCeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524         285 -----ENGFVEASAKDNTNITQVFKELLVQAK  311 (592)
Q Consensus       285 -----~~~~~EvSAktg~gVeeLf~~Li~~i~  311 (592)
                           ..++++|||++| ||+++|+.|++.+.
T Consensus       162 ~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~  192 (201)
T PRK04213        162 PWRQWQDIIAPISAKKG-GIEELKEAIRKRLH  192 (201)
T ss_pred             cccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence                 125899999999 99999999998763

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.78  E-value=5.1e-18  Score=152.45  Aligned_cols=155  Identities=34%  Similarity=0.563  Sum_probs=116.6

Q ss_pred             EEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHH
Q psy1524          67 VMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCL  145 (592)
Q Consensus        67 IvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~  145 (592)
                      |+|.+|+|||||++++++... .....+|..+.....+...+....+.+||++|.                         
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~-------------------------   55 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQ-------------------------   55 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCCh-------------------------
Confidence            589999999999999998877 455555555666666666677788999999998                         


Q ss_pred             HHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCE
Q psy1524         146 RRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI  225 (592)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PI  225 (592)
                                                    ..+......++..+|++++|+|+++..++..+..|+..........+.|+
T Consensus        56 ------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (157)
T cd00882          56 ------------------------------ERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPI  105 (157)
T ss_pred             ------------------------------HHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcE
Confidence                                          44444556678899999999999999999888887433333335678999


Q ss_pred             EEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHH
Q psy1524         226 VVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKE  305 (592)
Q Consensus       226 ILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~  305 (592)
                      ++|+||+|+....                               .................+++++||+++.|+++++++
T Consensus       106 ivv~nk~D~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  154 (157)
T cd00882         106 ILVGNKIDLPEER-------------------------------VVSEEELAEQLAKELGVPYFETSAKTGENVEELFEE  154 (157)
T ss_pred             EEEEecccccccc-------------------------------chHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHH
Confidence            9999999987651                               111111122222345678999999999999999998


Q ss_pred             HH
Q psy1524         306 LL  307 (592)
Q Consensus       306 Li  307 (592)
                      +.
T Consensus       155 l~  156 (157)
T cd00882         155 LA  156 (157)
T ss_pred             Hh
Confidence            75

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.78  E-value=2.5e-18  Score=162.55  Aligned_cols=161  Identities=20%  Similarity=0.286  Sum_probs=108.5

Q ss_pred             EEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHH
Q psy1524          67 VMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVC  144 (592)
Q Consensus        67 IvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~  144 (592)
                      |+|++|||||||+|+|++..+ ...+..++.+.....+.++ +.  .+.||||||+.+....                  
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~i~DtpG~~~~~~~------------------   60 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGA--RIQVADIPGLIEGASE------------------   60 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCC--eEEEEeccccchhhhc------------------
Confidence            589999999999999998764 3455555555444455555 54  4567999998210000                  


Q ss_pred             HHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc------CCHHHHHHHHHHHHHhh
Q psy1524         145 LRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP------NSFEEIRLIRDHIFETK  218 (592)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~------~Sfe~l~~~l~~L~~~~  218 (592)
                                                    .+........++.++|++++|+|+++.      .+++++..|...+....
T Consensus        61 ------------------------------~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (176)
T cd01881          61 ------------------------------GRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYD  110 (176)
T ss_pred             ------------------------------CCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhh
Confidence                                          011111112346789999999999998      57888888888776542


Q ss_pred             cC------CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcc
Q psy1524         219 AS------TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEAS  292 (592)
Q Consensus       219 ~~------~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvS  292 (592)
                      ..      .+.|+++|+||+|+....                               .+......... ......++++|
T Consensus       111 ~~~~~~~~~~~p~ivv~NK~Dl~~~~-------------------------------~~~~~~~~~~~-~~~~~~~~~~S  158 (176)
T cd01881         111 LETILGLLTAKPVIYVLNKIDLDDAE-------------------------------ELEEELVRELA-LEEGAEVVPIS  158 (176)
T ss_pred             hhhHHHHHhhCCeEEEEEchhcCchh-------------------------------HHHHHHHHHHh-cCCCCCEEEEe
Confidence            21      478999999999997541                               11111111222 24456799999


Q ss_pred             cCCCccHHHHHHHHHHH
Q psy1524         293 AKDNTNITQVFKELLVQ  309 (592)
Q Consensus       293 Aktg~gVeeLf~~Li~~  309 (592)
                      |+++.|++++++.+++.
T Consensus       159 a~~~~gl~~l~~~l~~~  175 (176)
T cd01881         159 AKTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhhcCHHHHHHHHHhh
Confidence            99999999999988764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01894 EngA1 EngA1 subfamily

Probab=99.77  E-value=1.1e-17  Score=154.62  Aligned_cols=154  Identities=18%  Similarity=0.231  Sum_probs=103.9

Q ss_pred             EEEcCCCCcHHHHHHHHHcCC--CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524          66 VVMGGPKVGKSSIIHRFLYNT--FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV  143 (592)
Q Consensus        66 vIvG~~nVGKSSLInrL~~~~--f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~  143 (592)
                      +++|.+|||||||+|+|++..  +.+.+.+++.+........++  ..+.+|||||+.....                  
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~------------------   60 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDE------------------   60 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchh------------------
Confidence            589999999999999999764  445566666666666666666  4566799999921000                  


Q ss_pred             HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524         144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV  223 (592)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~  223 (592)
                                                   .....+......++..+|++++|+|+++..+..... +...+..    .+.
T Consensus        61 -----------------------------~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~----~~~  106 (157)
T cd01894          61 -----------------------------GISKEIREQAELAIEEADVILFVVDGREGLTPADEE-IAKYLRK----SKK  106 (157)
T ss_pred             -----------------------------HHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHH-HHHHHHh----cCC
Confidence                                         000112223344678899999999998776554432 2333333    258


Q ss_pred             CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHH
Q psy1524         224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF  303 (592)
Q Consensus       224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf  303 (592)
                      |+++|+||+|+....                               ..    ...+.. .....++++||++|.||+++|
T Consensus       107 piiiv~nK~D~~~~~-------------------------------~~----~~~~~~-~~~~~~~~~Sa~~~~gv~~l~  150 (157)
T cd01894         107 PVILVVNKVDNIKEE-------------------------------DE----AAEFYS-LGFGEPIPISAEHGRGIGDLL  150 (157)
T ss_pred             CEEEEEECcccCChH-------------------------------HH----HHHHHh-cCCCCeEEEecccCCCHHHHH
Confidence            999999999997641                               11    112222 222368999999999999999


Q ss_pred             HHHHHH
Q psy1524         304 KELLVQ  309 (592)
Q Consensus       304 ~~Li~~  309 (592)
                      +.+++.
T Consensus       151 ~~l~~~  156 (157)
T cd01894         151 DAILEL  156 (157)
T ss_pred             HHHHhh
Confidence            999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.76  E-value=1.2e-17  Score=182.90  Aligned_cols=160  Identities=24%  Similarity=0.346  Sum_probs=116.8

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCC--CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNT--FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~--f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ....+||+|+|++|||||||+|+|++..  ++..+.+|+.+.....+.+++..+  ++|||+|+.+...           
T Consensus       200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v--~l~DTaG~~~~~~-----------  266 (442)
T TIGR00450       200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILI--KLLDTAGIREHAD-----------  266 (442)
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEE--EEeeCCCcccchh-----------
Confidence            3456899999999999999999999764  457778888888888888888655  6799999822100           


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                        ..+..++                                  .....+++.+|++|+|||++++.+++..  |+..+..
T Consensus       267 --~ie~~gi----------------------------------~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~  308 (442)
T TIGR00450       267 --FVERLGI----------------------------------EKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK  308 (442)
T ss_pred             --HHHHHHH----------------------------------HHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh
Confidence              0011111                                  1223468899999999999999988775  5555432


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                          .++|+|+|+||+|+...                                     ....+++ ....+++++||++ 
T Consensus       309 ----~~~piIlV~NK~Dl~~~-------------------------------------~~~~~~~-~~~~~~~~vSak~-  345 (442)
T TIGR00450       309 ----SKKPFILVLNKIDLKIN-------------------------------------SLEFFVS-SKVLNSSNLSAKQ-  345 (442)
T ss_pred             ----CCCCEEEEEECccCCCc-------------------------------------chhhhhh-hcCCceEEEEEec-
Confidence                36899999999998532                                     0112222 3345689999998 


Q ss_pred             ccHHHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQAKV  312 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~~  312 (592)
                      .||+++|+.+.+.+..
T Consensus       346 ~gI~~~~~~L~~~i~~  361 (442)
T TIGR00450       346 LKIKALVDLLTQKINA  361 (442)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            6999999999998854

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.76  E-value=1.5e-17  Score=175.76  Aligned_cols=166  Identities=18%  Similarity=0.175  Sum_probs=116.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      ..|+|||.+|||||||+++|+.... +.+|..|+.......+.+++ ...++||||||+.+.....              
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~--------------  222 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEG--------------  222 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCccc--------------
Confidence            5889999999999999999997643 45666777666666666654 2345669999982110000              


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc---CCHHHHHHHHHHHHHhh
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP---NSFEEIRLIRDHIFETK  218 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~---~Sfe~l~~~l~~L~~~~  218 (592)
                                                        .......-..+.++|++|+|+|+++.   .+++++..|..++..+.
T Consensus       223 ----------------------------------~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~  268 (329)
T TIGR02729       223 ----------------------------------AGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYS  268 (329)
T ss_pred             ----------------------------------ccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhh
Confidence                                              01111112235679999999999987   68888888888887652


Q ss_pred             c-CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         219 A-STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       219 ~-~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                      . ..++|+|||+||+|+....                               . ..+..+.+++ .....++++||++++
T Consensus       269 ~~l~~kp~IIV~NK~DL~~~~-------------------------------~-~~~~~~~l~~-~~~~~vi~iSAktg~  315 (329)
T TIGR02729       269 PELAEKPRIVVLNKIDLLDEE-------------------------------E-LAELLKELKK-ALGKPVFPISALTGE  315 (329)
T ss_pred             hhhccCCEEEEEeCccCCChH-------------------------------H-HHHHHHHHHH-HcCCcEEEEEccCCc
Confidence            1 2478999999999997541                               1 1223334443 334679999999999


Q ss_pred             cHHHHHHHHHHHH
Q psy1524         298 NITQVFKELLVQA  310 (592)
Q Consensus       298 gVeeLf~~Li~~i  310 (592)
                      ||+++++.+.+.+
T Consensus       316 GI~eL~~~I~~~l  328 (329)
T TIGR02729       316 GLDELLYALAELL  328 (329)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>KOG0073|consensus

Probab=99.76  E-value=2.6e-17  Score=153.49  Aligned_cols=165  Identities=17%  Similarity=0.276  Sum_probs=125.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      .+.++|+|+|..|+|||||+++|.+.. .+...||.+ +-.+++.+++  +.+++||.+|+                   
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g-f~Iktl~~~~--~~L~iwDvGGq-------------------   70 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG-FQIKTLEYKG--YTLNIWDVGGQ-------------------   70 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc-eeeEEEEecc--eEEEEEEcCCc-------------------
Confidence            458999999999999999999999665 445566665 3334455555  67788999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          ..++..++.||..+|++|+|+|++|+..+++....+..+..-..
T Consensus        71 ------------------------------------~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eer  114 (185)
T KOG0073|consen   71 ------------------------------------KTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEER  114 (185)
T ss_pred             ------------------------------------chhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhh
Confidence                                                78899999999999999999999999999888777666654322


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCCh-HHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPY-DTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~-ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      -...|++|++||.|+...-.                            ...+.. -....+++ ....+.+-|||.+|++
T Consensus       115 laG~~~Lvlank~dl~~~l~----------------------------~~~i~~~~~L~~l~k-s~~~~l~~cs~~tge~  165 (185)
T KOG0073|consen  115 LAGAPLLVLANKQDLPGALS----------------------------LEEISKALDLEELAK-SHHWRLVKCSAVTGED  165 (185)
T ss_pred             hcCCceEEEEecCcCccccC----------------------------HHHHHHhhCHHHhcc-ccCceEEEEecccccc
Confidence            34589999999999974300                            011111 11223333 5567899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQAKV  312 (592)
Q Consensus       299 VeeLf~~Li~~i~~  312 (592)
                      +.+-|++++..+..
T Consensus       166 l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  166 LLEGIDWLCDDLMS  179 (185)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999865

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.76  E-value=1.1e-17  Score=155.46  Aligned_cols=153  Identities=18%  Similarity=0.242  Sum_probs=103.8

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHH
Q psy1524          67 VMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCL  145 (592)
Q Consensus        67 IvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~  145 (592)
                      |+|.+|||||||+|++++..+. ..+..++.+.....+.+++.  .+.||||||+......                   
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~-------------------   59 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGK--EIEIVDLPGTYSLSPY-------------------   59 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCe--EEEEEECCCccccCCC-------------------
Confidence            5899999999999999987644 34444555666667777774  5677999998211000                   


Q ss_pred             HHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh--cCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524         146 RRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS--SADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV  223 (592)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~--~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~  223 (592)
                                                    ..-..+...++.  .+|++|+|+|+++..+.   ..++..+..    .++
T Consensus        60 ------------------------------~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~----~~~  102 (158)
T cd01879          60 ------------------------------SEDEKVARDFLLGEKPDLIVNVVDATNLERN---LYLTLQLLE----LGL  102 (158)
T ss_pred             ------------------------------ChhHHHHHHHhcCCCCcEEEEEeeCCcchhH---HHHHHHHHH----cCC
Confidence                                          001123444554  89999999999876543   234444433    368


Q ss_pred             CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHH
Q psy1524         224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF  303 (592)
Q Consensus       224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf  303 (592)
                      |+|+|+||+|+.+.                               ..+..+ ...++. ..+.+++++||++|.|++++|
T Consensus       103 ~~iiv~NK~Dl~~~-------------------------------~~~~~~-~~~~~~-~~~~~~~~iSa~~~~~~~~l~  149 (158)
T cd01879         103 PVVVALNMIDEAEK-------------------------------RGIKID-LDKLSE-LLGVPVVPTSARKGEGIDELK  149 (158)
T ss_pred             CEEEEEehhhhccc-------------------------------ccchhh-HHHHHH-hhCCCeEEEEccCCCCHHHHH
Confidence            99999999999754                               112222 233333 345679999999999999999


Q ss_pred             HHHHHHH
Q psy1524         304 KELLVQA  310 (592)
Q Consensus       304 ~~Li~~i  310 (592)
                      +.+.+.+
T Consensus       150 ~~l~~~~  156 (158)
T cd01879         150 DAIAELA  156 (158)
T ss_pred             HHHHHHh
Confidence            9988764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.76  E-value=2.4e-17  Score=152.18  Aligned_cols=153  Identities=24%  Similarity=0.330  Sum_probs=108.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ++|+++|++|||||||++++++..+  .....+++.+.....+..++  ..+.+|||+|..+....             .
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~-------------~   66 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDE-------------I   66 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcch-------------H
Confidence            5899999999999999999997764  34455555566666666665  45567999998211000             0


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                      +                                  .........++..+|++++|+|++++.+......+..       .
T Consensus        67 ~----------------------------------~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~  105 (157)
T cd04164          67 E----------------------------------KIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-------P  105 (157)
T ss_pred             H----------------------------------HHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-------h
Confidence            0                                  0011122345778999999999999888877654433       3


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      ...|+++|+||+|+.+..                               ..        .......+++++||+++.|++
T Consensus       106 ~~~~vi~v~nK~D~~~~~-------------------------------~~--------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164         106 ADKPIIVVLNKSDLLPDS-------------------------------EL--------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             cCCCEEEEEEchhcCCcc-------------------------------cc--------ccccCCCceEEEECCCCCCHH
Confidence            478999999999997651                               11        122445679999999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         301 QVFKELLVQA  310 (592)
Q Consensus       301 eLf~~Li~~i  310 (592)
                      +++++|.+.+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.76  E-value=1.1e-17  Score=162.91  Aligned_cols=115  Identities=20%  Similarity=0.330  Sum_probs=83.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc--CCCCCCcc------------Ccee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCccc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY--NTFSPKYK------------RTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLK  127 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~--~~f~~~~~------------~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~  127 (592)
                      -+|+|+|.+|||||||+++|+.  +.|...+.            .+.+ +.......++...+.++||||+|+       
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~-------   75 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGH-------   75 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCc-------
Confidence            3899999999999999999997  56654331            1122 222333344555678888999999       


Q ss_pred             ccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH
Q psy1524         128 CGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI  207 (592)
Q Consensus       128 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l  207 (592)
                                                                      ++|..+...+++.+|++++|||+++.. +...
T Consensus        76 ------------------------------------------------~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~  106 (194)
T cd01891          76 ------------------------------------------------ADFGGEVERVLSMVDGVLLLVDASEGP-MPQT  106 (194)
T ss_pred             ------------------------------------------------HHHHHHHHHHHHhcCEEEEEEECCCCc-cHHH
Confidence                                                            778888888999999999999998753 3333


Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         208 RLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       208 ~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      ..++..+..    .++|+++|+||+|+...
T Consensus       107 ~~~~~~~~~----~~~p~iiv~NK~Dl~~~  132 (194)
T cd01891         107 RFVLKKALE----LGLKPIVVINKIDRPDA  132 (194)
T ss_pred             HHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence            444443322    36899999999999643

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.76  E-value=8.6e-18  Score=184.61  Aligned_cols=155  Identities=26%  Similarity=0.383  Sum_probs=114.5

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ..++|+|+|++|||||||+|+|++...  ...+.+|+.+.....+.+++..  +.||||+|+.+.             ..
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--i~l~DT~G~~~~-------------~~  278 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIP--LRLIDTAGIRET-------------DD  278 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeE--EEEEeCCCCCCC-------------cc
Confidence            448999999999999999999998753  5677788888888888888855  566999998211             00


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                      ..+.+++++                                  ...++..+|++|+|||++++.++++...|..      
T Consensus       279 ~ie~~gi~~----------------------------------~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~------  318 (449)
T PRK05291        279 EVEKIGIER----------------------------------SREAIEEADLVLLVLDASEPLTEEDDEILEE------  318 (449)
T ss_pred             HHHHHHHHH----------------------------------HHHHHHhCCEEEEEecCCCCCChhHHHHHHh------
Confidence            111111111                                  1235889999999999999988876544332      


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                       ..+.|+++|+||+|+....                               .+.         .....+++++||++|.|
T Consensus       319 -~~~~piiiV~NK~DL~~~~-------------------------------~~~---------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        319 -LKDKPVIVVLNKADLTGEI-------------------------------DLE---------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             -cCCCCcEEEEEhhhccccc-------------------------------hhh---------hccCCceEEEEeeCCCC
Confidence             3468999999999997541                               111         12345689999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQAK  311 (592)
Q Consensus       299 VeeLf~~Li~~i~  311 (592)
                      |+++++.+.+.+.
T Consensus       358 I~~L~~~L~~~l~  370 (449)
T PRK05291        358 IDELREAIKELAF  370 (449)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998873

>cd01895 EngA2 EngA2 subfamily

Probab=99.76  E-value=4.2e-17  Score=152.62  Aligned_cols=165  Identities=20%  Similarity=0.303  Sum_probs=107.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      .++|+++|.+|+|||||+|+|++..+.  .....++.+.....+..++..  +.+|||+|.......             
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~-------------   66 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKV-------------   66 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccch-------------
Confidence            479999999999999999999987532  344445545555566667655  456999998211000             


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHH-HHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR-ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~-~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                      ....+.+..+. ..++..+|++++|+|++++.+..... ++..+.   
T Consensus        67 --------------------------------~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---  110 (174)
T cd01895          67 --------------------------------EEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLR-IAGLIL---  110 (174)
T ss_pred             --------------------------------hccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH---
Confidence                                            00012222222 23567899999999999988866543 222222   


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc----CCCeEEEcccC
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD----WENGFVEASAK  294 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~----~~~~~~EvSAk  294 (592)
                       ..+.|+++|+||+|+....                               ....+......+..    ...+++++||+
T Consensus       111 -~~~~~~iiv~nK~Dl~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  158 (174)
T cd01895         111 -EEGKALVIVVNKWDLVEKD-------------------------------SKTMKEFKKEIRRKLPFLDYAPIVFISAL  158 (174)
T ss_pred             -hcCCCEEEEEeccccCCcc-------------------------------HHHHHHHHHHHHhhcccccCCceEEEecc
Confidence             2368999999999987541                               11112212222111    23679999999


Q ss_pred             CCccHHHHHHHHHHH
Q psy1524         295 DNTNITQVFKELLVQ  309 (592)
Q Consensus       295 tg~gVeeLf~~Li~~  309 (592)
                      ++.|++++++.+.+.
T Consensus       159 ~~~~i~~~~~~l~~~  173 (174)
T cd01895         159 TGQGVDKLFDAIDEV  173 (174)
T ss_pred             CCCCHHHHHHHHHHh
Confidence            999999999988753

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.75  E-value=3e-17  Score=178.88  Aligned_cols=175  Identities=20%  Similarity=0.277  Sum_probs=118.0

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ....++|+++|.+|||||||+|+|++...  .....+|+.+.....+..++..  +.+|||+|+.......         
T Consensus       169 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~liDT~G~~~~~~~~---------  237 (429)
T TIGR03594       169 EDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKK--YLLIDTAGIRRKGKVT---------  237 (429)
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcE--EEEEECCCccccccch---------
Confidence            34568999999999999999999997653  4566777777777777777764  5569999982211000         


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHH-HhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA-LSISSADAFILVYAIDDPNSFEEIRLIRDHIF  215 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~-~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~  215 (592)
                                                          ...+.|..+.. .+++.||++|+|+|+++..+..+.. ++..+.
T Consensus       238 ------------------------------------~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~  280 (429)
T TIGR03594       238 ------------------------------------EGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLIL  280 (429)
T ss_pred             ------------------------------------hhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHH
Confidence                                                01133433332 3688999999999999988877654 233332


Q ss_pred             HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524         216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD  295 (592)
Q Consensus       216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt  295 (592)
                      +    .++|+|+|+||+|+.+.....                           ..+. ............+++++|||++
T Consensus       281 ~----~~~~iiiv~NK~Dl~~~~~~~---------------------------~~~~-~~~~~~~~~~~~~~vi~~SA~~  328 (429)
T TIGR03594       281 E----AGKALVIVVNKWDLVKDEKTR---------------------------EEFK-KELRRKLPFLDFAPIVFISALT  328 (429)
T ss_pred             H----cCCcEEEEEECcccCCCHHHH---------------------------HHHH-HHHHHhcccCCCCceEEEeCCC
Confidence            2    368999999999997220000                           0000 1111111112356899999999


Q ss_pred             CccHHHHHHHHHHHHHHh
Q psy1524         296 NTNITQVFKELLVQAKVK  313 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~~~  313 (592)
                      |.||+++|+.+.+.+...
T Consensus       329 g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       329 GQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            999999999999877543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.75  E-value=8.1e-18  Score=159.24  Aligned_cols=153  Identities=20%  Similarity=0.269  Sum_probs=104.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      ++|+++|.||||||||+|+|++... ..++..+|.+.....+.+++..+.+  +|+||.-+            ....   
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~l--vDlPG~ys------------l~~~---   63 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVEL--VDLPGIYS------------LSSK---   63 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEE--EE----SS------------SSSS---
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEE--EECCCccc------------CCCC---
Confidence            6899999999999999999998764 3677888888888888888866555  99999711            1100   


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHh--hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALS--ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~--~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                        ..-..+...+  ....|++|+|.|+++.   +.-..+..++.+.  
T Consensus        64 ----------------------------------s~ee~v~~~~l~~~~~D~ii~VvDa~~l---~r~l~l~~ql~e~--  104 (156)
T PF02421_consen   64 ----------------------------------SEEERVARDYLLSEKPDLIIVVVDATNL---ERNLYLTLQLLEL--  104 (156)
T ss_dssp             ----------------------------------SHHHHHHHHHHHHTSSSEEEEEEEGGGH---HHHHHHHHHHHHT--
T ss_pred             ----------------------------------CcHHHHHHHHHhhcCCCEEEEECCCCCH---HHHHHHHHHHHHc--
Confidence                                              1111233333  3689999999999874   3323344555553  


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                        ++|+|+|+||+|+....                               .+.. ....+.+ ..+++++.+||+++.|+
T Consensus       105 --g~P~vvvlN~~D~a~~~-------------------------------g~~i-d~~~Ls~-~Lg~pvi~~sa~~~~g~  149 (156)
T PF02421_consen  105 --GIPVVVVLNKMDEAERK-------------------------------GIEI-DAEKLSE-RLGVPVIPVSARTGEGI  149 (156)
T ss_dssp             --TSSEEEEEETHHHHHHT-------------------------------TEEE--HHHHHH-HHTS-EEEEBTTTTBTH
T ss_pred             --CCCEEEEEeCHHHHHHc-------------------------------CCEE-CHHHHHH-HhCCCEEEEEeCCCcCH
Confidence              69999999999998762                               2221 2334444 45789999999999999


Q ss_pred             HHHHHHH
Q psy1524         300 TQVFKEL  306 (592)
Q Consensus       300 eeLf~~L  306 (592)
                      +++++.+
T Consensus       150 ~~L~~~I  156 (156)
T PF02421_consen  150 DELKDAI  156 (156)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhC
Confidence            9999865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK00089 era GTPase Era; Reviewed

Probab=99.75  E-value=1.6e-17  Score=172.25  Aligned_cols=207  Identities=16%  Similarity=0.181  Sum_probs=128.1

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      +.-.|+|+|.+|||||||+|+|++..+.  .....|+.+.....+..++  ..+.|+||||......             
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~-------------   68 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKR-------------   68 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchh-------------
Confidence            4567999999999999999999988653  4445555554444333344  4566799999821100             


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                        ...+.+.......+..+|++++|+|+++..+- ....++..+.   
T Consensus        69 ----------------------------------~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~-~~~~i~~~l~---  110 (292)
T PRK00089         69 ----------------------------------ALNRAMNKAAWSSLKDVDLVLFVVDADEKIGP-GDEFILEKLK---  110 (292)
T ss_pred             ----------------------------------HHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCh-hHHHHHHHHh---
Confidence                                              00022223334467889999999999883321 1222223232   


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                       ..+.|+++|+||+|+....                               ....+....+.+......++++||+++.|
T Consensus       111 -~~~~pvilVlNKiDl~~~~-------------------------------~~l~~~~~~l~~~~~~~~i~~iSA~~~~g  158 (292)
T PRK00089        111 -KVKTPVILVLNKIDLVKDK-------------------------------EELLPLLEELSELMDFAEIVPISALKGDN  158 (292)
T ss_pred             -hcCCCEEEEEECCcCCCCH-------------------------------HHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence             2368999999999997331                               11123344444433456799999999999


Q ss_pred             HHHHHHHHHHHHHHhcccChhhhhhcccC---------CCCCCCCCCCCCCCCcceeeEEeec
Q psy1524         299 ITQVFKELLVQAKVKYNLSPALRRRRRQS---------LPPVQHSPNPVPYDTTESVVQVDWE  352 (592)
Q Consensus       299 VeeLf~~Li~~i~~~~~~~~~~~~~~r~~---------~~~~~~s~~pVpydta~slas~d~~  352 (592)
                      ++++++.+.+.+.......+.........         ......-...+||..+..+.+++.+
T Consensus       159 v~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~  221 (292)
T PRK00089        159 VDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFEER  221 (292)
T ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEEEC
Confidence            99999999988754433322211111000         0011245778999999887766554

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.75  E-value=3.3e-17  Score=181.24  Aligned_cols=161  Identities=17%  Similarity=0.231  Sum_probs=112.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ..+|+|+|.+|||||||+|+|++..+  ......++.+.....+.+++..  +.||||+|+....               
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~--~~l~DT~G~~~~~---------------  100 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRR--FTVVDTGGWEPDA---------------  100 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcE--EEEEeCCCcCCcc---------------
Confidence            37999999999999999999998754  2444445556666666777765  5569999982100               


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                      ....+.+......++..||++|+|||+++..++.. ..+...+..   
T Consensus       101 --------------------------------~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---  144 (472)
T PRK03003        101 --------------------------------KGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR---  144 (472)
T ss_pred             --------------------------------hhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---
Confidence                                            00013455556678899999999999999887654 334444433   


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                       .++|+|+|+||+|+....                                  .+. ..+...... ..++|||++|.||
T Consensus       145 -~~~piilV~NK~Dl~~~~----------------------------------~~~-~~~~~~g~~-~~~~iSA~~g~gi  187 (472)
T PRK03003        145 -SGKPVILAANKVDDERGE----------------------------------ADA-AALWSLGLG-EPHPVSALHGRGV  187 (472)
T ss_pred             -cCCCEEEEEECccCCccc----------------------------------hhh-HHHHhcCCC-CeEEEEcCCCCCc
Confidence             478999999999986420                                  011 112221222 3579999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1524         300 TQVFKELLVQAKV  312 (592)
Q Consensus       300 eeLf~~Li~~i~~  312 (592)
                      +++|+.+++.+..
T Consensus       188 ~eL~~~i~~~l~~  200 (472)
T PRK03003        188 GDLLDAVLAALPE  200 (472)
T ss_pred             HHHHHHHHhhccc
Confidence            9999999988754

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.74  E-value=1.3e-17  Score=148.84  Aligned_cols=115  Identities=33%  Similarity=0.542  Sum_probs=85.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC--CCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ||+|+|++|||||||+++|++..+.  ..+..+.. ........+......+.+||++|.                    
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~--------------------   60 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQ--------------------   60 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSS--------------------
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCcc--------------------
Confidence            7999999999999999999988876  12222222 333345566777667899999998                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh-c
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK-A  219 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~-~  219 (592)
                                                         +.+......++..+|++|+|||++++.||+.+..++..+.... .
T Consensus        61 -----------------------------------~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~  105 (119)
T PF08477_consen   61 -----------------------------------EEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKR  105 (119)
T ss_dssp             -----------------------------------HCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------ceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc
Confidence                                               5555555556899999999999999999999877666555543 2


Q ss_pred             CCCCCEEEEEeCCC
Q psy1524         220 STAVPIVVVGNKSD  233 (592)
Q Consensus       220 ~~~~PIILVgNK~D  233 (592)
                      ..++|+|||+||.|
T Consensus       106 ~~~~piilv~nK~D  119 (119)
T PF08477_consen  106 DKNIPIILVGNKSD  119 (119)
T ss_dssp             SSCSEEEEEEE-TC
T ss_pred             CCCCCEEEEEeccC
Confidence            45699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG3883|consensus

Probab=99.74  E-value=3.2e-17  Score=151.12  Aligned_cols=167  Identities=30%  Similarity=0.429  Sum_probs=141.2

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      -...||+++|..+||||+|+.+++.+...  ..+.+|++|.|...+..+ +..-.+.|.||.|..               
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq---------------   71 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQ---------------   71 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeeccccc---------------
Confidence            35579999999999999999999966443  677899999998887764 445678889999981               


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             ..-..+-..|+.-+|++++|||..|++||..+..+-.+|.+
T Consensus        72 ---------------------------------------~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk  112 (198)
T KOG3883|consen   72 ---------------------------------------GGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDK  112 (198)
T ss_pred             ---------------------------------------CchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhh
Confidence                                                   11134556788899999999999999999999998888888


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      ......+||++++||+|+.+.                               +.+..+.++.+++ ...+..+|++|+..
T Consensus       113 ~KdKKEvpiVVLaN~rdr~~p-------------------------------~~vd~d~A~~Wa~-rEkvkl~eVta~dR  160 (198)
T KOG3883|consen  113 HKDKKEVPIVVLANKRDRAEP-------------------------------REVDMDVAQIWAK-REKVKLWEVTAMDR  160 (198)
T ss_pred             ccccccccEEEEechhhcccc-------------------------------hhcCHHHHHHHHh-hhheeEEEEEeccc
Confidence            777788999999999999876                               7889999999998 56778999999999


Q ss_pred             ccHHHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQAKV  312 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~~  312 (592)
                      ..+-|.|..++..+..
T Consensus       161 ~sL~epf~~l~~rl~~  176 (198)
T KOG3883|consen  161 PSLYEPFTYLASRLHQ  176 (198)
T ss_pred             hhhhhHHHHHHHhccC
Confidence            9999999999888744

>COG1159 Era GTPase [General function prediction only]

Probab=99.73  E-value=6.5e-17  Score=164.94  Aligned_cols=216  Identities=15%  Similarity=0.158  Sum_probs=144.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .+.--|+|+|.||||||||+|++++.+.  ++....||.......++.++.++.+  +||||....             +
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIf--vDTPGih~p-------------k   68 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIF--VDTPGIHKP-------------K   68 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEE--EeCCCCCCc-------------c
Confidence            4567899999999999999999998865  4778888888888888888766665  999999321             1


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                      ..+.                                  +.+.......+.++|+++||+|+++...- .....++.+.+ 
T Consensus        69 ~~l~----------------------------------~~m~~~a~~sl~dvDlilfvvd~~~~~~~-~d~~il~~lk~-  112 (298)
T COG1159          69 HALG----------------------------------ELMNKAARSALKDVDLILFVVDADEGWGP-GDEFILEQLKK-  112 (298)
T ss_pred             hHHH----------------------------------HHHHHHHHHHhccCcEEEEEEeccccCCc-cHHHHHHHHhh-
Confidence            1111                                  22333344468899999999999874332 22223343433 


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                         .+.|+|++.||+|...+.                               .........+.........+++||++|.
T Consensus       113 ---~~~pvil~iNKID~~~~~-------------------------------~~l~~~~~~~~~~~~f~~ivpiSA~~g~  158 (298)
T COG1159         113 ---TKTPVILVVNKIDKVKPK-------------------------------TVLLKLIAFLKKLLPFKEIVPISALKGD  158 (298)
T ss_pred             ---cCCCeEEEEEccccCCcH-------------------------------HHHHHHHHHHHhhCCcceEEEeeccccC
Confidence               468999999999988761                               1111222222222334469999999999


Q ss_pred             cHHHHHHHHHHHHHHhcccChhhhhhcccCCCC---------CCCCCCCCCCCCcceeeEEeec-CCeEEeec
Q psy1524         298 NITQVFKELLVQAKVKYNLSPALRRRRRQSLPP---------VQHSPNPVPYDTTESVVQVDWE-NGFVEASA  360 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~~~~~~~~~~~~r~~~~~---------~~~s~~pVpydta~slas~d~~-~~fvEiSA  360 (592)
                      |++.+.+.+...+.+.....|...-..+.....         ...-..++||..+..+..++.+ .+-+.+.|
T Consensus       159 n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a  231 (298)
T COG1159         159 NVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHA  231 (298)
T ss_pred             CHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEE
Confidence            999999999999877665555433222221111         1234678999999888877764 44444443

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.73  E-value=5.7e-17  Score=154.78  Aligned_cols=156  Identities=19%  Similarity=0.234  Sum_probs=106.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCce-----------------eeeEEEEEeeCCeEEEEEEEeCCCCCCCCcc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI-----------------EEMHHEDFSMNGVHLKLDILDTSGEQSGKGL  126 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt-----------------~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~  126 (592)
                      +|+|+|.+|||||||+|+|++......+..+.                 .+.....+...  ...+.||||||+      
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~------   72 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGH------   72 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCc------
Confidence            48999999999999999999876654332211                 12222222333  356777999998      


Q ss_pred             cccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHH
Q psy1524         127 KCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEE  206 (592)
Q Consensus       127 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~  206 (592)
                                                                       ..+......++..+|++++|+|+++..+...
T Consensus        73 -------------------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~  103 (189)
T cd00881          73 -------------------------------------------------EDFSSEVIRGLSVSDGAILVVDANEGVQPQT  103 (189)
T ss_pred             -------------------------------------------------HHHHHHHHHHHHhcCEEEEEEECCCCCcHHH
Confidence                                                             5566677778899999999999988765543


Q ss_pred             HHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh----
Q psy1524         207 IRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV----  282 (592)
Q Consensus       207 l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~----  282 (592)
                      . .++..+..    .+.|+++|+||+|+......                             ....++.....+.    
T Consensus       104 ~-~~~~~~~~----~~~~i~iv~nK~D~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~  149 (189)
T cd00881         104 R-EHLRIARE----GGLPIIVAINKIDRVGEEDL-----------------------------EEVLREIKELLGLIGFI  149 (189)
T ss_pred             H-HHHHHHHH----CCCCeEEEEECCCCcchhcH-----------------------------HHHHHHHHHHHcccccc
Confidence            3 23333322    47899999999999753100                             0011122222211    


Q ss_pred             ---------cCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         283 ---------DWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       283 ---------~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                               ....+++++||++|.|++++|+.+.+.+
T Consensus       150 ~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         150 STKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             chhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                     2457799999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.73  E-value=1.6e-16  Score=172.53  Aligned_cols=162  Identities=17%  Similarity=0.184  Sum_probs=115.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ..|+|||.+|||||||||++++... ..+|..||.+.....+.++ +.  .+.||||||..++.                
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~--~~~laD~PGliega----------------  220 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGR--SFVMADIPGLIEGA----------------  220 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCc--eEEEEECCCCcccc----------------
Confidence            4899999999999999999997653 2467777766555555554 43  45669999982110                


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHH---hhhcCCcEEEEEeCCCc---CCHHHHHHHHHHH
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRAL---SISSADAFILVYAIDDP---NSFEEIRLIRDHI  214 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~---~~~~AD~iIlVyDvsd~---~Sfe~l~~~l~~L  214 (592)
                                                         .....+...   .+.+++++|+|+|+++.   .+++++..|..+|
T Consensus       221 -----------------------------------~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL  265 (424)
T PRK12297        221 -----------------------------------SEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKEL  265 (424)
T ss_pred             -----------------------------------cccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHH
Confidence                                               111112222   35679999999999865   6788888888888


Q ss_pred             HHhhc-CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEccc
Q psy1524         215 FETKA-STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASA  293 (592)
Q Consensus       215 ~~~~~-~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSA  293 (592)
                      ..+.. ..++|+|||+||+|+...                                   .+....+.+. ...+++++||
T Consensus       266 ~~y~~~L~~kP~IVV~NK~DL~~~-----------------------------------~e~l~~l~~~-l~~~i~~iSA  309 (424)
T PRK12297        266 KLYNPRLLERPQIVVANKMDLPEA-----------------------------------EENLEEFKEK-LGPKVFPISA  309 (424)
T ss_pred             hhhchhccCCcEEEEEeCCCCcCC-----------------------------------HHHHHHHHHH-hCCcEEEEeC
Confidence            77521 247899999999998432                                   1223344432 2357999999


Q ss_pred             CCCccHHHHHHHHHHHHHHh
Q psy1524         294 KDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       294 ktg~gVeeLf~~Li~~i~~~  313 (592)
                      ++++||+++++.+.+.+...
T Consensus       310 ~tgeGI~eL~~~L~~~l~~~  329 (424)
T PRK12297        310 LTGQGLDELLYAVAELLEET  329 (424)
T ss_pred             CCCCCHHHHHHHHHHHHHhC
Confidence            99999999999999887543

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.73  E-value=4.7e-17  Score=174.54  Aligned_cols=165  Identities=26%  Similarity=0.373  Sum_probs=126.9

Q ss_pred             CCCCcceEEEEEcCCCCcHHHHHHHHHcCC--CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524          57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNT--FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG  134 (592)
Q Consensus        57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~~--f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~  134 (592)
                      ..-..-+||+|+|.||||||||+|.|++..  ++.+...||.|.....+.++|.++.+  +||+|.+++           
T Consensus       212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l--~DTAGiRet-----------  278 (454)
T COG0486         212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRL--VDTAGIRET-----------  278 (454)
T ss_pred             hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEE--EecCCcccC-----------
Confidence            334556999999999999999999999764  56889999999999999999966555  999999544           


Q ss_pred             CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524         135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI  214 (592)
Q Consensus       135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L  214 (592)
                        .+.+|+.|+.+++..                                  +..||.+++|+|.+.+.+-.+...+.   
T Consensus       279 --~d~VE~iGIeRs~~~----------------------------------i~~ADlvL~v~D~~~~~~~~d~~~~~---  319 (454)
T COG0486         279 --DDVVERIGIERAKKA----------------------------------IEEADLVLFVLDASQPLDKEDLALIE---  319 (454)
T ss_pred             --ccHHHHHHHHHHHHH----------------------------------HHhCCEEEEEEeCCCCCchhhHHHHH---
Confidence              345888899888774                                  88999999999999864333332211   


Q ss_pred             HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524         215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK  294 (592)
Q Consensus       215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk  294 (592)
                         ....+.|+++|.||+||..+..                                    .... +.....+++.+||+
T Consensus       320 ---~~~~~~~~i~v~NK~DL~~~~~------------------------------------~~~~-~~~~~~~~i~iSa~  359 (454)
T COG0486         320 ---LLPKKKPIIVVLNKADLVSKIE------------------------------------LESE-KLANGDAIISISAK  359 (454)
T ss_pred             ---hcccCCCEEEEEechhcccccc------------------------------------cchh-hccCCCceEEEEec
Confidence               1345789999999999987621                                    0001 11234468999999


Q ss_pred             CCccHHHHHHHHHHHHHHh
Q psy1524         295 DNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i~~~  313 (592)
                      +|+|+++|.+.+.+.+...
T Consensus       360 t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         360 TGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             CccCHHHHHHHHHHHHhhc
Confidence            9999999999998887433

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.72  E-value=1.1e-16  Score=176.12  Aligned_cols=169  Identities=16%  Similarity=0.119  Sum_probs=115.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ..+|+|||.+|||||||+|+|++... ..+|..||.+.....+.+++.  .+.||||||..++....             
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~--~f~laDtPGliegas~g-------------  223 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDT--RFTVADVPGLIPGASEG-------------  223 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCe--EEEEEECCCCccccchh-------------
Confidence            36899999999999999999997643 356777887776677777764  56679999982110000             


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc----CCHHHHHHHHHHHHH
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP----NSFEEIRLIRDHIFE  216 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~----~Sfe~l~~~l~~L~~  216 (592)
                                                         .......-..+.++|++|+|+|+++.    +.++++..+..+|..
T Consensus       224 -----------------------------------~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~  268 (500)
T PRK12296        224 -----------------------------------KGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAA  268 (500)
T ss_pred             -----------------------------------hHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHH
Confidence                                               00000111246789999999999863    456666666666655


Q ss_pred             hhc----------CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCC
Q psy1524         217 TKA----------STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWEN  286 (592)
Q Consensus       217 ~~~----------~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~  286 (592)
                      +..          ...+|+|||+||+|+.+.                               +.+.......+.  ....
T Consensus       269 y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da-------------------------------~el~e~l~~~l~--~~g~  315 (500)
T PRK12296        269 YAPALDGDLGLGDLAERPRLVVLNKIDVPDA-------------------------------RELAEFVRPELE--ARGW  315 (500)
T ss_pred             hhhcccccchhhhhcCCCEEEEEECccchhh-------------------------------HHHHHHHHHHHH--HcCC
Confidence            421          246899999999999754                               111111111222  2246


Q ss_pred             eEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524         287 GFVEASAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       287 ~~~EvSAktg~gVeeLf~~Li~~i~~~  313 (592)
                      ++++|||+++.||++++.+|.+.+...
T Consensus       316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~  342 (500)
T PRK12296        316 PVFEVSAASREGLRELSFALAELVEEA  342 (500)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            799999999999999999999988553

>cd01889 SelB_euk SelB subfamily

Probab=99.72  E-value=8.4e-17  Score=156.55  Aligned_cols=159  Identities=18%  Similarity=0.174  Sum_probs=100.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC----CCCCC----ccCceeeeEEEEEeeC------------CeEEEEEEEeCCCCCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN----TFSPK----YKRTIEEMHHEDFSMN------------GVHLKLDILDTSGEQS  122 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~----~f~~~----~~~Tt~d~~~~~v~vd------------g~~v~L~I~DT~G~~~  122 (592)
                      ++|+++|.+|||||||+++|+..    .+...    ...++.+.....+.++            +..+.++||||||+  
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~--   78 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGH--   78 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCc--
Confidence            58999999999999999999962    22211    1123333222223332            33567888999998  


Q ss_pred             CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC
Q psy1524         123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN  202 (592)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~  202 (592)
                                                                           ..+..........+|++++|+|+++..
T Consensus        79 -----------------------------------------------------~~~~~~~~~~~~~~d~vi~VvD~~~~~  105 (192)
T cd01889          79 -----------------------------------------------------ASLIRTIIGGAQIIDLMLLVVDATKGI  105 (192)
T ss_pred             -----------------------------------------------------HHHHHHHHHHHhhCCEEEEEEECCCCc
Confidence                                                                 222222223356789999999998865


Q ss_pred             CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHH-h
Q psy1524         203 SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVV-Q  281 (592)
Q Consensus       203 Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la-~  281 (592)
                      .......+.  +...   .+.|+++|+||+|+.....                             .....++..... .
T Consensus       106 ~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~-----------------------------~~~~~~~~~~~l~~  151 (192)
T cd01889         106 QTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEE-----------------------------RERKIEKMKKKLQK  151 (192)
T ss_pred             cHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHH-----------------------------HHHHHHHHHHHHHH
Confidence            544433222  1121   2579999999999874310                             011112222211 1


Q ss_pred             h-----cCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         282 V-----DWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       282 ~-----~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      .     ....+++++||++|.|++++++.+..++
T Consensus       152 ~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~  185 (192)
T cd01889         152 TLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI  185 (192)
T ss_pred             HHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence            0     2356799999999999999999999887

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.72  E-value=9.4e-17  Score=152.16  Aligned_cols=144  Identities=20%  Similarity=0.255  Sum_probs=95.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV  143 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~  143 (592)
                      +|+++|.+|||||||+|++.+..-..  ..|      ..+.++..    .+|||||+....                   
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~------~~v~~~~~----~~iDtpG~~~~~-------------------   51 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKT------QAVEFNDK----GDIDTPGEYFSH-------------------   51 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC--ccc------eEEEECCC----CcccCCccccCC-------------------
Confidence            79999999999999999987543111  111      12222222    259999981100                   


Q ss_pred             HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524         144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV  223 (592)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~  223 (592)
                                                     .+.+..+. ..+..||++|+|||+++..++..  .|+..+     ..++
T Consensus        52 -------------------------------~~~~~~~~-~~~~~ad~il~v~d~~~~~s~~~--~~~~~~-----~~~~   92 (158)
T PRK15467         52 -------------------------------PRWYHALI-TTLQDVDMLIYVHGANDPESRLP--AGLLDI-----GVSK   92 (158)
T ss_pred             -------------------------------HHHHHHHH-HHHhcCCEEEEEEeCCCcccccC--HHHHhc-----cCCC
Confidence                                           01122222 23788999999999999887632  333322     2367


Q ss_pred             CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcC-CCeEEEcccCCCccHHHH
Q psy1524         224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDW-ENGFVEASAKDNTNITQV  302 (592)
Q Consensus       224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~-~~~~~EvSAktg~gVeeL  302 (592)
                      |+++|+||+|+.+.                                  ..+....++.... ..++++|||++|+||+++
T Consensus        93 ~ii~v~nK~Dl~~~----------------------------------~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l  138 (158)
T PRK15467         93 RQIAVISKTDMPDA----------------------------------DVAATRKLLLETGFEEPIFELNSHDPQSVQQL  138 (158)
T ss_pred             CeEEEEEccccCcc----------------------------------cHHHHHHHHHHcCCCCCEEEEECCCccCHHHH
Confidence            99999999998543                                  1234444444222 358999999999999999


Q ss_pred             HHHHHHHHH
Q psy1524         303 FKELLVQAK  311 (592)
Q Consensus       303 f~~Li~~i~  311 (592)
                      |+.+.+.+.
T Consensus       139 ~~~l~~~~~  147 (158)
T PRK15467        139 VDYLASLTK  147 (158)
T ss_pred             HHHHHHhch
Confidence            999988773

>cd04163 Era Era subfamily

Probab=99.72  E-value=1.2e-16  Score=147.88  Aligned_cols=163  Identities=17%  Similarity=0.216  Sum_probs=102.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ..+|+++|.+|||||||+|+|++..+.  .....++.......  .....+.+.+|||+|......              
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~--------------   66 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI--YTDDDAQIIFVDTPGIHKPKK--------------   66 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE--EEcCCeEEEEEECCCCCcchH--------------
Confidence            578999999999999999999977543  22223333222222  223345677799999821100              


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                       ...+.+.......+..+|++++|+|+++..+.. ...+...+..   
T Consensus        67 ---------------------------------~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~---  109 (168)
T cd04163          67 ---------------------------------KLGERMVKAAWSALKDVDLVLFVVDASEPIGEG-DEFILELLKK---  109 (168)
T ss_pred             ---------------------------------HHHHHHHHHHHHHHHhCCEEEEEEECCCccCch-HHHHHHHHHH---
Confidence                                             000122333445688899999999999873221 1223333333   


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                       .+.|+++|+||+|+....                               ....+....+.......+++++||+++.|+
T Consensus       110 -~~~~~iiv~nK~Dl~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163         110 -SKTPVILVLNKIDLVKDK-------------------------------EDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             -hCCCEEEEEEchhccccH-------------------------------HHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence             268999999999987431                               111222333333233467999999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         300 TQVFKELLVQ  309 (592)
Q Consensus       300 eeLf~~Li~~  309 (592)
                      +++++.+.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.70  E-value=2.5e-16  Score=182.24  Aligned_cols=173  Identities=18%  Similarity=0.211  Sum_probs=120.1

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ..+||+|+|.+|||||||+|+|++..+  ...+.+|+.+.....+.+++..+.  ||||+|+......            
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~--liDTaG~~~~~~~------------  514 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWL--FIDTAGIKRRQHK------------  514 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEE--EEECCCcccCccc------------
Confidence            458999999999999999999998864  567778888887777888887665  5999998211000            


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHH-HhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA-LSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~-~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                       ....+.|..+.. .+++.+|++|+|+|+++..++.++.. +..+.+ 
T Consensus       515 ---------------------------------~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i-~~~~~~-  559 (712)
T PRK09518        515 ---------------------------------LTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKV-MSMAVD-  559 (712)
T ss_pred             ---------------------------------chhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH-
Confidence                                             001134444443 35789999999999999998887753 333333 


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                         .++|+|+|+||+|+.+...                             ......+...........+++++||++|.
T Consensus       560 ---~~~piIiV~NK~DL~~~~~-----------------------------~~~~~~~~~~~l~~~~~~~ii~iSAktg~  607 (712)
T PRK09518        560 ---AGRALVLVFNKWDLMDEFR-----------------------------RQRLERLWKTEFDRVTWARRVNLSAKTGW  607 (712)
T ss_pred             ---cCCCEEEEEEchhcCChhH-----------------------------HHHHHHHHHHhccCCCCCCEEEEECCCCC
Confidence               3689999999999975310                             00000111111111223467899999999


Q ss_pred             cHHHHHHHHHHHHHHhc
Q psy1524         298 NITQVFKELLVQAKVKY  314 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~~  314 (592)
                      ||+++|+.+.+.+....
T Consensus       608 gv~~L~~~i~~~~~~~~  624 (712)
T PRK09518        608 HTNRLAPAMQEALESWD  624 (712)
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999886533

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.70  E-value=3.5e-16  Score=171.03  Aligned_cols=158  Identities=18%  Similarity=0.191  Sum_probs=109.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ++|+|+|.+|||||||+|+|++...  ...+.+++.+.....+.+++  ..+.||||+|+.....               
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~---------------   64 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDD---------------   64 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcch---------------
Confidence            5899999999999999999997753  45666677777777777877  5667799999921000               


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                      .....+......++..+|++|+|+|+++..+..+.. ....+..    
T Consensus        65 --------------------------------~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~-~~~~l~~----  107 (435)
T PRK00093         65 --------------------------------GFEKQIREQAELAIEEADVILFVVDGRAGLTPADEE-IAKILRK----  107 (435)
T ss_pred             --------------------------------hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHH-HHHHHHH----
Confidence                                            000223444556788999999999998865544322 2222333    


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      .+.|+|+|+||+|+...                                   .+....+.. .....++++||++|.||+
T Consensus       108 ~~~piilv~NK~D~~~~-----------------------------------~~~~~~~~~-lg~~~~~~iSa~~g~gv~  151 (435)
T PRK00093        108 SNKPVILVVNKVDGPDE-----------------------------------EADAYEFYS-LGLGEPYPISAEHGRGIG  151 (435)
T ss_pred             cCCcEEEEEECccCccc-----------------------------------hhhHHHHHh-cCCCCCEEEEeeCCCCHH
Confidence            27899999999996532                                   011222222 122237999999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         301 QVFKELLVQA  310 (592)
Q Consensus       301 eLf~~Li~~i  310 (592)
                      ++|+.++...
T Consensus       152 ~l~~~I~~~~  161 (435)
T PRK00093        152 DLLDAILEEL  161 (435)
T ss_pred             HHHHHHHhhC
Confidence            9999998743

>KOG0070|consensus

Probab=99.70  E-value=1.4e-16  Score=151.97  Aligned_cols=161  Identities=14%  Similarity=0.211  Sum_probs=125.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ....+|+++|-.|+||||++.+|..+++... .||++-.. ..+.+.  .+.+++||..|+                   
T Consensus        15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnV-E~v~yk--n~~f~vWDvGGq-------------------   71 (181)
T KOG0070|consen   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNV-ETVEYK--NISFTVWDVGGQ-------------------   71 (181)
T ss_pred             cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccce-eEEEEc--ceEEEEEecCCC-------------------
Confidence            4568999999999999999999998888765 88888433 233444  477788999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          ++++.++..|+.+.+++|+|+|.+|++.+.+++..+..+.....
T Consensus        72 ------------------------------------~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~  115 (181)
T KOG0070|consen   72 ------------------------------------EKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPE  115 (181)
T ss_pred             ------------------------------------cccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc
Confidence                                                89999999999999999999999999999998887777766544


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHH---Hhhc-CCCeEEEcccCC
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESV---VQVD-WENGFVEASAKD  295 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~l---a~~~-~~~~~~EvSAkt  295 (592)
                      ....|+++.+||.|+...                                 .+..+....   .... ..--+-.|+|.+
T Consensus       116 l~~~~llv~aNKqD~~~a---------------------------------ls~~ei~~~L~l~~l~~~~w~iq~~~a~~  162 (181)
T KOG0070|consen  116 LRNAPLLVFANKQDLPGA---------------------------------LSAAEITNKLGLHSLRSRNWHIQSTCAIS  162 (181)
T ss_pred             cCCceEEEEechhhcccc---------------------------------CCHHHHHhHhhhhccCCCCcEEeeccccc
Confidence            568999999999999865                                 111222211   1111 122256799999


Q ss_pred             CccHHHHHHHHHHHHHH
Q psy1524         296 NTNITQVFKELLVQAKV  312 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~~  312 (592)
                      |+|+.|.++++...+..
T Consensus       163 G~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  163 GEGLYEGLDWLSNNLKK  179 (181)
T ss_pred             cccHHHHHHHHHHHHhc
Confidence            99999999999998843

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.69  E-value=5.3e-16  Score=169.63  Aligned_cols=172  Identities=22%  Similarity=0.305  Sum_probs=116.0

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCC--CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNT--FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~--f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ...++|+|+|.+|||||||+|+|++..  ......+|+.+.....+..++..+.  +|||+|........          
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~--lvDT~G~~~~~~~~----------  238 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYT--LIDTAGIRRKGKVT----------  238 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEE--EEECCCCCCCcchh----------
Confidence            457999999999999999999999764  3455666777776666667776654  59999982211000          


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHH-HhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA-LSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~-~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                         ...+.|..+.. .++..+|++|+|+|++++.+..+.. ++..+.+
T Consensus       239 -----------------------------------~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~  282 (435)
T PRK00093        239 -----------------------------------EGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE  282 (435)
T ss_pred             -----------------------------------hHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH
Confidence                                               01133433332 3688999999999999988877654 3333322


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                          .++|+|+|+||+|+.+....                            ..+. ++...........+++++||++|
T Consensus       283 ----~~~~~ivv~NK~Dl~~~~~~----------------------------~~~~-~~~~~~l~~~~~~~i~~~SA~~~  329 (435)
T PRK00093        283 ----AGRALVIVVNKWDLVDEKTM----------------------------EEFK-KELRRRLPFLDYAPIVFISALTG  329 (435)
T ss_pred             ----cCCcEEEEEECccCCCHHHH----------------------------HHHH-HHHHHhcccccCCCEEEEeCCCC
Confidence                36899999999998743100                            0111 11111112234568999999999


Q ss_pred             ccHHHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQAKV  312 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~~  312 (592)
                      .||+++|+.+.+....
T Consensus       330 ~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        330 QGVDKLLEAIDEAYEN  345 (435)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999887644

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.69  E-value=5.1e-17  Score=160.27  Aligned_cols=119  Identities=13%  Similarity=0.264  Sum_probs=90.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV  143 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~  143 (592)
                      +|+|+|++|||||||+++|..+.+...+..+........+...+..+.+.||||||+                       
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~-----------------------   58 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGH-----------------------   58 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCC-----------------------
Confidence            699999999999999999999888766554433222222222244567888999999                       


Q ss_pred             HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcC-CcEEEEEeCCCc-CCHHHHHHHHHHHHHhh--c
Q psy1524         144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSA-DAFILVYAIDDP-NSFEEIRLIRDHIFETK--A  219 (592)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~A-D~iIlVyDvsd~-~Sfe~l~~~l~~L~~~~--~  219 (592)
                                                      ++++.+...+++.+ +++|+|+|+++. .++..+..++..+....  .
T Consensus        59 --------------------------------~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~  106 (203)
T cd04105          59 --------------------------------PKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKV  106 (203)
T ss_pred             --------------------------------HHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhc
Confidence                                            77777777888898 999999999997 67888777766554321  2


Q ss_pred             CCCCCEEEEEeCCCCccc
Q psy1524         220 STAVPIVVVGNKSDLADE  237 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~  237 (592)
                      ...+|+++|+||+|+...
T Consensus       107 ~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105         107 KNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             cCCCCEEEEecchhhccc
Confidence            358999999999998754

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.69  E-value=5.2e-16  Score=175.69  Aligned_cols=156  Identities=17%  Similarity=0.261  Sum_probs=111.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCC-------CCCCccCce------e-eeEEEEEee-----CCeEEEEEEEeCCCCCC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNT-------FSPKYKRTI------E-EMHHEDFSM-----NGVHLKLDILDTSGEQS  122 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~-------f~~~~~~Tt------~-d~~~~~v~v-----dg~~v~L~I~DT~G~~~  122 (592)
                      .-+|+|+|..++|||||+++|+...       +...+..+.      + +.....+.+     ++..+.++||||||+  
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~--   80 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH--   80 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCc--
Confidence            3489999999999999999999542       222222221      1 122222222     567789999999999  


Q ss_pred             CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC
Q psy1524         123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN  202 (592)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~  202 (592)
                                                                           +.|......++..||++|+|||+++..
T Consensus        81 -----------------------------------------------------~dF~~~v~~~l~~aD~aILVvDat~g~  107 (595)
T TIGR01393        81 -----------------------------------------------------VDFSYEVSRSLAACEGALLLVDAAQGI  107 (595)
T ss_pred             -----------------------------------------------------HHHHHHHHHHHHhCCEEEEEecCCCCC
Confidence                                                                 778878888999999999999999988


Q ss_pred             CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh
Q psy1524         203 SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV  282 (592)
Q Consensus       203 Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~  282 (592)
                      ++.....|+..+.     .++|+|+|+||+|+....                                 ..+...++.+.
T Consensus       108 ~~qt~~~~~~~~~-----~~ipiIiViNKiDl~~~~---------------------------------~~~~~~el~~~  149 (595)
T TIGR01393       108 EAQTLANVYLALE-----NDLEIIPVINKIDLPSAD---------------------------------PERVKKEIEEV  149 (595)
T ss_pred             CHhHHHHHHHHHH-----cCCCEEEEEECcCCCccC---------------------------------HHHHHHHHHHH
Confidence            8877776655432     368999999999986431                                 01111222221


Q ss_pred             cC--CCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         283 DW--ENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       283 ~~--~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      ..  ...++++||++|.||+++|+.+++.+
T Consensus       150 lg~~~~~vi~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       150 IGLDASEAILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             hCCCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence            11  12489999999999999999998876

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.69  E-value=6.5e-16  Score=166.67  Aligned_cols=170  Identities=18%  Similarity=0.191  Sum_probs=116.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      ..|+|||.+|||||||+|+|++... +..+..||.......+..++. ..+.|+||||..+.....              
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~--------------  224 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEG--------------  224 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccch--------------
Confidence            3799999999999999999996643 467788888777666666542 234569999982110000              


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCC---CcCCHHHHHHHHHHHHHhh
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAID---DPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvs---d~~Sfe~l~~~l~~L~~~~  218 (592)
                       .+                                .-..+. ..+.++|++|+|+|++   +...++++..|+.++..+.
T Consensus       225 -~~--------------------------------Lg~~~l-~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~  270 (390)
T PRK12298        225 -AG--------------------------------LGIRFL-KHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYS  270 (390)
T ss_pred             -hh--------------------------------HHHHHH-HHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhh
Confidence             00                                000111 2478899999999998   5667888888888887642


Q ss_pred             c-CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc-CCCeEEEcccCCC
Q psy1524         219 A-STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD-WENGFVEASAKDN  296 (592)
Q Consensus       219 ~-~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~-~~~~~~EvSAktg  296 (592)
                      . ..+.|+|||+||+|+....                               .+ .+....+.+.. ....++.+||+++
T Consensus       271 ~~L~~kP~IlVlNKiDl~~~~-------------------------------el-~~~l~~l~~~~~~~~~Vi~ISA~tg  318 (390)
T PRK12298        271 PKLAEKPRWLVFNKIDLLDEE-------------------------------EA-EERAKAIVEALGWEGPVYLISAASG  318 (390)
T ss_pred             hhhcCCCEEEEEeCCccCChH-------------------------------HH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence            1 1368999999999986541                               11 12233333321 2236899999999


Q ss_pred             ccHHHHHHHHHHHHHHh
Q psy1524         297 TNITQVFKELLVQAKVK  313 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~~~  313 (592)
                      .||+++++.|.+.+...
T Consensus       319 ~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        319 LGVKELCWDLMTFIEEN  335 (390)
T ss_pred             cCHHHHHHHHHHHhhhC
Confidence            99999999999887543

>KOG1673|consensus

Probab=99.69  E-value=5e-17  Score=150.16  Aligned_cols=172  Identities=19%  Similarity=0.353  Sum_probs=141.7

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      .+.-.+||.++|++.+|||||+-.++++.+.+.+..+.+ .+..+++.+.+..+.+.|||..|+                
T Consensus        16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~----------------   79 (205)
T KOG1673|consen   16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQ----------------   79 (205)
T ss_pred             ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCc----------------
Confidence            345679999999999999999999999999888888888 788899999999999999999999                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             +++..+.+....++-+|+|+||.+.++++..+..|+.+.+.
T Consensus        80 ---------------------------------------~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~  120 (205)
T KOG1673|consen   80 ---------------------------------------REFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARG  120 (205)
T ss_pred             ---------------------------------------HhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhc
Confidence                                                   78888888889999999999999999999999999999877


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      . ....+| |+||+|.|+.-.     ++++.                     ..-...++..+++ ..+...|.||+..+
T Consensus       121 ~-NktAiP-ilvGTKyD~fi~-----lp~e~---------------------Q~~I~~qar~YAk-~mnAsL~F~Sts~s  171 (205)
T KOG1673|consen  121 L-NKTAIP-ILVGTKYDLFID-----LPPEL---------------------QETISRQARKYAK-VMNASLFFCSTSHS  171 (205)
T ss_pred             c-CCccce-EEeccchHhhhc-----CCHHH---------------------HHHHHHHHHHHHH-HhCCcEEEeecccc
Confidence            6 344556 568999998643     11000                     1111245667776 55667899999999


Q ss_pred             ccHHHHHHHHHHHHHHh
Q psy1524         297 TNITQVFKELLVQAKVK  313 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~~~  313 (592)
                      .||..+|..++.++...
T Consensus       172 INv~KIFK~vlAklFnL  188 (205)
T KOG1673|consen  172 INVQKIFKIVLAKLFNL  188 (205)
T ss_pred             ccHHHHHHHHHHHHhCC
Confidence            99999999998887543

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.69  E-value=6.6e-16  Score=149.48  Aligned_cols=170  Identities=14%  Similarity=0.199  Sum_probs=106.4

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeE-EEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMH-HEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~-~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .+..++|+|+|.+|||||||+++|++..+...+.++.+... ...+.+   ...+.||||||+.....            
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~------------   85 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKV------------   85 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCC------------
Confidence            34678999999999999999999998776544444443211 111122   25677899999721100            


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcC---CcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSA---DAFILVYAIDDPNSFEEIRLIRDHI  214 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~A---D~iIlVyDvsd~~Sfe~l~~~l~~L  214 (592)
                                                       .....+++..+...++..+   +++++|+|++++.+..... +...+
T Consensus        86 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-i~~~l  131 (196)
T PRK00454         86 ---------------------------------SKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQ-MIEWL  131 (196)
T ss_pred             ---------------------------------CchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHH-HHHHH
Confidence                                             0001134555555566544   6788999988765544321 22222


Q ss_pred             HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524         215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK  294 (592)
Q Consensus       215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk  294 (592)
                      .    ..++|+++|+||+|+.....                             ++...+.+....... ...++++||+
T Consensus       132 ~----~~~~~~iiv~nK~Dl~~~~~-----------------------------~~~~~~~i~~~l~~~-~~~~~~~Sa~  177 (196)
T PRK00454        132 K----EYGIPVLIVLTKADKLKKGE-----------------------------RKKQLKKVRKALKFG-DDEVILFSSL  177 (196)
T ss_pred             H----HcCCcEEEEEECcccCCHHH-----------------------------HHHHHHHHHHHHHhc-CCceEEEEcC
Confidence            2    23689999999999875411                             111112233332211 5679999999


Q ss_pred             CCccHHHHHHHHHHHHH
Q psy1524         295 DNTNITQVFKELLVQAK  311 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i~  311 (592)
                      +|.|++++++.|.+.+.
T Consensus       178 ~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        178 KKQGIDELRAAIAKWLA  194 (196)
T ss_pred             CCCCHHHHHHHHHHHhc
Confidence            99999999999987763

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.69  E-value=3.4e-16  Score=150.62  Aligned_cols=160  Identities=16%  Similarity=0.210  Sum_probs=98.7

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceee-eEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEE-MHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d-~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ....++|+|+|++|||||||+|+|++..+...+.++.+. .....+.+++   .+.||||||.......           
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~-----------   80 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVS-----------   80 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCC-----------
Confidence            356789999999999999999999987654333333331 1122233343   4677999998221000           


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhc---CCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISS---ADAFILVYAIDDPNSFEEIRLIRDHI  214 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~---AD~iIlVyDvsd~~Sfe~l~~~l~~L  214 (592)
                                                        ....+.+..+...+++.   +|++|+|+|++++-+..+.. ++..+
T Consensus        81 ----------------------------------~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~  125 (179)
T TIGR03598        81 ----------------------------------KEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWL  125 (179)
T ss_pred             ----------------------------------hhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHH
Confidence                                              00013445555555554   57999999998876665553 23333


Q ss_pred             HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc-CCCeEEEccc
Q psy1524         215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD-WENGFVEASA  293 (592)
Q Consensus       215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~-~~~~~~EvSA  293 (592)
                      ..    .+.|+++|+||+|+.....                             .....++.+...... ....+|++||
T Consensus       126 ~~----~~~pviiv~nK~D~~~~~~-----------------------------~~~~~~~i~~~l~~~~~~~~v~~~Sa  172 (179)
T TIGR03598       126 RE----RGIPVLIVLTKADKLKKSE-----------------------------LNKQLKKIKKALKKDADDPSVQLFSS  172 (179)
T ss_pred             HH----cCCCEEEEEECcccCCHHH-----------------------------HHHHHHHHHHHHhhccCCCceEEEEC
Confidence            22    3689999999999875411                             111123333333322 2347999999


Q ss_pred             CCCccHH
Q psy1524         294 KDNTNIT  300 (592)
Q Consensus       294 ktg~gVe  300 (592)
                      ++|+||+
T Consensus       173 ~~g~gi~  179 (179)
T TIGR03598       173 LKKTGID  179 (179)
T ss_pred             CCCCCCC
Confidence            9999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.68  E-value=7.6e-16  Score=164.91  Aligned_cols=172  Identities=24%  Similarity=0.310  Sum_probs=126.7

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCC--CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNT--FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~--f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ...+||+|+|.||||||||+|++++.+  .+.+...||.|.....++.+++.+.+  +||+|.+......          
T Consensus       176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~l--iDTAGiRrk~ki~----------  243 (444)
T COG1160         176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVL--IDTAGIRRKGKIT----------  243 (444)
T ss_pred             CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEE--EECCCCCcccccc----------
Confidence            467999999999999999999999775  45788899999999999999988877  9999994322211          


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHH-hhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRAL-SISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~-~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                         .+.|.|+..+.. .+..||++++|+|++.+-+-.+.. ....+  
T Consensus       244 -----------------------------------e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i--  285 (444)
T COG1160         244 -----------------------------------ESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR-IAGLI--  285 (444)
T ss_pred             -----------------------------------cceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH-HHHHH--
Confidence                                               112555555533 588999999999999887655443 22222  


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHH----HHHHhhcCCCeEEEcc
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTT----ESVVQVDWENGFVEAS  292 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~----~~la~~~~~~~~~EvS  292 (592)
                        .....++|+|.||+|+.+.+                               ..+.++.    ..........+.+.+|
T Consensus       286 --~~~g~~~vIvvNKWDl~~~~-------------------------------~~~~~~~k~~i~~~l~~l~~a~i~~iS  332 (444)
T COG1160         286 --EEAGRGIVIVVNKWDLVEED-------------------------------EATMEEFKKKLRRKLPFLDFAPIVFIS  332 (444)
T ss_pred             --HHcCCCeEEEEEccccCCch-------------------------------hhHHHHHHHHHHHHhccccCCeEEEEE
Confidence              33578999999999998751                               1222222    2222334456789999


Q ss_pred             cCCCccHHHHHHHHHHHHHHhc
Q psy1524         293 AKDNTNITQVFKELLVQAKVKY  314 (592)
Q Consensus       293 Aktg~gVeeLf~~Li~~i~~~~  314 (592)
                      |++|.++.++|+.+.+......
T Consensus       333 A~~~~~i~~l~~~i~~~~~~~~  354 (444)
T COG1160         333 ALTGQGLDKLFEAIKEIYECAT  354 (444)
T ss_pred             ecCCCChHHHHHHHHHHHHHhc
Confidence            9999999999999988775543

>KOG0075|consensus

Probab=99.68  E-value=7.1e-17  Score=147.96  Aligned_cols=162  Identities=19%  Similarity=0.274  Sum_probs=126.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      .+.+.++|-.++|||||+|....+.+.+...||.+-...   .+....+.+.+||.+|+                     
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq---------------------   75 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQ---------------------   75 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCC---------------------
Confidence            468999999999999999999999999988999884332   33444566677999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        .+|++|+..|+++++++++|+|+.|++..+....-+..|.....-.
T Consensus        76 ----------------------------------~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~  121 (186)
T KOG0075|consen   76 ----------------------------------PRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLT  121 (186)
T ss_pred             ----------------------------------ccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhc
Confidence                                              8999999999999999999999999988887777666666655567


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|+++.|||.|+...-...                            .+....+.. .-....+.+|.+||+...|++.
T Consensus       122 gip~LVLGnK~d~~~AL~~~----------------------------~li~rmgL~-sitdREvcC~siScke~~Nid~  172 (186)
T KOG0075|consen  122 GIPLLVLGNKIDLPGALSKI----------------------------ALIERMGLS-SITDREVCCFSISCKEKVNIDI  172 (186)
T ss_pred             CCcEEEecccccCcccccHH----------------------------HHHHHhCcc-ccccceEEEEEEEEcCCccHHH
Confidence            89999999999998651110                            000000000 0012345599999999999999


Q ss_pred             HHHHHHHHH
Q psy1524         302 VFKELLVQA  310 (592)
Q Consensus       302 Lf~~Li~~i  310 (592)
                      +.+++++.-
T Consensus       173 ~~~Wli~hs  181 (186)
T KOG0075|consen  173 TLDWLIEHS  181 (186)
T ss_pred             HHHHHHHHh
Confidence            999999875

>KOG0096|consensus

Probab=99.67  E-value=7.9e-17  Score=153.52  Aligned_cols=163  Identities=22%  Similarity=0.364  Sum_probs=135.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ...+|++++|+.|.||||+++|...+.|..+|.+|++ +.....+..+...+.+..|||+|+                  
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagq------------------   69 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQ------------------   69 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccc------------------
Confidence            4579999999999999999999999999999999999 555555555555799999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           |.+..+...|+-.+.+.|++||++..-++.++..|+..+.+. 
T Consensus        70 -------------------------------------Ek~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv-  111 (216)
T KOG0096|consen   70 -------------------------------------EKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRV-  111 (216)
T ss_pred             -------------------------------------eeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHH-
Confidence                                                 778888888888999999999999999999999999999886 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                       +.++|||++|||.|.....  +                         ....|+      +-+ ..++.|+++||+++.|
T Consensus       112 -~~NiPiv~cGNKvDi~~r~--~-------------------------k~k~v~------~~r-kknl~y~~iSaksn~N  156 (216)
T KOG0096|consen  112 -RENIPIVLCGNKVDIKARK--V-------------------------KAKPVS------FHR-KKNLQYYEISAKSNYN  156 (216)
T ss_pred             -hcCCCeeeeccceeccccc--c-------------------------ccccce------eee-cccceeEEeecccccc
Confidence             4679999999999986541  0                         001111      112 4577899999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy1524         299 ITQVFKELLVQAKVK  313 (592)
Q Consensus       299 VeeLf~~Li~~i~~~  313 (592)
                      .+.-|.++.+.+...
T Consensus       157 fekPFl~LarKl~G~  171 (216)
T KOG0096|consen  157 FERPFLWLARKLTGD  171 (216)
T ss_pred             cccchHHHhhhhcCC
Confidence            999999999988443

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.67  E-value=9.8e-16  Score=167.06  Aligned_cols=158  Identities=18%  Similarity=0.231  Sum_probs=111.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +|+|+|.+|||||||+|+|++...  ...+.+++.+.....+..++..  +.||||||.....                 
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~--~~liDTpG~~~~~-----------------   61 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGRE--FILIDTGGIEEDD-----------------   61 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeE--EEEEECCCCCCcc-----------------
Confidence            589999999999999999998753  4566677777777777777765  5669999982100                 


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                    ...++.+......++..||++|+|+|+++..+..+. .+...+.+    .
T Consensus        62 ------------------------------~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~-~i~~~l~~----~  106 (429)
T TIGR03594        62 ------------------------------DGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDE-EIAKWLRK----S  106 (429)
T ss_pred             ------------------------------hhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH----h
Confidence                                          000134555566678999999999999887655442 23333433    3


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|+++|+||+|+....                               .    ....+.+ .....++++||++|.|+++
T Consensus       107 ~~piilVvNK~D~~~~~-------------------------------~----~~~~~~~-lg~~~~~~vSa~~g~gv~~  150 (429)
T TIGR03594       107 GKPVILVANKIDGKKED-------------------------------A----VAAEFYS-LGFGEPIPISAEHGRGIGD  150 (429)
T ss_pred             CCCEEEEEECccCCccc-------------------------------c----cHHHHHh-cCCCCeEEEeCCcCCChHH
Confidence            68999999999987541                               1    1112222 2233689999999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         302 VFKELLVQAK  311 (592)
Q Consensus       302 Lf~~Li~~i~  311 (592)
                      +++.+.+.+.
T Consensus       151 ll~~i~~~l~  160 (429)
T TIGR03594       151 LLDAILELLP  160 (429)
T ss_pred             HHHHHHHhcC
Confidence            9999988763

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.66  E-value=2.6e-15  Score=169.51  Aligned_cols=156  Identities=26%  Similarity=0.316  Sum_probs=108.8

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ..+..+|+|+|..++|||||+++|.+..+...+.+++. +.....+.+++.. .+.||||||+                 
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGh-----------------  145 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGH-----------------  145 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCC-----------------
Confidence            34568999999999999999999998887765544443 3333444554331 5667999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            +.|..++..++..+|++|+|||+++...-..... +..+   
T Consensus       146 --------------------------------------e~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~-i~~~---  183 (587)
T TIGR00487       146 --------------------------------------EAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEA-ISHA---  183 (587)
T ss_pred             --------------------------------------cchhhHHHhhhccCCEEEEEEECCCCCCHhHHHH-HHHH---
Confidence                                                  7888888888999999999999987543222221 2222   


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh------hc--CCCeEE
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ------VD--WENGFV  289 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~------~~--~~~~~~  289 (592)
                       ...++|+|+++||+|+...+                                  .+.....+.      ..  ...+++
T Consensus       184 -~~~~vPiIVviNKiDl~~~~----------------------------------~e~v~~~L~~~g~~~~~~~~~~~~v  228 (587)
T TIGR00487       184 -KAANVPIIVAINKIDKPEAN----------------------------------PDRVKQELSEYGLVPEDWGGDTIFV  228 (587)
T ss_pred             -HHcCCCEEEEEECcccccCC----------------------------------HHHHHHHHHHhhhhHHhcCCCceEE
Confidence             22478999999999986431                                  111111111      01  135799


Q ss_pred             EcccCCCccHHHHHHHHHHH
Q psy1524         290 EASAKDNTNITQVFKELLVQ  309 (592)
Q Consensus       290 EvSAktg~gVeeLf~~Li~~  309 (592)
                      ++||++|.||+++|+.++..
T Consensus       229 ~iSAktGeGI~eLl~~I~~~  248 (587)
T TIGR00487       229 PVSALTGDGIDELLDMILLQ  248 (587)
T ss_pred             EEECCCCCChHHHHHhhhhh
Confidence            99999999999999998743

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd00880 Era_like Era (E

Probab=99.65  E-value=2.2e-15  Score=137.30  Aligned_cols=158  Identities=19%  Similarity=0.207  Sum_probs=103.5

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHH
Q psy1524          67 VMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVC  144 (592)
Q Consensus        67 IvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~  144 (592)
                      |+|.+|+|||||++++++..+.  ....+++.+........+. ...+.+|||+|+......                  
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~------------------   61 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGL------------------   61 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccc------------------
Confidence            5899999999999999976443  2333444444444433331 356777999998221000                  


Q ss_pred             HHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCC
Q psy1524         145 LRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVP  224 (592)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~P  224 (592)
                                                    ...+......++..+|++++|+|+++..+..... +....    ...+.|
T Consensus        62 ------------------------------~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~----~~~~~~  106 (163)
T cd00880          62 ------------------------------GREREELARRVLERADLILFVVDADLRADEEEEK-LLELL----RERGKP  106 (163)
T ss_pred             ------------------------------hhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHH----HhcCCe
Confidence                                          0111234445678999999999999988877665 33333    235789


Q ss_pred             EEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChH--HHHHHHhhcCCCeEEEcccCCCccHHHH
Q psy1524         225 IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYD--TTESVVQVDWENGFVEASAKDNTNITQV  302 (592)
Q Consensus       225 IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~e--e~~~la~~~~~~~~~EvSAktg~gVeeL  302 (592)
                      +++|+||+|+.....                               ....  ............+++++||+++.|++++
T Consensus       107 ~ivv~nK~D~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880         107 VLLVLNKIDLLPEEE-------------------------------EEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEEEccccCChhh-------------------------------HHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            999999999876511                               1100  0111222345678999999999999999


Q ss_pred             HHHHHHH
Q psy1524         303 FKELLVQ  309 (592)
Q Consensus       303 f~~Li~~  309 (592)
                      ++.+.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9998765

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.64  E-value=6.3e-15  Score=148.61  Aligned_cols=55  Identities=25%  Similarity=0.405  Sum_probs=44.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC-CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNT-FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~-f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      +|+|+|++|||||||+|+|++.. ....+..|+.+.....+.+++.  .+++|||||+
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~--~i~l~DtpG~   57 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGA--KIQLLDLPGI   57 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCe--EEEEEECCCc
Confidence            79999999999999999999765 3456666776666677777774  5666999998

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.64  E-value=2.6e-15  Score=160.80  Aligned_cols=159  Identities=19%  Similarity=0.193  Sum_probs=115.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC--CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNT--FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~--f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ..|+|||.||||||||+|||++..  .++++..+|.|.......+.+..  +.++||+|..+...            ..+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~------------~~l   69 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDE------------DEL   69 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCc------------hHH
Confidence            589999999999999999999774  45899999999888888888876  45599999932210            000


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                        +..........+..||++|||+|....-+-++-. ....|+    .
T Consensus        70 ----------------------------------~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~-ia~~Lr----~  110 (444)
T COG1160          70 ----------------------------------QELIREQALIAIEEADVILFVVDGREGITPADEE-IAKILR----R  110 (444)
T ss_pred             ----------------------------------HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHH----h
Confidence                                              0222233344688999999999998755543322 223333    2


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      .++|+|+|+||+|-...                                   .+.+..+.. ......+.+||.+|.|+.
T Consensus       111 ~~kpviLvvNK~D~~~~-----------------------------------e~~~~efys-lG~g~~~~ISA~Hg~Gi~  154 (444)
T COG1160         111 SKKPVILVVNKIDNLKA-----------------------------------EELAYEFYS-LGFGEPVPISAEHGRGIG  154 (444)
T ss_pred             cCCCEEEEEEcccCchh-----------------------------------hhhHHHHHh-cCCCCceEeehhhccCHH
Confidence            46899999999997633                                   123444544 334458899999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         301 QVFKELLVQA  310 (592)
Q Consensus       301 eLf~~Li~~i  310 (592)
                      +|++++++.+
T Consensus       155 dLld~v~~~l  164 (444)
T COG1160         155 DLLDAVLELL  164 (444)
T ss_pred             HHHHHHHhhc
Confidence            9999999987

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.64  E-value=5.3e-15  Score=171.22  Aligned_cols=162  Identities=19%  Similarity=0.209  Sum_probs=109.7

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ...+|+|+|.+|||||||+|+|++...  ......++.+........++..  +.+|||+|+.....             
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~--~~liDT~G~~~~~~-------------  338 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTD--FKLVDTGGWEADVE-------------  338 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEE--EEEEeCCCcCCCCc-------------
Confidence            357899999999999999999997653  3555555556666666666654  55699999821000             


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                        .....+......++..||++|+|+|+++.-+..+ ..|...+..  
T Consensus       339 ----------------------------------~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~--  381 (712)
T PRK09518        339 ----------------------------------GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR--  381 (712)
T ss_pred             ----------------------------------cHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh--
Confidence                                              0002344455667899999999999987533222 234444433  


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                        .++|+|+|+||+|+....                                   .....+...... ..++|||++|.|
T Consensus       382 --~~~pvIlV~NK~D~~~~~-----------------------------------~~~~~~~~lg~~-~~~~iSA~~g~G  423 (712)
T PRK09518        382 --AGKPVVLAVNKIDDQASE-----------------------------------YDAAEFWKLGLG-EPYPISAMHGRG  423 (712)
T ss_pred             --cCCCEEEEEECcccccch-----------------------------------hhHHHHHHcCCC-CeEEEECCCCCC
Confidence              478999999999985430                                   111222222223 357899999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQAKV  312 (592)
Q Consensus       299 VeeLf~~Li~~i~~  312 (592)
                      |+++|+.+++.+..
T Consensus       424 I~eLl~~i~~~l~~  437 (712)
T PRK09518        424 VGDLLDEALDSLKV  437 (712)
T ss_pred             chHHHHHHHHhccc
Confidence            99999999988744

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.64  E-value=4.9e-15  Score=169.92  Aligned_cols=157  Identities=25%  Similarity=0.365  Sum_probs=110.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee---eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE---EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~---d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      .+..+|+|+|..++|||||+++|....+.....+++.   ..+...+..++..+.+.||||||+                
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh----------------  305 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH----------------  305 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcH----------------
Confidence            4667999999999999999999998777644333332   223333334455577888999999                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             +.|..++..++..+|++|+|+|+++.........+ ..+  
T Consensus       306 ---------------------------------------e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I-~~~--  343 (742)
T CHL00189        306 ---------------------------------------EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAI-NYI--  343 (742)
T ss_pred             ---------------------------------------HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHH-HHH--
Confidence                                                   88999999999999999999999885433222211 222  


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHH-HH------Hh-hcCCCeE
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTE-SV------VQ-VDWENGF  288 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~-~l------a~-~~~~~~~  288 (592)
                        ...++|+|+|+||+|+...+                                  .++.. .+      .. .....++
T Consensus       344 --k~~~iPiIVViNKiDl~~~~----------------------------------~e~v~~eL~~~~ll~e~~g~~vpv  387 (742)
T CHL00189        344 --QAANVPIIVAINKIDKANAN----------------------------------TERIKQQLAKYNLIPEKWGGDTPM  387 (742)
T ss_pred             --HhcCceEEEEEECCCccccC----------------------------------HHHHHHHHHHhccchHhhCCCceE
Confidence              22478999999999986531                                  01111 11      11 0123679


Q ss_pred             EEcccCCCccHHHHHHHHHHHH
Q psy1524         289 VEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       289 ~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      +++||++|.||+++|+.++..+
T Consensus       388 v~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        388 IPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             EEEECCCCCCHHHHHHhhhhhh
Confidence            9999999999999999987764

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.63  E-value=3.5e-15  Score=168.94  Aligned_cols=151  Identities=16%  Similarity=0.216  Sum_probs=103.5

Q ss_pred             cCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHH
Q psy1524          69 GGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRR  147 (592)
Q Consensus        69 G~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~  147 (592)
                      |++|||||||+|+|++..+ ..++..++.+.....+..++.+  +++|||||+.+....                     
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~--i~lvDtPG~~~~~~~---------------------   57 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGED--IEIVDLPGIYSLTTF---------------------   57 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeE--EEEEECCCccccCcc---------------------
Confidence            8999999999999998766 3556666667777777777755  567999998210000                     


Q ss_pred             hhccCCccccccccCcchhhhccccccCcchhHHHHHhh--hcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCE
Q psy1524         148 ALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSI--SSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI  225 (592)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~--~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PI  225 (592)
                                               +. +  ..+...++  ..+|++++|+|+++.+.   ...+..++.+    .++|+
T Consensus        58 -------------------------s~-~--e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~~----~~~Pi  102 (591)
T TIGR00437        58 -------------------------SL-E--EEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLLE----LGIPM  102 (591)
T ss_pred             -------------------------ch-H--HHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHHh----cCCCE
Confidence                                     00 0  11223333  47999999999987432   2223333333    37899


Q ss_pred             EEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHH
Q psy1524         226 VVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKE  305 (592)
Q Consensus       226 ILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~  305 (592)
                      ++|+||+|+.++                               +.+. .+.+.+.+ ..+.+++++||++|+|++++++.
T Consensus       103 IIVlNK~Dl~~~-------------------------------~~i~-~d~~~L~~-~lg~pvv~tSA~tg~Gi~eL~~~  149 (591)
T TIGR00437       103 ILALNLVDEAEK-------------------------------KGIR-IDEEKLEE-RLGVPVVPTSATEGRGIERLKDA  149 (591)
T ss_pred             EEEEehhHHHHh-------------------------------CCCh-hhHHHHHH-HcCCCEEEEECCCCCCHHHHHHH
Confidence            999999998754                               2222 23344544 45678999999999999999999


Q ss_pred             HHHHH
Q psy1524         306 LLVQA  310 (592)
Q Consensus       306 Li~~i  310 (592)
                      +.+.+
T Consensus       150 i~~~~  154 (591)
T TIGR00437       150 IRKAI  154 (591)
T ss_pred             HHHHh
Confidence            98765

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.62  E-value=4.6e-15  Score=167.75  Aligned_cols=155  Identities=19%  Similarity=0.233  Sum_probs=109.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC---CCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN---TFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~---~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      +.|+++|..|+|||||+++|++.   .+.+.+..++. +.....+..++  ..+.||||||+                  
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGh------------------   60 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGH------------------   60 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCH------------------
Confidence            46999999999999999999963   34444444433 55445566666  66778999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc---CCHHHHHHHHHHHH
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP---NSFEEIRLIRDHIF  215 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~---~Sfe~l~~~l~~L~  215 (592)
                                                           ++|......++.++|++|+|+|+++.   .+++.+.    .+.
T Consensus        61 -------------------------------------e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~----il~   99 (581)
T TIGR00475        61 -------------------------------------EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA----VLD   99 (581)
T ss_pred             -------------------------------------HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH----HHH
Confidence                                                 77777777788999999999999984   3444332    222


Q ss_pred             HhhcCCCCC-EEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcC---CCeEEEc
Q psy1524         216 ETKASTAVP-IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDW---ENGFVEA  291 (592)
Q Consensus       216 ~~~~~~~~P-IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~---~~~~~Ev  291 (592)
                      .    .++| +|+|+||+|+.+...                             .....++...+.+...   ..++++|
T Consensus       100 ~----lgi~~iIVVlNK~Dlv~~~~-----------------------------~~~~~~ei~~~l~~~~~~~~~~ii~v  146 (581)
T TIGR00475       100 L----LGIPHTIVVITKADRVNEEE-----------------------------IKRTEMFMKQILNSYIFLKNAKIFKT  146 (581)
T ss_pred             H----cCCCeEEEEEECCCCCCHHH-----------------------------HHHHHHHHHHHHHHhCCCCCCcEEEE
Confidence            2    2567 999999999976411                             0011233344433221   4689999


Q ss_pred             ccCCCccHHHHHHHHHHHHH
Q psy1524         292 SAKDNTNITQVFKELLVQAK  311 (592)
Q Consensus       292 SAktg~gVeeLf~~Li~~i~  311 (592)
                      ||++|.||+++++.+.+.+.
T Consensus       147 SA~tG~GI~eL~~~L~~l~~  166 (581)
T TIGR00475       147 SAKTGQGIGELKKELKNLLE  166 (581)
T ss_pred             eCCCCCCchhHHHHHHHHHH
Confidence            99999999999998877663

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>KOG4423|consensus

Probab=99.62  E-value=2.2e-17  Score=156.74  Aligned_cols=173  Identities=24%  Similarity=0.382  Sum_probs=142.7

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCe-EEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGV-HLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~-~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ....+|+.|+|+-+||||+++.+++...|...|..|++ |+..+.+..|.. -+.+++||.+|+                
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQ----------------   85 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQ----------------   85 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhh----------------
Confidence            46789999999999999999999999999999999998 776666666554 467889999999                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             ++|-.|...|++.|.+.++|||+++..+|+....|.+++..
T Consensus        86 ---------------------------------------erfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdlds  126 (229)
T KOG4423|consen   86 ---------------------------------------ERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDS  126 (229)
T ss_pred             ---------------------------------------hhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccC
Confidence                                                   88888999999999999999999999999999999998864


Q ss_pred             hh---cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEccc
Q psy1524         217 TK---ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASA  293 (592)
Q Consensus       217 ~~---~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSA  293 (592)
                      -.   .....|+|+..||||.....                              ..-...+...+.+.......+|+||
T Consensus       127 k~qLpng~Pv~~vllankCd~e~~a------------------------------~~~~~~~~d~f~kengf~gwtets~  176 (229)
T KOG4423|consen  127 KLQLPNGTPVPCVLLANKCDQEKSA------------------------------KNEATRQFDNFKKENGFEGWTETSA  176 (229)
T ss_pred             cccCCCCCcchheeccchhccChHh------------------------------hhhhHHHHHHHHhccCccceeeecc
Confidence            32   34567899999999987641                              0111234445555444566899999


Q ss_pred             CCCccHHHHHHHHHHHHHHhccc
Q psy1524         294 KDNTNITQVFKELLVQAKVKYNL  316 (592)
Q Consensus       294 ktg~gVeeLf~~Li~~i~~~~~~  316 (592)
                      |.+.|++|+.+.+++.+..+...
T Consensus       177 Kenkni~Ea~r~lVe~~lvnd~q  199 (229)
T KOG4423|consen  177 KENKNIPEAQRELVEKILVNDEQ  199 (229)
T ss_pred             ccccChhHHHHHHHHHHHhhccC
Confidence            99999999999999999877644

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.61  E-value=1.7e-14  Score=166.70  Aligned_cols=160  Identities=29%  Similarity=0.351  Sum_probs=109.5

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ..+...|+|+|..++|||||+++|....+.....+.+. +.....+.+++  ..++||||||+                 
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGh-----------------  347 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGH-----------------  347 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCC-----------------
Confidence            45778999999999999999999998777654444332 33334455555  45677999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            +.|..++..++..+|++|+|||+++...-..... +..+   
T Consensus       348 --------------------------------------e~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~-i~~a---  385 (787)
T PRK05306        348 --------------------------------------EAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEA-INHA---  385 (787)
T ss_pred             --------------------------------------ccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHH-HHHH---
Confidence                                                  7788888888999999999999988532222221 1222   


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChH--HHHHHHhh-cCCCeEEEcccC
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYD--TTESVVQV-DWENGFVEASAK  294 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~e--e~~~la~~-~~~~~~~EvSAk  294 (592)
                       ...++|+|||+||+|+...+.                             ..+..+  +...+... ....+++++||+
T Consensus       386 -~~~~vPiIVviNKiDl~~a~~-----------------------------e~V~~eL~~~~~~~e~~g~~vp~vpvSAk  435 (787)
T PRK05306        386 -KAAGVPIIVAINKIDKPGANP-----------------------------DRVKQELSEYGLVPEEWGGDTIFVPVSAK  435 (787)
T ss_pred             -HhcCCcEEEEEECccccccCH-----------------------------HHHHHHHHHhcccHHHhCCCceEEEEeCC
Confidence             234789999999999964310                             000000  00001111 123679999999


Q ss_pred             CCccHHHHHHHHHHH
Q psy1524         295 DNTNITQVFKELLVQ  309 (592)
Q Consensus       295 tg~gVeeLf~~Li~~  309 (592)
                      +|.||+++|+.|+..
T Consensus       436 tG~GI~eLle~I~~~  450 (787)
T PRK05306        436 TGEGIDELLEAILLQ  450 (787)
T ss_pred             CCCCchHHHHhhhhh
Confidence            999999999998764

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.61  E-value=7.9e-15  Score=136.16  Aligned_cols=164  Identities=15%  Similarity=0.162  Sum_probs=100.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      .|+++|++|||||||+|.++++.+.....++.. ......+..++   .+.+|||+|......                 
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~-----------------   60 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKV-----------------   60 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCcccccc-----------------
Confidence            489999999999999999997666544444443 22222333343   677799999821100                 


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh---cCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS---SADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~---~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                  .....+.+..+...++.   .++++++|+|.++..+.... ..+..+..   
T Consensus        61 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~l~~---  108 (170)
T cd01876          61 ----------------------------SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDL-EMLDWLEE---  108 (170)
T ss_pred             ----------------------------CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHH-HHHHHHHH---
Confidence                                        00111334444444544   45788999999876433222 12223332   


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh-hcCCCeEEEcccCCCcc
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ-VDWENGFVEASAKDNTN  298 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~-~~~~~~~~EvSAktg~g  298 (592)
                       .+.|+++|+||+|+.....                             ............+ .....+++++||+++.|
T Consensus       109 -~~~~vi~v~nK~D~~~~~~-----------------------------~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~  158 (170)
T cd01876         109 -LGIPFLVVLTKADKLKKSE-----------------------------LAKALKEIKKELKLFEIDPPIILFSSLKGQG  158 (170)
T ss_pred             -cCCCEEEEEEchhcCChHH-----------------------------HHHHHHHHHHHHHhccCCCceEEEecCCCCC
Confidence             2589999999999864411                             0111112222222 23456799999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQ  309 (592)
Q Consensus       299 VeeLf~~Li~~  309 (592)
                      ++++++.|.+.
T Consensus       159 ~~~l~~~l~~~  169 (170)
T cd01876         159 IDELRALIEKW  169 (170)
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG1423|consensus

Probab=99.61  E-value=4.3e-15  Score=151.13  Aligned_cols=232  Identities=20%  Similarity=0.213  Sum_probs=137.5

Q ss_pred             CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCccccccccc
Q psy1524          56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLW  133 (592)
Q Consensus        56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~  133 (592)
                      +....+.+.|++||.||||||||.|++++.+..  .....||.......++-+..++.|  +||||.-...         
T Consensus        66 e~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf--~DTPGlvs~~---------  134 (379)
T KOG1423|consen   66 EEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVF--YDTPGLVSKK---------  134 (379)
T ss_pred             chhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEE--ecCCcccccc---------
Confidence            345578899999999999999999999988765  555667766666666667766655  9999982110         


Q ss_pred             CCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHH
Q psy1524         134 GPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH  213 (592)
Q Consensus       134 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~  213 (592)
                         .  ..+..+..                             .+..-....+..||++++|+|+++....-+.. .+..
T Consensus       135 ---~--~r~~~l~~-----------------------------s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~-vl~~  179 (379)
T KOG1423|consen  135 ---M--HRRHHLMM-----------------------------SVLQNPRDAAQNADCVVVVVDASATRTPLHPR-VLHM  179 (379)
T ss_pred             ---h--hhhHHHHH-----------------------------HhhhCHHHHHhhCCEEEEEEeccCCcCccChH-HHHH
Confidence               0  00000000                             01111233477899999999999744332222 3444


Q ss_pred             HHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc----------
Q psy1524         214 IFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD----------  283 (592)
Q Consensus       214 L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~----------  283 (592)
                      +.++   .++|-|+|.||+|+....+.+           -.+-+.......+.    ...+..+.+....          
T Consensus       180 l~~y---s~ips~lvmnkid~~k~k~~L-----------l~l~~~Lt~g~l~~----~kl~v~~~f~~~p~~~~~~~~~g  241 (379)
T KOG1423|consen  180 LEEY---SKIPSILVMNKIDKLKQKRLL-----------LNLKDLLTNGELAK----LKLEVQEKFTDVPSDEKWRTICG  241 (379)
T ss_pred             HHHH---hcCCceeeccchhcchhhhHH-----------hhhHHhccccccch----hhhhHHHHhccCCcccccccccC
Confidence            5444   478999999999988652211           11111111111111    0112222222111          


Q ss_pred             C--CCeEEEcccCCCccHHHHHHHHHHHHHHhcccChhhhhhcccCC---------CCCCCCCCCCCCCCcceeeEEee
Q psy1524         284 W--ENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSL---------PPVQHSPNPVPYDTTESVVQVDW  351 (592)
Q Consensus       284 ~--~~~~~EvSAktg~gVeeLf~~Li~~i~~~~~~~~~~~~~~r~~~---------~~~~~s~~pVpydta~slas~d~  351 (592)
                      |  ...+|++||++|+||+++-++++.++.......+..-.......         .-.-+-|..|||---..++.++-
T Consensus       242 wshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd~~pqEVPY~lq~~i~~w~e  320 (379)
T KOG1423|consen  242 WSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLDHLPQEVPYNLQVRILSWKE  320 (379)
T ss_pred             cccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHHHHHHHHhhCccccCcceEEEEEEeee
Confidence            2  34589999999999999999999998665444332211111000         00115688899988777775543

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.59  E-value=1.8e-14  Score=162.50  Aligned_cols=112  Identities=22%  Similarity=0.261  Sum_probs=78.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCce----eeeE-EEEE------------eeCCeEEEEEEEeCCCCCCCC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI----EEMH-HEDF------------SMNGVHLKLDILDTSGEQSGK  124 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt----~d~~-~~~v------------~vdg~~v~L~I~DT~G~~~~~  124 (592)
                      ..-|+|+|.+|+|||||+++|++..+......++    +..+ ....            .++.....+.||||||+    
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~----   79 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH----   79 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc----
Confidence            4579999999999999999999887764433322    2111 1100            00001113778999999    


Q ss_pred             cccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc---
Q psy1524         125 GLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP---  201 (592)
Q Consensus       125 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~---  201 (592)
                                                                         +.|..++..++..+|++|+|||+++.   
T Consensus        80 ---------------------------------------------------e~f~~l~~~~~~~aD~~IlVvD~~~g~~~  108 (590)
T TIGR00491        80 ---------------------------------------------------EAFTNLRKRGGALADLAILIVDINEGFKP  108 (590)
T ss_pred             ---------------------------------------------------HhHHHHHHHHHhhCCEEEEEEECCcCCCH
Confidence                                                               88888998899999999999999974   


Q ss_pred             CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524         202 NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD  236 (592)
Q Consensus       202 ~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~  236 (592)
                      .+++.+.    .+..    .++|+|+|+||+|+..
T Consensus       109 qt~e~i~----~l~~----~~vpiIVv~NK~Dl~~  135 (590)
T TIGR00491       109 QTQEALN----ILRM----YKTPFVVAANKIDRIP  135 (590)
T ss_pred             hHHHHHH----HHHH----cCCCEEEEEECCCccc
Confidence            4444432    2222    3689999999999974

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.59  E-value=1.4e-14  Score=142.72  Aligned_cols=103  Identities=17%  Similarity=0.160  Sum_probs=64.1

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCC
Q psy1524         176 NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGL  255 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~  255 (592)
                      +.|.......+..+|++|+|+|++++.........+..+...   ...|+|+|+||+|+..+..                
T Consensus        94 ~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~----------------  154 (203)
T cd01888          94 EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQ----------------  154 (203)
T ss_pred             HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHH----------------
Confidence            666666666678899999999998742111111122222221   2357999999999975310                


Q ss_pred             CCccccccCCCCCCCCChHHHHHHHhh--cCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         256 PDSVCAHQISGTPDQVPYDTTESVVQV--DWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       256 ~~~~~~~~~~~~~r~Vs~ee~~~la~~--~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                                   .....++...+...  ....+++++||++|.||+++|+.+.+.+
T Consensus       155 -------------~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         155 -------------ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             -------------HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence                         00011222333221  1245799999999999999999998765

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>KOG0071|consensus

Probab=99.58  E-value=2.6e-14  Score=130.36  Aligned_cols=158  Identities=15%  Similarity=0.240  Sum_probs=121.5

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ..++|+++|-.++||||++..|.-+... ...||++- ....+.+.  .+.+++||.+|+                    
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvGF-nvetVtyk--N~kfNvwdvGGq--------------------   71 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGF-NVETVTYK--NVKFNVWDVGGQ--------------------   71 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCCc-ccccccce-eEEEEEee--eeEEeeeeccCc--------------------
Confidence            3689999999999999999999977654 34667662 22333443  477888999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         ++.+.+++.|+.+..++|||+|..+.+..++++.-+..+......
T Consensus        72 -----------------------------------d~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em  116 (180)
T KOG0071|consen   72 -----------------------------------DKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREM  116 (180)
T ss_pred             -----------------------------------hhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhh
Confidence                                               889999999999999999999999988888877766666555556


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcC----CCeEEEcccCCC
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDW----ENGFVEASAKDN  296 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~----~~~~~EvSAktg  296 (592)
                      .+.|++|.+||.|+.+.                                 .++.++..+.....    .--+..+||.+|
T Consensus       117 ~~~~~LvlANkQDlp~A---------------------------------~~pqei~d~leLe~~r~~~W~vqp~~a~~g  163 (180)
T KOG0071|consen  117 RDAIILILANKQDLPDA---------------------------------MKPQEIQDKLELERIRDRNWYVQPSCALSG  163 (180)
T ss_pred             hcceEEEEecCcccccc---------------------------------cCHHHHHHHhccccccCCccEeeccccccc
Confidence            68899999999999865                                 23344444333211    122678999999


Q ss_pred             ccHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQA  310 (592)
Q Consensus       297 ~gVeeLf~~Li~~i  310 (592)
                      .|+.|-|.++...+
T Consensus       164 dgL~eglswlsnn~  177 (180)
T KOG0071|consen  164 DGLKEGLSWLSNNL  177 (180)
T ss_pred             hhHHHHHHHHHhhc
Confidence            99999999998765

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.58  E-value=3.4e-14  Score=164.81  Aligned_cols=163  Identities=15%  Similarity=0.215  Sum_probs=108.8

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      +.++|+++|.+|||||||+|+|++... ..++..++.+.....+..++  ..+++|||||..+-...             
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~-------------   66 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTI-------------   66 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccc-------------
Confidence            357999999999999999999997643 35566666665555555555  45666999998211000             


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhh--hcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSI--SSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~--~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                    ....+.++  .+...++  ..+|++|+|+|+++.+.-   ..+..++.+.
T Consensus        67 ------------------------------~~~~s~~E--~i~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~  111 (772)
T PRK09554         67 ------------------------------SSQTSLDE--QIACHYILSGDADLLINVVDASNLERN---LYLTLQLLEL  111 (772)
T ss_pred             ------------------------------cccccHHH--HHHHHHHhccCCCEEEEEecCCcchhh---HHHHHHHHHc
Confidence                                          00000011  1222333  479999999999886432   2344455443


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                          ++|+|+|+||+|+.++                               +.+. ...+.+.+ ..+++++++||++|.
T Consensus       112 ----giPvIvVlNK~Dl~~~-------------------------------~~i~-id~~~L~~-~LG~pVvpiSA~~g~  154 (772)
T PRK09554        112 ----GIPCIVALNMLDIAEK-------------------------------QNIR-IDIDALSA-RLGCPVIPLVSTRGR  154 (772)
T ss_pred             ----CCCEEEEEEchhhhhc-------------------------------cCcH-HHHHHHHH-HhCCCEEEEEeecCC
Confidence                6899999999998754                               2222 23444544 567789999999999


Q ss_pred             cHHHHHHHHHHHH
Q psy1524         298 NITQVFKELLVQA  310 (592)
Q Consensus       298 gVeeLf~~Li~~i  310 (592)
                      |++++.+.+.+..
T Consensus       155 GIdeL~~~I~~~~  167 (772)
T PRK09554        155 GIEALKLAIDRHQ  167 (772)
T ss_pred             CHHHHHHHHHHhh
Confidence            9999998887764

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.58  E-value=4.9e-14  Score=159.86  Aligned_cols=157  Identities=19%  Similarity=0.263  Sum_probs=107.8

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcC--CCCC-----CccCc------ee-eeEEEEEee-----CCeEEEEEEEeCCCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYN--TFSP-----KYKRT------IE-EMHHEDFSM-----NGVHLKLDILDTSGEQ  121 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~--~f~~-----~~~~T------t~-d~~~~~v~v-----dg~~v~L~I~DT~G~~  121 (592)
                      ..-+|+|+|..++|||||+.+|+..  .+..     .+..+      .+ ......+.+     ++..+.++||||||+ 
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh-   84 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH-   84 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc-
Confidence            3458999999999999999999853  2211     11110      01 111111111     566789999999999 


Q ss_pred             CCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc
Q psy1524         122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP  201 (592)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~  201 (592)
                                                                            ..|......++..+|++|+|+|+++.
T Consensus        85 ------------------------------------------------------~dF~~~v~~sl~~aD~aILVVDas~g  110 (600)
T PRK05433         85 ------------------------------------------------------VDFSYEVSRSLAACEGALLVVDASQG  110 (600)
T ss_pred             ------------------------------------------------------HHHHHHHHHHHHHCCEEEEEEECCCC
Confidence                                                                  67777788889999999999999998


Q ss_pred             CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh
Q psy1524         202 NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ  281 (592)
Q Consensus       202 ~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~  281 (592)
                      ........|.... .    .++|+|+|+||+|+....                                 .......+..
T Consensus       111 v~~qt~~~~~~~~-~----~~lpiIvViNKiDl~~a~---------------------------------~~~v~~ei~~  152 (600)
T PRK05433        111 VEAQTLANVYLAL-E----NDLEIIPVLNKIDLPAAD---------------------------------PERVKQEIED  152 (600)
T ss_pred             CCHHHHHHHHHHH-H----CCCCEEEEEECCCCCccc---------------------------------HHHHHHHHHH
Confidence            7766665554432 1    368999999999986431                                 0111122222


Q ss_pred             hc--CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         282 VD--WENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       282 ~~--~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      ..  ....++++||++|.||+++++.+++.+
T Consensus       153 ~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~l  183 (600)
T PRK05433        153 VIGIDASDAVLVSAKTGIGIEEVLEAIVERI  183 (600)
T ss_pred             HhCCCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence            11  112489999999999999999998876

>KOG0076|consensus

Probab=99.57  E-value=7e-15  Score=138.58  Aligned_cols=163  Identities=17%  Similarity=0.284  Sum_probs=122.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC------CCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN------TFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVL  132 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~------~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~  132 (592)
                      ...+.|+|+|..|+|||||+.++-..      ... ....+|++ .....+.+++.  .+.|||..|+            
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg-Lnig~i~v~~~--~l~fwdlgGQ------------   79 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG-LNIGTIEVCNA--PLSFWDLGGQ------------   79 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc-eeecceeeccc--eeEEEEcCCh------------
Confidence            34578999999999999999887633      111 23334443 33344556654  4556999999            


Q ss_pred             cCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHH
Q psy1524         133 WGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRD  212 (592)
Q Consensus       133 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~  212 (592)
                                                                 +..++++..||..|+++|+|+|++|++.|+.....+.
T Consensus        80 -------------------------------------------e~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~  116 (197)
T KOG0076|consen   80 -------------------------------------------ESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFE  116 (197)
T ss_pred             -------------------------------------------HHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHH
Confidence                                                       8899999999999999999999999999999988888


Q ss_pred             HHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHH---HHhh--cCCCe
Q psy1524         213 HIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTES---VVQV--DWENG  287 (592)
Q Consensus       213 ~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~---la~~--~~~~~  287 (592)
                      .+...-.....|+++.+||.|+.+.-.                                 ..+...   .+..  ...++
T Consensus       117 ~v~~~E~leg~p~L~lankqd~q~~~~---------------------------------~~El~~~~~~~e~~~~rd~~  163 (197)
T KOG0076|consen  117 KVVENEKLEGAPVLVLANKQDLQNAME---------------------------------AAELDGVFGLAELIPRRDNP  163 (197)
T ss_pred             HHHHHHHhcCCchhhhcchhhhhhhhh---------------------------------HHHHHHHhhhhhhcCCccCc
Confidence            777765667899999999999986511                                 111111   1111  23567


Q ss_pred             EEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524         288 FVEASAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       288 ~~EvSAktg~gVeeLf~~Li~~i~~~  313 (592)
                      +.+|||.+|+||+|..+++++.+...
T Consensus       164 ~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  164 FQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             cccchhhhcccHHHHHHHHHHHHhhc
Confidence            99999999999999999999998544

>KOG1707|consensus

Probab=99.57  E-value=7.9e-15  Score=159.70  Aligned_cols=166  Identities=23%  Similarity=0.283  Sum_probs=114.5

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .....++|+++|+.||||||||..++.+.|++..++-... +.--..+....+...|+||+..                 
T Consensus         5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~-i~IPadvtPe~vpt~ivD~ss~-----------------   66 (625)
T KOG1707|consen    5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR-ILIPADVTPENVPTSIVDTSSD-----------------   66 (625)
T ss_pred             cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCc-cccCCccCcCcCceEEEecccc-----------------
Confidence            3466799999999999999999999999998765444332 1111233333344667999755                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            +.-+.....-++.||++++||+++++++.+.+...|..+.+.
T Consensus        67 --------------------------------------~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~  108 (625)
T KOG1707|consen   67 --------------------------------------SDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQ  108 (625)
T ss_pred             --------------------------------------cchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhc
Confidence                                                  111222234588999999999999999999998855555554


Q ss_pred             hc--CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHH-HHHHHh-hcCCCeEEEccc
Q psy1524         218 KA--STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDT-TESVVQ-VDWENGFVEASA  293 (592)
Q Consensus       218 ~~--~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee-~~~la~-~~~~~~~~EvSA  293 (592)
                      ..  ..++||||||||+|+...+                               ..+.+. ...+.. ......+|+|||
T Consensus       109 ~~~~~~~~PVILvGNK~d~~~~~-------------------------------~~s~e~~~~pim~~f~EiEtciecSA  157 (625)
T KOG1707|consen  109 LFGDYHETPVILVGNKSDNGDNE-------------------------------NNSDEVNTLPIMIAFAEIETCIECSA  157 (625)
T ss_pred             ccCCCccCCEEEEeeccCCcccc-------------------------------ccchhHHHHHHHHHhHHHHHHHhhhh
Confidence            33  2578999999999998762                               111122 222222 122335899999


Q ss_pred             CCCccHHHHHHHHHHHH
Q psy1524         294 KDNTNITQVFKELLVQA  310 (592)
Q Consensus       294 ktg~gVeeLf~~Li~~i  310 (592)
                      ++-.|+.|+|...-+.+
T Consensus       158 ~~~~n~~e~fYyaqKaV  174 (625)
T KOG1707|consen  158 LTLANVSELFYYAQKAV  174 (625)
T ss_pred             hhhhhhHhhhhhhhhee
Confidence            99999999998776665

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.54  E-value=1.7e-13  Score=133.13  Aligned_cols=160  Identities=19%  Similarity=0.245  Sum_probs=105.1

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCC--CC-----------------CccCceeeeEEEEEeeCCeEEEEEEEeCCCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTF--SP-----------------KYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ  121 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f--~~-----------------~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~  121 (592)
                      ..++|+++|..++|||||+.+|+...-  ..                 .....+.+.....+..+.....++|+||||+ 
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~-   80 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH-   80 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS-
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc-
Confidence            457999999999999999999994321  11                 0001111223333331233456677999999 


Q ss_pred             CCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc
Q psy1524         122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP  201 (592)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~  201 (592)
                                                                            ..|.......+..+|++|+|+|+.+.
T Consensus        81 ------------------------------------------------------~~f~~~~~~~~~~~D~ailvVda~~g  106 (188)
T PF00009_consen   81 ------------------------------------------------------EDFIKEMIRGLRQADIAILVVDANDG  106 (188)
T ss_dssp             ------------------------------------------------------HHHHHHHHHHHTTSSEEEEEEETTTB
T ss_pred             ------------------------------------------------------cceeecccceecccccceeeeecccc
Confidence                                                                  66777777778999999999999877


Q ss_pred             CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHH-HHH
Q psy1524         202 NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTE-SVV  280 (592)
Q Consensus       202 ~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~-~la  280 (592)
                      .... ....+..+..    .++|+|+|.||+|+.....                             .. ..++.. .+.
T Consensus       107 ~~~~-~~~~l~~~~~----~~~p~ivvlNK~D~~~~~~-----------------------------~~-~~~~~~~~l~  151 (188)
T PF00009_consen  107 IQPQ-TEEHLKILRE----LGIPIIVVLNKMDLIEKEL-----------------------------EE-IIEEIKEKLL  151 (188)
T ss_dssp             STHH-HHHHHHHHHH----TT-SEEEEEETCTSSHHHH-----------------------------HH-HHHHHHHHHH
T ss_pred             cccc-cccccccccc----cccceEEeeeeccchhhhH-----------------------------HH-HHHHHHHHhc
Confidence            5433 3334444433    3789999999999984310                             00 011222 232


Q ss_pred             hhc-----CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         281 QVD-----WENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       281 ~~~-----~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      +..     ...+++++||++|.|+++|++.+.+.+
T Consensus       152 ~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  152 KEYGENGEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             HHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             cccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence            211     135799999999999999999998865

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>KOG1191|consensus

Probab=99.53  E-value=8.9e-14  Score=149.27  Aligned_cols=177  Identities=23%  Similarity=0.266  Sum_probs=124.3

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ..++|+|+|.||||||||+|.|.+...  +.....||.|.....++++|.++.|  .||+|.++            ....
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L--~DTAGiRe------------~~~~  332 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRL--SDTAGIRE------------ESND  332 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEE--Eecccccc------------ccCC
Confidence            348999999999999999999997754  5788899999999999999977776  99999943            2334


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeC--CCcCCHHHHHHHHHHHHH
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAI--DDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDv--sd~~Sfe~l~~~l~~L~~  216 (592)
                      ..|.+++.++...                                  +..||++++|+|+  ++-++-..+...+.....
T Consensus       333 ~iE~~gI~rA~k~----------------------------------~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~  378 (531)
T KOG1191|consen  333 GIEALGIERARKR----------------------------------IERADVILLVVDAEESDTESDLKIARILETEGV  378 (531)
T ss_pred             hhHHHhHHHHHHH----------------------------------HhhcCEEEEEecccccccccchHHHHHHHHhcc
Confidence            5777777776553                                  7889999999999  555544444444443332


Q ss_pred             hh-----cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEc
Q psy1524         217 TK-----ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA  291 (592)
Q Consensus       217 ~~-----~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~Ev  291 (592)
                      -.     ...+.|++++.||+|+..+-.+..   ..                      .+-+..+  ... .......++
T Consensus       379 g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~---~~----------------------~~~~~~~--~~~-~~~~i~~~v  430 (531)
T KOG1191|consen  379 GLVVIVNKMEKQRIILVANKSDLVSKIPEMT---KI----------------------PVVYPSA--EGR-SVFPIVVEV  430 (531)
T ss_pred             ceEEEeccccccceEEEechhhccCcccccc---CC----------------------ceecccc--ccC-cccceEEEe
Confidence            11     124579999999999987621100   00                      0000111  001 112236679


Q ss_pred             ccCCCccHHHHHHHHHHHHHHh
Q psy1524         292 SAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       292 SAktg~gVeeLf~~Li~~i~~~  313 (592)
                      |+++++|+++|...+.+.+...
T Consensus       431 s~~tkeg~~~L~~all~~~~~~  452 (531)
T KOG1191|consen  431 SCTTKEGCERLSTALLNIVERL  452 (531)
T ss_pred             eechhhhHHHHHHHHHHHHHHh
Confidence            9999999999999999888443

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.52  E-value=2.3e-13  Score=153.90  Aligned_cols=113  Identities=27%  Similarity=0.358  Sum_probs=78.0

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccC----ceeee-EEEEEe--eCCeEE----------EEEEEeCCCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKR----TIEEM-HHEDFS--MNGVHL----------KLDILDTSGEQS  122 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~----Tt~d~-~~~~v~--vdg~~v----------~L~I~DT~G~~~  122 (592)
                      .+...|+|+|..|+|||||+++|.+..+......    +++.. ......  ..+..+          .+.||||||+  
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~--   81 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH--   81 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh--
Confidence            4556899999999999999999987655433332    22211 110000  001111          1578999999  


Q ss_pred             CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC--
Q psy1524         123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD--  200 (592)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd--  200 (592)
                                                                           +.|..++...+..+|++|+|+|+++  
T Consensus        82 -----------------------------------------------------e~f~~~~~~~~~~aD~~IlVvDa~~g~  108 (586)
T PRK04004         82 -----------------------------------------------------EAFTNLRKRGGALADIAILVVDINEGF  108 (586)
T ss_pred             -----------------------------------------------------HHHHHHHHHhHhhCCEEEEEEECCCCC
Confidence                                                                 7888888888899999999999997  


Q ss_pred             -cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524         201 -PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA  235 (592)
Q Consensus       201 -~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~  235 (592)
                       +.+++.+..    +..    .++|+++|+||+|+.
T Consensus       109 ~~qt~e~i~~----~~~----~~vpiIvviNK~D~~  136 (586)
T PRK04004        109 QPQTIEAINI----LKR----RKTPFVVAANKIDRI  136 (586)
T ss_pred             CHhHHHHHHH----HHH----cCCCEEEEEECcCCc
Confidence             555555432    222    378999999999986

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.51  E-value=7.4e-13  Score=126.47  Aligned_cols=159  Identities=20%  Similarity=0.318  Sum_probs=119.4

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCC--------CCccC---ceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcc
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFS--------PKYKR---TIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGL  126 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~--------~~~~~---Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~  126 (592)
                      ......||+|+|+-++||||++.+++.....        ..+..   |+.-.....+.+++ ...+.++|||||      
T Consensus         6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq------   78 (187)
T COG2229           6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQ------   78 (187)
T ss_pred             ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCc------
Confidence            4567789999999999999999999966431        12222   33322333334444 133455999999      


Q ss_pred             cccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHH
Q psy1524         127 KCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEE  206 (592)
Q Consensus       127 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~  206 (592)
                                                                       ++|..|+..+.++++++|+++|.+.+..| +
T Consensus        79 -------------------------------------------------~RF~fm~~~l~~ga~gaivlVDss~~~~~-~  108 (187)
T COG2229          79 -------------------------------------------------ERFKFMWEILSRGAVGAIVLVDSSRPITF-H  108 (187)
T ss_pred             -------------------------------------------------HHHHHHHHHHhCCcceEEEEEecCCCcch-H
Confidence                                                             99999999999999999999999999998 5


Q ss_pred             HHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc-CC
Q psy1524         207 IRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD-WE  285 (592)
Q Consensus       207 l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~-~~  285 (592)
                      ....++.+...   ..+|++|++||.||.+.                                 .+.++..++.+.. ..
T Consensus       109 a~~ii~f~~~~---~~ip~vVa~NK~DL~~a---------------------------------~ppe~i~e~l~~~~~~  152 (187)
T COG2229         109 AEEIIDFLTSR---NPIPVVVAINKQDLFDA---------------------------------LPPEKIREALKLELLS  152 (187)
T ss_pred             HHHHHHHHhhc---cCCCEEEEeeccccCCC---------------------------------CCHHHHHHHHHhccCC
Confidence            55455544332   12999999999999865                                 3556677766655 37


Q ss_pred             CeEEEcccCCCccHHHHHHHHHHH
Q psy1524         286 NGFVEASAKDNTNITQVFKELLVQ  309 (592)
Q Consensus       286 ~~~~EvSAktg~gVeeLf~~Li~~  309 (592)
                      .+.++++|..++++.+.++.+...
T Consensus       153 ~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         153 VPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             CceeeeecccchhHHHHHHHHHhh
Confidence            889999999999999998887765

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.50  E-value=1.3e-13  Score=150.83  Aligned_cols=159  Identities=19%  Similarity=0.223  Sum_probs=100.1

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc--CCCCC------------------------------CccCceeeeEEEEEeeCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY--NTFSP------------------------------KYKRTIEEMHHEDFSMNG  107 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~--~~f~~------------------------------~~~~Tt~d~~~~~v~vdg  107 (592)
                      ...++|+++|..++|||||+++|+.  +.+..                              .....+.+.....+..++
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~   84 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK   84 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence            5668999999999999999999985  22221                              011222244444444444


Q ss_pred             eEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh
Q psy1524         108 VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS  187 (592)
Q Consensus       108 ~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~  187 (592)
                        +.++||||||+                                                       ++|.......+.
T Consensus        85 --~~i~iiDtpGh-------------------------------------------------------~~f~~~~~~~~~  107 (426)
T TIGR00483        85 --YEVTIVDCPGH-------------------------------------------------------RDFIKNMITGAS  107 (426)
T ss_pred             --eEEEEEECCCH-------------------------------------------------------HHHHHHHHhhhh
Confidence              56778999999                                                       555554455678


Q ss_pred             cCCcEEEEEeCCCcCCHHHHHHH-HHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCC
Q psy1524         188 SADAFILVYAIDDPNSFEEIRLI-RDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISG  266 (592)
Q Consensus       188 ~AD~iIlVyDvsd~~Sfe~l~~~-l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  266 (592)
                      .+|++|+|+|+++.+++.....+ +..+...  ....|+|+|+||+|+.+..+..                         
T Consensus       108 ~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~--~~~~~iIVviNK~Dl~~~~~~~-------------------------  160 (426)
T TIGR00483       108 QADAAVLVVAVGDGEFEVQPQTREHAFLART--LGINQLIVAINKMDSVNYDEEE-------------------------  160 (426)
T ss_pred             hCCEEEEEEECCCCCcccCCchHHHHHHHHH--cCCCeEEEEEEChhccCccHHH-------------------------
Confidence            89999999999988654222111 1112222  1235799999999997421000                         


Q ss_pred             CCCCCChHHHHHHHhhcC----CCeEEEcccCCCccHHHHHH
Q psy1524         267 TPDQVPYDTTESVVQVDW----ENGFVEASAKDNTNITQVFK  304 (592)
Q Consensus       267 ~~r~Vs~ee~~~la~~~~----~~~~~EvSAktg~gVeeLf~  304 (592)
                        .....++...+++...    ..++++|||++|.||++++.
T Consensus       161 --~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~  200 (426)
T TIGR00483       161 --FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE  200 (426)
T ss_pred             --HHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence              0011234444444322    36799999999999998654

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>KOG1489|consensus

Probab=99.50  E-value=1.6e-13  Score=140.44  Aligned_cols=163  Identities=18%  Similarity=0.284  Sum_probs=114.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC-CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNT-FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~-f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      ..|.+||.||+|||||+|.++..+ -+..|..||......++..++... +.+-|.||.-++...+.+.           
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q-~tVADiPGiI~GAh~nkGl-----------  264 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQ-ITVADIPGIIEGAHMNKGL-----------  264 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccce-eEeccCccccccccccCcc-----------
Confidence            356799999999999999999664 357888888765555555555432 6679999983322111111           


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc---CCHHHHHHHHHHHHHhh
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP---NSFEEIRLIRDHIFETK  218 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~---~Sfe~l~~~l~~L~~~~  218 (592)
                                   .                    ..|    -..+++|+++++|+|++..   .-++.++.++.++..+.
T Consensus       265 -------------G--------------------~~F----LrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~ye  307 (366)
T KOG1489|consen  265 -------------G--------------------YKF----LRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYE  307 (366)
T ss_pred             -------------c--------------------HHH----HHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHh
Confidence                         0                    011    1136789999999999998   78888888888876553


Q ss_pred             -cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         219 -ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       219 -~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                       .-.+.|.++|+||+|+.+..                                  .+...++++......++++||++++
T Consensus       308 k~L~~rp~liVaNKiD~~eae----------------------------------~~~l~~L~~~lq~~~V~pvsA~~~e  353 (366)
T KOG1489|consen  308 KGLADRPALIVANKIDLPEAE----------------------------------KNLLSSLAKRLQNPHVVPVSAKSGE  353 (366)
T ss_pred             hhhccCceEEEEeccCchhHH----------------------------------HHHHHHHHHHcCCCcEEEeeecccc
Confidence             23578999999999996541                                  1123455554444458999999999


Q ss_pred             cHHHHHHHHHH
Q psy1524         298 NITQVFKELLV  308 (592)
Q Consensus       298 gVeeLf~~Li~  308 (592)
                      |+++++..|-+
T Consensus       354 gl~~ll~~lr~  364 (366)
T KOG1489|consen  354 GLEELLNGLRE  364 (366)
T ss_pred             chHHHHHHHhh
Confidence            99999887643

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.49  E-value=1.7e-13  Score=135.46  Aligned_cols=151  Identities=23%  Similarity=0.192  Sum_probs=89.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC--CCCC------------------------------CccCceeeeEEEEEeeCCeEEE
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN--TFSP------------------------------KYKRTIEEMHHEDFSMNGVHLK  111 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~--~f~~------------------------------~~~~Tt~d~~~~~v~vdg~~v~  111 (592)
                      +|+|+|.+|+|||||+++|+..  ....                              ....++.+.....+..++.  .
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~--~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKR--K   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCc--e
Confidence            5899999999999999999843  1110                              0012222333333444554  4


Q ss_pred             EEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCc
Q psy1524         112 LDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADA  191 (592)
Q Consensus       112 L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~  191 (592)
                      +.||||||+                                                       ++|.......+..+|+
T Consensus        79 ~~liDTpG~-------------------------------------------------------~~~~~~~~~~~~~ad~  103 (208)
T cd04166          79 FIIADTPGH-------------------------------------------------------EQYTRNMVTGASTADL  103 (208)
T ss_pred             EEEEECCcH-------------------------------------------------------HHHHHHHHHhhhhCCE
Confidence            556999998                                                       5554444456789999


Q ss_pred             EEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCC
Q psy1524         192 FILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQV  271 (592)
Q Consensus       192 iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~V  271 (592)
                      +|+|+|+++...- .....+..+...   ...++|+|+||+|+.......                           ...
T Consensus       104 ~llVvD~~~~~~~-~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~---------------------------~~~  152 (208)
T cd04166         104 AILLVDARKGVLE-QTRRHSYILSLL---GIRHVVVAVNKMDLVDYSEEV---------------------------FEE  152 (208)
T ss_pred             EEEEEECCCCccH-hHHHHHHHHHHc---CCCcEEEEEEchhcccCCHHH---------------------------HHH
Confidence            9999999876422 222222222221   224688899999986431000                           000


Q ss_pred             ChHHHHHHHhhcC--CCeEEEcccCCCccHHHH
Q psy1524         272 PYDTTESVVQVDW--ENGFVEASAKDNTNITQV  302 (592)
Q Consensus       272 s~ee~~~la~~~~--~~~~~EvSAktg~gVeeL  302 (592)
                      ...+...+.+...  ..++++|||++|.||++.
T Consensus       153 i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         153 IVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            1122333333222  245899999999999854

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd04167 Snu114p Snu114p subfamily

Probab=99.48  E-value=2.2e-13  Score=135.13  Aligned_cols=112  Identities=22%  Similarity=0.309  Sum_probs=78.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCC-----------ccCce------e-e--eEEEEEee---CCeEEEEEEEeCCCC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPK-----------YKRTI------E-E--MHHEDFSM---NGVHLKLDILDTSGE  120 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~-----------~~~Tt------~-d--~~~~~v~v---dg~~v~L~I~DT~G~  120 (592)
                      +|+|+|..++|||||+++|+.......           +..+.      + .  .....+..   ++..+.++||||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            689999999999999999996543321           01110      0 0  11111111   456788999999999


Q ss_pred             CCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC
Q psy1524         121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD  200 (592)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd  200 (592)
                                                                             ++|......++..+|++|+|+|+++
T Consensus        82 -------------------------------------------------------~~f~~~~~~~~~~aD~~llVvD~~~  106 (213)
T cd04167          82 -------------------------------------------------------VNFMDEVAAALRLSDGVVLVVDVVE  106 (213)
T ss_pred             -------------------------------------------------------cchHHHHHHHHHhCCEEEEEEECCC
Confidence                                                                   6676777778999999999999998


Q ss_pred             cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524         201 PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA  235 (592)
Q Consensus       201 ~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~  235 (592)
                      ..++.. ..++..+..    .+.|+++|+||+|+.
T Consensus       107 ~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~  136 (213)
T cd04167         107 GVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL  136 (213)
T ss_pred             CCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence            877643 333343322    358999999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.48  E-value=2.3e-13  Score=147.97  Aligned_cols=103  Identities=19%  Similarity=0.178  Sum_probs=65.2

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCC
Q psy1524         176 NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGL  255 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~  255 (592)
                      ++|..........+|++|+|+|+++..........+..+...   ...|+|+|+||+|+.+...                
T Consensus        91 ~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~---gi~~iIVvvNK~Dl~~~~~----------------  151 (406)
T TIGR03680        91 ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII---GIKNIVIVQNKIDLVSKEK----------------  151 (406)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc---CCCeEEEEEEccccCCHHH----------------
Confidence            677766666778899999999998643111222222222221   2357999999999975411                


Q ss_pred             CCccccccCCCCCCCCChHHHHHHHhh--cCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         256 PDSVCAHQISGTPDQVPYDTTESVVQV--DWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       256 ~~~~~~~~~~~~~r~Vs~ee~~~la~~--~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                                   .....++...+.+.  ....+++++||++|.|++++++.|...+
T Consensus       152 -------------~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       152 -------------ALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             -------------HHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence                         00112223333221  1256799999999999999999998765

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.48  E-value=3.1e-13  Score=147.77  Aligned_cols=159  Identities=20%  Similarity=0.277  Sum_probs=95.7

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC--CCCC------------------------------CccCceeeeEEEEEeeCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSP------------------------------KYKRTIEEMHHEDFSMNG  107 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~------------------------------~~~~Tt~d~~~~~v~vdg  107 (592)
                      ...++|+++|..++|||||+++|+..  ....                              ....++.+.....+..++
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~   83 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK   83 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence            45699999999999999999999832  1111                              122333344444444444


Q ss_pred             eEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh
Q psy1524         108 VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS  187 (592)
Q Consensus       108 ~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~  187 (592)
                        +.+.||||||+                                                       +.|.......+.
T Consensus        84 --~~i~liDtpG~-------------------------------------------------------~~~~~~~~~~~~  106 (425)
T PRK12317         84 --YYFTIVDCPGH-------------------------------------------------------RDFVKNMITGAS  106 (425)
T ss_pred             --eEEEEEECCCc-------------------------------------------------------ccchhhHhhchh
Confidence              56777999998                                                       444333333467


Q ss_pred             cCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCC
Q psy1524         188 SADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGT  267 (592)
Q Consensus       188 ~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  267 (592)
                      .+|++|+|+|+++...+.....++..+...  ....|+|+|+||+|+...+...                          
T Consensus       107 ~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~--~~~~~iivviNK~Dl~~~~~~~--------------------------  158 (425)
T PRK12317        107 QADAAVLVVAADDAGGVMPQTREHVFLART--LGINQLIVAINKMDAVNYDEKR--------------------------  158 (425)
T ss_pred             cCCEEEEEEEcccCCCCCcchHHHHHHHHH--cCCCeEEEEEEccccccccHHH--------------------------
Confidence            899999999998732222222222222222  1234799999999997521000                          


Q ss_pred             CCCCChHHHHHHHhhcC----CCeEEEcccCCCccHHHHHH
Q psy1524         268 PDQVPYDTTESVVQVDW----ENGFVEASAKDNTNITQVFK  304 (592)
Q Consensus       268 ~r~Vs~ee~~~la~~~~----~~~~~EvSAktg~gVeeLf~  304 (592)
                       -....++...+++...    ..++++|||++|.||+++++
T Consensus       159 -~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        159 -YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             -HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence             0011233333333221    35799999999999998653

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.46  E-value=8.5e-13  Score=122.92  Aligned_cols=140  Identities=18%  Similarity=0.240  Sum_probs=93.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV  143 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~  143 (592)
                      ||+|||..|||||||+++|.+....-....++        .+     .-.++||||.-                  +|. 
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~~~KTq~i--------~~-----~~~~IDTPGEy------------------iE~-   50 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIRYKKTQAI--------EY-----YDNTIDTPGEY------------------IEN-   50 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCCcCcccee--------Ee-----cccEEECChhh------------------eeC-
Confidence            89999999999999999999765532222222        11     12349999970                  000 


Q ss_pred             HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524         144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV  223 (592)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~  223 (592)
                                                      ..|....-....+||+|++|.|++++.+.--     ..+.   .....
T Consensus        51 --------------------------------~~~y~aLi~ta~dad~V~ll~dat~~~~~~p-----P~fa---~~f~~   90 (143)
T PF10662_consen   51 --------------------------------PRFYHALIVTAQDADVVLLLQDATEPRSVFP-----PGFA---SMFNK   90 (143)
T ss_pred             --------------------------------HHHHHHHHHHHhhCCEEEEEecCCCCCccCC-----chhh---cccCC
Confidence                                            1122222233558999999999998754211     0011   12368


Q ss_pred             CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHH
Q psy1524         224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF  303 (592)
Q Consensus       224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf  303 (592)
                      |+|-|.||+|+..+.                                ...+.+.++.+.......|++||.+|+||++|.
T Consensus        91 pvIGVITK~Dl~~~~--------------------------------~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~  138 (143)
T PF10662_consen   91 PVIGVITKIDLPSDD--------------------------------ANIERAKKWLKNAGVKEIFEVSAVTGEGIEELK  138 (143)
T ss_pred             CEEEEEECccCccch--------------------------------hhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHH
Confidence            999999999998431                                234666677666665568999999999999999


Q ss_pred             HHHH
Q psy1524         304 KELL  307 (592)
Q Consensus       304 ~~Li  307 (592)
                      +.|-
T Consensus       139 ~~L~  142 (143)
T PF10662_consen  139 DYLE  142 (143)
T ss_pred             HHHh
Confidence            8763

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.45  E-value=1.3e-12  Score=132.13  Aligned_cols=185  Identities=16%  Similarity=0.183  Sum_probs=109.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC--CC----CccCceee-----------eEEEEEeeCCeEEEEEEEeCCCCCCCCcc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTF--SP----KYKRTIEE-----------MHHEDFSMNGVHLKLDILDTSGEQSGKGL  126 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f--~~----~~~~Tt~d-----------~~~~~v~vdg~~v~L~I~DT~G~~~~~~~  126 (592)
                      +|+++|..|+|||||+++|+...-  ..    ....+..|           .......+....+.++||||||+      
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~------   74 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGH------   74 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCc------
Confidence            489999999999999999985311  00    00001111           11222233334467788999999      


Q ss_pred             cccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHH
Q psy1524         127 KCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEE  206 (592)
Q Consensus       127 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~  206 (592)
                                                                       ..|......+++.+|++|+|+|+++.... .
T Consensus        75 -------------------------------------------------~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~  104 (237)
T cd04168          75 -------------------------------------------------MDFIAEVERSLSVLDGAILVISAVEGVQA-Q  104 (237)
T ss_pred             -------------------------------------------------cchHHHHHHHHHHhCeEEEEEeCCCCCCH-H
Confidence                                                             56666777789999999999999987653 3


Q ss_pred             HHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCC------CCC---ccc-----cccC----C---
Q psy1524         207 IRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSG------LPD---SVC-----AHQI----S---  265 (592)
Q Consensus       207 l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~------~~~---~~~-----~~~~----~---  265 (592)
                      ...++..+..    .++|+++|+||+|+...+..  ..-..+...++.      +|.   ...     +...    .   
T Consensus       105 ~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~--~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~d  178 (237)
T cd04168         105 TRILWRLLRK----LNIPTIIFVNKIDRAGADLE--KVYQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGD  178 (237)
T ss_pred             HHHHHHHHHH----cCCCEEEEEECccccCCCHH--HHHHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCC
Confidence            4445554543    36899999999999753210  000011111110      000   000     0000    0   


Q ss_pred             -------CCCCCCChHHHHHHHh----hcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         266 -------GTPDQVPYDTTESVVQ----VDWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       266 -------~~~r~Vs~ee~~~la~----~~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                             -....++.++...-.+    ...-.|++..||.++.||..|++.+++.+
T Consensus       179 d~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~  234 (237)
T cd04168         179 DELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLF  234 (237)
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhc
Confidence                   0022455444443222    13345788889999999999999998765

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG0074|consensus

Probab=99.45  E-value=3.5e-13  Score=123.15  Aligned_cols=160  Identities=18%  Similarity=0.227  Sum_probs=118.9

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      .+.+||+++|-.|+|||||+.+|...... ...||-+ +..+.+..++ .+.+++||.+|+                   
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~G-Fn~k~v~~~g-~f~LnvwDiGGq-------------------   72 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNG-FNTKKVEYDG-TFHLNVWDIGGQ-------------------   72 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChh-hccccCC-cceEEEeecC-cEEEEEEecCCc-------------------
Confidence            67899999999999999999999876543 2344444 3445555555 477888999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          ...+..+..||.+.|++|+|+|.+|...|+++...+-+|.+-..
T Consensus        73 ------------------------------------r~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeK  116 (185)
T KOG0074|consen   73 ------------------------------------RGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEK  116 (185)
T ss_pred             ------------------------------------cccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhh
Confidence                                                56778899999999999999999999999999887777766544


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh---cCCCeEEEcccCCC
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV---DWENGFVEASAKDN  296 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~---~~~~~~~EvSAktg  296 (592)
                      -..+|+++-.||.|+...-                                ...+.+..+.-.   .....+-+|||.++
T Consensus       117 l~~vpvlIfankQdlltaa--------------------------------~~eeia~klnl~~lrdRswhIq~csals~  164 (185)
T KOG0074|consen  117 LAEVPVLIFANKQDLLTAA--------------------------------KVEEIALKLNLAGLRDRSWHIQECSALSL  164 (185)
T ss_pred             hhccceeehhhhhHHHhhc--------------------------------chHHHHHhcchhhhhhceEEeeeCccccc
Confidence            5678999999999987641                                011122211100   11223668999999


Q ss_pred             ccHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQ  309 (592)
Q Consensus       297 ~gVeeLf~~Li~~  309 (592)
                      +|+.+-.+++...
T Consensus       165 eg~~dg~~wv~sn  177 (185)
T KOG0074|consen  165 EGSTDGSDWVQSN  177 (185)
T ss_pred             cCccCcchhhhcC
Confidence            9999888877654

>PRK10218 GTP-binding protein; Provisional

Probab=99.45  E-value=1.6e-12  Score=147.28  Aligned_cols=160  Identities=18%  Similarity=0.282  Sum_probs=107.8

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc--CCCCCCcc------------Ccee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY--NTFSPKYK------------RTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKG  125 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~--~~f~~~~~------------~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~  125 (592)
                      ..-+|+|+|..++|||||+++|+.  +.|...+.            .+.+ ........++...+.++||||||+     
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~-----   78 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGH-----   78 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCc-----
Confidence            346999999999999999999996  44443221            1122 223333444555678888999999     


Q ss_pred             ccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHH
Q psy1524         126 LKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFE  205 (592)
Q Consensus       126 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe  205 (592)
                                                                        ..|......+++.+|++|+|+|+++.... 
T Consensus        79 --------------------------------------------------~df~~~v~~~l~~aDg~ILVVDa~~G~~~-  107 (607)
T PRK10218         79 --------------------------------------------------ADFGGEVERVMSMVDSVLLVVDAFDGPMP-  107 (607)
T ss_pred             --------------------------------------------------chhHHHHHHHHHhCCEEEEEEecccCccH-
Confidence                                                              67777888899999999999999876432 


Q ss_pred             HHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh----
Q psy1524         206 EIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ----  281 (592)
Q Consensus       206 ~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~----  281 (592)
                      ....++..+..    .++|+|+|+||+|+......                             .+ .++...+..    
T Consensus       108 qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~-----------------------------~v-l~ei~~l~~~l~~  153 (607)
T PRK10218        108 QTRFVTKKAFA----YGLKPIVVINKVDRPGARPD-----------------------------WV-VDQVFDLFVNLDA  153 (607)
T ss_pred             HHHHHHHHHHH----cCCCEEEEEECcCCCCCchh-----------------------------HH-HHHHHHHHhccCc
Confidence            23334444433    36899999999998754110                             00 111111110    


Q ss_pred             --hcCCCeEEEcccCCCc----------cHHHHHHHHHHHH
Q psy1524         282 --VDWENGFVEASAKDNT----------NITQVFKELLVQA  310 (592)
Q Consensus       282 --~~~~~~~~EvSAktg~----------gVeeLf~~Li~~i  310 (592)
                        .....+++.+||++|.          |+..+|+.++..+
T Consensus       154 ~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        154 TDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV  194 (607)
T ss_pred             cccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence              1134679999999998          5888888887776

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.45  E-value=9.2e-13  Score=149.21  Aligned_cols=158  Identities=18%  Similarity=0.276  Sum_probs=106.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc--CCCCCCccC------------cee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY--NTFSPKYKR------------TIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKC  128 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~--~~f~~~~~~------------Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~  128 (592)
                      +|+|+|..++|||||+++|+.  +.+......            ..+ ....+...++...+.++||||||+        
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh--------   74 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGH--------   74 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCH--------
Confidence            799999999999999999995  344321100            001 122222333334477888999999        


Q ss_pred             cccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH
Q psy1524         129 GAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR  208 (592)
Q Consensus       129 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~  208 (592)
                                                                     ..|......+++.+|++|+|+|+++.. .....
T Consensus        75 -----------------------------------------------~DF~~ev~~~l~~aD~alLVVDa~~G~-~~qT~  106 (594)
T TIGR01394        75 -----------------------------------------------ADFGGEVERVLGMVDGVLLLVDASEGP-MPQTR  106 (594)
T ss_pred             -----------------------------------------------HHHHHHHHHHHHhCCEEEEEEeCCCCC-cHHHH
Confidence                                                           777777788899999999999998743 44555


Q ss_pred             HHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh------h
Q psy1524         209 LIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ------V  282 (592)
Q Consensus       209 ~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~------~  282 (592)
                      .++..+..    .++|+|+|+||+|+.....                             ..+ .++...+..      .
T Consensus       107 ~~l~~a~~----~~ip~IVviNKiD~~~a~~-----------------------------~~v-~~ei~~l~~~~g~~~e  152 (594)
T TIGR01394       107 FVLKKALE----LGLKPIVVINKIDRPSARP-----------------------------DEV-VDEVFDLFAELGADDE  152 (594)
T ss_pred             HHHHHHHH----CCCCEEEEEECCCCCCcCH-----------------------------HHH-HHHHHHHHHhhccccc
Confidence            66666554    3689999999999865310                             001 111111111      1


Q ss_pred             cCCCeEEEcccCCCc----------cHHHHHHHHHHHHH
Q psy1524         283 DWENGFVEASAKDNT----------NITQVFKELLVQAK  311 (592)
Q Consensus       283 ~~~~~~~EvSAktg~----------gVeeLf~~Li~~i~  311 (592)
                      ...++++.+||++|.          |++.+|+.+++.+.
T Consensus       153 ~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       153 QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            234679999999996          79999999988773

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.45  E-value=7.6e-13  Score=144.15  Aligned_cols=164  Identities=18%  Similarity=0.190  Sum_probs=99.0

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCcc------Cceee-----------------eEEEEEeeC--C----e
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYK------RTIEE-----------------MHHEDFSMN--G----V  108 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~------~Tt~d-----------------~~~~~v~vd--g----~  108 (592)
                      .+...++|+++|..++|||||+.+|.+. +.+...      -|+.-                 .+.....++  +    .
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~-~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGV-WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL   83 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCe-ecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence            3456799999999999999999999643 111111      11110                 011111111  1    1


Q ss_pred             EEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhc
Q psy1524         109 HLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISS  188 (592)
Q Consensus       109 ~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~  188 (592)
                      ...++||||||+                                                       ++|..........
T Consensus        84 ~~~i~liDtPG~-------------------------------------------------------~~f~~~~~~~~~~  108 (411)
T PRK04000         84 LRRVSFVDAPGH-------------------------------------------------------ETLMATMLSGAAL  108 (411)
T ss_pred             ccEEEEEECCCH-------------------------------------------------------HHHHHHHHHHHhh
Confidence            256788999998                                                       5555444444566


Q ss_pred             CCcEEEEEeCCCcC-CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCC
Q psy1524         189 ADAFILVYAIDDPN-SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGT  267 (592)
Q Consensus       189 AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  267 (592)
                      +|++|+|+|++++. .-... ..+..+...   ...|+++|+||+|+.+...                            
T Consensus       109 ~D~~llVVDa~~~~~~~~t~-~~l~~l~~~---~i~~iiVVlNK~Dl~~~~~----------------------------  156 (411)
T PRK04000        109 MDGAILVIAANEPCPQPQTK-EHLMALDII---GIKNIVIVQNKIDLVSKER----------------------------  156 (411)
T ss_pred             CCEEEEEEECCCCCCChhHH-HHHHHHHHc---CCCcEEEEEEeeccccchh----------------------------
Confidence            89999999999653 22211 122222221   2347999999999975411                            


Q ss_pred             CCCCChHHHHHHHhh--cCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         268 PDQVPYDTTESVVQV--DWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       268 ~r~Vs~ee~~~la~~--~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                       .....++...+++.  ....+++++||++|.|++++++.|...+
T Consensus       157 -~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        157 -ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             -HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence             00012233333321  1246799999999999999999987765

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.43  E-value=3.7e-12  Score=131.54  Aligned_cols=173  Identities=25%  Similarity=0.286  Sum_probs=119.6

Q ss_pred             CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524          56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG  134 (592)
Q Consensus        56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~  134 (592)
                      +........|+|.|+||||||||++.+++.+. +..|+.||...+...+..++  ..+|++||||.-+.+.         
T Consensus       162 P~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl---------  230 (346)
T COG1084         162 PAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPL---------  230 (346)
T ss_pred             CCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCCh---------
Confidence            34455778999999999999999999997754 47899999877777666666  4566699999822111         


Q ss_pred             CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc--CCHHHHHHHHH
Q psy1524         135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP--NSFEEIRLIRD  212 (592)
Q Consensus       135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~--~Sfe~l~~~l~  212 (592)
                                          .+.+.                -+..++... -.-+++|+|+||.+..  -+.+....++.
T Consensus       231 --------------------~ErN~----------------IE~qAi~AL-~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~  273 (346)
T COG1084         231 --------------------EERNE----------------IERQAILAL-RHLAGVILFLFDPSETCGYSLEEQISLLE  273 (346)
T ss_pred             --------------------HHhcH----------------HHHHHHHHH-HHhcCeEEEEEcCccccCCCHHHHHHHHH
Confidence                                11000                111222222 1236899999999764  57788888888


Q ss_pred             HHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcc
Q psy1524         213 HIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEAS  292 (592)
Q Consensus       213 ~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvS  292 (592)
                      ++....   +.|+|+|.||+|+.+.+                                 ..+++..............+|
T Consensus       274 eIk~~f---~~p~v~V~nK~D~~~~e---------------------------------~~~~~~~~~~~~~~~~~~~~~  317 (346)
T COG1084         274 EIKELF---KAPIVVVINKIDIADEE---------------------------------KLEEIEASVLEEGGEEPLKIS  317 (346)
T ss_pred             HHHHhc---CCCeEEEEecccccchh---------------------------------HHHHHHHHHHhhcccccccee
Confidence            888763   48999999999988541                                 123333333334455567889


Q ss_pred             cCCCccHHHHHHHHHHHHHH
Q psy1524         293 AKDNTNITQVFKELLVQAKV  312 (592)
Q Consensus       293 Aktg~gVeeLf~~Li~~i~~  312 (592)
                      +..+.+++.+-+.+...+.+
T Consensus       318 ~~~~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         318 ATKGCGLDKLREEVRKTALE  337 (346)
T ss_pred             eeehhhHHHHHHHHHHHhhc
Confidence            99999999888888777543

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.43  E-value=1.3e-12  Score=145.99  Aligned_cols=160  Identities=15%  Similarity=0.237  Sum_probs=114.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcC-CCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYN-TFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~-~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ..+|+++|.||||||||+|++++. ..+.++...|-+.....+...+..+.  ++|.||.            ++....-.
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~--ivDLPG~------------YSL~~~S~   68 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIE--IVDLPGT------------YSLTAYSE   68 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEE--EEeCCCc------------CCCCCCCc
Confidence            457999999999999999999965 55688998888888888888887655  5999998            11111100


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhh--hcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSI--SSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~--~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                         |+  .+.+.|+  .+.|++|.|.|++|-+.--.+.   -++.+. 
T Consensus        69 -----------------------------------DE--~Var~~ll~~~~D~ivnVvDAtnLeRnLylt---lQLlE~-  107 (653)
T COG0370          69 -----------------------------------DE--KVARDFLLEGKPDLIVNVVDATNLERNLYLT---LQLLEL-  107 (653)
T ss_pred             -----------------------------------hH--HHHHHHHhcCCCCEEEEEcccchHHHHHHHH---HHHHHc-
Confidence                                               11  2333333  3579999999999876322222   234443 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                         +.|+|++.|++|....                               +.+.. +.+.+.+ ..+++++++||++|.|
T Consensus       108 ---g~p~ilaLNm~D~A~~-------------------------------~Gi~I-D~~~L~~-~LGvPVv~tvA~~g~G  151 (653)
T COG0370         108 ---GIPMILALNMIDEAKK-------------------------------RGIRI-DIEKLSK-LLGVPVVPTVAKRGEG  151 (653)
T ss_pred             ---CCCeEEEeccHhhHHh-------------------------------cCCcc-cHHHHHH-HhCCCEEEEEeecCCC
Confidence               7899999999999876                               22221 1233333 6789999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQAKV  312 (592)
Q Consensus       299 VeeLf~~Li~~i~~  312 (592)
                      ++++.+.+++....
T Consensus       152 ~~~l~~~i~~~~~~  165 (653)
T COG0370         152 LEELKRAIIELAES  165 (653)
T ss_pred             HHHHHHHHHHhccc
Confidence            99999999876643

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.43  E-value=2.4e-12  Score=129.23  Aligned_cols=120  Identities=14%  Similarity=0.039  Sum_probs=61.1

Q ss_pred             cchhHHHHHhh--hcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccC
Q psy1524         176 NEFPAMRALSI--SSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLS  253 (592)
Q Consensus       176 e~~~~l~~~~~--~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~  253 (592)
                      ++|.......+  ..+|++++|+|++.... .....++..+..    .++|+++|.||+|+.+... .......+...+.
T Consensus        95 ~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~----~~ip~ivvvNK~D~~~~~~-~~~~~~~l~~~L~  168 (224)
T cd04165          95 ERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA----LNIPVFVVVTKIDLAPANI-LQETLKDLKRILK  168 (224)
T ss_pred             HHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEECccccCHHH-HHHHHHHHHHHhc
Confidence            55543333333  36899999999987654 222334444433    3689999999999865421 1111111111111


Q ss_pred             CCCCccccccCCCCCCCCChHHHHHHH---hhcCCCeEEEcccCCCccHHHHHHHHH
Q psy1524         254 GLPDSVCAHQISGTPDQVPYDTTESVV---QVDWENGFVEASAKDNTNITQVFKELL  307 (592)
Q Consensus       254 ~~~~~~~~~~~~~~~r~Vs~ee~~~la---~~~~~~~~~EvSAktg~gVeeLf~~Li  307 (592)
                      ...-...+-      ...+.+++...+   ......++|.+||.+|+|+++|...|.
T Consensus       169 ~~g~~~~p~------~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         169 VPGVRKLPV------PVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             CCCccccce------eeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            000000000      000001111111   112345899999999999999987664

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.42  E-value=4.4e-12  Score=123.46  Aligned_cols=170  Identities=16%  Similarity=0.200  Sum_probs=105.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      +...-|+++|.+|||||||||+|++..-......|.+ ......+.+++.   +.|+|.||.+-....            
T Consensus        22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~------------   86 (200)
T COG0218          22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVP------------   86 (200)
T ss_pred             CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCC------------
Confidence            3557999999999999999999998653212222222 223334455554   566999998321110            


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhc---CCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISS---ADAFILVYAIDDPNSFEEIRLIRDHIF  215 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~---AD~iIlVyDvsd~~Sfe~l~~~l~~L~  215 (592)
                              +                         ...+.+..+...|+..   -.++++++|+...-.-.+. .+++.+.
T Consensus        87 --------k-------------------------~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~  132 (200)
T COG0218          87 --------K-------------------------EVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLL  132 (200)
T ss_pred             --------H-------------------------HHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHH
Confidence                    0                         0115666677777653   5678889998766544333 3444444


Q ss_pred             HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCe--EEEccc
Q psy1524         216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASA  293 (592)
Q Consensus       216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~--~~EvSA  293 (592)
                      +    .++|+++|+||+|.......                             .-................  ++.+|+
T Consensus       133 ~----~~i~~~vv~tK~DKi~~~~~-----------------------------~k~l~~v~~~l~~~~~~~~~~~~~ss  179 (200)
T COG0218         133 E----LGIPVIVVLTKADKLKKSER-----------------------------NKQLNKVAEELKKPPPDDQWVVLFSS  179 (200)
T ss_pred             H----cCCCeEEEEEccccCChhHH-----------------------------HHHHHHHHHHhcCCCCccceEEEEec
Confidence            4    48999999999999875211                             000111111111122222  788899


Q ss_pred             CCCccHHHHHHHHHHHHH
Q psy1524         294 KDNTNITQVFKELLVQAK  311 (592)
Q Consensus       294 ktg~gVeeLf~~Li~~i~  311 (592)
                      .++.|++++...|.+.+.
T Consensus       180 ~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         180 LKKKGIDELKAKILEWLK  197 (200)
T ss_pred             ccccCHHHHHHHHHHHhh
Confidence            999999999998887763

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.42  E-value=2.2e-12  Score=146.83  Aligned_cols=156  Identities=19%  Similarity=0.217  Sum_probs=98.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC---CCCCCcc-CceeeeEEEEEee-CCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN---TFSPKYK-RTIEEMHHEDFSM-NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~---~f~~~~~-~Tt~d~~~~~v~v-dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      -|+++|..++|||||+++|++.   .+.+... ..+-+.....+.. ++.  .+.||||||+                  
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~--~i~~IDtPGh------------------   61 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGR--VLGFIDVPGH------------------   61 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCc--EEEEEECCCH------------------
Confidence            5899999999999999999953   3333322 2222322222322 343  3677999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           ++|.......+..+|++++|+|+++...- .....+..+..  
T Consensus        62 -------------------------------------e~fi~~m~~g~~~~D~~lLVVda~eg~~~-qT~ehl~il~~--  101 (614)
T PRK10512         62 -------------------------------------EKFLSNMLAGVGGIDHALLVVACDDGVMA-QTREHLAILQL--  101 (614)
T ss_pred             -------------------------------------HHHHHHHHHHhhcCCEEEEEEECCCCCcH-HHHHHHHHHHH--
Confidence                                                 77766666678899999999999874221 11122222222  


Q ss_pred             cCCCCC-EEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc--CCCeEEEcccCC
Q psy1524         219 ASTAVP-IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD--WENGFVEASAKD  295 (592)
Q Consensus       219 ~~~~~P-IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~--~~~~~~EvSAkt  295 (592)
                        .++| +|||+||+|+.++.. .                            ....++...+....  ...++++|||++
T Consensus       102 --lgi~~iIVVlNKiDlv~~~~-~----------------------------~~v~~ei~~~l~~~~~~~~~ii~VSA~t  150 (614)
T PRK10512        102 --TGNPMLTVALTKADRVDEAR-I----------------------------AEVRRQVKAVLREYGFAEAKLFVTAATE  150 (614)
T ss_pred             --cCCCeEEEEEECCccCCHHH-H----------------------------HHHHHHHHHHHHhcCCCCCcEEEEeCCC
Confidence              1345 689999999975411 0                            00122333333222  136799999999


Q ss_pred             CccHHHHHHHHHHHH
Q psy1524         296 NTNITQVFKELLVQA  310 (592)
Q Consensus       296 g~gVeeLf~~Li~~i  310 (592)
                      |.|++++++.|....
T Consensus       151 G~gI~~L~~~L~~~~  165 (614)
T PRK10512        151 GRGIDALREHLLQLP  165 (614)
T ss_pred             CCCCHHHHHHHHHhh
Confidence            999999999987654

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.42  E-value=4.7e-12  Score=133.35  Aligned_cols=56  Identities=18%  Similarity=0.303  Sum_probs=39.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEe---------------------eCC-eEEEEEEEeCCCC
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFS---------------------MNG-VHLKLDILDTSGE  120 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~---------------------vdg-~~v~L~I~DT~G~  120 (592)
                      |+|+|.+|||||||+|+|++..+. .+|..|+.+.......                     +++ ..+.++||||+|.
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl   79 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL   79 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence            589999999999999999987653 4555555433222222                     233 3467899999998

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.40  E-value=6.6e-12  Score=123.44  Aligned_cols=113  Identities=20%  Similarity=0.191  Sum_probs=71.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCC------------C-----CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTF------------S-----PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGK  124 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f------------~-----~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~  124 (592)
                      .++|+++|..++|||||+++|+....            .     +....++.+.....+..++  ..+.|+||||+    
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~--~~i~~iDtPG~----   75 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETAN--RHYAHVDCPGH----   75 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCC--eEEEEEECcCH----
Confidence            47999999999999999999985310            0     0011122222222233344  45567999998    


Q ss_pred             cccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCH
Q psy1524         125 GLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSF  204 (592)
Q Consensus       125 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sf  204 (592)
                                                                         ..|.......+..+|++++|+|++....-
T Consensus        76 ---------------------------------------------------~~~~~~~~~~~~~~D~~ilVvda~~g~~~  104 (195)
T cd01884          76 ---------------------------------------------------ADYIKNMITGAAQMDGAILVVSATDGPMP  104 (195)
T ss_pred             ---------------------------------------------------HHHHHHHHHHhhhCCEEEEEEECCCCCcH
Confidence                                                               44544445567889999999999865332


Q ss_pred             HHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCcc
Q psy1524         205 EEIRLIRDHIFETKASTAVP-IVVVGNKSDLAD  236 (592)
Q Consensus       205 e~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~  236 (592)
                       .....+..+..    .++| +|+|.||+|+..
T Consensus       105 -~~~~~~~~~~~----~~~~~iIvviNK~D~~~  132 (195)
T cd01884         105 -QTREHLLLARQ----VGVPYIVVFLNKADMVD  132 (195)
T ss_pred             -HHHHHHHHHHH----cCCCcEEEEEeCCCCCC
Confidence             22233333433    2566 889999999864

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.39  E-value=3.6e-12  Score=125.08  Aligned_cols=173  Identities=15%  Similarity=0.113  Sum_probs=95.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceee--eE--EEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEE--MH--HEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d--~~--~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .+||+|+|.+|||||||+|.|++..+......++..  ..  ...+... ....+.+|||+|.......           
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~-----------   68 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFP-----------   68 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCC-----------
Confidence            379999999999999999999986554322222220  00  0011111 1225677999998211000           


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHH
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFE  216 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~  216 (592)
                                                           .+.|  +....+.++|++++|.|    .+|.... .++..+..
T Consensus        69 -------------------------------------~~~~--l~~~~~~~~d~~l~v~~----~~~~~~d~~~~~~l~~  105 (197)
T cd04104          69 -------------------------------------PDDY--LEEMKFSEYDFFIIISS----TRFSSNDVKLAKAIQC  105 (197)
T ss_pred             -------------------------------------HHHH--HHHhCccCcCEEEEEeC----CCCCHHHHHHHHHHHH
Confidence                                                 0112  22233567899888743    2233333 34555544


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHH----hh--cCCCeEEE
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVV----QV--DWENGFVE  290 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la----~~--~~~~~~~E  290 (592)
                      .    ..|+++|+||+|+.......+..                    +...+....++..+.+    ..  ....++|.
T Consensus       106 ~----~~~~ilV~nK~D~~~~~~~~~~~--------------------~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~  161 (197)
T cd04104         106 M----GKKFYFVRTKVDRDLSNEQRSKP--------------------RSFNREQVLQEIRDNCLENLQEAGVSEPPVFL  161 (197)
T ss_pred             h----CCCEEEEEecccchhhhhhcccc--------------------ccccHHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            3    57999999999996431110000                    0000000011111111    11  12346899


Q ss_pred             cccC--CCccHHHHHHHHHHHHHHh
Q psy1524         291 ASAK--DNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       291 vSAk--tg~gVeeLf~~Li~~i~~~  313 (592)
                      +|+.  .+.|+..+.+.|+..+...
T Consensus       162 vS~~~~~~~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         162 VSNFDPSDYDFPKLRETLLKDLPAH  186 (197)
T ss_pred             EeCCChhhcChHHHHHHHHHHhhHH
Confidence            9998  6799999999999998543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.38  E-value=3.1e-12  Score=132.55  Aligned_cols=170  Identities=18%  Similarity=0.220  Sum_probs=112.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      -|.+||.|||||||||+.++..+- ..+|..||....-..+.+++. -.+.+-|.||.-++.....+..           
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~-~sfv~ADIPGLIEGAs~G~GLG-----------  228 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG-ESFVVADIPGLIEGASEGVGLG-----------  228 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC-CcEEEecCcccccccccCCCcc-----------
Confidence            455899999999999999996643 478899988655555555222 2345599999843322211110           


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCC---HHHHHHHHHHHHHhh-
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNS---FEEIRLIRDHIFETK-  218 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~S---fe~l~~~l~~L~~~~-  218 (592)
                                                       .+|-    ..+.++.++++|+|++..+-   .+++..+..+|..+. 
T Consensus       229 ---------------------------------~~FL----rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~  271 (369)
T COG0536         229 ---------------------------------LRFL----RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP  271 (369)
T ss_pred             ---------------------------------HHHH----HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhH
Confidence                                             1111    12678999999999986553   677777888887652 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh-cCCCeEEEcccCCCc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV-DWENGFVEASAKDNT  297 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~-~~~~~~~EvSAktg~  297 (592)
                      .-.+.|.+||+||+|+..+.+                               ........+.+. .+...++ +||.++.
T Consensus       272 ~L~~K~~ivv~NKiD~~~~~e-------------------------------~~~~~~~~l~~~~~~~~~~~-ISa~t~~  319 (369)
T COG0536         272 KLAEKPRIVVLNKIDLPLDEE-------------------------------ELEELKKALAEALGWEVFYL-ISALTRE  319 (369)
T ss_pred             HhccCceEEEEeccCCCcCHH-------------------------------HHHHHHHHHHHhcCCCccee-eehhccc
Confidence            235789999999999665411                               111122223221 2222233 9999999


Q ss_pred             cHHHHHHHHHHHHHHhc
Q psy1524         298 NITQVFKELLVQAKVKY  314 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~~  314 (592)
                      |++++...+.+.+....
T Consensus       320 g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         320 GLDELLRALAELLEETK  336 (369)
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999998886553

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.37  E-value=7.7e-12  Score=111.71  Aligned_cols=114  Identities=25%  Similarity=0.394  Sum_probs=75.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +|+|+|.+|||||||+|+|++...  .....+++.......+.+++..+.  |+||||..+....+              
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~--~vDtpG~~~~~~~~--------------   64 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFI--LVDTPGINDGESQD--------------   64 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEE--EEESSSCSSSSHHH--------------
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEE--EEeCCCCcccchhh--------------
Confidence            699999999999999999997543  355566666555566677887765  59999983211100              


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                      .   .                            .+.+..... .+..+|++++|+|++++.. +....++..|.     .
T Consensus        65 ~---~----------------------------~~~~~~~~~-~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~-----~  106 (116)
T PF01926_consen   65 N---D----------------------------GKEIRKFLE-QISKSDLIIYVVDASNPIT-EDDKNILRELK-----N  106 (116)
T ss_dssp             H---H----------------------------HHHHHHHHH-HHCTESEEEEEEETTSHSH-HHHHHHHHHHH-----T
T ss_pred             H---H----------------------------HHHHHHHHH-HHHHCCEEEEEEECCCCCC-HHHHHHHHHHh-----c
Confidence            0   0                            011112222 3478999999999776321 33344444442     4


Q ss_pred             CCCEEEEEeC
Q psy1524         222 AVPIVVVGNK  231 (592)
Q Consensus       222 ~~PIILVgNK  231 (592)
                      +.|+++|.||
T Consensus       107 ~~~~i~v~NK  116 (116)
T PF01926_consen  107 KKPIILVLNK  116 (116)
T ss_dssp             TSEEEEEEES
T ss_pred             CCCEEEEEcC
Confidence            7899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.37  E-value=1.4e-11  Score=126.99  Aligned_cols=62  Identities=24%  Similarity=0.372  Sum_probs=51.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSG  123 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~  123 (592)
                      .-..+|++||.|+||||||++.|++..- ...|.+||.......+.++|.+  +||+|+||.-++
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~--IQild~Pgii~g  123 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQ--IQLLDLPGIIEG  123 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCce--EEEEcCcccccC
Confidence            4457999999999999999999997644 4789999998888889998855  556999998443

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.36  E-value=3.2e-12  Score=129.32  Aligned_cols=183  Identities=19%  Similarity=0.210  Sum_probs=121.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCc-cC-ceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKY-KR-TIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~-~~-Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ...++|+|+|.+|||||||||+|..+...+.. .+ ++.....-...+++.  .+.||||||.+++...+          
T Consensus        37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~--~l~lwDtPG~gdg~~~D----------  104 (296)
T COG3596          37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGE--NLVLWDTPGLGDGKDKD----------  104 (296)
T ss_pred             cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcccc--ceEEecCCCcccchhhh----------
Confidence            56689999999999999999999965443221 12 222111122234553  45569999996543322          


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            .+++.....++.++|.++++.|+.|+.--.+...|.+.+...
T Consensus       105 --------------------------------------~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~  146 (296)
T COG3596         105 --------------------------------------AEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG  146 (296)
T ss_pred             --------------------------------------HHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhc
Confidence                                                  457777777889999999999999886444445455555443


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcC-CCeEEEcccCCC
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDW-ENGFVEASAKDN  296 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~-~~~~~EvSAktg  296 (592)
                         -+.++++|.|.+|...+...|+.....+...+                ++...+++..+.+... -.+++.+|...+
T Consensus       147 ---~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~----------------~qfi~~k~~~~~~~~q~V~pV~~~~~r~~  207 (296)
T COG3596         147 ---LDKRVLFVVTQADRAEPGREWDSAGHQPSPAI----------------KQFIEEKAEALGRLFQEVKPVVAVSGRLP  207 (296)
T ss_pred             ---cCceeEEEEehhhhhccccccccccCCCCHHH----------------HHHHHHHHHHHHHHHhhcCCeEEeccccC
Confidence               35899999999999887555544333322222                3333444444444322 235778889999


Q ss_pred             ccHHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQAK  311 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~  311 (592)
                      .|++++...+++.+.
T Consensus       208 wgl~~l~~ali~~lp  222 (296)
T COG3596         208 WGLKELVRALITALP  222 (296)
T ss_pred             ccHHHHHHHHHHhCc
Confidence            999999999999884

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.35  E-value=4.3e-12  Score=126.56  Aligned_cols=113  Identities=23%  Similarity=0.272  Sum_probs=70.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC--CCC------------------------------CCccCceeeeEEEEEeeCCeEEE
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN--TFS------------------------------PKYKRTIEEMHHEDFSMNGVHLK  111 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~--~f~------------------------------~~~~~Tt~d~~~~~v~vdg~~v~  111 (592)
                      +|+|+|..++|||||+.+|+..  ...                              +....++.+.....+..++  ..
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence            4899999999999999999732  110                              0111222233344444455  56


Q ss_pred             EEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCc
Q psy1524         112 LDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADA  191 (592)
Q Consensus       112 L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~  191 (592)
                      +.||||||+                                                       ..|.......+..+|+
T Consensus        79 i~liDtpG~-------------------------------------------------------~~~~~~~~~~~~~~d~  103 (219)
T cd01883          79 FTILDAPGH-------------------------------------------------------RDFVPNMITGASQADV  103 (219)
T ss_pred             EEEEECCCh-------------------------------------------------------HHHHHHHHHHhhhCCE
Confidence            677999998                                                       3444444445678999


Q ss_pred             EEEEEeCCCcCC---HH---HHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524         192 FILVYAIDDPNS---FE---EIRLIRDHIFETKASTAVPIVVVGNKSDLAD  236 (592)
Q Consensus       192 iIlVyDvsd~~S---fe---~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~  236 (592)
                      +|+|+|+++...   |.   .....+..+..   ....|+|+|+||+|+..
T Consensus       104 ~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiivvNK~Dl~~  151 (219)
T cd01883         104 AVLVVDARKGEFEAGFEKGGQTREHALLART---LGVKQLIVAVNKMDDVT  151 (219)
T ss_pred             EEEEEECCCCccccccccccchHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence            999999998521   11   11222222222   12368999999999973

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>KOG0072|consensus

Probab=99.31  E-value=1.9e-12  Score=118.77  Aligned_cols=159  Identities=18%  Similarity=0.190  Sum_probs=112.9

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ...+|+++|-.|+||||++-++.-+..+. ..||++....   .+.-+...+++||..|+                    
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnve---~v~yKNLk~~vwdLggq--------------------   72 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNVE---TVPYKNLKFQVWDLGGQ--------------------   72 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCcc---ccccccccceeeEccCc--------------------
Confidence            56899999999999999999988666553 4566653221   12225577888999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHH-HHHHHHhhc
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLI-RDHIFETKA  219 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~-l~~L~~~~~  219 (592)
                                                         -..+..++.|+.+.|++|+|+|.+|.+...-.... +..|.+- .
T Consensus        73 -----------------------------------tSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~-e  116 (182)
T KOG0072|consen   73 -----------------------------------TSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEE-E  116 (182)
T ss_pred             -----------------------------------ccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccH-h
Confidence                                               66788999999999999999999998765444332 2223222 2


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHH--Hh-hcCCCeEEEcccCCC
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESV--VQ-VDWENGFVEASAKDN  296 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~l--a~-~~~~~~~~EvSAktg  296 (592)
                      -.+..+++++||.|....                                ....|....+  .+ ......+|++||.+|
T Consensus       117 Lq~a~llv~anKqD~~~~--------------------------------~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg  164 (182)
T KOG0072|consen  117 LQHAKLLVFANKQDYSGA--------------------------------LTRSEVLKMLGLQKLKDRIWQIVKTSAVKG  164 (182)
T ss_pred             hcCceEEEEeccccchhh--------------------------------hhHHHHHHHhChHHHhhheeEEEeeccccc
Confidence            345789999999997643                                1111111111  11 122356899999999


Q ss_pred             ccHHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQAK  311 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~  311 (592)
                      +|++++++++.+.+.
T Consensus       165 ~Gld~~~DWL~~~l~  179 (182)
T KOG0072|consen  165 EGLDPAMDWLQRPLK  179 (182)
T ss_pred             cCCcHHHHHHHHHHh
Confidence            999999999999874

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.30  E-value=5.6e-11  Score=128.73  Aligned_cols=58  Identities=19%  Similarity=0.334  Sum_probs=42.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEe---------------------eCC-eEEEEEEEeCCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFS---------------------MNG-VHLKLDILDTSG  119 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~---------------------vdg-~~v~L~I~DT~G  119 (592)
                      ++|+|||.+|||||||+|+|++..+. .+|..++.+.....+.                     .++ ..+.++||||||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            58999999999999999999977664 4666666544333322                     122 236788999999


Q ss_pred             C
Q psy1524         120 E  120 (592)
Q Consensus       120 ~  120 (592)
                      .
T Consensus        82 l   82 (396)
T PRK09602         82 L   82 (396)
T ss_pred             c
Confidence            8

>PRK12735 elongation factor Tu; Reviewed

Probab=99.30  E-value=2.9e-11  Score=131.21  Aligned_cols=161  Identities=15%  Similarity=0.134  Sum_probs=95.9

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcC-------CCC----------CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYN-------TFS----------PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ  121 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~-------~f~----------~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~  121 (592)
                      ..+.++|+++|..++|||||+++|++.       .+.          +.....+.+.....+..++  ..+.|+||||+ 
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~--~~i~~iDtPGh-   85 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETAN--RHYAHVDCPGH-   85 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCC--cEEEEEECCCH-
Confidence            356799999999999999999999852       110          0011122222222222334  34567999999 


Q ss_pred             CCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc
Q psy1524         122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP  201 (592)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~  201 (592)
                                                                            ++|.......+..+|++++|+|+++.
T Consensus        86 ------------------------------------------------------~~f~~~~~~~~~~aD~~llVvda~~g  111 (396)
T PRK12735         86 ------------------------------------------------------ADYVKNMITGAAQMDGAILVVSAADG  111 (396)
T ss_pred             ------------------------------------------------------HHHHHHHHhhhccCCEEEEEEECCCC
Confidence                                                                  45544444557789999999999875


Q ss_pred             CCHHHHHHHHHHHHHhhcCCCCCEE-EEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHH
Q psy1524         202 NSFEEIRLIRDHIFETKASTAVPIV-VVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVV  280 (592)
Q Consensus       202 ~Sfe~l~~~l~~L~~~~~~~~~PII-LVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la  280 (592)
                      ..- ....++..+..    .++|.+ +|+||+|+.++...                            .....++...+.
T Consensus       112 ~~~-qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~----------------------------~~~~~~ei~~~l  158 (396)
T PRK12735        112 PMP-QTREHILLARQ----VGVPYIVVFLNKCDMVDDEEL----------------------------LELVEMEVRELL  158 (396)
T ss_pred             Cch-hHHHHHHHHHH----cCCCeEEEEEEecCCcchHHH----------------------------HHHHHHHHHHHH
Confidence            322 22233333332    357755 68999999743110                            011112334443


Q ss_pred             hhc----CCCeEEEcccCCCc----------cHHHHHHHHHHH
Q psy1524         281 QVD----WENGFVEASAKDNT----------NITQVFKELLVQ  309 (592)
Q Consensus       281 ~~~----~~~~~~EvSAktg~----------gVeeLf~~Li~~  309 (592)
                      +..    ...+++++||++|.          ++.+|++.+...
T Consensus       159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~  201 (396)
T PRK12735        159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY  201 (396)
T ss_pred             HHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence            322    13679999999995          466666666554

>KOG0410|consensus

Probab=99.30  E-value=4.2e-12  Score=130.33  Aligned_cols=161  Identities=19%  Similarity=0.220  Sum_probs=120.9

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCC-CCCCccCceeeeEEEEEee-CCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNT-FSPKYKRTIEEMHHEDFSM-NGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~-f~~~~~~Tt~d~~~~~v~v-dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      .....-|++||++|+|||||+++|+... ++.+....|.|.......+ +|..+.+  .||.|+                
T Consensus       175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vll--tDTvGF----------------  236 (410)
T KOG0410|consen  175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLL--TDTVGF----------------  236 (410)
T ss_pred             cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEE--eechhh----------------
Confidence            3445689999999999999999999543 3456666777766666665 5555555  999999                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                             ++.+++.+..+|.++.++        +..||++|+|.|+++|.--+.....+..|..
T Consensus       237 -----------------------isdLP~~LvaAF~ATLee--------VaeadlllHvvDiShP~ae~q~e~Vl~vL~~  285 (410)
T KOG0410|consen  237 -----------------------ISDLPIQLVAAFQATLEE--------VAEADLLLHVVDISHPNAEEQRETVLHVLNQ  285 (410)
T ss_pred             -----------------------hhhCcHHHHHHHHHHHHH--------HhhcceEEEEeecCCccHHHHHHHHHHHHHh
Confidence                                   777888888899888887        7889999999999999988888888888877


Q ss_pred             hhcCCCCC----EEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcc
Q psy1524         217 TKASTAVP----IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEAS  292 (592)
Q Consensus       217 ~~~~~~~P----IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvS  292 (592)
                      + .-+..|    +|=|=||+|.....                                +..         ... .-+.+|
T Consensus       286 i-gv~~~pkl~~mieVdnkiD~e~~~--------------------------------~e~---------E~n-~~v~is  322 (410)
T KOG0410|consen  286 I-GVPSEPKLQNMIEVDNKIDYEEDE--------------------------------VEE---------EKN-LDVGIS  322 (410)
T ss_pred             c-CCCcHHHHhHHHhhcccccccccc--------------------------------Ccc---------ccC-Cccccc
Confidence            6 222333    56677888876541                                000         111 156789


Q ss_pred             cCCCccHHHHHHHHHHHHH
Q psy1524         293 AKDNTNITQVFKELLVQAK  311 (592)
Q Consensus       293 Aktg~gVeeLf~~Li~~i~  311 (592)
                      |++|.|++++...+-..+.
T Consensus       323 altgdgl~el~~a~~~kv~  341 (410)
T KOG0410|consen  323 ALTGDGLEELLKAEETKVA  341 (410)
T ss_pred             cccCccHHHHHHHHHHHhh
Confidence            9999999999988877764

>cd04169 RF3 RF3 subfamily

Probab=99.28  E-value=9.1e-11  Score=120.86  Aligned_cols=115  Identities=16%  Similarity=0.283  Sum_probs=76.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC--CCCCC--------ccCceee-----------eEEEEEeeCCeEEEEEEEeCCCCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN--TFSPK--------YKRTIEE-----------MHHEDFSMNGVHLKLDILDTSGEQ  121 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~--~f~~~--------~~~Tt~d-----------~~~~~v~vdg~~v~L~I~DT~G~~  121 (592)
                      -+|+|+|.+|+|||||+++|+..  .....        ...|+.|           .......++...+.++||||||+ 
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~-   81 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH-   81 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc-
Confidence            47999999999999999999842  11100        0111111           12223344445577888999999 


Q ss_pred             CCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc
Q psy1524         122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP  201 (592)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~  201 (592)
                                                                            ++|......+++.+|++|+|+|+++.
T Consensus        82 ------------------------------------------------------~df~~~~~~~l~~aD~~IlVvda~~g  107 (267)
T cd04169          82 ------------------------------------------------------EDFSEDTYRTLTAVDSAVMVIDAAKG  107 (267)
T ss_pred             ------------------------------------------------------hHHHHHHHHHHHHCCEEEEEEECCCC
Confidence                                                                  56666566678899999999999876


Q ss_pred             CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         202 NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       202 ~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      .. .....++..+.    ..++|+++++||+|+...
T Consensus       108 ~~-~~~~~i~~~~~----~~~~P~iivvNK~D~~~a  138 (267)
T cd04169         108 VE-PQTRKLFEVCR----LRGIPIITFINKLDREGR  138 (267)
T ss_pred             cc-HHHHHHHHHHH----hcCCCEEEEEECCccCCC
Confidence            43 22233443332    247899999999998654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.27  E-value=7.9e-11  Score=127.75  Aligned_cols=116  Identities=20%  Similarity=0.192  Sum_probs=73.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCC------------C-----CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTF------------S-----PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS  122 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f------------~-----~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~  122 (592)
                      ...++|+++|..++|||||+++|++...            .     +.....+.+.....+..++  ..+.|+||||+  
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~--~~i~~iDtPGh--   85 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEK--RHYAHVDCPGH--   85 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCC--cEEEEEECCCH--
Confidence            4579999999999999999999985210            0     0011222233222222233  45567999999  


Q ss_pred             CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC
Q psy1524         123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN  202 (592)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~  202 (592)
                                                                           ++|.......+..+|++++|+|+++..
T Consensus        86 -----------------------------------------------------~~f~~~~~~~~~~~d~~llVvd~~~g~  112 (394)
T PRK12736         86 -----------------------------------------------------ADYVKNMITGAAQMDGAILVVAATDGP  112 (394)
T ss_pred             -----------------------------------------------------HHHHHHHHHHHhhCCEEEEEEECCCCC
Confidence                                                                 555544444567899999999998643


Q ss_pred             CHHHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCccc
Q psy1524         203 SFEEIRLIRDHIFETKASTAVP-IVVVGNKSDLADE  237 (592)
Q Consensus       203 Sfe~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~~  237 (592)
                      .-. ...++..+..    .++| +|+|+||+|+.++
T Consensus       113 ~~~-t~~~~~~~~~----~g~~~~IvviNK~D~~~~  143 (394)
T PRK12736        113 MPQ-TREHILLARQ----VGVPYLVVFLNKVDLVDD  143 (394)
T ss_pred             chh-HHHHHHHHHH----cCCCEEEEEEEecCCcch
Confidence            222 2223333333    2567 7889999998743

>CHL00071 tufA elongation factor Tu

Probab=99.26  E-value=8.6e-11  Score=128.07  Aligned_cols=117  Identities=18%  Similarity=0.210  Sum_probs=74.8

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCC----------------C-CccCceeeeEEEEEeeCCeEEEEEEEeCCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFS----------------P-KYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ  121 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~----------------~-~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~  121 (592)
                      ....++|+++|..++|||||+++|++..-.                . .....+.+.....+..++.  .+.|+||||+ 
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~--~~~~iDtPGh-   85 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENR--HYAHVDCPGH-   85 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCe--EEEEEECCCh-
Confidence            356699999999999999999999953110                0 0111122222223333444  4556999998 


Q ss_pred             CCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc
Q psy1524         122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP  201 (592)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~  201 (592)
                                                                            .+|.......+..+|++++|+|++..
T Consensus        86 ------------------------------------------------------~~~~~~~~~~~~~~D~~ilVvda~~g  111 (409)
T CHL00071         86 ------------------------------------------------------ADYVKNMITGAAQMDGAILVVSAADG  111 (409)
T ss_pred             ------------------------------------------------------HHHHHHHHHHHHhCCEEEEEEECCCC
Confidence                                                                  44444445557889999999999865


Q ss_pred             CCHHHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCccc
Q psy1524         202 NSFEEIRLIRDHIFETKASTAVP-IVVVGNKSDLADE  237 (592)
Q Consensus       202 ~Sfe~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~~  237 (592)
                      .. ......+..+..    .++| +|+|.||+|+.+.
T Consensus       112 ~~-~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~  143 (409)
T CHL00071        112 PM-PQTKEHILLAKQ----VGVPNIVVFLNKEDQVDD  143 (409)
T ss_pred             Cc-HHHHHHHHHHHH----cCCCEEEEEEEccCCCCH
Confidence            32 222333333333    3578 7789999999754

>cd01850 CDC_Septin CDC/Septin

Probab=99.26  E-value=2.3e-11  Score=125.85  Aligned_cols=61  Identities=30%  Similarity=0.557  Sum_probs=48.6

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCC----------ccCcee-eeEEEEEeeCCeEEEEEEEeCCCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPK----------YKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQ  121 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~----------~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~  121 (592)
                      ..++|+|+|.+|+|||||+|+|++..+...          ..+|+. +.....+..++..+.++||||||++
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfg   74 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFG   74 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcc
Confidence            468999999999999999999998876532          344544 4555566678888999999999984

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.25  E-value=3.3e-11  Score=134.90  Aligned_cols=118  Identities=15%  Similarity=0.251  Sum_probs=78.2

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc--CCCC--CC------ccCcee-----------eeEEEEEeeCCeEEEEEEEeCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY--NTFS--PK------YKRTIE-----------EMHHEDFSMNGVHLKLDILDTS  118 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~--~~f~--~~------~~~Tt~-----------d~~~~~v~vdg~~v~L~I~DT~  118 (592)
                      ....+|+|+|..++|||||+++|+.  +...  ..      ...++.           ........++...+.++|||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            3567999999999999999999973  2111  00      000100           1112222333344677889999


Q ss_pred             CCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeC
Q psy1524         119 GEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAI  198 (592)
Q Consensus       119 G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDv  198 (592)
                      |+                                                       +.|......++..+|++|+|+|+
T Consensus        88 G~-------------------------------------------------------~df~~~~~~~l~~aD~aIlVvDa  112 (526)
T PRK00741         88 GH-------------------------------------------------------EDFSEDTYRTLTAVDSALMVIDA  112 (526)
T ss_pred             Cc-------------------------------------------------------hhhHHHHHHHHHHCCEEEEEEec
Confidence            99                                                       66666666778999999999999


Q ss_pred             CCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         199 DDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       199 sd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      ++...- ....++..+.    ..++|+|+++||+|+...
T Consensus       113 ~~gv~~-~t~~l~~~~~----~~~iPiiv~iNK~D~~~a  146 (526)
T PRK00741        113 AKGVEP-QTRKLMEVCR----LRDTPIFTFINKLDRDGR  146 (526)
T ss_pred             CCCCCH-HHHHHHHHHH----hcCCCEEEEEECCccccc
Confidence            876432 2333443332    347899999999998754

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.25  E-value=7.7e-11  Score=118.23  Aligned_cols=112  Identities=16%  Similarity=0.243  Sum_probs=77.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC--CCCCccC----------------ceeeeEEEEEee--------CCeEEEEEEEeC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNT--FSPKYKR----------------TIEEMHHEDFSM--------NGVHLKLDILDT  117 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~--f~~~~~~----------------Tt~d~~~~~v~v--------dg~~v~L~I~DT  117 (592)
                      +|+|+|..++|||||+.+|+...  +......                |+. .....+..        ++..+.++||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~-~~~~~~~~~~~~~~~~~~~~~~i~iiDT   80 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMK-SSAISLYFEYEEEDKADGNEYLINLIDS   80 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccc-cceEEEEEecCcccccCCCceEEEEECC
Confidence            69999999999999999998432  1111100                111 01111222        245788999999


Q ss_pred             CCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEe
Q psy1524         118 SGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYA  197 (592)
Q Consensus       118 ~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyD  197 (592)
                      ||+                                                       +.|......+++.+|++|+|||
T Consensus        81 PG~-------------------------------------------------------~~f~~~~~~~l~~aD~~ilVvD  105 (222)
T cd01885          81 PGH-------------------------------------------------------VDFSSEVTAALRLCDGALVVVD  105 (222)
T ss_pred             CCc-------------------------------------------------------cccHHHHHHHHHhcCeeEEEEE
Confidence            999                                                       6777788888999999999999


Q ss_pred             CCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524         198 IDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD  236 (592)
Q Consensus       198 vsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~  236 (592)
                      +++..+..... .+..+.    ..++|+|+|+||+|+..
T Consensus       106 ~~~g~~~~t~~-~l~~~~----~~~~p~ilviNKiD~~~  139 (222)
T cd01885         106 AVEGVCVQTET-VLRQAL----KERVKPVLVINKIDRLI  139 (222)
T ss_pred             CCCCCCHHHHH-HHHHHH----HcCCCEEEEEECCCcch
Confidence            99887665432 222222    23679999999999864

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.24  E-value=1.1e-10  Score=126.51  Aligned_cols=116  Identities=18%  Similarity=0.164  Sum_probs=73.3

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCC-------C-----C-----CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNT-------F-----S-----PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS  122 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~-------f-----~-----~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~  122 (592)
                      .+.++|+++|..++|||||+++|++..       +     .     +.....+.+...  +.++.....+.||||||+  
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~--~~~~~~~~~~~liDtpGh--   85 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAH--VEYETENRHYAHVDCPGH--   85 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEE--EEEcCCCEEEEEEECCch--
Confidence            567999999999999999999997320       0     0     011222223322  233333455677999999  


Q ss_pred             CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC
Q psy1524         123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN  202 (592)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~  202 (592)
                                                                           ++|..........+|++++|+|+++..
T Consensus        86 -----------------------------------------------------~~f~~~~~~~~~~~D~~ilVvda~~g~  112 (394)
T TIGR00485        86 -----------------------------------------------------ADYVKNMITGAAQMDGAILVVSATDGP  112 (394)
T ss_pred             -----------------------------------------------------HHHHHHHHHHHhhCCEEEEEEECCCCC
Confidence                                                                 555544444567889999999998743


Q ss_pred             CHHHHHHHHHHHHHhhcCCCCCE-EEEEeCCCCccc
Q psy1524         203 SFEEIRLIRDHIFETKASTAVPI-VVVGNKSDLADE  237 (592)
Q Consensus       203 Sfe~l~~~l~~L~~~~~~~~~PI-ILVgNK~DL~~~  237 (592)
                      .... ...+..+..    .++|. |+|+||+|+.++
T Consensus       113 ~~qt-~e~l~~~~~----~gi~~iIvvvNK~Dl~~~  143 (394)
T TIGR00485       113 MPQT-REHILLARQ----VGVPYIVVFLNKCDMVDD  143 (394)
T ss_pred             cHHH-HHHHHHHHH----cCCCEEEEEEEecccCCH
Confidence            3222 223333333    25665 478999998754

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG0462|consensus

Probab=99.24  E-value=9.6e-11  Score=127.27  Aligned_cols=160  Identities=19%  Similarity=0.243  Sum_probs=110.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC--CCCC---------C------ccCceeeeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSP---------K------YKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS  122 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~---------~------~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~  122 (592)
                      ++.-++.||-.-.-|||||..||+.-  ....         +      ---|+.-.....+..+++.+.|+++||||+  
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH--  135 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH--  135 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc--
Confidence            45668999999999999999999832  1111         0      111333344445555789999999999999  


Q ss_pred             CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC
Q psy1524         123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN  202 (592)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~  202 (592)
                                                                           -.|..--...+.-||++|+|+|++..-
T Consensus       136 -----------------------------------------------------vDFs~EVsRslaac~G~lLvVDA~qGv  162 (650)
T KOG0462|consen  136 -----------------------------------------------------VDFSGEVSRSLAACDGALLVVDASQGV  162 (650)
T ss_pred             -----------------------------------------------------ccccceehehhhhcCceEEEEEcCcCc
Confidence                                                                 333333344577899999999999876


Q ss_pred             CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh
Q psy1524         203 SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV  282 (592)
Q Consensus       203 Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~  282 (592)
                      --..+..++..+.     .+.-+|.|.||+|+...+.                             ..| ..+...+-. 
T Consensus       163 qAQT~anf~lAfe-----~~L~iIpVlNKIDlp~adp-----------------------------e~V-~~q~~~lF~-  206 (650)
T KOG0462|consen  163 QAQTVANFYLAFE-----AGLAIIPVLNKIDLPSADP-----------------------------ERV-ENQLFELFD-  206 (650)
T ss_pred             hHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCCH-----------------------------HHH-HHHHHHHhc-
Confidence            5555555555443     3688999999999987621                             011 111222211 


Q ss_pred             cCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         283 DWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       283 ~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      ....+++.+|||+|.|++++|+++++.+
T Consensus       207 ~~~~~~i~vSAK~G~~v~~lL~AII~rV  234 (650)
T KOG0462|consen  207 IPPAEVIYVSAKTGLNVEELLEAIIRRV  234 (650)
T ss_pred             CCccceEEEEeccCccHHHHHHHHHhhC
Confidence            2344689999999999999999999988

>PRK13351 elongation factor G; Reviewed

Probab=99.23  E-value=1.1e-10  Score=135.15  Aligned_cols=114  Identities=17%  Similarity=0.247  Sum_probs=80.6

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCC--C-----------CC-------CccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNT--F-----------SP-------KYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~--f-----------~~-------~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      ...+|+|+|..|+|||||+++|+...  .           ..       .+..|+. .....+..+  .+.++||||||+
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~-~~~~~~~~~--~~~i~liDtPG~   83 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIE-SAATSCDWD--NHRINLIDTPGH   83 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcc-cceEEEEEC--CEEEEEEECCCc
Confidence            45799999999999999999998421  1           00       0111222 111123333  467788999999


Q ss_pred             CCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC
Q psy1524         121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD  200 (592)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd  200 (592)
                                                                             .+|......+++.+|++|+|+|+++
T Consensus        84 -------------------------------------------------------~df~~~~~~~l~~aD~~ilVvd~~~  108 (687)
T PRK13351         84 -------------------------------------------------------IDFTGEVERSLRVLDGAVVVFDAVT  108 (687)
T ss_pred             -------------------------------------------------------HHHHHHHHHHHHhCCEEEEEEeCCC
Confidence                                                                   6677777888999999999999998


Q ss_pred             cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         201 PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       201 ~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      ..+......| ..+..    .++|+++|+||+|+...
T Consensus       109 ~~~~~~~~~~-~~~~~----~~~p~iiviNK~D~~~~  140 (687)
T PRK13351        109 GVQPQTETVW-RQADR----YGIPRLIFINKMDRVGA  140 (687)
T ss_pred             CCCHHHHHHH-HHHHh----cCCCEEEEEECCCCCCC
Confidence            8776654433 33333    36899999999998864

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.22  E-value=5.9e-11  Score=121.95  Aligned_cols=112  Identities=20%  Similarity=0.320  Sum_probs=74.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcc------Ccee-------------eeEEEEEeeCCeEEEEEEEeCCCCCCCC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYK------RTIE-------------EMHHEDFSMNGVHLKLDILDTSGEQSGK  124 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~------~Tt~-------------d~~~~~v~vdg~~v~L~I~DT~G~~~~~  124 (592)
                      +|+|+|.+|||||||+++|+...-.....      .++.             ......+..++  +.++||||||.    
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~----   74 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGY----   74 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCH----
Confidence            58999999999999999998432110000      0100             11122233344  56677999998    


Q ss_pred             cccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCH
Q psy1524         125 GLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSF  204 (592)
Q Consensus       125 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sf  204 (592)
                                                                         ..|......++..+|++|+|+|+++....
T Consensus        75 ---------------------------------------------------~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~  103 (268)
T cd04170          75 ---------------------------------------------------ADFVGETRAALRAADAALVVVSAQSGVEV  103 (268)
T ss_pred             ---------------------------------------------------HHHHHHHHHHHHHCCEEEEEEeCCCCCCH
Confidence                                                               55656666778999999999999987655


Q ss_pred             HHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         205 EEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       205 e~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      .... .+..+..    .++|+++|+||+|+...
T Consensus       104 ~~~~-~~~~~~~----~~~p~iivvNK~D~~~~  131 (268)
T cd04170         104 GTEK-LWEFADE----AGIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHH-HHHHHHH----cCCCEEEEEECCccCCC
Confidence            4333 3333332    36899999999998753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>TIGR00503 prfC peptide chain release factor 3

Probab=99.21  E-value=3.2e-10  Score=127.04  Aligned_cols=117  Identities=17%  Similarity=0.276  Sum_probs=77.9

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc--CCCCC------C--ccCcee-----------eeEEEEEeeCCeEEEEEEEeCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY--NTFSP------K--YKRTIE-----------EMHHEDFSMNGVHLKLDILDTS  118 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~--~~f~~------~--~~~Tt~-----------d~~~~~v~vdg~~v~L~I~DT~  118 (592)
                      ....+|+|+|.+++|||||+++|+.  +....      .  ...|+.           ........++...+.++|||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            4567999999999999999999862  22110      0  001111           1122233444555778889999


Q ss_pred             CCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeC
Q psy1524         119 GEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAI  198 (592)
Q Consensus       119 G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDv  198 (592)
                      |+                                                       ..|......++..+|++|+|+|+
T Consensus        89 G~-------------------------------------------------------~df~~~~~~~l~~aD~aIlVvDa  113 (527)
T TIGR00503        89 GH-------------------------------------------------------EDFSEDTYRTLTAVDNCLMVIDA  113 (527)
T ss_pred             Ch-------------------------------------------------------hhHHHHHHHHHHhCCEEEEEEEC
Confidence            99                                                       55666566678899999999999


Q ss_pred             CCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524         199 DDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD  236 (592)
Q Consensus       199 sd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~  236 (592)
                      ++... .....++..+..    .++|+|+++||+|+..
T Consensus       114 ~~gv~-~~t~~l~~~~~~----~~~PiivviNKiD~~~  146 (527)
T TIGR00503       114 AKGVE-TRTRKLMEVTRL----RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             CCCCC-HHHHHHHHHHHh----cCCCEEEEEECccccC
Confidence            87522 223344443322    4789999999999864

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.21  E-value=1.3e-10  Score=128.74  Aligned_cols=156  Identities=22%  Similarity=0.191  Sum_probs=90.7

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC--CCCCCc----------cCce----------------------eeeEEEEEee
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPKY----------KRTI----------------------EEMHHEDFSM  105 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~~----------~~Tt----------------------~d~~~~~v~v  105 (592)
                      ...++|+|+|..++|||||+.+|+..  ......          ..++                      -+.....+..
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            55699999999999999999999843  121100          1111                      1222222333


Q ss_pred             CCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHh
Q psy1524         106 NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALS  185 (592)
Q Consensus       106 dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~  185 (592)
                      ++  ..+.|+||||+                                                       +.|.......
T Consensus       105 ~~--~~i~~iDTPGh-------------------------------------------------------~~f~~~~~~~  127 (474)
T PRK05124        105 EK--RKFIIADTPGH-------------------------------------------------------EQYTRNMATG  127 (474)
T ss_pred             CC--cEEEEEECCCc-------------------------------------------------------HHHHHHHHHH
Confidence            44  45667999998                                                       5554444445


Q ss_pred             hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524         186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS  265 (592)
Q Consensus       186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  265 (592)
                      +..+|++|+|+|++....-.. ...+..+... .  ..|+|+|+||+|+...+...          +             
T Consensus       128 l~~aD~allVVDa~~G~~~qt-~~~~~l~~~l-g--~~~iIvvvNKiD~~~~~~~~----------~-------------  180 (474)
T PRK05124        128 ASTCDLAILLIDARKGVLDQT-RRHSFIATLL-G--IKHLVVAVNKMDLVDYSEEV----------F-------------  180 (474)
T ss_pred             HhhCCEEEEEEECCCCccccc-hHHHHHHHHh-C--CCceEEEEEeeccccchhHH----------H-------------
Confidence            689999999999976532111 1111112221 1  24799999999987431100          0             


Q ss_pred             CCCCCCChHHHHHHHhh---cCCCeEEEcccCCCccHHHHH
Q psy1524         266 GTPDQVPYDTTESVVQV---DWENGFVEASAKDNTNITQVF  303 (592)
Q Consensus       266 ~~~r~Vs~ee~~~la~~---~~~~~~~EvSAktg~gVeeLf  303 (592)
                          ....++...+.+.   ....+++++||++|.||+++-
T Consensus       181 ----~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        181 ----ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             ----HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence                0001112222221   124679999999999998753

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.19  E-value=2.2e-10  Score=118.25  Aligned_cols=112  Identities=16%  Similarity=0.206  Sum_probs=73.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC--CCC-----C------------CccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN--TFS-----P------------KYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGK  124 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~--~f~-----~------------~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~  124 (592)
                      +|+|+|.+|+|||||+++|+..  ...     .            .....+.+.....+..++  +.++|+||||+    
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~----   74 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGH----   74 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCc----
Confidence            5899999999999999999732  110     0            011111122223334455  45667999998    


Q ss_pred             cccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCH
Q psy1524         125 GLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSF  204 (592)
Q Consensus       125 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sf  204 (592)
                                                                         ..|......+++.+|++|+|+|+++...-
T Consensus        75 ---------------------------------------------------~df~~~~~~~l~~aD~ailVVDa~~g~~~  103 (270)
T cd01886          75 ---------------------------------------------------VDFTIEVERSLRVLDGAVAVFDAVAGVEP  103 (270)
T ss_pred             ---------------------------------------------------HHHHHHHHHHHHHcCEEEEEEECCCCCCH
Confidence                                                               44555566789999999999999876432


Q ss_pred             HHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         205 EEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       205 e~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      . ....+..+..    .++|+|++.||+|+...
T Consensus       104 ~-t~~~~~~~~~----~~~p~ivviNK~D~~~a  131 (270)
T cd01886         104 Q-TETVWRQADR----YNVPRIAFVNKMDRTGA  131 (270)
T ss_pred             H-HHHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence            2 2233333333    36899999999998753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.19  E-value=1.7e-10  Score=125.62  Aligned_cols=96  Identities=18%  Similarity=0.094  Sum_probs=54.6

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCC
Q psy1524         176 NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGL  255 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~  255 (592)
                      ++|.......+..+|++|+|+|++....-.. ...+..+...   ...++|+|+||+|+...+...          +   
T Consensus        91 ~~f~~~~~~~~~~aD~allVVda~~G~~~qt-~~~~~~~~~~---~~~~iivviNK~D~~~~~~~~----------~---  153 (406)
T TIGR02034        91 EQYTRNMATGASTADLAVLLVDARKGVLEQT-RRHSYIASLL---GIRHVVLAVNKMDLVDYDEEV----------F---  153 (406)
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCCCCcccc-HHHHHHHHHc---CCCcEEEEEEecccccchHHH----------H---
Confidence            5665444456789999999999976532111 1112222222   234689999999987531100          0   


Q ss_pred             CCccccccCCCCCCCCChHHHHHHHhhc--CCCeEEEcccCCCccHHHH
Q psy1524         256 PDSVCAHQISGTPDQVPYDTTESVVQVD--WENGFVEASAKDNTNITQV  302 (592)
Q Consensus       256 ~~~~~~~~~~~~~r~Vs~ee~~~la~~~--~~~~~~EvSAktg~gVeeL  302 (592)
                                    ....++...+.+..  ...+++++||++|.|++++
T Consensus       154 --------------~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       154 --------------ENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             --------------HHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence                          00012222222211  2356999999999999863

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PLN03127 Elongation factor Tu; Provisional

Probab=99.19  E-value=5.1e-10  Score=123.22  Aligned_cols=116  Identities=18%  Similarity=0.166  Sum_probs=73.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC------CC------C-----CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN------TF------S-----PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS  122 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~------~f------~-----~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~  122 (592)
                      ...++|+++|..++|||||+++|.+-      ..      .     +.....+.+.....+..++.  .+.|+||||+  
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~--~i~~iDtPGh--  134 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKR--HYAHVDCPGH--  134 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCe--EEEEEECCCc--
Confidence            56799999999999999999999721      10      0     11122233433333444444  4566999999  


Q ss_pred             CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC
Q psy1524         123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN  202 (592)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~  202 (592)
                                                                           .+|.......+..+|++++|+|+++..
T Consensus       135 -----------------------------------------------------~~f~~~~~~g~~~aD~allVVda~~g~  161 (447)
T PLN03127        135 -----------------------------------------------------ADYVKNMITGAAQMDGGILVVSAPDGP  161 (447)
T ss_pred             -----------------------------------------------------cchHHHHHHHHhhCCEEEEEEECCCCC
Confidence                                                                 344333333456799999999998654


Q ss_pred             CHHHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCccc
Q psy1524         203 SFEEIRLIRDHIFETKASTAVP-IVVVGNKSDLADE  237 (592)
Q Consensus       203 Sfe~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~~  237 (592)
                      .- .....+..+..    .++| +|+|.||+|+.++
T Consensus       162 ~~-qt~e~l~~~~~----~gip~iIvviNKiDlv~~  192 (447)
T PLN03127        162 MP-QTKEHILLARQ----VGVPSLVVFLNKVDVVDD  192 (447)
T ss_pred             ch-hHHHHHHHHHH----cCCCeEEEEEEeeccCCH
Confidence            32 22333333333    3678 5789999999753

>KOG0090|consensus

Probab=99.18  E-value=3.3e-11  Score=117.63  Aligned_cols=186  Identities=17%  Similarity=0.237  Sum_probs=109.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      -.|+++|.+++|||+|+.+|..+.+...+. .+ ......+.+++..  +.++|.||+                      
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt-Si-epn~a~~r~gs~~--~~LVD~PGH----------------------   92 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT-SI-EPNEATYRLGSEN--VTLVDLPGH----------------------   92 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeee-ee-ccceeeEeecCcc--eEEEeCCCc----------------------
Confidence            379999999999999999999885543221 11 1222334444444  556999999                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh---cCCcEEEEEeCC-CcCCHHHHHH-HHHHHHHh
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS---SADAFILVYAID-DPNSFEEIRL-IRDHIFET  217 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~---~AD~iIlVyDvs-d~~Sfe~l~~-~l~~L~~~  217 (592)
                                                       ++.+.-..-++.   .+-++|||+|.. ......++.. +++.+...
T Consensus        93 ---------------------------------~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~  139 (238)
T KOG0090|consen   93 ---------------------------------SRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDS  139 (238)
T ss_pred             ---------------------------------HHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhh
Confidence                                             444433333444   789999999974 3333444444 45544443


Q ss_pred             h-cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccC----CCCCCCCChHHHH--HHHhhc-CCCeEE
Q psy1524         218 K-ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQI----SGTPDQVPYDTTE--SVVQVD-WENGFV  289 (592)
Q Consensus       218 ~-~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~r~Vs~ee~~--~la~~~-~~~~~~  289 (592)
                      . ....+|+++++||.|+.... ..+....++..+++.+..+.++...    +...+...-.++.  .+.... ....|.
T Consensus       140 ~~~~~~~~vLIaCNKqDl~tAk-t~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~  218 (238)
T KOG0090|consen  140 RVKKNKPPVLIACNKQDLFTAK-TAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFA  218 (238)
T ss_pred             ccccCCCCEEEEecchhhhhcC-cHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEe
Confidence            2 24578999999999998652 1112222344444444444441111    1111111112222  222222 456799


Q ss_pred             EcccCCCccHHHHHHHHHHH
Q psy1524         290 EASAKDNTNITQVFKELLVQ  309 (592)
Q Consensus       290 EvSAktg~gVeeLf~~Li~~  309 (592)
                      ++|++++ +++++-+++.+.
T Consensus       219 e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  219 EASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ecccCcC-ChHHHHHHHHHh
Confidence            9999999 899998888654

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.18  E-value=3.4e-11  Score=116.77  Aligned_cols=117  Identities=19%  Similarity=0.317  Sum_probs=68.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEee-CCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~v-dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      -.|+|+|++|+|||+|+.+|+.+.+.+..... ....  .+.+ +...-.+.++|+||+                     
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~--~~~~~~~~~~~~~lvD~PGH---------------------   59 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI--AYNVNNSKGKKLRLVDIPGH---------------------   59 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE--ECCGSSTCGTCECEEEETT----------------------
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc--eEEeecCCCCEEEEEECCCc---------------------
Confidence            47999999999999999999998665433222 2221  1222 222234566999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhH-HHHH--hhhcCCcEEEEEeCCC-cCCHHHHHHHHHHHHHh
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPA-MRAL--SISSADAFILVYAIDD-PNSFEEIRLIRDHIFET  217 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-l~~~--~~~~AD~iIlVyDvsd-~~Sfe~l~~~l~~L~~~  217 (592)
                                                        ++.+. +...  +...+.+||||+|.+. ...+.++..++-.+...
T Consensus        60 ----------------------------------~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~  105 (181)
T PF09439_consen   60 ----------------------------------PRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSD  105 (181)
T ss_dssp             ----------------------------------HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------HHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHh
Confidence                                              33333 2222  5788999999999873 34455554443333332


Q ss_pred             h--cCCCCCEEEEEeCCCCccc
Q psy1524         218 K--ASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       218 ~--~~~~~PIILVgNK~DL~~~  237 (592)
                      .  ....+|++|++||+|+...
T Consensus       106 ~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen  106 TEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             HHCCTT--EEEEEEE-TTSTT-
T ss_pred             hhhccCCCCEEEEEeCcccccc
Confidence            2  2467899999999999865

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PLN03126 Elongation factor Tu; Provisional

Probab=99.17  E-value=7.2e-10  Score=122.84  Aligned_cols=118  Identities=15%  Similarity=0.160  Sum_probs=76.3

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCC------CCC-----------CccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNT------FSP-----------KYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~------f~~-----------~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      .....++|+++|..++|||||+++|+...      ...           .....+.+.....+..++  ..+.|+||||+
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh  154 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGH  154 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCH
Confidence            34667999999999999999999999521      111           011111122222233344  45567999999


Q ss_pred             CCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC
Q psy1524         121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD  200 (592)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd  200 (592)
                                                                             ++|.......+..+|++++|+|+++
T Consensus       155 -------------------------------------------------------~~f~~~~~~g~~~aD~ailVVda~~  179 (478)
T PLN03126        155 -------------------------------------------------------ADYVKNMITGAAQMDGAILVVSGAD  179 (478)
T ss_pred             -------------------------------------------------------HHHHHHHHHHHhhCCEEEEEEECCC
Confidence                                                                   5565555556778999999999987


Q ss_pred             cCCHHHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCccc
Q psy1524         201 PNSFEEIRLIRDHIFETKASTAVP-IVVVGNKSDLADE  237 (592)
Q Consensus       201 ~~Sfe~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~~  237 (592)
                      ...- ....++..+..    .++| +|+|.||+|+.+.
T Consensus       180 G~~~-qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~  212 (478)
T PLN03126        180 GPMP-QTKEHILLAKQ----VGVPNMVVFLNKQDQVDD  212 (478)
T ss_pred             CCcH-HHHHHHHHHHH----cCCCeEEEEEecccccCH
Confidence            6432 22333333333    3577 7889999999753

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.17  E-value=4.7e-10  Score=109.75  Aligned_cols=176  Identities=16%  Similarity=0.221  Sum_probs=99.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC-CC--ccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFS-PK--YKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~-~~--~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ++|+|+|.+|||||||+|.+++.... ..  ..+.+.+.......+++..+  .|+||||..+....             
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i--~viDTPG~~d~~~~-------------   65 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRV--NVIDTPGLFDTSVS-------------   65 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEE--EEEECcCCCCccCC-------------
Confidence            47999999999999999999977543 22  12334443444455677554  55999998321100             


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                      .+  .+.                             ............++|++|+|+|+.+ -+-++ ...+..+.+..+
T Consensus        66 ~~--~~~-----------------------------~~i~~~~~~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg  112 (196)
T cd01852          66 PE--QLS-----------------------------KEIVRCLSLSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFG  112 (196)
T ss_pred             hH--HHH-----------------------------HHHHHHHHhcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhC
Confidence            00  000                             1111112223467899999999986 33222 334455544422


Q ss_pred             C-CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcc-----c
Q psy1524         220 S-TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEAS-----A  293 (592)
Q Consensus       220 ~-~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvS-----A  293 (592)
                      . .-.++|+|.|++|.....        ....++.                .. ....+.+.+. .+..|+..+     +
T Consensus       113 ~~~~~~~ivv~T~~d~l~~~--------~~~~~~~----------------~~-~~~l~~l~~~-c~~r~~~f~~~~~~~  166 (196)
T cd01852         113 EKVLDHTIVLFTRGDDLEGG--------TLEDYLE----------------NS-CEALKRLLEK-CGGRYVAFNNKAKGE  166 (196)
T ss_pred             hHhHhcEEEEEECccccCCC--------cHHHHHH----------------hc-cHHHHHHHHH-hCCeEEEEeCCCCcc
Confidence            1 125889999999976541        1111111                01 1223333332 222343333     5


Q ss_pred             CCCccHHHHHHHHHHHHHH
Q psy1524         294 KDNTNITQVFKELLVQAKV  312 (592)
Q Consensus       294 ktg~gVeeLf~~Li~~i~~  312 (592)
                      ..+.+|++|++.+.+.+..
T Consensus       167 ~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         167 EQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             hhHHHHHHHHHHHHHHHHh
Confidence            6788999999999988865

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.17  E-value=1.2e-10  Score=103.74  Aligned_cols=49  Identities=24%  Similarity=0.399  Sum_probs=38.6

Q ss_pred             hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      ++.++.+++|||.++..+++.+  |...+... ...++|+++++||.|+.+.
T Consensus        44 ~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~   92 (124)
T smart00010       44 YESFDVVLQCWRVDDRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEE   92 (124)
T ss_pred             cCCCCEEEEEEEccCHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhh
Confidence            5678999999999999998776  66655543 3467899999999998543

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.16  E-value=4.3e-10  Score=122.09  Aligned_cols=115  Identities=18%  Similarity=0.188  Sum_probs=73.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC-----------------CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS-----------------PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS  122 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~-----------------~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~  122 (592)
                      ...++|+++|..++|||||+++|+.....                 +.....+.+.....+..++.  .+.|+||||+  
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~--~i~~iDtPG~--   85 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKR--HYAHVDCPGH--   85 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCe--EEEEEECCCH--
Confidence            56799999999999999999999963110                 00112222332222333443  4556999999  


Q ss_pred             CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC
Q psy1524         123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN  202 (592)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~  202 (592)
                                                                           .+|.......+..+|++++|+|+++..
T Consensus        86 -----------------------------------------------------~~f~~~~~~~~~~aD~~llVVDa~~g~  112 (396)
T PRK00049         86 -----------------------------------------------------ADYVKNMITGAAQMDGAILVVSAADGP  112 (396)
T ss_pred             -----------------------------------------------------HHHHHHHHhhhccCCEEEEEEECCCCC
Confidence                                                                 444444445578899999999998753


Q ss_pred             CHHHHHHHHHHHHHhhcCCCCCEE-EEEeCCCCcc
Q psy1524         203 SFEEIRLIRDHIFETKASTAVPIV-VVGNKSDLAD  236 (592)
Q Consensus       203 Sfe~l~~~l~~L~~~~~~~~~PII-LVgNK~DL~~  236 (592)
                      . .....++..+..    .++|++ ++.||+|+.+
T Consensus       113 ~-~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~  142 (396)
T PRK00049        113 M-PQTREHILLARQ----VGVPYIVVFLNKCDMVD  142 (396)
T ss_pred             c-hHHHHHHHHHHH----cCCCEEEEEEeecCCcc
Confidence            3 222333343433    257865 6899999974

>KOG0077|consensus

Probab=99.15  E-value=1.1e-10  Score=109.67  Aligned_cols=115  Identities=21%  Similarity=0.380  Sum_probs=92.4

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCC---CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFS---PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~---~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      +.-|++++|-.|+|||||++.|-.+...   +...||.     ..+.+.+  ++++-.|.+|+                 
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTS-----E~l~Ig~--m~ftt~DLGGH-----------------   74 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS-----EELSIGG--MTFTTFDLGGH-----------------   74 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccccccCCCcCCCh-----HHheecC--ceEEEEccccH-----------------
Confidence            3459999999999999999999876543   3334444     3445666  45566999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            ..-+..+..|+..+|++++.+|+-|.+.|.+.+..++.+...
T Consensus        75 --------------------------------------~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~  116 (193)
T KOG0077|consen   75 --------------------------------------LQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSD  116 (193)
T ss_pred             --------------------------------------HHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhH
Confidence                                                  455678888999999999999999999999988888877765


Q ss_pred             hcCCCCCEEEEEeCCCCccc
Q psy1524         218 KASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~  237 (592)
                      ......|+++.+||+|....
T Consensus       117 e~la~vp~lilgnKId~p~a  136 (193)
T KOG0077|consen  117 ESLATVPFLILGNKIDIPYA  136 (193)
T ss_pred             HHHhcCcceeecccccCCCc
Confidence            45578999999999998865

>KOG1490|consensus

Probab=99.15  E-value=2.2e-10  Score=123.33  Aligned_cols=177  Identities=17%  Similarity=0.126  Sum_probs=119.3

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ..+..-.++|+|.+|||||||+|..+.... +..|..|+.-.+...+  +-.-..++++||||.-+-             
T Consensus       164 IDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~--dykYlrwQViDTPGILD~-------------  228 (620)
T KOG1490|consen  164 IDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHL--DYKYLRWQVIDTPGILDR-------------  228 (620)
T ss_pred             CCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhh--hhheeeeeecCCccccCc-------------
Confidence            345667999999999999999999986654 4677777764444332  334456788999998211             


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc--CCHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP--NSFEEIRLIRDHI  214 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~--~Sfe~l~~~l~~L  214 (592)
                                      |....++                .+..++..+.-- -.+++++.|++..  .|.+....++..|
T Consensus       229 ----------------plEdrN~----------------IEmqsITALAHL-raaVLYfmDLSe~CGySva~QvkLfhsI  275 (620)
T KOG1490|consen  229 ----------------PEEDRNI----------------IEMQIITALAHL-RSAVLYFMDLSEMCGYSVAAQVKLYHSI  275 (620)
T ss_pred             ----------------chhhhhH----------------HHHHHHHHHHHh-hhhheeeeechhhhCCCHHHHHHHHHHh
Confidence                            0001000                223333333222 2478888999864  5777777788888


Q ss_pred             HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHH--HHHhhcCCCeEEEcc
Q psy1524         215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTE--SVVQVDWENGFVEAS  292 (592)
Q Consensus       215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~--~la~~~~~~~~~EvS  292 (592)
                      +...  .+.|+|+|+||+|+...                               ..++.+...  +......+.+++++|
T Consensus       276 KpLF--aNK~~IlvlNK~D~m~~-------------------------------edL~~~~~~ll~~~~~~~~v~v~~tS  322 (620)
T KOG1490|consen  276 KPLF--ANKVTILVLNKIDAMRP-------------------------------EDLDQKNQELLQTIIDDGNVKVVQTS  322 (620)
T ss_pred             HHHh--cCCceEEEeecccccCc-------------------------------cccCHHHHHHHHHHHhccCceEEEec
Confidence            7764  47899999999999865                               223333322  222335567899999


Q ss_pred             cCCCccHHHHHHHHHHHHHHhcc
Q psy1524         293 AKDNTNITQVFKELLVQAKVKYN  315 (592)
Q Consensus       293 Aktg~gVeeLf~~Li~~i~~~~~  315 (592)
                      +.+.+||.++-...++.++..+-
T Consensus       323 ~~~eegVm~Vrt~ACe~LLa~RV  345 (620)
T KOG1490|consen  323 CVQEEGVMDVRTTACEALLAARV  345 (620)
T ss_pred             ccchhceeeHHHHHHHHHHHHHH
Confidence            99999999999988888876543

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.14  E-value=5.8e-10  Score=122.78  Aligned_cols=155  Identities=18%  Similarity=0.253  Sum_probs=95.3

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC--CCCC------------------------C------ccCceeeeEEEEEeeCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSP------------------------K------YKRTIEEMHHEDFSMNG  107 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~------------------------~------~~~Tt~d~~~~~v~vdg  107 (592)
                      ...++|+++|..++|||||+-+|+..  ....                        +      ....+-+...  ..+..
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~--~~~~~   82 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIAL--WKFET   82 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEE--EEecC
Confidence            45689999999999999999999832  1110                        0      0000111111  22333


Q ss_pred             eEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh
Q psy1524         108 VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS  187 (592)
Q Consensus       108 ~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~  187 (592)
                      ....++|+||||+                                                       ++|.......+.
T Consensus        83 ~~~~i~liDtPGh-------------------------------------------------------~df~~~~~~g~~  107 (447)
T PLN00043         83 TKYYCTVIDAPGH-------------------------------------------------------RDFIKNMITGTS  107 (447)
T ss_pred             CCEEEEEEECCCH-------------------------------------------------------HHHHHHHHhhhh
Confidence            4467778999999                                                       788877788889


Q ss_pred             cCCcEEEEEeCCCcCCHH-------HHHHHHHHHHHhhcCCCC-CEEEEEeCCCCcccccccccCCCCcccccCCCCCcc
Q psy1524         188 SADAFILVYAIDDPNSFE-------EIRLIRDHIFETKASTAV-PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSV  259 (592)
Q Consensus       188 ~AD~iIlVyDvsd~~Sfe-------~l~~~l~~L~~~~~~~~~-PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~  259 (592)
                      .+|++|+|+|+++ .+|+       .....+..+..    .++ ++|+|+||+|+.+..  +.      ...+       
T Consensus       108 ~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~~~~~--~~------~~~~-------  167 (447)
T PLN00043        108 QADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDATTPK--YS------KARY-------  167 (447)
T ss_pred             hccEEEEEEEccc-CceecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccCCchh--hh------HHHH-------
Confidence            9999999999987 3332       23333332222    255 578899999986220  00      0000       


Q ss_pred             ccccCCCCCCCCChHHHHHHHhhcC----CCeEEEcccCCCccHHH
Q psy1524         260 CAHQISGTPDQVPYDTTESVVQVDW----ENGFVEASAKDNTNITQ  301 (592)
Q Consensus       260 ~~~~~~~~~r~Vs~ee~~~la~~~~----~~~~~EvSAktg~gVee  301 (592)
                               .. ..+++..+++...    ..+|+++||++|.||.+
T Consensus       168 ---------~~-i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        168 ---------DE-IVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             ---------HH-HHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence                     00 1234444444222    36799999999999864

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.14  E-value=3.2e-10  Score=130.03  Aligned_cols=57  Identities=19%  Similarity=0.081  Sum_probs=35.1

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524         176 NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD  236 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~  236 (592)
                      ++|.......+..+|++|+|+|+++...-. ....+..+...   ...++|||+||+|+.+
T Consensus       115 ~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~---~~~~iivvvNK~D~~~  171 (632)
T PRK05506        115 EQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLL---GIRHVVLAVNKMDLVD  171 (632)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHh---CCCeEEEEEEeccccc
Confidence            455443444578899999999997653211 11122222222   2357899999999974

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=1.1e-09  Score=119.63  Aligned_cols=166  Identities=27%  Similarity=0.303  Sum_probs=110.8

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      +.+-|+++|.-.-|||||+..+-+..........+. ...-..+.++ +..-.+.|+||||+                  
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH------------------   65 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH------------------   65 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcH------------------
Confidence            446799999999999999999998877655554443 3333334443 12235567999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           +.|..|+..-..-+|++|||+|++|.---..++. +..+    
T Consensus        66 -------------------------------------eAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEA-I~ha----  103 (509)
T COG0532          66 -------------------------------------EAFTAMRARGASVTDIAILVVAADDGVMPQTIEA-INHA----  103 (509)
T ss_pred             -------------------------------------HHHHHHHhcCCccccEEEEEEEccCCcchhHHHH-HHHH----
Confidence                                                 8999999998889999999999998532222221 1112    


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      ...++|+|++.||+|..+.+...      ....+++              ..+.   .+.|   .....++++||++|+|
T Consensus       104 k~a~vP~iVAiNKiDk~~~np~~------v~~el~~--------------~gl~---~E~~---gg~v~~VpvSA~tg~G  157 (509)
T COG0532         104 KAAGVPIVVAINKIDKPEANPDK------VKQELQE--------------YGLV---PEEW---GGDVIFVPVSAKTGEG  157 (509)
T ss_pred             HHCCCCEEEEEecccCCCCCHHH------HHHHHHH--------------cCCC---Hhhc---CCceEEEEeeccCCCC
Confidence            23589999999999998652110      0000000              0000   0111   2245699999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQAKV  312 (592)
Q Consensus       299 VeeLf~~Li~~i~~  312 (592)
                      +++|++.++-.+..
T Consensus       158 i~eLL~~ill~aev  171 (509)
T COG0532         158 IDELLELILLLAEV  171 (509)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988776643

>KOG1145|consensus

Probab=99.10  E-value=1.4e-09  Score=118.19  Aligned_cols=165  Identities=25%  Similarity=0.299  Sum_probs=112.5

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee---eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE---EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP  135 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~---d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~  135 (592)
                      .++..-|.|+|--.-|||||+..|.+..........+.   --+...+. +|+.+.|  .||||+               
T Consensus       150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTF--LDTPGH---------------  211 (683)
T KOG1145|consen  150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITF--LDTPGH---------------  211 (683)
T ss_pred             CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEE--ecCCcH---------------
Confidence            34667899999999999999999998877644444333   12223333 6765555  999999               


Q ss_pred             CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524         136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF  215 (592)
Q Consensus       136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~  215 (592)
                                                              ..|.+|+..-..-+|++++|+.++|.---..+    +.|.
T Consensus       212 ----------------------------------------aAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~----EaIk  247 (683)
T KOG1145|consen  212 ----------------------------------------AAFSAMRARGANVTDIVVLVVAADDGVMPQTL----EAIK  247 (683)
T ss_pred             ----------------------------------------HHHHHHHhccCccccEEEEEEEccCCccHhHH----HHHH
Confidence                                                    88999999999999999999999886432222    2222


Q ss_pred             HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524         216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD  295 (592)
Q Consensus       216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt  295 (592)
                      .. ...+.|||++.||||....+...      ....|                    ...+...-......+++++||++
T Consensus       248 hA-k~A~VpiVvAinKiDkp~a~pek------v~~eL--------------------~~~gi~~E~~GGdVQvipiSAl~  300 (683)
T KOG1145|consen  248 HA-KSANVPIVVAINKIDKPGANPEK------VKREL--------------------LSQGIVVEDLGGDVQVIPISALT  300 (683)
T ss_pred             HH-HhcCCCEEEEEeccCCCCCCHHH------HHHHH--------------------HHcCccHHHcCCceeEEEeeccc
Confidence            22 34689999999999987652110      00000                    00011111224466799999999


Q ss_pred             CccHHHHHHHHHHHHHH
Q psy1524         296 NTNITQVFKELLVQAKV  312 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~~  312 (592)
                      |.|++.|-+.++-++..
T Consensus       301 g~nl~~L~eaill~Ae~  317 (683)
T KOG1145|consen  301 GENLDLLEEAILLLAEV  317 (683)
T ss_pred             CCChHHHHHHHHHHHHH
Confidence            99999999988877644

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.07  E-value=2.2e-09  Score=115.19  Aligned_cols=159  Identities=19%  Similarity=0.238  Sum_probs=105.3

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcC--CCCC-----Cc----------cCceee-eEEEEEee-CCeEEEEEEEeCCCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYN--TFSP-----KY----------KRTIEE-MHHEDFSM-NGVHLKLDILDTSGEQ  121 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~--~f~~-----~~----------~~Tt~d-~~~~~v~v-dg~~v~L~I~DT~G~~  121 (592)
                      +.-+++|+-.-.-|||||..|++..  .+.+     ..          --|+.- ..+-.+.. +|..|.|+++||||+ 
T Consensus         8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH-   86 (603)
T COG0481           8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH-   86 (603)
T ss_pred             hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc-
Confidence            3447788888899999999999843  2211     11          112221 11112222 678999999999999 


Q ss_pred             CCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc
Q psy1524         122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP  201 (592)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~  201 (592)
                                                                            -.|.--....+..|.+.|+|+|++..
T Consensus        87 ------------------------------------------------------VDFsYEVSRSLAACEGalLvVDAsQG  112 (603)
T COG0481          87 ------------------------------------------------------VDFSYEVSRSLAACEGALLVVDASQG  112 (603)
T ss_pred             ------------------------------------------------------cceEEEehhhHhhCCCcEEEEECccc
Confidence                                                                  22332233346779999999999988


Q ss_pred             CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh
Q psy1524         202 NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ  281 (592)
Q Consensus       202 ~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~  281 (592)
                      -.-..+...|..+..     +.-||-|.||+||...+..                             . ...+.+...-
T Consensus       113 veAQTlAN~YlAle~-----~LeIiPViNKIDLP~Adpe-----------------------------r-vk~eIe~~iG  157 (603)
T COG0481         113 VEAQTLANVYLALEN-----NLEIIPVLNKIDLPAADPE-----------------------------R-VKQEIEDIIG  157 (603)
T ss_pred             hHHHHHHHHHHHHHc-----CcEEEEeeecccCCCCCHH-----------------------------H-HHHHHHHHhC
Confidence            766666666666543     6789999999999876210                             0 0112222211


Q ss_pred             hcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         282 VDWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       282 ~~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                       ......+.||||+|.||+++++.+++.+
T Consensus       158 -id~~dav~~SAKtG~gI~~iLe~Iv~~i  185 (603)
T COG0481         158 -IDASDAVLVSAKTGIGIEDVLEAIVEKI  185 (603)
T ss_pred             -CCcchheeEecccCCCHHHHHHHHHhhC
Confidence             1233478999999999999999999987

>PRK12739 elongation factor G; Reviewed

Probab=99.07  E-value=4.1e-09  Score=122.15  Aligned_cols=116  Identities=18%  Similarity=0.219  Sum_probs=78.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC--CCC-----C------------CccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFS-----P------------KYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~-----~------------~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      ....+|+|+|..++|||||+++|+..  ...     .            .....+.+.....+..++.  .++|+||||+
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~--~i~liDTPG~   83 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGH--RINIIDTPGH   83 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCE--EEEEEcCCCH
Confidence            35679999999999999999999742  110     0            1112222444444555664  4566999999


Q ss_pred             CCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC
Q psy1524         121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD  200 (592)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd  200 (592)
                                                                             ..|.......+..+|++|+|+|+++
T Consensus        84 -------------------------------------------------------~~f~~e~~~al~~~D~~ilVvDa~~  108 (691)
T PRK12739         84 -------------------------------------------------------VDFTIEVERSLRVLDGAVAVFDAVS  108 (691)
T ss_pred             -------------------------------------------------------HHHHHHHHHHHHHhCeEEEEEeCCC
Confidence                                                                   4455556667889999999999987


Q ss_pred             cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         201 PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       201 ~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      ...-... ..+..+..    .++|+|+++||+|+...
T Consensus       109 g~~~qt~-~i~~~~~~----~~~p~iv~iNK~D~~~~  140 (691)
T PRK12739        109 GVEPQSE-TVWRQADK----YGVPRIVFVNKMDRIGA  140 (691)
T ss_pred             CCCHHHH-HHHHHHHH----cCCCEEEEEECCCCCCC
Confidence            6543332 23333322    36899999999999854

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.06  E-value=2.7e-10  Score=115.94  Aligned_cols=97  Identities=13%  Similarity=0.188  Sum_probs=77.9

Q ss_pred             CcchhHHHHHhhhcCCcEEEEEeCCCcC-CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccC
Q psy1524         175 TNEFPAMRALSISSADAFILVYAIDDPN-SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLS  253 (592)
Q Consensus       175 ~e~~~~l~~~~~~~AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~  253 (592)
                      .++|..+.+.+++++|++++|||++++. ||..+..|+..+..    .++|+|||+||+||.+.                
T Consensus        23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~----------------   82 (245)
T TIGR00157        23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDD----------------   82 (245)
T ss_pred             ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCC----------------
Confidence            3788888888999999999999999887 89999999876543    47899999999999754                


Q ss_pred             CCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHH
Q psy1524         254 GLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLV  308 (592)
Q Consensus       254 ~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~  308 (592)
                                     +.+..+.+..+.  ..+..++++||++|.||+++|+.+..
T Consensus        83 ---------------~~~~~~~~~~~~--~~g~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        83 ---------------EDMEKEQLDIYR--NIGYQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             ---------------HHHHHHHHHHHH--HCCCeEEEEecCCchhHHHHHhhhcC
Confidence                           233334444443  25678999999999999999987754

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.05  E-value=1.9e-09  Score=124.90  Aligned_cols=115  Identities=16%  Similarity=0.174  Sum_probs=78.4

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcC--CCC-----CC------------ccCceeeeEEEEEeeCCeEEEEEEEeCCCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYN--TFS-----PK------------YKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ  121 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~--~f~-----~~------------~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~  121 (592)
                      ...+|+|+|..|+|||||+++|+..  ...     ..            ...++.+.....+..++  +.++||||||+ 
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~-   85 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGH-   85 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCC-
Confidence            4569999999999999999999732  110     00            11122233334445555  45667999999 


Q ss_pred             CCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc
Q psy1524         122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP  201 (592)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~  201 (592)
                                                                            .+|......++..+|++|+|+|+++.
T Consensus        86 ------------------------------------------------------~~~~~~~~~~l~~~D~~ilVvda~~g  111 (689)
T TIGR00484        86 ------------------------------------------------------VDFTVEVERSLRVLDGAVAVLDAVGG  111 (689)
T ss_pred             ------------------------------------------------------cchhHHHHHHHHHhCEEEEEEeCCCC
Confidence                                                                  44555566678999999999999987


Q ss_pred             CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         202 NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       202 ~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      ....... ++..+..    .++|+|+|+||+|+...
T Consensus       112 ~~~~~~~-~~~~~~~----~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484       112 VQPQSET-VWRQANR----YEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             CChhHHH-HHHHHHH----cCCCEEEEEECCCCCCC
Confidence            6554433 3333333    36899999999999754

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.04  E-value=3.6e-09  Score=114.04  Aligned_cols=61  Identities=20%  Similarity=0.296  Sum_probs=46.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeE---------------EEEEEEeCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVH---------------LKLDILDTSGE  120 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~---------------v~L~I~DT~G~  120 (592)
                      ...++|+|||.||||||||+|+|++... ..++..||.+.....+.+.+..               ..+.|+||||.
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL   95 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL   95 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence            4557999999999999999999987644 4677888876666666554322               24678999998

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.03  E-value=2.4e-09  Score=118.02  Aligned_cols=115  Identities=23%  Similarity=0.266  Sum_probs=72.9

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC--CCCC------------------------------CccCceeeeEEEEEeeCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSP------------------------------KYKRTIEEMHHEDFSMNG  107 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~------------------------------~~~~Tt~d~~~~~v~vdg  107 (592)
                      ...++|+++|..++|||||+.+|+..  ....                              .....+-+.....+..+ 
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~-   83 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP-   83 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC-
Confidence            55689999999999999999999842  1110                              00111112222223333 


Q ss_pred             eEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh
Q psy1524         108 VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS  187 (592)
Q Consensus       108 ~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~  187 (592)
                       ...++|+||||+                                                       ++|.......+.
T Consensus        84 -~~~i~lIDtPGh-------------------------------------------------------~~f~~~~~~g~~  107 (446)
T PTZ00141         84 -KYYFTIIDAPGH-------------------------------------------------------RDFIKNMITGTS  107 (446)
T ss_pred             -CeEEEEEECCCh-------------------------------------------------------HHHHHHHHHhhh
Confidence             456677999999                                                       666665666678


Q ss_pred             cCCcEEEEEeCCCcCC---H---HHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCc
Q psy1524         188 SADAFILVYAIDDPNS---F---EEIRLIRDHIFETKASTAVP-IVVVGNKSDLA  235 (592)
Q Consensus       188 ~AD~iIlVyDvsd~~S---f---e~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~  235 (592)
                      .+|++|+|+|+++..-   |   ......+..+..    -.+| +|+|.||+|..
T Consensus       108 ~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~  158 (446)
T PTZ00141        108 QADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDK  158 (446)
T ss_pred             hcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEccccc
Confidence            9999999999986421   1   122223333322    2555 77999999953

>PRK00007 elongation factor G; Reviewed

Probab=99.01  E-value=5.3e-09  Score=121.23  Aligned_cols=116  Identities=16%  Similarity=0.185  Sum_probs=76.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc--CCCC-----C------------CccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY--NTFS-----P------------KYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~--~~f~-----~------------~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      ....+|+|+|..|+|||||+++|+.  +...     .            ....++.+.....+..++  ..++|+||||+
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~   85 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGH   85 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCc
Confidence            3456999999999999999999973  2110     0            111222233334455555  45666999998


Q ss_pred             CCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC
Q psy1524         121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD  200 (592)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd  200 (592)
                                                                             ..|..-....+..+|++|+|+|++.
T Consensus        86 -------------------------------------------------------~~f~~ev~~al~~~D~~vlVvda~~  110 (693)
T PRK00007         86 -------------------------------------------------------VDFTIEVERSLRVLDGAVAVFDAVG  110 (693)
T ss_pred             -------------------------------------------------------HHHHHHHHHHHHHcCEEEEEEECCC
Confidence                                                                   3343334456788999999999887


Q ss_pred             cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         201 PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       201 ~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      ...-.... .+..+..    .++|+|++.||+|+...
T Consensus       111 g~~~qt~~-~~~~~~~----~~~p~iv~vNK~D~~~~  142 (693)
T PRK00007        111 GVEPQSET-VWRQADK----YKVPRIAFVNKMDRTGA  142 (693)
T ss_pred             CcchhhHH-HHHHHHH----cCCCEEEEEECCCCCCC
Confidence            65444332 3333333    36899999999999854

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.01  E-value=3.7e-09  Score=116.54  Aligned_cols=103  Identities=20%  Similarity=0.182  Sum_probs=62.9

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCC
Q psy1524         176 NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGL  255 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~  255 (592)
                      +.|.......+..+|++++|+|+++...-......+..+ +..  .-.++|+|.||+|+.+....               
T Consensus       128 ~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~l--gi~~iIVvlNKiDlv~~~~~---------------  189 (460)
T PTZ00327        128 DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIM--KLKHIIILQNKIDLVKEAQA---------------  189 (460)
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHc--CCCcEEEEEecccccCHHHH---------------
Confidence            666555555677899999999998642111112222222 221  23478999999999753110               


Q ss_pred             CCccccccCCCCCCCCChHHHHHHHhh--cCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         256 PDSVCAHQISGTPDQVPYDTTESVVQV--DWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       256 ~~~~~~~~~~~~~r~Vs~ee~~~la~~--~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                                    .-..++...+.+.  ....+++++||++|.|+++|++.|.+.+
T Consensus       190 --------------~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        190 --------------QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             --------------HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence                          0011222222221  2356899999999999999998887644

>PRK09866 hypothetical protein; Provisional

Probab=99.01  E-value=6.8e-09  Score=116.21  Aligned_cols=93  Identities=19%  Similarity=0.178  Sum_probs=61.2

Q ss_pred             HHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCcccc
Q psy1524         182 RALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCA  261 (592)
Q Consensus       182 ~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~  261 (592)
                      ....+..||+||+|+|+++..+..+. .....+...  ....|+++|.||+|+.+..                       
T Consensus       252 M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~--~K~~PVILVVNKIDl~dre-----------------------  305 (741)
T PRK09866        252 LNQQLARASAVLAVLDYTQLKSISDE-EVREAILAV--GQSVPLYVLVNKFDQQDRN-----------------------  305 (741)
T ss_pred             HHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhc--CCCCCEEEEEEcccCCCcc-----------------------
Confidence            33479999999999999886555442 233444432  1236999999999986431                       


Q ss_pred             ccCCCCCCCCChHHHHHHH-----hhc-CCCeEEEcccCCCccHHHHHHHHHH
Q psy1524         262 HQISGTPDQVPYDTTESVV-----QVD-WENGFVEASAKDNTNITQVFKELLV  308 (592)
Q Consensus       262 ~~~~~~~r~Vs~ee~~~la-----~~~-~~~~~~EvSAktg~gVeeLf~~Li~  308 (592)
                              .-..+....+.     +.. ....+|+|||++|.|++++++.+..
T Consensus       306 --------eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        306 --------SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             --------cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence                    00122333322     111 1346999999999999999988876

>KOG1532|consensus

Probab=99.00  E-value=5.3e-10  Score=112.80  Aligned_cols=115  Identities=17%  Similarity=0.137  Sum_probs=68.4

Q ss_pred             CcEEEEEeCC---CcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccccccccc--CCCCcccccCCCCCccccccC
Q psy1524         190 DAFILVYAID---DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDL--TGGPFQTYLSGLPDSVCAHQI  264 (592)
Q Consensus       190 D~iIlVyDvs---d~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~  264 (592)
                      -++++|+|..   ++.+|-.-..+..   .+....+.|+|+|.||+|+.+.....++  ..+.|+..+.+..        
T Consensus       149 tvv~YvvDt~rs~~p~tFMSNMlYAc---Silyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~--------  217 (366)
T KOG1532|consen  149 TVVVYVVDTPRSTSPTTFMSNMLYAC---SILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAE--------  217 (366)
T ss_pred             eEEEEEecCCcCCCchhHHHHHHHHH---HHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhc--------
Confidence            4677777753   3444432221111   1224568999999999999876433222  2234444443211        


Q ss_pred             CCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHHHHhcc
Q psy1524         265 SGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYN  315 (592)
Q Consensus       265 ~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~~~  315 (592)
                      +.....+.......+-........+-|||.+|+|.+++|..+-+.+.+...
T Consensus       218 ~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~  268 (366)
T KOG1532|consen  218 SSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEE  268 (366)
T ss_pred             cchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHH
Confidence            111222333344444455567789999999999999999999888766443

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.00  E-value=2.3e-09  Score=108.07  Aligned_cols=169  Identities=19%  Similarity=0.274  Sum_probs=95.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCC--cc-CceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPK--YK-RTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~--~~-~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ||+++|..++||||+.+-+..+..+.+  +. +|+ +.....+.. ...+.+++||.||+.....               
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~-~ve~~~v~~-~~~~~l~iwD~pGq~~~~~---------------   63 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTI-DVEKSHVRF-LSFLPLNIWDCPGQDDFME---------------   63 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG------SEEEEEEEC-TTSCEEEEEEE-SSCSTTH---------------
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcC-CceEEEEec-CCCcEEEEEEcCCcccccc---------------
Confidence            799999999999999998886644322  22 333 222232322 2335778899999921100               


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh-c
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK-A  219 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~-~  219 (592)
                                                         ..+.......+++++++|+|+|+.+.+-.+++..+...+.... .
T Consensus        64 -----------------------------------~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~  108 (232)
T PF04670_consen   64 -----------------------------------NYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY  108 (232)
T ss_dssp             -----------------------------------TTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------ccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh
Confidence                                               1122234556899999999999996666666655544443322 4


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh-hcC-CCeEEEcccCCCc
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ-VDW-ENGFVEASAKDNT  297 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~-~~~-~~~~~EvSAktg~  297 (592)
                      .+++.+-+...|+|+..++.+.+.                        .+.+. +.....+. ... .+.|+.||... +
T Consensus       109 sp~~~v~vfiHK~D~l~~~~r~~~------------------------~~~~~-~~i~~~~~~~~~~~~~~~~TSI~D-~  162 (232)
T PF04670_consen  109 SPNIKVFVFIHKMDLLSEDEREEI------------------------FRDIQ-QRIRDELEDLGIEDITFFLTSIWD-E  162 (232)
T ss_dssp             STT-EEEEEEE-CCCS-HHHHHHH------------------------HHHHH-HHHHHHHHHTT-TSEEEEEE-TTS-T
T ss_pred             CCCCeEEEEEeecccCCHHHHHHH------------------------HHHHH-HHHHHHhhhccccceEEEeccCcC-c
Confidence            688999999999999765321100                        00000 11111111 111 26788888887 5


Q ss_pred             cHHHHHHHHHHHH
Q psy1524         298 NITQVFKELLVQA  310 (592)
Q Consensus       298 gVeeLf~~Li~~i  310 (592)
                      .+-++|..+++.+
T Consensus       163 Sly~A~S~Ivq~L  175 (232)
T PF04670_consen  163 SLYEAWSKIVQKL  175 (232)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHH
Confidence            7888888888776

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=98.97  E-value=9e-09  Score=105.07  Aligned_cols=61  Identities=26%  Similarity=0.394  Sum_probs=44.2

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      .....++|+|+|.+|||||||+|++++....  ....+++..........++.  .+.||||||.
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~--~i~vIDTPGl   89 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGF--KLNIIDTPGL   89 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCCc
Confidence            4467799999999999999999999987543  33444444433334445664  4567999999

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.95  E-value=6.5e-09  Score=123.48  Aligned_cols=53  Identities=34%  Similarity=0.476  Sum_probs=40.3

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCCC---cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524         176 NEFPAMRALSISSADAFILVYAIDD---PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD  236 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvsd---~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~  236 (592)
                      +.|..++...+..+|++++|+|+++   +.+++.+.    .+..    .++|+|+|+||+|+..
T Consensus       537 e~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~----~~iPiIVViNKiDL~~  592 (1049)
T PRK14845        537 EAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ----YKTPFVVAANKIDLIP  592 (1049)
T ss_pred             HHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH----cCCCEEEEEECCCCcc
Confidence            7788888778888999999999987   34444433    2222    3689999999999974

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.94  E-value=4.6e-09  Score=122.16  Aligned_cols=117  Identities=16%  Similarity=0.165  Sum_probs=79.1

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC---------------CCCCC---ccCcee-eeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN---------------TFSPK---YKRTIE-EMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~---------------~f~~~---~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      ....+|+|+|..++|||||+++|+..               .+.+.   ...|+. ......+.+++..+.++||||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            35679999999999999999999842               11111   112332 122223345666788899999999


Q ss_pred             CCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC
Q psy1524         121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD  200 (592)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd  200 (592)
                                                                             ..|......+++.+|++|+|+|+.+
T Consensus        97 -------------------------------------------------------~~f~~~~~~al~~aD~~llVvda~~  121 (720)
T TIGR00490        97 -------------------------------------------------------VDFGGDVTRAMRAVDGAIVVVCAVE  121 (720)
T ss_pred             -------------------------------------------------------cccHHHHHHHHHhcCEEEEEEecCC
Confidence                                                                   5555566677899999999999987


Q ss_pred             cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524         201 PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD  236 (592)
Q Consensus       201 ~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~  236 (592)
                      ........ .+..+.    ..++|+|+|+||+|...
T Consensus       122 g~~~~t~~-~~~~~~----~~~~p~ivviNKiD~~~  152 (720)
T TIGR00490       122 GVMPQTET-VLRQAL----KENVKPVLFINKVDRLI  152 (720)
T ss_pred             CCCccHHH-HHHHHH----HcCCCEEEEEEChhccc
Confidence            54332222 222222    23678899999999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>cd00066 G-alpha G protein alpha subunit

Probab=98.94  E-value=1.5e-08  Score=107.00  Aligned_cols=123  Identities=20%  Similarity=0.232  Sum_probs=77.8

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCCCc----------CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCC
Q psy1524         176 NEFPAMRALSISSADAFILVYAIDDP----------NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG  245 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvsd~----------~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~  245 (592)
                      ...+..|..++.+++++|+|+|+++-          ..+.+....+..+.....-.++|++|++||+|+....    +..
T Consensus       172 ~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~k----i~~  247 (317)
T cd00066         172 RSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEK----IKK  247 (317)
T ss_pred             cccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHh----hcC
Confidence            66778888899999999999999874          3344444455555443333578999999999987651    111


Q ss_pred             CCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh---------cCCCeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524         246 GPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV---------DWENGFVEASAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       246 ~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~---------~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~  313 (592)
                      ..+...+.+..         +.  .-+.+.+..+...         ...+-...++|..-.+|..+|+.+.+.|...
T Consensus       248 ~~l~~~fp~y~---------g~--~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         248 SPLTDYFPDYT---------GP--PNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             CCccccCCCCC---------CC--CCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence            12222222111         10  1234444433321         1223356789999999999999999888654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK12740 elongation factor G; Reviewed

Probab=98.92  E-value=1.4e-08  Score=117.28  Aligned_cols=57  Identities=16%  Similarity=0.119  Sum_probs=41.7

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         176 NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      ..|......++..+|++|+|+|+++.........| ..+..    .++|+++|+||+|+...
T Consensus        71 ~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~----~~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         71 VDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK----YGVPRIIFVNKMDRAGA  127 (668)
T ss_pred             HHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH----cCCCEEEEEECCCCCCC
Confidence            45555666678899999999999987766544333 33332    36899999999998754

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.91  E-value=3.2e-08  Score=103.38  Aligned_cols=72  Identities=24%  Similarity=0.349  Sum_probs=46.9

Q ss_pred             HHhhhhccccCCCCCCCCCCCcceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeC
Q psy1524          40 RILNLVSASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDT  117 (592)
Q Consensus        40 ~~~~~~s~~~~~~~~~~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT  117 (592)
                      ++..++......       ....++|+|+|.+|||||||+|++++...  .+...+++..........++  ..++|+||
T Consensus        23 ~l~~~l~~l~~~-------~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDT   93 (313)
T TIGR00991        23 KLLELLGKLKEE-------DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDT   93 (313)
T ss_pred             HHHHHHHhcccc-------cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEEC
Confidence            455555554322       35679999999999999999999997753  22333322222222334466  45677999


Q ss_pred             CCC
Q psy1524         118 SGE  120 (592)
Q Consensus       118 ~G~  120 (592)
                      ||.
T Consensus        94 PGL   96 (313)
T TIGR00991        94 PGL   96 (313)
T ss_pred             CCC
Confidence            998

>PRK13768 GTPase; Provisional

Probab=98.90  E-value=6.6e-09  Score=106.26  Aligned_cols=113  Identities=11%  Similarity=0.118  Sum_probs=59.9

Q ss_pred             CCcEEEEEeCCCcCCHHHHHH--HHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCC---CCCcccccc
Q psy1524         189 ADAFILVYAIDDPNSFEEIRL--IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSG---LPDSVCAHQ  263 (592)
Q Consensus       189 AD~iIlVyDvsd~~Sfe~l~~--~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~  263 (592)
                      ++++++|+|++...+..++..  ++......  ..++|+|+|+||+|+.......     .....+..   +........
T Consensus       129 ~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v~nK~D~~~~~~~~-----~~~~~l~~~~~~~~~l~~~~  201 (253)
T PRK13768        129 KSVVVFLIDAVLAKTPSDFVSLLLLALSVQL--RLGLPQIPVLNKADLLSEEELE-----RILKWLEDPEYLLEELKLEK  201 (253)
T ss_pred             CeEEEEEechHHhCCHHHHHHHHHHHHHHHH--HcCCCEEEEEEhHhhcCchhHH-----HHHHHHhCHHHHHHHHhccc
Confidence            899999999977655444332  22222211  2478999999999998652110     00011100   000000000


Q ss_pred             CCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         264 ISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       264 ~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      .  .......+-+..+.+......++++||+++.|++++++.+.+.+
T Consensus       202 ~--~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        202 G--LQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             c--hHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            0  00001111112222222345789999999999999999997765

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.89  E-value=6.3e-09  Score=93.89  Aligned_cols=141  Identities=21%  Similarity=0.267  Sum_probs=93.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV  143 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~  143 (592)
                      ||++||..|+|||||++.|.+...-......        ++++..-    .+||||.-                      
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQA--------ve~~d~~----~IDTPGEy----------------------   48 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQA--------VEFNDKG----DIDTPGEY----------------------   48 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhhcccce--------eeccCcc----ccCCchhh----------------------
Confidence            7999999999999999999977553222222        2222211    28999970                      


Q ss_pred             HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524         144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV  223 (592)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~  223 (592)
                       +++.                           --|.++. ....++|++++|-.+++++|.-.-.     +.   .....
T Consensus        49 -~~~~---------------------------~~Y~aL~-tt~~dadvi~~v~~and~~s~f~p~-----f~---~~~~k   91 (148)
T COG4917          49 -FEHP---------------------------RWYHALI-TTLQDADVIIYVHAANDPESRFPPG-----FL---DIGVK   91 (148)
T ss_pred             -hhhh---------------------------HHHHHHH-HHhhccceeeeeecccCccccCCcc-----cc---ccccc
Confidence             0000                           1122222 2356799999999999987632111     11   12345


Q ss_pred             CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHH
Q psy1524         224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF  303 (592)
Q Consensus       224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf  303 (592)
                      |+|-|.+|.||.++.                                 ..+....+.......++|++|+.++.||++++
T Consensus        92 ~vIgvVTK~DLaed~---------------------------------dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~  138 (148)
T COG4917          92 KVIGVVTKADLAEDA---------------------------------DISLVKRWLREAGAEPIFETSAVDNQGVEELV  138 (148)
T ss_pred             ceEEEEecccccchH---------------------------------hHHHHHHHHHHcCCcceEEEeccCcccHHHHH
Confidence            799999999999641                                 22445566665667789999999999999999


Q ss_pred             HHHHH
Q psy1524         304 KELLV  308 (592)
Q Consensus       304 ~~Li~  308 (592)
                      +.+..
T Consensus       139 ~~L~~  143 (148)
T COG4917         139 DYLAS  143 (148)
T ss_pred             HHHHh
Confidence            88764

>KOG0705|consensus

Probab=98.88  E-value=5.1e-09  Score=113.68  Aligned_cols=166  Identities=19%  Similarity=0.342  Sum_probs=133.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+|+.|||..++|||+|+.||+.+.|.....+ .+..+.+.+.+++....+.+-|.+|.                   
T Consensus        28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~-e~~~~kkE~vv~gqs~lLlirdeg~~-------------------   87 (749)
T KOG0705|consen   28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESP-EGGRFKKEVVVDGQSHLLLIRDEGGH-------------------   87 (749)
T ss_pred             cchhheeeeecccCCceeeeeeeccceeccccCC-cCccceeeEEeeccceEeeeecccCC-------------------
Confidence            3458999999999999999999999999865444 33456677788888888888888886                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                               ....|...+|++||||.+.|..+|+.+..+...+..+..
T Consensus        88 -----------------------------------------~~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~  126 (749)
T KOG0705|consen   88 -----------------------------------------PDAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRN  126 (749)
T ss_pred             -----------------------------------------chhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccc
Confidence                                                     112356789999999999999999999998888877666


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ...+|+++|+++.=...+                             ..+.+....+..++.....+.+|+++|.+|.|+
T Consensus       127 r~~i~l~lvgtqd~iS~~-----------------------------~~rv~~da~~r~l~~~~krcsy~et~atyGlnv  177 (749)
T KOG0705|consen  127 ISDLPLILVGTQDHISAK-----------------------------RPRVITDDRARQLSAQMKRCSYYETCATYGLNV  177 (749)
T ss_pred             cccchHHhhcCcchhhcc-----------------------------cccccchHHHHHHHHhcCccceeecchhhhhhH
Confidence            678899999987433222                             226667777787777778888999999999999


Q ss_pred             HHHHHHHHHHHHHhcc
Q psy1524         300 TQVFKELLVQAKVKYN  315 (592)
Q Consensus       300 eeLf~~Li~~i~~~~~  315 (592)
                      +..|..++..+.....
T Consensus       178 ~rvf~~~~~k~i~~~~  193 (749)
T KOG0705|consen  178 ERVFQEVAQKIVQLRK  193 (749)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999998876543

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.84  E-value=6.8e-08  Score=103.24  Aligned_cols=58  Identities=19%  Similarity=0.260  Sum_probs=45.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeE---------------EEEEEEeCCCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVH---------------LKLDILDTSGE  120 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~---------------v~L~I~DT~G~  120 (592)
                      ++|+|||.||||||||+|+|++... ..+|..||.+.....+.+.+..               ..++|+|+||.
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL   76 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGL   76 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCC
Confidence            6999999999999999999997653 3677777776665666554421               24788999998

>TIGR00101 ureG urease accessory protein UreG

Probab=98.83  E-value=1.8e-08  Score=99.51  Aligned_cols=81  Identities=20%  Similarity=0.129  Sum_probs=53.2

Q ss_pred             CCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCE--EEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCC
Q psy1524         189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI--VVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISG  266 (592)
Q Consensus       189 AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PI--ILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  266 (592)
                      +|.+|.|+|+++..+...  ...         ..+.+  ++|+||+|+.+.                             
T Consensus       113 ~~~~i~vvD~~~~~~~~~--~~~---------~qi~~ad~~~~~k~d~~~~-----------------------------  152 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKIPR--KGG---------PGITRSDLLVINKIDLAPM-----------------------------  152 (199)
T ss_pred             hCcEEEEEEcchhhhhhh--hhH---------hHhhhccEEEEEhhhcccc-----------------------------
Confidence            688999999987655221  111         12333  899999999742                             


Q ss_pred             CCCCCChHHHHHHHhh-cCCCeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524         267 TPDQVPYDTTESVVQV-DWENGFVEASAKDNTNITQVFKELLVQAK  311 (592)
Q Consensus       267 ~~r~Vs~ee~~~la~~-~~~~~~~EvSAktg~gVeeLf~~Li~~i~  311 (592)
                        ..-..+.....++. ....++++|||++|+||+++|+++.+.++
T Consensus       153 --~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       153 --VGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             --ccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence              00112222222222 44678999999999999999999987653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG1707|consensus

Probab=98.76  E-value=7e-08  Score=106.14  Aligned_cols=163  Identities=20%  Similarity=0.287  Sum_probs=111.9

Q ss_pred             CCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524          57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP  135 (592)
Q Consensus        57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~  135 (592)
                      +.....+++.++|+.++|||.|++.|.++.+...+..++. .+....+.+.+..-.+.+.|..-. ..+.+         
T Consensus       420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l---------  489 (625)
T KOG1707|consen  420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFL---------  489 (625)
T ss_pred             cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccc---------
Confidence            3445679999999999999999999999988876666665 344445555566666666665432 00000         


Q ss_pred             CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524         136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF  215 (592)
Q Consensus       136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~  215 (592)
                                                             ++.        -..||++.++||++++.||+.+...+....
T Consensus       490 ---------------------------------------~~k--------e~~cDv~~~~YDsS~p~sf~~~a~v~~~~~  522 (625)
T KOG1707|consen  490 ---------------------------------------TSK--------EAACDVACLVYDSSNPRSFEYLAEVYNKYF  522 (625)
T ss_pred             ---------------------------------------cCc--------cceeeeEEEecccCCchHHHHHHHHHHHhh
Confidence                                                   010        145899999999999999999888766544


Q ss_pred             HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524         216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD  295 (592)
Q Consensus       216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt  295 (592)
                      .   ..+.|+++|++|+|+.+..+.                            -.+.+   .++++...-.+-+.+|.++
T Consensus       523 ~---~~~~Pc~~va~K~dlDe~~Q~----------------------------~~iqp---de~~~~~~i~~P~~~S~~~  568 (625)
T KOG1707|consen  523 D---LYKIPCLMVATKADLDEVPQR----------------------------YSIQP---DEFCRQLGLPPPIHISSKT  568 (625)
T ss_pred             h---ccCCceEEEeeccccchhhhc----------------------------cCCCh---HHHHHhcCCCCCeeeccCC
Confidence            3   268999999999999875211                            11222   4455544444456678875


Q ss_pred             CccHHHHHHHHHHHHH
Q psy1524         296 NTNITQVFKELLVQAK  311 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~  311 (592)
                      ... .++|..|+..+.
T Consensus       569 ~~s-~~lf~kL~~~A~  583 (625)
T KOG1707|consen  569 LSS-NELFIKLATMAQ  583 (625)
T ss_pred             CCC-chHHHHHHHhhh
Confidence            333 899999988873

>KOG1486|consensus

Probab=98.76  E-value=2.1e-07  Score=93.21  Aligned_cols=62  Identities=26%  Similarity=0.392  Sum_probs=50.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCC-CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNT-FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSG  123 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~-f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~  123 (592)
                      .-.-+|+++|.|.||||||+..++... -...|..|+.......+.+++..+.+  .|.||.-++
T Consensus        60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQl--lDLPGIieG  122 (364)
T KOG1486|consen   60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQL--LDLPGIIEG  122 (364)
T ss_pred             cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEE--ecCcccccc
Confidence            345799999999999999999998543 34678889988888888999976654  999998443

>smart00275 G_alpha G protein alpha subunit

Probab=98.75  E-value=9.9e-08  Score=101.81  Aligned_cols=122  Identities=17%  Similarity=0.193  Sum_probs=78.6

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCCCc----------CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCC
Q psy1524         176 NEFPAMRALSISSADAFILVYAIDDP----------NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG  245 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvsd~----------~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~  245 (592)
                      ...+..|..++.+++++|+|+|+++-          ..+.+....+..+.....-.++|++|++||.|+....    +..
T Consensus       195 r~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~K----l~~  270 (342)
T smart00275      195 RSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEK----IKK  270 (342)
T ss_pred             hhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHH----hCC
Confidence            67788899999999999999999973          3455555555555554334678999999999998651    112


Q ss_pred             CCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh-----c-----CCCeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524         246 GPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV-----D-----WENGFVEASAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       246 ~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~-----~-----~~~~~~EvSAktg~gVeeLf~~Li~~i~~~  313 (592)
                      ..+..++.+...            ..+.+.+..+...     .     ..+-+..++|..-.++..+|+.+...+...
T Consensus       271 ~~l~~~fp~y~g------------~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~  336 (342)
T smart00275      271 VPLVDYFPDYKG------------PNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR  336 (342)
T ss_pred             CchhccCCCCCC------------CCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence            222222222211            1233444433221     1     123356788999999999999988887654

Subunit of G proteins that contains the guanine nucleotide binding site

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.73  E-value=1.9e-07  Score=100.16  Aligned_cols=142  Identities=14%  Similarity=0.148  Sum_probs=78.4

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcC----C-------------CCCCccC---ceeeeEE---EEEee---CCeEEEEEE
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYN----T-------------FSPKYKR---TIEEMHH---EDFSM---NGVHLKLDI  114 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~----~-------------f~~~~~~---Tt~d~~~---~~v~v---dg~~v~L~I  114 (592)
                      -.+-|.|+|+.++|||||+|+|++.    .             .++....   ||.+...   +-+.+   ++....+.+
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            4689999999999999999999976    2             2222233   3333332   22332   566677888


Q ss_pred             EeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhc--cccccCcchhHHHHHhhh-cCCc
Q psy1524         115 LDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSL--AMTCSTNEFPAMRALSIS-SADA  191 (592)
Q Consensus       115 ~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~l~~~~~~-~AD~  191 (592)
                      +||+|......++.   ..             ...        ..+=..+++...  +..|..    --....+. .+|+
T Consensus        96 IDcvG~~v~GalG~---~r-------------~~k--------~RmV~TPW~d~~IPF~~AAe----iGT~kVI~dhstI  147 (492)
T TIGR02836        96 VDCVGYTVKGALGY---ME-------------EDK--------PRMVSTPWYDYEIPFEEAAE----IGTRKVIQEHSTI  147 (492)
T ss_pred             EECCCcccCCCccc---ee-------------ccc--------cccccCCcccccCchhhhhh----hhHHHHHHhcCcE
Confidence            99999843222110   00             000        000011111100  000100    01122345 7999


Q ss_pred             EEEEE-eCC--C--cCCHH-HHHHHHHHHHHhhcCCCCCEEEEEeCCCC
Q psy1524         192 FILVY-AID--D--PNSFE-EIRLIRDHIFETKASTAVPIVVVGNKSDL  234 (592)
Q Consensus       192 iIlVy-Dvs--d--~~Sfe-~l~~~l~~L~~~~~~~~~PIILVgNK~DL  234 (592)
                      .|+|. |.+  +  ++.+. .-..++.+|++.    ++|+|+|.||+|-
T Consensus       148 givVtTDgsi~dI~Re~y~~aEe~~i~eLk~~----~kPfiivlN~~dp  192 (492)
T TIGR02836       148 GVVVTTDGTITDIPREDYVEAEERVIEELKEL----NKPFIILLNSTHP  192 (492)
T ss_pred             EEEEEcCCCccccccccchHHHHHHHHHHHhc----CCCEEEEEECcCC
Confidence            99998 653  1  22333 334577777665    7999999999993

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.73  E-value=7.3e-08  Score=102.13  Aligned_cols=91  Identities=18%  Similarity=0.267  Sum_probs=55.0

Q ss_pred             hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524         186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS  265 (592)
Q Consensus       186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  265 (592)
                      ...||.+++|.+....   ++++.....+.+.      .-|+|.||+|+......                         
T Consensus       167 ~~~aD~vlvv~~p~~g---d~iq~~k~gi~E~------aDIiVVNKaDl~~~~~a-------------------------  212 (332)
T PRK09435        167 AGMVDFFLLLQLPGAG---DELQGIKKGIMEL------ADLIVINKADGDNKTAA-------------------------  212 (332)
T ss_pred             HHhCCEEEEEecCCch---HHHHHHHhhhhhh------hheEEeehhcccchhHH-------------------------
Confidence            4569999999763333   3443322222222      23899999998764100                         


Q ss_pred             CCCCCCChHHHHHHHhh------cCCCeEEEcccCCCccHHHHHHHHHHHHHHhc
Q psy1524         266 GTPDQVPYDTTESVVQV------DWENGFVEASAKDNTNITQVFKELLVQAKVKY  314 (592)
Q Consensus       266 ~~~r~Vs~ee~~~la~~------~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~~  314 (592)
                          .-...+.......      .|..+++.+||+++.||+++++.+.+.+...+
T Consensus       213 ----~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~  263 (332)
T PRK09435        213 ----RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALT  263 (332)
T ss_pred             ----HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence                0001111111111      24467999999999999999999999875433

>cd01882 BMS1 Bms1

Probab=98.71  E-value=2.4e-07  Score=93.12  Aligned_cols=111  Identities=18%  Similarity=0.167  Sum_probs=66.1

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      .....|+|+|.+|+|||||++.++...-........+. + ..+..++  ..+.++||||.                   
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i-~i~~~~~--~~i~~vDtPg~-------------------   93 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I-TVVTGKK--RRLTFIECPND-------------------   93 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E-EEEecCC--ceEEEEeCCch-------------------
Confidence            34578999999999999999999854211111111111 1 1111233  34566999987                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          .  ..+.. ..+.+|++++|+|++....... ..++..+..   
T Consensus        94 ------------------------------------~--~~~l~-~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~---  130 (225)
T cd01882          94 ------------------------------------I--NAMID-IAKVADLVLLLIDASFGFEMET-FEFLNILQV---  130 (225)
T ss_pred             ------------------------------------H--HHHHH-HHHhcCEEEEEEecCcCCCHHH-HHHHHHHHH---
Confidence                                                1  11111 2577999999999986554332 223333333   


Q ss_pred             CCCCC-EEEEEeCCCCccc
Q psy1524         220 STAVP-IVVVGNKSDLADE  237 (592)
Q Consensus       220 ~~~~P-IILVgNK~DL~~~  237 (592)
                       .+.| +|+|.||+|+..+
T Consensus       131 -~g~p~vi~VvnK~D~~~~  148 (225)
T cd01882         131 -HGFPRVMGVLTHLDLFKK  148 (225)
T ss_pred             -cCCCeEEEEEeccccCCc
Confidence             2467 4559999998743

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.67  E-value=3.5e-07  Score=90.99  Aligned_cols=179  Identities=16%  Similarity=0.234  Sum_probs=93.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCc---cCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKY---KRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~---~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ++|+|+|.+|+||||++|.+++.......   .+.+.........+++..+.+  +||||..+.....            
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~V--IDTPGl~d~~~~~------------   66 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTV--IDTPGLFDSDGSD------------   66 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEE--EE--SSEETTEEH------------
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEE--EeCCCCCCCcccH------------
Confidence            58999999999999999999977543221   222334444455788876654  9999982211100            


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                        . .+.                             ............+.+++|+|+.++ +-+-.+. ..+..+.+..+
T Consensus        67 --~-~~~-----------------------------~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~-~~l~~l~~~FG  112 (212)
T PF04548_consen   67 --E-EII-----------------------------REIKRCLSLCSPGPHAFLLVIPLG-RFTEEDR-EVLELLQEIFG  112 (212)
T ss_dssp             --H-HHH-----------------------------HHHHHHHHHTTT-ESEEEEEEETT-B-SHHHH-HHHHHHHHHHC
T ss_pred             --H-HHH-----------------------------HHHHHHHHhccCCCeEEEEEEecC-cchHHHH-HHHHHHHHHcc
Confidence              0 000                             011111122345789999999988 4343222 23344444422


Q ss_pred             C-CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC----
Q psy1524         220 S-TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK----  294 (592)
Q Consensus       220 ~-~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk----  294 (592)
                      . --.-+|||.|..|......        +..++.                .-.......+.+ ..+..|..++.+    
T Consensus       113 ~~~~k~~ivvfT~~d~~~~~~--------~~~~l~----------------~~~~~~l~~li~-~c~~R~~~f~n~~~~~  167 (212)
T PF04548_consen  113 EEIWKHTIVVFTHADELEDDS--------LEDYLK----------------KESNEALQELIE-KCGGRYHVFNNKTKDK  167 (212)
T ss_dssp             GGGGGGEEEEEEEGGGGTTTT--------HHHHHH----------------HHHHHHHHHHHH-HTTTCEEECCTTHHHH
T ss_pred             HHHHhHhhHHhhhcccccccc--------HHHHHh----------------ccCchhHhHHhh-hcCCEEEEEeccccch
Confidence            1 1236889999888665410        000000                000111233333 234457766666    


Q ss_pred             --CCccHHHHHHHHHHHHHHhc
Q psy1524         295 --DNTNITQVFKELLVQAKVKY  314 (592)
Q Consensus       295 --tg~gVeeLf~~Li~~i~~~~  314 (592)
                        ....+.+||+.+-+.+....
T Consensus       168 ~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  168 EKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHcC
Confidence              33568888888888776654

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.65  E-value=5e-07  Score=105.57  Aligned_cols=117  Identities=16%  Similarity=0.182  Sum_probs=75.3

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC--CCCCCccC----------------cee-eeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPKYKR----------------TIE-EMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~~~~----------------Tt~-d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      ...-+|+|+|..++|||||+.+|+..  ........                |+. ....-.+..++..+.++|+||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            34568999999999999999999842  11110000                010 001111223445677888999999


Q ss_pred             CCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC
Q psy1524         121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD  200 (592)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd  200 (592)
                                                                             ..|.......+..+|++|+|+|+..
T Consensus        98 -------------------------------------------------------~df~~~~~~~l~~~D~avlVvda~~  122 (731)
T PRK07560         98 -------------------------------------------------------VDFGGDVTRAMRAVDGAIVVVDAVE  122 (731)
T ss_pred             -------------------------------------------------------cChHHHHHHHHHhcCEEEEEEECCC
Confidence                                                                   5565566667889999999999887


Q ss_pred             cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524         201 PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD  236 (592)
Q Consensus       201 ~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~  236 (592)
                      ...... ...+..+.+    .+.|+|++.||+|+..
T Consensus       123 g~~~~t-~~~~~~~~~----~~~~~iv~iNK~D~~~  153 (731)
T PRK07560        123 GVMPQT-ETVLRQALR----ERVKPVLFINKVDRLI  153 (731)
T ss_pred             CCCccH-HHHHHHHHH----cCCCeEEEEECchhhc
Confidence            643322 223333322    2468899999999864

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=1.5e-07  Score=100.47  Aligned_cols=25  Identities=32%  Similarity=0.646  Sum_probs=22.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...++++++|...+|||||+-||+.
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly   29 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLY   29 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHH
Confidence            5679999999999999999999984

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.64  E-value=2.7e-07  Score=96.66  Aligned_cols=89  Identities=17%  Similarity=0.281  Sum_probs=54.6

Q ss_pred             hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524         186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS  265 (592)
Q Consensus       186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  265 (592)
                      ...+|.++++-+   +.+-+++..+...+      .++|.++|+||+|+......                         
T Consensus       145 ~~~aD~i~vv~~---~~~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~-------------------------  190 (300)
T TIGR00750       145 ANMADTFVVVTI---PGTGDDLQGIKAGL------MEIADIYVVNKADGEGATNV-------------------------  190 (300)
T ss_pred             HHhhceEEEEec---CCccHHHHHHHHHH------hhhccEEEEEcccccchhHH-------------------------
Confidence            556788888743   34445555544433      24678999999999754100                         


Q ss_pred             CCCCCCChH---HHHHHHhh--cCCCeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524         266 GTPDQVPYD---TTESVVQV--DWENGFVEASAKDNTNITQVFKELLVQAK  311 (592)
Q Consensus       266 ~~~r~Vs~e---e~~~la~~--~~~~~~~EvSAktg~gVeeLf~~Li~~i~  311 (592)
                         ..+...   ....+...  .+..++++|||++|.||+++++++.+...
T Consensus       191 ---~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       191 ---TIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             ---HHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence               000000   00111111  23346899999999999999999998754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.61  E-value=3e-07  Score=86.86  Aligned_cols=52  Identities=15%  Similarity=0.220  Sum_probs=36.3

Q ss_pred             chhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCC
Q psy1524         177 EFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKS  232 (592)
Q Consensus       177 ~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~  232 (592)
                      ....+...++..+|++|+|.+++...+-.+...+.+.+..    ....+|+|.||+
T Consensus       117 ~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~----~~~~~i~V~nk~  168 (168)
T PF00350_consen  117 EHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP----DKSRTIFVLNKA  168 (168)
T ss_dssp             TTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT----TCSSEEEEEE-G
T ss_pred             hhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC----CCCeEEEEEcCC
Confidence            3346777888999999999999886655555554444433    344599999995

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.61  E-value=2.1e-08  Score=101.74  Aligned_cols=106  Identities=12%  Similarity=0.076  Sum_probs=46.4

Q ss_pred             cCCcEEEEEeCCCcCCHHHH-HHHHHHHHHhhcCCCCCEEEEEeCCCCcccccc--cccC--CCCcccccCCCCCccccc
Q psy1524         188 SADAFILVYAIDDPNSFEEI-RLIRDHIFETKASTAVPIVVVGNKSDLADENRQ--VDLT--GGPFQTYLSGLPDSVCAH  262 (592)
Q Consensus       188 ~AD~iIlVyDvsd~~Sfe~l-~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~--~~~~--~~~~~~~l~~~~~~~~~~  262 (592)
                      ..-++|+++|+..-.+-... ..++..+.-. ...+.|.|.|.||+|+..+...  .+..  .+.+...+.         
T Consensus       122 ~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~---------  191 (238)
T PF03029_consen  122 GRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLE---------  191 (238)
T ss_dssp             ---EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHH---------
T ss_pred             cceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHH---------
Confidence            45688999997654442222 2222222111 1247899999999999873100  0000  000000000         


Q ss_pred             cCCCCCCCCChHHHHHHHhh---cCCC-eEEEcccCCCccHHHHHHHHHHHH
Q psy1524         263 QISGTPDQVPYDTTESVVQV---DWEN-GFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       263 ~~~~~~r~Vs~ee~~~la~~---~~~~-~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                        ..     .......++..   .... .++.+|+++++++++++..+-+.+
T Consensus       192 --~~-----~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  192 --SD-----YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             --T------HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             --HH-----HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence              00     01111122221   2333 799999999999999998876654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.59  E-value=7.2e-08  Score=95.40  Aligned_cols=83  Identities=13%  Similarity=0.117  Sum_probs=52.0

Q ss_pred             cCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCC
Q psy1524         188 SADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGT  267 (592)
Q Consensus       188 ~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  267 (592)
                      ..+..+.|+|+++.....  ... ..+      ...|.++|+||+|+...                              
T Consensus       123 ~~~~~i~Vvd~~~~d~~~--~~~-~~~------~~~a~iiv~NK~Dl~~~------------------------------  163 (207)
T TIGR00073       123 GEHMRVVLLSVTEGDDKP--LKY-PGM------FKEADLIVINKADLAEA------------------------------  163 (207)
T ss_pred             ccCeEEEEEecCcccchh--hhh-HhH------HhhCCEEEEEHHHcccc------------------------------
Confidence            356667889987654311  111 111      24578999999999753                              


Q ss_pred             CCCCChHHHHHHHh-hcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         268 PDQVPYDTTESVVQ-VDWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       268 ~r~Vs~ee~~~la~-~~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                       .....++.....+ .....+++++||++|.||+++|+++.+..
T Consensus       164 -~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       164 -VGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             -chhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence             1111122222222 22357799999999999999999998753

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.56  E-value=3e-07  Score=108.84  Aligned_cols=55  Identities=13%  Similarity=0.136  Sum_probs=40.1

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524         176 NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA  235 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~  235 (592)
                      ..|.......++.+|++|+|+|+.+.-...... .+..+.    ..++|+|++.||+|+.
T Consensus       109 ~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~~~~~----~~~~p~i~~iNK~D~~  163 (843)
T PLN00116        109 VDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL----GERIRPVLTVNKMDRC  163 (843)
T ss_pred             HHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH-HHHHHH----HCCCCEEEEEECCccc
Confidence            667666677789999999999998765433322 233332    3478999999999998

>PTZ00416 elongation factor 2; Provisional

Probab=98.56  E-value=3.5e-07  Score=108.12  Aligned_cols=116  Identities=15%  Similarity=0.216  Sum_probs=74.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC--CCCCCccCcee---------------eeEEEEEeeC--------CeEEEEEE
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPKYKRTIE---------------EMHHEDFSMN--------GVHLKLDI  114 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~~~~Tt~---------------d~~~~~v~vd--------g~~v~L~I  114 (592)
                      +...+|+|+|..++|||||+++|+..  ........++.               +.....+..+        +..+.++|
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            34459999999999999999999852  11111111100               0000111222        22567888


Q ss_pred             EeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEE
Q psy1524         115 LDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFIL  194 (592)
Q Consensus       115 ~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIl  194 (592)
                      +||||+                                                       .+|..-....++.+|++|+
T Consensus        97 iDtPG~-------------------------------------------------------~~f~~~~~~al~~~D~ail  121 (836)
T PTZ00416         97 IDSPGH-------------------------------------------------------VDFSSEVTAALRVTDGALV  121 (836)
T ss_pred             EcCCCH-------------------------------------------------------HhHHHHHHHHHhcCCeEEE
Confidence            999999                                                       4455555666889999999


Q ss_pred             EEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524         195 VYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA  235 (592)
Q Consensus       195 VyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~  235 (592)
                      |+|+++.-.... ...+..+.+    .++|+|++.||+|+.
T Consensus       122 Vvda~~g~~~~t-~~~~~~~~~----~~~p~iv~iNK~D~~  157 (836)
T PTZ00416        122 VVDCVEGVCVQT-ETVLRQALQ----ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEECCCCcCccH-HHHHHHHHH----cCCCEEEEEEChhhh
Confidence            999987644332 233333333    368999999999997

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.55  E-value=1e-06  Score=99.36  Aligned_cols=132  Identities=17%  Similarity=0.191  Sum_probs=76.9

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCC-CC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNT-FS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~-f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      -+..++|+|+|.+|||||||+|.+++.. +. ....+.+.........+++..  +.|+||||..+....          
T Consensus       115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~--L~VIDTPGL~dt~~d----------  182 (763)
T TIGR00993       115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVK--IRVIDTPGLKSSASD----------  182 (763)
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCce--EEEEECCCCCccccc----------
Confidence            4566899999999999999999999875 33 222233332322333456644  556999999321100          


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh--cCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS--SADAFILVYAIDDPNSFEEIRLIRDHI  214 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~--~AD~iIlVyDvsd~~Sfe~l~~~l~~L  214 (592)
                           ..                              ..+........++.  ..|++|+|..++.......-..++..|
T Consensus       183 -----q~------------------------------~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~I  227 (763)
T TIGR00993       183 -----QS------------------------------KNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTI  227 (763)
T ss_pred             -----hH------------------------------HHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHH
Confidence                 00                              00111111222333  589999999886443322223455656


Q ss_pred             HHhhcCC-CCCEEEEEeCCCCccc
Q psy1524         215 FETKAST-AVPIVVVGNKSDLADE  237 (592)
Q Consensus       215 ~~~~~~~-~~PIILVgNK~DL~~~  237 (592)
                      .+..+.. -.-+|||.|..|....
T Consensus       228 q~lFG~~Iwk~tIVVFThgD~lpp  251 (763)
T TIGR00993       228 TDVLGPSIWFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHHhCHHhHcCEEEEEeCCccCCC
Confidence            5553211 2368999999998864

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=2.1e-06  Score=91.03  Aligned_cols=62  Identities=19%  Similarity=0.235  Sum_probs=46.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEee------------C----CeEEEEEEEeCCCCCCC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSM------------N----GVHLKLDILDTSGEQSG  123 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~v------------d----g~~v~L~I~DT~G~~~~  123 (592)
                      .++|.|||.||||||||+|.++..... .+|+.+|-+.-...+.+            .    -....++|+|.+|...+
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G   80 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG   80 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence            479999999999999999999977643 68888776554444433            1    12456888999998543

>cd01900 YchF YchF subfamily

Probab=98.51  E-value=5.6e-07  Score=93.10  Aligned_cols=56  Identities=18%  Similarity=0.274  Sum_probs=43.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeE---------------EEEEEEeCCCC
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVH---------------LKLDILDTSGE  120 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~---------------v~L~I~DT~G~  120 (592)
                      |+|||.+|||||||+|+|++... +.+|..||.+.....+.+.+..               ..++|+|+||.
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl   72 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGL   72 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCc
Confidence            57999999999999999997754 4677777776666666664432               24788999998

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>cd01855 YqeH YqeH

Probab=98.49  E-value=4.4e-07  Score=88.26  Aligned_cols=94  Identities=15%  Similarity=0.087  Sum_probs=64.1

Q ss_pred             hhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCC
Q psy1524         178 FPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPD  257 (592)
Q Consensus       178 ~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~  257 (592)
                      |..+...+++++|++|+|+|+++...-     |...+...  ..+.|+|+|+||+|+....                   
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~-------------------   77 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKD-------------------   77 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCC-------------------
Confidence            577888899999999999999886421     12222221  2468999999999986431                   


Q ss_pred             ccccccCCCCCCCCChHHHHHHH-----hhc--CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         258 SVCAHQISGTPDQVPYDTTESVV-----QVD--WENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       258 ~~~~~~~~~~~r~Vs~ee~~~la-----~~~--~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                                   ...+....+.     +..  ....++++||++|.|++++++.+.+.+
T Consensus        78 -------------~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          78 -------------KNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             -------------CCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence                         1112222222     111  112589999999999999999998876

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG1487|consensus

Probab=98.47  E-value=4.7e-07  Score=91.10  Aligned_cols=197  Identities=17%  Similarity=0.140  Sum_probs=121.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCC-CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCC--CcccccccccCCCCc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNT-FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSG--KGLKCGAVLWGPKKW  138 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~-f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~--~~~~~~~~~~~~~~~  138 (592)
                      .-+|-++|-|.||||||+..+++-. -+..|..|+.......+.+++.+  +++.|.||.-++  ++...+.+++...+.
T Consensus        59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaK--iqlldlpgiiegakdgkgrg~qviavart  136 (358)
T KOG1487|consen   59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAK--IQLLDLPGIIEGAKDGKGRGKQVIAVART  136 (358)
T ss_pred             ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccc--eeeecCcchhcccccCCCCccEEEEEeec
Confidence            3489999999999999999999553 34678888876666666677754  556999998654  444445555544433


Q ss_pred             C----------------------chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEE
Q psy1524         139 G----------------------LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVY  196 (592)
Q Consensus       139 ~----------------------~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVy  196 (592)
                      +                      +|.++++-......+....+-.-.-.+..  ..-..+..+++...|-.....+.+=|
T Consensus       137 cnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~--~~LdlD~~rsil~eyR~hsAdi~Lr~  214 (358)
T KOG1487|consen  137 CNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTG--THLDLDLQRSILSEYRIHSADIALRF  214 (358)
T ss_pred             ccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeec--chhhHHHHHHHHHHhhhcchheeeec
Confidence            3                      67777776666555554433332222222  00011222333333333344455668


Q ss_pred             eCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHH
Q psy1524         197 AIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTT  276 (592)
Q Consensus       197 Dvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~  276 (592)
                      |+|-.+       ++..+...  ...+|.+.+.||+|-..-                                    |+.
T Consensus       215 DaT~Dd-------LIdvVegn--r~yVp~iyvLNkIdsISi------------------------------------EEL  249 (358)
T KOG1487|consen  215 DATADD-------LIDVVEGN--RIYVPCIYVLNKIDSISI------------------------------------EEL  249 (358)
T ss_pred             Ccchhh-------hhhhhccC--ceeeeeeeeecccceeee------------------------------------ecc
Confidence            877432       33333221  236899999999996532                                    222


Q ss_pred             HHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         277 ESVVQVDWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       277 ~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      .-+   ......+.+||-++.|++++++-+.+.+
T Consensus       250 dii---~~iphavpISA~~~wn~d~lL~~mweyL  280 (358)
T KOG1487|consen  250 DII---YTIPHAVPISAHTGWNFDKLLEKMWEYL  280 (358)
T ss_pred             cee---eeccceeecccccccchHHHHHHHhhcc
Confidence            211   2233478999999999999999888776

>smart00053 DYNc Dynamin, GTPase

Probab=98.45  E-value=2.1e-06  Score=87.17  Aligned_cols=57  Identities=18%  Similarity=0.095  Sum_probs=37.3

Q ss_pred             chhHHHHHhhh-cCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         177 EFPAMRALSIS-SADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       177 ~~~~l~~~~~~-~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      ....+...|++ ..+++++|+|++..-+-.+...+...+    .....++|+|+||+|..+.
T Consensus       150 ~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l----d~~~~rti~ViTK~D~~~~  207 (240)
T smart00053      150 QIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV----DPQGERTIGVITKLDLMDE  207 (240)
T ss_pred             HHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH----HHcCCcEEEEEECCCCCCc
Confidence            34456667787 456999999986533322322333333    2347899999999998865

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG1144|consensus

Probab=98.43  E-value=9.6e-07  Score=99.08  Aligned_cols=179  Identities=17%  Similarity=0.190  Sum_probs=108.4

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEE-------------eeCCe----EEEEEEEeCCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-------------SMNGV----HLKLDILDTSGE  120 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v-------------~vdg~----~v~L~I~DT~G~  120 (592)
                      .+-+..-|||+|.-..|||-|+..+.+.........++...+..++             .-+++    ---+.++||||+
T Consensus       471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh  550 (1064)
T KOG1144|consen  471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH  550 (1064)
T ss_pred             hhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence            3456678999999999999999999875444333333321111111             00111    113456999999


Q ss_pred             CCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC
Q psy1524         121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD  200 (592)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd  200 (592)
                                                                             |.|..++......||++|+|+|+..
T Consensus       551 -------------------------------------------------------EsFtnlRsrgsslC~~aIlvvdImh  575 (1064)
T KOG1144|consen  551 -------------------------------------------------------ESFTNLRSRGSSLCDLAILVVDIMH  575 (1064)
T ss_pred             -------------------------------------------------------hhhhhhhhccccccceEEEEeehhc
Confidence                                                                   8999999999999999999999976


Q ss_pred             c---CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHH--
Q psy1524         201 P---NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDT--  275 (592)
Q Consensus       201 ~---~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee--  275 (592)
                      .   .+.+.+.    .|+    ..++|+||++||+|.......              .|+.............+..+.  
T Consensus       576 GlepqtiESi~----lLR----~rktpFivALNKiDRLYgwk~--------------~p~~~i~~~lkkQ~k~v~~EF~~  633 (1064)
T KOG1144|consen  576 GLEPQTIESIN----LLR----MRKTPFIVALNKIDRLYGWKS--------------CPNAPIVEALKKQKKDVQNEFKE  633 (1064)
T ss_pred             cCCcchhHHHH----HHH----hcCCCeEEeehhhhhhccccc--------------CCCchHHHHHHHhhHHHHHHHHH
Confidence            4   4444433    122    358999999999998765211              111111111111111111111  


Q ss_pred             -----HHHHHhhcCC-------------CeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524         276 -----TESVVQVDWE-------------NGFVEASAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       276 -----~~~la~~~~~-------------~~~~EvSAktg~gVeeLf~~Li~~i~~~  313 (592)
                           ..+|+....+             +.++++||.+|+||.+|+-.|++.....
T Consensus       634 R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~  689 (1064)
T KOG1144|consen  634 RLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT  689 (1064)
T ss_pred             HHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence                 1122221111             2378999999999999999998876443

>cd01859 MJ1464 MJ1464

Probab=98.42  E-value=9.6e-07  Score=82.96  Aligned_cols=93  Identities=17%  Similarity=0.157  Sum_probs=62.4

Q ss_pred             hHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCc
Q psy1524         179 PAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDS  258 (592)
Q Consensus       179 ~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~  258 (592)
                      +.+....++++|++|+|+|++++...... .+...+    ...++|+++|+||+|+....                    
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~----~~~~~p~iiv~NK~Dl~~~~--------------------   57 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYV----LELGKKLLIVLNKADLVPKE--------------------   57 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHH----HhCCCcEEEEEEhHHhCCHH--------------------
Confidence            45667778889999999999886543321 122212    12368999999999986430                    


Q ss_pred             cccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         259 VCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       259 ~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                                 ..  .....+.. ....+++.+||+++.|++++++.+.+.+
T Consensus        58 -----------~~--~~~~~~~~-~~~~~~~~iSa~~~~gi~~L~~~l~~~~   95 (156)
T cd01859          58 -----------VL--EKWKSIKE-SEGIPVVYVSAKERLGTKILRRTIKELA   95 (156)
T ss_pred             -----------HH--HHHHHHHH-hCCCcEEEEEccccccHHHHHHHHHHHH
Confidence                       00  11111222 2345789999999999999999998776

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.41  E-value=9.8e-07  Score=91.30  Aligned_cols=92  Identities=21%  Similarity=0.227  Sum_probs=64.2

Q ss_pred             hcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCC
Q psy1524         187 SSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISG  266 (592)
Q Consensus       187 ~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  266 (592)
                      .-.|+.|+|++++.+.---.-...+..|.-.   .-..||+|-||+||...++.                          
T Consensus       108 AlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E~A--------------------------  158 (415)
T COG5257         108 ALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRERA--------------------------  158 (415)
T ss_pred             hhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHHHH--------------------------
Confidence            3469999999998753322223333323221   23578999999999976321                          


Q ss_pred             CCCCCChHHHHHHHhhcC--CCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         267 TPDQVPYDTTESVVQVDW--ENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       267 ~~r~Vs~ee~~~la~~~~--~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                         .-+++++..|.+-..  +.+++++||..+.||+-+++.|.+.+
T Consensus       159 ---lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I  201 (415)
T COG5257         159 ---LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI  201 (415)
T ss_pred             ---HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence               124567777766433  56899999999999999999999888

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.39  E-value=7.7e-07  Score=92.52  Aligned_cols=61  Identities=30%  Similarity=0.516  Sum_probs=40.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCc----------cCcee-eeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKY----------KRTIE-EMHHEDFSMNGVHLKLDILDTSGEQS  122 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~----------~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~  122 (592)
                      .++|+|+|.+|+|||||||.|++.......          ..++. ......+.-++..+.|+|+||||+++
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd   75 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGD   75 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccc
Confidence            589999999999999999999976544221          11111 22223334478899999999999843

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG3905|consensus

Probab=98.37  E-value=5.2e-06  Score=86.01  Aligned_cols=28  Identities=18%  Similarity=0.404  Sum_probs=24.5

Q ss_pred             cCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         283 DWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       283 ~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      ..+...|.+|+|...||+-+...|+..+
T Consensus       262 r~GaaLiyTSvKE~KNidllyKYivhr~  289 (473)
T KOG3905|consen  262 RYGAALIYTSVKETKNIDLLYKYIVHRS  289 (473)
T ss_pred             HcCceeEEeecccccchHHHHHHHHHHh
Confidence            4566789999999999999999998877

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.36  E-value=3.3e-07  Score=95.13  Aligned_cols=28  Identities=21%  Similarity=0.098  Sum_probs=24.0

Q ss_pred             cCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         283 DWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       283 ~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      ....+++++||++|+|+++++++|..+.
T Consensus       261 np~a~I~~vSA~tGeGld~L~~~L~~~~  288 (290)
T PRK10463        261 NPEIEIILISATSGEGMDQWLNWLETQR  288 (290)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            3467799999999999999999997643

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.34  E-value=2.6e-06  Score=91.31  Aligned_cols=25  Identities=28%  Similarity=0.355  Sum_probs=21.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...++|+|+|.+|+|||||||.|.+
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrG   57 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRG   57 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhC
Confidence            3568999999999999999999974

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.32  E-value=7.6e-06  Score=90.57  Aligned_cols=28  Identities=18%  Similarity=0.401  Sum_probs=23.9

Q ss_pred             cCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         283 DWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       283 ~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      .++...|.||++...|++-|+..|...+
T Consensus       236 ~yGAsL~yts~~~~~n~~~L~~yi~h~l  263 (472)
T PF05783_consen  236 KYGASLIYTSVKEEKNLDLLYKYILHRL  263 (472)
T ss_pred             hcCCeEEEeeccccccHHHHHHHHHHHh
Confidence            4567788899999999999998877776

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK12289 GTPase RsgA; Reviewed

Probab=98.30  E-value=2e-06  Score=92.03  Aligned_cols=93  Identities=19%  Similarity=0.282  Sum_probs=66.1

Q ss_pred             HHHHHhhhcCCcEEEEEeCCCcC-CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCc
Q psy1524         180 AMRALSISSADAFILVYAIDDPN-SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDS  258 (592)
Q Consensus       180 ~l~~~~~~~AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~  258 (592)
                      .+....+.++|.+++|+|++++. ++..+..|+..+.    ..++|+|||+||+||.+..                    
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~--------------------  136 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPT--------------------  136 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChH--------------------
Confidence            34445589999999999999876 5556676666542    2478999999999997541                    


Q ss_pred             cccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         259 VCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       259 ~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                                 ..  +....... .++..++.+||++|.|+++|++.+...+
T Consensus       137 -----------~~--~~~~~~~~-~~g~~v~~iSA~tg~GI~eL~~~L~~ki  174 (352)
T PRK12289        137 -----------EQ--QQWQDRLQ-QWGYQPLFISVETGIGLEALLEQLRNKI  174 (352)
T ss_pred             -----------HH--HHHHHHHH-hcCCeEEEEEcCCCCCHHHHhhhhccce
Confidence                       00  11111112 3456799999999999999999887644

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.30  E-value=1.2e-06  Score=90.32  Aligned_cols=90  Identities=19%  Similarity=0.257  Sum_probs=58.4

Q ss_pred             hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524         186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS  265 (592)
Q Consensus       186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  265 (592)
                      ..-+|.+++|.=..-.+...-++.=+.++..         |+|.||.|.......+        ..+             
T Consensus       162 ~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD---------i~vINKaD~~~A~~a~--------r~l-------------  211 (323)
T COG1703         162 ANMADTFLVVMIPGAGDDLQGIKAGIMEIAD---------IIVINKADRKGAEKAA--------REL-------------  211 (323)
T ss_pred             hhhcceEEEEecCCCCcHHHHHHhhhhhhhh---------eeeEeccChhhHHHHH--------HHH-------------
Confidence            4458898888766555555555554444433         6899999976542111        000             


Q ss_pred             CCCCCCChHHHHH-----HHhhcCCCeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524         266 GTPDQVPYDTTES-----VVQVDWENGFVEASAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       266 ~~~r~Vs~ee~~~-----la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~  313 (592)
                              ..+..     .....|..+++.+||.+|+||++|++.+.+.....
T Consensus       212 --------~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~  256 (323)
T COG1703         212 --------RSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL  256 (323)
T ss_pred             --------HHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence                    11111     22335778899999999999999999998876443

>KOG0468|consensus

Probab=98.29  E-value=2.6e-06  Score=94.71  Aligned_cols=119  Identities=24%  Similarity=0.309  Sum_probs=82.0

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee----------------eeE--EEEE---eeCCeEEEEEEEe
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE----------------EMH--HEDF---SMNGVHLKLDILD  116 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~----------------d~~--~~~v---~vdg~~v~L~I~D  116 (592)
                      ......+|+++|.-..|||+|+.-|+.....+-+..+-.                ...  ..++   ..+++.+.++|.|
T Consensus       124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD  203 (971)
T KOG0468|consen  124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD  203 (971)
T ss_pred             CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence            335668999999999999999999997654422111110                000  0111   1267889999999


Q ss_pred             CCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEE
Q psy1524         117 TSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVY  196 (592)
Q Consensus       117 T~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVy  196 (592)
                      |||+                                                       -.|..-....++-+|++++|+
T Consensus       204 TPGH-------------------------------------------------------VnF~DE~ta~l~~sDgvVlvv  228 (971)
T KOG0468|consen  204 TPGH-------------------------------------------------------VNFSDETTASLRLSDGVVLVV  228 (971)
T ss_pred             CCCc-------------------------------------------------------ccchHHHHHHhhhcceEEEEE
Confidence            9999                                                       445555566688899999999


Q ss_pred             eCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524         197 AIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD  236 (592)
Q Consensus       197 Dvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~  236 (592)
                      |+.+.-++..-.     +.++....+.|+++|.||+|...
T Consensus       229 Dv~EGVmlntEr-----~ikhaiq~~~~i~vviNKiDRLi  263 (971)
T KOG0468|consen  229 DVAEGVMLNTER-----IIKHAIQNRLPIVVVINKVDRLI  263 (971)
T ss_pred             EcccCceeeHHH-----HHHHHHhccCcEEEEEehhHHHH
Confidence            998876654322     22222345789999999999764

>KOG0461|consensus

Probab=98.28  E-value=1.3e-05  Score=83.69  Aligned_cols=61  Identities=15%  Similarity=0.323  Sum_probs=39.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC----CCCCCccCce----eeeEEEEEee-------CCeEEEEEEEeCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN----TFSPKYKRTI----EEMHHEDFSM-------NGVHLKLDILDTSGE  120 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~----~f~~~~~~Tt----~d~~~~~v~v-------dg~~v~L~I~DT~G~  120 (592)
                      +..+++.++|.-.+|||||..++..-    .|......+.    .|.-...+.+       .+.+..+.++|+||+
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH   80 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH   80 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc
Confidence            34589999999999999999999832    3332222221    1222222222       456678889999999

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=98.26  E-value=3.1e-06  Score=82.46  Aligned_cols=82  Identities=15%  Similarity=0.086  Sum_probs=53.5

Q ss_pred             CCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCC
Q psy1524         189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTP  268 (592)
Q Consensus       189 AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  268 (592)
                      .+.-|+|+|++..+-.   .     .+-...... -=++|.||.||...                               
T Consensus       118 d~~~v~VidvteGe~~---P-----~K~gP~i~~-aDllVInK~DLa~~-------------------------------  157 (202)
T COG0378         118 DHLRVVVIDVTEGEDI---P-----RKGGPGIFK-ADLLVINKTDLAPY-------------------------------  157 (202)
T ss_pred             hceEEEEEECCCCCCC---c-----ccCCCceeE-eeEEEEehHHhHHH-------------------------------
Confidence            3488999999876421   0     000000011 35799999999865                               


Q ss_pred             CCCChHHHHHHHh-hcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         269 DQVPYDTTESVVQ-VDWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       269 r~Vs~ee~~~la~-~~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      -..+.+....-++ .....+++++|+++|+|++++++++...+
T Consensus       158 v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         158 VGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             hCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            2333444444433 34577899999999999999999887654

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.26  E-value=2.7e-06  Score=88.73  Aligned_cols=85  Identities=15%  Similarity=0.153  Sum_probs=63.7

Q ss_pred             hhhcCCcEEEEEeCCCcC-CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCcccccc
Q psy1524         185 SISSADAFILVYAIDDPN-SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQ  263 (592)
Q Consensus       185 ~~~~AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  263 (592)
                      .+.++|++++|+|++++. ++..+..|+..+..    .++|+++|+||+||.++.                         
T Consensus        75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~-------------------------  125 (287)
T cd01854          75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDE-------------------------  125 (287)
T ss_pred             EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChH-------------------------
Confidence            478899999999999998 88888888776644    368999999999996531                         


Q ss_pred             CCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHH
Q psy1524         264 ISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELL  307 (592)
Q Consensus       264 ~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li  307 (592)
                              .......... ..+.+++.+||+++.|+++++..+.
T Consensus       126 --------~~~~~~~~~~-~~g~~v~~vSA~~g~gi~~L~~~L~  160 (287)
T cd01854         126 --------EEELELVEAL-ALGYPVLAVSAKTGEGLDELREYLK  160 (287)
T ss_pred             --------HHHHHHHHHH-hCCCeEEEEECCCCccHHHHHhhhc
Confidence                    0011112222 3467899999999999999987653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.22  E-value=1.4e-06  Score=88.59  Aligned_cols=91  Identities=18%  Similarity=0.217  Sum_probs=55.1

Q ss_pred             hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524         186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS  265 (592)
Q Consensus       186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  265 (592)
                      ..-+|.+++|.-..-.+...-++.=+.++         .=|+|.||+|+....+..                        
T Consensus       140 ~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vVNKaD~~gA~~~~------------------------  186 (266)
T PF03308_consen  140 ADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVVNKADRPGADRTV------------------------  186 (266)
T ss_dssp             HTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEEE--SHHHHHHHH------------------------
T ss_pred             HHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEEeCCChHHHHHHH------------------------
Confidence            45589999999877666655555444444         337899999976542111                        


Q ss_pred             CCCCCCChHHHHHHHh---hcCCCeEEEcccCCCccHHHHHHHHHHHHHHhc
Q psy1524         266 GTPDQVPYDTTESVVQ---VDWENGFVEASAKDNTNITQVFKELLVQAKVKY  314 (592)
Q Consensus       266 ~~~r~Vs~ee~~~la~---~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~~  314 (592)
                           .....+..+..   ..|..+++.|||.++.||+++++.|.+......
T Consensus       187 -----~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~  233 (266)
T PF03308_consen  187 -----RDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLK  233 (266)
T ss_dssp             -----HHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence                 00112222222   235578999999999999999999888654443

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG0458|consensus

Probab=98.21  E-value=9.1e-06  Score=89.89  Aligned_cols=25  Identities=32%  Similarity=0.630  Sum_probs=22.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...+.++++|...+|||||+-+++.
T Consensus       175 k~~l~lvv~GhVdaGKSTLmG~lLy  199 (603)
T KOG0458|consen  175 KDHLNLVVLGHVDAGKSTLMGHLLY  199 (603)
T ss_pred             ccceEEEEEeccccchhhhhhHHHH
Confidence            3679999999999999999999884

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.20  E-value=4e-06  Score=90.17  Aligned_cols=95  Identities=18%  Similarity=0.210  Sum_probs=68.3

Q ss_pred             CcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCC
Q psy1524         175 TNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSG  254 (592)
Q Consensus       175 ~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~  254 (592)
                      .+.|..+...++..++++++|+|+.|..     ..|...+.+..  .+.|+++|+||+|+...                 
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~--~~~piilV~NK~DLl~k-----------------  105 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV--GGNPVLLVGNKIDLLPK-----------------  105 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh--CCCCEEEEEEchhhCCC-----------------
Confidence            3788899999999999999999997754     22445555442  36799999999999753                 


Q ss_pred             CCCccccccCCCCCCCCChHHHHHH----HhhcCCC---eEEEcccCCCccHHHHHHHHHHH
Q psy1524         255 LPDSVCAHQISGTPDQVPYDTTESV----VQVDWEN---GFVEASAKDNTNITQVFKELLVQ  309 (592)
Q Consensus       255 ~~~~~~~~~~~~~~r~Vs~ee~~~l----a~~~~~~---~~~EvSAktg~gVeeLf~~Li~~  309 (592)
                                     .+..+....+    ++ ..+.   .++++||++|.|++++|+.+.+.
T Consensus       106 ---------------~~~~~~~~~~l~~~~k-~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       106 ---------------SVNLSKIKEWMKKRAK-ELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             ---------------CCCHHHHHHHHHHHHH-HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence                           1222333322    33 2222   48999999999999999998654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.18  E-value=1.2e-05  Score=86.73  Aligned_cols=160  Identities=19%  Similarity=0.290  Sum_probs=95.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcC--CCCCCccCce------------e-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYN--TFSPKYKRTI------------E-EMHHEDFSMNGVHLKLDILDTSGEQSGKGL  126 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~--~f~~~~~~Tt------------~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~  126 (592)
                      .-+|+||-.-.-|||||+..|+..  .|.+...-.-            + ....+..-++...+.++|+||||+.+    
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHAD----   80 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHAD----   80 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCC----
Confidence            358999999999999999999943  4442111100            0 12222223344447788899999932    


Q ss_pred             cccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHH
Q psy1524         127 KCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEE  206 (592)
Q Consensus       127 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~  206 (592)
                                                                         |---....+.-.|++++++|+.+..- -.
T Consensus        81 ---------------------------------------------------FGGEVERvl~MVDgvlLlVDA~EGpM-PQ  108 (603)
T COG1217          81 ---------------------------------------------------FGGEVERVLSMVDGVLLLVDASEGPM-PQ  108 (603)
T ss_pred             ---------------------------------------------------ccchhhhhhhhcceEEEEEEcccCCC-Cc
Confidence                                                               22222223556899999999987421 11


Q ss_pred             HHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh-----
Q psy1524         207 IRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ-----  281 (592)
Q Consensus       207 l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~-----  281 (592)
                      -+..+....+    .+.+-|+|.||+|.......                             .|-.+....|..     
T Consensus       109 TrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~-----------------------------~Vvd~vfDLf~~L~A~d  155 (603)
T COG1217         109 TRFVLKKALA----LGLKPIVVINKIDRPDARPD-----------------------------EVVDEVFDLFVELGATD  155 (603)
T ss_pred             hhhhHHHHHH----cCCCcEEEEeCCCCCCCCHH-----------------------------HHHHHHHHHHHHhCCCh
Confidence            2222222222    35677889999998876321                             111122222221     


Q ss_pred             hcCCCeEEEcccCCCc----------cHHHHHHHHHHHH
Q psy1524         282 VDWENGFVEASAKDNT----------NITQVFKELLVQA  310 (592)
Q Consensus       282 ~~~~~~~~EvSAktg~----------gVeeLf~~Li~~i  310 (592)
                      .....+++..||+.|.          ++.-||+.|++.+
T Consensus       156 eQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv  194 (603)
T COG1217         156 EQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV  194 (603)
T ss_pred             hhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence            1245678899998775          5778888888877

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.15  E-value=4.1e-06  Score=77.75  Aligned_cols=52  Identities=21%  Similarity=0.324  Sum_probs=37.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCC--CccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSP--KYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~--~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      +++++|.+|||||||+|++.+.....  ....++  .....+.+++   .+.||||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKT--KHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcc--cceEEEEeCC---CEEEEECCCc
Confidence            89999999999999999999876642  222222  2334455554   3567999997

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0082|consensus

Probab=98.15  E-value=3.6e-05  Score=81.81  Aligned_cols=119  Identities=17%  Similarity=0.192  Sum_probs=70.5

Q ss_pred             hHHHHHhhhcCCcEEEEEeCCCcCC----------HHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCc
Q psy1524         179 PAMRALSISSADAFILVYAIDDPNS----------FEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPF  248 (592)
Q Consensus       179 ~~l~~~~~~~AD~iIlVyDvsd~~S----------fe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~  248 (592)
                      +.-|.+++.++++||||+++++-+-          ..+...+++.+.+...=.+.++||.+||.||...           
T Consensus       209 RrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeE-----------  277 (354)
T KOG0082|consen  209 RKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEE-----------  277 (354)
T ss_pred             hhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHH-----------
Confidence            3445567999999999999876321          1122224444444433457899999999999875           


Q ss_pred             ccccCCCCCccccccCCCCCCCCChHHHHHHHhh--------c-CCCeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524         249 QTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV--------D-WENGFVEASAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       249 ~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~--------~-~~~~~~EvSAktg~gVeeLf~~Li~~i~~~  313 (592)
                        .+...|.+.+-.+-.+   .-+.+++..+.+.        . ..+-+..+.|..-.||+.+|..+.+.+...
T Consensus       278 --Ki~~~~~~~~Fpdy~G---~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~  346 (354)
T KOG0082|consen  278 --KIKKVPLTDCFPDYKG---VNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN  346 (354)
T ss_pred             --HhccCchhhhCcCCCC---CCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence              1222222222222211   1233344433221        1 122245678888899999999999988543

>PRK00098 GTPase RsgA; Reviewed

Probab=98.14  E-value=4.4e-06  Score=87.56  Aligned_cols=84  Identities=19%  Similarity=0.225  Sum_probs=59.9

Q ss_pred             hhcCCcEEEEEeCCCcCCHHHH-HHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccC
Q psy1524         186 ISSADAFILVYAIDDPNSFEEI-RLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQI  264 (592)
Q Consensus       186 ~~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  264 (592)
                      ..++|++++|+|++++.++..+ ..|+..+..    .++|+++|+||+||.++.                          
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~--------------------------  127 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDL--------------------------  127 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCH--------------------------
Confidence            6889999999999988765554 556555433    478999999999996330                          


Q ss_pred             CCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHH
Q psy1524         265 SGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKEL  306 (592)
Q Consensus       265 ~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~L  306 (592)
                           . .........+ ..+.+++++||+++.|++++++.+
T Consensus       128 -----~-~~~~~~~~~~-~~g~~v~~vSA~~g~gi~~L~~~l  162 (298)
T PRK00098        128 -----E-EARELLALYR-AIGYDVLELSAKEGEGLDELKPLL  162 (298)
T ss_pred             -----H-HHHHHHHHHH-HCCCeEEEEeCCCCccHHHHHhhc
Confidence                 0 0111222222 345689999999999999998776

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.10  E-value=1.3e-05  Score=84.09  Aligned_cols=153  Identities=26%  Similarity=0.266  Sum_probs=89.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC------------CCccCcee----------------------eeEEEEEee
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS------------PKYKRTIE----------------------EMHHEDFSM  105 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~------------~~~~~Tt~----------------------d~~~~~v~v  105 (592)
                      ...++++.+|.-.=||||||-||+.+.-.            +....|.+                      |...+.+..
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            45689999999999999999999965211            11111211                      222222222


Q ss_pred             CCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHh
Q psy1524         106 NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALS  185 (592)
Q Consensus       106 dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~  185 (592)
                      +..  ++.|-||||+                                                       +.|-.-...-
T Consensus        84 ~KR--kFIiADTPGH-------------------------------------------------------eQYTRNMaTG  106 (431)
T COG2895          84 EKR--KFIIADTPGH-------------------------------------------------------EQYTRNMATG  106 (431)
T ss_pred             ccc--eEEEecCCcH-------------------------------------------------------HHHhhhhhcc
Confidence            333  4556999999                                                       5544433344


Q ss_pred             hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524         186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS  265 (592)
Q Consensus       186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  265 (592)
                      ...||+.|+++|+...  ......-+..|....  .-..+||+.||+||.+-++..      |                 
T Consensus       107 ASTadlAIlLVDAR~G--vl~QTrRHs~I~sLL--GIrhvvvAVNKmDLvdy~e~~------F-----------------  159 (431)
T COG2895         107 ASTADLAILLVDARKG--VLEQTRRHSFIASLL--GIRHVVVAVNKMDLVDYSEEV------F-----------------  159 (431)
T ss_pred             cccccEEEEEEecchh--hHHHhHHHHHHHHHh--CCcEEEEEEeeecccccCHHH------H-----------------
Confidence            5679999999998432  222222223333332  234789999999998752210      0                 


Q ss_pred             CCCCCCChHHHHHHHhhcC--CCeEEEcccCCCccHH
Q psy1524         266 GTPDQVPYDTTESVVQVDW--ENGFVEASAKDNTNIT  300 (592)
Q Consensus       266 ~~~r~Vs~ee~~~la~~~~--~~~~~EvSAktg~gVe  300 (592)
                         ..+ ..+-..++....  ...++++||..|.||-
T Consensus       160 ---~~I-~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         160 ---EAI-VADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             ---HHH-HHHHHHHHHHcCCCcceEEechhccCCccc
Confidence               001 112233444322  3469999999999985

>KOG2486|consensus

Probab=98.10  E-value=5.3e-06  Score=84.63  Aligned_cols=61  Identities=20%  Similarity=0.201  Sum_probs=38.8

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCC-CccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSP-KYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~-~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      +.+....++++|.+|||||||||-++...... ...++.+.+.......-+..  +.++|.||.
T Consensus       132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~--~~~vDlPG~  193 (320)
T KOG2486|consen  132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKS--WYEVDLPGY  193 (320)
T ss_pred             CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccce--EEEEecCCc
Confidence            35677999999999999999999999765432 22223332222222222333  444999995

>PRK12288 GTPase RsgA; Reviewed

Probab=98.08  E-value=1.3e-05  Score=85.81  Aligned_cols=89  Identities=15%  Similarity=0.123  Sum_probs=65.3

Q ss_pred             hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524         186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS  265 (592)
Q Consensus       186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  265 (592)
                      ..++|.+++|++++...++..+..|+..+..    .++|+|||+||+||.+...                          
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~VIVlNK~DL~~~~~--------------------------  167 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEPLIVLNKIDLLDDEG--------------------------  167 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCcHH--------------------------
Confidence            5779999999999988899999998775532    4689999999999975410                          


Q ss_pred             CCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHH
Q psy1524         266 GTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQ  309 (592)
Q Consensus       266 ~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~  309 (592)
                         +.. ......... ..+.+++++||+++.|++++++.+...
T Consensus       168 ---~~~-~~~~~~~y~-~~g~~v~~vSA~tg~GideL~~~L~~k  206 (347)
T PRK12288        168 ---RAF-VNEQLDIYR-NIGYRVLMVSSHTGEGLEELEAALTGR  206 (347)
T ss_pred             ---HHH-HHHHHHHHH-hCCCeEEEEeCCCCcCHHHHHHHHhhC
Confidence               000 111111222 345689999999999999999888654

>KOG3886|consensus

Probab=98.01  E-value=7.5e-06  Score=81.43  Aligned_cols=122  Identities=20%  Similarity=0.335  Sum_probs=76.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      -||+++|.+|+||||+=.-+..+..  ...-...+-|.....+.+-| .+.|++||.+|++.                .+
T Consensus         5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~----------------fm   67 (295)
T KOG3886|consen    5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEE----------------FM   67 (295)
T ss_pred             ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHH----------------HH
Confidence            4999999999999998766654432  22222222243333333322 26788899999910                00


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHH---HHHHh
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRD---HIFET  217 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~---~L~~~  217 (592)
                      |                                  .-+....+..+++.+++++|||++..+-..++..+-.   .+.+ 
T Consensus        68 e----------------------------------n~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~-  112 (295)
T KOG3886|consen   68 E----------------------------------NYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQ-  112 (295)
T ss_pred             H----------------------------------HHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHh-
Confidence            0                                  0111123345788999999999988765555544433   3333 


Q ss_pred             hcCCCCCEEEEEeCCCCccc
Q psy1524         218 KASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~  237 (592)
                       ..+...|.+...|.||...
T Consensus       113 -~SP~AkiF~l~hKmDLv~~  131 (295)
T KOG3886|consen  113 -NSPEAKIFCLLHKMDLVQE  131 (295)
T ss_pred             -cCCcceEEEEEeechhccc
Confidence             4577889999999999865

>KOG1954|consensus

Probab=97.97  E-value=6.2e-05  Score=79.36  Aligned_cols=130  Identities=22%  Similarity=0.306  Sum_probs=83.3

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCC---ccCceeeeEEEEE-----eeCCeEE---------------------
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPK---YKRTIEEMHHEDF-----SMNGVHL---------------------  110 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~---~~~Tt~d~~~~~v-----~vdg~~v---------------------  110 (592)
                      +...-|+++|.-..||||+|+.|+.+.|..-   ..||+..+.....     .+.|..+                     
T Consensus        56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR  135 (532)
T KOG1954|consen   56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR  135 (532)
T ss_pred             ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence            4456799999999999999999999988732   2344432221111     1111111                     


Q ss_pred             ------------EEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcch
Q psy1524         111 ------------KLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEF  178 (592)
Q Consensus       111 ------------~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  178 (592)
                                  .++|+||||.-++....                                            .+-.-.|
T Consensus       136 f~csqmp~~vLe~vtiVdtPGILsgeKQr--------------------------------------------isR~ydF  171 (532)
T KOG1954|consen  136 FMCSQLPNQVLESVTIVDTPGILSGEKQR--------------------------------------------ISRGYDF  171 (532)
T ss_pred             HHHhcCChhhhhheeeeccCcccccchhc--------------------------------------------ccccCCh
Confidence                        36678888873221100                                            0111456


Q ss_pred             hHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         179 PAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       179 ~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      .....-+..++|.||++||...-+--++.+..+..|+.+    .-.|-||.||.|..+.
T Consensus       172 ~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----EdkiRVVLNKADqVdt  226 (532)
T KOG1954|consen  172 TGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----EDKIRVVLNKADQVDT  226 (532)
T ss_pred             HHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----cceeEEEeccccccCH
Confidence            777888899999999999987655445555566655443    3457788999998765

>KOG2655|consensus

Probab=97.97  E-value=7.2e-05  Score=79.64  Aligned_cols=64  Identities=30%  Similarity=0.487  Sum_probs=45.7

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCC--------c-cCcee-eeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPK--------Y-KRTIE-EMHHEDFSMNGVHLKLDILDTSGEQS  122 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~--------~-~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~  122 (592)
                      +-..|.++++|++|.|||||||.|+...+..+        . ..|.. +.....+.-+|.++.|+++||||+++
T Consensus        18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD   91 (366)
T KOG2655|consen   18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGD   91 (366)
T ss_pred             cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcc
Confidence            34569999999999999999999986654422        1 11222 23333334488999999999999944

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.97  E-value=6.7e-05  Score=81.01  Aligned_cols=154  Identities=18%  Similarity=0.174  Sum_probs=98.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC----CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFS----PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~----~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      -|+..|.---|||||+..+.+..-.    .....++.|.-.......+.  .+.|+|.||+                   
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~--~~~fIDvpgh-------------------   60 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG--VMGFIDVPGH-------------------   60 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC--ceEEeeCCCc-------------------
Confidence            4667788889999999999965332    23344554544444444443  6677999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc---CCHHHHHHHHHHHHH
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP---NSFEEIRLIRDHIFE  216 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~---~Sfe~l~~~l~~L~~  216 (592)
                                                          ++|-.-.-..+...|.+++|+|.++.   .+-+.+.     +.+
T Consensus        61 ------------------------------------~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~-----iLd   99 (447)
T COG3276          61 ------------------------------------PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLL-----ILD   99 (447)
T ss_pred             ------------------------------------HHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHH-----HHH
Confidence                                                55544444456679999999999754   3333332     222


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      ..  .....++|.||+|..+..+.                            .++ ..+...... ....++|.+|+++|
T Consensus       100 ll--gi~~giivltk~D~~d~~r~----------------------------e~~-i~~Il~~l~-l~~~~i~~~s~~~g  147 (447)
T COG3276         100 LL--GIKNGIIVLTKADRVDEARI----------------------------EQK-IKQILADLS-LANAKIFKTSAKTG  147 (447)
T ss_pred             hc--CCCceEEEEeccccccHHHH----------------------------HHH-HHHHHhhcc-cccccccccccccC
Confidence            21  23356999999999875210                            000 111111111 23456899999999


Q ss_pred             ccHHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQAK  311 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~  311 (592)
                      .||++|-+.|...+.
T Consensus       148 ~GI~~Lk~~l~~L~~  162 (447)
T COG3276         148 RGIEELKNELIDLLE  162 (447)
T ss_pred             CCHHHHHHHHHHhhh
Confidence            999999999998873

>cd01858 NGP_1 NGP-1

Probab=97.95  E-value=2.1e-05  Score=74.13  Aligned_cols=55  Identities=22%  Similarity=0.306  Sum_probs=36.8

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      ..++|+++|.+|||||||+|+|.+....  .....+|...  ..+..++ .  +.++||||.
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~-~--~~liDtPGi  157 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVW--QYITLMK-R--IYLIDCPGV  157 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeE--EEEEcCC-C--EEEEECcCC
Confidence            3578999999999999999999976443  3444444321  2222332 2  446999994

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=97.95  E-value=8e-05  Score=78.88  Aligned_cols=63  Identities=22%  Similarity=0.480  Sum_probs=45.9

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCC----------ccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPK----------YKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQS  122 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~----------~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~  122 (592)
                      -..+.|+++|.+|.|||||+|.|++......          ..+|+. ..+...+.-++.++.|+++||||+++
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD   94 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGD   94 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccc
Confidence            4569999999999999999999997644322          123333 23333344488899999999999954

>TIGR00092 GTP-binding protein YchF

Probab=97.91  E-value=7.5e-05  Score=80.18  Aligned_cols=59  Identities=17%  Similarity=0.067  Sum_probs=45.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCe---------------EEEEEEEeCCCCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGV---------------HLKLDILDTSGEQ  121 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~---------------~v~L~I~DT~G~~  121 (592)
                      +++.|||.+|||||||+|.+++...  ..+|..||.+.....+.+.+.               ...+++.|.||..
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv   78 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLV   78 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccc
Confidence            7999999999999999999997765  367777776665566655442               2356789999983

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01858 NGP_1 NGP-1

Probab=97.91  E-value=4e-05  Score=72.23  Aligned_cols=90  Identities=17%  Similarity=0.144  Sum_probs=57.0

Q ss_pred             hhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccC
Q psy1524         185 SISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQI  264 (592)
Q Consensus       185 ~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  264 (592)
                      .+.+||++++|+|++++..-. ...+...+..  ...++|+|+|.||+|+.++.                          
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~--~~~~~p~ilVlNKiDl~~~~--------------------------   55 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTR-CKHVEEYLKK--EKPHKHLIFVLNKCDLVPTW--------------------------   55 (157)
T ss_pred             hhhhCCEEEEEEECCCCcccc-CHHHHHHHHh--ccCCCCEEEEEEchhcCCHH--------------------------
Confidence            478899999999999874321 1222222222  13358999999999997541                          


Q ss_pred             CCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         265 SGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       265 ~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                           .+ ......+.+ ......+.+||+++.|++++++.+...+
T Consensus        56 -----~~-~~~~~~~~~-~~~~~~~~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          56 -----VT-ARWVKILSK-EYPTIAFHASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             -----HH-HHHHHHHhc-CCcEEEEEeeccccccHHHHHHHHHHHH
Confidence                 00 111222222 2223357899999999999998886654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=97.91  E-value=2.4e-05  Score=74.95  Aligned_cols=56  Identities=23%  Similarity=0.313  Sum_probs=38.7

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      ...++|+++|.+|||||||+|++.+..+.  .....|+.+  ...+.++   ..+.++||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~--~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKG--IQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEee--eEEEEec---CCEEEEECCCC
Confidence            45589999999999999999999987663  222233322  2223343   23567999996

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=97.90  E-value=0.0001  Score=85.29  Aligned_cols=117  Identities=15%  Similarity=0.223  Sum_probs=77.0

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC--CCCC---CccC-cee-----------eeE--EEEEeeCCeEEEEEEEeCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSP---KYKR-TIE-----------EMH--HEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~---~~~~-Tt~-----------d~~--~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      ...-+|.|+|.-.+|||||..+++..  ....   .... ++.           ...  ...+...+ .+.++|+||||+
T Consensus         8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGH   86 (697)
T COG0480           8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGH   86 (697)
T ss_pred             ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCc
Confidence            45679999999999999999999832  1111   0000 010           111  11222333 577888999999


Q ss_pred             CCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC
Q psy1524         121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD  200 (592)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd  200 (592)
                                                                             -.|..-....++-+|++|+|+|+..
T Consensus        87 -------------------------------------------------------VDFt~EV~rslrvlDgavvVvdave  111 (697)
T COG0480          87 -------------------------------------------------------VDFTIEVERSLRVLDGAVVVVDAVE  111 (697)
T ss_pred             -------------------------------------------------------cccHHHHHHHHHhhcceEEEEECCC
Confidence                                                                   4455555666888999999999987


Q ss_pred             cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         201 PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       201 ~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      .-....-.-| ..+.    ..++|.|++.||+|....
T Consensus       112 GV~~QTEtv~-rqa~----~~~vp~i~fiNKmDR~~a  143 (697)
T COG0480         112 GVEPQTETVW-RQAD----KYGVPRILFVNKMDRLGA  143 (697)
T ss_pred             CeeecHHHHH-HHHh----hcCCCeEEEEECcccccc
Confidence            6544333333 3332    347999999999998865

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.88  E-value=4.5e-05  Score=71.80  Aligned_cols=84  Identities=15%  Similarity=0.114  Sum_probs=55.1

Q ss_pred             CcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCC
Q psy1524         190 DAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPD  269 (592)
Q Consensus       190 D~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r  269 (592)
                      |++|+|+|++++.+....  ++..  ......++|+|+|+||+|+....                               
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~--~~~~~~~~p~IiVlNK~Dl~~~~-------------------------------   45 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIER--VLIKEKGKKLILVLNKADLVPKE-------------------------------   45 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHH--HHHhcCCCCEEEEEechhcCCHH-------------------------------
Confidence            789999999988655432  2221  11123478999999999996441                               


Q ss_pred             CCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         270 QVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       270 ~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      .+ .+....+.. .....++.+||++|.|++++++.+.+..
T Consensus        46 ~~-~~~~~~~~~-~~~~~ii~vSa~~~~gi~~L~~~i~~~~   84 (155)
T cd01849          46 VL-RKWLAYLRH-SYPTIPFKISATNGQGIEKKESAFTKQT   84 (155)
T ss_pred             HH-HHHHHHHHh-hCCceEEEEeccCCcChhhHHHHHHHHh
Confidence            00 011112222 2345689999999999999999988765

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.87  E-value=3.3e-05  Score=74.64  Aligned_cols=56  Identities=29%  Similarity=0.404  Sum_probs=38.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      ...++|+++|.+|||||||+|+|++....  .....+|....  .+.++.   .+.++||||.
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~--~~~~~~---~~~l~DtPGi  172 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQ--EVHLDK---KVKLLDSPGI  172 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceE--EEEeCC---CEEEEECcCC
Confidence            44589999999999999999999976542  34444444322  223332   3556999994

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.78  E-value=5.2e-05  Score=78.56  Aligned_cols=56  Identities=23%  Similarity=0.399  Sum_probs=39.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      ...++|+|+|.+|||||||+|+|.+....  .....+|...  ..+.++.   .+.|+||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC---CEEEEECCCc
Confidence            45689999999999999999999976543  3333444322  3344433   3467999998

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG1491|consensus

Probab=97.76  E-value=5.5e-05  Score=79.16  Aligned_cols=62  Identities=18%  Similarity=0.268  Sum_probs=47.4

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEee---------------CCeEEEEEEEeCCCCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSM---------------NGVHLKLDILDTSGEQS  122 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~v---------------dg~~v~L~I~DT~G~~~  122 (592)
                      ..+++.|||.+|||||||+|.|++... ..+++.+|-|.....+.+               ...+..++++|++|...
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk   96 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK   96 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence            458999999999999999999997755 467777776655555543               22356789999999843

>cd01856 YlqF YlqF

Probab=97.76  E-value=0.0001  Score=70.54  Aligned_cols=89  Identities=19%  Similarity=0.142  Sum_probs=58.2

Q ss_pred             HHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccc
Q psy1524         181 MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVC  260 (592)
Q Consensus       181 l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~  260 (592)
                      .....+.+||++++|+|++++....+. .+..    .  ..+.|+++|.||+|+.+..                      
T Consensus        12 ~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~----~--~~~k~~ilVlNK~Dl~~~~----------------------   62 (171)
T cd01856          12 QIKEKLKLVDLVIEVRDARIPLSSRNP-LLEK----I--LGNKPRIIVLNKADLADPK----------------------   62 (171)
T ss_pred             HHHHHHhhCCEEEEEeeccCccCcCCh-hhHh----H--hcCCCEEEEEehhhcCChH----------------------
Confidence            345568899999999999876543221 1111    1  1257999999999986430                      


Q ss_pred             cccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         261 AHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       261 ~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                               .+  .....+.+ .....++.+||+++.|++++.+.+...+
T Consensus        63 ---------~~--~~~~~~~~-~~~~~vi~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          63 ---------KT--KKWLKYFE-SKGEKVLFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             ---------HH--HHHHHHHH-hcCCeEEEEECCCcccHHHHHHHHHHHH
Confidence                     00  11111111 1234578999999999999999988776

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG1547|consensus

Probab=97.75  E-value=0.00014  Score=72.92  Aligned_cols=63  Identities=27%  Similarity=0.418  Sum_probs=46.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCC---------CccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSP---------KYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQS  122 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~---------~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~  122 (592)
                      -..|+|++||.+|.|||||+|.+.......         .+..|++ ...+..+.-++.+..++++||||+++
T Consensus        44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD  116 (336)
T KOG1547|consen   44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD  116 (336)
T ss_pred             cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence            467999999999999999999998553321         2333443 33344455588899999999999943

>cd01855 YqeH YqeH

Probab=97.74  E-value=3.4e-05  Score=74.96  Aligned_cols=54  Identities=24%  Similarity=0.358  Sum_probs=36.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCC----------CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTF----------SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f----------~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      ..+|+|+|.+|||||||+|+|.+...          ......||.+..  .+.++.   .+.|+||||.
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~~---~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLI--KIPLGN---GKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeE--EEecCC---CCEEEeCcCC
Confidence            35899999999999999999996532          123334443322  233333   3567999995

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.72  E-value=8.8e-05  Score=77.33  Aligned_cols=56  Identities=23%  Similarity=0.388  Sum_probs=39.3

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      ...++|+|+|.+|||||||+|+|++....  .....+|...  ..+.+++ .  +.++||||.
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~-~--~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK-G--LELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC-c--EEEEECCCc
Confidence            45689999999999999999999987543  3333444332  2334443 2  456999998

>cd01859 MJ1464 MJ1464

Probab=97.69  E-value=0.0001  Score=69.22  Aligned_cols=56  Identities=32%  Similarity=0.362  Sum_probs=36.8

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEE-EeeCCeEEEEEEEeCCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHED-FSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~-v~vdg~~v~L~I~DT~G~  120 (592)
                      ...+|+++|.+|||||||+|+|.+.... .+.++.+...... +..++   .+.||||||.
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi  156 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPGV  156 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence            4578999999999999999999965432 2333333222222 22333   4667999994

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=97.63  E-value=0.00056  Score=73.87  Aligned_cols=117  Identities=16%  Similarity=0.265  Sum_probs=76.0

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHH--cCCCC--------CCccCcee-----------eeEEEEEeeCCeEEEEEEEeCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFL--YNTFS--------PKYKRTIE-----------EMHHEDFSMNGVHLKLDILDTSG  119 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~--~~~f~--------~~~~~Tt~-----------d~~~~~v~vdg~~v~L~I~DT~G  119 (592)
                      ++-..+||--|.+|||||..+|+  ++.+.        .....++.           ...+...+++-..+.++|.||||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG   90 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG   90 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence            44578999999999999999988  33221        11111111           12333445555567788899999


Q ss_pred             CCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCC
Q psy1524         120 EQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAID  199 (592)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvs  199 (592)
                      +                                                       +.|+.-.-..+..+|.+|+|+|+.
T Consensus        91 H-------------------------------------------------------eDFSEDTYRtLtAvDsAvMVIDaA  115 (528)
T COG4108          91 H-------------------------------------------------------EDFSEDTYRTLTAVDSAVMVIDAA  115 (528)
T ss_pred             c-------------------------------------------------------cccchhHHHHHHhhheeeEEEecc
Confidence            9                                                       445444444567799999999987


Q ss_pred             CcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         200 DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       200 d~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      ..-.-..+ .++    +.+...++||+-..||.|....
T Consensus       116 KGiE~qT~-KLf----eVcrlR~iPI~TFiNKlDR~~r  148 (528)
T COG4108         116 KGIEPQTL-KLF----EVCRLRDIPIFTFINKLDREGR  148 (528)
T ss_pred             cCccHHHH-HHH----HHHhhcCCceEEEeeccccccC
Confidence            65432222 222    3333468999999999997654

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.61  E-value=0.0001  Score=78.20  Aligned_cols=56  Identities=29%  Similarity=0.411  Sum_probs=38.7

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      ...++|.|||.+|||||||||+|++....  ...+.+|..  ...+.++..   +.++||||.
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~--~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKG--IQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecc--eEEEEcCCC---eEEecCCCc
Confidence            34578999999999999999999977553  333333332  222333332   556999998

>KOG0448|consensus

Probab=97.59  E-value=0.00035  Score=78.83  Aligned_cols=154  Identities=18%  Similarity=0.216  Sum_probs=80.3

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...||+|.|+.++||||++|+++..... +...++|.-+ .....-+|....+.+=++.+.                 -+
T Consensus       108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF-~~VegadG~e~vl~~~~s~ek-----------------~d  169 (749)
T KOG0448|consen  108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCF-LEVEGADGAEAVLATEGSEEK-----------------ID  169 (749)
T ss_pred             cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceee-eeecccCCcceeeccCCCccc-----------------cc
Confidence            4579999999999999999999977665 4444444322 111122443333221111111                 00


Q ss_pred             chhHH-HHHhhccCC----------ccccccccCcchhhhccccc---cCcchhHHHHHhhhcCCcEEEEEeCCCcCCHH
Q psy1524         140 LDKVC-LRRALNQRP----------MAYKTDVQLPSKLTSLAMTC---STNEFPAMRALSISSADAFILVYAIDDPNSFE  205 (592)
Q Consensus       140 ~e~~~-~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~---~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe  205 (592)
                      +..+. +-.++...+          .-.+.+-.++.....+.+..   ...++.+-...+..+||++|+|..+-+.-+..
T Consensus       170 ~~ti~~~~haL~~~~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~s  249 (749)
T KOG0448|consen  170 MKTINQLAHALKPDKDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLS  249 (749)
T ss_pred             HHHHhHHHHhcCcccccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHH
Confidence            00010 112222211          01111122333333333432   33455566677889999999999876654443


Q ss_pred             HHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         206 EIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       206 ~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      +-..+.. .    ...++-|.++-||.|...+
T Consensus       250 ek~Ff~~-v----s~~KpniFIlnnkwDasas  276 (749)
T KOG0448|consen  250 EKQFFHK-V----SEEKPNIFILNNKWDASAS  276 (749)
T ss_pred             HHHHHHH-h----hccCCcEEEEechhhhhcc
Confidence            3332222 1    2235667788888898755

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.55  E-value=0.00016  Score=67.09  Aligned_cols=48  Identities=19%  Similarity=0.299  Sum_probs=35.0

Q ss_pred             hhhcCCcEEEEEeCCCcCCHH--HHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         185 SISSADAFILVYAIDDPNSFE--EIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       185 ~~~~AD~iIlVyDvsd~~Sfe--~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      .+.++|++++|+|+.++.+..  .+..++.   ..  ..++|+++|+||+|+.++
T Consensus         8 ~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~---~~--~~~k~~iivlNK~DL~~~   57 (141)
T cd01857           8 VVERSDIVVQIVDARNPLLFRPPDLERYVK---EV--DPRKKNILLLNKADLLTE   57 (141)
T ss_pred             HHhhCCEEEEEEEccCCcccCCHHHHHHHH---hc--cCCCcEEEEEechhcCCH
Confidence            478899999999999876644  3333332   22  146899999999999654

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=97.53  E-value=0.00061  Score=72.45  Aligned_cols=58  Identities=22%  Similarity=0.220  Sum_probs=37.1

Q ss_pred             cchhHH--HHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccc
Q psy1524         176 NEFPAM--RALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADEN  238 (592)
Q Consensus       176 e~~~~l--~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~  238 (592)
                      |.|...  +-..-...|-.++|+-++|.-+--. +..+-.+    ..-+.|+|+|.+|+|+.+++
T Consensus       212 EpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~----~a~~lPviVvvTK~D~~~dd  271 (527)
T COG5258         212 EPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIA----LAMELPVIVVVTKIDMVPDD  271 (527)
T ss_pred             cHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhh----hhhcCCEEEEEEecccCcHH
Confidence            665433  3334467899999999988654211 1111212    22478999999999998764

>PRK13796 GTPase YqeH; Provisional

Probab=97.53  E-value=0.00032  Score=75.72  Aligned_cols=93  Identities=19%  Similarity=0.212  Sum_probs=60.2

Q ss_pred             cchhHHHHHhhhcCC-cEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCC
Q psy1524         176 NEFPAMRALSISSAD-AFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSG  254 (592)
Q Consensus       176 e~~~~l~~~~~~~AD-~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~  254 (592)
                      +.|..+.... ..+| +|++|+|+.|..     ..|...+.+..  .+.|+++|+||+||...                 
T Consensus        57 ~~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~--~~kpviLViNK~DLl~~-----------------  111 (365)
T PRK13796         57 DDFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFV--GNNPVLLVGNKADLLPK-----------------  111 (365)
T ss_pred             HHHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHh--CCCCEEEEEEchhhCCC-----------------
Confidence            4455544443 4445 999999998743     23445555532  36799999999999743                 


Q ss_pred             CCCccccccCCCCCCCCChHHHHHH----HhhcCCC---eEEEcccCCCccHHHHHHHHHHH
Q psy1524         255 LPDSVCAHQISGTPDQVPYDTTESV----VQVDWEN---GFVEASAKDNTNITQVFKELLVQ  309 (592)
Q Consensus       255 ~~~~~~~~~~~~~~r~Vs~ee~~~l----a~~~~~~---~~~EvSAktg~gVeeLf~~Li~~  309 (592)
                                     .+..+....+    ++ ..+.   .++.+||++|.|++++++.+.+.
T Consensus       112 ---------------~~~~~~i~~~l~~~~k-~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        112 ---------------SVKKNKVKNWLRQEAK-ELGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             ---------------ccCHHHHHHHHHHHHH-hcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence                           1122222222    22 2222   58999999999999999999765

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.51  E-value=0.00025  Score=66.74  Aligned_cols=56  Identities=30%  Similarity=0.402  Sum_probs=38.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      ....+|+++|.+|||||||+|.+.+...  ......|+.+...  +.++ .  .+.++||||.
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~-~--~~~liDtPG~  155 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD-N--KIKLLDTPGI  155 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec-C--CEEEEECCCC
Confidence            3468899999999999999999997643  2334455544332  2233 2  3556999995

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0447|consensus

Probab=97.51  E-value=0.001  Score=73.17  Aligned_cols=63  Identities=17%  Similarity=0.187  Sum_probs=43.4

Q ss_pred             cccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       172 ~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      ..+-+....|...|..+.++||+|+--.   |.+.-......|...........|+|++|.|+.+.
T Consensus       432 ~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEk  494 (980)
T KOG0447|consen  432 PDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEK  494 (980)
T ss_pred             ccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence            4445667788889999999999998532   22222233333444445567889999999999876

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.48  E-value=0.00047  Score=71.48  Aligned_cols=89  Identities=21%  Similarity=0.152  Sum_probs=58.7

Q ss_pred             HHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccc
Q psy1524         183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAH  262 (592)
Q Consensus       183 ~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~  262 (592)
                      ...+..||++|+|+|+.++.+..+.  .+..+.     .+.|+|+|.||+|+.+..                        
T Consensus        16 ~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l-----~~kp~IiVlNK~DL~~~~------------------------   64 (276)
T TIGR03596        16 KEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR-----GNKPRLIVLNKADLADPA------------------------   64 (276)
T ss_pred             HHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH-----CCCCEEEEEEccccCCHH------------------------
Confidence            4458899999999999877553321  111111     257999999999986430                        


Q ss_pred             cCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHHHH
Q psy1524         263 QISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKV  312 (592)
Q Consensus       263 ~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~  312 (592)
                             ..  .......+ .....++.+||+++.|++++.+.+.+.+..
T Consensus        65 -------~~--~~~~~~~~-~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        65 -------VT--KQWLKYFE-EKGIKALAINAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             -------HH--HHHHHHHH-HcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence                   00  11111112 123468999999999999999988877643

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=97.45  E-value=0.0022  Score=64.60  Aligned_cols=61  Identities=21%  Similarity=0.273  Sum_probs=41.3

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC--CCC--CCccCceeeeEEEEEeeC-CeEEEEEEEeCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFS--PKYKRTIEEMHHEDFSMN-GVHLKLDILDTSGE  120 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~--~~~~~Tt~d~~~~~v~vd-g~~v~L~I~DT~G~  120 (592)
                      ....-|+|+|++++|||+|+|+|++.  .|.  ....++|.........+. +....+.++||+|.
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~   70 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGT   70 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCc
Confidence            34567899999999999999999988  664  333455543333322221 23345667999998

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=97.42  E-value=0.0005  Score=84.56  Aligned_cols=48  Identities=19%  Similarity=0.249  Sum_probs=33.8

Q ss_pred             cCCcEEEEEeCCCcCC--H-------HHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524         188 SADAFILVYAIDDPNS--F-------EEIRLIRDHIFETKASTAVPIVVVGNKSDLAD  236 (592)
Q Consensus       188 ~AD~iIlVyDvsd~~S--f-------e~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~  236 (592)
                      -.|+||+++|+.+--.  -       ..+...+.++.+. ..-..||.||.||||+..
T Consensus       201 plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       201 PLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             CCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence            4899999999876422  2       2334445555554 356899999999999883

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK01889 GTPase RsgA; Reviewed

Probab=97.38  E-value=0.00071  Score=72.80  Aligned_cols=84  Identities=17%  Similarity=0.191  Sum_probs=58.9

Q ss_pred             hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524         186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS  265 (592)
Q Consensus       186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  265 (592)
                      ..++|.+++|+++...-+...+..++..+..    .+++.+||+||+||.++.                           
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~~---------------------------  158 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCEDA---------------------------  158 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCCH---------------------------
Confidence            6789999999999755555556655554444    367889999999997530                           


Q ss_pred             CCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHH
Q psy1524         266 GTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELL  307 (592)
Q Consensus       266 ~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li  307 (592)
                             .+....+.....+.+++.+||++|.|+++|...+-
T Consensus       159 -------~~~~~~~~~~~~g~~Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        159 -------EEKIAEVEALAPGVPVLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             -------HHHHHHHHHhCCCCcEEEEECCCCccHHHHHHHhh
Confidence                   01122233323466789999999999999887763

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.37  E-value=0.0002  Score=68.46  Aligned_cols=22  Identities=41%  Similarity=0.619  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|.+|||||||+|.|...
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~   58 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPE   58 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            7899999999999999999976

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=97.33  E-value=0.0015  Score=67.46  Aligned_cols=113  Identities=23%  Similarity=0.306  Sum_probs=71.9

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC----------CCC------CCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN----------TFS------PKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQS  122 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~----------~f~------~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~  122 (592)
                      ...++|..||--+-|||||..+++.-          .|.      +.....+. ......+...+.+|-.  +|+||+  
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyah--VDcPGH--   85 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAH--VDCPGH--   85 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEe--ccCCCh--
Confidence            56789999999999999999888731          111      11111111 3334445556777766  999999  


Q ss_pred             CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc-
Q psy1524         123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP-  201 (592)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~-  201 (592)
                                                                           ..|-.-.-.-....|+.|+|+.++|. 
T Consensus        86 -----------------------------------------------------aDYvKNMItgAaqmDgAILVVsA~dGp  112 (394)
T COG0050          86 -----------------------------------------------------ADYVKNMITGAAQMDGAILVVAATDGP  112 (394)
T ss_pred             -----------------------------------------------------HHHHHHHhhhHHhcCccEEEEEcCCCC
Confidence                                                                 22222222224568999999999984 


Q ss_pred             --CCHHHHHHHHHHHHHhhcCCCC-CEEEEEeCCCCccc
Q psy1524         202 --NSFEEIRLIRDHIFETKASTAV-PIVVVGNKSDLADE  237 (592)
Q Consensus       202 --~Sfe~l~~~l~~L~~~~~~~~~-PIILVgNK~DL~~~  237 (592)
                        .+.+++-     |.++   -.. -||++.||+|+.++
T Consensus       113 mPqTrEHiL-----larq---vGvp~ivvflnK~Dmvdd  143 (394)
T COG0050         113 MPQTREHIL-----LARQ---VGVPYIVVFLNKVDMVDD  143 (394)
T ss_pred             CCcchhhhh-----hhhh---cCCcEEEEEEecccccCc
Confidence              4555442     2232   244 57888999999986

>PRK12288 GTPase RsgA; Reviewed

Probab=97.31  E-value=0.00033  Score=75.09  Aligned_cols=23  Identities=35%  Similarity=0.522  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNT   86 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~   86 (592)
                      .++|+|.+|||||||||+|++..
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~  229 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEA  229 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhcccc
Confidence            37899999999999999999663

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.23  E-value=0.0014  Score=68.32  Aligned_cols=89  Identities=22%  Similarity=0.186  Sum_probs=58.7

Q ss_pred             HHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccc
Q psy1524         183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAH  262 (592)
Q Consensus       183 ~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~  262 (592)
                      ...+..||++|+|+|+.++.+.+..  .+..+.     .+.|+++|.||+|+.+..                        
T Consensus        19 ~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~-----~~kp~iiVlNK~DL~~~~------------------------   67 (287)
T PRK09563         19 KENLKLVDVVIEVLDARIPLSSENP--MIDKII-----GNKPRLLILNKSDLADPE------------------------   67 (287)
T ss_pred             HHHhhhCCEEEEEEECCCCCCCCCh--hHHHHh-----CCCCEEEEEEchhcCCHH------------------------
Confidence            4458899999999999877553321  111111     267999999999986430                        


Q ss_pred             cCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHHHH
Q psy1524         263 QISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKV  312 (592)
Q Consensus       263 ~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~  312 (592)
                             .  .+....+.+ .....++.+||+++.|++++.+.+...+..
T Consensus        68 -------~--~~~~~~~~~-~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         68 -------V--TKKWIEYFE-EQGIKALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             -------H--HHHHHHHHH-HcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence                   0  011111111 123568899999999999999988877644

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=97.22  E-value=0.00074  Score=68.89  Aligned_cols=22  Identities=36%  Similarity=0.386  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|.+|||||||+|+|.+.
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~  143 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPS  143 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhh
Confidence            7899999999999999999965

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK12289 GTPase RsgA; Reviewed

Probab=97.21  E-value=0.00049  Score=73.88  Aligned_cols=52  Identities=33%  Similarity=0.316  Sum_probs=33.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC--CCccC-------ceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFS--PKYKR-------TIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~--~~~~~-------Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      .++|+|.+|||||||||+|+.....  .....       ||..  ...+.+.+..   .|+||||+
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~--~~l~~l~~g~---~liDTPG~  234 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRH--VELFELPNGG---LLADTPGF  234 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCce--eEEEECCCCc---EEEeCCCc
Confidence            3899999999999999999965322  11112       3322  2333443222   35999999

>PRK13796 GTPase YqeH; Provisional

Probab=97.17  E-value=0.0005  Score=74.18  Aligned_cols=53  Identities=25%  Similarity=0.411  Sum_probs=36.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC------C-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNT------F-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~------f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      .++.|||.+|||||||||+|....      . ......||.+..  .+.+++.   ..++||||.
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~--~~~l~~~---~~l~DTPGi  220 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI--EIPLDDG---SFLYDTPGI  220 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeE--EEEcCCC---cEEEECCCc
Confidence            479999999999999999998532      1 234455554433  2333332   246999998

>KOG1424|consensus

Probab=97.16  E-value=0.00063  Score=74.75  Aligned_cols=56  Identities=23%  Similarity=0.233  Sum_probs=39.1

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      ..+.|.+||+|||||||+||.|++.+.+.. ..|-+ .-+..++.+..   .+.++|+||.
T Consensus       313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  313 DVVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             ceeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCC---CceecCCCCc
Confidence            379999999999999999999998876532 22222 22334444443   2344999998

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.12  E-value=0.02  Score=54.73  Aligned_cols=56  Identities=16%  Similarity=0.315  Sum_probs=43.6

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTS  118 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~  118 (592)
                      ..+||.|.|.||||||||+.++...--..  ..+++-+++..+.-+++.+-+.|+|+.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~--g~kvgGf~t~EVR~gGkR~GF~Ivdl~   59 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREK--GYKVGGFITPEVREGGKRIGFKIVDLA   59 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhc--CceeeeEEeeeeecCCeEeeeEEEEcc
Confidence            45899999999999999999988432211  134556777777888999999999987

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.09  E-value=0.00054  Score=73.79  Aligned_cols=53  Identities=26%  Similarity=0.434  Sum_probs=36.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC-------CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTF-------SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f-------~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      .+|+|+|.+|||||||+|+|++...       ...+..||.+..  .+.+++.   +.++||||.
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~~~---~~l~DtPG~  214 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLDDG---HSLYDTPGI  214 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeCCC---CEEEECCCC
Confidence            4899999999999999999996422       234445554332  2333322   346999999

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG3859|consensus

Probab=97.08  E-value=0.0009  Score=68.48  Aligned_cols=62  Identities=21%  Similarity=0.397  Sum_probs=46.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCcc----Ccee-eeEEEEEeeCCeEEEEEEEeCCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYK----RTIE-EMHHEDFSMNGVHLKLDILDTSGEQ  121 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~----~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~  121 (592)
                      -..++|+.||.+|.||||||..|.+..|.....    +++. ...+..+.-.+..++|.|+||.|++
T Consensus        40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfG  106 (406)
T KOG3859|consen   40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFG  106 (406)
T ss_pred             CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccc
Confidence            567999999999999999999999888864332    3332 2223333446788999999999994

>cd03112 CobW_like The function of this protein family is unkown

Probab=96.98  E-value=0.0028  Score=60.18  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -++++|..|+|||||+++++..
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            3679999999999999999865

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>COG1162 Predicted GTPases [General function prediction only]

Probab=96.97  E-value=0.0017  Score=67.75  Aligned_cols=53  Identities=36%  Similarity=0.488  Sum_probs=33.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC------CCCCCc---cCceeeeEEEEEeeCCeEEEEEEEeCCCCC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN------TFSPKY---KRTIEEMHHEDFSMNGVHLKLDILDTSGEQ  121 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~------~f~~~~---~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~  121 (592)
                      ..+++|.+|||||||+|+|...      .+.+..   ..||  .....+.+++.-   .|+||||++
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTT--t~~~l~~l~~gG---~iiDTPGf~  227 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTT--THVELFPLPGGG---WIIDTPGFR  227 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCcc--ceEEEEEcCCCC---EEEeCCCCC
Confidence            6789999999999999999954      111111   1222  234445553222   249999993

>KOG1143|consensus

Probab=96.96  E-value=0.0011  Score=70.26  Aligned_cols=103  Identities=17%  Similarity=0.070  Sum_probs=54.3

Q ss_pred             CCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCC
Q psy1524         189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTP  268 (592)
Q Consensus       189 AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  268 (592)
                      -|..++|+++........ +..+-.+..    -++|+.++.+|+|+.+... +    +.....+..+....  .-..-..
T Consensus       275 Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A----L~iPfFvlvtK~Dl~~~~~-~----~~tv~~l~nll~~~--Gc~kvp~  342 (591)
T KOG1143|consen  275 PHFACLVVSADRGITWTT-REHLGLIAA----LNIPFFVLVTKMDLVDRQG-L----KKTVKDLSNLLAKA--GCTKVPK  342 (591)
T ss_pred             CceEEEEEEcCCCCcccc-HHHHHHHHH----hCCCeEEEEEeeccccchh-H----HHHHHHHHHHHhhc--Cccccce
Confidence            578888888876543211 122222322    3799999999999997610 0    11111111111100  0011112


Q ss_pred             CCCChHHHHHHHh---hcCCCeEEEcccCCCccHHHHH
Q psy1524         269 DQVPYDTTESVVQ---VDWENGFVEASAKDNTNITQVF  303 (592)
Q Consensus       269 r~Vs~ee~~~la~---~~~~~~~~EvSAktg~gVeeLf  303 (592)
                      +..+.+++...++   .....++|-+|+.+|+|++-+-
T Consensus       343 ~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~  380 (591)
T KOG1143|consen  343 RVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR  380 (591)
T ss_pred             EeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence            2333444443332   2456689999999999987553

>KOG0467|consensus

Probab=96.89  E-value=0.0047  Score=70.64  Aligned_cols=115  Identities=12%  Similarity=0.202  Sum_probs=74.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC--CCCCCccCcee------eeEEE-------EEeeCCeEEEEEEEeCCCCCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPKYKRTIE------EMHHE-------DFSMNGVHLKLDILDTSGEQSGK  124 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~~~~Tt~------d~~~~-------~v~vdg~~v~L~I~DT~G~~~~~  124 (592)
                      ...-+|+++-.-.-|||||...|+..  .+......++.      |-.++       .+..--+.+.++++|+||+    
T Consensus         7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspgh----   82 (887)
T KOG0467|consen    7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGH----   82 (887)
T ss_pred             CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCc----
Confidence            44568999999999999999999832  22222222221      11111       1222235578899999999    


Q ss_pred             cccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCH
Q psy1524         125 GLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSF  204 (592)
Q Consensus       125 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sf  204 (592)
                                                                         -.|.+......+-+|++++++|+...-.-
T Consensus        83 ---------------------------------------------------vdf~sevssas~l~d~alvlvdvvegv~~  111 (887)
T KOG0467|consen   83 ---------------------------------------------------VDFSSEVSSASRLSDGALVLVDVVEGVCS  111 (887)
T ss_pred             ---------------------------------------------------cchhhhhhhhhhhcCCcEEEEeeccccch
Confidence                                                               56677777777889999999999765433


Q ss_pred             HHHHHHHHHHHHhhcCCCCCEEEEEeCCCC
Q psy1524         205 EEIRLIRDHIFETKASTAVPIVVVGNKSDL  234 (592)
Q Consensus       205 e~l~~~l~~L~~~~~~~~~PIILVgNK~DL  234 (592)
                      .....    ++. .-..+...++|.||+|.
T Consensus       112 qt~~v----lrq-~~~~~~~~~lvinkidr  136 (887)
T KOG0467|consen  112 QTYAV----LRQ-AWIEGLKPILVINKIDR  136 (887)
T ss_pred             hHHHH----HHH-HHHccCceEEEEehhhh
Confidence            22221    211 12346778999999993

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.81  E-value=0.0058  Score=63.39  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=19.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHH
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~   83 (592)
                      .-.|+|+|.+||||||++..|.
T Consensus        72 ~~vi~l~G~~G~GKTTt~akLA   93 (272)
T TIGR00064        72 PNVILFVGVNGVGKTTTIAKLA   93 (272)
T ss_pred             CeEEEEECCCCCcHHHHHHHHH
Confidence            4578889999999999998887

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=96.80  E-value=0.0056  Score=67.83  Aligned_cols=117  Identities=19%  Similarity=0.247  Sum_probs=71.5

Q ss_pred             CCCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524          55 SSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG  134 (592)
Q Consensus        55 ~~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~  134 (592)
                      .....+..+-|+|+|++|+||||||..|+..--    ..|+.+..--...+.++.-.++|..++..              
T Consensus        62 tp~d~PPPfIvavvGPpGtGKsTLirSlVrr~t----k~ti~~i~GPiTvvsgK~RRiTflEcp~D--------------  123 (1077)
T COG5192          62 TPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFT----KQTIDEIRGPITVVSGKTRRITFLECPSD--------------  123 (1077)
T ss_pred             CcccCCCCeEEEeecCCCCChhHHHHHHHHHHH----HhhhhccCCceEEeecceeEEEEEeChHH--------------
Confidence            344556778999999999999999999884311    11222222122245677777888888743              


Q ss_pred             CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524         135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI  214 (592)
Q Consensus       135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L  214 (592)
                                                                 ...|.+ ..+-||.+|+++|..-.-..+.+. ++..+
T Consensus       124 -------------------------------------------l~~miD-vaKIaDLVlLlIdgnfGfEMETmE-FLnil  158 (1077)
T COG5192         124 -------------------------------------------LHQMID-VAKIADLVLLLIDGNFGFEMETME-FLNIL  158 (1077)
T ss_pred             -------------------------------------------HHHHHh-HHHhhheeEEEeccccCceehHHH-HHHHH
Confidence                                                       112222 245689999999976443223222 23333


Q ss_pred             HHhhcCCCCCEEEEEeCCCCccc
Q psy1524         215 FETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       215 ~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      ..+ +  -..++-|++..||...
T Consensus       159 ~~H-G--mPrvlgV~ThlDlfk~  178 (1077)
T COG5192         159 ISH-G--MPRVLGVVTHLDLFKN  178 (1077)
T ss_pred             hhc-C--CCceEEEEeecccccC
Confidence            332 2  2347789999999865

>cd01854 YjeQ_engC YjeQ/EngC

Probab=96.79  E-value=0.0011  Score=69.16  Aligned_cols=24  Identities=33%  Similarity=0.549  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNT   86 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~   86 (592)
                      -.++++|.+|||||||+|.|++..
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~  185 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDL  185 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchh
Confidence            479999999999999999999653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.79  E-value=0.0075  Score=64.00  Aligned_cols=24  Identities=25%  Similarity=0.391  Sum_probs=20.7

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..-.|+|+|++||||||++..+..
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~  136 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAH  136 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            346888999999999999998874

>PRK14974 cell division protein FtsY; Provisional

Probab=96.69  E-value=0.0053  Score=65.59  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=19.9

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHH
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~   83 (592)
                      ....|+|+|.+||||||++..+.
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA  161 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLA  161 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Confidence            35789999999999999887776

>PRK00098 GTPase RsgA; Reviewed

Probab=96.62  E-value=0.0034  Score=65.86  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNT   86 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~   86 (592)
                      ..++|+|.+|||||||+|.|++..
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCc
Confidence            368999999999999999999653

>PRK13695 putative NTPase; Provisional

Probab=96.57  E-value=0.02  Score=54.92  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      +||+|+|.+|+|||||+..+.+.
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~   23 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAEL   23 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999987643

>KOG3887|consensus

Probab=96.50  E-value=0.0083  Score=60.53  Aligned_cols=170  Identities=18%  Similarity=0.248  Sum_probs=94.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEE--EEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHE--DFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~--~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      .+|+++|-.-+||||+..-.... ..++  .|.- +...+  .-.+.+.-+.+++||.||+-.-                
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhk-MsPn--eTlflESTski~~d~is~sfinf~v~dfPGQ~~~----------------   88 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTSKITRDHISNSFINFQVWDFPGQMDF----------------   88 (347)
T ss_pred             ceEEEEeecccCcchhhheeeec-cCCC--ceeEeeccCcccHhhhhhhhcceEEeecCCcccc----------------
Confidence            56999999999999987543322 1111  1110 00000  0122345578999999999110                


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH-hh
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE-TK  218 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~-~~  218 (592)
                                                    +.    ..|.  ....++++-++|+|+|+.+.. .+.+..+...+.+ +.
T Consensus        89 ------------------------------Fd----~s~D--~e~iF~~~gALifvIDaQddy-~eala~L~~~v~rayk  131 (347)
T KOG3887|consen   89 ------------------------------FD----PSFD--YEMIFRGVGALIFVIDAQDDY-MEALARLHMTVERAYK  131 (347)
T ss_pred             ------------------------------CC----CccC--HHHHHhccCeEEEEEechHHH-HHHHHHHHHHhhheee
Confidence                                          00    0111  123478899999999987532 3334443333332 22


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh---cCCCeEEEcccCC
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV---DWENGFVEASAKD  295 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~---~~~~~~~EvSAkt  295 (592)
                      -++++.+=+...|.|-..++..++                        ++|.+-......++..   .....|+-+|-..
T Consensus       132 vNp~in~EVfiHKvDGLsdd~kie------------------------tqrdI~qr~~d~l~d~gle~v~vsf~LTSIyD  187 (347)
T KOG3887|consen  132 VNPNINFEVFIHKVDGLSDDFKIE------------------------TQRDIHQRTNDELADAGLEKVQVSFYLTSIYD  187 (347)
T ss_pred             cCCCceEEEEEEeccCCchhhhhh------------------------hHHHHHHHhhHHHHhhhhccceEEEEEeeecc
Confidence            457788889999999776533221                        1222222222233322   2234577777654


Q ss_pred             CccHHHHHHHHHHHHHHh
Q psy1524         296 NTNITQVFKELLVQAKVK  313 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~~~  313 (592)
                       ..|-|+|..+++.+..+
T Consensus       188 -HSIfEAFSkvVQkLipq  204 (347)
T KOG3887|consen  188 -HSIFEAFSKVVQKLIPQ  204 (347)
T ss_pred             -hHHHHHHHHHHHHHhhh
Confidence             67888898888887543

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=96.39  E-value=0.016  Score=62.97  Aligned_cols=117  Identities=21%  Similarity=0.247  Sum_probs=67.1

Q ss_pred             HHHHHhhhcCCcEEEEEeCCCc----------CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCC-c
Q psy1524         180 AMRALSISSADAFILVYAIDDP----------NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGP-F  248 (592)
Q Consensus       180 ~l~~~~~~~AD~iIlVyDvsd~----------~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~-~  248 (592)
                      .-|..++.++++||||+++++-          ..+.+.-.++..+.....-.+.|+||++||+|+....    +..+. +
T Consensus       251 kKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~K----l~~~~~l  326 (389)
T PF00503_consen  251 KKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEK----LKKGPKL  326 (389)
T ss_dssp             GGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHH----TTTSSCG
T ss_pred             hhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHH----ccCCCch
Confidence            3445568899999999998642          1244444455555554334578999999999998651    11111 2


Q ss_pred             ccccCCCCCccccccCCCCCCCCChHHHHHHHhh-----c------CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         249 QTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV-----D------WENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       249 ~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~-----~------~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      ..++.+...          ...-..+.+..+...     .      ..+-+..|+|..-.+|..+|..+.+.|
T Consensus       327 ~~~fp~y~g----------~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  327 SKYFPDYTG----------DRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             GGTSTTGGS----------H-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HhhCCCCCC----------CcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            233322210          001233444433321     1      222356899999999999999887654

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG0466|consensus

Probab=96.33  E-value=0.0061  Score=63.28  Aligned_cols=86  Identities=22%  Similarity=0.280  Sum_probs=55.6

Q ss_pred             CCcEEEEEeCCC----cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccC
Q psy1524         189 ADAFILVYAIDD----PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQI  264 (592)
Q Consensus       189 AD~iIlVyDvsd----~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  264 (592)
                      .|++++++..+.    +.+-+++...  ++-.     -..++++-||+||...+..                        
T Consensus       149 mDaalLlIA~NEsCPQPQTsEHLaav--eiM~-----LkhiiilQNKiDli~e~~A------------------------  197 (466)
T KOG0466|consen  149 MDAALLLIAGNESCPQPQTSEHLAAV--EIMK-----LKHIIILQNKIDLIKESQA------------------------  197 (466)
T ss_pred             hhhhhhhhhcCCCCCCCchhhHHHHH--HHhh-----hceEEEEechhhhhhHHHH------------------------
Confidence            467777776543    3444554331  1111     2468999999999876321                        


Q ss_pred             CCCCCCCChHHHHHHHhhc--CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         265 SGTPDQVPYDTTESVVQVD--WENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       265 ~~~~r~Vs~ee~~~la~~~--~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                           .-..++++.|.+..  .+.+++++||.-++||+-+.+.+++.+
T Consensus       198 -----~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI  240 (466)
T KOG0466|consen  198 -----LEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI  240 (466)
T ss_pred             -----HHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence                 11234444554422  356899999999999999999999887

>KOG2484|consensus

Probab=96.33  E-value=0.003  Score=67.66  Aligned_cols=57  Identities=25%  Similarity=0.385  Sum_probs=40.0

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCC-ccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPK-YKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~-~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      ...++|.|+|.+||||||+||+|.....+.. ..|++. ..-+.+.+|.   .+.|+|.||.
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT-~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVT-RSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccch-hhhhheeccC---CceeccCCce
Confidence            5679999999999999999999998876532 223332 2223344443   3555999998

>KOG4273|consensus

Probab=96.30  E-value=0.012  Score=59.65  Aligned_cols=46  Identities=17%  Similarity=0.323  Sum_probs=33.4

Q ss_pred             CCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       189 AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      ..++++|||.+....+..++.|+..-.-  . .--..+.+|||.|....
T Consensus        79 l~a~vmvfdlse~s~l~alqdwl~htdi--n-sfdillcignkvdrvph  124 (418)
T KOG4273|consen   79 LQAFVMVFDLSEKSGLDALQDWLPHTDI--N-SFDILLCIGNKVDRVPH  124 (418)
T ss_pred             eeeEEEEEeccchhhhHHHHhhcccccc--c-cchhheecccccccccc
Confidence            4689999999999999999998763211  1 11245778999997653

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=96.21  E-value=0.018  Score=63.46  Aligned_cols=22  Identities=14%  Similarity=0.329  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHH
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~   83 (592)
                      ...|+++|.+||||||++..|.
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA  121 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLA  121 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4678999999999999999987

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=96.16  E-value=0.015  Score=46.04  Aligned_cols=43  Identities=30%  Similarity=0.318  Sum_probs=29.8

Q ss_pred             CCcEEEEEeCCCc--CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCC
Q psy1524         189 ADAFILVYAIDDP--NSFEEIRLIRDHIFETKASTAVPIVVVGNKSD  233 (592)
Q Consensus       189 AD~iIlVyDvsd~--~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~D  233 (592)
                      ++++++++|+|..  .|.++-..++.+++...  .+.|+++|.||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence            6899999999875  56777777888888763  4899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.10  E-value=0.017  Score=62.47  Aligned_cols=24  Identities=21%  Similarity=0.307  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .-.|+|+|++||||||++.+|...
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~  160 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAAR  160 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            357889999999999999999853

>cd03114 ArgK-like The function of this protein family is unkown

Probab=96.08  E-value=0.022  Score=53.69  Aligned_cols=20  Identities=30%  Similarity=0.587  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q psy1524          65 VVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~   84 (592)
                      |.++|.+|||||||+..+..
T Consensus         2 i~~~G~~GsGKTt~~~~l~~   21 (148)
T cd03114           2 IGITGVPGAGKSTLIDALIT   21 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999998874

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.04  E-value=0.03  Score=63.01  Aligned_cols=23  Identities=17%  Similarity=0.346  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .-.|+|+|++||||||++..|..
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45889999999999999998874

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.00  E-value=0.035  Score=46.33  Aligned_cols=20  Identities=30%  Similarity=0.474  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q psy1524          65 VVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~   84 (592)
                      |++.|..|+||||+...+..
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~   21 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAA   21 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999988873

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=95.85  E-value=0.029  Score=60.82  Aligned_cols=26  Identities=15%  Similarity=0.381  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTF   87 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f   87 (592)
                      .=.|++||++||||||-+..|.....
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~  228 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYV  228 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence            45789999999999999998885543

>KOG2485|consensus

Probab=95.77  E-value=0.016  Score=60.51  Aligned_cols=59  Identities=25%  Similarity=0.367  Sum_probs=36.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCcc------CceeeeEEEEEee-CCeEEEEEEEeCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYK------RTIEEMHHEDFSM-NGVHLKLDILDTSGE  120 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~------~Tt~d~~~~~v~v-dg~~v~L~I~DT~G~  120 (592)
                      ...+.|.|+|-||||||||+|.+..........      +.+.......+.+ +...  +.+.||||.
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~--vy~iDTPGi  206 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPP--VYLIDTPGI  206 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCc--eEEecCCCc
Confidence            467899999999999999999888543322111      2221112222333 3333  445999998

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=95.73  E-value=0.16  Score=53.98  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCC
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYNTF   87 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~~f   87 (592)
                      .+|-|.=|+|||||+|+++.+.-
T Consensus         4 tvitGFLGsGKTTlL~~lL~~~~   26 (323)
T COG0523           4 TVITGFLGSGKTTLLNHLLANRD   26 (323)
T ss_pred             EEEeecCCCCHHHHHHHHHhccC
Confidence            56789999999999999996533

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=95.69  E-value=0.057  Score=48.05  Aligned_cols=24  Identities=17%  Similarity=0.430  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNT   86 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~   86 (592)
                      .-++|+|++|+|||+|++.+....
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            369999999999999999998553

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>KOG0463|consensus

Probab=95.69  E-value=0.026  Score=60.09  Aligned_cols=29  Identities=21%  Similarity=0.328  Sum_probs=23.5

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTF   87 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f   87 (592)
                      .-..++|++||.-.+|||||+--|+.+..
T Consensus       130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeL  158 (641)
T KOG0463|consen  130 DFIEARVAVVGNVDAGKSTLLGVLTHGEL  158 (641)
T ss_pred             cceeEEEEEEecccCCcceeEeeeeeccc
Confidence            33568999999999999999977775543

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=95.63  E-value=0.052  Score=59.20  Aligned_cols=60  Identities=25%  Similarity=0.382  Sum_probs=40.3

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCC---------------------CCccCcee-eeE---EEEEee-CCeEEEEEE
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFS---------------------PKYKRTIE-EMH---HEDFSM-NGVHLKLDI  114 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~---------------------~~~~~Tt~-d~~---~~~v~v-dg~~v~L~I  114 (592)
                      -.+=|.+||+--+||||||.||..--..                     .....|++ .+.   -..+.+ ++..+.+.+
T Consensus        16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL   95 (492)
T PF09547_consen   16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL   95 (492)
T ss_pred             CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence            3578999999999999999999853111                     11222333 111   112333 678899999


Q ss_pred             EeCCCC
Q psy1524         115 LDTSGE  120 (592)
Q Consensus       115 ~DT~G~  120 (592)
                      +|+.|.
T Consensus        96 iDCVGy  101 (492)
T PF09547_consen   96 IDCVGY  101 (492)
T ss_pred             Eeecce
Confidence            999997

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>COG1162 Predicted GTPases [General function prediction only]

Probab=95.55  E-value=0.059  Score=56.46  Aligned_cols=90  Identities=20%  Similarity=0.209  Sum_probs=60.9

Q ss_pred             hhcCCcEEEEEeCCCcC-CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccC
Q psy1524         186 ISSADAFILVYAIDDPN-SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQI  264 (592)
Q Consensus       186 ~~~AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  264 (592)
                      +.++|-+|+|+.+.+++ +...+..++-.+ +   ..++.-|||+||+||.++..                         
T Consensus        77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a-e---~~gi~pvIvlnK~DL~~~~~-------------------------  127 (301)
T COG1162          77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLA-E---AGGIEPVIVLNKIDLLDDEE-------------------------  127 (301)
T ss_pred             ccccceEEEEEeccCCCCCHHHHHHHHHHH-H---HcCCcEEEEEEccccCcchH-------------------------
Confidence            55688889999998886 444444444333 2   24677788899999997621                         


Q ss_pred             CCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524         265 SGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAK  311 (592)
Q Consensus       265 ~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~  311 (592)
                            ...++...... ..+.+.+.+||+++.+++++...+...+.
T Consensus       128 ------~~~~~~~~~y~-~~gy~v~~~s~~~~~~~~~l~~~l~~~~s  167 (301)
T COG1162         128 ------AAVKELLREYE-DIGYPVLFVSAKNGDGLEELAELLAGKIT  167 (301)
T ss_pred             ------HHHHHHHHHHH-hCCeeEEEecCcCcccHHHHHHHhcCCeE
Confidence                  11022222333 46778999999999999999888766543

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.44  E-value=0.029  Score=61.13  Aligned_cols=23  Identities=17%  Similarity=0.517  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...|+|+|++||||||++..|..
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~  263 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAW  263 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHH
Confidence            35899999999999999999973

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=95.38  E-value=0.07  Score=50.84  Aligned_cols=21  Identities=19%  Similarity=0.398  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      -++++|.+|+||||++..+..
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~   22 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLAL   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999888763

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=95.37  E-value=0.076  Score=55.72  Aligned_cols=51  Identities=16%  Similarity=0.139  Sum_probs=36.8

Q ss_pred             HHHHhhhcCCcEEEEEeCCC---cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeC
Q psy1524         181 MRALSISSADAFILVYAIDD---PNSFEEIRLIRDHIFETKASTAVPIVVVGNK  231 (592)
Q Consensus       181 l~~~~~~~AD~iIlVyDvsd---~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK  231 (592)
                      .....++...+=++|+|=-.   ..+..+....++.|+.....-++|+|.||++
T Consensus       136 ~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~  189 (302)
T PF05621_consen  136 QVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR  189 (302)
T ss_pred             HHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence            33456788889999999322   2455666667777777766678999999975

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=95.31  E-value=0.23  Score=52.71  Aligned_cols=22  Identities=18%  Similarity=0.357  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -.+|.|.-|+|||||+|+++..
T Consensus         6 v~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          6 VTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            4678899999999999999954

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=95.31  E-value=0.015  Score=51.78  Aligned_cols=21  Identities=24%  Similarity=0.498  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+|.|.+||||||+++.|..
T Consensus         1 vI~I~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999985

...

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.27  E-value=0.039  Score=67.16  Aligned_cols=50  Identities=22%  Similarity=0.296  Sum_probs=33.0

Q ss_pred             hcCCcEEEEEeCCCcCCH--H-------HHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         187 SSADAFILVYAIDDPNSF--E-------EIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       187 ~~AD~iIlVyDvsd~~Sf--e-------~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      +-.|+||++.|+.+--+-  .       .+..-+.+|.+. -.-..|+.|++||.|+..-
T Consensus       213 ~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~G  271 (1188)
T COG3523         213 RPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLPG  271 (1188)
T ss_pred             CCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEeccccccc
Confidence            457999999998663221  1       122234444443 3457899999999999863

>KOG0460|consensus

Probab=95.19  E-value=0.098  Score=55.43  Aligned_cols=25  Identities=16%  Similarity=0.244  Sum_probs=21.8

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHH
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~   83 (592)
                      ....++|.-||--.-|||||-.+++
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAIT   75 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAIT   75 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHH
Confidence            3456899999999999999998877

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.17  E-value=0.058  Score=59.31  Aligned_cols=23  Identities=17%  Similarity=0.273  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .-+|+|||++||||||++..|.+
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~  213 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAA  213 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998875

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=95.05  E-value=0.093  Score=46.37  Aligned_cols=47  Identities=21%  Similarity=0.188  Sum_probs=32.8

Q ss_pred             HhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeC
Q psy1524         184 LSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK  231 (592)
Q Consensus       184 ~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK  231 (592)
                      ..+..+|.+|+|.+. +..++..+..+++.+.+........+.+|+|+
T Consensus        60 ~~l~~aD~vlvvv~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          60 AALDQADRVFLVTQQ-DLPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHcCeEEEEecC-ChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            356789999999975 45667777877777766532214567788885

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>KOG2423|consensus

Probab=94.97  E-value=0.011  Score=63.23  Aligned_cols=29  Identities=34%  Similarity=0.450  Sum_probs=26.2

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS   88 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~   88 (592)
                      ...+-|.+||++||||||+||.|.....+
T Consensus       305 kkqISVGfiGYPNvGKSSiINTLR~KkVC  333 (572)
T KOG2423|consen  305 KKQISVGFIGYPNVGKSSIINTLRKKKVC  333 (572)
T ss_pred             ccceeeeeecCCCCchHHHHHHHhhcccc
Confidence            45689999999999999999999988776

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=94.86  E-value=0.082  Score=58.53  Aligned_cols=23  Identities=13%  Similarity=0.329  Sum_probs=20.4

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHH
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~   83 (592)
                      ....|+|+|.+||||||++..|.
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA  116 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLA  116 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHH
Confidence            45689999999999999998887

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=94.80  E-value=0.059  Score=51.94  Aligned_cols=52  Identities=21%  Similarity=0.431  Sum_probs=36.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDT  117 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT  117 (592)
                      +|+|.|++|+|||||+++++..--..  .-.+.-+++..+.-++..+-+.+.|.
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~--~~~v~Gf~t~evr~~g~r~GF~iv~l   52 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK--GLPVGGFYTEEVRENGRRIGFDIVDL   52 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT--CGGEEEEEEEEEETTSSEEEEEEEET
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc--CCccceEEeecccCCCceEEEEEEEC
Confidence            68999999999999999988331110  11234466666666788888888888

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=94.67  E-value=0.12  Score=44.79  Aligned_cols=28  Identities=11%  Similarity=0.274  Sum_probs=20.3

Q ss_pred             HhhhcCCcEEEEEeCCCcCCHHHHHHHHH
Q psy1524         184 LSISSADAFILVYAIDDPNSFEEIRLIRD  212 (592)
Q Consensus       184 ~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~  212 (592)
                      ..+..+|.++++.+. +..++..+..+++
T Consensus        57 ~~l~~ad~viv~~~~-~~~s~~~~~~~~~   84 (104)
T cd02042          57 NALAAADLVLIPVQP-SPLDLDGLEKLLE   84 (104)
T ss_pred             HHHHHCCEEEEeccC-CHHHHHHHHHHHH
Confidence            456779999999986 4556666666655

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=94.59  E-value=0.12  Score=47.79  Aligned_cols=49  Identities=18%  Similarity=0.215  Sum_probs=34.3

Q ss_pred             HhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524         184 LSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA  235 (592)
Q Consensus       184 ~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~  235 (592)
                      ..+..+|.+++|.+.+ ..++..+...++.+.+.  ....++.+|.|+++-.
T Consensus        62 ~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~--~~~~~~~lVvN~~~~~  110 (139)
T cd02038          62 DFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQ--LRVLNFRVVVNRAESP  110 (139)
T ss_pred             HHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHh--cCCCCEEEEEeCCCCH
Confidence            3578899999999875 45566655666666543  2456788999999743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>KOG0085|consensus

Probab=94.56  E-value=0.024  Score=56.92  Aligned_cols=24  Identities=25%  Similarity=0.466  Sum_probs=21.3

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHH
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~   83 (592)
                      ...+|++++|...+||||+|.+..
T Consensus        37 rrelkllllgtgesgkstfikqmr   60 (359)
T KOG0085|consen   37 RRELKLLLLGTGESGKSTFIKQMR   60 (359)
T ss_pred             hhhheeeeecCCCcchhhHHHHHH
Confidence            467999999999999999998754

>PRK07261 topology modulation protein; Provisional

Probab=94.44  E-value=0.032  Score=53.71  Aligned_cols=21  Identities=24%  Similarity=0.475  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      +|+|+|.+|+|||||...+..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            799999999999999999874

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=94.44  E-value=0.031  Score=51.08  Aligned_cols=19  Identities=32%  Similarity=0.688  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q psy1524          65 VVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~   83 (592)
                      |+|+|.+|||||||+.+|.
T Consensus         2 ii~~G~pgsGKSt~a~~l~   20 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLA   20 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7899999999999999998

...

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=94.44  E-value=0.027  Score=53.27  Aligned_cols=22  Identities=32%  Similarity=0.771  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      ||+|+|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999844

>PRK08118 topology modulation protein; Reviewed

Probab=94.42  E-value=0.031  Score=53.60  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      ||+|+|++|||||||..+|...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            8999999999999999999844

>KOG1534|consensus

Probab=94.35  E-value=0.1  Score=52.01  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .+-+.++|+.|+||||+++.+..
T Consensus         3 ~ya~lV~GpAgSGKSTyC~~~~~   25 (273)
T KOG1534|consen    3 RYAQLVMGPAGSGKSTYCSSMYE   25 (273)
T ss_pred             ceeEEEEccCCCCcchHHHHHHH
Confidence            46788999999999999998873

>PRK14738 gmk guanylate kinase; Provisional

Probab=94.35  E-value=0.055  Score=53.62  Aligned_cols=27  Identities=26%  Similarity=0.350  Sum_probs=22.7

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .....-|+|+|++|||||||+++|...
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            345567889999999999999999854

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.26  E-value=0.033  Score=56.71  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -|+|+|++|||||||++-+.+-
T Consensus        31 fvsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988853

>KOG0464|consensus

Probab=94.24  E-value=0.021  Score=61.47  Aligned_cols=117  Identities=15%  Similarity=0.244  Sum_probs=79.0

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc--CCC-C---CCccCcee-----------eeEEEEEeeCCeEEEEEEEeCCCCCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY--NTF-S---PKYKRTIE-----------EMHHEDFSMNGVHLKLDILDTSGEQSG  123 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~--~~f-~---~~~~~Tt~-----------d~~~~~v~vdg~~v~L~I~DT~G~~~~  123 (592)
                      +.-+|.|+..-.+||||...|++.  +.. +   -+.-.|+.           ...+.-+.+|.+.+.++++||||+   
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpgh---  112 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGH---  112 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCc---
Confidence            345788999999999999999872  111 0   01111211           122334566777788889999999   


Q ss_pred             CcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCC
Q psy1524         124 KGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNS  203 (592)
Q Consensus       124 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~S  203 (592)
                                                                          -.|+--...+++--|+++.|||.+....
T Consensus       113 ----------------------------------------------------vdf~leverclrvldgavav~dasagve  140 (753)
T KOG0464|consen  113 ----------------------------------------------------VDFRLEVERCLRVLDGAVAVFDASAGVE  140 (753)
T ss_pred             ----------------------------------------------------ceEEEEHHHHHHHhcCeEEEEeccCCcc
Confidence                                                                3444445556777899999999987655


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         204 FEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       204 fe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      -..+..|.+     ....++|-+...||+|....
T Consensus       141 ~qtltvwrq-----adk~~ip~~~finkmdk~~a  169 (753)
T KOG0464|consen  141 AQTLTVWRQ-----ADKFKIPAHCFINKMDKLAA  169 (753)
T ss_pred             cceeeeehh-----ccccCCchhhhhhhhhhhhh
Confidence            444554543     24568899999999998755

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=94.18  E-value=0.037  Score=53.88  Aligned_cols=22  Identities=23%  Similarity=0.658  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      ||+|+|+|||||||+..+|...
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            8999999999999999999965

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=94.11  E-value=0.075  Score=51.34  Aligned_cols=45  Identities=24%  Similarity=0.318  Sum_probs=29.1

Q ss_pred             CcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         190 DAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       190 D~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      |++++|+|+.++.+..+ ..+...+. . ...+.|+|+|.||+|+.+.
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~-l-~~~~kp~IlVlNK~DL~~~   45 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL-Q-AGGNKKLVLVLNKIDLVPK   45 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH-h-ccCCCCEEEEEehhhcCCH
Confidence            78999999988643221 11222211 1 2246899999999999764

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG0780|consensus

Probab=94.02  E-value=0.075  Score=57.14  Aligned_cols=25  Identities=12%  Similarity=0.250  Sum_probs=20.7

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHH
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~   83 (592)
                      ....--|++||-.|+||||.+..|.
T Consensus        98 K~kpsVimfVGLqG~GKTTtc~KlA  122 (483)
T KOG0780|consen   98 KGKPSVIMFVGLQGSGKTTTCTKLA  122 (483)
T ss_pred             cCCCcEEEEEeccCCCcceeHHHHH
Confidence            3344578899999999999998887

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=93.91  E-value=0.82  Score=44.40  Aligned_cols=22  Identities=14%  Similarity=0.253  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|+.|+|||||++-+++-
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl   48 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQ   48 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            8999999999999999998854

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=93.89  E-value=0.19  Score=54.68  Aligned_cols=23  Identities=17%  Similarity=0.449  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .-.|+|+|++||||||++..+..
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999874

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=93.87  E-value=0.056  Score=43.56  Aligned_cols=20  Identities=20%  Similarity=0.383  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~   83 (592)
                      ..+|.|+.|+|||||+..+.
T Consensus        25 ~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999887

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=93.81  E-value=0.13  Score=60.37  Aligned_cols=23  Identities=17%  Similarity=0.320  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      --|+|||++||||||++..|...
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~  208 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAAR  208 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhh
Confidence            36889999999999999998853

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=93.64  E-value=0.062  Score=47.14  Aligned_cols=26  Identities=15%  Similarity=0.353  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFS   88 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~   88 (592)
                      -.++|+|++|+|||+++..++..-..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            37899999999999999999865443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=93.63  E-value=0.055  Score=49.19  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|..|+|||||++.+++.
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEEccCCCccccceeeeccc
Confidence            7899999999999999988743

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=93.61  E-value=0.064  Score=43.63  Aligned_cols=21  Identities=24%  Similarity=0.558  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~   85 (592)
                      |++.|.+|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999854

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=93.58  E-value=0.058  Score=47.89  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~   85 (592)
                      |+|.|.+|||||||++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999844

...

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=93.52  E-value=0.059  Score=49.95  Aligned_cols=21  Identities=38%  Similarity=0.686  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~   85 (592)
                      |+|+|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999854

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK14737 gmk guanylate kinase; Provisional

Probab=93.52  E-value=0.062  Score=52.54  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .=|+|+|++|||||||+++|+..
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            34899999999999999999864

>PRK01889 GTPase RsgA; Reviewed

Probab=93.42  E-value=0.064  Score=57.84  Aligned_cols=23  Identities=30%  Similarity=0.600  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -+++|+|.+|||||||+|.+++.
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~  218 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGE  218 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHh
Confidence            38999999999999999999964

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=93.35  E-value=0.32  Score=49.30  Aligned_cols=64  Identities=22%  Similarity=0.213  Sum_probs=39.5

Q ss_pred             hhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524         165 KLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA  235 (592)
Q Consensus       165 ~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~  235 (592)
                      ........|+.|-|..   ...+++|.+|.|.|.+- .|+...+..-. |.+-.  .-.++.+|.||.|-.
T Consensus       135 e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~-~sl~taeri~~-L~~el--g~k~i~~V~NKv~e~  198 (255)
T COG3640         135 EVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSY-KSLRTAERIKE-LAEEL--GIKRIFVVLNKVDEE  198 (255)
T ss_pred             cEEEEecccchhhhcc---ccccCCCEEEEEeCCcH-HHHHHHHHHHH-HHHHh--CCceEEEEEeeccch
Confidence            3444555677665432   34678999999999763 34444333222 22211  137999999999965

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=93.35  E-value=0.058  Score=54.44  Aligned_cols=21  Identities=24%  Similarity=0.317  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      -|+|+|++|||||||+|-+-+
T Consensus        33 ~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            689999999999999998874

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=93.33  E-value=0.062  Score=51.44  Aligned_cols=22  Identities=18%  Similarity=0.288  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .|+|+|++|||||||++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998854

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK04195 replication factor C large subunit; Provisional

Probab=93.27  E-value=0.69  Score=51.89  Aligned_cols=23  Identities=30%  Similarity=0.621  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      --++|.|++|+||||+++.+++.
T Consensus        40 ~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         40 KALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999854

>TIGR00959 ffh signal recognition particle protein

Probab=93.21  E-value=0.17  Score=55.91  Aligned_cols=23  Identities=13%  Similarity=0.268  Sum_probs=19.6

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHH
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~   83 (592)
                      ...-|+++|.+|+||||++..|.
T Consensus        98 ~p~vi~~vG~~GsGKTTtaakLA  120 (428)
T TIGR00959        98 PPTVILMVGLQGSGKTTTCGKLA  120 (428)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHH
Confidence            35689999999999999977666

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK06217 hypothetical protein; Validated

Probab=93.21  E-value=0.073  Score=51.50  Aligned_cols=23  Identities=9%  Similarity=0.225  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .+|+|+|.+|+|||||..+|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999843

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=93.15  E-value=0.075  Score=51.55  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .|+|+|++|+|||||++.|...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999743

>TIGR03263 guanyl_kin guanylate kinase

Probab=93.06  E-value=0.074  Score=50.81  Aligned_cols=22  Identities=32%  Similarity=0.567  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .|+|+|++|||||||++.|+..
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            5899999999999999999963

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=93.05  E-value=0.08  Score=49.44  Aligned_cols=22  Identities=27%  Similarity=0.555  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .|+|+|+.|+|||||+..|++.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999843

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=93.05  E-value=0.078  Score=47.27  Aligned_cols=21  Identities=19%  Similarity=0.467  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~   85 (592)
                      |+|.|++|+|||+|++.++..
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999999854

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=93.05  E-value=0.061  Score=52.59  Aligned_cols=24  Identities=29%  Similarity=0.494  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNT   86 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~   86 (592)
                      .=++|.|++|||||||++.|....
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            458899999999999999999654

>PRK08233 hypothetical protein; Provisional

Probab=93.03  E-value=0.093  Score=49.96  Aligned_cols=24  Identities=13%  Similarity=0.230  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .+-|+|.|.+|+|||||.++|...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            367889999999999999999843

>PRK10867 signal recognition particle protein; Provisional

Probab=93.03  E-value=0.2  Score=55.47  Aligned_cols=23  Identities=13%  Similarity=0.286  Sum_probs=19.2

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHH
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~   83 (592)
                      ....|+++|.+||||||++..|.
T Consensus        99 ~p~vI~~vG~~GsGKTTtaakLA  121 (433)
T PRK10867         99 PPTVIMMVGLQGAGKTTTAGKLA  121 (433)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHH
Confidence            35688999999999999776665

>KOG0469|consensus

Probab=92.99  E-value=0.18  Score=55.76  Aligned_cols=55  Identities=20%  Similarity=0.233  Sum_probs=34.5

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524         176 NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA  235 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~  235 (592)
                      -.|++-....++-.|+.++|+|.-+.--...-..+.+.+     .+.+.-++|.||.|..
T Consensus       109 VDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~-----~ERIkPvlv~NK~DRA  163 (842)
T KOG0469|consen  109 VDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAI-----AERIKPVLVMNKMDRA  163 (842)
T ss_pred             ccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHH-----HhhccceEEeehhhHH
Confidence            556666666788899999999987654322212122222     2344556789999965

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=92.80  E-value=0.65  Score=47.91  Aligned_cols=21  Identities=19%  Similarity=0.268  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      -++|+|+.|||||||++.+.+
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999999985

>PRK14530 adenylate kinase; Provisional

Probab=92.76  E-value=0.096  Score=52.03  Aligned_cols=22  Identities=18%  Similarity=0.471  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .+|+|+|.+||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3899999999999999999974

>TIGR00235 udk uridine kinase

Probab=92.71  E-value=0.11  Score=51.27  Aligned_cols=25  Identities=16%  Similarity=0.291  Sum_probs=21.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      +...-|+|+|++|+|||||++.+.+
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999985

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK05480 uridine/cytidine kinase; Provisional

Probab=92.58  E-value=0.12  Score=50.82  Aligned_cols=26  Identities=15%  Similarity=0.296  Sum_probs=22.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .....|+|.|.+|||||||++.|...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            35679999999999999999999854

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=92.57  E-value=0.098  Score=51.26  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -+|+|+|++|+|||||+|-+.+=
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAGF   48 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAGF   48 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHhc
Confidence            38999999999999999988754

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=92.56  E-value=0.096  Score=46.85  Aligned_cols=21  Identities=19%  Similarity=0.485  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~   83 (592)
                      -.++|+|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            368999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PLN03025 replication factor C subunit; Provisional

Probab=92.55  E-value=0.91  Score=47.97  Aligned_cols=25  Identities=20%  Similarity=0.410  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFS   88 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~   88 (592)
                      .++|.|++|+||||++..++..-+.
T Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~~   60 (319)
T PLN03025         36 NLILSGPPGTGKTTSILALAHELLG   60 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhc
Confidence            5899999999999999998865443

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=92.53  E-value=0.098  Score=52.43  Aligned_cols=22  Identities=27%  Similarity=0.409  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      =.|+|+|++|+|||||+..+-.
T Consensus        29 evv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          29 EVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
Confidence            3799999999999999988863

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=92.53  E-value=0.099  Score=47.82  Aligned_cols=21  Identities=24%  Similarity=0.539  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+++|++|+|||+|+..++.
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999999884

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=92.50  E-value=0.096  Score=50.12  Aligned_cols=22  Identities=23%  Similarity=0.561  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..|+|+|.+||||||+++++..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999984

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=92.42  E-value=0.094  Score=56.04  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -++|+|++|||||||++-+.+-
T Consensus        31 f~vllGPSGcGKSTlLr~IAGL   52 (338)
T COG3839          31 FVVLLGPSGCGKSTLLRMIAGL   52 (338)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999998853

>KOG0459|consensus

Probab=92.41  E-value=0.16  Score=54.99  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=21.5

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHH
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~   83 (592)
                      ....++++|+|--.+||||+-.++.
T Consensus        76 pk~hvn~vfighVdagkstigg~il  100 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNIL  100 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeE
Confidence            4567999999999999999987665

>PRK03839 putative kinase; Provisional

Probab=92.40  E-value=0.11  Score=50.00  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      +|+|+|.+|+||||+..+|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999854

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=92.33  E-value=0.1  Score=50.95  Aligned_cols=21  Identities=19%  Similarity=0.499  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~   85 (592)
                      |+|+|++|||||||++.|...
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999853

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=92.27  E-value=1.3  Score=41.70  Aligned_cols=48  Identities=17%  Similarity=0.163  Sum_probs=33.6

Q ss_pred             HhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524         184 LSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA  235 (592)
Q Consensus       184 ~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~  235 (592)
                      ..+..+|.+|+|.+.+ ..++..+..+++.+...   ....+.+|.|++|..
T Consensus        80 ~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~  127 (179)
T cd02036          80 TAIAPADEALLVTTPE-ISSLRDADRVKGLLEAL---GIKVVGVIVNRVRPD  127 (179)
T ss_pred             HHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHc---CCceEEEEEeCCccc
Confidence            3467899999999865 45666676666666542   233567899999864

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=92.24  E-value=0.14  Score=49.66  Aligned_cols=24  Identities=8%  Similarity=0.246  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      ..-|.|+|.+|+|||||+.+++..
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHH
Confidence            346899999999999999999844

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=92.20  E-value=0.59  Score=51.91  Aligned_cols=71  Identities=10%  Similarity=0.044  Sum_probs=49.3

Q ss_pred             CcchhhhccccccCcchhHHHHHhhhcCCcEEEEEe-CCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524         162 LPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYA-IDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA  235 (592)
Q Consensus       162 ~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyD-vsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~  235 (592)
                      +.++-.....+-+....-.+....|++++++||  | .|.--+..+++.++..+... ....+-||+|--|.+..
T Consensus       132 vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLIL--DEPTaVLTP~E~~~lf~~l~~l-~~~G~tIi~ITHKL~Ev  203 (501)
T COG3845         132 VDPDAKVADLSVGEQQRVEILKALYRGARLLIL--DEPTAVLTPQEADELFEILRRL-AAEGKTIIFITHKLKEV  203 (501)
T ss_pred             CCccceeecCCcchhHHHHHHHHHhcCCCEEEE--cCCcccCCHHHHHHHHHHHHHH-HHCCCEEEEEeccHHHH
Confidence            344444444455556666677888999988776  4 34445678888888888766 45678899999998754

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=92.19  E-value=0.12  Score=46.42  Aligned_cols=48  Identities=15%  Similarity=0.182  Sum_probs=30.7

Q ss_pred             HHHHHhhhcCCcEEEEEeCCCcC-CHHHHHHHHHHHHHhhcCCCCCEEEEEeC
Q psy1524         180 AMRALSISSADAFILVYAIDDPN-SFEEIRLIRDHIFETKASTAVPIVVVGNK  231 (592)
Q Consensus       180 ~l~~~~~~~AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~~~~~~~~PIILVgNK  231 (592)
                      ......+......++|+|=-+.- +    ...+..|.......++++|++|+-
T Consensus        77 ~~~~~~l~~~~~~~lviDe~~~l~~----~~~l~~l~~l~~~~~~~vvl~G~~  125 (131)
T PF13401_consen   77 SLLIDALDRRRVVLLVIDEADHLFS----DEFLEFLRSLLNESNIKVVLVGTP  125 (131)
T ss_dssp             HHHHHHHHHCTEEEEEEETTHHHHT----HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred             HHHHHHHHhcCCeEEEEeChHhcCC----HHHHHHHHHHHhCCCCeEEEEECh
Confidence            34444566666689999955443 2    445555555545678899999976

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=92.13  E-value=0.11  Score=49.30  Aligned_cols=22  Identities=23%  Similarity=0.495  Sum_probs=16.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      --++|.|++|+|||+|++++..
T Consensus        25 ~~~ll~G~~G~GKT~ll~~~~~   46 (185)
T PF13191_consen   25 RNLLLTGESGSGKTSLLRALLD   46 (185)
T ss_dssp             --EEE-B-TTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999873

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=92.04  E-value=0.12  Score=50.07  Aligned_cols=21  Identities=38%  Similarity=0.428  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~   83 (592)
                      -.++|+|++|+|||||++.+.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            389999999999999999875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK00300 gmk guanylate kinase; Provisional

Probab=92.03  E-value=0.12  Score=50.63  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      --|+|+|++|+|||||++.+.+.
T Consensus         6 ~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          6 LLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999999854

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=91.79  E-value=0.14  Score=49.71  Aligned_cols=23  Identities=22%  Similarity=0.564  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -.|+|+|++|+|||||++.+++.
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            47999999999999999998853

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=91.71  E-value=0.14  Score=50.53  Aligned_cols=22  Identities=23%  Similarity=0.255  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|+.|+|||||++.+++-
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            7899999999999999999864

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=91.69  E-value=1.6  Score=45.85  Aligned_cols=43  Identities=12%  Similarity=0.129  Sum_probs=27.5

Q ss_pred             CCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524         189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA  235 (592)
Q Consensus       189 AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~  235 (592)
                      .+.+.++.|+.+...+......+..+...    ...+.+|.-+++..
T Consensus        55 ~~~~av~iD~r~~~~~~~~~~~~~~L~~~----g~~~~iI~L~a~~e   97 (288)
T PRK05416         55 IRKVAVVIDVRSRPFFDDLPEALDELRER----GIDVRVLFLDASDE   97 (288)
T ss_pred             CCCeEEEEccCchhhHHHHHHHHHHHHHc----CCcEEEEEEECCHH
Confidence            46688889998766455666666666553    34555566666543

>PF05729 NACHT: NACHT domain

Probab=91.67  E-value=0.14  Score=47.43  Aligned_cols=21  Identities=24%  Similarity=0.547  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~   85 (592)
                      ++|.|++|+|||||+.+++..
T Consensus         3 l~I~G~~G~GKStll~~~~~~   23 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQQ   23 (166)
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            789999999999999999854

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=91.65  E-value=0.58  Score=45.94  Aligned_cols=23  Identities=17%  Similarity=0.238  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      =+++|+|+.|+|||||++.+...
T Consensus        30 ~~~~l~G~Ng~GKStll~~i~~~   52 (202)
T cd03243          30 RLLLITGPNMGGKSTYLRSIGLA   52 (202)
T ss_pred             eEEEEECCCCCccHHHHHHHHHH
Confidence            38999999999999999999843

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=91.64  E-value=0.15  Score=50.46  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|+|||||++-+++-
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999999864

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=91.61  E-value=0.14  Score=51.98  Aligned_cols=21  Identities=24%  Similarity=0.423  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      -|+|||++|+|||||+..+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            689999999999999998875

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=91.55  E-value=0.14  Score=50.70  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      -|+++|++|||||||+|-+.+
T Consensus        33 ~vv~lGpSGcGKTTLLnl~AG   53 (259)
T COG4525          33 LVVVLGPSGCGKTTLLNLIAG   53 (259)
T ss_pred             EEEEEcCCCccHHHHHHHHhc
Confidence            689999999999999998774

>PRK14532 adenylate kinase; Provisional

Probab=91.55  E-value=0.15  Score=49.20  Aligned_cols=21  Identities=24%  Similarity=0.585  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      +|+|+|.+|+||||+..+|..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999983

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=91.52  E-value=0.16  Score=50.01  Aligned_cols=22  Identities=23%  Similarity=0.276  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|+.|+|||||++-+++-
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>KOG3347|consensus

Probab=91.51  E-value=0.14  Score=48.57  Aligned_cols=25  Identities=32%  Similarity=0.566  Sum_probs=22.7

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ....+|+|.|-||+|||||..++..
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            5668999999999999999999983

>PRK14531 adenylate kinase; Provisional

Probab=91.44  E-value=0.17  Score=48.93  Aligned_cols=22  Identities=23%  Similarity=0.504  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .+|+|+|++|+||||+..++..
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999974

>PRK13949 shikimate kinase; Provisional

Probab=91.43  E-value=0.16  Score=48.81  Aligned_cols=21  Identities=14%  Similarity=0.297  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      +|+|+|.+|+|||||...+..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998884

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=91.40  E-value=0.16  Score=50.93  Aligned_cols=22  Identities=18%  Similarity=0.335  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|+.|+|||||++.+++-
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~   49 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGL   49 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999854

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=91.40  E-value=0.16  Score=49.78  Aligned_cols=22  Identities=14%  Similarity=0.194  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|+.|+|||||++.+++-
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl   49 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGL   49 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999999864

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>KOG0395|consensus

Probab=91.38  E-value=0.097  Score=51.70  Aligned_cols=50  Identities=28%  Similarity=0.407  Sum_probs=43.2

Q ss_pred             CCCCCCCcceeeEEeecCCeEEeecccCcchHHHHHHHHHHhhhccCCChh
Q psy1524         336 NPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPA  386 (592)
Q Consensus       336 ~pVpydta~slas~d~~~~fvEiSAK~~~nI~~lf~e~v~~akkd~~~~~~  386 (592)
                      +.|+.++...++ ..|.|.|+|+|||.+.|+..+|.+++.++.+.+..++.
T Consensus       124 R~V~~eeg~~la-~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~~~~~~~  173 (196)
T KOG0395|consen  124 RQVSEEEGKALA-RSWGCAFIETSAKLNYNVDEVFYELVREIRLPREGSLK  173 (196)
T ss_pred             cccCHHHHHHHH-HhcCCcEEEeeccCCcCHHHHHHHHHHHHHhhhccccc
Confidence            678888877764 78999999999999999999999999999887776543

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=91.34  E-value=0.48  Score=51.98  Aligned_cols=25  Identities=12%  Similarity=0.266  Sum_probs=21.3

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHH
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~   83 (592)
                      ......|+++|-.|+||||.+-.|.
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA  121 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLA  121 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHH
Confidence            3456789999999999999987776

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=91.32  E-value=0.15  Score=50.15  Aligned_cols=22  Identities=14%  Similarity=0.215  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|+|||||++.+.+-
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl   48 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATL   48 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999864

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=91.31  E-value=0.14  Score=49.23  Aligned_cols=22  Identities=23%  Similarity=0.551  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      +|+|+|.+|+||||+...|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999843

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=91.30  E-value=0.17  Score=49.47  Aligned_cols=22  Identities=18%  Similarity=0.286  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|+|||||++-+.+-
T Consensus        26 ~~~i~G~nGsGKSTLl~~l~G~   47 (206)
T TIGR03608        26 MYAIIGESGSGKSTLLNIIGLL   47 (206)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=91.29  E-value=0.17  Score=50.97  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|+|||||++.+++-
T Consensus        30 ~~~l~G~nGsGKSTLl~~l~Gl   51 (243)
T TIGR02315        30 FVAIIGPSGAGKSTLLRCINRL   51 (243)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999998854

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=91.23  E-value=0.16  Score=50.01  Aligned_cols=22  Identities=27%  Similarity=0.356  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -|+|+|++|+||||+++.++..
T Consensus         3 lilI~GptGSGKTTll~~ll~~   24 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDY   24 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999998753

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=91.22  E-value=0.16  Score=49.15  Aligned_cols=22  Identities=18%  Similarity=0.301  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~   41 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGL   41 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999988854

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=91.21  E-value=0.18  Score=50.11  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|+.|+|||||++-+++.
T Consensus        28 ~~~i~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          28 IFGLLGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999999864

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	592
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		9e-12
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		5e-11
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		3e-10
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		6e-10
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		6e-10
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		2e-09
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-09
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-08
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-08
3u5c_K	105	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-08
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		2e-08
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		3e-08
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		3e-08
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		3e-08
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		3e-08
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		4e-08
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		4e-08
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		4e-08
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		4e-08
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-08
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		4e-08
4q21_A	189	Molecular Switch For Signal Transduction: Structura		4e-08
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		4e-08
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		4e-08
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		4e-08
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		4e-08
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		4e-08
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		4e-08
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		4e-08
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		5e-08
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		5e-08
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		5e-08
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-08
1wq1_R	166	Ras-Rasgap Complex Length = 166		5e-08
6q21_A	171	Molecular Switch For Signal Transduction: Structura		5e-08
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		5e-08
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		5e-08
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		5e-08
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		5e-08
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-08
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		5e-08
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		5e-08
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		5e-08
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		5e-08
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-08
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		6e-08
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		6e-08
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-08
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		9e-08
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		1e-07
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		1e-07
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		1e-07
3zey_D	172	High-resolution Cryo-electron Microscopy Structure		2e-07
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-07
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-07
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		2e-07
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		2e-07
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		6e-07
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		3e-06
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		3e-06
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		3e-06
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		3e-06
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		4e-06
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		5e-06
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		6e-06
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		7e-06
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		9e-06
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		1e-05
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		1e-05
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		1e-05
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		1e-05
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		1e-05
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		1e-05
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		1e-05
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-05
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		3e-05
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-05
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		4e-05
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		9e-05
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		1e-04
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		1e-04
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		5e-04
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		8e-04
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		8e-04
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		8e-04
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		8e-04
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		9e-04

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 35/155 (22%)
Query: 156 YKTDVQLPSKLTSLAMTCST--NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
           Y+  +     + +L +T +T  ++FPAM+ LSIS   AFILVY+I    S EE++ I + 
Sbjct: 40  YRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQ 99
Query: 214 IFETKAST-AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP 272
           I E K    ++PI++VGNK D                                 +P +  
Sbjct: 100 ICEIKGDVESIPIMLVGNKCD--------------------------------ESPSREV 127
Query: 273 YDTTESVVQVDWENGFVEASAKDNTNITQVFKELL 307
             +    +   W+  F+E SAK N N+ ++F+ELL
Sbjct: 128 QSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 37/173 (21%)
Query: 155 AYKTDVQLPSKLTSLAMTCST--NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRD 212
            Y+  +     + +L +T +T  ++FPAM+ LSIS   AFILV+++    S EE+  I  
Sbjct: 44  TYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYK 103
Query: 213 HIFETKASTA-VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQV 271
            I + K S   +P+++VGNK D  +  R+VD                             
Sbjct: 104 LIVQIKGSVEDIPVMLVGNKCD--ETQREVDTREA------------------------- 136
Query: 272 PYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRR 324
                ++V Q +W+  F+E SAK N N+ ++F+ELL   + + N+S  +  +R
Sbjct: 137 -----QAVAQ-EWKCAFMETSAKMNYNVKELFQELLT-LETRRNMSLNIDGKR 182

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 34/156 (21%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
           Y+ ++++ S  + L +  T  T +F +MR L I +   FILVY++ +  SF++I+ +RD 
Sbjct: 40  YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQ 99
Query: 214 IFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPY 273
           I   K    VP+++VGNK DL  E       G                            
Sbjct: 100 IIRVKRYEKVPVILVGNKVDLESEREVSSSEG---------------------------- 131
Query: 274 DTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQ 309
                 +  +W   F+E SAK  T + ++F E++ Q
Sbjct: 132 ----RALAEEWGCPFMETSAKSKTMVDELFAEIVRQ 163

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 35/158 (22%)
Query: 155 AYKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRD 212
           +Y+  V++ ++   L +  T  T +F AMR L + +   F LVY+I   ++F +++ +R+
Sbjct: 41  SYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLRE 100
Query: 213 HIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP 272
            I   K +  VP+++VGNK DL DE                     V   Q      Q  
Sbjct: 101 QILRVKDTDDVPMILVGNKCDLEDER-------------------VVGKEQGQNLARQ-- 139
Query: 273 YDTTESVVQVDWEN-GFVEASAKDNTNITQVFKELLVQ 309
                      W N  F+E+SAK   N+ ++F +L+ Q
Sbjct: 140 -----------WNNCAFLESSAKSKINVNEIFYDLVRQ 166

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 35/158 (22%)
Query: 155 AYKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRD 212
           +Y+  V++ ++   L +  T  T +F AMR L + +   F LVY+I   ++F +++ +R+
Sbjct: 39  SYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLRE 98
Query: 213 HIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP 272
            I   K +  VP+++VGNK DL DE                     V   Q      Q  
Sbjct: 99  QILRVKDTDDVPMILVGNKCDLEDER-------------------VVGKEQGQNLARQ-- 137
Query: 273 YDTTESVVQVDWEN-GFVEASAKDNTNITQVFKELLVQ 309
                      W N  F+E+SAK   N+ ++F +L+ Q
Sbjct: 138 -----------WNNCAFLESSAKSKINVNEIFYDLVRQ 164

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 35/158 (22%)
Query: 155 AYKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRD 212
           +Y+  V++  +   L +  T  T +F AMR L + +   F LVY+I   ++F +++ +R+
Sbjct: 39  SYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLRE 98
Query: 213 HIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP 272
            I   K +  VP+++VGNK DL DE                     V   Q      Q  
Sbjct: 99  QILRVKDTEDVPMILVGNKCDLEDER-------------------VVGKEQGQNLARQ-- 137
Query: 273 YDTTESVVQVDWEN-GFVEASAKDNTNITQVFKELLVQ 309
                      W N  F+E+SAK   N+ ++F +L+ Q
Sbjct: 138 -----------WCNCAFLESSAKSKINVNEIFYDLVRQ 164

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 35/158 (22%)
Query: 155 AYKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRD 212
           +Y+  V++  +   L +  T  T +F AMR L + +   F LVY+I   ++F +++ +R+
Sbjct: 39  SYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLRE 98
Query: 213 HIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP 272
            I   K +  VP+++VGNK DL DE                     V   Q      Q  
Sbjct: 99  QILRVKDTEDVPMILVGNKCDLEDER-------------------VVGKEQGQNLARQ-- 137
Query: 273 YDTTESVVQVDWEN-GFVEASAKDNTNITQVFKELLVQ 309
                      W N  F+E+SAK   N+ ++F +L+ Q
Sbjct: 138 -----------WCNCAFLESSAKSKINVNEIFYDLVRQ 164

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
           SDLA    E+RQ
Sbjct: 118 SDLAARTVESRQ 129

>pdb|3U5C|K Chain K, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 105

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 10/64 (15%)
Query: 405 SLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQM 464
           SL SKG+V  QF+W++YY+ +T +G+E LR  LN+P+ IVP T  ++          R  
Sbjct: 48  SLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQE----------RNP 97
Query: 465 TQRP 468
           TQRP
Sbjct: 98  TQRP 101

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 32/136 (23%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    EF AMR   + + + F+LV+++ D  SFEEI   +  I   K     P++++GNK
Sbjct: 60  TAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNK 119
Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
           +DL D  RQV    G              A Q+  T                    ++EA
Sbjct: 120 ADL-DHQRQVTQEEG-----------QQLARQLKVT--------------------YMEA 147
Query: 292 SAKDNTNITQVFKELL 307
           SAK   N+ Q F EL+
Sbjct: 148 SAKIRMNVDQAFHELV 163

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T +  E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 XDLAARTVESRQ 129

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
           L  +  T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+
Sbjct: 57  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 116
Query: 226 VVVGNKSDLA 235
           V+VGNK DLA
Sbjct: 117 VLVGNKCDLA 126

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
           L  +  T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+
Sbjct: 57  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 116
Query: 226 VVVGNKSDLA 235
           V+VGNK DLA
Sbjct: 117 VLVGNKCDLA 126

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
           L  +  T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+
Sbjct: 58  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 117
Query: 226 VVVGNKSDLA 235
           V+VGNK DLA
Sbjct: 118 VLVGNKCDLA 127

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T +  E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 XDLAARTVESRQ 129

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAGRTVESRQ 129

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 155 AYKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRD 212
           +Y+  V +  ++  L +  T    E+ AMR   + + + F+ V+AI++  SFE+I   R+
Sbjct: 39  SYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 213 HIFETKASTAVPIVVVGNKSDLAD---ENRQ 240
            I   K S  VP+V+VGNK DLA    E+RQ
Sbjct: 99  QIKRVKDSDDVPMVLVGNKCDLAARTVESRQ 129

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
           L  +  T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+
Sbjct: 52  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 226 VVVGNKSDLA 235
           V+VGNK DLA
Sbjct: 112 VLVGNKCDLA 121

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 65  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 124
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 125 CDLAARTVESRQ 136

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
           L  +  T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+
Sbjct: 53  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112
Query: 226 VVVGNKSDL 234
           V+VGNKSDL
Sbjct: 113 VLVGNKSDL 121

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
           L  +  T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+
Sbjct: 53  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112
Query: 226 VVVGNKSDL 234
           V+VGNKSDL
Sbjct: 113 VLVGNKSDL 121

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
           L  +  T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+
Sbjct: 53  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112
Query: 226 VVVGNKSDL 234
           V+VGNKSDL
Sbjct: 113 VLVGNKSDL 121

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
           L  +  T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+
Sbjct: 57  LLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 116
Query: 226 VVVGNKSDLA 235
           V+VGNK DLA
Sbjct: 117 VLVGNKCDLA 126

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 70/169 (41%), Gaps = 43/169 (25%)
Query: 162 LPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221
           +P++L  L  T    EF AMR   + +   F+LV+AI+D  SF E+  +   I   K   
Sbjct: 55  IPARLDILD-TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD 113
Query: 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ 281
             P+V+VGNK+DL  +                                QVP  +  S   
Sbjct: 114 DFPVVLVGNKADLESQR-------------------------------QVPR-SEASAFG 141
Query: 282 VDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPP 330
                 + EASAK   N+ + F++L+           A+R+ + Q LPP
Sbjct: 142 ASHHVAYFEASAKLRLNVDEAFEQLV----------RAVRKYQEQELPP 180

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 164 SKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV 223
           + L  +  T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  V
Sbjct: 50  TXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDV 109
Query: 224 PIVVVGNKSDLAD---ENRQ 240
           P+V+VGNK DLA    E+RQ
Sbjct: 110 PMVLVGNKCDLAARTVESRQ 129

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGN+
Sbjct: 58  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNR 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
           L  +  T    E+ AMR   + + + F+ V+AI++  SF +I L R+ I   K S  VP+
Sbjct: 70  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPM 129
Query: 226 VVVGNKSDL 234
           V+VGNK DL
Sbjct: 130 VLVGNKCDL 138

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
           L  +  T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+
Sbjct: 70  LLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 129
Query: 226 VVVGNKSDL 234
           V+VGNK DL
Sbjct: 130 VLVGNKCDL 138

>pdb|3ZEY|D Chain D, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 172

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 405 SLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQART 454
           SLKS+G + EQFAWRH+YW + ++GI  +R  L +  + VP+T K   +T
Sbjct: 55  SLKSRGLIKEQFAWRHFYWTLNDEGINYMRKYLYLGADAVPNTHKVDHKT 104

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
           L  +  T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+
Sbjct: 53  LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112
Query: 226 VVVGNKSDL 234
           V+VGNK DL
Sbjct: 113 VLVGNKCDL 121

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 33/143 (23%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST-AVPIVVVGN 230
           T    ++ A+R     S + F+LV++I +  SF      R+ I   KA    +P++VVGN
Sbjct: 58  TAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGN 117
Query: 231 KSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVE 290
           KSDL +E R                              QVP +   S  + +W   +VE
Sbjct: 118 KSDL-EERR------------------------------QVPVEEARSKAE-EWGVQYVE 145
Query: 291 ASAKDNTNITQVFKELLVQAKVK 313
            SAK   N+ +VF +L+ + + K
Sbjct: 146 TSAKTRANVDKVFFDLMREIRTK 168

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E  AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK
Sbjct: 58  TAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 232 SDLAD---ENRQ 240
            DLA    E+RQ
Sbjct: 118 CDLAARTVESRQ 129

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 33/143 (23%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST-AVPIVVVGN 230
           T    ++ A+R     S + F+LV++I +  SF      R+ I   KA    +P++VVGN
Sbjct: 62  TAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGN 121
Query: 231 KSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVE 290
           KSDL +E R                              QVP +   S  + +W   +VE
Sbjct: 122 KSDL-EERR------------------------------QVPVEEARSKAE-EWGVQYVE 149
Query: 291 ASAKDNTNITQVFKELLVQAKVK 313
            SAK   N+ +VF +L+ + + K
Sbjct: 150 TSAKTRANVDKVFFDLMREIRTK 172

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 32/142 (22%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    ++ A+R     S + F+ V++I +  SF      R+ I   K    VP ++VGNK
Sbjct: 59  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 118
Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
           SDL D+ RQV +                   +     DQ             W   +VE 
Sbjct: 119 SDLEDK-RQVSV------------------EEAKNRADQ-------------WNVNYVET 146
Query: 292 SAKDNTNITQVFKELLVQAKVK 313
           SAK   N+ +VF +L+ + + +
Sbjct: 147 SAKTRANVDKVFFDLMREIRAR 168

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 35/134 (26%)
Query: 178 FPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237
           FP   ++ I   + +ILVY++    SFE I++I   + +      +PI++VGNK DL  E
Sbjct: 70  FPQTYSIDI---NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 238 NRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297
                                            + Y+  +++ +  W   F+E+SAK+N 
Sbjct: 127 RV-------------------------------ISYEEGKALAE-SWNAAFLESSAKENQ 154
Query: 298 NITQVFKELLVQAK 311
               VF+ ++++A+
Sbjct: 155 TAVDVFRRIILEAE 168

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 32/142 (22%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    ++ A+R     S + F+ V++I +  SF      R+ I   K    VP ++VGNK
Sbjct: 73  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 132
Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
           SDL D+ RQV +                   +     +Q             W   +VE 
Sbjct: 133 SDLEDK-RQVSV------------------EEAKNRAEQ-------------WNVNYVET 160
Query: 292 SAKDNTNITQVFKELLVQAKVK 313
           SAK   N+ +VF +L+ + + +
Sbjct: 161 SAKTRANVDKVFFDLMREIRAR 182

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 32/142 (22%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    ++ A+R     S + F+ V++I +  SF      R+ I   K    VP ++VGNK
Sbjct: 61  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
           SDL D+ RQV +                   +     +Q             W   +VE 
Sbjct: 121 SDLEDK-RQVSV------------------EEAKNRAEQ-------------WNVNYVET 148
Query: 292 SAKDNTNITQVFKELLVQAKVK 313
           SAK   N+ +VF +L+ + + +
Sbjct: 149 SAKTRANVDKVFFDLMREIRAR 170

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 32/142 (22%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    ++ A+R     S + F+ V++I +  SF      R+ I   K    VP ++VGNK
Sbjct: 61  TAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
           SDL D+ RQV +                   +     +Q             W   +VE 
Sbjct: 121 SDLEDK-RQVSV------------------EEAKNRAEQ-------------WNVNYVET 148
Query: 292 SAKDNTNITQVFKELLVQAKVK 313
           SAK   N+ +VF +L+ + + +
Sbjct: 149 SAKTRANVDKVFFDLMREIRAR 170

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 35/134 (26%)
Query: 178 FPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237
           FP   ++ I   + +ILVY++    SFE I++I   + +      +PI++VGNK DL  E
Sbjct: 70  FPQTYSIDI---NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 238 NRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297
                                            + Y+  +++ +  W   F+E+SAK+N 
Sbjct: 127 RV-------------------------------ISYEEGKALAE-SWNAAFLESSAKENQ 154
Query: 298 NITQVFKELLVQAK 311
               VF+ ++++A+
Sbjct: 155 TAVDVFRRIILEAE 168

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 35/134 (26%)
Query: 178 FPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237
           FP   ++ I   + +ILVY++    SFE I++I   + +      +PI++VGNK DL  E
Sbjct: 68  FPQTYSIDI---NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 238 NRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297
                                            + Y+  +++ +  W   F+E+SAK+N 
Sbjct: 125 RV-------------------------------ISYEEGKALAE-SWNAAFLESSAKENQ 152
Query: 298 NITQVFKELLVQAK 311
               VF+ ++++A+
Sbjct: 153 TAVDVFRRIILEAE 166

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 35/134 (26%)
Query: 178 FPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE 237
           FP   ++ I   + +ILVY++    SFE I++I   + +      +PI++VGNK DL  E
Sbjct: 65  FPQTYSIDI---NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 238 NRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297
                                            + Y+  +++ +  W   F+E+SAK+N 
Sbjct: 122 RV-------------------------------ISYEEGKALAE-SWNAAFLESSAKENQ 149
Query: 298 NITQVFKELLVQAK 311
               VF+ ++++A+
Sbjct: 150 TAVDVFRRIILEAE 163

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 32/142 (22%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    ++ A+R     S + F+ V++I +  SF      R+ I   K    VP ++VGNK
Sbjct: 69  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 128
Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
           SDL D+ RQV +                   +     +Q             W   +VE 
Sbjct: 129 SDLEDK-RQVSV------------------EEAKNRAEQ-------------WNVNYVET 156
Query: 292 SAKDNTNITQVFKELLVQAKVK 313
           SAK   N+ +VF +L+ + + +
Sbjct: 157 SAKTRANVDKVFFDLMREIRAR 178

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    EF AMR   + + D F++VY++ D  SFE +      I   K   + P+++V NK
Sbjct: 73  TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANK 132
Query: 232 SDL 234
            DL
Sbjct: 133 VDL 135

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    EF AMR   + + D F++VY++ D  SFE +      I   K   + P+++V NK
Sbjct: 73  TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANK 132
Query: 232 SDL 234
            DL
Sbjct: 133 VDL 135

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    EF AMR   + + D F++VY++ D  SFE +      I   K   + P+++V NK
Sbjct: 73  TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANK 132
Query: 232 SDL 234
            DL
Sbjct: 133 VDL 135

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    EF AMR   + + D F++VY++ D  SFE +      I   K   + P+++V NK
Sbjct: 68  TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANK 127
Query: 232 SDL 234
            DL
Sbjct: 128 VDL 130

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 52/206 (25%)
Query: 122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQ-RPMAYKT--------DVQLPSKLTSLAM- 171
           SGK L    +L G    G   +  R   N+    A+ T        D+++  +  +L + 
Sbjct: 2   SGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIW 61
Query: 172 -TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIF--ETKASTAVPIVV 227
            T     F ++R      AD  +L +++DD  SFE +    ++ I+  + K     P VV
Sbjct: 62  DTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVV 121
Query: 228 VGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG 287
           +GNK D   E+RQV                                 TTE       ENG
Sbjct: 122 LGNKVD--KEDRQV---------------------------------TTEEAQTWCMENG 146
Query: 288 ---FVEASAKDNTNITQVFKELLVQA 310
              ++E SAKD+TN+T  F+E + Q 
Sbjct: 147 DYPYLETSAKDDTNVTVAFEEAVRQV 172

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG 245
           ++  DA+++VY++ D  SFE+   +R  +   + +  VPI++VGNKSDL   +R+V +  
Sbjct: 70  MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-RSREVSVDE 128
Query: 246 G 246
           G
Sbjct: 129 G 129

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG 245
           ++  DA+++VY++ D  SFE+   +R  +   + +  VPI++VGNKSDL   +R+V +  
Sbjct: 75  MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-RSREVSVDE 133
Query: 246 G 246
           G
Sbjct: 134 G 134

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG 245
           ++  DA+++VY++ D  SFE+   +R  +   + +  VPI++VGNKSDL   +R+V +  
Sbjct: 75  MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-RSREVSVDE 133
Query: 246 G 246
           G
Sbjct: 134 G 134

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 32/135 (23%)
Query: 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPF 248
            DA+++VY+I D  SFE+   +R  +   + +  +PI++VGNKSDL    R+V ++ G  
Sbjct: 81  GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-RXREVSVSEG-- 137
Query: 249 QTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLV 308
                                            V ++  F+E SA    N+ ++F+ ++ 
Sbjct: 138 -----------------------------RAXAVVFDXKFIETSAAVQHNVKELFEGIVR 168
Query: 309 QAKVKYNLSPALRRR 323
           Q +++ +      RR
Sbjct: 169 QVRLRRDSKEKNERR 183

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 32/125 (25%)
Query: 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPF 248
            DA+++VY+I D  SFE+   +R  +   + +  +PI++VGNKSDL    R+V ++ G  
Sbjct: 81  GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-RCREVSVSEG-- 137
Query: 249 QTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLV 308
                      CA                    V ++  F+E SA    N+ ++F+ ++ 
Sbjct: 138 ---------RACA--------------------VVFDCKFIETSAAVQHNVKELFEGIVR 168
Query: 309 QAKVK 313
           Q +++
Sbjct: 169 QVRLR 173

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 32/135 (23%)
Query: 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPF 248
            DA+++VY+I D  SFE+   +R  +   + +  +PI++VGNKSDL    R+V ++    
Sbjct: 81  GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-RXREVSVS---- 135
Query: 249 QTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLV 308
                            G    V +D             F+E SA    N+ ++F+ ++ 
Sbjct: 136 ----------------EGRAXAVVFDCK-----------FIETSAAVQHNVKELFEGIVR 168
Query: 309 QAKVKYNLSPALRRR 323
           Q +++ +      RR
Sbjct: 169 QVRLRRDSKEKNERR 183

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 32/125 (25%)
Query: 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPF 248
            DA+++VY+I D  SFE+   +R  +   + +  +PI++VGNKSDL    R+V ++ G  
Sbjct: 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-RCREVSVSEGR- 169
Query: 249 QTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLV 308
                      CA         V +D             F+E SA    N+ ++F+ ++ 
Sbjct: 170 ----------ACA---------VVFDCK-----------FIETSAAVQHNVKELFEGIVR 199
Query: 309 QAKVK 313
           Q +++
Sbjct: 200 QVRLR 204

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 169 LAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVV 228
           L  T   +E+  +    I     ++LVY++   +SF+ I  +   + E    T VP+V+V
Sbjct: 76  LVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLV 135
Query: 229 GNKSDLADENRQVDLTGG 246
           GNK+DL+ E R+V    G
Sbjct: 136 GNKADLSPE-REVQAVEG 152

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG 245
           +    A+++VY+I D  SFE    +R  +  T  +  VPI++VGNK+DLA   R+V +  
Sbjct: 75  LQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA-RCREVSVEE 133
Query: 246 G 246
           G
Sbjct: 134 G 134

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 57/171 (33%)
Query: 76  SSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP 135
           S+++ RFL   F  +Y  T+E  +    +++   + ++ILDT+G++     +      G 
Sbjct: 42  SALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQRE------GH 95
Query: 136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILV 195
            +WG                                                  + F+LV
Sbjct: 96  MRWG--------------------------------------------------EGFVLV 105
Query: 196 YAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGG 246
           Y I D  SFEE+  +++ + E K    V +++VGNK+DL D +RQV    G
Sbjct: 106 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL-DHSRQVSTEEG 155

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 23/141 (16%)
Query: 117 TSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAY--------KTDVQLPSKLTS 168
           +SG    + +KC  V+ G    G + + +    N  P  Y          +V +  K  +
Sbjct: 2   SSGSSGMQAIKC--VVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVN 59
Query: 169 LAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKAST 221
           L +  T    ++  +R LS    D F++ +++  P SFE +R      +R H   T    
Sbjct: 60  LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT---- 115
Query: 222 AVPIVVVGNKSDLADENRQVD 242
             PI++VG K DL D+   ++
Sbjct: 116 --PIILVGTKLDLRDDKDTIE 134

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 27/137 (19%)
Query: 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMA----------YKTDVQLPSKLTSLAM- 171
           G+ +KC  V  G     + K CL  +      +          Y  +V +  K  +L + 
Sbjct: 11  GQAIKCVVVGDG----AVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLW 66
Query: 172 -TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKASTAVPI 225
            T    ++  +R LS    D F++ +++  P SFE +R      +R H   T      PI
Sbjct: 67  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT------PI 120
Query: 226 VVVGNKSDLADENRQVD 242
           ++VG K DL D+   ++
Sbjct: 121 ILVGTKLDLRDDKDTIE 137

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
           Y  +V +  K  +L +  T    ++  +R LS    D F++ +++  P SFE +R     
Sbjct: 67  YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYP 126
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
            +R H   T      PI++VG K DL D+   ++
Sbjct: 127 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 154

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
           Y  +V +  K  +L +  T    ++  +R LS    D F++ +++  P SFE +R     
Sbjct: 67  YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYP 126
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
            +R H   T      PI++VG K DL D+   ++
Sbjct: 127 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 154

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL---- 209
           Y  +V +  K  +L +  T    ++  +R LS    D F++ +++  P SFE +R     
Sbjct: 67  YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYP 126
Query: 210 -IRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
            +R H   T      PI++VG K DL D+   ++
Sbjct: 127 EVRHHCPNT------PIILVGTKLDLRDDKDTIE 154

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 32/178 (17%)
Query: 156 YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
           Y  D+++  K   LA+  T    ++  +R LS    D  ++ ++ID P+S E I      
Sbjct: 42  YIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP--EKW 99
Query: 214 IFETKA-STAVPIVVVGNKSDL-ADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQV 271
             E K     VPI++VGNK DL  DE+ + +L     +   S     + A++IS      
Sbjct: 100 TPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDM-ANRISAF---- 154
Query: 272 PYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLP 329
                          G++E SAK    + +VF E+  +A ++       + +RR+  P
Sbjct: 155 ---------------GYLECSAKTKEGVREVF-EMATRAGLQVR-----KNKRRRGCP 191

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	592
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	5e-44
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	1e-04
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	8e-43
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	9e-43
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	3e-05
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	3e-42
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	4e-40
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	8e-05
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-37
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	3e-37
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	1e-36
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-36
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	5e-36
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-33
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-32
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	2e-31
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-27
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	4e-27
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	7e-14
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	5e-27
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	3e-13
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-26
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	7e-14
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	6e-26
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	1e-11
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	9e-26
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	9e-13
2xzm_7	162	Plectin/S10 domain containing protein; ribosome, t	3e-25
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	3e-25
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-15
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	1e-23
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	5e-07
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	5e-04
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-23
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	3e-13
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	8e-23
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	2e-10
3u5c_K	105	40S ribosomal protein S10-A; translation, ribosome	9e-21
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	3e-19
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	3e-19
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	4e-18
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	9e-18
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	1e-17
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	1e-11
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-17
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	5e-17
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	5e-17
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	6e-17
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	2e-16
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	2e-16
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	3e-16
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	1e-15
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	5e-15
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-07
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	3e-14
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	4e-14
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-13
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	3e-13
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	2e-07
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	8e-13
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	2e-08
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	2e-12
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	8e-07
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	2e-12
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	4e-05
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	3e-12
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	2e-07
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	3e-12
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-08
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	5e-12
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-08
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	6e-12
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	6e-08
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	6e-12
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-06
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	7e-12
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	7e-08
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	8e-12
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	5e-06
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-11
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	6e-07
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-11
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	3e-07
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-11
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-09
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	2e-11
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-07
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	2e-11
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-07
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	3e-11
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	2e-07
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	3e-11
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	4e-07
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	3e-11
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-07
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	4e-11
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	9e-07
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	5e-11
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	4e-09
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	5e-11
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	5e-08
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	6e-11
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-07
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	8e-11
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	3e-06
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	8e-11
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-06
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	9e-11
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	5e-09
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-10
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	6e-08
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-10
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	6e-07
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-10
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-10
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	5e-08
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-10
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-07
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-10
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	9e-08
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	2e-10
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	7e-09
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-10
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	5e-06
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-10
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	9e-07
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	2e-10
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	7e-06
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	3e-10
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-07
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	3e-10
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	4e-07
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	4e-10
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	5e-10
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	3e-08
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	4e-09
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	4e-06
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-08
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	2e-06
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	3e-08
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	3e-04
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	5e-07
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	3e-06
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	7e-05
3llu_A	196	RAS-related GTP-binding protein C; structural geno	3e-06
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	6e-06
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	9e-06
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	2e-04

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  153 bits (389), Expect = 5e-44
 Identities = 68/267 (25%), Positives = 101/267 (37%), Gaps = 99/267 (37%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS 122
           ++V V G   VGKSS++ RF+  TF   Y  T+E+ + +  S +     L I        
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQI-------- 55

Query: 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR 182
                             D                              T  +++FPAM+
Sbjct: 56  -----------------TD------------------------------TTGSHQFPAMQ 68

Query: 183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA-VPIVVVGNKSDLADENRQV 241
            LSIS   AFILVY+I    S EE++ I + I E K     +PI++VGNK D +   R+V
Sbjct: 69  RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS-REV 127

Query: 242 DLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301
                                              E++ +  W+  F+E SAK N N+ +
Sbjct: 128 Q------------------------------SSEAEALAR-TWKCAFMETSAKLNHNVKE 156

Query: 302 VFKELLVQAKVKYNLSPALRRRRRQSL 328
           +F+ELL              +RR  SL
Sbjct: 157 LFQELLNLE-----------KRRTVSL 172

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 12/58 (20%)

Query: 338 VPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSL 395
           V     E++ +  W+  F+E SAK N N+ ++F+ELL              +RR  SL
Sbjct: 127 VQSSEAEALAR-TWKCAFMETSAKLNHNVKELFQELLNLE-----------KRRTVSL 172

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  150 bits (381), Expect = 8e-43
 Identities = 63/249 (25%), Positives = 99/249 (39%), Gaps = 87/249 (34%)

Query: 61  TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120
             +KVVV+G   VGKS++  +F+  TF  KY  TIE+ + ++  ++     L+I      
Sbjct: 2   REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEI------ 55

Query: 121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPA 180
                              LD                              T  T +F +
Sbjct: 56  -------------------LD------------------------------TAGTEQFAS 66

Query: 181 MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQ 240
           MR L I +   FILVY++ +  SF++I+ +RD I   K    VP+++VGNK DL  E R+
Sbjct: 67  MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE-RE 125

Query: 241 VDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300
           V  + G  +           A +                    W   F+E SAK  T + 
Sbjct: 126 VSSSEG--RAL---------AEE--------------------WGCPFMETSAKSKTMVD 154

Query: 301 QVFKELLVQ 309
           ++F E++ Q
Sbjct: 155 ELFAEIVRQ 163

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  151 bits (383), Expect = 9e-43
 Identities = 64/273 (23%), Positives = 98/273 (35%), Gaps = 89/273 (32%)

Query: 59  HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTS 118
               ++VVV G   VGKSS++ RF+  TF   Y  TIE+ + +  S +     L I    
Sbjct: 5   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQI---- 60

Query: 119 GEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEF 178
                                 D                              T  +++F
Sbjct: 61  ---------------------TD------------------------------TTGSHQF 69

Query: 179 PAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK-ASTAVPIVVVGNKSDLADE 237
           PAM+ LSIS   AFILV+++    S EE+  I   I + K +   +P+++VGNK D    
Sbjct: 70  PAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDE--T 127

Query: 238 NRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297
            R+VD                  A +                    W+  F+E SAK N 
Sbjct: 128 QREVDTREA-----------QAVAQE--------------------WKCAFMETSAKMNY 156

Query: 298 NITQVFKELLVQAKVKYNLSPALRRRRRQSLPP 330
           N+ ++F+ELL     +        +R  +    
Sbjct: 157 NVKELFQELLTLETRRNMSLNIDGKRSGKQKRT 189

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 350 DWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPP 397
           +W+  F+E SAK N N+ ++F+ELL     +        +R  +    
Sbjct: 142 EWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQKRT 189

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  148 bits (377), Expect = 3e-42
 Identities = 60/249 (24%), Positives = 95/249 (38%), Gaps = 86/249 (34%)

Query: 61  TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120
             +K+VV+G   VGKS++  +F+   F  KY  TIE+ + +   ++     L+I      
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEI------ 55

Query: 121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPA 180
                              LD                              T  T +F A
Sbjct: 56  -------------------LD------------------------------TAGTEQFTA 66

Query: 181 MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQ 240
           MR L + +   F LVY+I   ++F +++ +R+ I   K +  VP+++VGNK DL DE R 
Sbjct: 67  MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE-RV 125

Query: 241 VDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300
           V    G  Q           A Q                        F+E+SAK   N+ 
Sbjct: 126 VGKEQG--QNL---------ARQWCNCA-------------------FLESSAKSKINVN 155

Query: 301 QVFKELLVQ 309
           ++F +L+ Q
Sbjct: 156 EIFYDLVRQ 164

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  143 bits (363), Expect = 4e-40
 Identities = 64/275 (23%), Positives = 100/275 (36%), Gaps = 97/275 (35%)

Query: 56  SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDIL 115
                  HK+VV+GG  VGKS++  +F+ + F   Y  TIE+ + +  S++G+  +LDI 
Sbjct: 3   DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDI- 61

Query: 116 DTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCST 175
                                   LD                              T   
Sbjct: 62  ------------------------LD------------------------------TAGQ 67

Query: 176 NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA 235
            EF AMR   + +   F+LV+AI+D  SF E+  +   I   K     P+V+VGNK+DL 
Sbjct: 68  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127

Query: 236 DENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD 295
            + RQV  +      +                                    + EASAK 
Sbjct: 128 SQ-RQVPRSEA--SAF---------GAS--------------------HHVAYFEASAKL 155

Query: 296 NTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPP 330
             N+ + F++L+            +R+ + Q LPP
Sbjct: 156 RLNVDEAFEQLVRA----------VRKYQEQELPP 180

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 10/48 (20%)

Query: 350 DWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPP 397
                + EASAK   N+ + F++L+            +R+ + Q LPP
Sbjct: 143 SHHVAYFEASAKLRLNVDEAFEQLVRA----------VRKYQEQELPP 180

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  136 bits (344), Expect = 2e-37
 Identities = 50/257 (19%), Positives = 85/257 (33%), Gaps = 87/257 (33%)

Query: 62  RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ 121
             K+ ++G   VGKSS+  +F+   F   Y  TIE    +  ++NG    L +       
Sbjct: 6   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQL------- 58

Query: 122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAM 181
                             +D                              T   +E+   
Sbjct: 59  ------------------VD------------------------------TAGQDEYSIF 70

Query: 182 RALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQV 241
                   + +ILVY++    SFE I++I   + +      +PI++VGNK DL  E R +
Sbjct: 71  PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME-RVI 129

Query: 242 DLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301
               G  +           A                      W   F+E+SAK+N     
Sbjct: 130 SYEEG--KAL---------AES--------------------WNAAFLESSAKENQTAVD 158

Query: 302 VFKELLVQAKVKYNLSP 318
           VF+ ++++A+       
Sbjct: 159 VFRRIILEAEKMDGACS 175

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  135 bits (343), Expect = 3e-37
 Identities = 63/268 (23%), Positives = 101/268 (37%), Gaps = 89/268 (33%)

Query: 61  TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120
           T +K+VV+G   VGKS++  + + N F  +Y  TIE+ + +   ++G    LDI      
Sbjct: 3   TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI------ 56

Query: 121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPA 180
                              LD                              T    E+ A
Sbjct: 57  -------------------LD------------------------------TAGQEEYSA 67

Query: 181 MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQ 240
           MR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNK DL   +R 
Sbjct: 68  MRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL--PSRT 125

Query: 241 VDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300
           VD      Q           A                      +   F+E SAK    + 
Sbjct: 126 VDTKQA--QDL---------ARS--------------------YGIPFIETSAKTRQGVD 154

Query: 301 QVFKELLVQ-AKVKYNLSPALRRRRRQS 327
             F  L+ +  K K  +S   ++++++S
Sbjct: 155 DAFYTLVREIRKHKEKMSKDGKKKKKKS 182

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  132 bits (336), Expect = 1e-36
 Identities = 57/247 (23%), Positives = 88/247 (35%), Gaps = 88/247 (35%)

Query: 61  TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE 120
           T +K+VV+G   VGKS++  + + N F  +   TIE+ + +   ++G    LDI      
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDI------ 55

Query: 121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPA 180
                              LD                              T    E+ A
Sbjct: 56  -------------------LD------------------------------TAGQEEYSA 66

Query: 181 MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQ 240
           MR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGNKSDL    R 
Sbjct: 67  MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL--AART 124

Query: 241 VDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300
           V+      Q           A                      +   ++E SAK    + 
Sbjct: 125 VESRQA--QDL---------ARS--------------------YGIPYIETSAKTRQGVE 153

Query: 301 QVFKELL 307
             F  L+
Sbjct: 154 DAFYTLV 160

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  134 bits (340), Expect = 1e-36
 Identities = 55/280 (19%), Positives = 99/280 (35%), Gaps = 87/280 (31%)

Query: 55  SSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDI 114
             +     HKV+++G   VGKS++  +F+Y+ F   Y+ T  + + +   ++G  +++DI
Sbjct: 7   KGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDI 66

Query: 115 LDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCS 174
                                    LD                              T  
Sbjct: 67  -------------------------LD------------------------------TAG 71

Query: 175 TNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDL 234
             ++ A+R     S + F+ V++I +  SF      R+ I   K    VP ++VGNKSDL
Sbjct: 72  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131

Query: 235 ADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294
            D+ RQV +                 A Q                    W   +VE SAK
Sbjct: 132 EDK-RQVSVEEA-----------KNRAEQ--------------------WNVNYVETSAK 159

Query: 295 DNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHS 334
              N+ +VF +L+ + + +       +  +++     +  
Sbjct: 160 TRANVDKVFFDLMREIRARKMEDSKEKNGKKKRKSLAKRI 199

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  132 bits (334), Expect = 5e-36
 Identities = 54/269 (20%), Positives = 90/269 (33%), Gaps = 88/269 (32%)

Query: 46  SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
              S   S     +   +K+VV+G   VGKS++  +F    F   Y  TIE+ + +   +
Sbjct: 2   PLGSMATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEI 61

Query: 106 NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSK 165
           +     LD+                         LD                        
Sbjct: 62  DNQWAILDV-------------------------LD------------------------ 72

Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
                 T    EF AMR   + + D F++VY++ D  SFE +      I   K   + P+
Sbjct: 73  ------TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 126

Query: 226 VVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWE 285
           ++V NK DL    R+V    G  +           A +                    + 
Sbjct: 127 ILVANKVDLMHL-RKVTRDQG--KEM---------ATK--------------------YN 154

Query: 286 NGFVEASAKDNT-NITQVFKELLVQAKVK 313
             ++E SAKD   N+ + F +L+   + +
Sbjct: 155 IPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  125 bits (316), Expect = 2e-33
 Identities = 44/269 (16%), Positives = 87/269 (32%), Gaps = 92/269 (34%)

Query: 48  SSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNG 107
           SS  E+   +G      + ++G    GKS++  +FL   F  +Y   +E+ +  + +++ 
Sbjct: 8   SSGRENLYFQG-PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDH 66

Query: 108 VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLT 167
             + L +                         +D                          
Sbjct: 67  QPVHLRV-------------------------MD-------------------------- 75

Query: 168 SLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA--VPI 225
               T   +         ++ A AF++VY++D   SF+      + +      T   +P 
Sbjct: 76  ----TADLDTPRNCE-RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPA 130

Query: 226 VVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWE 285
           +++GNK D+A   RQV    G              A +                    + 
Sbjct: 131 LLLGNKLDMAQY-RQVTKAEG-----------VALAGR--------------------FG 158

Query: 286 NGFVEASAKDN-TNITQVFKELLVQAKVK 313
             F E SA  +  ++  VF E + +A+ +
Sbjct: 159 CLFFEVSACLDFEHVQHVFHEAVREARRE 187

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  121 bits (307), Expect = 1e-32
 Identities = 46/262 (17%), Positives = 84/262 (32%), Gaps = 98/262 (37%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS 122
           +KV+++G P VGKS++   F                +     ++G    L +        
Sbjct: 3   YKVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMV-------- 53

Query: 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR 182
                             D                                  +    + 
Sbjct: 54  -----------------YD------------------------------IWEQDGGRWLP 66

Query: 183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
              ++  DA+++VY++ D  SFE+   +R  +   + +  VPI++VGNKSDL    R+V 
Sbjct: 67  GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS-REVS 125

Query: 243 LTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV 302
           +  G             CA                      ++  F+E SA  + N+  +
Sbjct: 126 VDEG-----------RACAVV--------------------FDCKFIETSAALHHNVQAL 154

Query: 303 FKELLVQAKVKYNLSPALRRRR 324
           F+ ++ Q          +R RR
Sbjct: 155 FEGVVRQ----------IRLRR 166

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  118 bits (299), Expect = 2e-31
 Identities = 42/268 (15%), Positives = 80/268 (29%), Gaps = 107/268 (39%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNGVHLKLDILDT 117
            KV+++G   VGKS++   F        ++    E    D       ++   + L +   
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSE----DTYERRIMVDKEEVTLIV--- 55

Query: 118 SGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNE 177
                                  D                                   +
Sbjct: 56  ----------------------YD------------------------------IWEQGD 63

Query: 178 FPA-MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
               ++   + + DAF++V+++ D  SF ++      +   +    +P+++VGNKSDLA 
Sbjct: 64  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123

Query: 237 ENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296
             R+V L  G              A  +                        +E SA  +
Sbjct: 124 S-REVSLEEG-----------RHLAGTL-SCK-------------------HIETSAALH 151

Query: 297 TNITQVFKELLVQAKVKYNLSPALRRRR 324
            N  ++F+  + Q          +R RR
Sbjct: 152 HNTRELFEGAVRQ----------IRLRR 169

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  108 bits (271), Expect = 3e-27
 Identities = 50/264 (18%), Positives = 97/264 (36%), Gaps = 84/264 (31%)

Query: 46  SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
            + S +   SSE  +T ++VV++G   VGKS++ +      F+  +     +        
Sbjct: 21  QSMSTDSVISSESGNTYYRVVLIGEQGVGKSTLANI-----FAGVHDSMDSD-------- 67

Query: 106 NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSK 165
                     +  GE + +           +   +D         +       D+     
Sbjct: 68  ---------CEVLGEDTYE-----------RTLMVD--------GESATIILLDMW---- 95

Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPI 225
                     NE+  +    +   DA+++VY+I D  SFE+   +R  +   + +  +PI
Sbjct: 96  -----ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 148

Query: 226 VVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWE 285
           ++VGNKSDL    R+V ++ G             CA                      ++
Sbjct: 149 ILVGNKSDLVRC-REVSVSEG-----------RACAVV--------------------FD 176

Query: 286 NGFVEASAKDNTNITQVFKELLVQ 309
             F+E SA    N+ ++F+ ++ Q
Sbjct: 177 CKFIETSAAVQHNVKELFEGIVRQ 200

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  108 bits (271), Expect = 4e-27
 Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 32/138 (23%)

Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T   +E+  +    I     ++LVY++   +SF+ I  +   + E    T VP+V+VGNK
Sbjct: 79  TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNK 138

Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
           +DL+ E R+V    G  +           A                      W   F+E+
Sbjct: 139 ADLSPE-REVQAVEG--KKL---------AES--------------------WGATFMES 166

Query: 292 SAKDNTNITQVFKELLVQ 309
           SA++N     +F +++ +
Sbjct: 167 SARENQLTQGIFTKVIQE 184

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 69.5 bits (171), Expect = 7e-14
 Identities = 22/74 (29%), Positives = 37/74 (50%)

Query: 46  SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
           S+  EN            KVV++G   VGK+S+ H+F+   FS  Y  T+E  + +  ++
Sbjct: 8   SSGRENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTL 67

Query: 106 NGVHLKLDILDTSG 119
                 L ++DT+G
Sbjct: 68  GKDEFHLHLVDTAG 81

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  106 bits (267), Expect = 5e-27
 Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 32/138 (23%)

Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    ++ A+R     S + F+ V++I +  SF      R+ I   K    VP ++VGNK
Sbjct: 59  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 118

Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
           SDL D+ RQV +     +           A Q                    W   +VE 
Sbjct: 119 SDLEDK-RQVSVEEA--KNR---------ADQ--------------------WNVNYVET 146

Query: 292 SAKDNTNITQVFKELLVQ 309
           SAK   N+ +VF +L+ +
Sbjct: 147 SAKTRANVDKVFFDLMRE 164

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 67.1 bits (165), Expect = 3e-13
 Identities = 20/57 (35%), Positives = 38/57 (66%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
           HKV+++G   VGKS++  +F+Y+ F   Y+ T  + + +   ++G  +++DILDT+G
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 61

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  104 bits (263), Expect = 3e-26
 Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 32/138 (23%)

Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    ++ A+R     S + F+ V++I +  SF      R+ I   K    VP ++VGNK
Sbjct: 73  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 132

Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
           SDL D+ RQV +     +           A Q                    W   +VE 
Sbjct: 133 SDLEDK-RQVSVEEA--KNR---------AEQ--------------------WNVNYVET 160

Query: 292 SAKDNTNITQVFKELLVQ 309
           SAK   N+ +VF +L+ +
Sbjct: 161 SAKTRANVDKVFFDLMRE 178

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 69.5 bits (171), Expect = 7e-14
 Identities = 22/67 (32%), Positives = 41/67 (61%)

Query: 53  SGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKL 112
            G S+     HKV+++G   VGKS++  +F+Y+ F   Y+ T  + + +   ++G  +++
Sbjct: 9   GGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQI 68

Query: 113 DILDTSG 119
           DILDT+G
Sbjct: 69  DILDTAG 75

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  103 bits (260), Expect = 6e-26
 Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 42/151 (27%)

Query: 177 EFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
           +    +   +    A+++VY+I D  SFE    +R  +  T  +  VPI++VGNK+DLA 
Sbjct: 66  DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125

Query: 237 ENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296
             R+V +  G             CA                      ++  F+E SA   
Sbjct: 126 C-REVSVEEG-----------RACAVV--------------------FDCKFIETSATLQ 153

Query: 297 TNITQVFKELLVQAKVKYNLSPALRRRRRQS 327
            N+ ++F+ ++ Q          LR RRR S
Sbjct: 154 HNVAELFEGVVRQ----------LRLRRRDS 174

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 62.9 bits (154), Expect = 1e-11
 Identities = 14/57 (24%), Positives = 31/57 (54%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
           ++VV++G P VGK+S+   F        +++  E+++    +++G    L ++DT  
Sbjct: 5   YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWE 61

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  103 bits (259), Expect = 9e-26
 Identities = 37/136 (27%), Positives = 53/136 (38%), Gaps = 33/136 (24%)

Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T    E+ AMR   + + + F+ V+AI++  SF +I L R+ I   K S  VP+V+VGNK
Sbjct: 76  TAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNK 135

Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
            DL    R VD                  A                      +   F+E 
Sbjct: 136 CDL--PTRTVDTKQA--HEL---------AKS--------------------YGIPFIET 162

Query: 292 SAKDNTNITQVFKELL 307
           SAK    +   F  L+
Sbjct: 163 SAKTRQGVEDAFYTLV 178

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 66.1 bits (162), Expect = 9e-13
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 48  SSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNG 107
           SS  E+   +G  T +K+VV+G   VGKS++  + + N F  +Y  TIE+ + +   ++G
Sbjct: 8   SSGRENLYFQG-MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG 66

Query: 108 VHLKLDILDTSG 119
               LDILDT+G
Sbjct: 67  ETCLLDILDTAG 78

>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7 Length = 162

 Score =  101 bits (252), Expect = 3e-25
 Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 12/127 (9%)

Query: 396 PPVQHSPN-------PSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDE-IVPST 447
                 PN        SLK +G++ E F W   Y+Y+  +G E L+  L I  + ++P T
Sbjct: 32  HEETGVPNLHCYILVRSLKDRGFLEEIFNWGFTYYYLNKEGCEYLKTKLGISADNVIPKT 91

Query: 448 LKRQARTTDASKVP---RQMTQRPDGGRGAD-DRMSYRKGPQGVDKKADVGAGSTEVEFK 503
            K       + +     R   Q   GGR  + D  + R   +G  ++ +  A        
Sbjct: 92  FKASNVNFISKEEDEEERPRRQFNKGGRTGERDGRNKRGVGRGTRREGEEAAKEEGAAET 151

Query: 504 GYGGLAS 510
             G   +
Sbjct: 152 AQGNQET 158

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  102 bits (256), Expect = 3e-25
 Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 33/132 (25%)

Query: 177 EFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
           E    R   +   + F+LVY I D  SFEE+  +++ + E K    V +++VGNK+DL  
Sbjct: 87  EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 146

Query: 237 ENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296
             RQV    G              A +                        F E SA   
Sbjct: 147 S-RQVSTEEG-----------EKLATE--------------------LACAFYECSACTG 174

Query: 297 -TNITQVFKELL 307
             NIT++F EL 
Sbjct: 175 EGNITEIFYELC 186

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 74.2 bits (183), Expect = 2e-15
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 39  NRILNLVSASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEM 98
           +   + V   +EN    S       K+ + G   VGKS+++ RFL   F  +Y  T+E  
Sbjct: 5   HHHSSGVDLGTENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLEST 64

Query: 99  HHEDFSMNGVHLKLDILDTSG-EQS 122
           +    +++   + ++ILDT+G E +
Sbjct: 65  YRHQATIDDEVVSMEILDTAGQEDT 89

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 97.8 bits (244), Expect = 1e-23
 Identities = 31/152 (20%), Positives = 62/152 (40%), Gaps = 37/152 (24%)

Query: 181 MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQ 240
           +    +   DA+++VY+I D  SFE+   +R  +   + +  +PI++VGNKSDL      
Sbjct: 73  LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXR-- 130

Query: 241 VDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300
                                        +V      +     ++  F+E SA    N+ 
Sbjct: 131 -----------------------------EVSVSEGRAXAV-VFDXKFIETSAAVQHNVK 160

Query: 301 QVFKELLVQAKVKYNLSPALRRR-----RRQS 327
           ++F+ ++ Q +++ +      RR     R++S
Sbjct: 161 ELFEGIVRQVRLRRDSKEKNERRLAYQKRKES 192

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 57  EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKR--TIEEMHHEDFSMNG---VHLK 111
           E   T ++VV++G   VGKS++ + F     S         E+ +     ++G     + 
Sbjct: 1   EFGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL 60

Query: 112 LDILDTSGE 120
           LD+ +  GE
Sbjct: 61  LDMWENKGE 69

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 350 DWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRR-----RRQS 394
            ++  F+E SA    N+ ++F+ ++ Q +++ +      RR     R++S
Sbjct: 143 VFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRKES 192

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 97.3 bits (243), Expect = 2e-23
 Identities = 29/144 (20%), Positives = 58/144 (40%), Gaps = 33/144 (22%)

Query: 177 EFPA-MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA 235
           +    +R   + + DAF++V+++ D  SF ++      +   +    +P+++VGNKSDLA
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143

Query: 236 DENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD 295
              R+V L  G              A  +                        +E SA  
Sbjct: 144 RS-REVSLEEG-----------RHLAGTL-SCK-------------------HIETSAAL 171

Query: 296 NTNITQVFKELLVQAKVKYNLSPA 319
           + N  ++F+  + Q +++   + A
Sbjct: 172 HHNTRELFEGAVRQIRLRRGRNHA 195

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 67.6 bits (166), Expect = 3e-13
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 10/78 (12%)

Query: 48  SSENESGSSEG-HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF--- 103
           SS  E+   +G  D   KV+++G   VGKS++   F        ++        ED    
Sbjct: 8   SSGRENLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENP----EDTYER 63

Query: 104 --SMNGVHLKLDILDTSG 119
              ++   + L + D   
Sbjct: 64  RIMVDKEEVTLVVYDIWE 81

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 94.9 bits (237), Expect = 8e-23
 Identities = 20/136 (14%), Positives = 48/136 (35%), Gaps = 36/136 (26%)

Query: 177 EFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
           E            DA + V++++D  SF+ +      +   + ++ VP+V+VG +  ++ 
Sbjct: 79  ELQFAA-----WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 237 EN-RQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD 295
            N R +D +    +           +  +                       + E  A  
Sbjct: 134 ANPRVIDDSRA--RKL---------STDLKRCT-------------------YYETCATY 163

Query: 296 NTNITQVFKELLVQAK 311
             N+ +VF+++  +  
Sbjct: 164 GLNVERVFQDVAQKVV 179

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
            KV ++G    GKS+++HR+L  T+  +          ++  ++G    L I D  G
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEES-PEGGRFKKEIVVDGQSYLLLIRDEGG 76

>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K Length = 105

 Score = 86.5 bits (214), Expect = 9e-21
 Identities = 24/52 (46%), Positives = 36/52 (69%)

Query: 405 SLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTD 456
           SL SKG+V  QF+W++YY+ +T +G+E LR  LN+P+ IVP T  ++   T 
Sbjct: 48  SLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERNPTQ 99

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 86.6 bits (214), Expect = 3e-19
 Identities = 40/251 (15%), Positives = 74/251 (29%), Gaps = 47/251 (18%)

Query: 69  GGPKVGKSSIIHRFL---YNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKG 125
           G   +GKS + +RF+    + F   +   +         +N  H       +   +    
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 126 LKCGAVLWGPKKWGLDK-VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCS-----TNEFP 179
            K    +    ++  D+     R+   +P   +      +    L   C+       +F 
Sbjct: 95  CKM--HIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFE 152

Query: 180 AMRALSIS-SADAFILVYAI--DDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD 236
             +        D F+L   +      +F++      +++   A T  PIVVV  K D   
Sbjct: 153 QKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGV 212

Query: 237 ENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN 296
           E R +        +    L                                 VE SA+ N
Sbjct: 213 E-RYIRDAHTFALSK-KNLQ-------------------------------VVETSARSN 239

Query: 297 TNITQVFKELL 307
            N+   F  L+
Sbjct: 240 VNVDLAFSTLV 250

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 85.5 bits (212), Expect = 3e-19
 Identities = 52/281 (18%), Positives = 89/281 (31%), Gaps = 91/281 (32%)

Query: 54  GSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLD 113
           GS        K V +G   VGK+ ++  +  N F   Y  T+ +    + +++G  + L 
Sbjct: 1   GSHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLG 60

Query: 114 ILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTC 173
           + DT+G++    L                         RP++Y                 
Sbjct: 61  LWDTAGQEDYSRL-------------------------RPLSY----------------- 78

Query: 174 STNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKASTAVPIVVV 228
                          AD F+L +++    S+E +       +R        +  VPIV+V
Sbjct: 79  -------------RGADIFVLAFSLISKASYENVLKKWMPELRRF------APNVPIVLV 119

Query: 229 GNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGF 288
           G K DL D+   +        T   G        QI                       +
Sbjct: 120 GTKLDLRDDKGYLADHTNVI-TSTQGE---ELRKQIGAAA-------------------Y 156

Query: 289 VEASAKDNTNITQVFKELLVQA--KVKYNLSPALRRRRRQS 327
           +E S+K   N+  VF   +       +    P  R+  R+S
Sbjct: 157 IECSSKTQQNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRS 197

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 82.1 bits (203), Expect = 4e-18
 Identities = 45/262 (17%), Positives = 91/262 (34%), Gaps = 76/262 (29%)

Query: 45  VSASSENESGSSEGHDTRH-KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF 103
           +        G + G + R  K V++G   VGK+S++  +  N +  +Y  T  +      
Sbjct: 2   MGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVV 61

Query: 104 SMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLP 163
           S++G  ++L + DT+G+                    DK+        RP+ Y       
Sbjct: 62  SVDGRPVRLQLCDTAGQDE-----------------FDKL--------RPLCY------- 89

Query: 164 SKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV 223
                                  ++ D F+L +++  P+SF+ +                
Sbjct: 90  -----------------------TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK-A 125

Query: 224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD 283
           PI++VG +SDL ++ + +       +                     VP +  + + +  
Sbjct: 126 PIILVGTQSDLREDVKVLIELDKCKEKP-------------------VPEEAAKLLAEEI 166

Query: 284 WENGFVEASAKDNTNITQVFKE 305
               ++E SA    N+ +VF  
Sbjct: 167 KAASYIECSALTQKNLKEVFDA 188

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 80.8 bits (200), Expect = 9e-18
 Identities = 41/269 (15%), Positives = 77/269 (28%), Gaps = 95/269 (35%)

Query: 47  ASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMN 106
           +     +G  E      K+VV+G   VGK+ ++  F        Y  T+ E         
Sbjct: 8   SDMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYK 67

Query: 107 GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKL 166
                L + DT+G++    L                         RP++Y          
Sbjct: 68  NEEFILHLWDTAGQEEYDRL-------------------------RPLSY---------- 92

Query: 167 TSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKAST 221
                               + +D  +L +A+++  SF+ I       I+ +        
Sbjct: 93  --------------------ADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY------ID 126

Query: 222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ 281
               V+VG K DL  +            T   G        ++                 
Sbjct: 127 TAKTVLVGLKVDLRKDGSD-------DVTKQEGD---DLCQKLGCV-------------- 162

Query: 282 VDWENGFVEASAKDNTNITQVFKELLVQA 310
                 ++EAS+     + +VF++ +   
Sbjct: 163 -----AYIEASSVAKIGLNEVFEKSVDCI 186

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 80.0 bits (198), Expect = 1e-17
 Identities = 21/156 (13%), Positives = 47/156 (30%), Gaps = 49/156 (31%)

Query: 177 EFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA----VPIVVVGNKS 232
           +           ADA I V++++D NSF+ +  +   +   +        + +V   ++ 
Sbjct: 66  DAKFSG-----WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120

Query: 233 DLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEAS 292
             +   R V                                    ++        + E  
Sbjct: 121 SASSP-RVVG------------------------------DARARALXADMKRCSYYETX 149

Query: 293 AKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSL 328
           A    N+ +VF+E+  +          +  R++Q L
Sbjct: 150 ATYGLNVDRVFQEVAQK---------VVTLRKQQQL 176

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
            ++ V+G  + GKSS+IHRFL  ++    ++T  E + ++  ++G    + I + +G
Sbjct: 8   LRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIREEAG 63

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 80.2 bits (198), Expect = 1e-17
 Identities = 51/263 (19%), Positives = 88/263 (33%), Gaps = 85/263 (32%)

Query: 48  SSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNG 107
           SS      S     R K+V++G    GK+ ++  F  + F   Y  T+ E +  D  ++G
Sbjct: 11  SSGLVPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDG 70

Query: 108 VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLT 167
             ++L + DT+G++    L                         RP++Y           
Sbjct: 71  KQVELALWDTAGQEDYDRL-------------------------RPLSY----------- 94

Query: 168 SLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKASTA 222
                                 D  ++ ++ID P+S E I       ++           
Sbjct: 95  -------------------PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF------CPN 129

Query: 223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV 282
           VPI++VGNK DL  +           Q  +        A++IS                 
Sbjct: 130 VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAF--------------- 174

Query: 283 DWENGFVEASAKDNTNITQVFKE 305
               G++E SAK    + +VF+ 
Sbjct: 175 ----GYLECSAKTKEGVREVFEM 193

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 79.0 bits (195), Expect = 5e-17
 Identities = 49/269 (18%), Positives = 89/269 (33%), Gaps = 88/269 (32%)

Query: 42  LNLVSASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHE 101
            + V   +EN    S     R K+VV+G    GK+ ++  F  + F   Y  T+ E +  
Sbjct: 8   SSGVDLGTENLYFQSM---IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA 64

Query: 102 DFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQ 161
           D  ++G  ++L + DT+G++                   D++        RP++Y     
Sbjct: 65  DIEVDGKQVELALWDTAGQE-----------------DYDRL--------RPLSY----- 94

Query: 162 LPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFE 216
                                       D  ++ +++D P+S E I       ++     
Sbjct: 95  -------------------------PDTDVILMCFSVDSPDSLENIPEKWVPEVKHF--- 126

Query: 217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTT 276
                 VPI++V NK DL  +           Q                     V  D  
Sbjct: 127 ---CPNVPIILVANKKDLRSDEHVRTELARMKQEP-------------------VRTDDG 164

Query: 277 ESVVQVDWENGFVEASAKDNTNITQVFKE 305
            ++        ++E SAK    + +VF+ 
Sbjct: 165 RAMAVRIQAYDYLECSAKTKEGVREVFET 193

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 79.0 bits (195), Expect = 5e-17
 Identities = 45/266 (16%), Positives = 85/266 (31%), Gaps = 85/266 (31%)

Query: 45  VSASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFS 104
                 +   +        K VV+G   VGK+ ++  +  N F  +Y  T+ + +  +  
Sbjct: 13  GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 72

Query: 105 MNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPS 164
           ++G  + L + DT+G++    L                         RP++Y        
Sbjct: 73  VDGKPVNLGLWDTAGQEDYDRL-------------------------RPLSY-------- 99

Query: 165 KLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKA 219
                                    D F++ +++  P SFE +R      +R H      
Sbjct: 100 ----------------------PQTDVFLICFSLVSPASFENVRAKWYPEVRHH------ 131

Query: 220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESV 279
               PI++VG K DL D+   ++       T                    + Y    ++
Sbjct: 132 CPNTPIILVGTKLDLRDDKDTIEKLKEKKLT-------------------PITYPQGLAM 172

Query: 280 VQVDWENGFVEASAKDNTNITQVFKE 305
            +      ++E SA     +  VF E
Sbjct: 173 AKEIGAVKYLECSALTQRGLKTVFDE 198

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 78.2 bits (193), Expect = 6e-17
 Identities = 49/248 (19%), Positives = 82/248 (33%), Gaps = 89/248 (35%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSG 123
           K V +G   VGK+ ++  +  NTF   Y  T+ +    +  +NG  + L + DT+G++  
Sbjct: 10  KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDY 69

Query: 124 KGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA 183
             L                         RP++Y                           
Sbjct: 70  NRL-------------------------RPLSY--------------------------- 77

Query: 184 LSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKASTAVPIVVVGNKSDL-ADE 237
                AD FIL +++    S+E +       ++ +      +  VPIV+VG K DL  D+
Sbjct: 78  ---RGADVFILAFSLISKASYENVSKKWIPELKHY------APGVPIVLVGTKLDLRDDK 128

Query: 238 NRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT 297
              +D  G    T + G         I                       ++E S+K   
Sbjct: 129 QFFIDHPGAVPITTVQGEE---LKKLIGAP-------------------AYIECSSKSQE 166

Query: 298 NITQVFKE 305
           N+  VF  
Sbjct: 167 NVKGVFDA 174

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 77.2 bits (190), Expect = 2e-16
 Identities = 41/265 (15%), Positives = 87/265 (32%), Gaps = 85/265 (32%)

Query: 46  SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
           S  +   S +        K VV+G   VGK+ ++  +  + F  +Y  T+ + +    ++
Sbjct: 2   SPGAGRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTV 61

Query: 106 NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSK 165
            G    L + DT+G++    L                         RP++Y         
Sbjct: 62  GGKQYLLGLYDTAGQEDYDRL-------------------------RPLSY--------- 87

Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKAS 220
                                   D F++ +++ +P SF+ ++      ++++      +
Sbjct: 88  ---------------------PMTDVFLICFSVVNPASFQNVKEEWVPELKEY------A 120

Query: 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVV 280
             VP +++G + DL D+ + +       +  +        A +I                
Sbjct: 121 PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC------------- 167

Query: 281 QVDWENGFVEASAKDNTNITQVFKE 305
                  +VE SA     +  VF E
Sbjct: 168 ------CYVECSALTQKGLKTVFDE 186

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 77.5 bits (191), Expect = 2e-16
 Identities = 51/272 (18%), Positives = 86/272 (31%), Gaps = 91/272 (33%)

Query: 45  VSASSEN------ESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEM 98
           V   +EN          +       KVV++G    GK+S++  F    F   Y  T+ E 
Sbjct: 11  VDLGTENLYFQSMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER 70

Query: 99  HHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKT 158
           +  +  + G  + L I DT+G+                    D++        RP+ Y  
Sbjct: 71  YMVNLQVKGKPVHLHIWDTAGQDD-----------------YDRL--------RPLFY-- 103

Query: 159 DVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDH 213
                                         A   +L + +  PNSF+ I       +   
Sbjct: 104 ----------------------------PDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF 135

Query: 214 IFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPY 273
                    VPI+VVG K+DL  +   V+                            V Y
Sbjct: 136 ------CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEP-------------------VTY 170

Query: 274 DTTESVVQVDWENGFVEASAKDNTNITQVFKE 305
              + + +      ++E SA+ + N+  VF+E
Sbjct: 171 HRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 76.8 bits (189), Expect = 3e-16
 Identities = 43/254 (16%), Positives = 78/254 (30%), Gaps = 63/254 (24%)

Query: 59  HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTS 118
             + +K V++G   VGKSSI+ R   +TF      TI           G      +++ +
Sbjct: 4   KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTI-----------GASFCTYVVNLN 52

Query: 119 GEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEF 178
                K                D   +    +        +++       +  T     +
Sbjct: 53  DINI-KNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKF-----DIWDTAGQERY 106

Query: 179 PAMRALSIS---SADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA 235
               ++       A   I+V+ I + N+ +  +     + + K S+   I++V NK D  
Sbjct: 107 ---ASIVPLYYRGATCAIVVFDISNSNTLDRAK---TWVNQLKISSNYIIILVANKIDK- 159

Query: 236 DENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASA 293
               QV                                     V +   +N   F++ SA
Sbjct: 160 -NKFQV---------------------------------DILEVQKYAQDNNLLFIQTSA 185

Query: 294 KDNTNITQVFKELL 307
           K  TNI  +F  L 
Sbjct: 186 KTGTNIKNIFYMLA 199

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 75.2 bits (185), Expect = 1e-15
 Identities = 47/266 (17%), Positives = 87/266 (32%), Gaps = 86/266 (32%)

Query: 46  SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
           S      S      + + K+VV+G  + GK++++H F  + F   Y  T+ E +   F +
Sbjct: 12  SGLVPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEI 71

Query: 106 NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSK 165
           +   ++L + DTSG                     D V        RP++Y         
Sbjct: 72  DTQRIELSLWDTSGSPY-----------------YDNV--------RPLSY--------- 97

Query: 166 LTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKAS 220
                                  +DA ++ + I  P + + +       I++        
Sbjct: 98  ---------------------PDSDAVLICFDISRPETLDSVLKKWKGEIQEF------C 130

Query: 221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVV 280
               +++VG KSDL  +   +       QT +S    +  A QI                
Sbjct: 131 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAA------------- 177

Query: 281 QVDWENGFVEASAKDNTN-ITQVFKE 305
                  ++E SA  + N +  +F  
Sbjct: 178 ------TYIECSALQSENSVRDIFHV 197

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 72.2 bits (178), Expect = 5e-15
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 41/134 (30%)

Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
           AD  +LVY + + +SFE I+        H     +    P V++GNK D  +  + V   
Sbjct: 82  ADCCVLVYDVTNASSFENIKSWRDEFLVHA-NVNSPETFPFVILGNKIDAEESKKIV--- 137

Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG---FVEASAKDNTNITQ 301
                                         + +S  ++    G       SAK+  N+  
Sbjct: 138 ------------------------------SEKSAQELAKSLGDIPLFLTSAKNAINVDT 167

Query: 302 VFKELLVQAKVKYN 315
            F+E+   A  +  
Sbjct: 168 AFEEIARSALQQNQ 181

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 10/70 (14%)

Query: 56  SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHL----- 110
           S       KV+++G   VGK+S++HR++ + +S +YK TI      DF    V +     
Sbjct: 2   SSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATI----GADFLTKEVTVDGDKV 57

Query: 111 -KLDILDTSG 119
             + + DT+G
Sbjct: 58  ATMQVWDTAG 67

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 70.6 bits (173), Expect = 3e-14
 Identities = 45/253 (17%), Positives = 83/253 (32%), Gaps = 85/253 (33%)

Query: 58  GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDT 117
           G     K VV+G   VGK+ ++  +  N F  +Y  T+ + +  +  ++G  + L + DT
Sbjct: 1   GSPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 60

Query: 118 SGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNE 177
           +G++    L                         RP++Y                     
Sbjct: 61  AGQEDYDRL-------------------------RPLSY--------------------- 74

Query: 178 FPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKASTAVPIVVVGNKS 232
                       D  ++ +++  P SFE +R      +R H          PI++VG K 
Sbjct: 75  ---------PQTDVSLICFSLVSPASFENVRAKWYPEVRHH------CPNTPIILVGTKL 119

Query: 233 DLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEAS 292
           DL D+   ++       T                    + Y    ++ +      ++E S
Sbjct: 120 DLRDDKDTIEKLKEKKLT-------------------PITYPQGLAMAKEIGAVKYLECS 160

Query: 293 AKDNTNITQVFKE 305
           A     +  VF E
Sbjct: 161 ALTQRGLKTVFDE 173

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 70.1 bits (172), Expect = 4e-14
 Identities = 43/252 (17%), Positives = 84/252 (33%), Gaps = 86/252 (34%)

Query: 60  DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
           + + K+VV+G  + GK++++H F  + F   Y  T+ E +   F ++   ++L + DTSG
Sbjct: 5   NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG 64

Query: 120 EQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFP 179
                 +                         RP++Y                       
Sbjct: 65  SPYYDNV-------------------------RPLSYP---------------------- 77

Query: 180 AMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFETKASTAVPIVVVGNKSDL 234
                    +DA ++ + I  P + + +       I++            +++VG KSDL
Sbjct: 78  --------DSDAVLICFDISRPETLDSVLKKWKGEIQEF------CPNTKMLLVGCKSDL 123

Query: 235 ADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK 294
             +   +       QT +S    +  A QI                       ++E SA 
Sbjct: 124 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAA-------------------TYIECSAL 164

Query: 295 DNTN-ITQVFKE 305
            + N +  +F  
Sbjct: 165 QSENSVRDIFHV 176

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 33/205 (16%), Positives = 66/205 (32%), Gaps = 71/205 (34%)

Query: 48  SSENESGSSEGHDT-----RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHED 102
           SS  E+   +G        R K+V++G  + GK++++     + +   Y  T+ E +   
Sbjct: 8   SSGRENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAC 67

Query: 103 FSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQL 162
                  ++L + DTSG      +                         RP+ Y      
Sbjct: 68  LETEEQRVELSLWDTSGSPYYDNV-------------------------RPLCY------ 96

Query: 163 PSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL-----IRDHIFET 217
                                   S +DA +L + I  P + +         I D+    
Sbjct: 97  ------------------------SDSDAVLLCFDISRPETVDSALKKWRTEILDY---- 128

Query: 218 KASTAVPIVVVGNKSDLADENRQVD 242
               +  ++++G K+DL  +   + 
Sbjct: 129 --CPSTRVLLIGCKTDLRTDLSTLM 151

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 67.2 bits (165), Expect = 3e-13
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 43/134 (32%)

Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
           +D  +L +++DD  SF+ +         +  + K   + P V++GNK D+    RQV   
Sbjct: 80  SDCCLLTFSVDDSQSFQNLSNWKKEFIYYA-DVKEPESFPFVILGNKIDI--SERQV--- 133

Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG---FVEASAKDNTNITQ 301
                                         +TE       +NG   + E SAKD TN+  
Sbjct: 134 ------------------------------STEEAQAWCRDNGDYPYFETSAKDATNVAA 163

Query: 302 VFKELLVQAKVKYN 315
            F+E + +     +
Sbjct: 164 AFEEAVRRVLATED 177

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 9/67 (13%)

Query: 58  GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NGVHLKL 112
           G  +  KV+++G   VGKSS+++R++ N F  +   TI      +F       +G  + +
Sbjct: 3   GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI----GVEFLNKDLEVDGHFVTM 58

Query: 113 DILDTSG 119
            I DT+G
Sbjct: 59  QIWDTAG 65

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 66.5 bits (163), Expect = 8e-13
 Identities = 30/133 (22%), Positives = 45/133 (33%), Gaps = 41/133 (30%)

Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
           AD  +LV+ +  PN+F+ +                    P VV+GNK DL  ENRQV   
Sbjct: 81  ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPEN-FPFVVLGNKIDL--ENRQV--- 134

Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
                                         T  +      +N   + E SAK+  N+ Q 
Sbjct: 135 -----------------------------ATKRAQAWCYSKNNIPYFETSAKEAINVEQA 165

Query: 303 FKELLVQAKVKYN 315
           F+ +   A  +  
Sbjct: 166 FQTIARNALKQET 178

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 9/69 (13%)

Query: 56  SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NGVHL 110
           +       KV+++G   VGK+S++++++   FS +YK TI      DF       +   +
Sbjct: 2   TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI----GADFLTKEVMVDDRLV 57

Query: 111 KLDILDTSG 119
            + I DT+G
Sbjct: 58  TMQIWDTAG 66

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 35/137 (25%), Positives = 52/137 (37%), Gaps = 45/137 (32%)

Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
            A   +LVY I +  SF+ IR     I +H     AS  V  +++GNK D+ D+ RQV  
Sbjct: 80  GAMGIMLVYDITNEKSFDNIRNWIRNIEEH-----ASADVEKMILGNKCDVNDK-RQV-- 131

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
                                          + E   ++  + G  F+E SAK N N+  
Sbjct: 132 -------------------------------SKERGEKLALDYGIKFMETSAKANINVEN 160

Query: 302 VFKELLVQAKVKYNLSP 318
            F  L    K K + + 
Sbjct: 161 AFFTLARDIKAKMDKNW 177

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 48.7 bits (117), Expect = 8e-07
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 9/69 (13%)

Query: 56  SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NGVHL 110
           ++ +D   K++++G   VGK+ ++ RF  + F+  +  TI      DF +     +G  +
Sbjct: 2   AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTI----GIDFKIRTIELDGKRI 57

Query: 111 KLDILDTSG 119
           KL I DT+G
Sbjct: 58  KLQIWDTAG 66

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 64.9 bits (159), Expect = 2e-12
 Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 45/137 (32%)

Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
            A A +L+Y + +  SF+ I+     I ++     A   V ++++GNK D A E R V  
Sbjct: 83  DAHALLLLYDVTNKASFDNIQAWLTEIHEY-----AQHDVALMLLGNKVDSAHE-RVV-- 134

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
                                            E   ++  E G  F+E SAK   N+  
Sbjct: 135 -------------------------------KREDGEKLAKEYGLPFMETSAKTGLNVDL 163

Query: 302 VFKELLVQAKVKYNLSP 318
            F  +  + K +   +P
Sbjct: 164 AFTAIAKELKRRSMKAP 180

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 10/72 (13%)

Query: 54  GSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPK-YKRTIEEMHHEDFSM-----NG 107
              + +D   KV+++G   VGK+ ++ RF    F    +  T+      DF       +G
Sbjct: 2   SGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTV----GIDFRNKVLDVDG 57

Query: 108 VHLKLDILDTSG 119
           V +KL + DT+G
Sbjct: 58  VKVKLQMWDTAG 69

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 64.5 bits (158), Expect = 3e-12
 Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 45/133 (33%)

Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
           A  F+L+Y I +  SF  ++     I+ +     +     +++VGNK DL DE R V   
Sbjct: 95  AMGFLLMYDIANQESFAAVQDWATQIKTY-----SWDNAQVILVGNKCDLEDE-RVV--- 145

Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
                                           E   ++  + G  F EASAK+N N+ QV
Sbjct: 146 ------------------------------PAEDGRRLADDLGFEFFEASAKENINVKQV 175

Query: 303 FKELLVQAKVKYN 315
           F+ L+     K N
Sbjct: 176 FERLVDVICEKMN 188

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 46  SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
                +      G D   K++++G   VGK+S + R+  ++F+P +  T+      DF +
Sbjct: 6   HHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTV----GIDFKV 61

Query: 106 -----NGVHLKLDILDTSG 119
                +   +KL I DT+G
Sbjct: 62  KTVYRHDKRIKLQIWDTAG 80

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 64.1 bits (157), Expect = 3e-12
 Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 38/127 (29%)

Query: 189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPF 248
           A A +LV++  D  SFE I   R+ +   +    +P  +V NK DL  ++  +       
Sbjct: 78  AQACVLVFSTTDRESFEAISSWREKV-VAEVGD-IPTALVQNKIDL-LDDSCI------- 127

Query: 249 QTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQVFKEL 306
                                       E    +       F   S K++ N+++VFK L
Sbjct: 128 --------------------------KNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161

Query: 307 LVQAKVK 313
             +   K
Sbjct: 162 AEKHLQK 168

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 9/67 (13%)

Query: 58  GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNGVHLKL 112
           G +   K+VV+G   VGKSS+I R+    F+  YK+TI      DF      +N   ++L
Sbjct: 1   GSEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTI----GVDFLERQIQVNDEDVRL 56

Query: 113 DILDTSG 119
            + DT+G
Sbjct: 57  MLWDTAG 63

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 64.2 bits (157), Expect = 5e-12
 Identities = 34/131 (25%), Positives = 46/131 (35%), Gaps = 39/131 (29%)

Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
           AD  +L+Y +    SF  IR     I D      A   VPI++VGNK+D+ D        
Sbjct: 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDA-----AHETVPIMLVGNKADIRDTAATEGQK 155

Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
                                     VP    E +       G  F E SAKD +NI + 
Sbjct: 156 -------------------------CVPGHFGEKLAM---TYGALFCETSAKDGSNIVEA 187

Query: 303 FKELLVQAKVK 313
              L  + K +
Sbjct: 188 VLHLAREVKKR 198

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 46  SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
           S      S  S      +K+V+ G   VGKSS + R   N F      T+      DF M
Sbjct: 12  SGLVPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLG----VDFQM 67

Query: 106 -----NGVHLKLDILDTSG 119
                +G    L + DT+G
Sbjct: 68  KTLIVDGERTVLQLWDTAG 86

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 63.8 bits (156), Expect = 6e-12
 Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 40/130 (30%)

Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
           SA   ILVY I    +F+++      I  +     AS    +++VGNK D   + R++  
Sbjct: 98  SAKGIILVYDITKKETFDDLPKWMKMIDKY-----ASEDAELLLVGNKLDCETD-REITR 151

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF 303
             G  + +         A QI+G                     F EASAKDN N+ ++F
Sbjct: 152 QQG--EKF---------AQQITGMR-------------------FCEASAKDNFNVDEIF 181

Query: 304 KELLVQAKVK 313
            +L+     K
Sbjct: 182 LKLVDDILKK 191

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 52.2 bits (126), Expect = 6e-08
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 9/79 (11%)

Query: 46  SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
            +S     GS    D + +V+++G   VGK+S++ RF  +TF    K T+      DF +
Sbjct: 10  HSSGLVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTV----GVDFKI 65

Query: 106 -----NGVHLKLDILDTSG 119
                 G  ++L I DT+G
Sbjct: 66  KTVELRGKKIRLQIWDTAG 84

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 63.3 bits (155), Expect = 6e-12
 Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 46/136 (33%)

Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
            A   ILVY I D  +F  I+     + +H     A+    +++VGNKSD+  E R V  
Sbjct: 75  GAMGIILVYDITDERTFTNIKQWFKTVNEH-----ANDEAQLLLVGNKSDM--ETRVV-- 125

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
                                          T +    +  E G  F+E+SAK++ N+ +
Sbjct: 126 -------------------------------TADQGEALAKELGIPFIESSAKNDDNVNE 154

Query: 302 VFKELLVQAKVKYNLS 317
           +F  L    + K + +
Sbjct: 155 IFFTLAKLIQEKIDSN 170

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 9/61 (14%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NGVHLKLDILDTS 118
           K++++G   VGKS ++ RF+ + F+P +  TI      DF +     NG  +KL I DT+
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTI----GIDFKIKTVDINGKKVKLQIWDTA 60

Query: 119 G 119
           G
Sbjct: 61  G 61

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 63.8 bits (156), Expect = 7e-12
 Identities = 29/131 (22%), Positives = 46/131 (35%), Gaps = 45/131 (34%)

Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
           A   I+VY + D  SF  ++     I  +     AS  V  ++VGNK DL  + + V   
Sbjct: 106 AHGIIVVYDVTDQESFNNVKQWLQEIDRY-----ASENVNKLLVGNKCDLTTK-KVV--- 156

Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
                                            +  +     G  F+E SAK+ TN+ Q 
Sbjct: 157 ------------------------------DYTTAKEFADSLGIPFLETSAKNATNVEQS 186

Query: 303 FKELLVQAKVK 313
           F  +  + K +
Sbjct: 187 FMTMAAEIKKR 197

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 9/80 (11%)

Query: 45  VSASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF- 103
           +       S  +  +D   K++++G   VGKS ++ RF  +T++  Y  TI      DF 
Sbjct: 16  LYFQGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTI----GVDFK 71

Query: 104 ----SMNGVHLKLDILDTSG 119
                ++G  +KL I DT+G
Sbjct: 72  IRTIELDGKTIKLQIWDTAG 91

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 63.8 bits (156), Expect = 8e-12
 Identities = 38/162 (23%), Positives = 57/162 (35%), Gaps = 48/162 (29%)

Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
           A  FIL+Y I +  SF  ++     I+ +     +     +++VGNK D+ DE R V   
Sbjct: 81  AMGFILMYDITNEESFNAVQDWSTQIKTY-----SWDNAQVLLVGNKCDMEDE-RVV--- 131

Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
                                         ++E   Q+    G  F EASAKDN N+ Q 
Sbjct: 132 ------------------------------SSERGRQLADHLGFEFFEASAKDNINVKQT 161

Query: 303 FKELLVQAKVKYNLSPALRRRRRQSL---PPVQHSPNPVPYD 341
           F+ L+     K + S              P +     P   D
Sbjct: 162 FERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQQAPPHQD 203

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 9/69 (13%)

Query: 56  SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NGVHL 110
           S   D   K++++G   VGK+S + R+  ++F+P +  T+      DF +     N   +
Sbjct: 2   SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV----GIDFKVKTIYRNDKRI 57

Query: 111 KLDILDTSG 119
           KL I DT+G
Sbjct: 58  KLQIWDTAG 66

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 45/132 (34%)

Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
            +   I+VY + D  SF  +++    I  +     A++ V  ++VGNK DL D+ R V  
Sbjct: 80  GSHGIIIVYDVTDQESFNGVKMWLQEIDRY-----ATSTVLKLLVGNKCDLKDK-RVV-- 131

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
                                            +   +    N   F+E SA D+TN+  
Sbjct: 132 -------------------------------EYDVAKEFADANKMPFLETSALDSTNVED 160

Query: 302 VFKELLVQAKVK 313
            F  +  Q K  
Sbjct: 161 AFLTMARQIKES 172

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 9/69 (13%)

Query: 56  SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFS-----MNGVHL 110
           +  +D   K++++G   VGKS ++ RF  +T++  Y  TI      DF      ++G  +
Sbjct: 2   NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTI----GVDFKIKTVELDGKTV 57

Query: 111 KLDILDTSG 119
           KL I DT+G
Sbjct: 58  KLQIWDTAG 66

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 63.0 bits (154), Expect = 1e-11
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 45/131 (34%)

Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
           A  FIL+Y I +  SF  ++     I+ +     +     +++VGNK D+ +E R V   
Sbjct: 96  AMGFILMYDITNEESFNAVQDWATQIKTY-----SWDNAQVILVGNKCDMEEE-RVV--- 146

Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
                                          TE    +  + G  F EASAK+N ++ Q 
Sbjct: 147 ------------------------------PTEKGQLLAEQLGFDFFEASAKENISVRQA 176

Query: 303 FKELLVQAKVK 313
           F+ L+     K
Sbjct: 177 FERLVDAICDK 187

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 46  SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
            +S           D   K++++G   VGK+S + R+  +TF+P +  T+      DF +
Sbjct: 7   HSSGRENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTV----GIDFKV 62

Query: 106 -----NGVHLKLDILDTSG 119
                +   +KL I DT+G
Sbjct: 63  KTVYRHEKRVKLQIWDTAG 81

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 62.2 bits (152), Expect = 2e-11
 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 45/125 (36%)

Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
           +   ++VY I + NSF +       +R         + V I++VGNK+DL+D+ RQV   
Sbjct: 87  STVAVVVYDITNTNSFHQTSKWIDDVRTE-----RGSDVIIMLVGNKTDLSDK-RQV--- 137

Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
                                         +TE   +   E    F+E SAK   N+ Q+
Sbjct: 138 ------------------------------STEEGERKAKELNVMFIETSAKAGYNVKQL 167

Query: 303 FKELL 307
           F+ + 
Sbjct: 168 FRRVA 172

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 53  SGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNG 107
           SG       + K+V +G   VGK+S+I RF+Y++F   Y+ TI      DF      +  
Sbjct: 5   SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI----GIDFLSKTMYLED 60

Query: 108 VHLKLDILDTSG 119
             ++L + DT+G
Sbjct: 61  RTVRLQLWDTAG 72

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 29/136 (21%), Positives = 46/136 (33%), Gaps = 45/136 (33%)

Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
           A   I+VY + D  SF  ++     I  +     AS  V  ++VGNK DL  + + V   
Sbjct: 89  AHGIIVVYDVTDQESFNNVKQWLQEIDRY-----ASENVNKLLVGNKCDLTTK-KVV--- 139

Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
                                            +  +     G  F+E SAK+ TN+ Q 
Sbjct: 140 ------------------------------DYTTAKEFADSLGIPFLETSAKNATNVEQS 169

Query: 303 FKELLVQAKVKYNLSP 318
           F  +  + K +     
Sbjct: 170 FMTMAAEIKKRMGPGA 185

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 9/72 (12%)

Query: 53  SGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNG 107
           S  +  +D   K++++G   VGKS ++ RF  +T++  Y  TI      DF      ++G
Sbjct: 7   SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTI----GVDFKIRTIELDG 62

Query: 108 VHLKLDILDTSG 119
             +KL I DT+G
Sbjct: 63  KTIKLQIWDTAG 74

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 61.7 bits (151), Expect = 2e-11
 Identities = 28/125 (22%), Positives = 43/125 (34%), Gaps = 45/125 (36%)

Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
           ++  ILVY I D +SF++++     +R           + + +VGNK DL  E R     
Sbjct: 79  SNGAILVYDITDEDSFQKVKNWVKELRKM-----LGNEICLCIVGNKIDLEKE-R----- 127

Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
                                     V     ES  +     G      SAK N  I ++
Sbjct: 128 -------------------------HVSIQEAESYAE---SVGAKHYHTSAKQNKGIEEL 159

Query: 303 FKELL 307
           F +L 
Sbjct: 160 FLDLC 164

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 9/61 (14%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNGVHLKLDILDTS 118
           KVV++G   VGK+S++ R+  N F+ K+  T+       F     ++ G  + L I DT+
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLG----ASFLTKKLNIGGKRVNLAIWDTA 63

Query: 119 G 119
           G
Sbjct: 64  G 64

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 46/138 (33%)

Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
            A   ILVY + D  +F  I+     + +H     A+    +++VGNKSD+  E R V  
Sbjct: 92  GAMGIILVYDVTDERTFTNIKQWFKTVNEH-----ANDEAQLLLVGNKSDM--ETRVV-- 142

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
                                          T +    +  E G  F+E+SAK++ N+ +
Sbjct: 143 -------------------------------TADQGEALAKELGIPFIESSAKNDDNVNE 171

Query: 302 VFKELLVQAKVKYNLSPA 319
           +F  L    + K + +  
Sbjct: 172 IFFTLAKLIQEKIDSNKL 189

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 9/72 (12%)

Query: 53  SGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NG 107
           SG+ + +D+  K++++G   VGKS ++ RF+ + F+P +  TI      DF +     NG
Sbjct: 11  SGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI----GIDFKIKTVDING 66

Query: 108 VHLKLDILDTSG 119
             +KL + DT+G
Sbjct: 67  KKVKLQLWDTAG 78

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 46/139 (33%)

Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
           A  F+L++ + +  SF  +R     ++ H      S    IV+ GNKSDL D+ R V   
Sbjct: 94  AMGFLLLFDLTNEQSFLNVRNWISQLQMHA----YSENPDIVLCGNKSDLEDQ-RAV--- 145

Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
                                           E   ++  + G  + E SA + TNI+  
Sbjct: 146 ------------------------------KEEEARELAEKYGIPYFETSAANGTNISHA 175

Query: 303 FKELL--VQAKVKYNLSPA 319
            + LL  +  +++ ++  +
Sbjct: 176 IEMLLDLIMKRMERSVDKS 194

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 11/78 (14%)

Query: 53  SGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI-----------EEMHHE 101
           S S   +D   K + +G   VGK+S+++++    F+ K+  T+                +
Sbjct: 2   SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD 61

Query: 102 DFSMNGVHLKLDILDTSG 119
                G  + L + DT+G
Sbjct: 62  GAVGRGQRIHLQLWDTAG 79

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 61.4 bits (150), Expect = 3e-11
 Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 48/128 (37%)

Query: 189 ADAFILVYAIDDPNSFE-------EIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQV 241
           A   +LVY I +  SFE        ++ + +      + T   + +VGNK DL    R +
Sbjct: 80  AQGVLLVYDITNYQSFENLEDWYTVVKKVSEE-----SETQPLVALVGNKIDLEHM-RTI 133

Query: 242 DLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNI 299
                                              E  ++   ENG      SAK   ++
Sbjct: 134 ---------------------------------KPEKHLRFCQENGFSSHFVSAKTGDSV 160

Query: 300 TQVFKELL 307
              F+++ 
Sbjct: 161 FLCFQKVA 168

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 10/67 (14%)

Query: 59  HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHL------KL 112
           H  + K+VV+G    GK+S+   F   TF  +YK+TI      DF +  + L       L
Sbjct: 3   HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTI----GLDFFLRRITLPGNLNVTL 58

Query: 113 DILDTSG 119
            I D  G
Sbjct: 59  QIWDIGG 65

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 28/126 (22%), Positives = 41/126 (32%), Gaps = 45/126 (35%)

Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
            A   +LVY I    +F  +       R H     +S+ + I+++GNKSDL    R V  
Sbjct: 93  GAAGALLVYDITRRETFNHLTSWLEDARQH-----SSSNMVIMLIGNKSDLESR-RDV-- 144

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
                                            E       E+G  F+E SAK   N+ +
Sbjct: 145 -------------------------------KREEGEAFAREHGLIFMETSAKTACNVEE 173

Query: 302 VFKELL 307
            F    
Sbjct: 174 AFINTA 179

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 48.7 bits (117), Expect = 9e-07
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 9/72 (12%)

Query: 53  SGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFS-----MNG 107
           SG         K +++G   VGKS ++ +F    F P +  TI      +F      ++G
Sbjct: 12  SGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI----GVEFGARMVNIDG 67

Query: 108 VHLKLDILDTSG 119
             +KL I DT+G
Sbjct: 68  KQIKLQIWDTAG 79

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 61.6 bits (150), Expect = 5e-11
 Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 48/157 (30%)

Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
           +   ++VY I + NSF++       +R         + V I++VGNK+DLAD+ R     
Sbjct: 89  STVAVVVYDITNVNSFQQTTKWIDDVRTE-----RGSDVIIMLVGNKTDLADK-R----- 137

Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
                                    QV  +  E   +   E    F+E SAK   N+ Q+
Sbjct: 138 -------------------------QVSIEEGERKAK---ELNVMFIETSAKAGYNVKQL 169

Query: 303 FKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPVP 339
           F+ +   A     +     R R   +      P   P
Sbjct: 170 FRRV---AAALPGMESTQDRSREDMIDIKLEKPQEQP 203

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 9/72 (12%)

Query: 53  SGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNG 107
            G       + K+V +G   VGK+S+I RF+Y++F   Y+ TI      DF      +  
Sbjct: 7   GGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG----IDFLSKTMYLED 62

Query: 108 VHLKLDILDTSG 119
             ++L + DT+G
Sbjct: 63  RTVRLQLWDTAG 74

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 61.1 bits (149), Expect = 5e-11
 Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 45/132 (34%)

Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
           SA+A IL Y I    SF  +      I  +     AS  V  V+VGNK DLA+  R+V  
Sbjct: 98  SANALILTYDITCEESFRCLPEWLREIEQY-----ASNKVITVLVGNKIDLAER-REV-- 149

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
                                          + +   +        ++E SAK++ N+ +
Sbjct: 150 -------------------------------SQQRAEEFSEAQDMYYLETSAKESDNVEK 178

Query: 302 VFKELLVQAKVK 313
           +F +L  +   +
Sbjct: 179 LFLDLACRLISE 190

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 46  SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
            +S     GS E +D   K+V++G   VGK+ ++ RF    F P    TI      DF +
Sbjct: 10  HSSGLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI----GVDFMI 65

Query: 106 -----NGVHLKLDILDTSG 119
                NG  +KL I DT+G
Sbjct: 66  KTVEINGEKVKLQIWDTAG 84

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 61.1 bits (149), Expect = 6e-11
 Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 46/133 (34%)

Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
           SA+  IL Y I   +SF  +      +R +     A + +  +++GNKSDL++  R+V  
Sbjct: 101 SANGAILAYDITKRSSFLSVPHWIEDVRKY-----AGSNIVQLLIGNKSDLSEL-REV-- 152

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG---FVEASAKDNTNIT 300
                                          +      +         +E SAKD++N+ 
Sbjct: 153 -------------------------------SLAEAQSLAEHYDILCAIETSAKDSSNVE 181

Query: 301 QVFKELLVQAKVK 313
           + F  +  +  ++
Sbjct: 182 EAFLRVATELIMR 194

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 9/79 (11%)

Query: 46  SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
                      E +D   K+V++G   VGK+ ++ RF    FS +   TI      DF+M
Sbjct: 13  GLVPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTI----GVDFTM 68

Query: 106 -----NGVHLKLDILDTSG 119
                 G  +KL I DT+G
Sbjct: 69  KTLEIQGKRVKLQIWDTAG 87

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 60.3 bits (147), Expect = 8e-11
 Identities = 25/126 (19%), Positives = 39/126 (30%), Gaps = 45/126 (35%)

Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
            A   +LVY I    ++  +       R       AS  + I++ GNK DL  + R+V  
Sbjct: 82  GAAGALLVYDITSRETYNALTNWLTDARML-----ASQNIVIILCGNKKDLDAD-REV-- 133

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
                                          T     +   EN   F+E SA    N+ +
Sbjct: 134 -------------------------------TFLEASRFAQENELMFLETSALTGENVEE 162

Query: 302 VFKELL 307
            F +  
Sbjct: 163 AFVQCA 168

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 9/69 (13%)

Query: 56  SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NGVHL 110
           SE +D   K +V+G    GKS ++H+F+   F      TI      +F        G ++
Sbjct: 4   SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTI----GVEFGSKIINVGGKYV 59

Query: 111 KLDILDTSG 119
           KL I DT+G
Sbjct: 60  KLQIWDTAG 68

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 61.2 bits (149), Expect = 8e-11
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 44/125 (35%)

Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
           A  F+L++ +    SF  +R     ++ +           IV++GNK+DL D+ R+V   
Sbjct: 108 AMGFLLMFDLTSQQSFLNVRNWMSQLQANA----YCENPDIVLIGNKADLPDQ-REV--- 159

Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
                                               ++  + G  + E SA    N+ + 
Sbjct: 160 ------------------------------NERQARELADKYGIPYFETSAATGQNVEKA 189

Query: 303 FKELL 307
            + LL
Sbjct: 190 VETLL 194

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 11/85 (12%)

Query: 46  SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI---------- 95
             SS      S  +D   K++ +G   VGK++ ++R+  N F+PK+  T+          
Sbjct: 9   HHSSGLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVV 68

Query: 96  -EEMHHEDFSMNGVHLKLDILDTSG 119
                    S     + L + DT+G
Sbjct: 69  YNAQGPNGSSGKAFKVHLQLWDTAG 93

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 60.8 bits (148), Expect = 9e-11
 Identities = 24/165 (14%), Positives = 54/165 (32%), Gaps = 43/165 (26%)

Query: 189 ADAFILVYAIDDPNSFEEIRL-IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGP 247
           A   IL + +    + + +   +++  F+       PIVV  NK D+ +  +++      
Sbjct: 85  ASGAILFFDVTSRITCQNLARWVKE--FQAVVGNEAPIVVCANKIDIKNR-QKI------ 135

Query: 248 FQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQVFKE 305
                                      + + V++V       + E SAK   N    F  
Sbjct: 136 ---------------------------SKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH 168

Query: 306 LLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPVPYDTTESVVQVD 350
           L      +    P L      +L P + + +    + ++ +  ++
Sbjct: 169 LARIFTGR----PDLIFVSNVNLEPTEVNYDYHSPEESKYIDYME 209

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 53  SGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NG 107
            GS E  +  +K+ ++G   VGK++ I+R L   F   Y  T+      +  +      G
Sbjct: 2   PGSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA---VNHPVTFLDDQG 58

Query: 108 VHLKLDILDTSG 119
             +K ++ DT+G
Sbjct: 59  NVIKFNVWDTAG 70

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 59.8 bits (146), Expect = 1e-10
 Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 45/125 (36%)

Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
           + A I+VY I    +F  ++     +R H        ++ + + GNK DL D  R     
Sbjct: 79  SAAAIIVYDITKEETFSTLKNWVRELRQH-----GPPSIVVAIAGNKCDLTDV-R----- 127

Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
                                    +V     +            FVE SAK+  NI ++
Sbjct: 128 -------------------------EVMERDAKDYAD---SIHAIFVETSAKNAININEL 159

Query: 303 FKELL 307
           F E+ 
Sbjct: 160 FIEIS 164

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 51.7 bits (125), Expect = 6e-08
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 9/61 (14%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNGVHLKLDILDTS 118
           KV ++G   VGKSSI+ RF+ ++F P    TI       F            K  I DT+
Sbjct: 8   KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIG----ASFMTKTVQYQNELHKFLIWDTA 63

Query: 119 G 119
           G
Sbjct: 64  G 64

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 59.9 bits (146), Expect = 1e-10
 Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 46/132 (34%)

Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
                I+VY +    SF  ++     I  +         V  ++VGNK+D  +  + V  
Sbjct: 81  GTHGVIVVYDVTSAESFVNVKRWLHEINQN------CDDVCRILVGNKNDDPER-KVV-- 131

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
                                           TE   +   + G    E SAK+N N+ +
Sbjct: 132 -------------------------------ETEDAYKFAGQMGIQLFETSAKENVNVEE 160

Query: 302 VFKELLVQAKVK 313
           +F  +       
Sbjct: 161 MFNCITELVLRA 172

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 48.7 bits (117), Expect = 6e-07
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 9/69 (13%)

Query: 56  SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NGVHL 110
           +  +D   K++++G   VGKSS++ RF  NTFS  Y  TI      DF +     NG  +
Sbjct: 3   ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTI----GVDFKIRTVEINGEKV 58

Query: 111 KLDILDTSG 119
           KL I DT+G
Sbjct: 59  KLQIWDTAG 67

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 45/125 (36%)

Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
           + A ++VY I   +SF  ++     +++H         + + + GNK DL+D  R     
Sbjct: 96  SAAAVIVYDITKQDSFYTLKKWVKELKEH-----GPENIVMAIAGNKCDLSDI-R----- 144

Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
                                    +VP    +   +     G   VE SAK+  NI ++
Sbjct: 145 -------------------------EVPLKDAKEYAE---SIGAIVVETSAKNAINIEEL 176

Query: 303 FKELL 307
           F+ + 
Sbjct: 177 FQGIS 181

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 14/85 (16%)

Query: 45  VSASSENESGSS-----EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMH 99
           + +S  +   SS            KV ++G   VGKSSI+ RF+ + F      TI    
Sbjct: 1   MGSSHHHHHHSSGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIG--- 57

Query: 100 HEDF-----SMNGVHLKLDILDTSG 119
              F            K  I DT+G
Sbjct: 58  -ASFMTKTVPCGNELHKFLIWDTAG 81

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 1e-10
 Identities = 72/472 (15%), Positives = 136/472 (28%), Gaps = 136/472 (28%)

Query: 1   MSALKSGEIRKLRPSLHSQFFVSAENA---GSQFLQPSLNFNR---ILNLVSASSENESG 54
           MS +K+    + +PS+ ++ ++   +     +Q      N +R    L L  A  E    
Sbjct: 95  MSPIKT---EQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPA 150

Query: 55  SSEGHDTRHKVVVMGGPKVGKSS----------IIHRFLYNTF--SPKYKRTIE---EMH 99
                     V++ G    GK+           +  +  +  F  + K   + E   EM 
Sbjct: 151 K--------NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM- 201

Query: 100 HEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKT- 158
                +  +  ++D   TS       +K              +  LRR L  +P  Y+  
Sbjct: 202 -----LQKLLYQIDPNWTSRSDHSSNIKL------RIHSIQAE--LRRLLKSKP--YENC 246

Query: 159 -----DVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH 213
                +VQ      +  ++C        + L +++    +     D  ++     +  DH
Sbjct: 247 LLVLLNVQNAKAWNAFNLSC--------KIL-LTTRFKQV----TDFLSAATTTHISLDH 293

Query: 214 I---FETKASTAVPIVVVGNK-SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPD 269
                      ++ +  +  +  DL  E     LT  P +        S+ A  I     
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPRE----VLTTNPRRL-------SIIAESIRDGLA 342

Query: 270 QVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLP 329
                         W+N +   +    T I +              L PA  R+    L 
Sbjct: 343 T-------------WDN-WKHVNCDKLTTIIESSLN---------VLEPAEYRKMFDRL- 378

Query: 330 PVQHSPNPV-PYDT--TESVVQVDWE-----------NGFVEAS--AKDNTNITQVFKEL 373
                   V P        ++ + W            N   + S   K     T     +
Sbjct: 379 -------SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

Query: 374 LVQAKVKYNLSPALRRRRRQSLPPVQHSPNPSLKSKGWVNEQFAWRHYYWYI 425
            ++ KVK     AL R         +   +  L             ++Y +I
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ------YFYSHI 477

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 8e-06
 Identities = 55/405 (13%), Positives = 113/405 (27%), Gaps = 111/405 (27%)

Query: 79  IHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW 138
           +     +  S   K  I+ +     +++G       L +  E+  +      VL    K+
Sbjct: 38  VQDMPKSILS---KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-VEEVLRINYKF 93

Query: 139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAI 198
            +    ++    Q  M  +  ++   +L       + N+                 V+A 
Sbjct: 94  LMSP--IKTEQRQPSMMTRMYIEQRDRL------YNDNQ-----------------VFAK 128

Query: 199 DDPNSFEEIRLIRDHIFETKASTAVPIVVVG----NKSDLA-----DENRQVDLTGGPFQ 249
            + +  +    +R  + E + +  V  ++ G     K+ +A         Q  +    F 
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNV--LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF- 185

Query: 250 TYLS----GLPDSVCA------HQISGTPDQVPYDTTESVVQVDWENG-----FVEASAK 294
            +L+      P++V        +QI          ++   +++                +
Sbjct: 186 -WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 295 ------DNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPVPYDTTESVVQ 348
                  N    + +    +  K+       L   R + +       + +   TT  +  
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKI-------LLTTRFKQV------TDFLSAATTTHISL 291

Query: 349 VDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNP---- 404
                                 K LL   K   +  P       Q LP    + NP    
Sbjct: 292 DHHSMTLTPDEV----------KSLL--LKY-LDCRP-------QDLPREVLTTNPRRLS 331

Query: 405 ----SLKSKG--WVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEI 443
               S++     W N    W+H         IE    VL  P E 
Sbjct: 332 IIAESIRDGLATWDN----WKHVNCDKLTTIIESSLNVLE-PAEY 371

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 45/125 (36%)

Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
           A A I+VY I +  SF   +     ++       AS  + I + GNK+DLA++ R     
Sbjct: 79  AQAAIVVYDITNEESFARAKNWVKELQRQ-----ASPNIVIALSGNKADLANK-R----- 127

Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
                                     V +   +S      +N   F+E SAK + N+ ++
Sbjct: 128 -------------------------AVDFQEAQSYAD---DNSLLFMETSAKTSMNVNEI 159

Query: 303 FKELL 307
           F  + 
Sbjct: 160 FMAIA 164

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 51.8 bits (125), Expect = 5e-08
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 9/61 (14%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNGVHLKLDILDTS 118
           K+V++G   VGKSS++ RF+   F    + TI       F      ++   +K +I DT+
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG----AAFLTQTVCLDDTTVKFEIWDTA 63

Query: 119 G 119
           G
Sbjct: 64  G 64

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 59.9 bits (146), Expect = 1e-10
 Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 45/126 (35%)

Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
            A   +LV+ +    ++  +      + DH     A   + +++VGNKSDL+   R+V  
Sbjct: 97  GAVGALLVFDLTKHQTYAVVERWLKELYDH-----AEATIVVMLVGNKSDLSQA-REV-- 148

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
                                           TE        NG  F+E SA D+TN+  
Sbjct: 149 -------------------------------PTEEARMFAENNGLLFLETSALDSTNVEL 177

Query: 302 VFKELL 307
            F+ +L
Sbjct: 178 AFETVL 183

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 46  SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
             SS      SE ++   KVV++G   VGK++++ RF  N FS   + TI      +FS 
Sbjct: 9   HHSSGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTI----GVEFST 64

Query: 106 -----NGVHLKLDILDTSG 119
                    +K  I DT+G
Sbjct: 65  RTVMLGTAAVKAQIWDTAG 83

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 59.9 bits (146), Expect = 1e-10
 Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 45/128 (35%)

Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
            A   +LVY I    ++E +      +RDH     A + + I++VGNKSDL    R V  
Sbjct: 101 GAVGALLVYDIAKHLTYENVERWLKELRDH-----ADSNIVIMLVGNKSDLRHL-RAV-- 152

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
                                           T+       +NG  F+E SA D+TN+  
Sbjct: 153 -------------------------------PTDEARAFAEKNGLSFIETSALDSTNVEA 181

Query: 302 VFKELLVQ 309
            F+ +L +
Sbjct: 182 AFQTILTE 189

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 51.4 bits (124), Expect = 9e-08
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 9/88 (10%)

Query: 37  NFNRILNLVSASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE 96
           + +   + +           + +D   KVV++G   VGKS+++ RF  N F+ + K TI 
Sbjct: 4   SHHHHHHGIPLPGRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI- 62

Query: 97  EMHHEDFSM-----NGVHLKLDILDTSG 119
                +F+      +G  +K  I DT+G
Sbjct: 63  ---GVEFATRSIQVDGKTIKAQIWDTAG 87

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 45/125 (36%)

Query: 189 ADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
           A A I+V+ + +  SFE  +     ++        +  + + + GNKSDL D  R     
Sbjct: 85  AAAAIIVFDVTNQASFERAKKWVQELQAQ-----GNPNMVMALAGNKSDLLDA-R----- 133

Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQV 302
                                    +V  +  ++  Q   ENG  F+E SAK  TN+ ++
Sbjct: 134 -------------------------KVTAEDAQTYAQ---ENGLFFMETSAKTATNVKEI 165

Query: 303 FKELL 307
           F E+ 
Sbjct: 166 FYEIA 170

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 54.8 bits (133), Expect = 7e-09
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 9/71 (12%)

Query: 54  GSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNGV 108
            ++       K+V++G    GKSS++ RF+ + F    + TI       F     ++N  
Sbjct: 4   AAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIG----AAFFSQTLAVNDA 59

Query: 109 HLKLDILDTSG 119
            +K +I DT+G
Sbjct: 60  TVKFEIWDTAG 70

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 36/158 (22%), Positives = 54/158 (34%), Gaps = 45/158 (28%)

Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
            A   +LVY I    ++E +      +RDH     A + + I++VGNKSDL    R V  
Sbjct: 77  GAVGALLVYDIAKHLTYENVERWLKELRDH-----ADSNIVIMLVGNKSDLRHL-RAV-- 128

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
                                           T+       +N   F+E SA D+TN+ +
Sbjct: 129 -------------------------------PTDEARAFAEKNNLSFIETSALDSTNVEE 157

Query: 302 VFKELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPVP 339
            FK +L +     +      R      P        VP
Sbjct: 158 AFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVP 195

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 9/61 (14%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NGVHLKLDILDTS 118
           KVV++G   VGKS+++ RF  N F+ + K TI      +F+      +G  +K  I DT+
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI----GVEFATRSIQVDGKTIKAQIWDTA 62

Query: 119 G 119
           G
Sbjct: 63  G 63

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 28/126 (22%), Positives = 43/126 (34%), Gaps = 45/126 (35%)

Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
            A   ++VY I   +++  +       R+       +    I+++GNK+DL  + R V  
Sbjct: 87  GAAGALMVYDITRRSTYNHLSSWLTDARNL-----TNPNTVIILIGNKADLEAQ-RDV-- 138

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
                                          T E   Q   ENG  F+EASAK   N+  
Sbjct: 139 -------------------------------TYEEAKQFAEENGLLFLEASAKTGENVED 167

Query: 302 VFKELL 307
            F E  
Sbjct: 168 AFLEAA 173

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 48.3 bits (116), Expect = 9e-07
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 53  SGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NG 107
           + +   +    K +++G   VGKS ++H+F    F      TI      +F       +G
Sbjct: 6   ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTI----GVEFGTRIIEVSG 61

Query: 108 VHLKLDILDTSG 119
             +KL I DT+G
Sbjct: 62  QKIKLQIWDTAG 73

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 21/137 (15%), Positives = 33/137 (24%), Gaps = 48/137 (35%)

Query: 189 ADAFILVYAIDDPNSF-------EEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQV 241
               ILV+ +    SF       E ++  R           +  V+V NK+DL  +  QV
Sbjct: 97  VYYAILVFDVSSMESFESCKAWFELLKSARPD-----RERPLRAVLVANKTDLPPQRHQV 151

Query: 242 DLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAK-DNTN 298
                                              +        N   F + SA     +
Sbjct: 152 ---------------------------------RLDMAQDWATTNTLDFFDVSANPPGKD 178

Query: 299 ITQVFKELLVQAKVKYN 315
               F  +       Y 
Sbjct: 179 ADAPFLSIATTFYRNYE 195

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 46 SASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRF--LYNTFSPKYKRTI 95
          S   +           R KV V+G   VGKS++I  F    + F   Y  T 
Sbjct: 4  SMVKKEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTS 55

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 45/138 (32%)

Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
            A   ILVY +   ++F ++      +  +         +  ++VGNK D   ENR+V  
Sbjct: 87  GAQGVILVYDVTRRDTFVKLDNWLNELETY----CTRNDIVNMLVGNKIDK--ENREV-- 138

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
                                               ++   ++   F+EASAK    +  
Sbjct: 139 -------------------------------DRNEGLKFARKHSMLFIEASAKTCDGVQC 167

Query: 302 VFKELLVQAKVKYNLSPA 319
            F+EL+ +      L  +
Sbjct: 168 AFEELVEKIIQTPGLWES 185

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 9/76 (11%)

Query: 49  SENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM--- 105
           S   SG  E   T  K++++G   VGKSS++ RF  +TF P+   TI      DF +   
Sbjct: 2   SSGSSGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATI----GVDFKVKTI 57

Query: 106 --NGVHLKLDILDTSG 119
             +G   KL I DT+G
Sbjct: 58  SVDGNKAKLAIWDTAG 73

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 25/126 (19%), Positives = 39/126 (30%), Gaps = 45/126 (35%)

Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
            A   +LVY I    ++  +       R       AS  + +++ GNK DL  E R+V  
Sbjct: 97  GAAGALLVYDITSRETYNSLAAWLTDARTL-----ASPNIVVILCGNKKDLDPE-REV-- 148

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
                                          T     +   EN   F+E SA    N+ +
Sbjct: 149 -------------------------------TFLEASRFAQENELMFLETSALTGENVEE 177

Query: 302 VFKELL 307
            F +  
Sbjct: 178 AFLKCA 183

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 48  SSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-- 105
           SS      S   D   K +V+G    GKS ++H+F+ N F      TI      +F    
Sbjct: 11  SSGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTI----GVEFGSRV 66

Query: 106 ---NGVHLKLDILDTSG 119
               G  +KL I DT+G
Sbjct: 67  VNVGGKTVKLQIWDTAG 83

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 60.4 bits (146), Expect = 4e-10
 Identities = 41/240 (17%), Positives = 75/240 (31%), Gaps = 45/240 (18%)

Query: 81  RFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL 140
              Y                E   +  +    + +D + ++  K +  G    G      
Sbjct: 114 DVQYFIGVQLDGTEHVRDAAEREGVMLIKKTAENIDEAAKELIKCVVVGDGAVGKTCL-- 171

Query: 141 DKVCLRRALNQRPMA--------YKTDVQLPSKLTSLAM--TCSTNEFPAMRALSISSAD 190
               +    N  P          Y  +V +  K  +L +  T    ++  +R LS    D
Sbjct: 172 ---LISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTD 228

Query: 191 AFILVYAIDDPNSFEEIRL-----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG 245
            F++ +++  P SF  +R      +R H          PI++VG K DL D+   ++   
Sbjct: 229 VFLICFSLVSPASFHHVRAKWYPEVRHH------CPNTPIILVGTKLDLRDDKDTIEKLK 282

Query: 246 GPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKE 305
               T ++       A +I                       ++E SA     +  VF E
Sbjct: 283 EKKLTPITYPQGLAMAKEIGAV-------------------KYLECSALTQRGLKTVFDE 323

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 58.9 bits (143), Expect = 5e-10
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 53  SGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLK 111
           S +      + K+V++G    GK++ + R L   F  KY  T+  E+H   F  N   +K
Sbjct: 6   SAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 65

Query: 112 LDILDTSG 119
            ++ DT+G
Sbjct: 66  FNVWDTAG 73

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 26/158 (16%), Positives = 50/158 (31%), Gaps = 54/158 (34%)

Query: 189 ADAFILVYAIDDPNSFEEI----RLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
           A   I+++ +    +++ +    R +            +PIV+ GNK D+ D  +     
Sbjct: 88  AQCAIIMFDVTSRVTYKNVPNWHRDLVRV------CENIPIVLCGNKVDIKDR-KVKA-- 138

Query: 245 GGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF- 303
                        S+  H+                        + + SAK N N  + F 
Sbjct: 139 ------------KSIVFHRKKNLQ-------------------YYDISAKSNYNFEKPFL 167

Query: 304 ---KELLVQAKVKYNLSPALRRRRRQSLPPVQHSPNPV 338
              ++L+    +++   PAL        P V   P   
Sbjct: 168 WLARKLIGDPNLEFVAMPALAP------PEVVMDPALA 199

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 47/129 (36%)

Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
           +  A + VY + +  SF  +       + H+     +  +P ++VGNK DL     QV  
Sbjct: 93  NVHAVVFVYDMTNMASFHSLPAWIEECKQHL----LANDIPRILVGNKCDLRSA-IQV-- 145

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAK---DNTN 298
                                           T+   +    +     E SAK   DN +
Sbjct: 146 -------------------------------PTDLAQKFADTHSMPLFETSAKNPNDNDH 174

Query: 299 ITQVFKELL 307
           +  +F  L 
Sbjct: 175 VEAIFMTLA 183

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 9/70 (12%)

Query: 55  SSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NGVH 109
                    K++V+G   VGK+ + +RF    F  + + TI      DF       +G  
Sbjct: 13  PRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATI----GVDFRERAVDIDGER 68

Query: 110 LKLDILDTSG 119
           +K+ + DT+G
Sbjct: 69  IKIQLWDTAG 78

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 45/126 (35%)

Query: 188 SADAFILVYAIDDPNSFEEIRL----IRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
            A   ++VY I   +S+E        +R++     A   V + ++GNKSDLA   R V  
Sbjct: 85  GAVGALIVYDISKSSSYENCNHWLSELREN-----ADDNVAVGLIGNKSDLAHL-RAV-- 136

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQ 301
                                           TE       EN   F E SA ++ N+ +
Sbjct: 137 -------------------------------PTEESKTFAQENQLLFTETSALNSENVDK 165

Query: 302 VFKELL 307
            F+EL+
Sbjct: 166 AFEELI 171

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 53  SGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM-----NG 107
                 +D   K+V++G   VGKS+++ RF  N F+   K TI      +F+       G
Sbjct: 4   EDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTI----GVEFATRTLEIEG 59

Query: 108 VHLKLDILDTSG 119
             +K  I DT+G
Sbjct: 60  KRIKAQIWDTAG 71

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 9/64 (14%)

Query: 61  TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF-----SMNGVHLKLDIL 115
           T  K+V++G   VGKSSI+ RF+ N F+   + TI       F     ++N   +K +I 
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG----AAFLTQRVTINEHTVKFEIW 57

Query: 116 DTSG 119
           DT+G
Sbjct: 58  DTAG 61

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 34/128 (26%)

Query: 188 SADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGP 247
           +A A ++VY +  P SF + R     +   +AS  + I +VGNK D   E  +       
Sbjct: 75  NAQAALVVYDVTKPQSFIKARHWVKEL-HEQASKDIIIALVGNKIDXLQEGGE------- 126

Query: 248 FQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNITQVFKE 305
                                 +V  +  E + +   E G  F E SAK   N+  VF  
Sbjct: 127 ---------------------RKVAREEGEKLAE---EKGLLFFETSAKTGENVNDVFLG 162

Query: 306 LLVQAKVK 313
           +  +  +K
Sbjct: 163 IGEKIPLK 170

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Length = 178

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 43/141 (30%)

Query: 178 FPAMRALSISSADAFILVYAIDD---PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDL 234
           F  MRA      D  ILV A DD   P + E I    +H    KA+  VPI+V  NK D 
Sbjct: 68  FTTMRARGAQVTDIVILVVAADDGVMPQTVEAI----NH---AKAA-NVPIIVAINKMDK 119

Query: 235 ADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTE-SVVQVDW--ENGFVEA 291
            + N                             PD+V  +  E ++V  +W  +  F + 
Sbjct: 120 PEAN-----------------------------PDRVMQELMEYNLVPEEWGGDTIFCKL 150

Query: 292 SAKDNTNITQVFKELLVQAKV 312
           SAK    +  + + +L+ +++
Sbjct: 151 SAKTKEGLDHLLEMILLVSEM 171

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 9/77 (11%)

Query: 52  ESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI---------EEMHHED 102
             G +  H    KV ++G    GK+S++ + +  TF PK  +T            +   +
Sbjct: 31  SKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLE 90

Query: 103 FSMNGVHLKLDILDTSG 119
                        D  G
Sbjct: 91  NDDELKECLFHFWDFGG 107

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 44.6 bits (105), Expect = 7e-05
 Identities = 21/179 (11%), Positives = 48/179 (26%), Gaps = 46/179 (25%)

Query: 186 ISSADAFILVYAIDDPNSFEE----IRLIRDHIFETKASTAVPIVVVGNKSDLADENRQV 241
           ++ +  ++L+    D  +       +R I  +          P++VV NK D  + +  +
Sbjct: 119 MTRSSVYMLLL---DSRTDSNKHYWLRHIEKY------GGKSPVIVVMNKIDE-NPSYNI 168

Query: 242 DLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301
           +            +                             EN F   S K+   +  
Sbjct: 169 EQKKI--NERFPAI-----------------------------ENRFHRISCKNGDGVES 197

Query: 302 VFKELLVQA-KVKYNLSPALRRRRRQSLPPVQHSPNPVPYDTTESVVQVDWENGFVEAS 359
           + K L              L     +    +  +     Y     V ++  ++G  +  
Sbjct: 198 IAKSLKSAVLHPDSIYGTPLAPSWIKVKEKLVEATTAQRYLNRTEVEKICNDSGITDPG 256

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 26/202 (12%), Positives = 54/202 (26%), Gaps = 57/202 (28%)

Query: 45  VSASSENESGSSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE---EMHHE 101
                 +   +     ++ ++++MG  + GKSSI     +   SP     +E   +++ +
Sbjct: 3   HHHHHSSGRENLYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKD 61

Query: 102 DFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQ 161
           D S +   +   I D  G+                                 M ++    
Sbjct: 62  DISNSS-FVNFQIWDFPGQMD----------------------FFDPTFDYEMIFR---- 94

Query: 162 LPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST 221
                                        A I V    D       RL        K + 
Sbjct: 95  --------------------------GTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP 128

Query: 222 AVPIVVVGNKSDLADENRQVDL 243
            +   V  +K D   ++ +++ 
Sbjct: 129 DMNFEVFIHKVDGLSDDHKIET 150

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 15/124 (12%), Positives = 45/124 (36%), Gaps = 31/124 (25%)

Query: 186 ISSADAFILVYAIDDPNS-FEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLT 244
           ++    ++ VY +    +  + ++    +I + +AS+  P+++VG   D++DE ++    
Sbjct: 77  MTQRALYLAVYDLSKGQAEVDAMKPWLFNI-KARASS-SPVILVGTHLDVSDEKQRKACM 134

Query: 245 GGPFQTYLS--GLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV 302
               +  L+  G P                                   + +++  + ++
Sbjct: 135 SKITKELLNKRGFPAIRDY--------------------------HFVNATEESDALAKL 168

Query: 303 FKEL 306
            K +
Sbjct: 169 RKTI 172

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 62  RHKVVVMGGPKVGKSSIIHRFLYNTFSPK--YKRTI------EEMHHEDFSMNGVHLKLD 113
           R K++++G    GK++++ + +    S       T+        +   D     +   L+
Sbjct: 2   RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDL--VLN 59

Query: 114 ILDTSG 119
           + D +G
Sbjct: 60  VWDFAG 65

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} Length = 501

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 43/141 (30%)

Query: 178 FPAMRALSISSADAFILVYAIDD---PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDL 234
           F +MRA    + D  +LV A DD   P + E I     H    KA+  VP+VV  NK D 
Sbjct: 64  FTSMRARGAQATDIVVLVVAADDGVMPQTIEAI----QH---AKAA-QVPVVVAVNKIDK 115

Query: 235 ADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTE-SVVQVDW--ENGFVEA 291
            + +                             PD+V  + ++  ++  +W  E+ FV  
Sbjct: 116 PEAD-----------------------------PDRVKNELSQYGILPEEWGGESQFVHV 146

Query: 292 SAKDNTNITQVFKELLVQAKV 312
           SAK  T I ++   +L+QA+V
Sbjct: 147 SAKAGTGIDELLDAILLQAEV 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	592
2xzm_7	162	Plectin/S10 domain containing protein; ribosome, t	100.0
3u5c_K	105	40S ribosomal protein S10-A; translation, ribosome	100.0
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.96
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.96
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.96
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.96
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.96
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.96
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.96
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.96
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.96
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.96
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.96
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.96
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.95
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.95
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.95
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.95
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.95
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.95
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.95
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.95
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.95
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.95
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.95
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.95
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.95
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.95
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.95
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.95
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.95
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.95
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.95
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.95
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.95
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.95
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.95
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.95
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.95
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.95
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.95
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.95
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.95
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.95
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.95
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.95
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.95
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.95
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.95
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.95
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.95
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.95
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.95
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.95
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.95
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.95
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.95
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.95
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.95
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.94
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.94
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.94
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.94
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.94
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.94
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.94
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.94
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.94
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.94
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.94
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.94
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.94
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.94
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.94
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.94
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.94
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.93
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.93
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.93
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.93
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.93
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.92
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.92
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.92
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.92
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.92
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.92
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.92
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.92
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.92
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.92
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.92
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.91
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.85
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.91
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.91
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.91
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.9
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.9
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.9
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.9
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.9
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.9
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.89
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.88
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.87
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.87
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.87
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.87
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.86
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.86
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.86
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.85
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.85
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.84
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.82
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.82
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.81
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.81
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.8
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.8
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.8
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.79
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.79
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.79
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.79
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.78
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.78
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.77
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.75
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.75
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.74
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.74
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.73
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.73
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.71
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.7
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.7
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.69
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.69
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.68
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.68
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.67
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.66
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.66
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.66
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.66
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.65
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.65
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.65
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.65
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.65
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.64
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.64
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.63
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.63
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.63
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.62
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.62
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.6
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.59
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.58
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.57
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.57
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.57
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.57
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.56
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.56
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.56
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.56
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.55
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.52
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.51
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.5
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.5
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.5
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.5
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.48
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.48
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.48
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.47
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.46
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.46
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.46
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.45
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.43
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.43
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.41
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.39
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.39
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.37
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.36
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.36
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.3
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.28
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.27
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.27
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.24
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.23
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.23
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.17
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.12
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.01
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.0
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.89
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.83
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.78
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.77
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.71
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.64
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.5
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.5
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.36
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.25
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.14
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.12
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.0
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.96
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.95
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.91
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.68
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	97.61
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.61
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.32
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.28
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.17
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.07
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.88
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.71
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.62
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.47
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.41
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	95.93
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	94.97
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	94.72
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	94.64
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	94.62
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	94.24
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	94.23
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	94.2
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	94.01
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	93.95
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	93.95
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	93.9
2chg_A	226	Replication factor C small subunit; DNA-binding pr	93.9
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	93.87
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	93.81
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	93.67
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	93.48
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	93.4
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	93.31
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	93.21
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	93.18
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	93.13
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	93.05
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	92.88
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	92.84
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	92.83
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	92.8
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	92.66
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	92.64
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	92.63
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	92.54
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	92.52
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	92.49
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	92.49
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	92.47
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	92.45
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	92.44
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	92.4
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	92.4
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	92.39
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	92.39
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	92.37
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	92.3
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	92.3
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	92.26
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	92.24
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	92.22
4a74_A	231	DNA repair and recombination protein RADA; hydrola	92.19
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	92.17
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	92.15
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	92.14
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	92.13
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	92.06
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	92.03
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	92.02
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	92.01
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	92.0
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	91.98
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	91.97
1b0u_A	262	Histidine permease; ABC transporter, transport pro	91.92
2eyu_A	261	Twitching motility protein PILT; pilus retraction	91.91
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	91.88
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	91.86
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	91.84
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	91.83
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	91.79
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	91.77
1sgw_A	214	Putative ABC transporter; structural genomics, P p	91.77
1g6h_A	257	High-affinity branched-chain amino acid transport	91.69
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	91.68
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	91.67
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	91.63
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	91.61
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	91.61
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	91.6
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	91.54
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	91.49
1ji0_A	240	ABC transporter; ATP binding protein, structural g	91.46
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	91.44
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	91.36
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	91.34
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	91.33
2ghi_A	260	Transport protein; multidrug resistance protein, M	91.33
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	91.28
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	91.27
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	91.26
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	91.23
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	91.22
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	91.17
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	91.14
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	91.11
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	90.97
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	90.95
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	90.94
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	90.9
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	90.87
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	90.81
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	90.77
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	90.73
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	90.72
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	90.69
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	90.67
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	90.62
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	90.6
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	90.58
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	90.58
1via_A	175	Shikimate kinase; structural genomics, transferase	90.53
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	90.47
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	90.46
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	90.43
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	90.41
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	90.34
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	90.34
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	90.29
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	90.28
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	90.18
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	90.15
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	90.14
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	90.12
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	90.11
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	90.08
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	90.0
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	89.99
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	89.97
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	89.95
3cwq_A	209	Para family chromosome partitioning protein; alpha	89.91
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	89.9
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	89.89
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	89.87
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	89.83
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	89.76
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	89.75
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	89.7
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	89.59
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	89.59
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	89.57
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	89.56
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	89.56
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	89.51
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	89.51
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	89.51
3kta_A	182	Chromosome segregation protein SMC; structural mai	89.4
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	89.37
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	89.36
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	89.34
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	89.33
2cvh_A	220	DNA repair and recombination protein RADB; filamen	89.3
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	89.29
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	89.23
2ewv_A	372	Twitching motility protein PILT; pilus retraction	89.16
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	89.13
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	89.07
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	89.07
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	89.06
2vli_A	183	Antibiotic resistance protein; transferase, tunica	88.96
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	88.87
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	88.86
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	88.83
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	88.76
3bos_A	242	Putative DNA replication factor; P-loop containing	88.72
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	88.67
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	88.57
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	88.51
3co5_A	143	Putative two-component system transcriptional RES	88.51
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	88.49
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	88.09
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	88.09
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	87.95
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	87.94
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	87.94
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	87.93
1p9r_A	418	General secretion pathway protein E; bacterial typ	87.93
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	87.85
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	87.79
2og2_A	359	Putative signal recognition particle receptor; nuc	87.69
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	87.68
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	87.68
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	87.65
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	87.64
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	87.62
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	87.14
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	87.14
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	87.07
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	87.03
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	86.92
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	86.89
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	86.86
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	86.58
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	86.28
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	86.17
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	85.81
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	85.67
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	85.54
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	85.52
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	85.41
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	85.36
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	85.32
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	85.19
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	85.15
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	85.13
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	85.07
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	84.61
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	84.5
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	84.49
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	84.33
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	84.29
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	84.28
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	84.26
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	84.18
2fna_A	357	Conserved hypothetical protein; structural genomic	84.12
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	83.82
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	83.71
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	83.69
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	83.67
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	83.61
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	83.6
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	83.59
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	83.58
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	83.56
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	83.46
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	83.4
1xp8_A	366	RECA protein, recombinase A; recombination, radior	83.38
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	83.26
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	83.24
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	83.22
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	83.19
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	83.17
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	83.11
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	82.78
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	82.75
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	82.73
1tue_A	212	Replication protein E1; helicase, replication, E1E	82.65
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	82.57
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	82.48
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	82.36
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	82.25
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	82.17
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	82.13
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	82.02
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	81.99
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	81.95
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	81.88
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	81.62
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	81.44
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	81.37
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	81.12
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	81.1
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	80.93
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	80.87
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	80.86
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	80.84
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	80.72
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	80.55
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	80.52
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	80.44
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	80.26
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	80.24
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	80.14
2qgz_A	308	Helicase loader, putative primosome component; str	80.1
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	80.08
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	80.01

>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7

Probab=100.00  E-value=1e-42  Score=316.70  Aligned_cols=109  Identities=23%  Similarity=0.389  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHhhhccCCChhhhccccCCCCCccc-CCCCCCCCcCceeeeeecceEEEeEcchhHHHHHhhcCCCCC-CC
Q psy1524         367 TQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQH-SPNPSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDE-IV  444 (592)
Q Consensus       367 ~~lf~e~v~~akkd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~~~y~~l~~~g~~~l~~~l~~~~~-~~  444 (592)
                      .+||||||++||||||.-|+|     .++|||++ ++||||+|||||||||||||||||||||||+|||+|||||+| ||
T Consensus        14 e~LFkeGV~VaKKD~~kHpel-----~~vpNL~ViKamqSLkSRGyVkEqFaWrhyYw~LTnEGIeYLR~yLhLP~e~IV   88 (162)
T 2xzm_7           14 KQLLQDGVFVLKKDFEGHHEE-----TGVPNLHCYILVRSLKDRGFLEEIFNWGFTYYYLNKEGCEYLKTKLGISADNVI   88 (162)
T ss_dssp             HHHHHHTEEEEESCSSSBCTT-----TCCBHHHHHHHHHHHHHHTSEEEEEETTEEEEEECHHHHHHHHHHHCSSTTSCC
T ss_pred             HHHhhcCcEEEeccccCCCcc-----cCcCcHHHHHHHhcccccccccceeeeEEEEEEEchHHHHHHHHHhCCCccccc
Confidence            479999999999999955555     44555555 489999999999999999999999999999999999999999 99


Q ss_pred             ccccccccccCCCCCCCccCCCCCCCCCC-CCCCccccCC
Q psy1524         445 PSTLKRQARTTDASKVPRQMTQRPDGGRG-ADDRMSYRKG  483 (592)
Q Consensus       445 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~yr~~  483 (592)
                      |+||+++.++. .++++  ..+.++++|+ ++||++||++
T Consensus        89 PaTlk~~~~~~-~rp~~--~~~~~r~~r~~~~dR~~YRr~  125 (162)
T 2xzm_7           89 PKTFKASNVNF-ISKEE--DEEERPRRQFNKGGRTGERDG  125 (162)
T ss_dssp             CGGGSCCCCCC-CCCCC--C--------------------
T ss_pred             cchhccccCCC-CCCCC--CCCCCCCCCCCCCChhhhhcc
Confidence            99999987663 33322  1111233344 4789999974

>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K

Probab=100.00  E-value=3.5e-39  Score=276.87  Aligned_cols=83  Identities=35%  Similarity=0.591  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHhhhccCCChhhhccccCCCCCccc-CCCCCCCCcCceeeeeecceEEEeEcchhHHHHHhhcCCCCCCCc
Q psy1524         367 TQVFKELLVQAKVKYNLSPALRRRRRQSLPPVQH-SPNPSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVP  445 (592)
Q Consensus       367 ~~lf~e~v~~akkd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~~~y~~l~~~g~~~l~~~l~~~~~~~p  445 (592)
                      .+||+|||++||||+++++|-+   +. +||+++ ++||||+|||||||||||||||||||||||+|||+|||||+||||
T Consensus        13 e~LFkEGV~vakKD~~~~kH~e---l~-vpNL~Vik~mqSLkSrGyVkeqFaWrh~Yw~LTnEGieyLR~yLhLP~eivP   88 (105)
T 3u5c_K           13 QYLFQEGVVVAKKDFNQAKHEE---ID-TKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVP   88 (105)
T ss_dssp             HHHHHHSEEECCSCSCCSSCSS---SS-SCHHHHHHHHHHHHHTSSEEEECTTTCCEEEECHHHHHHHHHHTCCCSSCCS
T ss_pred             HHHhhCCcEEEEcCCCCCCCCc---cC-ccchhHHHHHhcccccceeccEecceEEEEEEchhhHHHHHHHhCCCchhcC
Confidence            4799999999999999996521   12 555555 489999999999999999999999999999999999999999999


Q ss_pred             cccccccc
Q psy1524         446 STLKRQAR  453 (592)
Q Consensus       446 ~~~~~~~~  453 (592)
                      +||+++++
T Consensus        89 aTl~~~~~   96 (105)
T 3u5c_K           89 GTYIQERN   96 (105)
T ss_dssp             SCSCCSCC
T ss_pred             ccccccCC
Confidence            99999744

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=6.4e-33  Score=274.40  Aligned_cols=166  Identities=30%  Similarity=0.499  Sum_probs=143.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      .+.+||+|||++|||||||++||+.+.|.+.+.+|++ ++..+.+.+++..+.++||||+|+                  
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGq------------------   72 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGL------------------   72 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCT------------------
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCc------------------
Confidence            5679999999999999999999999999999999998 888889999999999999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           ++|..++..|++++|++|+|||++++.||+++..|+..+... 
T Consensus        73 -------------------------------------e~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~-  114 (216)
T 4dkx_A           73 -------------------------------------ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE-  114 (216)
T ss_dssp             -------------------------------------TTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-
T ss_pred             -------------------------------------hhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHh-
Confidence                                                 899999999999999999999999999999999999999876 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      ..+++|+||||||+|+.+.                               |.|+.+++..+++ ..++.|+||||++|.|
T Consensus       115 ~~~~~piilVgNK~Dl~~~-------------------------------r~V~~~e~~~~a~-~~~~~~~e~SAktg~n  162 (216)
T 4dkx_A          115 RGSDVIIMLVGNKTDLADK-------------------------------RQVSIEEGERKAK-ELNVMFIETSAKAGYN  162 (216)
T ss_dssp             HTTSSEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEEEBTTTTBS
T ss_pred             cCCCCeEEEEeeccchHhc-------------------------------CcccHHHHhhHHH-HhCCeeEEEeCCCCcC
Confidence            4578999999999999876                               8899999999998 5567899999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy1524         299 ITQVFKELLVQAKVK  313 (592)
Q Consensus       299 VeeLf~~Li~~i~~~  313 (592)
                      |+++|+.|++.+...
T Consensus       163 V~e~F~~i~~~i~~~  177 (216)
T 4dkx_A          163 VKQLFRRVAAALPGM  177 (216)
T ss_dssp             HHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999988543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.96  E-value=2.3e-28  Score=230.60  Aligned_cols=169  Identities=30%  Similarity=0.499  Sum_probs=151.5

Q ss_pred             CCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ....+.+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.++||||+|+                
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~----------------   76 (183)
T 3kkq_A           13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQ----------------   76 (183)
T ss_dssp             -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSC----------------
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCc----------------
Confidence            3456789999999999999999999999999989999999777888889999999999999999                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             +++..+...+++.+|++|+|||++++.+|+.+..|+..+..
T Consensus        77 ---------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  117 (183)
T 3kkq_A           77 ---------------------------------------EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILR  117 (183)
T ss_dssp             ---------------------------------------GGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             ---------------------------------------hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence                                                   77778888899999999999999999999999999999887


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC-C
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK-D  295 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk-t  295 (592)
                      .....++|+|+|+||+|+.+.                               +.++.+++..+++. .+++|++|||+ +
T Consensus       118 ~~~~~~~p~ilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~~-~~~~~~~~Sa~~~  165 (183)
T 3kkq_A          118 VKDRESFPMILVANKVDLMHL-------------------------------RKVTRDQGKEMATK-YNIPYIETSAKDP  165 (183)
T ss_dssp             HHTSSCCCEEEEEECTTCSTT-------------------------------CCSCHHHHHHHHHH-HTCCEEEEBCSSS
T ss_pred             hcCCCCCcEEEEEECCCchhc-------------------------------cCcCHHHHHHHHHH-hCCeEEEeccCCC
Confidence            666678999999999999765                               67888888888874 45889999999 9


Q ss_pred             CccHHHHHHHHHHHHHH
Q psy1524         296 NTNITQVFKELLVQAKV  312 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~~  312 (592)
                      |.||+++|+.+++.+.+
T Consensus       166 ~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          166 PLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             CBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999998853

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.96  E-value=4.3e-28  Score=224.00  Aligned_cols=164  Identities=34%  Similarity=0.580  Sum_probs=147.4

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ..+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.||||+|+                    
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~--------------------   61 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT--------------------   61 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSS--------------------
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCCh--------------------
Confidence            468999999999999999999999999888899998777777888988999999999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         +++..+...++..+|++++|||++++.+|+.+..|+..+......
T Consensus        62 -----------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  106 (167)
T 1c1y_A           62 -----------------------------------EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT  106 (167)
T ss_dssp             -----------------------------------CSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC
T ss_pred             -----------------------------------HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc
Confidence                                               677788888999999999999999999999999999988876556


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      .++|+++|+||+|+.+.                               +.++.+++..+++.....++++|||++|.||+
T Consensus       107 ~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  155 (167)
T 1c1y_A          107 EDVPMILVGNKCDLEDE-------------------------------RVVGKEQGQNLARQWCNCAFLESSAKSKINVN  155 (167)
T ss_dssp             SCCCEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHH
T ss_pred             CCCcEEEEEECcccccc-------------------------------ccCCHHHHHHHHHHccCCcEEEecCCCCCCHH
Confidence            78999999999999865                               56778888888875557889999999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         301 QVFKELLVQA  310 (592)
Q Consensus       301 eLf~~Li~~i  310 (592)
                      ++|+.+++.+
T Consensus       156 ~l~~~l~~~i  165 (167)
T 1c1y_A          156 EIFYDLVRQI  165 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999876

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.96  E-value=5.6e-28  Score=230.85  Aligned_cols=168  Identities=20%  Similarity=0.308  Sum_probs=144.2

Q ss_pred             CCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ......+||+|+|++|||||||+++|+++.|...+.+|. +.+...+.+++..+.++||||+|+                
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~l~i~Dt~G~----------------   77 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGP----------------   77 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEEEEEEEETTEEEEEEEEECSSS----------------
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceEEEEEEECCEEEEEEEEECCCC----------------
Confidence            445678999999999999999999999999988888874 445588889999999999999999                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             +.|.     +++.+|++|+|||++++.||+.+..|+..+..
T Consensus        78 ---------------------------------------~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~  113 (184)
T 3ihw_A           78 ---------------------------------------PELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCS  113 (184)
T ss_dssp             ---------------------------------------CCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHT
T ss_pred             ---------------------------------------hhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence                                                   5554     68889999999999999999999999999987


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      .....++|+|||+||+|+....                             .+.++.+++..+++......|++|||++|
T Consensus       114 ~~~~~~~piilv~nK~Dl~~~~-----------------------------~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  164 (184)
T 3ihw_A          114 FRNASEVPMVLVGTQDAISAAN-----------------------------PRVIDDSRARKLSTDLKRCTYYETCATYG  164 (184)
T ss_dssp             TSCGGGSCEEEEEECTTCBTTB-----------------------------CCCSCHHHHHHHHHHTTTCEEEEEBTTTT
T ss_pred             hcCCCCCCEEEEEECccccccc-----------------------------ccccCHHHHHHHHHHcCCCeEEEecCCCC
Confidence            6434679999999999996431                             16788899999988655689999999999


Q ss_pred             ccHHHHHHHHHHHHHHhc
Q psy1524         297 TNITQVFKELLVQAKVKY  314 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~~~~  314 (592)
                      .||+++|+.+++.+...+
T Consensus       165 ~gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          165 LNVERVFQDVAQKVVALR  182 (184)
T ss_dssp             BTHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            999999999999986653

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.96  E-value=7.7e-28  Score=225.16  Aligned_cols=169  Identities=36%  Similarity=0.577  Sum_probs=149.6

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ....+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.||||+|+                  
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~------------------   67 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQ------------------   67 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCT------------------
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCc------------------
Confidence            45679999999999999999999999999999999999777788889999999999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           +++..+...++..+|++|+|||++++.+|+.+..|+..+....
T Consensus        68 -------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  110 (181)
T 2fn4_A           68 -------------------------------------EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK  110 (181)
T ss_dssp             -------------------------------------TTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------hhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence                                                 6677778888999999999999999999999999999886665


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      ...++|+++|+||+|+...                               +.++.+++..++. ..+..+++|||++|.|
T Consensus       111 ~~~~~piilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~g  158 (181)
T 2fn4_A          111 DRDDFPVVLVGNKADLESQ-------------------------------RQVPRSEASAFGA-SHHVAYFEASAKLRLN  158 (181)
T ss_dssp             TSSCCCEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECBTTTTBS
T ss_pred             CCCCCCEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCCeEEEecCCCCCC
Confidence            5678999999999999865                               5677788888876 4567899999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q psy1524         299 ITQVFKELLVQAKVKY  314 (592)
Q Consensus       299 VeeLf~~Li~~i~~~~  314 (592)
                      |+++|+.+++.+....
T Consensus       159 v~~l~~~l~~~~~~~~  174 (181)
T 2fn4_A          159 VDEAFEQLVRAVRKYQ  174 (181)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999986543

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.96  E-value=2e-28  Score=230.59  Aligned_cols=168  Identities=29%  Similarity=0.576  Sum_probs=146.3

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.++||||+|+                   
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~-------------------   64 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ-------------------   64 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------------
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCc-------------------
Confidence            4579999999999999999999999999999999999777888889999999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          ++|..+...+++.+|++|+|||++++.+|+.+..|+..+.....
T Consensus        65 ------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  108 (181)
T 3t5g_A           65 ------------------------------------DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG  108 (181)
T ss_dssp             ------------------------------------CTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-
T ss_pred             ------------------------------------hhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence                                                55555666678999999999999999999999999999887655


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..++|+|+|+||+|+.+.                               +.++.+++..+++ ..+++|++|||++|.||
T Consensus       109 ~~~~p~ilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v  156 (181)
T 3t5g_A          109 KVQIPIMLVGNKKDLHME-------------------------------RVISYEEGKALAE-SWNAAFLESSAKENQTA  156 (181)
T ss_dssp             ---CCEEEEEECTTCTTT-------------------------------CCSCHHHHHHHHH-HTTCEEEECCTTSHHHH
T ss_pred             CCCCCEEEEEECccchhc-------------------------------ceecHHHHHHHHH-HhCCcEEEEecCCCCCH
Confidence            668999999999999765                               6788889998887 55778999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q psy1524         300 TQVFKELLVQAKVKY  314 (592)
Q Consensus       300 eeLf~~Li~~i~~~~  314 (592)
                      +++|+.+++.+....
T Consensus       157 ~~l~~~l~~~~~~~~  171 (181)
T 3t5g_A          157 VDVFRRIILEAEKMD  171 (181)
T ss_dssp             HHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999986544

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.96  E-value=4.1e-28  Score=234.17  Aligned_cols=170  Identities=21%  Similarity=0.326  Sum_probs=140.0

Q ss_pred             CCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCce-eeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524          57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI-EEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP  135 (592)
Q Consensus        57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt-~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~  135 (592)
                      ...+..+||+|+|++|||||||+++|++..+...+.+++ .+.+...+.+++..+.+.||||+|+               
T Consensus        18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~---------------   82 (195)
T 3cbq_A           18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ---------------   82 (195)
T ss_dssp             ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCC---------------
T ss_pred             CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCC---------------
Confidence            344677999999999999999999998654432333443 4777888889999999999999999               


Q ss_pred             CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhH-HHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524         136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPA-MRALSISSADAFILVYAIDDPNSFEEIRLIRDHI  214 (592)
Q Consensus       136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L  214 (592)
                                                              +.+.. ++..+++.+|++|+|||++++.||+.+..|+..+
T Consensus        83 ----------------------------------------~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i  122 (195)
T 3cbq_A           83 ----------------------------------------GDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRL  122 (195)
T ss_dssp             ----------------------------------------SGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             ----------------------------------------ccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence                                                    55543 7778899999999999999999999999999988


Q ss_pred             HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524         215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK  294 (592)
Q Consensus       215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk  294 (592)
                      .......++|+|+|+||+|+...                               +.++.+++..+++ ..++.|++|||+
T Consensus       123 ~~~~~~~~~piilv~nK~Dl~~~-------------------------------~~v~~~~~~~~a~-~~~~~~~e~Sa~  170 (195)
T 3cbq_A          123 RAGRPHHDLPVILVGNKSDLARS-------------------------------REVSLEEGRHLAG-TLSCKHIETSAA  170 (195)
T ss_dssp             HHHSTTSCCCEEEEEECTTCTTT-------------------------------CCSCHHHHHHHHH-HTTCEEEEEBTT
T ss_pred             HHhcCCCCCCEEEEeechhcccc-------------------------------CCcCHHHHHHHHH-HhCCEEEEEcCC
Confidence            77643458999999999999765                               6678888888887 446789999999


Q ss_pred             CCccHHHHHHHHHHHHHHh
Q psy1524         295 DNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i~~~  313 (592)
                      +|.||+++|+.+++.+...
T Consensus       171 ~~~~v~~lf~~l~~~i~~~  189 (195)
T 3cbq_A          171 LHHNTRELFEGAVRQIRLR  189 (195)
T ss_dssp             TTBSHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999988543

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.96  E-value=7.6e-28  Score=226.06  Aligned_cols=164  Identities=22%  Similarity=0.369  Sum_probs=141.2

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||+++|+++.+.+ +.+|+++.+.+.+.+++..+.++||||+|+                   
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~-------------------   64 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGA-------------------   64 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSS-------------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCC-------------------
Confidence            467999999999999999999999999886 788888888888889999999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          ++     ..+++++|++|+|||++++.||+.+..|+..+.....
T Consensus        65 ------------------------------------~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~  103 (178)
T 2iwr_A           65 ------------------------------------PD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRG  103 (178)
T ss_dssp             ------------------------------------CC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC
T ss_pred             ------------------------------------ch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHh
Confidence                                                33     3468889999999999999999999998877766532


Q ss_pred             --CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         220 --STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       220 --~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                        ..++|+|+|+||+|+....                             .+.++.+++..+++.....++++|||++|.
T Consensus       104 ~~~~~~piilv~nK~Dl~~~~-----------------------------~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  154 (178)
T 2iwr_A          104 EGRGGLALALVGTQDRISASS-----------------------------PRVVGDARARALXADMKRCSYYETXATYGL  154 (178)
T ss_dssp             SSSCCCEEEEEEECTTCBTTB-----------------------------CCCSCHHHHHHHHHHHSSEEEEEEBTTTTB
T ss_pred             cCCCCCCEEEEEECccccccc-----------------------------cCcCCHHHHHHHHHhhcCCeEEEEeccccC
Confidence              3578999999999995321                             167788888888875557889999999999


Q ss_pred             cHHHHHHHHHHHHHHh
Q psy1524         298 NITQVFKELLVQAKVK  313 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~  313 (592)
                      ||+++|+.+++.+...
T Consensus       155 ~i~~lf~~l~~~~~~~  170 (178)
T 2iwr_A          155 NVDRVFQEVAQKVVTL  170 (178)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999998654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.96  E-value=1.2e-27  Score=220.33  Aligned_cols=164  Identities=32%  Similarity=0.626  Sum_probs=144.7

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ..+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.||||+|+                    
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~--------------------   62 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ--------------------   62 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---------------------
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCc--------------------
Confidence            468999999999999999999999999888889998777777888999999999999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         +++..+...++..+|++++|||++++.+|+.+..|+..+......
T Consensus        63 -----------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  107 (168)
T 1u8z_A           63 -----------------------------------EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED  107 (168)
T ss_dssp             -------------------------------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             -----------------------------------chhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence                                               778888899999999999999999999999999999999887555


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      .++|+++|+||+|+.+.                               +.++.+++..+++ ..+.++++|||++|.||+
T Consensus       108 ~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~  155 (168)
T 1u8z_A          108 ENVPFLLVGNKSDLEDK-------------------------------RQVSVEEAKNRAD-QWNVNYVETSAKTRANVD  155 (168)
T ss_dssp             TTSCEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEECCTTTCTTHH
T ss_pred             CCCcEEEEEECcccccc-------------------------------CccCHHHHHHHHH-HcCCeEEEeCCCCCCCHH
Confidence            68999999999999765                               5677788888876 456789999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         301 QVFKELLVQAK  311 (592)
Q Consensus       301 eLf~~Li~~i~  311 (592)
                      ++|+++++.+.
T Consensus       156 ~l~~~l~~~i~  166 (168)
T 1u8z_A          156 KVFFDLMREIR  166 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999874

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.96  E-value=1e-27  Score=231.88  Aligned_cols=171  Identities=27%  Similarity=0.446  Sum_probs=142.0

Q ss_pred             CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524          56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG  134 (592)
Q Consensus        56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~  134 (592)
                      .+..+..+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.++||||+|+              
T Consensus        23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--------------   88 (201)
T 2hup_A           23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ--------------   88 (201)
T ss_dssp             ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTC--------------
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc--------------
Confidence            34456789999999999999999999999999888888887 677788888998899999999999              


Q ss_pred             CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524         135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI  214 (592)
Q Consensus       135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L  214 (592)
                                                               ++|..++..+++.+|++|+|||++++.+|+.+..|+..+
T Consensus        89 -----------------------------------------~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i  127 (201)
T 2hup_A           89 -----------------------------------------ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDV  127 (201)
T ss_dssp             -----------------------------------------GGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHH
T ss_pred             -----------------------------------------HhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence                                                     788889999999999999999999999999999999988


Q ss_pred             HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCC-eEEEccc
Q psy1524         215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWEN-GFVEASA  293 (592)
Q Consensus       215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~-~~~EvSA  293 (592)
                      ... ...++|+|||+||+|+.+.                               +.++.+++..+++. .++ .+++|||
T Consensus       128 ~~~-~~~~~piilv~NK~Dl~~~-------------------------------~~v~~~~~~~~~~~-~~~~~~~~~SA  174 (201)
T 2hup_A          128 RKY-AGSNIVQLLIGNKSDLSEL-------------------------------REVSLAEAQSLAEH-YDILCAIETSA  174 (201)
T ss_dssp             HHH-SCTTCEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHHH-TTCSEEEECBT
T ss_pred             HHh-cCCCCCEEEEEECCccccc-------------------------------cccCHHHHHHHHHH-cCCCEEEEEeC
Confidence            776 3468999999999999865                               56788888888874 455 8999999


Q ss_pred             CCCccHHHHHHHHHHHHHHhc
Q psy1524         294 KDNTNITQVFKELLVQAKVKY  314 (592)
Q Consensus       294 ktg~gVeeLf~~Li~~i~~~~  314 (592)
                      ++|.||+++|+.|++.+....
T Consensus       175 ~~g~gi~~l~~~l~~~i~~~~  195 (201)
T 2hup_A          175 KDSSNVEEAFLRVATELIMRH  195 (201)
T ss_dssp             TTTBSHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999986543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.96  E-value=1.7e-27  Score=224.01  Aligned_cols=168  Identities=32%  Similarity=0.610  Sum_probs=149.2

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ....+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.||||+|+                  
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------   76 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ------------------   76 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCT------------------
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCC------------------
Confidence            35679999999999999999999999999888999998877778888999899999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           +++..++..++..+|++|+|||++++.+|+.+..|+..+....
T Consensus        77 -------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~  119 (187)
T 2a9k_A           77 -------------------------------------EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK  119 (187)
T ss_dssp             -------------------------------------TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------cccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence                                                 7788888999999999999999999999999999999998876


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      ...++|+++|+||+|+.+.                               +.+..+++..+++ ..++++++|||++|.|
T Consensus       120 ~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~g  167 (187)
T 2a9k_A          120 EDENVPFLLVGNKSDLEDK-------------------------------RQVSVEEAKNRAE-QWNVNYVETSAKTRAN  167 (187)
T ss_dssp             CCTTCCEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECCTTTCTT
T ss_pred             CCCCCCEEEEEECcccccc-------------------------------CccCHHHHHHHHH-HcCCeEEEeCCCCCCC
Confidence            5568999999999999765                               5677788888876 4567899999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy1524         299 ITQVFKELLVQAKVK  313 (592)
Q Consensus       299 VeeLf~~Li~~i~~~  313 (592)
                      |+++|+.|++.+...
T Consensus       168 i~~l~~~l~~~i~~~  182 (187)
T 2a9k_A          168 VDKVFFDLMREIRAR  182 (187)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998644

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.96  E-value=1.1e-27  Score=220.45  Aligned_cols=164  Identities=37%  Similarity=0.641  Sum_probs=146.7

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ..+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.||||+|+                    
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--------------------   61 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT--------------------   61 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCT--------------------
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCc--------------------
Confidence            468999999999999999999999999888889988877888889999999999999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         +++..+...++..+|++++|||++++.+++.+..|+..+......
T Consensus        62 -----------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  106 (167)
T 1kao_A           62 -----------------------------------EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY  106 (167)
T ss_dssp             -----------------------------------TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT
T ss_pred             -----------------------------------hhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC
Confidence                                               778888889999999999999999999999999999988876555


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      .+.|+++|+||+|+...                               +.++.+++..+++ ..+.++++|||++|.||+
T Consensus       107 ~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~  154 (167)
T 1kao_A          107 EKVPVILVGNKVDLESE-------------------------------REVSSSEGRALAE-EWGCPFMETSAKSKTMVD  154 (167)
T ss_dssp             SCCCEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HHTSCEEEECTTCHHHHH
T ss_pred             CCCCEEEEEECCccccc-------------------------------ccCCHHHHHHHHH-HhCCCEEEecCCCCcCHH
Confidence            68999999999999765                               5677778888776 346789999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         301 QVFKELLVQAK  311 (592)
Q Consensus       301 eLf~~Li~~i~  311 (592)
                      ++|+.+++.+.
T Consensus       155 ~l~~~l~~~~~  165 (167)
T 1kao_A          155 ELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998874

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=8.1e-28  Score=236.79  Aligned_cols=170  Identities=24%  Similarity=0.399  Sum_probs=138.2

Q ss_pred             CCCCcceEEEEEcCCCCcHHHHHHHHHcC--CCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524          57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG  134 (592)
Q Consensus        57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~  134 (592)
                      ......+||+|+|++|||||||+++|++.  .|...+.++..+++.+.+.+++..+.+.+|||+|.              
T Consensus        32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~--------------   97 (211)
T 2g3y_A           32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN--------------   97 (211)
T ss_dssp             ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTT--------------
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCC--------------
Confidence            34466799999999999999999999964  34555555444778888889999999999999998              


Q ss_pred             CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcc-hhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHH
Q psy1524         135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNE-FPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH  213 (592)
Q Consensus       135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~  213 (592)
                                                               +. +..+...+++.+|++|+|||++++.||+.+..|+..
T Consensus        98 -----------------------------------------~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~  136 (211)
T 2g3y_A           98 -----------------------------------------KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQ  136 (211)
T ss_dssp             -----------------------------------------THHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHH
T ss_pred             -----------------------------------------cchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHH
Confidence                                                     33 445666778899999999999999999999999988


Q ss_pred             HHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEccc
Q psy1524         214 IFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASA  293 (592)
Q Consensus       214 L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSA  293 (592)
                      +.+.....++|+||||||+||...                               +.++.+++..++. ..+++|++|||
T Consensus       137 l~~~~~~~~~piilVgNK~DL~~~-------------------------------r~v~~~e~~~~a~-~~~~~~~e~SA  184 (211)
T 2g3y_A          137 LRRARQTEDIPIILVGNKSDLVRC-------------------------------REVSVSEGRACAV-VFDCKFIETSA  184 (211)
T ss_dssp             HHTSGGGTTSCEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEECBT
T ss_pred             HHHHhCCCCCcEEEEEEChHHhcC-------------------------------ceEeHHHHHHHHH-HcCCEEEEEeC
Confidence            876533457999999999999765                               6677788777766 45678999999


Q ss_pred             CCCccHHHHHHHHHHHHHHh
Q psy1524         294 KDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       294 ktg~gVeeLf~~Li~~i~~~  313 (592)
                      ++|.||+++|+.+++.+...
T Consensus       185 k~g~~v~elf~~l~~~i~~~  204 (211)
T 2g3y_A          185 AVQHNVKELFEGIVRQVRLR  204 (211)
T ss_dssp             TTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999988543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.95  E-value=6.4e-28  Score=230.51  Aligned_cols=165  Identities=22%  Similarity=0.363  Sum_probs=141.1

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ....+||+|+|++|||||||+++|+++.+...+.+|+++.+...+.+++..+.++||||+|+                  
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------   79 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADL------------------   79 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-------------------
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCC------------------
Confidence            35679999999999999999999999999999999999777777888999999999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           ++|..+ ..+++.+|++|+|||++++.+|+.+..|+..+....
T Consensus        80 -------------------------------------~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~  121 (187)
T 3c5c_A           80 -------------------------------------DTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHA  121 (187)
T ss_dssp             ---------------------------------------CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------CcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence                                                 445444 457899999999999999999999999999887753


Q ss_pred             c--CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEccc-CC
Q psy1524         219 A--STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASA-KD  295 (592)
Q Consensus       219 ~--~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSA-kt  295 (592)
                      .  ..++|+|||+||+|+...                               +.++.+++..+++ ..++.|++||| ++
T Consensus       122 ~~~~~~~piilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~e~Sa~~~  169 (187)
T 3c5c_A          122 KETQRSIPALLLGNKLDMAQY-------------------------------RQVTKAEGVALAG-RFGCLFFEVSACLD  169 (187)
T ss_dssp             HHHCCCCCEEEEEECGGGGGG-------------------------------CSSCHHHHHHHHH-HHTCEEEECCSSSC
T ss_pred             hccCCCCCEEEEEECcchhhc-------------------------------CccCHHHHHHHHH-HcCCcEEEEeecCc
Confidence            1  258999999999999765                               6678888888887 44678999999 89


Q ss_pred             CccHHHHHHHHHHHHH
Q psy1524         296 NTNITQVFKELLVQAK  311 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~  311 (592)
                      |.||+++|+.+++.+.
T Consensus       170 g~gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          170 FEHVQHVFHEAVREAR  185 (187)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHh
Confidence            9999999999999874

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.95  E-value=1.6e-27  Score=222.12  Aligned_cols=167  Identities=25%  Similarity=0.399  Sum_probs=131.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ++.+||+|+|++|||||||+++|++..+...+..+..+.+...+.+++..+.+.+|||+|+                   
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------------------   62 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA-------------------   62 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC---------------------
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCC-------------------
Confidence            3568999999999999999999999887655443333667778888999999999999998                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcc--hhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNE--FPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                          +.  +..+...+++.+|++|+|||++++.+|+.+..|+..+...
T Consensus        63 ------------------------------------~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~  106 (175)
T 2nzj_A           63 ------------------------------------EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRT  106 (175)
T ss_dssp             -----------------------------------------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHC
T ss_pred             ------------------------------------CccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence                                                22  4566677889999999999999999999999999988775


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                      ....++|+|+|+||+|+.+.                               +.++.+++..++. ..+.++++|||++|.
T Consensus       107 ~~~~~~piilv~NK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~~g~  154 (175)
T 2nzj_A          107 HQADHVPIILVGNKADLARC-------------------------------REVSVEEGRACAV-VFDCKFIETSATLQH  154 (175)
T ss_dssp             C----CCEEEEEECTTCTTT-------------------------------CCSCHHHHHHHHH-HHTSEEEECBTTTTB
T ss_pred             hccCCCCEEEEEEChhhccc-------------------------------cccCHHHHHHHHH-HcCCeEEEEecCCCC
Confidence            44468999999999999765                               5677777777776 446789999999999


Q ss_pred             cHHHHHHHHHHHHHHh
Q psy1524         298 NITQVFKELLVQAKVK  313 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~  313 (592)
                      ||+++|+.+++.+...
T Consensus       155 gi~~l~~~l~~~~~~~  170 (175)
T 2nzj_A          155 NVAELFEGVVRQLRLR  170 (175)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999988544

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.95  E-value=2.2e-27  Score=221.63  Aligned_cols=166  Identities=25%  Similarity=0.401  Sum_probs=146.7

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ..++.+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.||||+|+                
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------------   74 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ----------------   74 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTG----------------
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCC----------------
Confidence            346789999999999999999999999999888888887 666777888999999999999999                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             +++..+...+++.+|++|+|||++++.+++.+..|+..+..
T Consensus        75 ---------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  115 (179)
T 1z0f_A           75 ---------------------------------------ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN  115 (179)
T ss_dssp             ---------------------------------------GGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             ---------------------------------------hHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHH
Confidence                                                   77888888999999999999999999999999999998877


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      . ...++|+++|+||+|+.+.                               +.++.+++..+++ ..++++++|||++|
T Consensus       116 ~-~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~  162 (179)
T 1z0f_A          116 L-TNPNTVIILIGNKADLEAQ-------------------------------RDVTYEEAKQFAE-ENGLLFLEASAKTG  162 (179)
T ss_dssp             H-SCTTCEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECCTTTC
T ss_pred             h-cCCCCcEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCCEEEEEeCCCC
Confidence            6 3468999999999999765                               5677788888877 45678999999999


Q ss_pred             ccHHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQAK  311 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~  311 (592)
                      .||+++|+.+++.+.
T Consensus       163 ~gi~~l~~~l~~~i~  177 (179)
T 1z0f_A          163 ENVEDAFLEAAKKIY  177 (179)
T ss_dssp             TTHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999998873

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.3e-27  Score=228.94  Aligned_cols=170  Identities=29%  Similarity=0.451  Sum_probs=142.1

Q ss_pred             CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524          56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG  134 (592)
Q Consensus        56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~  134 (592)
                      +...+..+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.||||+|+              
T Consensus        20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--------------   85 (192)
T 2il1_A           20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ--------------   85 (192)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCS--------------
T ss_pred             CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCc--------------
Confidence            34457789999999999999999999999988877777776 677778888998999999999999              


Q ss_pred             CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524         135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI  214 (592)
Q Consensus       135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L  214 (592)
                                                               +++..+...+++.+|++|+|||++++.+|+.+..|+..+
T Consensus        86 -----------------------------------------~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i  124 (192)
T 2il1_A           86 -----------------------------------------ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMI  124 (192)
T ss_dssp             -----------------------------------------GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             -----------------------------------------HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence                                                     788888899999999999999999999999999998888


Q ss_pred             HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524         215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK  294 (592)
Q Consensus       215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk  294 (592)
                      ... ...++|++||+||+|+...                               +.++.+++..+++......+++|||+
T Consensus       125 ~~~-~~~~~piilV~NK~Dl~~~-------------------------------~~v~~~~~~~~~~~~~~~~~~~~SA~  172 (192)
T 2il1_A          125 DKY-ASEDAELLLVGNKLDCETD-------------------------------REITRQQGEKFAQQITGMRFCEASAK  172 (192)
T ss_dssp             HHH-SCTTCEEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHHTSTTCEEEECBTT
T ss_pred             HHh-cCCCCcEEEEEECcccccc-------------------------------cccCHHHHHHHHHhcCCCeEEEEeCC
Confidence            765 4568999999999999765                               56778888888875457889999999


Q ss_pred             CCccHHHHHHHHHHHHHH
Q psy1524         295 DNTNITQVFKELLVQAKV  312 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i~~  312 (592)
                      +|.||+++|+.|++.+.+
T Consensus       173 ~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          173 DNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998854

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.1e-27  Score=232.83  Aligned_cols=171  Identities=31%  Similarity=0.442  Sum_probs=149.5

Q ss_pred             CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524          56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG  134 (592)
Q Consensus        56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~  134 (592)
                      +...++.+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.++||||+|+              
T Consensus        20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--------------   85 (201)
T 2ew1_A           20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ--------------   85 (201)
T ss_dssp             --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--------------
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc--------------
Confidence            34457789999999999999999999999999888888887 677778889999999999999999              


Q ss_pred             CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524         135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI  214 (592)
Q Consensus       135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L  214 (592)
                                                               ++|..+...+++.+|++|+|||++++.+|+.+..|+..+
T Consensus        86 -----------------------------------------~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i  124 (201)
T 2ew1_A           86 -----------------------------------------ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREI  124 (201)
T ss_dssp             -----------------------------------------GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             -----------------------------------------HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence                                                     788888888999999999999999999999999999988


Q ss_pred             HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524         215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK  294 (592)
Q Consensus       215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk  294 (592)
                      ... ...++|+|+|+||+|+.+.                               +.++.+++..+++ ..++.+++|||+
T Consensus       125 ~~~-~~~~~piilv~NK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~  171 (201)
T 2ew1_A          125 EQY-ASNKVITVLVGNKIDLAER-------------------------------REVSQQRAEEFSE-AQDMYYLETSAK  171 (201)
T ss_dssp             HHH-SCTTCEEEEEEECGGGGGG-------------------------------CSSCHHHHHHHHH-HHTCCEEECCTT
T ss_pred             HHh-cCCCCCEEEEEECCCCccc-------------------------------cccCHHHHHHHHH-HcCCEEEEEeCC
Confidence            775 3567899999999999765                               5677788888776 446789999999


Q ss_pred             CCccHHHHHHHHHHHHHHhc
Q psy1524         295 DNTNITQVFKELLVQAKVKY  314 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i~~~~  314 (592)
                      +|.||+++|+.+++.+..+.
T Consensus       172 ~g~gv~~l~~~l~~~i~~~~  191 (201)
T 2ew1_A          172 ESDNVEKLFLDLACRLISEA  191 (201)
T ss_dssp             TCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999986543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.95  E-value=2.6e-27  Score=225.43  Aligned_cols=170  Identities=30%  Similarity=0.482  Sum_probs=149.3

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .+..+||+|+|++|||||||+++|+++.+...+.+++. +.....+.+++..+.+.||||+|+                 
T Consensus        13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~-----------------   75 (196)
T 3tkl_A           13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ-----------------   75 (196)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCS-----------------
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCc-----------------
Confidence            35789999999999999999999999999888878776 677788889999999999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            +.+..+...++..+|++|+|||++++.+|+.+..|+..+...
T Consensus        76 --------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~  117 (196)
T 3tkl_A           76 --------------------------------------ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY  117 (196)
T ss_dssp             --------------------------------------GGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             --------------------------------------HhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence                                                  778888889999999999999999999999999999988776


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                       ...++|+|+|+||+|+...                               +.+..+++..++. ..++++++|||++|.
T Consensus       118 -~~~~~p~ilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~  164 (196)
T 3tkl_A          118 -ASENVNKLLVGNKCDLTTK-------------------------------KVVDYTTAKEFAD-SLGIPFLETSAKNAT  164 (196)
T ss_dssp             -SCTTCEEEEEEECTTCTTT-------------------------------CCSCHHHHHHHHH-HTTCCEEEECTTTCT
T ss_pred             -cCCCCCEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCCcEEEEeCCCCC
Confidence             4568999999999999866                               5677788888877 556789999999999


Q ss_pred             cHHHHHHHHHHHHHHhccc
Q psy1524         298 NITQVFKELLVQAKVKYNL  316 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~~~~  316 (592)
                      ||+++|+.+++.+......
T Consensus       165 gv~~l~~~l~~~i~~~~~~  183 (196)
T 3tkl_A          165 NVEQSFMTMAAEIKKRMGP  183 (196)
T ss_dssp             THHHHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHHHhcc
Confidence            9999999999999765443

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.95  E-value=4e-27  Score=225.95  Aligned_cols=168  Identities=32%  Similarity=0.610  Sum_probs=150.5

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ....+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.||||+|+                  
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------   72 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ------------------   72 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCT------------------
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCCh------------------
Confidence            35679999999999999999999999999988999999877788889999899999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           +++..+...++..+|++|+|||++++.+|+.+..|+..+....
T Consensus        73 -------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~  115 (206)
T 2bov_A           73 -------------------------------------EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK  115 (206)
T ss_dssp             -------------------------------------TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT
T ss_pred             -------------------------------------hhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence                                                 7788888999999999999999999999999999999998875


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      ...++|+|+|+||+|+...                               +.++.+++..+++ ..+.++++|||++|.|
T Consensus       116 ~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~g  163 (206)
T 2bov_A          116 EDENVPFLLVGNKSDLEDK-------------------------------RQVSVEEAKNRAE-QWNVNYVETSAKTRAN  163 (206)
T ss_dssp             TCSCCCEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEEECTTTCTT
T ss_pred             CCCCCCEEEEEeccCcccc-------------------------------ccccHHHHHHHHH-HhCCeEEEEeCCCCCC
Confidence            5568999999999999865                               5677788888876 4557899999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy1524         299 ITQVFKELLVQAKVK  313 (592)
Q Consensus       299 VeeLf~~Li~~i~~~  313 (592)
                      |+++|+.+++.+...
T Consensus       164 i~~l~~~l~~~i~~~  178 (206)
T 2bov_A          164 VDKVFFDLMREIRAR  178 (206)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999998654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.95  E-value=2.1e-27  Score=220.44  Aligned_cols=165  Identities=21%  Similarity=0.319  Sum_probs=131.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCce-eeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI-EEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt-~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      .+||+|+|++|||||||+++|++..+...+.++. .+.+...+.+++..+.+.+|||+|+                    
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--------------------   61 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ--------------------   61 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------------------
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCc--------------------
Confidence            5899999999999999999999877664444433 4777888889999999999999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhH-HHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPA-MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                         +++.. +...++..+|++|+|||++++.+|+.+..|+..+.....
T Consensus        62 -----------------------------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  106 (169)
T 3q85_A           62 -----------------------------------GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP  106 (169)
T ss_dssp             -------------------------------------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST
T ss_pred             -----------------------------------cccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhccc
Confidence                                               44443 556678899999999999999999999999999988654


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..++|+++|+||+|+.+.                               +.++.+++..+++ ..++++++|||++|.||
T Consensus       107 ~~~~p~ilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v  154 (169)
T 3q85_A          107 HHDLPVILVGNKSDLARS-------------------------------REVSLEEGRHLAG-TLSCKHIETSAALHHNT  154 (169)
T ss_dssp             TSCCCEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECBTTTTBSH
T ss_pred             CCCCCEEEEeeCcchhhc-------------------------------ccCCHHHHHHHHH-HcCCcEEEecCccCCCH
Confidence            458999999999999865                               6788888888887 55678999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy1524         300 TQVFKELLVQAKVK  313 (592)
Q Consensus       300 eeLf~~Li~~i~~~  313 (592)
                      +++|+.+++.+...
T Consensus       155 ~~l~~~l~~~i~~~  168 (169)
T 3q85_A          155 RELFEGAVRQIRLR  168 (169)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.95  E-value=1.7e-27  Score=220.55  Aligned_cols=164  Identities=24%  Similarity=0.389  Sum_probs=122.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      .+||+|+|++|||||||+++|++..+. ...++.+..+...+.+++..+.+.+|||+|+                     
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~---------------------   59 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ---------------------   59 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC-----------------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCC---------------------
Confidence            589999999999999999999976654 3345555556677788999999999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        +.+..+...++..+|++++|||++++.+|+.+..|+..+.......
T Consensus        60 ----------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  105 (166)
T 3q72_A           60 ----------------------------------DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTD  105 (166)
T ss_dssp             -----------------------------------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---
T ss_pred             ----------------------------------ccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence                                              6777788888999999999999999999999999999988765557


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|+++|+||+|+.+.                               +.++.+++..++. ..+.++++|||++|.||++
T Consensus       106 ~~p~ilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~  153 (166)
T 3q72_A          106 DVPIILVGNKSDLVRS-------------------------------REVSVDEGRACAV-VFDCKFIETSAALHHNVQA  153 (166)
T ss_dssp             CCCEEEEEECTTCCSS-------------------------------CCSCHHHHHHHHH-HTTCEEEECBGGGTBSHHH
T ss_pred             CCCEEEEEeccccccc-------------------------------cccCHHHHHHHHH-HhCCcEEEeccCCCCCHHH
Confidence            8999999999999866                               6678888888877 4567899999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy1524         302 VFKELLVQAKVK  313 (592)
Q Consensus       302 Lf~~Li~~i~~~  313 (592)
                      +|+.+++.+...
T Consensus       154 l~~~l~~~~~~~  165 (166)
T 3q72_A          154 LFEGVVRQIRLR  165 (166)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999988543

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.95  E-value=5.7e-28  Score=232.91  Aligned_cols=171  Identities=28%  Similarity=0.483  Sum_probs=141.1

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .....+||+|+|++|||||||+++|+++.+...+.+|+++.+...+.+++..+.+.||||+|+                 
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~-----------------   82 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQ-----------------   82 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCC-----------------
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCc-----------------
Confidence            345689999999999999999999999999988899998777777888888899999999998                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            +++..+...+++.+|++|+|||++++.+|+.+..|+..+...
T Consensus        83 --------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~  124 (201)
T 3oes_A           83 --------------------------------------DEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEG  124 (201)
T ss_dssp             --------------------------------------CTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-
T ss_pred             --------------------------------------cchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence                                                  555666667889999999999999999999999999998876


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                      ....++|+|+|+||+|+...                               +.++.+++..+++ ..++++++|||++|.
T Consensus       125 ~~~~~~piilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~  172 (201)
T 3oes_A          125 HGKTRVPVVLVGNKADLSPE-------------------------------REVQAVEGKKLAE-SWGATFMESSARENQ  172 (201)
T ss_dssp             ----CCCEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEECCTTCHH
T ss_pred             cCCCCCCEEEEEECccCccc-------------------------------cccCHHHHHHHHH-HhCCeEEEEeCCCCC
Confidence            55668999999999999866                               6778888888877 456789999999999


Q ss_pred             cHHHHHHHHHHHHHHhcc
Q psy1524         298 NITQVFKELLVQAKVKYN  315 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~~~  315 (592)
                      ||+++|+.+++.+.....
T Consensus       173 ~v~~l~~~l~~~i~~~~~  190 (201)
T 3oes_A          173 LTQGIFTKVIQEIARVEN  190 (201)
T ss_dssp             HHHHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHhhhh
Confidence            999999999999866543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.95  E-value=3e-27  Score=223.03  Aligned_cols=168  Identities=33%  Similarity=0.561  Sum_probs=147.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.++||||+|+                   
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~-------------------   62 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ-------------------   62 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------------
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCc-------------------
Confidence            3568999999999999999999999999989999998888888899999999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +++..+...++..+|++++|||++++.+|+.+..|+..+.....
T Consensus        63 ------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  106 (189)
T 4dsu_A           63 ------------------------------------EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD  106 (189)
T ss_dssp             ---------------------------------------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT
T ss_pred             ------------------------------------HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence                                                77788888999999999999999999999999999999988766


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..++|+++|+||+|+..                                +.+..+++..+++ ..+.++++|||++|.||
T Consensus       107 ~~~~p~i~v~nK~Dl~~--------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi  153 (189)
T 4dsu_A          107 SEDVPMVLVGNKCDLPS--------------------------------RTVDTKQAQDLAR-SYGIPFIETSAKTRQGV  153 (189)
T ss_dssp             CSCCCEEEEEECTTSSS--------------------------------CSSCHHHHHHHHH-HHTCCEEECCTTTCTTH
T ss_pred             CCCCcEEEEEECccCcc--------------------------------cccCHHHHHHHHH-HcCCeEEEEeCCCCCCH
Confidence            67899999999999974                                3556777787776 44678999999999999


Q ss_pred             HHHHHHHHHHHHHhcc
Q psy1524         300 TQVFKELLVQAKVKYN  315 (592)
Q Consensus       300 eeLf~~Li~~i~~~~~  315 (592)
                      +++|+.+++.+.....
T Consensus       154 ~~l~~~l~~~~~~~~~  169 (189)
T 4dsu_A          154 DDAFYTLVREIRKHKE  169 (189)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999976543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.95  E-value=3.3e-27  Score=222.95  Aligned_cols=170  Identities=26%  Similarity=0.377  Sum_probs=149.1

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ..++.+||+|+|++|||||||+++|+++.+...+.+|+. +.....+.+++..+.+.||||+|+                
T Consensus         6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------------   69 (186)
T 2bme_A            6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ----------------   69 (186)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCS----------------
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc----------------
Confidence            346789999999999999999999999999888888877 667778888998899999999999                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             +.+..+...++..+|++|+|||++++.+|+.+..|+..+..
T Consensus        70 ---------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  110 (186)
T 2bme_A           70 ---------------------------------------ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARM  110 (186)
T ss_dssp             ---------------------------------------GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             ---------------------------------------HHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence                                                   77888888899999999999999999999999999988877


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      . ...++|+++|+||+|+...                               +.++.+++..+++ ..++++++|||++|
T Consensus       111 ~-~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~  157 (186)
T 2bme_A          111 L-ASQNIVIILCGNKKDLDAD-------------------------------REVTFLEASRFAQ-ENELMFLETSALTG  157 (186)
T ss_dssp             H-SCTTCEEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECCTTTC
T ss_pred             h-cCCCCcEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCCEEEEecCCCC
Confidence            5 3468999999999999765                               5677778888876 45678999999999


Q ss_pred             ccHHHHHHHHHHHHHHhcc
Q psy1524         297 TNITQVFKELLVQAKVKYN  315 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~~~~~  315 (592)
                      .||+++|+.+++.+.....
T Consensus       158 ~gi~~l~~~l~~~~~~~~~  176 (186)
T 2bme_A          158 ENVEEAFVQCARKILNKIE  176 (186)
T ss_dssp             TTHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhh
Confidence            9999999999999876543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.95  E-value=9.7e-28  Score=234.81  Aligned_cols=183  Identities=19%  Similarity=0.335  Sum_probs=146.1

Q ss_pred             CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524          56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP  135 (592)
Q Consensus        56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~  135 (592)
                      .......+||+|+|++|||||||+++|+++.+...+.+|+++.+...+.+++..+.+.||||+|+               
T Consensus        21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~---------------   85 (214)
T 3q3j_B           21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGS---------------   85 (214)
T ss_dssp             ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCS---------------
T ss_pred             CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCC---------------
Confidence            34456789999999999999999999999999999999999877788888999999999999999               


Q ss_pred             CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHH-HHHHHHHH
Q psy1524         136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEE-IRLIRDHI  214 (592)
Q Consensus       136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~-l~~~l~~L  214 (592)
                                                              ++|..++..+++++|++|+|||++++.||+. +..|+..+
T Consensus        86 ----------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i  125 (214)
T 3q3j_B           86 ----------------------------------------PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI  125 (214)
T ss_dssp             ----------------------------------------GGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHH
T ss_pred             ----------------------------------------HhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHH
Confidence                                                    7777888888999999999999999999999 68899988


Q ss_pred             HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524         215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK  294 (592)
Q Consensus       215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk  294 (592)
                      ...  ..++|+|||+||+|+.++....                   ........+.++.+++..+++......|++|||+
T Consensus       126 ~~~--~~~~piilv~nK~Dl~~~~~~~-------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~  184 (214)
T 3q3j_B          126 LDY--CPSTRVLLIGCKTDLRTDLSTL-------------------MELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF  184 (214)
T ss_dssp             HHH--CTTSEEEEEEECGGGGGCHHHH-------------------HHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             HHh--CCCCCEEEEEEChhhccchhhh-------------------hhhcccccCccCHHHHHHHHHHcCCCEEEEeccC
Confidence            875  4689999999999997531000                   0000011267888999999885443389999999


Q ss_pred             CCcc-HHHHHHHHHHHHHHhc
Q psy1524         295 DNTN-ITQVFKELLVQAKVKY  314 (592)
Q Consensus       295 tg~g-VeeLf~~Li~~i~~~~  314 (592)
                      +|.| |+++|+.+++.+....
T Consensus       185 ~g~g~v~~lf~~l~~~~~~~~  205 (214)
T 3q3j_B          185 TSEKSIHSIFRTASMLCLNKP  205 (214)
T ss_dssp             TCHHHHHHHHHHHHHHHHC--
T ss_pred             CCcccHHHHHHHHHHHHhccC
Confidence            9998 9999999999986543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.95  E-value=5.2e-28  Score=228.22  Aligned_cols=167  Identities=32%  Similarity=0.505  Sum_probs=118.5

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .++.+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.++||||+|+                 
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----------------   67 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ-----------------   67 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC--------------------
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCC-----------------
Confidence            35789999999999999999999999988877888877 566777888999999999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            ++|..++..+++++|++|+|||++++.+|+.+..|+..+...
T Consensus        68 --------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~  109 (183)
T 2fu5_C           68 --------------------------------------ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH  109 (183)
T ss_dssp             --------------------------------------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence                                                  556666667789999999999999999999999999988775


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                       ...++|++||+||+|+.+.                               +.++.+++..+++ ..++++++|||++|.
T Consensus       110 -~~~~~piilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~  156 (183)
T 2fu5_C          110 -ASADVEKMILGNKCDVNDK-------------------------------RQVSKERGEKLAL-DYGIKFMETSAKANI  156 (183)
T ss_dssp             -SCTTCEEEEEEEC--CCSC-------------------------------CCSCHHHHHHHHH-HHTCEEEECCC---C
T ss_pred             -cCCCCCEEEEEECccCCcc-------------------------------CcCCHHHHHHHHH-HcCCeEEEEeCCCCC
Confidence             3467999999999999765                               5677888888876 446789999999999


Q ss_pred             cHHHHHHHHHHHHHHh
Q psy1524         298 NITQVFKELLVQAKVK  313 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~  313 (592)
                      ||+++|+.+++.+..+
T Consensus       157 ~i~~l~~~l~~~i~~~  172 (183)
T 2fu5_C          157 NVENAFFTLARDIKAK  172 (183)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999998654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.95  E-value=2.5e-27  Score=226.31  Aligned_cols=171  Identities=26%  Similarity=0.386  Sum_probs=144.2

Q ss_pred             CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524          56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG  134 (592)
Q Consensus        56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~  134 (592)
                      .....+.+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.++||||+|+              
T Consensus        15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--------------   80 (191)
T 2a5j_A           15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ--------------   80 (191)
T ss_dssp             CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTG--------------
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCc--------------
Confidence            33456789999999999999999999999998877777776 666778888999999999999999              


Q ss_pred             CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524         135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI  214 (592)
Q Consensus       135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L  214 (592)
                                                               ++|..+...+++.+|++|+|||++++.+|+.+..|+..+
T Consensus        81 -----------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i  119 (191)
T 2a5j_A           81 -----------------------------------------ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDA  119 (191)
T ss_dssp             -----------------------------------------GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             -----------------------------------------hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence                                                     666777778899999999999999999999999999988


Q ss_pred             HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524         215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK  294 (592)
Q Consensus       215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk  294 (592)
                      ... ...++|+++|+||+|+...                               +.++.+++..+++ ..++.+++|||+
T Consensus       120 ~~~-~~~~~piilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~  166 (191)
T 2a5j_A          120 RQH-SSSNMVIMLIGNKSDLESR-------------------------------RDVKREEGEAFAR-EHGLIFMETSAK  166 (191)
T ss_dssp             HHH-SCTTCEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEEECTT
T ss_pred             HHh-cCCCCCEEEEEECcccCCc-------------------------------cccCHHHHHHHHH-HcCCEEEEEeCC
Confidence            775 3568999999999999765                               5677788888876 456789999999


Q ss_pred             CCccHHHHHHHHHHHHHHhc
Q psy1524         295 DNTNITQVFKELLVQAKVKY  314 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i~~~~  314 (592)
                      +|.||+++|+.|++.+..+.
T Consensus       167 ~~~gi~~l~~~l~~~i~~~~  186 (191)
T 2a5j_A          167 TACNVEEAFINTAKEIYRKI  186 (191)
T ss_dssp             TCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999986543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.95  E-value=3.6e-27  Score=224.98  Aligned_cols=171  Identities=27%  Similarity=0.430  Sum_probs=147.6

Q ss_pred             CCCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCccccccccc
Q psy1524          55 SSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLW  133 (592)
Q Consensus        55 ~~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~  133 (592)
                      ..+..++.+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.+.||||+|+             
T Consensus        18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-------------   84 (193)
T 2oil_A           18 GSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL-------------   84 (193)
T ss_dssp             --CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCC-------------
T ss_pred             cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCc-------------
Confidence            345567789999999999999999999999999888888876 566677888888999999999999             


Q ss_pred             CCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHH
Q psy1524         134 GPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH  213 (592)
Q Consensus       134 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~  213 (592)
                                                                +++..++..++..+|++|+|||++++.+|..+..|+..
T Consensus        85 ------------------------------------------~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~  122 (193)
T 2oil_A           85 ------------------------------------------ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKE  122 (193)
T ss_dssp             ------------------------------------------CTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHH
T ss_pred             ------------------------------------------hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHH
Confidence                                                      66777888899999999999999999999999999988


Q ss_pred             HHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEccc
Q psy1524         214 IFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASA  293 (592)
Q Consensus       214 L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSA  293 (592)
                      +... ...++|+++|+||+|+...                               +.+..+++..++. ..++.+++|||
T Consensus       123 i~~~-~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa  169 (193)
T 2oil_A          123 LYDH-AEATIVVMLVGNKSDLSQA-------------------------------REVPTEEARMFAE-NNGLLFLETSA  169 (193)
T ss_dssp             HHTT-SCTTCEEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEEECT
T ss_pred             HHHh-cCCCCeEEEEEECCCcccc-------------------------------cccCHHHHHHHHH-HcCCEEEEEeC
Confidence            8765 3467899999999999765                               5667778888876 45678999999


Q ss_pred             CCCccHHHHHHHHHHHHHHh
Q psy1524         294 KDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       294 ktg~gVeeLf~~Li~~i~~~  313 (592)
                      ++|.||+++|+.|++.+..+
T Consensus       170 ~~~~gi~~l~~~l~~~i~~~  189 (193)
T 2oil_A          170 LDSTNVELAFETVLKEIFAK  189 (193)
T ss_dssp             TTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999988654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=5.2e-27  Score=224.97  Aligned_cols=166  Identities=31%  Similarity=0.508  Sum_probs=146.3

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.||||+|+                   
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~-------------------   86 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQ-------------------   86 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCC-------------------
Confidence            4569999999999999999999999999888899998777777888999999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +. ..+...++..+|++|+|||++++.+|+.+..|+..+.....
T Consensus        87 ------------------------------------~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~  129 (196)
T 2atv_A           87 ------------------------------------ED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK  129 (196)
T ss_dssp             ------------------------------------CC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT
T ss_pred             ------------------------------------Cc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC
Confidence                                                33 55677789999999999999999999999999999888655


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc-c
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT-N  298 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~-g  298 (592)
                      ..++|+|+|+||+|+.+.                               +.++.+++..+++ ..++++++|||++|. |
T Consensus       130 ~~~~piilv~NK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~~g~~g  177 (196)
T 2atv_A          130 PKNVTLILVGNKADLDHS-------------------------------RQVSTEEGEKLAT-ELACAFYECSACTGEGN  177 (196)
T ss_dssp             TSCCCEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HHTSEEEECCTTTCTTC
T ss_pred             CCCCcEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HhCCeEEEECCCcCCcC
Confidence            578999999999999765                               5677888888877 446789999999999 9


Q ss_pred             HHHHHHHHHHHHHHh
Q psy1524         299 ITQVFKELLVQAKVK  313 (592)
Q Consensus       299 VeeLf~~Li~~i~~~  313 (592)
                      |+++|+.+++.+.++
T Consensus       178 i~~l~~~l~~~i~~~  192 (196)
T 2atv_A          178 ITEIFYELCREVRRR  192 (196)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999998654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.95  E-value=2.7e-27  Score=226.32  Aligned_cols=170  Identities=24%  Similarity=0.353  Sum_probs=146.6

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .....+||+|+|++|||||||+++|+++.+...+.+|+++.+...+.+++..+.++||||+|+                 
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~-----------------   81 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ-----------------   81 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCS-----------------
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCc-----------------
Confidence            446789999999999999999999999999989999999888788889999999999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH-HHHHHHHHH
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIFE  216 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L~~  216 (592)
                                                            ++|..++..+++++|++|+|||++++.+|+.+ ..|+..+..
T Consensus        82 --------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  123 (194)
T 3reg_A           82 --------------------------------------EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH  123 (194)
T ss_dssp             --------------------------------------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             --------------------------------------HHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence                                                  77777888889999999999999999999997 667777765


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      .  ..++|+|+|+||+|+.+..                             .+.+..+++..+++......+++|||++|
T Consensus       124 ~--~~~~p~ilv~nK~Dl~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  172 (194)
T 3reg_A          124 Y--IDTAKTVLVGLKVDLRKDG-----------------------------SDDVTKQEGDDLCQKLGCVAYIEASSVAK  172 (194)
T ss_dssp             H--CTTSEEEEEEECGGGCCTT-----------------------------TTCCCHHHHHHHHHHHTCSCEEECBTTTT
T ss_pred             h--CCCCCEEEEEEChhhccCC-----------------------------CCcccHHHHHHHHHhcCCCEEEEeecCCC
Confidence            4  4679999999999997541                             16678888888887544334999999999


Q ss_pred             ccHHHHHHHHHHHHHHh
Q psy1524         297 TNITQVFKELLVQAKVK  313 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~~~  313 (592)
                      .||+++|+.+++.+...
T Consensus       173 ~gi~~l~~~l~~~i~~~  189 (194)
T 3reg_A          173 IGLNEVFEKSVDCIFSN  189 (194)
T ss_dssp             BSHHHHHHHHHHHHHCS
T ss_pred             CCHHHHHHHHHHHHHhc
Confidence            99999999999998644

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.95  E-value=1.8e-27  Score=220.80  Aligned_cols=164  Identities=28%  Similarity=0.440  Sum_probs=138.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ++.+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.||||+|+                  
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------   65 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ------------------   65 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC------------------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCc------------------
Confidence            5679999999999999999999999999888888887 566677888999999999999998                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           +++..+...+++.+|++|+|||++++.+++.+..|+..+....
T Consensus        66 -------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  108 (170)
T 1z08_A           66 -------------------------------------ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML  108 (170)
T ss_dssp             --------------------------------------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------HhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence                                                 5566666677899999999999999999999999998887653


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                       ..++|+++|+||+|+.+.                               +.++.+++..+++ ..+.++++|||++|.|
T Consensus       109 -~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~g  155 (170)
T 1z08_A          109 -GNEICLCIVGNKIDLEKE-------------------------------RHVSIQEAESYAE-SVGAKHYHTSAKQNKG  155 (170)
T ss_dssp             -GGGSEEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEEEBTTTTBS
T ss_pred             -CCCCeEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCCeEEEecCCCCCC
Confidence             357899999999999765                               5677788888877 4567899999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQAK  311 (592)
Q Consensus       299 VeeLf~~Li~~i~  311 (592)
                      |+++|+.+++.+.
T Consensus       156 i~~l~~~l~~~~~  168 (170)
T 1z08_A          156 IEELFLDLCKRMI  168 (170)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999874

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.95  E-value=4.2e-27  Score=217.53  Aligned_cols=163  Identities=28%  Similarity=0.452  Sum_probs=143.1

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ...+||+|+|++|||||||+++|+++.+...+.++++ +.....+.+++..+.+.||||+|+                  
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~------------------   65 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ------------------   65 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS------------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc------------------
Confidence            4679999999999999999999999998887778877 555677788888999999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           +++..+...++..+|++|+|||++++.+++.+..|+..+... 
T Consensus        66 -------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-  107 (170)
T 1r2q_A           66 -------------------------------------ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ-  107 (170)
T ss_dssp             -------------------------------------GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-
T ss_pred             -------------------------------------HHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-
Confidence                                                 778888888999999999999999999999999999988776 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      ...++|+++|+||+|+...                               +.++.+++..++. ....++++|||++|.|
T Consensus       108 ~~~~~~iilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~g  155 (170)
T 1r2q_A          108 ASPNIVIALSGNKADLANK-------------------------------RAVDFQEAQSYAD-DNSLLFMETSAKTSMN  155 (170)
T ss_dssp             SCTTCEEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECCTTTCTT
T ss_pred             cCCCCcEEEEEECccCccc-------------------------------cccCHHHHHHHHH-HcCCeEEEEeCCCCCC
Confidence            3568999999999999765                               5667778888876 4567899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQA  310 (592)
Q Consensus       299 VeeLf~~Li~~i  310 (592)
                      |+++|+.|++.+
T Consensus       156 i~~l~~~i~~~~  167 (170)
T 1r2q_A          156 VNEIFMAIAKKL  167 (170)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHH
Confidence            999999998765

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.95  E-value=5.9e-27  Score=221.38  Aligned_cols=170  Identities=24%  Similarity=0.372  Sum_probs=146.1

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeE-EEEEeeCCe---------EEEEEEEeCCCCCCCCcc
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMH-HEDFSMNGV---------HLKLDILDTSGEQSGKGL  126 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~-~~~v~vdg~---------~v~L~I~DT~G~~~~~~~  126 (592)
                      ..+..+||+|+|++|||||||+++|+++.+...+.+|++ ++. ...+.+++.         .+.+.||||+|+      
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------   80 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL------   80 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCS------
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCc------
Confidence            456789999999999999999999999999888888887 444 456666665         788999999999      


Q ss_pred             cccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHH
Q psy1524         127 KCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEE  206 (592)
Q Consensus       127 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~  206 (592)
                                                                       +++..+...++..+|++|+|||++++.+++.
T Consensus        81 -------------------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~  111 (195)
T 3bc1_A           81 -------------------------------------------------ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLN  111 (195)
T ss_dssp             -------------------------------------------------GGGHHHHHHTTTTCSEEEEEEETTCHHHHHT
T ss_pred             -------------------------------------------------HHHHHHHHHHHcCCCEEEEEEECCCHHHHHH
Confidence                                                             7888888999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCC
Q psy1524         207 IRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWEN  286 (592)
Q Consensus       207 l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~  286 (592)
                      +..|+..+.......++|+++|+||+|+.+.                               +.+..+++..++. ..++
T Consensus       112 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~  159 (195)
T 3bc1_A          112 VRNWISQLQMHAYSENPDIVLCGNKSDLEDQ-------------------------------RAVKEEEARELAE-KYGI  159 (195)
T ss_dssp             HHHHHHHHHHHSSSSSCCEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTC
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCC
Confidence            9999998887644468999999999999765                               5667778888876 3456


Q ss_pred             eEEEcccCCCccHHHHHHHHHHHHHHhc
Q psy1524         287 GFVEASAKDNTNITQVFKELLVQAKVKY  314 (592)
Q Consensus       287 ~~~EvSAktg~gVeeLf~~Li~~i~~~~  314 (592)
                      ++++|||++|.||+++|+.|++.+..+.
T Consensus       160 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  187 (195)
T 3bc1_A          160 PYFETSAANGTNISHAIEMLLDLIMKRM  187 (195)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            8999999999999999999999986543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.95  E-value=5.8e-27  Score=223.10  Aligned_cols=170  Identities=29%  Similarity=0.496  Sum_probs=145.4

Q ss_pred             CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524          56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG  134 (592)
Q Consensus        56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~  134 (592)
                      ....++.+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.+.||||+|+              
T Consensus        16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------------   81 (189)
T 2gf9_A           16 PRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ--------------   81 (189)
T ss_dssp             CTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSC--------------
T ss_pred             CcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCc--------------
Confidence            33456789999999999999999999999999888788877 555677778888899999999998              


Q ss_pred             CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524         135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI  214 (592)
Q Consensus       135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L  214 (592)
                                                               +++..+...++..+|++|+|||++++.+|+.+..|+..+
T Consensus        82 -----------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i  120 (189)
T 2gf9_A           82 -----------------------------------------ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI  120 (189)
T ss_dssp             -----------------------------------------CSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             -----------------------------------------HHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence                                                     555556667789999999999999999999999999988


Q ss_pred             HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524         215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK  294 (592)
Q Consensus       215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk  294 (592)
                      ... ...++|+++|+||+|+...                               +.++.+++..+++ ..++++++|||+
T Consensus       121 ~~~-~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~  167 (189)
T 2gf9_A          121 KTY-SWDNAQVILVGNKCDLEDE-------------------------------RVVPAEDGRRLAD-DLGFEFFEASAK  167 (189)
T ss_dssp             HHH-SCTTCEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEECBTT
T ss_pred             HHh-cCCCCCEEEEEECcccccc-------------------------------cCCCHHHHHHHHH-HcCCeEEEEECC
Confidence            775 3468999999999999765                               5667778888876 446789999999


Q ss_pred             CCccHHHHHHHHHHHHHHh
Q psy1524         295 DNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i~~~  313 (592)
                      +|.||+++|+.+++.+.++
T Consensus       168 ~g~gi~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          168 ENINVKQVFERLVDVICEK  186 (189)
T ss_dssp             TTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.95  E-value=9.1e-27  Score=217.81  Aligned_cols=167  Identities=28%  Similarity=0.512  Sum_probs=143.4

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ....+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.||||+|+                 
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~-----------------   66 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ-----------------   66 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCc-----------------
Confidence            45679999999999999999999999998888888887 566778888999899999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            +++..++..++..+|++|+|||+++..+++.+..|+..+...
T Consensus        67 --------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~  108 (177)
T 1wms_A           67 --------------------------------------ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYY  108 (177)
T ss_dssp             --------------------------------------GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             --------------------------------------hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHH
Confidence                                                  778888888999999999999999999999999999988775


Q ss_pred             hc---CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524         218 KA---STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK  294 (592)
Q Consensus       218 ~~---~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk  294 (592)
                      ..   ..++|+++|+||+|+. .                               +.++.+++..+++.....++++|||+
T Consensus       109 ~~~~~~~~~p~i~v~nK~Dl~-~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~  156 (177)
T 1wms_A          109 ADVKEPESFPFVILGNKIDIS-E-------------------------------RQVSTEEAQAWCRDNGDYPYFETSAK  156 (177)
T ss_dssp             HTCSCTTTSCEEEEEECTTCS-S-------------------------------CSSCHHHHHHHHHHTTCCCEEECCTT
T ss_pred             ccccccCCCcEEEEEECCccc-c-------------------------------cccCHHHHHHHHHhcCCceEEEEeCC
Confidence            32   2678999999999987 3                               45677888888875667889999999


Q ss_pred             CCccHHHHHHHHHHHHHH
Q psy1524         295 DNTNITQVFKELLVQAKV  312 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i~~  312 (592)
                      +|.||+++|+.+++.+..
T Consensus       157 ~~~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          157 DATNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             TCTTHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999998854

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=9.9e-28  Score=229.10  Aligned_cols=169  Identities=27%  Similarity=0.466  Sum_probs=149.6

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ..++.+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.||||+|+                
T Consensus        19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------------   82 (191)
T 3dz8_A           19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ----------------   82 (191)
T ss_dssp             EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH----------------
T ss_pred             ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh----------------
Confidence            446789999999999999999999999998888888877 667777888888899999999998                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             +.+..+...+++.+|++|+|||++++.+|+.+..|+..+..
T Consensus        83 ---------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  123 (191)
T 3dz8_A           83 ---------------------------------------ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKT  123 (191)
T ss_dssp             ---------------------------------------HHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             ---------------------------------------HHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence                                                   78888999999999999999999999999999999999877


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      . ...++|+|+|+||+|+...                               +.+..+++..+++ ..++++++|||++|
T Consensus       124 ~-~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~  170 (191)
T 3dz8_A          124 Y-SWDNAQVILVGNKCDMEEE-------------------------------RVVPTEKGQLLAE-QLGFDFFEASAKEN  170 (191)
T ss_dssp             H-SCTTCEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEECBTTTT
T ss_pred             h-cCCCCCEEEEEECCCCccc-------------------------------cccCHHHHHHHHH-HcCCeEEEEECCCC
Confidence            5 4568999999999999766                               6677888888877 45678999999999


Q ss_pred             ccHHHHHHHHHHHHHHhc
Q psy1524         297 TNITQVFKELLVQAKVKY  314 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~~~~  314 (592)
                      .||+++|+.+++.+..+.
T Consensus       171 ~gi~~l~~~l~~~i~~~~  188 (191)
T 3dz8_A          171 ISVRQAFERLVDAICDKM  188 (191)
T ss_dssp             BSHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhc
Confidence            999999999999986653

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.95  E-value=6e-27  Score=225.42  Aligned_cols=168  Identities=24%  Similarity=0.405  Sum_probs=135.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc--CCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY--NTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~--~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      +..+||+|+|++|||||||+|+|++  ..|.+.+.++..+++.+.+.+++..+.+.+|||+|.                 
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~-----------------   66 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN-----------------   66 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-----------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccC-----------------
Confidence            4569999999999999999999995  345555555445777888899999999999999998                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcc-hhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNE-FPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                            +. +..+...+++.+|++|+|||++++.||+.+..|+..+..
T Consensus        67 --------------------------------------~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~  108 (192)
T 2cjw_A           67 --------------------------------------KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRR  108 (192)
T ss_dssp             ------------------------------------------CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------cchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence                                                  11 223445678889999999999999999999999988877


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      .....++|+|+|+||+|+..+                               +.+..+++..++. ..++.|++|||++|
T Consensus       109 ~~~~~~~piilV~NK~Dl~~~-------------------------------r~v~~~~~~~~a~-~~~~~~~e~SA~~g  156 (192)
T 2cjw_A          109 ARQTEDIPIILVGNKSDLVRX-------------------------------REVSVSEGRAXAV-VFDXKFIETSAAVQ  156 (192)
T ss_dssp             HTTTSCCCEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECBTTTT
T ss_pred             hhCCCCCeEEEEEechhhhcc-------------------------------ccccHHHHHHHHH-HhCCceEEeccccC
Confidence            544467999999999999765                               5677777777765 45678999999999


Q ss_pred             ccHHHHHHHHHHHHHHhc
Q psy1524         297 TNITQVFKELLVQAKVKY  314 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~~~~  314 (592)
                      .||+++|+.+++.+....
T Consensus       157 ~~v~~lf~~l~~~~~~~~  174 (192)
T 2cjw_A          157 HNVKELFEGIVRQVRLRR  174 (192)
T ss_dssp             BSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhc
Confidence            999999999999986543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=7e-27  Score=219.16  Aligned_cols=168  Identities=27%  Similarity=0.466  Sum_probs=137.6

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP  135 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~  135 (592)
                      ..+..+||+|+|++|||||||+++|+++.+. ..+.+|++ +.....+.+++..+.+.||||+|+               
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~---------------   70 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ---------------   70 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc---------------
Confidence            3467899999999999999999999998885 46677777 555666788999999999999999               


Q ss_pred             CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524         136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF  215 (592)
Q Consensus       136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~  215 (592)
                                                              +++..+...++..+|++|+|||++++.+++.+..|+..+.
T Consensus        71 ----------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~  110 (180)
T 2g6b_A           71 ----------------------------------------ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIH  110 (180)
T ss_dssp             ------------------------------------------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             ----------------------------------------HHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence                                                    6677777788999999999999999999999999999887


Q ss_pred             HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524         216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD  295 (592)
Q Consensus       216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt  295 (592)
                      .. ...++|+++|+||+|+...                               +.+..+++..+++ ..+.++++|||++
T Consensus       111 ~~-~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~  157 (180)
T 2g6b_A          111 EY-AQHDVALMLLGNKVDSAHE-------------------------------RVVKREDGEKLAK-EYGLPFMETSAKT  157 (180)
T ss_dssp             HH-SCTTCEEEEEEECCSTTSC-------------------------------CCSCHHHHHHHHH-HHTCCEEECCTTT
T ss_pred             Hh-CCCCCcEEEEEECcccCcc-------------------------------cccCHHHHHHHHH-HcCCeEEEEeCCC
Confidence            76 3468999999999999865                               5677778888876 3456899999999


Q ss_pred             CccHHHHHHHHHHHHHHh
Q psy1524         296 NTNITQVFKELLVQAKVK  313 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~~~  313 (592)
                      |.||+++|+.+++.+...
T Consensus       158 ~~gi~~l~~~l~~~~~~~  175 (180)
T 2g6b_A          158 GLNVDLAFTAIAKELKRR  175 (180)
T ss_dssp             CTTHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999988543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.95  E-value=6.9e-27  Score=219.39  Aligned_cols=165  Identities=26%  Similarity=0.437  Sum_probs=144.7

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ....+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.||||+|+                 
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~-----------------   71 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ-----------------   71 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCS-----------------
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCC-----------------
Confidence            35679999999999999999999999999887778877 566777888988899999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            +++..++..+++.+|++|+|||++++.+|+.+..|+..+...
T Consensus        72 --------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  113 (181)
T 2efe_B           72 --------------------------------------ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQ  113 (181)
T ss_dssp             --------------------------------------GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence                                                  777788888999999999999999999999999999988876


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                       ...++|+++|+||+|+.+.                               +.++.+++..+++ ..+.++++|||++|.
T Consensus       114 -~~~~~p~i~v~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~  160 (181)
T 2efe_B          114 -GNPNMVMALAGNKSDLLDA-------------------------------RKVTAEDAQTYAQ-ENGLFFMETSAKTAT  160 (181)
T ss_dssp             -SCTTCEEEEEEECTTCTTT-------------------------------CCSCHHHHHHHHH-HTTCEEEECCSSSCT
T ss_pred             -cCCCCcEEEEEECCccccc-------------------------------ccCCHHHHHHHHH-HcCCEEEEEECCCCC
Confidence             3468999999999999765                               5677788888876 456789999999999


Q ss_pred             cHHHHHHHHHHHHH
Q psy1524         298 NITQVFKELLVQAK  311 (592)
Q Consensus       298 gVeeLf~~Li~~i~  311 (592)
                      ||+++|+.|++.+.
T Consensus       161 gi~~l~~~l~~~~~  174 (181)
T 2efe_B          161 NVKEIFYEIARRLP  174 (181)
T ss_dssp             THHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999988763

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.95  E-value=1e-26  Score=223.51  Aligned_cols=167  Identities=29%  Similarity=0.468  Sum_probs=146.9

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .++.+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.+.||||+|+                 
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----------------   67 (203)
T 1zbd_A            5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGL-----------------   67 (203)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCS-----------------
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCc-----------------
Confidence            45789999999999999999999999999888888877 566677788898999999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            +++..++..+++.+|++|+|||++++.+|+.+..|+..+...
T Consensus        68 --------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~  109 (203)
T 1zbd_A           68 --------------------------------------ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY  109 (203)
T ss_dssp             --------------------------------------GGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------hhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence                                                  778888889999999999999999999999999999988775


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                       ...++|+|+|+||+|+...                               +.++.+++..+++ ..++++++|||++|.
T Consensus       110 -~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  156 (203)
T 1zbd_A          110 -SWDNAQVLLVGNKCDMEDE-------------------------------RVVSSERGRQLAD-HLGFEFFEASAKDNI  156 (203)
T ss_dssp             -SCSSCEEEEEEECTTCTTS-------------------------------CCSCHHHHHHHHH-HHTCEEEECBTTTTB
T ss_pred             -cCCCCCEEEEEECcccCcc-------------------------------cccCHHHHHHHHH-HCCCeEEEEECCCCC
Confidence             3467899999999999765                               5677788888877 446789999999999


Q ss_pred             cHHHHHHHHHHHHHHh
Q psy1524         298 NITQVFKELLVQAKVK  313 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~  313 (592)
                      ||+++|+.|++.+..+
T Consensus       157 gi~~l~~~l~~~i~~~  172 (203)
T 1zbd_A          157 NVKQTFERLVDVICEK  172 (203)
T ss_dssp             SSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999988664

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.95  E-value=6.3e-27  Score=222.83  Aligned_cols=166  Identities=25%  Similarity=0.436  Sum_probs=143.0

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ....+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.+.||||+|+                 
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----------------   79 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ-----------------   79 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCS-----------------
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc-----------------
Confidence            35679999999999999999999999999888888887 677778888998899999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchh-HHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFP-AMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                            +++. .+...+++.+|++|+|||++++.+|+.+..|+..+..
T Consensus        80 --------------------------------------~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~  121 (189)
T 1z06_A           80 --------------------------------------ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQ  121 (189)
T ss_dssp             --------------------------------------HHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             --------------------------------------hhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence                                                  6777 7788899999999999999999999999999999988


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      .....++|+|+|+||+|+.+.                               +.++.+++..+++ ..++.+++|||++|
T Consensus       122 ~~~~~~~piilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~~~  169 (189)
T 1z06_A          122 HLLANDIPRILVGNKCDLRSA-------------------------------IQVPTDLAQKFAD-THSMPLFETSAKNP  169 (189)
T ss_dssp             HCCCSCCCEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HTTCCEEECCSSSG
T ss_pred             hcCCCCCCEEEEEECcccccc-------------------------------ceeCHHHHHHHHH-HcCCEEEEEeCCcC
Confidence            754678999999999999765                               5677788888876 45678999999999


Q ss_pred             ---ccHHHHHHHHHHHHH
Q psy1524         297 ---TNITQVFKELLVQAK  311 (592)
Q Consensus       297 ---~gVeeLf~~Li~~i~  311 (592)
                         .||+++|+.|++.+.
T Consensus       170 ~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          170 NDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             GGGSCHHHHHHHHC----
T ss_pred             CcccCHHHHHHHHHHHHh
Confidence               999999999988763

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=5.4e-27  Score=223.94  Aligned_cols=177  Identities=21%  Similarity=0.408  Sum_probs=146.6

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ....+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.++||||+|+                  
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~------------------   76 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ------------------   76 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCS------------------
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCC------------------
Confidence            35679999999999999999999999999989999999877778888998999999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFET  217 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~  217 (592)
                                                           ++|..++..+++++|++|+|||++++.+|+.+. .|+..+...
T Consensus        77 -------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  119 (194)
T 2atx_A           77 -------------------------------------EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY  119 (194)
T ss_dssp             -------------------------------------SSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH
T ss_pred             -------------------------------------cchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence                                                 566667777899999999999999999999997 688888775


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                        ..++|+++|+||+|+.+.....        ..+.           ....+.++.+++..+++......|++|||++|.
T Consensus       120 --~~~~piilv~nK~Dl~~~~~~~--------~~~~-----------~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~  178 (194)
T 2atx_A          120 --APNVPFLLIGTQIDLRDDPKTL--------ARLN-----------DMKEKPICVEQGQKLAKEIGACCYVECSALTQK  178 (194)
T ss_dssp             --STTCCEEEEEECTTSTTCHHHH--------HHHT-----------TTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCT
T ss_pred             --CCCCCEEEEEEChhhcccccch--------hhcc-----------cccCcccCHHHHHHHHHHcCCcEEEEeeCCCCC
Confidence              3589999999999997642100        0000           011257888888888875544489999999999


Q ss_pred             cHHHHHHHHHHHHH
Q psy1524         298 NITQVFKELLVQAK  311 (592)
Q Consensus       298 gVeeLf~~Li~~i~  311 (592)
                      ||+++|+.+++.+.
T Consensus       179 gi~~l~~~l~~~i~  192 (194)
T 2atx_A          179 GLKTVFDEAIIAIL  192 (194)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998874

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.95  E-value=1e-26  Score=215.27  Aligned_cols=163  Identities=28%  Similarity=0.416  Sum_probs=143.7

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ++.+||+|+|++|||||||+++|+++.+...+.++++ +.....+.+++..+.+.||||+|+                  
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~------------------   65 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL------------------   65 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS------------------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCc------------------
Confidence            4679999999999999999999999998888888887 556677788888899999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           +++..+...++..+|++|+|||++++.+++.+..|+..+... 
T Consensus        66 -------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~-  107 (170)
T 1z0j_A           66 -------------------------------------ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-  107 (170)
T ss_dssp             -------------------------------------GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-
T ss_pred             -------------------------------------hhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-
Confidence                                                 777788888999999999999999999999999999988775 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      ....+|+++|+||+|+.+.                               +.+..+++..+++ ....+++++||++|.|
T Consensus       108 ~~~~~~iilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~  155 (170)
T 1z0j_A          108 GPPSIVVAIAGNKCDLTDV-------------------------------REVMERDAKDYAD-SIHAIFVETSAKNAIN  155 (170)
T ss_dssp             SCTTSEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECBTTTTBS
T ss_pred             CCCCCcEEEEEECCccccc-------------------------------cccCHHHHHHHHH-HcCCEEEEEeCCCCcC
Confidence            4578999999999999865                               5677788888876 4567899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQA  310 (592)
Q Consensus       299 VeeLf~~Li~~i  310 (592)
                      |+++|+.+++.+
T Consensus       156 i~~l~~~i~~~i  167 (170)
T 1z0j_A          156 INELFIEISRRI  167 (170)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH
Confidence            999999998875

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.95  E-value=4.6e-27  Score=225.62  Aligned_cols=180  Identities=24%  Similarity=0.414  Sum_probs=138.5

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .....+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.++||||+|+                 
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~-----------------   78 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQ-----------------   78 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCS-----------------
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCC-----------------
Confidence            446779999999999999999999999999888999999888888889999999999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHH
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFE  216 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~  216 (592)
                                                            ++|..++..++.++|++|+|||++++.+|+.+. .|+..+..
T Consensus        79 --------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~  120 (201)
T 2q3h_A           79 --------------------------------------DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC  120 (201)
T ss_dssp             --------------------------------------TTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             --------------------------------------HHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence                                                  556666677899999999999999999999997 68888876


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      .  ..++|+|||+||+|+........        .+           .....+.++.+++..+++......|++|||++|
T Consensus       121 ~--~~~~p~ilv~nK~Dl~~~~~~~~--------~~-----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g  179 (201)
T 2q3h_A          121 H--CPKAPIILVGTQSDLREDVKVLI--------EL-----------DKCKEKPVPEEAAKLLAEEIKAASYIECSALTQ  179 (201)
T ss_dssp             H--CSSSCEEEEEECGGGGGCHHHHH--------HH-----------HTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             h--CCCCCEEEEEECHhhhhchhhhh--------hh-----------cccccccCCHHHHHHHHHhcCCcEEEEEecCCC
Confidence            5  35899999999999976411000        00           001126678888888887554458999999999


Q ss_pred             ccHHHHHHHHHHHHHHh
Q psy1524         297 TNITQVFKELLVQAKVK  313 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~~~  313 (592)
                      .||+++|+.+++.+...
T Consensus       180 ~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          180 KNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             TTHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcc
Confidence            99999999999988644

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.95  E-value=4.8e-27  Score=217.12  Aligned_cols=163  Identities=31%  Similarity=0.503  Sum_probs=143.3

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      +..+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.||||+|+                  
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------   64 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ------------------   64 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTG------------------
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCc------------------
Confidence            4679999999999999999999999999888888887 677788888998999999999998                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           +++..+...++..+|++|+|||++++.+++.+..|+..+....
T Consensus        65 -------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~  107 (168)
T 1z2a_A           65 -------------------------------------EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV  107 (168)
T ss_dssp             -------------------------------------GGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred             -------------------------------------HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC
Confidence                                                 6666677788999999999999999999999999999887764


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                        .+.|+++|+||+|+.+.                               +.++.+++..+++ ..+.+++++||++|.|
T Consensus       108 --~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~  153 (168)
T 1z2a_A          108 --GDIPTALVQNKIDLLDD-------------------------------SCIKNEEAEGLAK-RLKLRFYRTSVKEDLN  153 (168)
T ss_dssp             --CSCCEEEEEECGGGGGG-------------------------------CSSCHHHHHHHHH-HHTCEEEECBTTTTBS
T ss_pred             --CCCCEEEEEECcccCcc-------------------------------cccCHHHHHHHHH-HcCCeEEEEecCCCCC
Confidence              67899999999999865                               5667778888776 4567899999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQAK  311 (592)
Q Consensus       299 VeeLf~~Li~~i~  311 (592)
                      |+++|+.+++.+.
T Consensus       154 i~~l~~~l~~~~~  166 (168)
T 1z2a_A          154 VSEVFKYLAEKHL  166 (168)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998874

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.95  E-value=3.3e-27  Score=224.12  Aligned_cols=178  Identities=22%  Similarity=0.423  Sum_probs=145.9

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ....+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.||||+|+                  
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------   65 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS------------------   65 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCS------------------
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCC------------------
Confidence            35679999999999999999999999999888899998777777888999999999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH-HHHHHHHHHh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIFET  217 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L~~~  217 (592)
                                                           +.|..++..++..+|++|+|||++++.+|+.+ ..|+..+...
T Consensus        66 -------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~  108 (184)
T 1m7b_A           66 -------------------------------------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF  108 (184)
T ss_dssp             -------------------------------------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH
T ss_pred             -------------------------------------hhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence                                                 66777777789999999999999999999999 6788888764


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC-CC
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK-DN  296 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk-tg  296 (592)
                        ..++|+|+|+||+|+..+....                   ..-.....+.++.+++..+++.....+|++|||+ +|
T Consensus       109 --~~~~piilv~nK~Dl~~~~~~~-------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  167 (184)
T 1m7b_A          109 --CPNTKMLLVGCKSDLRTDVSTL-------------------VELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSE  167 (184)
T ss_dssp             --CTTCEEEEEEECGGGGGCHHHH-------------------HHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBH
T ss_pred             --CCCCCEEEEEEcchhhcchhhH-------------------hhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCC
Confidence              3589999999999997531000                   0000112267888999999875555789999999 68


Q ss_pred             ccHHHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQAKV  312 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~~  312 (592)
                      .||+++|+.+++.+..
T Consensus       168 ~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          168 NSVRDIFHVATLACVN  183 (184)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHhc
Confidence            9999999999998853

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.95  E-value=4.5e-27  Score=219.92  Aligned_cols=167  Identities=28%  Similarity=0.418  Sum_probs=141.8

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ..+..+||+|+|++|||||||+++|+++.+...+.++++ +.....+.+++..+.+.||||+|+                
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------------   68 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ----------------   68 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTG----------------
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCc----------------
Confidence            346789999999999999999999999988877777776 677788888999999999999998                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             +.+..+...++..+|++|+|||++++.+++.+..|+..+..
T Consensus        69 ---------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  109 (181)
T 3tw8_B           69 ---------------------------------------ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ  109 (181)
T ss_dssp             ---------------------------------------GGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence                                                   55556666778999999999999999999999999998877


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      .  ..++|+|+|+||+|+...                               +.+..+++..++. ..++++++|||++|
T Consensus       110 ~--~~~~p~ilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~  155 (181)
T 3tw8_B          110 N--CDDVCRILVGNKNDDPER-------------------------------KVVETEDAYKFAG-QMGIQLFETSAKEN  155 (181)
T ss_dssp             H--CTTSEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTCCEEECBTTTT
T ss_pred             h--CCCCCEEEEEECCCCchh-------------------------------cccCHHHHHHHHH-HcCCeEEEEECCCC
Confidence            4  468999999999998866                               5677778888776 44678999999999


Q ss_pred             ccHHHHHHHHHHHHHHh
Q psy1524         297 TNITQVFKELLVQAKVK  313 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~~~  313 (592)
                      .||+++|+.+++.+...
T Consensus       156 ~gi~~l~~~l~~~~~~~  172 (181)
T 3tw8_B          156 VNVEEMFNCITELVLRA  172 (181)
T ss_dssp             BSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999998654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.95  E-value=3.1e-27  Score=221.15  Aligned_cols=166  Identities=25%  Similarity=0.335  Sum_probs=142.1

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCC-eEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNG-VHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg-~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .+.+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++ ..+.++||||+|+                 
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~-----------------   66 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ-----------------   66 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTC-----------------
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCC-----------------
Confidence            4679999999999999999999999988877778886 77788888876 6789999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            +++..++..+++++|++|+|||++++.+|+.+..|+..+...
T Consensus        67 --------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~  108 (178)
T 2hxs_A           67 --------------------------------------TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKV  108 (178)
T ss_dssp             --------------------------------------CTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             --------------------------------------ccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence                                                  677778888999999999999999999999999999888764


Q ss_pred             hc-CCCCC-EEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524         218 KA-STAVP-IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD  295 (592)
Q Consensus       218 ~~-~~~~P-IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt  295 (592)
                      .. ....| +++|+||+|+.+.                               +.++.+++..+++ ..++++++|||++
T Consensus       109 ~~~~~~~~~iilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~  156 (178)
T 2hxs_A          109 SEESETQPLVALVGNKIDLEHM-------------------------------RTIKPEKHLRFCQ-ENGFSSHFVSAKT  156 (178)
T ss_dssp             HHHHTCCCEEEEEEECGGGGGG-------------------------------CSSCHHHHHHHHH-HHTCEEEEECTTT
T ss_pred             hcccCCCCeEEEEEEccccccc-------------------------------cccCHHHHHHHHH-HcCCcEEEEeCCC
Confidence            21 12445 8999999999765                               5677788888876 4467899999999


Q ss_pred             CccHHHHHHHHHHHHHH
Q psy1524         296 NTNITQVFKELLVQAKV  312 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~~  312 (592)
                      |.||+++|+.+++.+..
T Consensus       157 ~~gi~~l~~~l~~~~~~  173 (178)
T 2hxs_A          157 GDSVFLCFQKVAAEILG  173 (178)
T ss_dssp             CTTHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999998843

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.95  E-value=3.7e-27  Score=227.59  Aligned_cols=171  Identities=27%  Similarity=0.380  Sum_probs=137.3

Q ss_pred             CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524          56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG  134 (592)
Q Consensus        56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~  134 (592)
                      .+..+..+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.+.||||+|+              
T Consensus        19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--------------   84 (200)
T 2o52_A           19 SIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ--------------   84 (200)
T ss_dssp             ---CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTH--------------
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCc--------------
Confidence            34456789999999999999999999999998887888877 677778888998899999999998              


Q ss_pred             CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524         135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI  214 (592)
Q Consensus       135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L  214 (592)
                                                               +++..+...+++.+|++|+|||++++.+|+.+..|+..+
T Consensus        85 -----------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~  123 (200)
T 2o52_A           85 -----------------------------------------ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDA  123 (200)
T ss_dssp             -----------------------------------------HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             -----------------------------------------HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence                                                     666667778899999999999999999999999999988


Q ss_pred             HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524         215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK  294 (592)
Q Consensus       215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk  294 (592)
                      ... ...++|+++|+||+|+...                               +.++.+++..+++ ..++.+++|||+
T Consensus       124 ~~~-~~~~~piilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~SA~  170 (200)
T 2o52_A          124 RTL-ASPNIVVILCGNKKDLDPE-------------------------------REVTFLEASRFAQ-ENELMFLETSAL  170 (200)
T ss_dssp             HHH-TCTTCEEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEEECTT
T ss_pred             HHh-cCCCCcEEEEEECCCcccc-------------------------------cccCHHHHHHHHH-HcCCEEEEEeCC
Confidence            775 3468999999999999765                               5677788888876 456789999999


Q ss_pred             CCccHHHHHHHHHHHHHHhc
Q psy1524         295 DNTNITQVFKELLVQAKVKY  314 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i~~~~  314 (592)
                      +|.||+++|+.+++.+..+.
T Consensus       171 ~g~gi~~l~~~l~~~i~~~~  190 (200)
T 2o52_A          171 TGENVEEAFLKCARTILNKI  190 (200)
T ss_dssp             TCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999987654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.95  E-value=1.4e-26  Score=223.52  Aligned_cols=170  Identities=29%  Similarity=0.481  Sum_probs=147.5

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .+..+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.+.||||+|+                 
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----------------   67 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ-----------------   67 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTT-----------------
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCCh-----------------
Confidence            46779999999999999999999999999888888887 666777888999999999999998                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            ++|..+...++..+|++|+|||++++.+|+.+..|+..+...
T Consensus        68 --------------------------------------~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~  109 (206)
T 2bcg_Y           68 --------------------------------------ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY  109 (206)
T ss_dssp             --------------------------------------TTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------HHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence                                                  556666667789999999999999999999999999988776


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                       ...++|++||+||+|+...                               +.+..+++..++. ..+.++++|||++|.
T Consensus       110 -~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~  156 (206)
T 2bcg_Y          110 -ATSTVLKLLVGNKCDLKDK-------------------------------RVVEYDVAKEFAD-ANKMPFLETSALDST  156 (206)
T ss_dssp             -SCTTCEEEEEEECTTCTTT-------------------------------CCSCHHHHHHHHH-HTTCCEEECCTTTCT
T ss_pred             -cCCCCCEEEEEECCCCccc-------------------------------cccCHHHHHHHHH-HcCCeEEEEeCCCCC
Confidence             3567999999999999765                               5677788888876 456789999999999


Q ss_pred             cHHHHHHHHHHHHHHhccc
Q psy1524         298 NITQVFKELLVQAKVKYNL  316 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~~~~  316 (592)
                      ||+++|+.+++.+......
T Consensus       157 gi~~l~~~l~~~i~~~~~~  175 (206)
T 2bcg_Y          157 NVEDAFLTMARQIKESMSQ  175 (206)
T ss_dssp             THHHHHHHHHHHHHHHCCH
T ss_pred             CHHHHHHHHHHHHHHHHhh
Confidence            9999999999999776543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.95  E-value=6.8e-27  Score=216.54  Aligned_cols=164  Identities=30%  Similarity=0.520  Sum_probs=135.9

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ..+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.||||+|+                   
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~-------------------   62 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ-------------------   62 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTG-------------------
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCC-------------------
Confidence            468999999999999999999999998877888877 666777888888899999999998                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +++..+...++..+|++|+|||++++.+++.+..|+..+... .
T Consensus        63 ------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~  105 (170)
T 1g16_A           63 ------------------------------------ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH-A  105 (170)
T ss_dssp             ------------------------------------GGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHH-S
T ss_pred             ------------------------------------hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-c
Confidence                                                566666777899999999999999999999999999988776 3


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..++|+++|+||+|+. .                               +.+..+++..+++ ..+.++++|||++|.||
T Consensus       106 ~~~~piilv~nK~Dl~-~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gv  152 (170)
T 1g16_A          106 NDEAQLLLVGNKSDME-T-------------------------------RVVTADQGEALAK-ELGIPFIESSAKNDDNV  152 (170)
T ss_dssp             CTTCEEEEEEECTTCT-T-------------------------------CCSCHHHHHHHHH-HHTCCEEECBTTTTBSH
T ss_pred             CCCCcEEEEEECccCC-c-------------------------------CccCHHHHHHHHH-HcCCeEEEEECCCCCCH
Confidence            4688999999999993 2                               4566777787776 34578999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy1524         300 TQVFKELLVQAKVK  313 (592)
Q Consensus       300 eeLf~~Li~~i~~~  313 (592)
                      +++|+.+++.+.++
T Consensus       153 ~~l~~~l~~~~~~~  166 (170)
T 1g16_A          153 NEIFFTLAKLIQEK  166 (170)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=8.9e-27  Score=215.38  Aligned_cols=165  Identities=31%  Similarity=0.458  Sum_probs=142.7

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      +.+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.||||+|+                   
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~-------------------   62 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ-------------------   62 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS-------------------
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCC-------------------
Confidence            468999999999999999999999998888888887 566677888999999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +++..+...++..+|++|+|||++++.+++.+..|+..+... .
T Consensus        63 ------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~  105 (170)
T 1ek0_A           63 ------------------------------------ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ-A  105 (170)
T ss_dssp             ------------------------------------GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-S
T ss_pred             ------------------------------------hhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHh-c
Confidence                                                778888888999999999999999999999999999988776 3


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..++|+++|+||+|+....                            ..+.+..+++..+++ ..+.++++|||++|.||
T Consensus       106 ~~~~piilv~nK~Dl~~~~----------------------------~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~gi  156 (170)
T 1ek0_A          106 SKDIIIALVGNKIDXLQEG----------------------------GERKVAREEGEKLAE-EKGLLFFETSAKTGENV  156 (170)
T ss_dssp             CTTCEEEEEEECGGGGGSS----------------------------CCCCSCHHHHHHHHH-HHTCEEEECCTTTCTTH
T ss_pred             CCCCcEEEEEECCCccccc----------------------------cccCCCHHHHHHHHH-HcCCEEEEEeCCCCCCH
Confidence            5689999999999997641                            115677778887776 45678999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         300 TQVFKELLVQA  310 (592)
Q Consensus       300 eeLf~~Li~~i  310 (592)
                      +++|+.+++.+
T Consensus       157 ~~l~~~l~~~i  167 (170)
T 1ek0_A          157 NDVFLGIGEKI  167 (170)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.95  E-value=7.8e-27  Score=224.59  Aligned_cols=171  Identities=30%  Similarity=0.445  Sum_probs=135.6

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ....+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.++||||+|+                 
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~-----------------   87 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ-----------------   87 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTC-----------------
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCC-----------------
Confidence            35679999999999999999999999998877888877 666778888999999999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            +++..+...++..+|++|+|||++++.+|+.+..|+..+...
T Consensus        88 --------------------------------------~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~  129 (199)
T 2p5s_A           88 --------------------------------------ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA  129 (199)
T ss_dssp             --------------------------------------TTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             --------------------------------------cchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHh
Confidence                                                  778888889999999999999999999999999999888765


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                       ...++|+|||+||+|+.+....                         ...+.+..+++..+++ ..++++++|||++|.
T Consensus       130 -~~~~~piilv~NK~Dl~~~~~~-------------------------~~~~~v~~~~~~~~~~-~~~~~~~~~SA~~g~  182 (199)
T 2p5s_A          130 -AHETVPIMLVGNKADIRDTAAT-------------------------EGQKCVPGHFGEKLAM-TYGALFCETSAKDGS  182 (199)
T ss_dssp             -C---CCEEEEEECGGGHHHHHH-------------------------TTCCCCCHHHHHHHHH-HHTCEEEECCTTTCT
T ss_pred             -cCCCCCEEEEEECccccccccc-------------------------ccccccCHHHHHHHHH-HcCCeEEEeeCCCCC
Confidence             3457899999999999743100                         0126677888888877 446789999999999


Q ss_pred             cHHHHHHHHHHHHH
Q psy1524         298 NITQVFKELLVQAK  311 (592)
Q Consensus       298 gVeeLf~~Li~~i~  311 (592)
                      ||+++|+.+++.+.
T Consensus       183 gv~el~~~l~~~i~  196 (199)
T 2p5s_A          183 NIVEAVLHLAREVK  196 (199)
T ss_dssp             THHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999999873

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=8.8e-27  Score=222.97  Aligned_cols=165  Identities=27%  Similarity=0.405  Sum_probs=143.9

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ..++.+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.||||+|+                
T Consensus        19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------------   82 (192)
T 2fg5_A           19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQ----------------   82 (192)
T ss_dssp             --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCS----------------
T ss_pred             ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCc----------------
Confidence            346789999999999999999999999998878888887 455666778888899999999999                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             +++..+...++..+|++|+|||++++.+|+.+..|+..+..
T Consensus        83 ---------------------------------------~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~  123 (192)
T 2fg5_A           83 ---------------------------------------ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKE  123 (192)
T ss_dssp             ---------------------------------------GGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------hhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence                                                   77788888899999999999999999999999999998877


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      . ...++|+++|+||+|+.+.                               +.++.+++..+++ ..+.++++|||++|
T Consensus       124 ~-~~~~~piiiv~NK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~~~  170 (192)
T 2fg5_A          124 H-GPENIVMAIAGNKCDLSDI-------------------------------REVPLKDAKEYAE-SIGAIVVETSAKNA  170 (192)
T ss_dssp             H-SCTTCEEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-TTTCEEEECBTTTT
T ss_pred             h-CCCCCcEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCCEEEEEeCCCC
Confidence            6 3567999999999999765                               5677788888887 45678999999999


Q ss_pred             ccHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQA  310 (592)
Q Consensus       297 ~gVeeLf~~Li~~i  310 (592)
                      .||+++|+.|++.+
T Consensus       171 ~gi~~l~~~l~~~i  184 (192)
T 2fg5_A          171 INIEELFQGISRQI  184 (192)
T ss_dssp             BSHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHHH
Confidence            99999999998876

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.2e-26  Score=220.38  Aligned_cols=168  Identities=27%  Similarity=0.386  Sum_probs=145.5

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ....+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.+.||||+|+                 
T Consensus        12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-----------------   74 (195)
T 1x3s_A           12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ-----------------   74 (195)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSS-----------------
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCc-----------------
Confidence            35679999999999999999999999999888888876 666777888999999999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            +.+..+...+++.+|++|+|||++++.++..+..|+..+...
T Consensus        75 --------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~  116 (195)
T 1x3s_A           75 --------------------------------------ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY  116 (195)
T ss_dssp             --------------------------------------GGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTC
T ss_pred             --------------------------------------hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence                                                  677778888999999999999999999999999999988765


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                      ....++|+++|+||+|+..                                +.+..+++..+++ .....+++|||++|.
T Consensus       117 ~~~~~~p~ilv~nK~Dl~~--------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  163 (195)
T 1x3s_A          117 CTRNDIVNMLVGNKIDKEN--------------------------------REVDRNEGLKFAR-KHSMLFIEASAKTCD  163 (195)
T ss_dssp             CSCSCCEEEEEEECTTSSS--------------------------------CCSCHHHHHHHHH-HTTCEEEECCTTTCT
T ss_pred             cCcCCCcEEEEEECCcCcc--------------------------------cccCHHHHHHHHH-HcCCEEEEecCCCCC
Confidence            4446899999999999943                                3566777788776 456789999999999


Q ss_pred             cHHHHHHHHHHHHHHhc
Q psy1524         298 NITQVFKELLVQAKVKY  314 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~~  314 (592)
                      ||+++|+.|++.+....
T Consensus       164 gi~~l~~~l~~~~~~~~  180 (195)
T 1x3s_A          164 GVQCAFEELVEKIIQTP  180 (195)
T ss_dssp             THHHHHHHHHHHHHTSG
T ss_pred             CHHHHHHHHHHHHHhhh
Confidence            99999999999986543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.95  E-value=1.1e-26  Score=217.44  Aligned_cols=170  Identities=25%  Similarity=0.471  Sum_probs=134.6

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ....+||+|+|++|||||||+++|+++.+...+.+|++ +.....+.++ +..+.+.||||+|+                
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------------   68 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ----------------   68 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------------
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCC----------------
Confidence            35679999999999999999999999998888888886 7777777777 66788999999998                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             +.+..+...++..+|++|+|||++++.+|+.+..|+..+..
T Consensus        69 ---------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  109 (182)
T 1ky3_A           69 ---------------------------------------ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLV  109 (182)
T ss_dssp             -----------------------------------------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             ---------------------------------------hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHH
Confidence                                                   66777777789999999999999999999999999998877


Q ss_pred             hhc---CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEccc
Q psy1524         217 TKA---STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASA  293 (592)
Q Consensus       217 ~~~---~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSA  293 (592)
                      ...   ..++|+++|+||+|+....                              +.++.+++..+++.....++++|||
T Consensus       110 ~~~~~~~~~~p~ilv~nK~Dl~~~~------------------------------~~v~~~~~~~~~~~~~~~~~~~~Sa  159 (182)
T 1ky3_A          110 HANVNSPETFPFVILGNKIDAEESK------------------------------KIVSEKSAQELAKSLGDIPLFLTSA  159 (182)
T ss_dssp             HHCCSCTTTCCEEEEEECTTSCGGG------------------------------CCSCHHHHHHHHHHTTSCCEEEEBT
T ss_pred             HhcccCcCCCcEEEEEECCcccccc------------------------------ccCCHHHHHHHHHhcCCCeEEEEec
Confidence            532   2678999999999996541                              4567788888887566788999999


Q ss_pred             CCCccHHHHHHHHHHHHHHh
Q psy1524         294 KDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       294 ktg~gVeeLf~~Li~~i~~~  313 (592)
                      ++|.||+++|+.+++.+..+
T Consensus       160 ~~~~gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          160 KNAINVDTAFEEIARSALQQ  179 (182)
T ss_dssp             TTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999988654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.95  E-value=3.3e-27  Score=228.80  Aligned_cols=175  Identities=23%  Similarity=0.394  Sum_probs=145.2

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||+++|+++.+...+.+|+++.+...+.+++..+.++||||+|+                   
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~-------------------   67 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQ-------------------   67 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCC-------------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCc-------------------
Confidence            4679999999999999999999999999988999999877778888999999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhh
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETK  218 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~  218 (592)
                                                          ++|..++..++.++|++|+|||++++.+|+.+. .|+..+... 
T Consensus        68 ------------------------------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-  110 (212)
T 2j0v_A           68 ------------------------------------EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF-  110 (212)
T ss_dssp             ------------------------------------CCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-
T ss_pred             ------------------------------------HHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-
Confidence                                                667777777899999999999999999999997 788888765 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                       ..++|+|||+||+|+.+.....                       ....+.++.+++..+++.....+|++|||++|.|
T Consensus       111 -~~~~piilv~nK~Dl~~~~~~~-----------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~g  166 (212)
T 2j0v_A          111 -APNVPIVLVGTKLDLRDDKGYL-----------------------ADHTNVITSTQGEELRKQIGAAAYIECSSKTQQN  166 (212)
T ss_dssp             -CTTCCEEEEEECHHHHTCHHHH-----------------------HTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTT
T ss_pred             -CCCCCEEEEEeCHHhhhCcccc-----------------------ccccCCCCHHHHHHHHHHcCCceEEEccCCCCCC
Confidence             3589999999999997642100                       0011356788888888754445899999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q psy1524         299 ITQVFKELLVQAKVKY  314 (592)
Q Consensus       299 VeeLf~~Li~~i~~~~  314 (592)
                      |+++|+.+++.+....
T Consensus       167 i~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          167 VKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             HHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            9999999999986543

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.94  E-value=4.7e-27  Score=228.58  Aligned_cols=172  Identities=23%  Similarity=0.414  Sum_probs=145.2

Q ss_pred             CCCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCe----------EEEEEEEeCCCCCCC
Q psy1524          55 SSEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGV----------HLKLDILDTSGEQSG  123 (592)
Q Consensus        55 ~~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~----------~v~L~I~DT~G~~~~  123 (592)
                      .....++.+||+|+|++|||||||+++|+++.+...+.+|+. ++....+.+++.          .+.++||||+|+   
T Consensus        18 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~---   94 (217)
T 2f7s_A           18 GSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ---   94 (217)
T ss_dssp             ---CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH---
T ss_pred             cCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc---
Confidence            344557889999999999999999999999999877778877 555667777766          788999999999   


Q ss_pred             CcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCC
Q psy1524         124 KGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNS  203 (592)
Q Consensus       124 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~S  203 (592)
                                                                          ++|..++..++..+|++|+|||++++.+
T Consensus        95 ----------------------------------------------------~~~~~~~~~~~~~~d~iilV~D~~~~~s  122 (217)
T 2f7s_A           95 ----------------------------------------------------ERFRSLTTAFFRDAMGFLLMFDLTSQQS  122 (217)
T ss_dssp             ----------------------------------------------------HHHHHHHHHHHTTCCEEEEEEETTCHHH
T ss_pred             ----------------------------------------------------HhHHhHHHHHhcCCCEEEEEEECcCHHH
Confidence                                                                7888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc
Q psy1524         204 FEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD  283 (592)
Q Consensus       204 fe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~  283 (592)
                      |+.+..|+..+.......++|+|||+||+|+.+.                               +.++.+++..+++ .
T Consensus       123 ~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~-------------------------------~~v~~~~~~~~~~-~  170 (217)
T 2f7s_A          123 FLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ-------------------------------REVNERQARELAD-K  170 (217)
T ss_dssp             HHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHhcCcCCCCEEEEEECCccccc-------------------------------cccCHHHHHHHHH-H
Confidence            9999988887765433368999999999999765                               5677788888876 4


Q ss_pred             CCCeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524         284 WENGFVEASAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       284 ~~~~~~EvSAktg~gVeeLf~~Li~~i~~~  313 (592)
                      .++++++|||++|.||+++|+.|++.+...
T Consensus       171 ~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~  200 (217)
T 2f7s_A          171 YGIPYFETSAATGQNVEKAVETLLDLIMKR  200 (217)
T ss_dssp             TTCCEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            567899999999999999999999998654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.94  E-value=8.2e-27  Score=217.80  Aligned_cols=163  Identities=29%  Similarity=0.518  Sum_probs=143.3

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ...+||+|+|++|||||||+++|+++.+...+.+|+. +.....+.+++..+.+.||||+|+                  
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~------------------   73 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ------------------   73 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCS------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCc------------------
Confidence            4669999999999999999999999999888888877 777888889999899999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           +++..+...++..+|++|+|||++++.+|+.+..|+..+... 
T Consensus        74 -------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-  115 (179)
T 2y8e_A           74 -------------------------------------ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTE-  115 (179)
T ss_dssp             -------------------------------------GGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-
T ss_pred             -------------------------------------HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-
Confidence                                                 677778888899999999999999999999999999988775 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      ...++|+++|+||+|+.+.                               +.++.+++..+++ ..+.++++|||++|.|
T Consensus       116 ~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~  163 (179)
T 2y8e_A          116 RGSDVIIMLVGNKTDLSDK-------------------------------RQVSTEEGERKAK-ELNVMFIETSAKAGYN  163 (179)
T ss_dssp             HTTSSEEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEEEBTTTTBS
T ss_pred             cCCCCcEEEEEECCccccc-------------------------------CcCCHHHHHHHHH-HcCCeEEEEeCCCCCC
Confidence            3467999999999999765                               5677777777776 4467899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQA  310 (592)
Q Consensus       299 VeeLf~~Li~~i  310 (592)
                      |+++|+.+++.+
T Consensus       164 i~~l~~~l~~~~  175 (179)
T 2y8e_A          164 VKQLFRRVAAAL  175 (179)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHH
Confidence            999999998765

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.94  E-value=7e-27  Score=227.66  Aligned_cols=178  Identities=22%  Similarity=0.417  Sum_probs=145.9

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ....+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.++||||+|+                  
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------   86 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS------------------   86 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCS------------------
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCc------------------
Confidence            45679999999999999999999999999988899998777777888998999999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH-HHHHHHHHHh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIFET  217 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L~~~  217 (592)
                                                           +.|..++..++..+|++|+|||++++.+|+.+ ..|+..+...
T Consensus        87 -------------------------------------~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~  129 (205)
T 1gwn_A           87 -------------------------------------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF  129 (205)
T ss_dssp             -------------------------------------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH
T ss_pred             -------------------------------------HhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence                                                 66777777789999999999999999999999 6788888764


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC-CC
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK-DN  296 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk-tg  296 (592)
                        ..++|+|||+||+|+..+.....                   .-.....+.++.+++..+++......|++|||+ +|
T Consensus       130 --~~~~piilv~nK~Dl~~~~~~~~-------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  188 (205)
T 1gwn_A          130 --CPNTKMLLVGCKSDLRTDVSTLV-------------------ELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSE  188 (205)
T ss_dssp             --CTTCEEEEEEECGGGGGCHHHHH-------------------HHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCH
T ss_pred             --CCCCCEEEEEechhhccchhhhh-------------------hhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCC
Confidence              35899999999999975311000                   000112267888899999875555789999999 68


Q ss_pred             ccHHHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQAKV  312 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~~  312 (592)
                      .||+++|+.+++.+..
T Consensus       189 ~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          189 NSVRDIFHVATLACVN  204 (205)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhh
Confidence            9999999999998854

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=2e-26  Score=213.42  Aligned_cols=163  Identities=39%  Similarity=0.624  Sum_probs=141.1

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ..+||+|+|++|||||||+++|+++.+...+.+|+...+...+..++..+.+.||||+|+                    
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~--------------------   61 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS--------------------   61 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSC--------------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCc--------------------
Confidence            358999999999999999999999998888888888777777788888899999999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc-
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA-  219 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~-  219 (592)
                                                         +++..+...++..+|++|+|||++++.+++.+..|+..+.+... 
T Consensus        62 -----------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  106 (172)
T 2erx_A           62 -----------------------------------HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGD  106 (172)
T ss_dssp             -----------------------------------SSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC-
T ss_pred             -----------------------------------hhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC
Confidence                                               77788888899999999999999999999999999888877532 


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..++|+++|+||+|+...                               +.+..+++..++. ..+.++++|||++|.||
T Consensus       107 ~~~~pii~v~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~gi  154 (172)
T 2erx_A          107 VESIPIMLVGNKCDESPS-------------------------------REVQSSEAEALAR-TWKCAFMETSAKLNHNV  154 (172)
T ss_dssp             --CCCEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEECBTTTTBSH
T ss_pred             CCCCCEEEEEEccccccc-------------------------------cccCHHHHHHHHH-HhCCeEEEecCCCCcCH
Confidence            257899999999999765                               5566677777766 44678999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         300 TQVFKELLVQA  310 (592)
Q Consensus       300 eeLf~~Li~~i  310 (592)
                      +++|+.+++.+
T Consensus       155 ~~l~~~l~~~~  165 (172)
T 2erx_A          155 KELFQELLNLE  165 (172)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHH
Confidence            99999998865

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.94  E-value=5.2e-26  Score=208.64  Aligned_cols=163  Identities=34%  Similarity=0.567  Sum_probs=143.0

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ..+||+++|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.+|||+|+                    
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--------------------   61 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQ--------------------   61 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCC--------------------
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCc--------------------
Confidence            358999999999999999999999999888888888877888888999999999999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         +++..+...++..+|++++|||+++..+++.+..|+..+......
T Consensus        62 -----------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  106 (166)
T 2ce2_X           62 -----------------------------------EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS  106 (166)
T ss_dssp             -----------------------------------SSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             -----------------------------------hhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence                                               677788888999999999999999999999999999998877555


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      .++|+++|+||+|+...                                .+..+++..+++ ..+.+++++||++|.|++
T Consensus       107 ~~~p~iiv~nK~Dl~~~--------------------------------~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~  153 (166)
T 2ce2_X          107 DDVPMVLVGNKSDLAAR--------------------------------TVESRQAQDLAR-SYGIPYIETSAKTRQGVE  153 (166)
T ss_dssp             SCCCEEEEEECTTCSCC--------------------------------CSCHHHHHHHHH-HHTCCEEEECTTTCTTHH
T ss_pred             CCCcEEEEEEchhhhhc--------------------------------ccCHHHHHHHHH-HcCCeEEEecCCCCCCHH
Confidence            68999999999998752                                345667777766 446789999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         301 QVFKELLVQAK  311 (592)
Q Consensus       301 eLf~~Li~~i~  311 (592)
                      ++|+.+++.+.
T Consensus       154 ~l~~~l~~~~~  164 (166)
T 2ce2_X          154 DAFYTLVREIR  164 (166)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999874

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1e-26  Score=228.26  Aligned_cols=169  Identities=30%  Similarity=0.458  Sum_probs=138.4

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .+..+||+|+|++|||||||+++|+++.+...+.+|++ ++....+.+++..+.+.||||+|+                 
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-----------------   72 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ-----------------   72 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTT-----------------
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCc-----------------
Confidence            46789999999999999999999999999887888877 666777888998899999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            ++|..++..+++.+|++|+|||++++.+|+.+..|+..+...
T Consensus        73 --------------------------------------~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~  114 (223)
T 3cpj_B           73 --------------------------------------ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELREN  114 (223)
T ss_dssp             --------------------------------------TTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------cchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence                                                  566666677899999999999999999999999999988775


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                       ...++|+|||+||+|+...                               +.++.+++..+++ ..+..|++|||++|.
T Consensus       115 -~~~~~piilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~  161 (223)
T 3cpj_B          115 -ADDNVAVGLIGNKSDLAHL-------------------------------RAVPTEESKTFAQ-ENQLLFTETSALNSE  161 (223)
T ss_dssp             -CC--CEEEEEECCGGGGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECCCC-CC
T ss_pred             -CCCCCeEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCCEEEEEeCCCCC
Confidence             3467899999999999765                               5677788888876 456789999999999


Q ss_pred             cHHHHHHHHHHHHHHhcc
Q psy1524         298 NITQVFKELLVQAKVKYN  315 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~~~  315 (592)
                      ||+++|+.|++.+.....
T Consensus       162 gi~~l~~~l~~~i~~~~~  179 (223)
T 3cpj_B          162 NVDKAFEELINTIYQKVS  179 (223)
T ss_dssp             CHHHHHHHHHHHHTTCC-
T ss_pred             CHHHHHHHHHHHHHHHhh
Confidence            999999999999865443

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.94  E-value=2e-26  Score=216.77  Aligned_cols=176  Identities=23%  Similarity=0.412  Sum_probs=145.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      +..+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.++||||+|+                   
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~-------------------   63 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ-------------------   63 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCS-------------------
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCC-------------------
Confidence            4679999999999999999999999999988899998877888889999999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhh
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETK  218 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~  218 (592)
                                                          ++|..+...++..+|++|+|||++++.+|+.+. .|+..+... 
T Consensus        64 ------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-  106 (186)
T 1mh1_A           64 ------------------------------------EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-  106 (186)
T ss_dssp             ------------------------------------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-
T ss_pred             ------------------------------------HhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHh-
Confidence                                                666777777899999999999999999999997 688877764 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                       ..++|+++|+||+|+.+.....+        .+.           ....+.++.+++..+++.....++++|||++|.|
T Consensus       107 -~~~~piilv~nK~Dl~~~~~~~~--------~~~-----------~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~g  166 (186)
T 1mh1_A          107 -CPNTPIILVGTKLDLRDDKDTIE--------KLK-----------EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG  166 (186)
T ss_dssp             -STTSCEEEEEECHHHHTCHHHHH--------HHH-----------HTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT
T ss_pred             -CCCCCEEEEeEcccccccchhhh--------hhc-----------ccccccCCHHHHHHHHHhcCCcEEEEecCCCccC
Confidence             34899999999999975411000        000           0012577888888888754444899999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQAK  311 (592)
Q Consensus       299 VeeLf~~Li~~i~  311 (592)
                      |+++|+.+++.+.
T Consensus       167 i~~l~~~l~~~~~  179 (186)
T 1mh1_A          167 LKTVFDEAIRAVL  179 (186)
T ss_dssp             HHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999884

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.94  E-value=5.2e-26  Score=216.09  Aligned_cols=167  Identities=34%  Similarity=0.552  Sum_probs=136.8

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      .+..+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.||||+|+                  
T Consensus        18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------   79 (190)
T 3con_A           18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ------------------   79 (190)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-------------------
T ss_pred             ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCCh------------------
Confidence            35679999999999999999999999999888888888877788888999999999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           +++..+...++..+|++++|||+++..+++.+..|+..+....
T Consensus        80 -------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~  122 (190)
T 3con_A           80 -------------------------------------EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVK  122 (190)
T ss_dssp             -----------------------------------------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------HHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHh
Confidence                                                 6677777888999999999999999999999999999888765


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      ...++|+++|+||+|+...                                .+..+++..+++ ..++++++|||++|.|
T Consensus       123 ~~~~~p~ilv~nK~Dl~~~--------------------------------~~~~~~~~~~~~-~~~~~~~~~Sa~~~~g  169 (190)
T 3con_A          123 DSDDVPMVLVGNKCDLPTR--------------------------------TVDTKQAHELAK-SYGIPFIETSAKTRQG  169 (190)
T ss_dssp             TCSCCCEEEEEECTTCSCC--------------------------------CSCHHHHHHHHH-HHTCCEEECCTTTCTT
T ss_pred             CCCCCeEEEEEECCcCCcc--------------------------------cCCHHHHHHHHH-HcCCeEEEEeCCCCCC
Confidence            5568999999999998642                                355677777776 3456899999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy1524         299 ITQVFKELLVQAKVK  313 (592)
Q Consensus       299 VeeLf~~Li~~i~~~  313 (592)
                      |+++|+.|++.+...
T Consensus       170 i~~l~~~l~~~~~~~  184 (190)
T 3con_A          170 VEDAFYTLVREIRQY  184 (190)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988643

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.94  E-value=1.6e-26  Score=225.62  Aligned_cols=178  Identities=27%  Similarity=0.422  Sum_probs=128.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.++||||+|+                   
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~-------------------   92 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ-------------------   92 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCc-------------------
Confidence            4579999999999999999999999999888889998877888889999999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhh
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETK  218 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~  218 (592)
                                                          ++|..++..++.++|++|+|||++++.+|+.+. .|+..+... 
T Consensus        93 ------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-  135 (214)
T 2j1l_A           93 ------------------------------------DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF-  135 (214)
T ss_dssp             ------------------------------------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHH-
T ss_pred             ------------------------------------hhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh-
Confidence                                                777788888899999999999999999999997 688888764 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                       ..++|+|||+||+|+........        .+.           ....+.++.+++..+++......+++|||++|.|
T Consensus       136 -~~~~piilv~nK~Dl~~~~~~~~--------~~~-----------~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g  195 (214)
T 2j1l_A          136 -CKKVPIIVVGCKTDLRKDKSLVN--------KLR-----------RNGLEPVTYHRGQEMARSVGAVAYLECSARLHDN  195 (214)
T ss_dssp             -CSSCCEEEEEECGGGGSCHHHHH--------HHH-----------HTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBS
T ss_pred             -CCCCCEEEEEEChhhhccchhhh--------hhc-----------ccccCcccHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence             36799999999999976521000        000           0012578888889888754444899999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy1524         299 ITQVFKELLVQAKVK  313 (592)
Q Consensus       299 VeeLf~~Li~~i~~~  313 (592)
                      |+++|+.+++.+...
T Consensus       196 i~el~~~l~~~~~~~  210 (214)
T 2j1l_A          196 VHAVFQEAAEVALSS  210 (214)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998643

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.94  E-value=7.5e-26  Score=214.78  Aligned_cols=163  Identities=28%  Similarity=0.394  Sum_probs=139.7

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeE-----------------------------
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVH-----------------------------  109 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~-----------------------------  109 (592)
                      +..+||+|+|++|||||||+++|++..+...+.+|++ ++....+.+++..                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            5679999999999999999999999999888888887 6666777777655                             


Q ss_pred             --------EEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHH
Q psy1524         110 --------LKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAM  181 (592)
Q Consensus       110 --------v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  181 (592)
                              +.+.||||+|+                                                       +.+..+
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~-------------------------------------------------------~~~~~~  109 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQ-------------------------------------------------------ERYASI  109 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTG-------------------------------------------------------GGCTTT
T ss_pred             cccCccceeEEEEEECCCc-------------------------------------------------------HHHHHH
Confidence                    88899999998                                                       677778


Q ss_pred             HHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCcccc
Q psy1524         182 RALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCA  261 (592)
Q Consensus       182 ~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~  261 (592)
                      ...++..+|++|+|||++++.+++.+..|+..+....   ..|+|+|+||+| ...                        
T Consensus       110 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D-~~~------------------------  161 (208)
T 3clv_A          110 VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKID-KNK------------------------  161 (208)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTT-CC-------------------------
T ss_pred             HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCC-ccc------------------------
Confidence            8889999999999999999999999999999887752   399999999999 333                        


Q ss_pred             ccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524         262 HQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       262 ~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~  313 (592)
                             +.+..+++..+++ ..+.++++|||++|.||+++|+++++.+..+
T Consensus       162 -------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          162 -------FQVDILEVQKYAQ-DNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             -------CCSCHHHHHHHHH-HTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             -------ccCCHHHHHHHHH-HcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence                   5667788888877 4567899999999999999999999988654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.94  E-value=4e-26  Score=219.45  Aligned_cols=169  Identities=27%  Similarity=0.472  Sum_probs=143.5

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ....+||+|+|++|||||||+++|++..+...+.+|++ +.....+.+++..+.+.||||+|+                 
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----------------   67 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ-----------------   67 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSS-----------------
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCc-----------------
Confidence            35679999999999999999999999999888888886 777778888888899999999998                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            +.+..+...++..+|++|+|||++++.+|+.+..|+..+...
T Consensus        68 --------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  109 (207)
T 1vg8_A           68 --------------------------------------ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ  109 (207)
T ss_dssp             --------------------------------------GGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             --------------------------------------HHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence                                                  555555566789999999999999999999999999988765


Q ss_pred             hcC---CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524         218 KAS---TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK  294 (592)
Q Consensus       218 ~~~---~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk  294 (592)
                      ...   .++|+++|+||+|+..                                +.+..+++..++......++++|||+
T Consensus       110 ~~~~~~~~~piilv~nK~Dl~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~  157 (207)
T 1vg8_A          110 ASPRDPENFPFVVLGNKIDLEN--------------------------------RQVATKRAQAWCYSKNNIPYFETSAK  157 (207)
T ss_dssp             HCCSSGGGSCEEEEEECTTSSC--------------------------------CCSCHHHHHHHHHHTTSCCEEECBTT
T ss_pred             cccccCCCCcEEEEEECCCCcc--------------------------------cccCHHHHHHHHHhcCCceEEEEeCC
Confidence            321   4789999999999973                                45567778888765667789999999


Q ss_pred             CCccHHHHHHHHHHHHHHhc
Q psy1524         295 DNTNITQVFKELLVQAKVKY  314 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i~~~~  314 (592)
                      +|.||+++|+.|++.+....
T Consensus       158 ~g~gi~~l~~~l~~~~~~~~  177 (207)
T 1vg8_A          158 EAINVEQAFQTIARNALKQE  177 (207)
T ss_dssp             TTBSHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999987654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=4.6e-26  Score=217.35  Aligned_cols=165  Identities=38%  Similarity=0.600  Sum_probs=142.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||+++|+++.+...+.+|+...+...+.+++..+.+.||||+|+                   
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~-------------------   66 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGS-------------------   66 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGG-------------------
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCCh-------------------
Confidence            4569999999999999999999999999888888888777777788998999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +++..+...++..+|++|+|||++++.+|+.+..|+..+.+...
T Consensus        67 ------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~  110 (199)
T 2gf0_A           67 ------------------------------------HQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKG  110 (199)
T ss_dssp             ------------------------------------GSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHS
T ss_pred             ------------------------------------HHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhc
Confidence                                                77888888999999999999999999999999998888877532


Q ss_pred             -CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         220 -STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       220 -~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                       ..++|+|+|+||+|+..                                +.+..+++..++. .....+++|||++|.|
T Consensus       111 ~~~~~piilv~nK~Dl~~--------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~g  157 (199)
T 2gf0_A          111 SVEDIPVMLVGNKCDETQ--------------------------------REVDTREAQAVAQ-EWKCAFMETSAKMNYN  157 (199)
T ss_dssp             CGGGSCEEEEEECTTCSS--------------------------------CSSCHHHHHHHHH-HHTCEEEECBTTTTBS
T ss_pred             CCCCCCEEEEEECccCCc--------------------------------cccCHHHHHHHHH-HhCCeEEEEecCCCCC
Confidence             24789999999999864                                2455677777766 4567899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQAKV  312 (592)
Q Consensus       299 VeeLf~~Li~~i~~  312 (592)
                      |+++|+++++.+..
T Consensus       158 i~~l~~~l~~~~~~  171 (199)
T 2gf0_A          158 VKELFQELLTLETR  171 (199)
T ss_dssp             HHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999987743

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.94  E-value=1.2e-26  Score=225.00  Aligned_cols=175  Identities=23%  Similarity=0.415  Sum_probs=144.1

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||+++|+.+.+...+.+|+.+.+...+.+++..+.+.||||+|+                   
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~-------------------   88 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL-------------------   88 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCS-------------------
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCc-------------------
Confidence            5679999999999999999999999999989999999888888899999999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhh
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETK  218 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~  218 (592)
                                                          ++|..+...+++.+|++|+|||++++.+|+.+. .|+..+... 
T Consensus        89 ------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-  131 (204)
T 4gzl_A           89 ------------------------------------EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-  131 (204)
T ss_dssp             ------------------------------------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-
T ss_pred             ------------------------------------hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-
Confidence                                                677777778899999999999999999999997 688877765 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                       ..++|+|+|+||+|+.......+.                   ......+.++.+++..+++.....++++|||++|.|
T Consensus       132 -~~~~piilv~nK~Dl~~~~~~~~~-------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g  191 (204)
T 4gzl_A          132 -CPNTPIILVGTKLDLRDDKDTIEK-------------------LKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG  191 (204)
T ss_dssp             -CSSCCEEEEEECHHHHTCHHHHHH-------------------HHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT
T ss_pred             -CCCCCEEEEEechhhccchhhhhh-------------------hhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCC
Confidence             368999999999999765211000                   000112567888899998866666799999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQA  310 (592)
Q Consensus       299 VeeLf~~Li~~i  310 (592)
                      |+++|+.+++.+
T Consensus       192 i~~l~~~l~~~~  203 (204)
T 4gzl_A          192 LKTVFDEAIRAV  203 (204)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.94  E-value=3.6e-27  Score=221.51  Aligned_cols=173  Identities=25%  Similarity=0.403  Sum_probs=126.1

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||+++|+.+.+...+.+|+.+.+...+.+++..+.++||||+|+                   
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~-------------------   66 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ-------------------   66 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC--------------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCC-------------------
Confidence            4568999999999999999999999999888888888666555667888889999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhh
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETK  218 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~  218 (592)
                                                          ++|..++..+++++|++|+|||++++.+|+.+. .|+..+... 
T Consensus        67 ------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-  109 (182)
T 3bwd_D           67 ------------------------------------EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY-  109 (182)
T ss_dssp             ------------------------------------CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-
T ss_pred             ------------------------------------hhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-
Confidence                                                666777777899999999999999999999997 688888765 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                       ..++|+++|+||+|+.+......                     .....+.++.+++..+++.....+|++|||++|.|
T Consensus       110 -~~~~piilv~nK~Dl~~~~~~~~---------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  167 (182)
T 3bwd_D          110 -APGVPIVLVGTKLDLRDDKQFFI---------------------DHPGAVPITTVQGEELKKLIGAPAYIECSSKSQEN  167 (182)
T ss_dssp             -CTTCCEEEEEECHHHHTCHHHHH---------------------HC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTT
T ss_pred             -CCCCCEEEEEechhhhcCccccc---------------------ccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence             34899999999999976521000                     00112456788888888754445899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQA  310 (592)
Q Consensus       299 VeeLf~~Li~~i  310 (592)
                      |+++|+.+++.+
T Consensus       168 i~~l~~~l~~~i  179 (182)
T 3bwd_D          168 VKGVFDAAIRVV  179 (182)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999877

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.94  E-value=6.6e-26  Score=218.70  Aligned_cols=177  Identities=25%  Similarity=0.438  Sum_probs=144.4

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ....+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.||||+|+                  
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------   83 (201)
T 2gco_A           22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQ------------------   83 (201)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCS------------------
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCc------------------
Confidence            35679999999999999999999999999888889988666666788999999999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH-HHHHHHHHHh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIFET  217 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L~~~  217 (592)
                                                           ++|..++..+++++|++|+|||++++.+|+.+ ..|+..+...
T Consensus        84 -------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  126 (201)
T 2gco_A           84 -------------------------------------EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF  126 (201)
T ss_dssp             -------------------------------------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH
T ss_pred             -------------------------------------hhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence                                                 66777777789999999999999999999999 5677777664


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                        ..++|+++|+||+|+.......        ..+.           ....+.++.+++..+++......+++|||++|.
T Consensus       127 --~~~~piilv~nK~Dl~~~~~~~--------~~~~-----------~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~  185 (201)
T 2gco_A          127 --CPNVPIILVGNKKDLRQDEHTR--------RELA-----------KMKQEPVRSEEGRDMANRISAFGYLECSAKTKE  185 (201)
T ss_dssp             --STTCCEEEEEECGGGTTCHHHH--------HHHH-----------TTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCT
T ss_pred             --CCCCCEEEEEecHHhhcCccch--------hhhc-----------ccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCC
Confidence              3589999999999997642100        0000           011256788888888875544489999999999


Q ss_pred             cHHHHHHHHHHHHH
Q psy1524         298 NITQVFKELLVQAK  311 (592)
Q Consensus       298 gVeeLf~~Li~~i~  311 (592)
                      ||+++|+.+++.+.
T Consensus       186 gi~~l~~~i~~~~l  199 (201)
T 2gco_A          186 GVREVFEMATRAGL  199 (201)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998874

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.94  E-value=8.2e-26  Score=218.22  Aligned_cols=167  Identities=29%  Similarity=0.510  Sum_probs=141.9

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ....+||+|+|++|||||||+++|++..+...+.+|+. ++....+.+++..+.+.||||+|+                 
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----------------   79 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ-----------------   79 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTG-----------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCc-----------------
Confidence            35679999999999999999999999998877888877 677778888998899999999998                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            +.+..+...++..+|++|+|||++++.+|+.+..|+..+...
T Consensus        80 --------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~  121 (213)
T 3cph_A           80 --------------------------------------ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEH  121 (213)
T ss_dssp             --------------------------------------GGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             --------------------------------------HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence                                                  666667778899999999999999999999999999988775


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                       ...++|+|+|+||+|+. .                               +.+..+++..+++ ..++++++|||++|.
T Consensus       122 -~~~~~piilv~nK~Dl~-~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  167 (213)
T 3cph_A          122 -ANDEAQLLLVGNKSDME-T-------------------------------RVVTADQGEALAK-ELGIPFIESSAKNDD  167 (213)
T ss_dssp             -TTTCSEEEEEEECTTCS-S-------------------------------CCSCHHHHHHHHH-HHTCCEEECBTTTTB
T ss_pred             -cCCCCCEEEEEECCCCc-c-------------------------------cccCHHHHHHHHH-HcCCEEEEEeCCCCC
Confidence             34578999999999993 3                               4566777777776 345689999999999


Q ss_pred             cHHHHHHHHHHHHHHhc
Q psy1524         298 NITQVFKELLVQAKVKY  314 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~~  314 (592)
                      ||+++|+.|++.+....
T Consensus       168 gi~~l~~~l~~~~~~~~  184 (213)
T 3cph_A          168 NVNEIFFTLAKLIQEKI  184 (213)
T ss_dssp             SSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999886654

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.94  E-value=1.1e-26  Score=222.81  Aligned_cols=168  Identities=24%  Similarity=0.318  Sum_probs=109.1

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC--CCCCCccCcee-eeEEEEEeeCCe--EEEEEEEeCCCCCCCCcccccccccC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPKYKRTIE-EMHHEDFSMNGV--HLKLDILDTSGEQSGKGLKCGAVLWG  134 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~~~~Tt~-d~~~~~v~vdg~--~v~L~I~DT~G~~~~~~~~~~~~~~~  134 (592)
                      ...+||+|+|++|||||||+++|+++  .+...+.+|++ +.....+.+++.  .+.+.||||+|+              
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------------   83 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS--------------   83 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTT--------------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCc--------------
Confidence            46799999999999999999999998  88888888987 777888888887  889999999999              


Q ss_pred             CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524         135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI  214 (592)
Q Consensus       135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L  214 (592)
                                                               +++..++..++..+|++|+|||++++.+|+.+..|+..+
T Consensus        84 -----------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i  122 (208)
T 2yc2_C           84 -----------------------------------------DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELL  122 (208)
T ss_dssp             -----------------------------------------HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHH
Confidence                                                     778888888899999999999999999999999999998


Q ss_pred             HHhhc--CCCCCEEEEEeCCCCcc-cccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEc
Q psy1524         215 FETKA--STAVPIVVVGNKSDLAD-ENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA  291 (592)
Q Consensus       215 ~~~~~--~~~~PIILVgNK~DL~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~Ev  291 (592)
                      .....  ..++|+|+|+||+|+.. .                               +.++.+++..+++ ..+..+++|
T Consensus       123 ~~~~~~~~~~~piilv~nK~Dl~~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~  170 (208)
T 2yc2_C          123 KSARPDRERPLRAVLVANKTDLPPQR-------------------------------HQVRLDMAQDWAT-TNTLDFFDV  170 (208)
T ss_dssp             HHHCSCTTSCCEEEEEEECC--------------------------------------CCCHHHHHHHHH-HTTCEEEEC
T ss_pred             HHhhcccccCCcEEEEEECcccchhh-------------------------------ccCCHHHHHHHHH-HcCCEEEEe
Confidence            87632  15899999999999976 4                               5677888888887 456789999


Q ss_pred             ccCC-CccHHHHHHHHHHHHHHhc
Q psy1524         292 SAKD-NTNITQVFKELLVQAKVKY  314 (592)
Q Consensus       292 SAkt-g~gVeeLf~~Li~~i~~~~  314 (592)
                      ||++ |.||+++|+.+++.+....
T Consensus       171 Sa~~~~~gi~~l~~~i~~~~~~~~  194 (208)
T 2yc2_C          171 SANPPGKDADAPFLSIATTFYRNY  194 (208)
T ss_dssp             CC-------CHHHHHHHHHHHHHH
T ss_pred             ccCCCCcCHHHHHHHHHHHHHHHH
Confidence            9999 9999999999999886554

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.93  E-value=6.2e-26  Score=220.77  Aligned_cols=170  Identities=21%  Similarity=0.324  Sum_probs=137.4

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceee-eEEEEEee-CCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEE-MHHEDFSM-NGVHLKLDILDTSGEQSGKGLKCGAVLWGP  135 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d-~~~~~v~v-dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~  135 (592)
                      .....+||+|+|++|||||||+|+|+++.+...+.+|++. .....+.. ++..+.+.||||+|+               
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------------   71 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ---------------   71 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSG---------------
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCc---------------
Confidence            3467899999999999999999999999888877788773 33333333 344588999999999               


Q ss_pred             CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524         136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF  215 (592)
Q Consensus       136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~  215 (592)
                                                              +.+..+...++..+|++|+|||++++.+++.+..|+..+.
T Consensus        72 ----------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~  111 (218)
T 4djt_A           72 ----------------------------------------EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQ  111 (218)
T ss_dssp             ----------------------------------------GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             ----------------------------------------hhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence                                                    6666677788999999999999999999999999999888


Q ss_pred             HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524         216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD  295 (592)
Q Consensus       216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt  295 (592)
                      .. ...++|+|+|+||+|+.+.                               +.+..+++..++. ....++++|||++
T Consensus       112 ~~-~~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~  158 (218)
T 4djt_A          112 AV-VGNEAPIVVCANKIDIKNR-------------------------------QKISKKLVMEVLK-GKNYEYFEISAKT  158 (218)
T ss_dssp             HH-HCSSSCEEEEEECTTCC-----------------------------------CCHHHHHHHTT-TCCCEEEEEBTTT
T ss_pred             Hh-cCCCCCEEEEEECCCCccc-------------------------------cccCHHHHHHHHH-HcCCcEEEEecCC
Confidence            76 3456899999999999765                               5677777877776 5677899999999


Q ss_pred             CccHHHHHHHHHHHHHHhcc
Q psy1524         296 NTNITQVFKELLVQAKVKYN  315 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~~~~~  315 (592)
                      |.||+++|+.+++.+.....
T Consensus       159 g~gv~~l~~~l~~~~~~~~~  178 (218)
T 4djt_A          159 AHNFGLPFLHLARIFTGRPD  178 (218)
T ss_dssp             TBTTTHHHHHHHHHHHCCTT
T ss_pred             CCCHHHHHHHHHHHHhcccc
Confidence            99999999999999865443

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.93  E-value=1.3e-25  Score=214.15  Aligned_cols=174  Identities=18%  Similarity=0.193  Sum_probs=127.4

Q ss_pred             CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCC-CccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524          56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSP-KYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG  134 (592)
Q Consensus        56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~-~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~  134 (592)
                      .......+||+|+|++|||||||+++|+++.+.. .+.+|++. ....+  ++..+.++||||+|+              
T Consensus        11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~-~~~~~--~~~~~~~~i~Dt~G~--------------   73 (199)
T 4bas_A           11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGY-NVETF--EKGRVAFTVFDMGGA--------------   73 (199)
T ss_dssp             -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSE-EEEEE--EETTEEEEEEEECCS--------------
T ss_pred             ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccce-eEEEE--EeCCEEEEEEECCCC--------------
Confidence            3455778999999999999999999999999987 78888872 22333  344577888999999              


Q ss_pred             CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524         135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI  214 (592)
Q Consensus       135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L  214 (592)
                                                               +++..++..+++++|++|+|||++++.+|..+..|+..+
T Consensus        74 -----------------------------------------~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~  112 (199)
T 4bas_A           74 -----------------------------------------KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAM  112 (199)
T ss_dssp             -----------------------------------------GGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHH
T ss_pred             -----------------------------------------HhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHH
Confidence                                                     777788888899999999999999999999999998888


Q ss_pred             HHhhcC-------CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCe
Q psy1524         215 FETKAS-------TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG  287 (592)
Q Consensus       215 ~~~~~~-------~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~  287 (592)
                      ......       .++|+|||+||+|+......                            ..+..............+.
T Consensus       113 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~  164 (199)
T 4bas_A          113 LKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA----------------------------AELVEILDLTTLMGDHPFV  164 (199)
T ss_dssp             HTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH----------------------------HHHHHHHTHHHHHTTSCEE
T ss_pred             HhChhhhhcccccCCCCEEEEEECcCCCCCCCH----------------------------HHHHHHhcchhhccCCeeE
Confidence            664211       37899999999999754100                            0011111111111235678


Q ss_pred             EEEcccCCCccHHHHHHHHHHHHHHhcc
Q psy1524         288 FVEASAKDNTNITQVFKELLVQAKVKYN  315 (592)
Q Consensus       288 ~~EvSAktg~gVeeLf~~Li~~i~~~~~  315 (592)
                      +++|||++|.||+++|+.|++.+.....
T Consensus       165 ~~~~Sa~~g~gv~~l~~~l~~~~~~~~~  192 (199)
T 4bas_A          165 IFASNGLKGTGVHEGFSWLQETASRQSG  192 (199)
T ss_dssp             EEECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred             EEEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999876543

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=2e-25  Score=216.24  Aligned_cols=177  Identities=26%  Similarity=0.417  Sum_probs=137.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      +..+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.+.||||+|+                   
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~-------------------   83 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ-------------------   83 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTC-------------------
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCc-------------------
Confidence            4568999999999999999999999999888889988777667888999999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH-HHHHHHHHHhh
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI-RLIRDHIFETK  218 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L~~~~  218 (592)
                                                          +++..+...++..+|++|+|||++++.+|+.+ ..|+..+... 
T Consensus        84 ------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-  126 (207)
T 2fv8_A           84 ------------------------------------EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF-  126 (207)
T ss_dssp             ------------------------------------TTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHH-
T ss_pred             ------------------------------------HHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-
Confidence                                                55666667788999999999999999999999 5687777664 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                       ..++|+|+|+||+|+.......        ..+.           ....+.++.+++..++.......+++|||++|.|
T Consensus       127 -~~~~piilv~nK~Dl~~~~~~~--------~~~~-----------~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g  186 (207)
T 2fv8_A          127 -CPNVPIILVANKKDLRSDEHVR--------TELA-----------RMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEG  186 (207)
T ss_dssp             -STTCCEEEEEECGGGGGCHHHH--------HHHH-----------HTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT
T ss_pred             -CCCCCEEEEEEchhhhccccch--------hhhh-----------hcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCC
Confidence             3589999999999997542100        0000           0012467788888888754444899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQAKV  312 (592)
Q Consensus       299 VeeLf~~Li~~i~~  312 (592)
                      |+++|+.|++.+..
T Consensus       187 i~el~~~l~~~i~~  200 (207)
T 2fv8_A          187 VREVFETATRAALQ  200 (207)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998854

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.93  E-value=9.3e-26  Score=214.00  Aligned_cols=165  Identities=21%  Similarity=0.301  Sum_probs=130.1

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCcc-----------Ccee-eeEEEEE-eeCCeEEEEEEEeCCCCCCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYK-----------RTIE-EMHHEDF-SMNGVHLKLDILDTSGEQSGK  124 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~-----------~Tt~-d~~~~~v-~vdg~~v~L~I~DT~G~~~~~  124 (592)
                      .....+||+|+|++|||||||++.+. +.+...+.           +|++ ++....+ .+++..+.++||||+|+    
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----   84 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQ----   84 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSC----
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCCh----
Confidence            34678999999999999999996554 55554433           3443 3333333 56788899999999999    


Q ss_pred             cccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCC-----
Q psy1524         125 GLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAID-----  199 (592)
Q Consensus       125 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvs-----  199 (592)
                                                                         ++|..++..+++++|++|+|||++     
T Consensus        85 ---------------------------------------------------~~~~~~~~~~~~~~d~~i~v~D~~~~~~~  113 (198)
T 3t1o_A           85 ---------------------------------------------------VFYNASRKLILRGVDGIVFVADSAPNRLR  113 (198)
T ss_dssp             ---------------------------------------------------CSCSHHHHHHTTTCCEEEEEEECCGGGHH
T ss_pred             ---------------------------------------------------HHHHHHHHHHHhcCCEEEEEEECCcchhh
Confidence                                                               788889999999999999999999     


Q ss_pred             -CcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHH
Q psy1524         200 -DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTES  278 (592)
Q Consensus       200 -d~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~  278 (592)
                       +..+|+.+..|+..+..  ...++|+|||+||+|+..                                 .++.+++..
T Consensus       114 ~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~Dl~~---------------------------------~~~~~~~~~  158 (198)
T 3t1o_A          114 ANAESMRNMRENLAEYGL--TLDDVPIVIQVNKRDLPD---------------------------------ALPVEMVRA  158 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECTTSTT---------------------------------CCCHHHHHH
T ss_pred             HhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEchhccc---------------------------------ccCHHHHHH
Confidence             55667777777776632  346899999999999864                                 256778888


Q ss_pred             HHhhcCCC-eEEEcccCCCccHHHHHHHHHHHHHHhc
Q psy1524         279 VVQVDWEN-GFVEASAKDNTNITQVFKELLVQAKVKY  314 (592)
Q Consensus       279 la~~~~~~-~~~EvSAktg~gVeeLf~~Li~~i~~~~  314 (592)
                      +++ ..+. .+++|||++|.||+++|+++++.+..+.
T Consensus       159 ~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~  194 (198)
T 3t1o_A          159 VVD-PEGKFPVLEAVATEGKGVFETLKEVSRLVLARV  194 (198)
T ss_dssp             HHC-TTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             HHH-hcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence            877 4455 8999999999999999999999987654

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.93  E-value=2.3e-27  Score=228.36  Aligned_cols=166  Identities=31%  Similarity=0.494  Sum_probs=131.0

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ..++.+||+|+|++|||||||+++|+++.+...+.+++. +.....+.+++..+.+.||||+|+                
T Consensus        29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------------   92 (199)
T 3l0i_B           29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ----------------   92 (199)
T ss_dssp             CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTC----------------
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCc----------------
Confidence            346789999999999999999999999988877777776 677788889999999999999998                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             +++..+...+++.+|++|+|||++++.+|+.+..|+..+..
T Consensus        93 ---------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  133 (199)
T 3l0i_B           93 ---------------------------------------ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR  133 (199)
T ss_dssp             ---------------------------------------TTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHS
T ss_pred             ---------------------------------------HhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence                                                   45555555678999999999999999999999999998866


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      . ...++|+|||+||+|+...                               +.++.+++..++. ..++++++|||++|
T Consensus       134 ~-~~~~~p~ilv~nK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~vSA~~g  180 (199)
T 3l0i_B          134 Y-ASENVNKLLVGNKCDLTTK-------------------------------KVVDYTTAKEFAD-SLGIPFLETSAKNA  180 (199)
T ss_dssp             C-C-CCSEEEEC-CCSSCC---------------------------------CCCCSCC-CHHHH-TTTCCBCCCCC---
T ss_pred             h-ccCCCCEEEEEECccCCcc-------------------------------ccCCHHHHHHHHH-HcCCeEEEEECCCC
Confidence            5 3457999999999999765                               4455555566665 45678999999999


Q ss_pred             ccHHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQAK  311 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~  311 (592)
                      .||+++|+.|++.+.
T Consensus       181 ~gv~~l~~~l~~~l~  195 (199)
T 3l0i_B          181 TNVEQSFMTMAAEIK  195 (199)
T ss_dssp             HHHHHHHHHHTTTTT
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999988763

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=9.5e-25  Score=207.39  Aligned_cols=159  Identities=16%  Similarity=0.246  Sum_probs=124.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||+++|+++.+. .+.+|++ .....+.+++  +.++||||+|+                   
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~-------------------   70 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG-SNVEEIVINN--TRFLMWDIGGQ-------------------   70 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC-SSCEEEEETT--EEEEEEECCC--------------------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc-cceEEEEECC--EEEEEEECCCC-------------------
Confidence            34689999999999999999999988887 5667766 2234555666  67777999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +++..++..++.++|++|+|||++++.+|+.+..|+..+.....
T Consensus        71 ------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~  114 (187)
T 1zj6_A           71 ------------------------------------ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED  114 (187)
T ss_dssp             ---------------------------------------CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG
T ss_pred             ------------------------------------HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh
Confidence                                                66777788889999999999999999999999999988876533


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh----cCCCeEEEcccCC
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV----DWENGFVEASAKD  295 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~----~~~~~~~EvSAkt  295 (592)
                      ..+.|+|+|+||+|+...                                 ...++.......    .....+++|||++
T Consensus       115 ~~~~piilv~NK~Dl~~~---------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~  161 (187)
T 1zj6_A          115 LRKAGLLIFANKQDVKEC---------------------------------MTVAEISQFLKLTSIKDHQWHIQACCALT  161 (187)
T ss_dssp             GTTCEEEEEEECTTSTTC---------------------------------CCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred             hCCCeEEEEEECCCCcCC---------------------------------CCHHHHHHHhChhhhcCCCcEEEEccCCC
Confidence            468999999999999753                                 122333332221    2345799999999


Q ss_pred             CccHHHHHHHHHHHH
Q psy1524         296 NTNITQVFKELLVQA  310 (592)
Q Consensus       296 g~gVeeLf~~Li~~i  310 (592)
                      |.||+++|+++++.+
T Consensus       162 g~gi~~l~~~l~~~~  176 (187)
T 1zj6_A          162 GEGLCQGLEWMMSRL  176 (187)
T ss_dssp             TBTHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHH
Confidence            999999999999987

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.92  E-value=5.3e-25  Score=212.56  Aligned_cols=159  Identities=14%  Similarity=0.257  Sum_probs=120.0

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||+++|+++.+. .+.+|++.. ...+.+++  +.+++|||+|+                   
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~-------------------   79 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGH-------------------   79 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC--------------------
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCc-------------------
Confidence            34589999999999999999999988774 456666533 35566777  67788999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          ++++.++..+++.+|++|+|||++++.+|+.+..|+..+.+...
T Consensus        80 ------------------------------------~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~  123 (198)
T 1f6b_A           80 ------------------------------------IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDET  123 (198)
T ss_dssp             ---------------------------------------CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG
T ss_pred             ------------------------------------HhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc
Confidence                                                66667777789999999999999999999999999998876544


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh----------------c
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV----------------D  283 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~----------------~  283 (592)
                      ..++|+|+|+||+|+...                                 ++.+++..++..                .
T Consensus       124 ~~~~piilv~NK~Dl~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
T 1f6b_A          124 IANVPILILGNKIDRPEA---------------------------------ISEERLREMFGLYGQTTGKGSVSLKELNA  170 (198)
T ss_dssp             GTTSCEEEEEECTTSTTC---------------------------------CCHHHHHHHHTCTTTCCCSSCCCTTTCCS
T ss_pred             cCCCcEEEEEECCCcccc---------------------------------CCHHHHHHHhCcccccccccccccccccC
Confidence            468999999999999642                                 334444444331                1


Q ss_pred             CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         284 WENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       284 ~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      ....+++|||++|.||+++|+++++.+
T Consensus       171 ~~~~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          171 RPLEVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             CCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence            345799999999999999999997643

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.92  E-value=1.1e-24  Score=208.69  Aligned_cols=158  Identities=18%  Similarity=0.319  Sum_probs=124.3

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||+++|+++.+. .+.+|+.. ....+.+++  +.+++|||+|+                   
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~-------------------   77 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP-TSEELAIGN--IKFTTFDLGGH-------------------   77 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC-EEEEEEETT--EEEEEEECCCS-------------------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC-CeEEEEECC--EEEEEEECCCC-------------------
Confidence            34579999999999999999999988875 45666654 356677777  67778999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +.++.++..+++.+|++|+|||++++.||+.+..|+..+.....
T Consensus        78 ------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  121 (190)
T 1m2o_B           78 ------------------------------------IQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE  121 (190)
T ss_dssp             ------------------------------------GGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG
T ss_pred             ------------------------------------HHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchh
Confidence                                                56666677788999999999999999999999999988876544


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh-----------cCCCeE
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV-----------DWENGF  288 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~-----------~~~~~~  288 (592)
                      ..++|+++|+||+|+...                                 ++.+++......           ....++
T Consensus       122 ~~~~piilv~NK~Dl~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (190)
T 1m2o_B          122 LKDVPFVILGNKIDAPNA---------------------------------VSEAELRSALGLLNTTGSQRIEGQRPVEV  168 (190)
T ss_dssp             GTTCCEEEEEECTTSTTC---------------------------------CCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred             hcCCCEEEEEECCCCcCC---------------------------------CCHHHHHHHhCCccccccccccccceEEE
Confidence            468999999999999642                                 223333333221           245679


Q ss_pred             EEcccCCCccHHHHHHHHHHH
Q psy1524         289 VEASAKDNTNITQVFKELLVQ  309 (592)
Q Consensus       289 ~EvSAktg~gVeeLf~~Li~~  309 (592)
                      ++|||++|.||+++|+++++.
T Consensus       169 ~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          169 FMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEeECCcCCCHHHHHHHHHhh
Confidence            999999999999999998753

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.92  E-value=1.7e-25  Score=218.67  Aligned_cols=166  Identities=23%  Similarity=0.375  Sum_probs=138.7

Q ss_pred             CCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524          57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP  135 (592)
Q Consensus        57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~  135 (592)
                      ......+||+|+|++|||||||+++|+.+.+...+.+|.+ +.....+.+++..+.+.||||+|+               
T Consensus        10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------   74 (221)
T 3gj0_A           10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ---------------   74 (221)
T ss_dssp             TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSG---------------
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCh---------------
Confidence            3456789999999999999999999888888777778886 666777788999999999999998               


Q ss_pred             CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524         136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF  215 (592)
Q Consensus       136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~  215 (592)
                                                              +.+..+...+++++|++|+|||++++.+|..+..|+..+.
T Consensus        75 ----------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~  114 (221)
T 3gj0_A           75 ----------------------------------------EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV  114 (221)
T ss_dssp             ----------------------------------------GGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             ----------------------------------------HHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence                                                    6677777888999999999999999999999999999998


Q ss_pred             HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524         216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD  295 (592)
Q Consensus       216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt  295 (592)
                      ..  ..++|+|+|+||+|+.+..                                +. .++..+++ ..+..|++|||++
T Consensus       115 ~~--~~~~p~ilv~nK~Dl~~~~--------------------------------~~-~~~~~~~~-~~~~~~~~~Sa~~  158 (221)
T 3gj0_A          115 RV--CENIPIVLCGNKVDIKDRK--------------------------------VK-AKSIVFHR-KKNLQYYDISAKS  158 (221)
T ss_dssp             HH--STTCCEEEEEECTTSSSCS--------------------------------SC-GGGCCHHH-HHTCEEEECBGGG
T ss_pred             Hh--CCCCCEEEEEECCcccccc--------------------------------cc-HHHHHHHH-HcCCEEEEEeCCC
Confidence            75  3589999999999997541                                11 12223333 3457899999999


Q ss_pred             CccHHHHHHHHHHHHHHh
Q psy1524         296 NTNITQVFKELLVQAKVK  313 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~~~  313 (592)
                      |.||+++|+.+++.+...
T Consensus       159 ~~gi~~l~~~l~~~l~~~  176 (221)
T 3gj0_A          159 NYNFEKPFLWLARKLIGD  176 (221)
T ss_dssp             TBTTTHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhC
Confidence            999999999999998554

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.92  E-value=2.2e-24  Score=199.13  Aligned_cols=157  Identities=14%  Similarity=0.194  Sum_probs=122.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      +||+|+|++|||||||+++|+++.+.. +.+|++ .....+..++  +.++||||+|+                      
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~----------------------   54 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKN--ISFTVWDVGGQ----------------------   54 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS-CCEEEEECSS--CEEEEEECCCC----------------------
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc-eeEEEEEECC--EEEEEEEcCCC----------------------
Confidence            589999999999999999999888764 566766 3333444444  67778999999                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA  222 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~  222 (592)
                                                       +++..++..++.++|++|+|||++++.+|+.+..|+..+.......+
T Consensus        55 ---------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  101 (164)
T 1r8s_A           55 ---------------------------------DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRD  101 (164)
T ss_dssp             ---------------------------------GGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT
T ss_pred             ---------------------------------hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcC
Confidence                                             77888888999999999999999999999999999888876444568


Q ss_pred             CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHH-HHh---hcCCCeEEEcccCCCcc
Q psy1524         223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTES-VVQ---VDWENGFVEASAKDNTN  298 (592)
Q Consensus       223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~-la~---~~~~~~~~EvSAktg~g  298 (592)
                      +|+++|+||+|+....                                 ..++... +..   .....++++|||++|.|
T Consensus       102 ~piilv~nK~Dl~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  148 (164)
T 1r8s_A          102 AVLLVFANKQDLPNAM---------------------------------NAAEITDKLGLHSLRHRNWYIQATCATSGDG  148 (164)
T ss_dssp             CEEEEEEECTTSTTCC---------------------------------CHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred             CeEEEEEECcCCcCCC---------------------------------CHHHHHHHhCcccccCccEEEEEcccCCCcC
Confidence            9999999999996541                                 1111111 111   02345699999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQAK  311 (592)
Q Consensus       299 VeeLf~~Li~~i~  311 (592)
                      |+++|+.+++.+.
T Consensus       149 i~~l~~~l~~~i~  161 (164)
T 1r8s_A          149 LYEGLDWLSNQLR  161 (164)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998874

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.92  E-value=1.1e-24  Score=207.58  Aligned_cols=161  Identities=16%  Similarity=0.243  Sum_probs=127.9

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ....+||+|+|++|||||||+++|+++.+...+.+|++..+. .+..+  .+.+.||||+|+                  
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~------------------   77 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKG--NVTIKLWDIGGQ------------------   77 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEET--TEEEEEEEECCS------------------
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEEeC--CEEEEEEECCCC------------------
Confidence            356799999999999999999999999998888888874433 23334  467778999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           +++..++..++..+|++|+|||++++.+|+.+..|+..+....
T Consensus        78 -------------------------------------~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~  120 (188)
T 1zd9_A           78 -------------------------------------PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP  120 (188)
T ss_dssp             -------------------------------------HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG
T ss_pred             -------------------------------------HhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCc
Confidence                                                 7788888889999999999999999999999999988887643


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHH-HHHh---hcCCCeEEEcccC
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTE-SVVQ---VDWENGFVEASAK  294 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~-~la~---~~~~~~~~EvSAk  294 (592)
                      ...++|+|+|+||+|+....                                 ..++.. .+..   ......+++|||+
T Consensus       121 ~~~~~piilv~NK~Dl~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~SA~  167 (188)
T 1zd9_A          121 QLQGIPVLVLGNKRDLPGAL---------------------------------DEKELIEKMNLSAIQDREICCYSISCK  167 (188)
T ss_dssp             GGTTCCEEEEEECTTSTTCC---------------------------------CHHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred             ccCCCCEEEEEECCCCccCC---------------------------------CHHHHHHHhChhhhccCCeeEEEEECC
Confidence            34689999999999997541                                 111111 1111   1234579999999


Q ss_pred             CCccHHHHHHHHHHHH
Q psy1524         295 DNTNITQVFKELLVQA  310 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i  310 (592)
                      +|.||+++|+.|++.+
T Consensus       168 ~g~gv~~l~~~l~~~~  183 (188)
T 1zd9_A          168 EKDNIDITLQWLIQHS  183 (188)
T ss_dssp             TCTTHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999999876

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.92  E-value=1.8e-24  Score=205.55  Aligned_cols=161  Identities=18%  Similarity=0.290  Sum_probs=124.7

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||+++|+++.+. .+.+|++ .....+.+++  +.+++|||+|+                   
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g-~~~~~~~~~~--~~l~i~Dt~G~-------------------   70 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG-FNIKSVQSQG--FKLNVWDIGGQ-------------------   70 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT-EEEEEEEETT--EEEEEEECSSC-------------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC-eEEEEEEECC--EEEEEEECCCC-------------------
Confidence            45699999999999999999999987553 4555655 3344566665  67778999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +.+..++..++.++|++|+|||++++.+|+.+..|+..+.....
T Consensus        71 ------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  114 (181)
T 1fzq_A           71 ------------------------------------RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK  114 (181)
T ss_dssp             ------------------------------------GGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG
T ss_pred             ------------------------------------HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh
Confidence                                                77888889999999999999999999999999998887765433


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh----hcCCCeEEEcccCC
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ----VDWENGFVEASAKD  295 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~----~~~~~~~~EvSAkt  295 (592)
                      ..++|+++|+||+|+...                               +  ..++......    ......+++|||++
T Consensus       115 ~~~~piilv~NK~Dl~~~-------------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (181)
T 1fzq_A          115 LSCVPVLIFANKQDLLTA-------------------------------A--PASEIAEGLNLHTIRDRVWQIQSCSALT  161 (181)
T ss_dssp             GTTCCEEEEEECTTSTTC-------------------------------C--CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             hcCCCEEEEEECcCcccC-------------------------------C--CHHHHHHHhCchhccCCceEEEEccCCC
Confidence            467999999999999754                               1  1122221111    12345799999999


Q ss_pred             CccHHHHHHHHHHHHHH
Q psy1524         296 NTNITQVFKELLVQAKV  312 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~~  312 (592)
                      |.||+++|+++++.+..
T Consensus       162 g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          162 GEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             CTTHHHHHHHHHHTC--
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999987743

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.92  E-value=1.7e-24  Score=200.86  Aligned_cols=160  Identities=19%  Similarity=0.239  Sum_probs=125.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||+++|+++.+.. +.+|++ .....+.+++  +.+.||||+|+                   
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~Dt~G~-------------------   61 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG-FNVETVTYKN--LKFQVWDLGGL-------------------   61 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS-EEEEEEEETT--EEEEEEEECCC-------------------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc-cceEEEEECC--EEEEEEECCCC-------------------
Confidence            456999999999999999999999888864 556665 3445566664  66777999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +.+..++..+++.+|++|+|||++++.+|..+..|+..+.....
T Consensus        62 ------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~  105 (171)
T 1upt_A           62 ------------------------------------TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE  105 (171)
T ss_dssp             ------------------------------------GGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG
T ss_pred             ------------------------------------hhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh
Confidence                                                66777777789999999999999999999999998888766433


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHH-HH----HhhcCCCeEEEcccC
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTE-SV----VQVDWENGFVEASAK  294 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~-~l----a~~~~~~~~~EvSAk  294 (592)
                      ..++|+++|+||+|+....                                 ..++.. .+    +. ....++++|||+
T Consensus       106 ~~~~piilv~nK~Dl~~~~---------------------------------~~~~~~~~~~~~~~~-~~~~~~~~~Sa~  151 (171)
T 1upt_A          106 LRKAILVVFANKQDMEQAM---------------------------------TSSEMANSLGLPALK-DRKWQIFKTSAT  151 (171)
T ss_dssp             GTTCEEEEEEECTTSTTCC---------------------------------CHHHHHHHHTGGGCT-TSCEEEEECCTT
T ss_pred             hCCCEEEEEEECCCCcCCC---------------------------------CHHHHHHHhCchhcc-CCceEEEECcCC
Confidence            4689999999999997541                                 111111 11    11 234579999999


Q ss_pred             CCccHHHHHHHHHHHHHH
Q psy1524         295 DNTNITQVFKELLVQAKV  312 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i~~  312 (592)
                      +|.||+++|+.+++.+..
T Consensus       152 ~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          152 KGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             TCTTHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhh
Confidence            999999999999998854

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.92  E-value=1.2e-24  Score=206.01  Aligned_cols=161  Identities=16%  Similarity=0.227  Sum_probs=123.0

Q ss_pred             CCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          57 EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        57 ~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ......+||+|+|++|||||||+++|+++.+ ..+.+|++.. ...+.+++  +.+.||||+|+                
T Consensus        16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~----------------   75 (181)
T 2h17_A           16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVINN--TRFLMWDIGGQ----------------   75 (181)
T ss_dssp             -----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEETT--EEEEEEEESSS----------------
T ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEECC--EEEEEEECCCC----------------
Confidence            3445679999999999999999999999888 4566666632 24455666  67777999999                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             +++..++..++.++|++|+|||++++.+|+.+..|+..+..
T Consensus        76 ---------------------------------------~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~  116 (181)
T 2h17_A           76 ---------------------------------------ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA  116 (181)
T ss_dssp             ---------------------------------------GGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHT
T ss_pred             ---------------------------------------HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHh
Confidence                                                   66677777889999999999999999999999999888876


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh----hcCCCeEEEcc
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ----VDWENGFVEAS  292 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~----~~~~~~~~EvS  292 (592)
                      .....++|+|+|+||+|+...                                 ...++......    ......+++||
T Consensus       117 ~~~~~~~piilv~NK~Dl~~~---------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~S  163 (181)
T 2h17_A          117 HEDLRKAGLLIFANKQDVKEC---------------------------------MTVAEISQFLKLTSIKDHQWHIQACC  163 (181)
T ss_dssp             CGGGTTCEEEEEEECTTSTTC---------------------------------CCHHHHHHHTTGGGCCSSCEEEEECB
T ss_pred             ChhhCCCeEEEEEECCCcccC---------------------------------CCHHHHHHHhCcccccCCceEEEEcc
Confidence            433468999999999999753                                 12222222221    12345799999


Q ss_pred             cCCCccHHHHHHHHHHH
Q psy1524         293 AKDNTNITQVFKELLVQ  309 (592)
Q Consensus       293 Aktg~gVeeLf~~Li~~  309 (592)
                      |++|.||+++|+.|++.
T Consensus       164 a~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          164 ALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             TTTTBTHHHHHHHHHTC
T ss_pred             CCCCcCHHHHHHHHHhh
Confidence            99999999999998764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.92  E-value=4.3e-24  Score=202.11  Aligned_cols=162  Identities=15%  Similarity=0.266  Sum_probs=127.9

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||+++|+++. ...+.+|++ .....+.+++  +.++||||+|+                   
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~-~~~~~~~~~~--~~~~~~Dt~G~-------------------   72 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG-FNIKTLEHRG--FKLNIWDVGGQ-------------------   72 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS-EEEEEEEETT--EEEEEEEECCS-------------------
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc-cceEEEEECC--EEEEEEECCCC-------------------
Confidence            456999999999999999999999887 666777776 3345556665  66777999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +++..++..+++++|++|+|||++++.+|+.+..|+..+.....
T Consensus        73 ------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~  116 (186)
T 1ksh_A           73 ------------------------------------KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER  116 (186)
T ss_dssp             ------------------------------------HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG
T ss_pred             ------------------------------------HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh
Confidence                                                66777777789999999999999999999999999888876544


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh----hcCCCeEEEcccCC
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ----VDWENGFVEASAKD  295 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~----~~~~~~~~EvSAkt  295 (592)
                      ..++|+++|+||+|+...                                 ...++......    .....++++|||++
T Consensus       117 ~~~~piilv~nK~Dl~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (186)
T 1ksh_A          117 LAGATLLIFANKQDLPGA---------------------------------LSCNAIQEALELDSIRSHHWRIQGCSAVT  163 (186)
T ss_dssp             GTTCEEEEEEECTTSTTC---------------------------------CCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             cCCCcEEEEEeCccCCCC---------------------------------CCHHHHHHHhChhhccCCceEEEEeeCCC
Confidence            468999999999999754                                 11222222211    12355799999999


Q ss_pred             CccHHHHHHHHHHHHHHh
Q psy1524         296 NTNITQVFKELLVQAKVK  313 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~~~  313 (592)
                      |.||+++|+.+++.+.++
T Consensus       164 ~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          164 GEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             CTTHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhc
Confidence            999999999999988544

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.92  E-value=3.3e-24  Score=204.21  Aligned_cols=162  Identities=20%  Similarity=0.247  Sum_probs=128.2

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCC-CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNT-FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~-f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ....+||+|+|++|||||||+++|+++. +...+.+|++ .....+.+++  +.+.||||+|+                 
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~-----------------   77 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQ-----------------   77 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCS-----------------
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCC-----------------
Confidence            3567999999999999999999999887 6666777775 4556667776  56777999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            +++..++..++.++|++|+|||++++.+|+.+..|+..+...
T Consensus        78 --------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~  119 (190)
T 2h57_A           78 --------------------------------------GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNH  119 (190)
T ss_dssp             --------------------------------------TTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHS
T ss_pred             --------------------------------------HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhC
Confidence                                                  667777778899999999999999999999999999888765


Q ss_pred             hcC--CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh----cCCCeEEEc
Q psy1524         218 KAS--TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV----DWENGFVEA  291 (592)
Q Consensus       218 ~~~--~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~----~~~~~~~Ev  291 (592)
                      ...  .++|+|+|+||+|+...                                 +..++....+..    .....+++|
T Consensus       120 ~~~~~~~~piilv~nK~Dl~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  166 (190)
T 2h57_A          120 PDIKHRRIPILFFANKMDLRDA---------------------------------VTSVKVSQLLCLENIKDKPWHICAS  166 (190)
T ss_dssp             TTTTTSCCCEEEEEECTTSTTC---------------------------------CCHHHHHHHHTGGGCCSSCEEEEEC
T ss_pred             hhhccCCCeEEEEEeCcCcccC---------------------------------CCHHHHHHHhChhhccCCceEEEEc
Confidence            333  58999999999999643                                 233444444321    135679999


Q ss_pred             ccCCCccHHHHHHHHHHHHH
Q psy1524         292 SAKDNTNITQVFKELLVQAK  311 (592)
Q Consensus       292 SAktg~gVeeLf~~Li~~i~  311 (592)
                      ||++|.||+++|+.|.+.+.
T Consensus       167 Sa~~~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          167 DAIKGEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             BTTTTBTHHHHHHHHHHHC-
T ss_pred             cCCCCcCHHHHHHHHHHHHH
Confidence            99999999999999998773

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.91  E-value=8.5e-24  Score=203.57  Aligned_cols=167  Identities=31%  Similarity=0.470  Sum_probs=140.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ++.+||+|+|++|||||||+++|++..+...+.+|++ +.....+.+++..+.+.||||+|+                  
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~------------------   64 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ------------------   64 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSG------------------
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc------------------
Confidence            4679999999999999999999999998877888876 677788889999999999999998                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           +++..+...++..+|++++|||+++..+|+++..|+..+... 
T Consensus        65 -------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-  106 (199)
T 2f9l_A           65 -------------------------------------ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-  106 (199)
T ss_dssp             -------------------------------------GGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-
T ss_pred             -------------------------------------hhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-
Confidence                                                 566666677888999999999999999999998888877654 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      ...+.|+++|+||+|+.+.                               +.++.+++..++. ...+.+++|||+++.|
T Consensus       107 ~~~~~~i~~v~nK~Dl~~~-------------------------------~~~~~~~a~~l~~-~~~~~~~d~Sal~~~~  154 (199)
T 2f9l_A          107 ADSNIVIMLVGNKSDLRHL-------------------------------RAVPTDEARAFAE-KNNLSFIETSALDSTN  154 (199)
T ss_dssp             SCTTCEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECCTTTCTT
T ss_pred             cCCCCeEEEEEECcccccc-------------------------------cCcCHHHHHHHHH-HcCCeEEEEeCCCCCC
Confidence            3457899999999999765                               4566777888876 4567899999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q psy1524         299 ITQVFKELLVQAKVKY  314 (592)
Q Consensus       299 VeeLf~~Li~~i~~~~  314 (592)
                      ++++|+.+.+.+....
T Consensus       155 i~~l~~~l~~~~~~~~  170 (199)
T 2f9l_A          155 VEEAFKNILTEIYRIV  170 (199)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999986543

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.85  E-value=2.1e-26  Score=222.15  Aligned_cols=175  Identities=24%  Similarity=0.438  Sum_probs=140.9

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.++||||+|+                   
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~-------------------   88 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ-------------------   88 (204)
Confidence            4569999999999999999999999999888889998877777888888899999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhh
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETK  218 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~  218 (592)
                                                          +++..+...+++++|++|+|||++++.+|+.+. .|+..+... 
T Consensus        89 ------------------------------------~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~-  131 (204)
T 3th5_A           89 ------------------------------------EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-  131 (204)
Confidence                                                677778888899999999999999999999997 677777654 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                       ..++|+|+|+||+|+.+......        .+.           ....+.++.+++..+++.....++++|||++|.|
T Consensus       132 -~~~~piilv~NK~Dl~~~~~~~~--------~~~-----------~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~g  191 (204)
T 3th5_A          132 -CPNTPIILVGTKLDLRDDKDTIE--------KLK-----------EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG  191 (204)
Confidence             24789999999999976421100        000           0011356667777777643333799999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQA  310 (592)
Q Consensus       299 VeeLf~~Li~~i  310 (592)
                      |+++|+.+++.+
T Consensus       192 i~~l~~~l~~~i  203 (204)
T 3th5_A          192 LKTVFDEAIRAV  203 (204)
Confidence            999999998765

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.91  E-value=5e-24  Score=219.74  Aligned_cols=176  Identities=23%  Similarity=0.410  Sum_probs=145.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+++..+.++||||+|+                   
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~-------------------  213 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL-------------------  213 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCC-------------------
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCc-------------------
Confidence            3458999999999999999999999999989999999888888889999999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHH-HHHHHHHHhh
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIR-LIRDHIFETK  218 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~-~~l~~L~~~~  218 (592)
                                                          +.+..+...++..+|++|+|||++++.+|+.+. .|+..+... 
T Consensus       214 ------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-  256 (332)
T 2wkq_A          214 ------------------------------------EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH-  256 (332)
T ss_dssp             ------------------------------------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-
T ss_pred             ------------------------------------hhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhh-
Confidence                                                666777777899999999999999999999997 687777764 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                       ..++|+|+|+||+|+........        .+           .....+.++.+++..+++.....+|++|||++|.|
T Consensus       257 -~~~~p~ilv~nK~Dl~~~~~~~~--------~~-----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  316 (332)
T 2wkq_A          257 -CPNTPIILVGTKLDLRDDKDTIE--------KL-----------KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG  316 (332)
T ss_dssp             -CTTSCEEEEEECHHHHTCHHHHH--------HH-----------HHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT
T ss_pred             -CCCCcEEEEEEchhcccccchhh--------hc-----------cccccccccHHHHHHHHHHcCCcEEEEecCCCCcC
Confidence             34899999999999975411000        00           00112678888999988854444899999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQAK  311 (592)
Q Consensus       299 VeeLf~~Li~~i~  311 (592)
                      |+++|+.+++.+.
T Consensus       317 i~~l~~~l~~~~~  329 (332)
T 2wkq_A          317 LKTVFDEAIRAVL  329 (332)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998874

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.91  E-value=1e-23  Score=202.28  Aligned_cols=159  Identities=13%  Similarity=0.207  Sum_probs=120.3

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||+++|+.+.+.. +.+|++ .....+..++  +.++||||+|+                   
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~-------------------   83 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKN--ICFTVWDVGGQ-------------------   83 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT-EEEEEEEETT--EEEEEEECC---------------------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc-eeEEEEEECC--EEEEEEECCCC-------------------
Confidence            456999999999999999999999888763 455555 3344455555  67778999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +++..++..++.++|++|+|||++++.+|+.+..|+..+.....
T Consensus        84 ------------------------------------~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~  127 (192)
T 2b6h_A           84 ------------------------------------DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDE  127 (192)
T ss_dssp             ---------------------------------------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG
T ss_pred             ------------------------------------HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccc
Confidence                                                67777888899999999999999999999999999888876544


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHH-HHh---hcCCCeEEEcccCC
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTES-VVQ---VDWENGFVEASAKD  295 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~-la~---~~~~~~~~EvSAkt  295 (592)
                      ..++|+|+|+||+|+...                                 ...++... +..   .....++++|||++
T Consensus       128 ~~~~piilv~NK~Dl~~~---------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~SA~~  174 (192)
T 2b6h_A          128 LRDAVLLVFANKQDMPNA---------------------------------MPVSELTDKLGLQHLRSRTWYVQATCATQ  174 (192)
T ss_dssp             GTTCEEEEEEECTTSTTC---------------------------------CCHHHHHHHTTGGGCSSCCEEEEECBTTT
T ss_pred             cCCCeEEEEEECCCCCCC---------------------------------CCHHHHHHHhCcccccCCceEEEECcCCC
Confidence            468999999999999653                                 11111111 111   02345699999999


Q ss_pred             CccHHHHHHHHHHHH
Q psy1524         296 NTNITQVFKELLVQA  310 (592)
Q Consensus       296 g~gVeeLf~~Li~~i  310 (592)
                      |.||+++|+.+++.+
T Consensus       175 g~gi~~l~~~l~~~i  189 (192)
T 2b6h_A          175 GTGLYDGLDWLSHEL  189 (192)
T ss_dssp             TBTHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHH
Confidence            999999999999876

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=4.3e-24  Score=200.99  Aligned_cols=162  Identities=19%  Similarity=0.262  Sum_probs=122.1

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||+++|+++.+ ..+.+|++ .....+.+++  +.+.+|||+|+                   
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~-------------------   72 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG-FNVETLSYKN--LKLNVWDLGGQ-------------------   72 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT-CCEEEEEETT--EEEEEEEEC---------------------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc-cceEEEEECC--EEEEEEECCCC-------------------
Confidence            4569999999999999999999998877 45566665 2334556665  66777999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +++..++..++.++|++|+|||++++.+|+.+..|+..+.....
T Consensus        73 ------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~  116 (183)
T 1moz_A           73 ------------------------------------TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE  116 (183)
T ss_dssp             --------------------------------------CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST
T ss_pred             ------------------------------------HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChh
Confidence                                                44555566678899999999999999999999999888766433


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh----cCCCeEEEcccCC
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV----DWENGFVEASAKD  295 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~----~~~~~~~EvSAkt  295 (592)
                      ..++|+++|+||+|+.+.                                 ...++.......    ....++++|||++
T Consensus       117 ~~~~piilv~nK~Dl~~~---------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~  163 (183)
T 1moz_A          117 LQDAALLVFANKQDQPGA---------------------------------LSASEVSKELNLVELKDRSWSIVASSAIK  163 (183)
T ss_dssp             TSSCEEEEEEECTTSTTC---------------------------------CCHHHHHHHTTTTTCCSSCEEEEEEBGGG
T ss_pred             hCCCeEEEEEECCCCCCC---------------------------------CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence            568999999999999753                                 122222222211    1234799999999


Q ss_pred             CccHHHHHHHHHHHHHHh
Q psy1524         296 NTNITQVFKELLVQAKVK  313 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~~~  313 (592)
                      |.||+++|+++++.+..+
T Consensus       164 ~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          164 GEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             TBTHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHhc
Confidence            999999999999988543

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.90  E-value=1.1e-24  Score=207.18  Aligned_cols=162  Identities=15%  Similarity=0.304  Sum_probs=117.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcC--CCCCCccCcee-eeEEEEEee---CCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYN--TFSPKYKRTIE-EMHHEDFSM---NGVHLKLDILDTSGEQSGKGLKCGAVLWGP  135 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~--~f~~~~~~Tt~-d~~~~~v~v---dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~  135 (592)
                      .+||+|+|++|||||||+++|++.  .+...+.+|++ ++....+.+   ++..+.+.+|||+|+               
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------   66 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGR---------------   66 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSH---------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCC---------------
Confidence            479999999999999999999984  56666778876 554444443   345778899999999               


Q ss_pred             CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc-CCHHHHHHHHHHH
Q psy1524         136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP-NSFEEIRLIRDHI  214 (592)
Q Consensus       136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~-~Sfe~l~~~l~~L  214 (592)
                                                              ++|..+...+++++|++++|||++++ .+|+.+..|+..+
T Consensus        67 ----------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~  106 (184)
T 2zej_A           67 ----------------------------------------EEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNI  106 (184)
T ss_dssp             ----------------------------------------HHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHH
T ss_pred             ----------------------------------------HHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHH
Confidence                                                    77777888889999999999999998 5899999999988


Q ss_pred             HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCC---hHHHHHHHhhcCCCe----
Q psy1524         215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP---YDTTESVVQVDWENG----  287 (592)
Q Consensus       215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs---~ee~~~la~~~~~~~----  287 (592)
                      ...  ..++|+|+|+||+|+.+.                               +.++   .+.+..+++ ..+++    
T Consensus       107 ~~~--~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~-~~~~~~~~~  152 (184)
T 2zej_A          107 KAR--ASSSPVILVGTHLDVSDE-------------------------------KQRKACMSKITKELLN-KRGFPAIRD  152 (184)
T ss_dssp             HHH--CTTCEEEEEEECGGGCCH-------------------------------HHHHHHHHHHHHHTTT-CTTSCEEEE
T ss_pred             Hhh--CCCCcEEEEEECCCcccc-------------------------------hhhHHHHHHHHHHHHH-hcCCcchhh
Confidence            764  357899999999999754                               1111   233444544 33444    


Q ss_pred             EEEcccCCCc-cHHHHHHHHHHHHHH
Q psy1524         288 FVEASAKDNT-NITQVFKELLVQAKV  312 (592)
Q Consensus       288 ~~EvSAktg~-gVeeLf~~Li~~i~~  312 (592)
                      |++|||++|. +++++++.+++.+..
T Consensus       153 ~~~~Sa~~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          153 YHFVNATEESDALAKLRKTIINESLN  178 (184)
T ss_dssp             EEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred             eEEEecccCchhHHHHHHHHHHHHhc
Confidence            9999999996 999999999988754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.90  E-value=7.3e-24  Score=205.52  Aligned_cols=192  Identities=16%  Similarity=0.167  Sum_probs=120.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCe-EEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGV-HLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~-~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ...+||+|+|++|||||||+++|+++.+...+.+++.+...  +.+++. .+.++||||+|+                  
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~------------------   64 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGH------------------   64 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCC------------------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCC------------------
Confidence            45689999999999999999999999998887766555443  566644 578888999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhH-HHHHhhhcCCcEEEEEeCCCcC-CHHHHHHHHHHHHH
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPA-MRALSISSADAFILVYAIDDPN-SFEEIRLIRDHIFE  216 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-l~~~~~~~AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~  216 (592)
                                                           ++|.. ++..+++.+|++|+|||+++.. ++..+..++..+..
T Consensus        65 -------------------------------------~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~  107 (214)
T 2fh5_B           65 -------------------------------------ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLI  107 (214)
T ss_dssp             -------------------------------------HHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------hhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHh
Confidence                                                 77777 7888899999999999999853 45555554444332


Q ss_pred             h--hcCCCCCEEEEEeCCCCcccccccccCCCCcccccC---CCC-CccccccCCCCCCCCChHHHHHHHhhcC--CCeE
Q psy1524         217 T--KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLS---GLP-DSVCAHQISGTPDQVPYDTTESVVQVDW--ENGF  288 (592)
Q Consensus       217 ~--~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~---~~~-~~~~~~~~~~~~r~Vs~ee~~~la~~~~--~~~~  288 (592)
                      .  ....++|++||+||+|+...... ......+...+.   ..+ ...+........+.+..+++..++....  .+.|
T Consensus       108 ~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (214)
T 2fh5_B          108 DSMALKNSPSLLIACNKQDIAMAKSA-KLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEF  186 (214)
T ss_dssp             HHHTSTTCCEEEEEEECTTSTTCCCH-HHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEE
T ss_pred             hhhhcccCCCEEEEEECCCCCCcccH-HHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEE
Confidence            2  12457899999999999765210 000000000000   000 0000011111112233333334433233  6789


Q ss_pred             EEcccCCC------ccHHHHHHHHHHH
Q psy1524         289 VEASAKDN------TNITQVFKELLVQ  309 (592)
Q Consensus       289 ~EvSAktg------~gVeeLf~~Li~~  309 (592)
                      +||||++|      .||+++|++|.+.
T Consensus       187 ~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          187 LECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             EECBCC-------CCBCHHHHHHHHHH
T ss_pred             EEeeccCCCccccccChHHHHHHHHHh
Confidence            99999999      9999999999875

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.90  E-value=5.4e-23  Score=197.39  Aligned_cols=165  Identities=31%  Similarity=0.469  Sum_probs=140.8

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ..+..++|+|+|++|||||||+++|++..+...+.+|++ ++....+.+++..+.+++|||+|+                
T Consensus        25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~----------------   88 (191)
T 1oix_A           25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL----------------   88 (191)
T ss_dssp             CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSC----------------
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCC----------------
Confidence            346679999999999999999999999998888888887 667788889999999999999998                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             +++..+...++..++++++|||+++..+|+++..|+..+..
T Consensus        89 ---------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~  129 (191)
T 1oix_A           89 ---------------------------------------ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD  129 (191)
T ss_dssp             ---------------------------------------CSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             ---------------------------------------cchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence                                                   55566667778899999999999999999999888887765


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      . ...+.|+++|+||+|+.+.                               +.+..+++..++. ...+.++++||+++
T Consensus       130 ~-~~~~~~i~~v~nK~Dl~~~-------------------------------~~~~~~~a~~l~~-~~~~~~ld~Sald~  176 (191)
T 1oix_A          130 H-ADSNIVIMLVGNKSDLRHL-------------------------------RAVPTDEARAFAE-KNGLSFIETSALDS  176 (191)
T ss_dssp             H-SCTTCEEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECCTTTC
T ss_pred             h-cCCCCcEEEEEECcccccc-------------------------------cccCHHHHHHHHH-HcCCEEEEEeCCCC
Confidence            4 3457899999999999765                               4556778888877 45678999999999


Q ss_pred             ccHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQA  310 (592)
Q Consensus       297 ~gVeeLf~~Li~~i  310 (592)
                      .|++++|+.+.+.+
T Consensus       177 ~~v~~l~~~l~~~i  190 (191)
T 1oix_A          177 TNVEAAFQTILTEI  190 (191)
T ss_dssp             TTHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998865

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.90  E-value=4.9e-24  Score=204.75  Aligned_cols=170  Identities=17%  Similarity=0.281  Sum_probs=117.5

Q ss_pred             CCCCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEE--EEee-CCeEEEEEEEeCCCCCCCCccccccc
Q psy1524          56 SEGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHE--DFSM-NGVHLKLDILDTSGEQSGKGLKCGAV  131 (592)
Q Consensus        56 ~~~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~--~v~v-dg~~v~L~I~DT~G~~~~~~~~~~~~  131 (592)
                      .....+.+||+|+|++|||||||++++.+. +...  +|+. +....  ...+ ++..+.++||||+|+           
T Consensus        14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~-----------   79 (196)
T 3llu_A           14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ-----------   79 (196)
T ss_dssp             ------CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSS-----------
T ss_pred             CcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCC-----------
Confidence            345567899999999999999999988764 3322  2222 22212  2223 366788899999999           


Q ss_pred             ccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHH---HHhhhcCCcEEEEEeCCCc--CCHHH
Q psy1524         132 LWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR---ALSISSADAFILVYAIDDP--NSFEE  206 (592)
Q Consensus       132 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~---~~~~~~AD~iIlVyDvsd~--~Sfe~  206 (592)
                                                                  ++|..+.   ..+++++|++|+|||+++.  +++..
T Consensus        80 --------------------------------------------~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  115 (196)
T 3llu_A           80 --------------------------------------------MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTR  115 (196)
T ss_dssp             --------------------------------------------CCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHH
T ss_pred             --------------------------------------------HHHHhhhhhcccccccCCEEEEEEECCCchHHHHHH
Confidence                                                        6666665   7889999999999999997  44455


Q ss_pred             HHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh---c
Q psy1524         207 IRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV---D  283 (592)
Q Consensus       207 l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~---~  283 (592)
                      +..|+..+..  ...++|+|||+||+|+..+....                        ...+.++.+++..+++.   .
T Consensus       116 ~~~~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~------------------------~~~~~v~~~~~~~~~~~~~~~  169 (196)
T 3llu_A          116 LHITVSKAYK--VNPDMNFEVFIHKVDGLSDDHKI------------------------ETQRDIHQRANDDLADAGLEK  169 (196)
T ss_dssp             HHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHH------------------------HHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHh--cCCCCcEEEEEeccccCchhhhh------------------------HHHhHHHHHHHHHHHHhhhhc
Confidence            5555555433  34689999999999987531100                        00134555666667663   3


Q ss_pred             CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         284 WENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       284 ~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      .++.|++|||++ .||+++|+.+++.+
T Consensus       170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          170 LHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             SCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             CCcceEEEEech-hhHHHHHHHHHHHh
Confidence            467899999999 99999999999865

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.90  E-value=1.8e-23  Score=198.68  Aligned_cols=162  Identities=17%  Similarity=0.247  Sum_probs=122.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||+++|+.+.+.. +.+|++ .....+.+++  +.+++|||+|+                   
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~Dt~G~-------------------   76 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG-VNLETLQYKN--ISFEVWDLGGQ-------------------   76 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT-CCEEEEEETT--EEEEEEEECCS-------------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc-eEEEEEEECC--EEEEEEECCCC-------------------
Confidence            356899999999999999999999887764 556665 3334455665  66777999998                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +++..++..+++++|++|+|||++++.+|+.+..|+..+.....
T Consensus        77 ------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~  120 (189)
T 2x77_A           77 ------------------------------------TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDE  120 (189)
T ss_dssp             ------------------------------------SSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCST
T ss_pred             ------------------------------------HhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhh
Confidence                                                44444445568899999999999999999999998888766544


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHH-HHh---hcCCCeEEEcccCC
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTES-VVQ---VDWENGFVEASAKD  295 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~-la~---~~~~~~~~EvSAkt  295 (592)
                      ..++|+++|+||+|+....                                 ..++... +..   .....++++|||++
T Consensus       121 ~~~~piilv~nK~Dl~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  167 (189)
T 2x77_A          121 LRKSLLLIFANKQDLPDAA---------------------------------SEAEIAEQLGVSSIMNRTWTIVKSSSKT  167 (189)
T ss_dssp             TTTCEEEEEEECTTSTTCC---------------------------------CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             cCCCeEEEEEECCCCcCCC---------------------------------CHHHHHHHhChhhccCCceEEEEccCCC
Confidence            4689999999999997541                                 1111111 110   12345799999999


Q ss_pred             CccHHHHHHHHHHHHHHh
Q psy1524         296 NTNITQVFKELLVQAKVK  313 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~~~  313 (592)
                      |.||+++|+.+++.+...
T Consensus       168 ~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          168 GDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             CTTHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHHHHhc
Confidence            999999999999988543

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.90  E-value=1.3e-24  Score=219.16  Aligned_cols=182  Identities=20%  Similarity=0.264  Sum_probs=127.1

Q ss_pred             CCCcceEEEEEcCC---------CCcHHHHHHHHHc---CCCCCCccCce-e-eeEEEEE--------------eeCCeE
Q psy1524          58 GHDTRHKVVVMGGP---------KVGKSSIIHRFLY---NTFSPKYKRTI-E-EMHHEDF--------------SMNGVH  109 (592)
Q Consensus        58 ~~~~~iKIvIvG~~---------nVGKSSLInrL~~---~~f~~~~~~Tt-~-d~~~~~v--------------~vdg~~  109 (592)
                      ..+..+||+|+|++         |||||||+++|++   +.+...+.+|+ + ++..+.+              .+++..
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   94 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE   94 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence            34677999999999         9999999999998   66777777776 2 3322222              246777


Q ss_pred             EEEEEEe------CCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHH
Q psy1524         110 LKLDILD------TSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA  183 (592)
Q Consensus       110 v~L~I~D------T~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~  183 (592)
                      +.++|||      |+|.+.....                                      .+.....++++++|..++.
T Consensus        95 ~~l~i~D~~~~~D~~~~~~~~~~--------------------------------------~~~~~~~~~g~e~~~~~~~  136 (255)
T 3c5h_A           95 CKMHIVEQTEFIDDQTFQPHRST--------------------------------------ALQPYIKRAAATKLASAEK  136 (255)
T ss_dssp             -CEEEEEECCCEETTTCSBTTGG--------------------------------------GCCCHHHHHTCSEEECTTC
T ss_pred             EEEEEEEcccccccccccccccc--------------------------------------ccccccccchhhhhhhhhh
Confidence            8888898      4444110000                                      0001112345566666666


Q ss_pred             Hhhh---------------------cCCcEEEEEeCCCc--CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccc
Q psy1524         184 LSIS---------------------SADAFILVYAIDDP--NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQ  240 (592)
Q Consensus       184 ~~~~---------------------~AD~iIlVyDvsd~--~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~  240 (592)
                      .++.                     +||++|+|||++++  .||+.+..|+..+.......++|+|||+||+|+...   
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~---  213 (255)
T 3c5h_A          137 LMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE---  213 (255)
T ss_dssp             BCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH---
T ss_pred             hhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc---
Confidence            6666                     89999999999998  999999999998876533467999999999999654   


Q ss_pred             cccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         241 VDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                                                  +.+  +++..++.....+.+++|||++|.||+++|+.|++.+
T Consensus       214 ----------------------------~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l  253 (255)
T 3c5h_A          214 ----------------------------RYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI  253 (255)
T ss_dssp             ----------------------------HHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ----------------------------HHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence                                        222  4666676644577899999999999999999999876

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.89  E-value=1.7e-22  Score=188.72  Aligned_cols=159  Identities=18%  Similarity=0.202  Sum_probs=111.1

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCce-eeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI-EEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt-~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ..++|+|+|++|||||||+++|++..+.....+++ .+.....+.+++  ..+++|||+|+.....              
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~--------------   65 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTA--------------   65 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSS--------------
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCC--------------
Confidence            35899999999999999999999876654334443 355556666776  4677799999821000              


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh--cCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS--SADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~--~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                         ......+...++.  ++|++++|+|+++.   +....|+..+.+ 
T Consensus        66 -----------------------------------~~~~~~~~~~~~~~~~~~~~i~v~D~~~~---~~~~~~~~~~~~-  106 (165)
T 2wji_A           66 -----------------------------------NSIDEIIARDYIINEKPDLVVNIVDATAL---ERNLYLTLQLME-  106 (165)
T ss_dssp             -----------------------------------SSHHHHHHHHHHHHHCCSEEEEEEETTCH---HHHHHHHHHHHH-
T ss_pred             -----------------------------------cchhHHHHHHHHhcCCCCEEEEEecCCch---hHhHHHHHHHHh-
Confidence                                               0011234455554  89999999999874   455557766654 


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                         .++|+|+|+||+|+...                               +.+.. ++..+++ ..+.++++|||++|.
T Consensus       107 ---~~~p~ilv~nK~Dl~~~-------------------------------~~~~~-~~~~~~~-~~~~~~~~~SA~~~~  150 (165)
T 2wji_A          107 ---MGANLLLALNKMDLAKS-------------------------------LGIEI-DVDKLEK-ILGVKVVPLSAAKKM  150 (165)
T ss_dssp             ---TTCCEEEEEECHHHHHH-------------------------------TTCCC-CHHHHHH-HHTSCEEECBGGGTB
T ss_pred             ---cCCCEEEEEEchHhccc-------------------------------cChhh-HHHHHHH-HhCCCEEEEEcCCCC
Confidence               36899999999998754                               22332 2455555 345789999999999


Q ss_pred             cHHHHHHHHHHHH
Q psy1524         298 NITQVFKELLVQA  310 (592)
Q Consensus       298 gVeeLf~~Li~~i  310 (592)
                      ||+++|+.+++.+
T Consensus       151 ~v~~l~~~l~~~~  163 (165)
T 2wji_A          151 GIEELKKAISIAV  163 (165)
T ss_dssp             SHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998765

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.88  E-value=3.5e-22  Score=186.72  Aligned_cols=159  Identities=24%  Similarity=0.372  Sum_probs=113.8

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ....++|+|+|++|||||||+++|+++.+...+.+++. +.....+.+++..+  .||||+|+                 
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~Dt~G~-----------------   65 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKI--TFLDTPGH-----------------   65 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEE--EESCCCSS-----------------
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceE--EEEECCCC-----------------
Confidence            35678999999999999999999999988876666554 55555667777654  56999998                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            ++|..++..++..+|++|+|||+++......... +..+   
T Consensus        66 --------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-l~~~---  103 (178)
T 2lkc_A           66 --------------------------------------EAFTTMRARGAQVTDIVILVVAADDGVMPQTVEA-INHA---  103 (178)
T ss_dssp             --------------------------------------SSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHH-HHHH---
T ss_pred             --------------------------------------HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHH-HHHH---
Confidence                                                  3344444455788999999999998654443322 2222   


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh------cC--CCeEE
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV------DW--ENGFV  289 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~------~~--~~~~~  289 (592)
                       ...++|+++|+||+|+....                                  .++.......      .+  ..+++
T Consensus       104 -~~~~~p~ilv~nK~Dl~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  148 (178)
T 2lkc_A          104 -KAANVPIIVAINKMDKPEAN----------------------------------PDRVMQELMEYNLVPEEWGGDTIFC  148 (178)
T ss_dssp             -GGGSCCEEEEEETTTSSCSC----------------------------------HHHHHHHHTTTTCCBTTTTSSEEEE
T ss_pred             -HhCCCCEEEEEECccCCcCC----------------------------------HHHHHHHHHhcCcChhHcCCcccEE
Confidence             23478999999999997531                                  1111111110      11  25799


Q ss_pred             EcccCCCccHHHHHHHHHHHHHHh
Q psy1524         290 EASAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       290 EvSAktg~gVeeLf~~Li~~i~~~  313 (592)
                      +|||++|.||+++|+.|++.+...
T Consensus       149 ~~Sa~~~~gv~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          149 KLSAKTKEGLDHLLEMILLVSEME  172 (178)
T ss_dssp             ECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred             EEecCCCCCHHHHHHHHHHhhhhh
Confidence            999999999999999999988554

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.87  E-value=3.1e-22  Score=188.88  Aligned_cols=160  Identities=20%  Similarity=0.307  Sum_probs=115.7

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ..+||+|+|++|||||||+|+|++..+  ...+.+++.+.....+.+++..  +.+|||+|+.....             
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~-------------   67 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASD-------------   67 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSS-------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchh-------------
Confidence            347999999999999999999998754  4556667778888888888865  56799999821000             


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                      ..+.                                 ..+.. ...+++.+|++|+|||++++.+++. ..|+..+.+. 
T Consensus        68 ~~~~---------------------------------~~~~~-~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~-  111 (172)
T 2gj8_A           68 EVER---------------------------------IGIER-AWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIAR-  111 (172)
T ss_dssp             HHHH---------------------------------HHHHH-HHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHH-
T ss_pred             HHHH---------------------------------HHHHH-HHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHh-
Confidence            0000                                 00111 1235789999999999999998874 4677777664 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      ...++|+|+|+||+|+.....                                      .+++ ....++++|||++|.|
T Consensus       112 ~~~~~p~ilv~NK~Dl~~~~~--------------------------------------~~~~-~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A          112 LPAKLPITVVRNKADITGETL--------------------------------------GMSE-VNGHALIRLSARTGEG  152 (172)
T ss_dssp             SCTTCCEEEEEECHHHHCCCC--------------------------------------EEEE-ETTEEEEECCTTTCTT
T ss_pred             cccCCCEEEEEECccCCcchh--------------------------------------hhhh-ccCCceEEEeCCCCCC
Confidence            345799999999999864300                                      0111 2345799999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQA  310 (592)
Q Consensus       299 VeeLf~~Li~~i  310 (592)
                      |+++|+.+.+.+
T Consensus       153 v~~l~~~l~~~~  164 (172)
T 2gj8_A          153 VDVLRNHLKQSM  164 (172)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998876

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.87  E-value=4.9e-22  Score=206.01  Aligned_cols=164  Identities=17%  Similarity=0.289  Sum_probs=126.3

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcC--CCCC-CccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYN--TFSP-KYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~--~f~~-~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ..+||+|+|++|||||||+++|+++  .+.. .+.+|++ .....+.+++ .+.++||||+|+                 
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~-~~~~~~~~~~-~~~l~i~Dt~G~-----------------   62 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID-VEHSHLRFLG-NMTLNLWDCGGQ-----------------   62 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCS-EEEEEEEETT-TEEEEEEEECCS-----------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccc-eEEEEEEeCC-ceEEEEEECCCc-----------------
Confidence            3589999999999999999999987  3333 3444444 3334455544 578889999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcch-----hHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHH
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEF-----PAMRALSISSADAFILVYAIDDPNSFEEIRLIRD  212 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-----~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~  212 (592)
                                                            +.|     ..+...+++++|++|+|||++++.+|+++..|..
T Consensus        63 --------------------------------------~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~  104 (307)
T 3r7w_A           63 --------------------------------------DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAK  104 (307)
T ss_dssp             --------------------------------------HHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHH
T ss_pred             --------------------------------------HHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHH
Confidence                                                  444     5677888999999999999999999999988766


Q ss_pred             HHHHhh-cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCC----CChHHHHHHHhhcC--C
Q psy1524         213 HIFETK-ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQ----VPYDTTESVVQVDW--E  285 (592)
Q Consensus       213 ~L~~~~-~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~----Vs~ee~~~la~~~~--~  285 (592)
                      .+.... ..+++|+++|+||+|+...+.                             +.    +..+++..+++...  .
T Consensus       105 ~l~~l~~~~~~~piilv~NK~Dl~~~~~-----------------------------r~~~~~v~~~~~~~~~~~~g~~~  155 (307)
T 3r7w_A          105 ALKQLRKYSPDAKIFVLLHKMDLVQLDK-----------------------------REELFQIMMKNLSETSSEFGFPN  155 (307)
T ss_dssp             HHHHHHHHCTTCEEEEEEECGGGSCHHH-----------------------------HHHHHHHHHHHHHHHHHTTTCCS
T ss_pred             HHHHHHHhCCCCeEEEEEecccccchhh-----------------------------hhHHHHHHHHHHHHHHHHcCCCC
Confidence            665532 246799999999999986311                             22    45567777877443  3


Q ss_pred             CeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524         286 NGFVEASAKDNTNITQVFKELLVQAK  311 (592)
Q Consensus       286 ~~~~EvSAktg~gVeeLf~~Li~~i~  311 (592)
                      +++++|||++ .|+.++|..+++.+.
T Consensus       156 ~~~~~tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          156 LIGFPTSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             CEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred             eEEEEeeecC-ChHHHHHHHHHHHHc
Confidence            7899999999 899999999887653

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.87  E-value=3.2e-21  Score=189.90  Aligned_cols=170  Identities=17%  Similarity=0.174  Sum_probs=115.5

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ....+||+|+|++|||||||+|+|+++.+. ..+..++.+.....+..++  +.+.||||+|+.+...            
T Consensus        26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~------------   91 (228)
T 2qu8_A           26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAF------------   91 (228)
T ss_dssp             CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCG------------
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCccc------------
Confidence            356799999999999999999999988774 2333444455555555555  5667799999921100            


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcc----hhHHHHHhhhcCCcEEEEEeCCCcCCHHH--HHHHH
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNE----FPAMRALSISSADAFILVYAIDDPNSFEE--IRLIR  211 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~--l~~~l  211 (592)
                                                           .+.    +..+. .++..+|++|+|||++++.+|..  ...|+
T Consensus        92 -------------------------------------~~~~~~~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~  133 (228)
T 2qu8_A           92 -------------------------------------ENRNTIEMTTIT-ALAHINGVILFIIDISEQCGLTIKEQINLF  133 (228)
T ss_dssp             -------------------------------------GGCCHHHHHHHH-HHHTSSEEEEEEEETTCTTSSCHHHHHHHH
T ss_pred             -------------------------------------chhhhHHHHHHH-HhhccccEEEEEEecccccCcchHHHHHHH
Confidence                                                 011    23332 34778999999999999988752  23344


Q ss_pred             HHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChH---HHHHHHhhcCC--C
Q psy1524         212 DHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYD---TTESVVQVDWE--N  286 (592)
Q Consensus       212 ~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~e---e~~~la~~~~~--~  286 (592)
                      ..+...  ..++|+|+|+||+|+...                               +.+..+   .+..++. ..+  .
T Consensus       134 ~~l~~~--~~~~piilv~nK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~-~~~~~~  179 (228)
T 2qu8_A          134 YSIKSV--FSNKSIVIGFNKIDKCNM-------------------------------DSLSIDNKLLIKQILD-NVKNPI  179 (228)
T ss_dssp             HHHHTC--C-CCCEEEEEECGGGCC---------------------------------CCCHHHHHHHHHHHH-HCCSCE
T ss_pred             HHHHHh--hcCCcEEEEEeCcccCCc-------------------------------hhhHHHHHHHHHHHHH-hcCCCc
Confidence            444332  247899999999999765                               344443   3444444 233  6


Q ss_pred             eEEEcccCCCccHHHHHHHHHHHHHHhc
Q psy1524         287 GFVEASAKDNTNITQVFKELLVQAKVKY  314 (592)
Q Consensus       287 ~~~EvSAktg~gVeeLf~~Li~~i~~~~  314 (592)
                      .+++|||++|.||+++|+.|++.+....
T Consensus       180 ~~~~~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          180 KFSSFSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             eEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999986554

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.87  E-value=1.1e-21  Score=205.33  Aligned_cols=160  Identities=14%  Similarity=0.199  Sum_probs=120.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||+++|+++.+...+ +|+. .....+..++  +.++||||+|+                   
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~-~~~~~~~~~~--~~l~i~Dt~G~-------------------  219 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG-FNVETVEYKN--ISFTVWDVGGQ-------------------  219 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETT-EEEEEEEETT--EEEEEEECC---------------------
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccc-eEEEEEecCc--EEEEEEECCCC-------------------
Confidence            45689999999999999999999988876543 4554 2233344444  67788999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +.|..++..+++.+|++|+|||++++.+|..+..++..+.....
T Consensus       220 ------------------------------------~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~  263 (329)
T 3o47_A          220 ------------------------------------DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE  263 (329)
T ss_dssp             ---------------------------------------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGG
T ss_pred             ------------------------------------HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhc
Confidence                                                77888888999999999999999999999999998888876545


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHH-HHh---hcCCCeEEEcccCC
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTES-VVQ---VDWENGFVEASAKD  295 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~-la~---~~~~~~~~EvSAkt  295 (592)
                      ..++|+|||+||+|+.+..                                 ..++... +..   .....++++|||++
T Consensus       264 ~~~~piilV~NK~Dl~~~~---------------------------------~~~~i~~~~~~~~~~~~~~~~~~vSAk~  310 (329)
T 3o47_A          264 LRDAVLLVFANKQDLPNAM---------------------------------NAAEITDKLGLHSLRHRNWYIQATCATS  310 (329)
T ss_dssp             GTTCEEEEEEECTTSTTCC---------------------------------CHHHHHHHHTCTTCCSSCEEEEECBTTT
T ss_pred             cCCCeEEEEEECccCCccc---------------------------------CHHHHHHHhchhhhhcCCCEEEEEECCC
Confidence            5689999999999997541                                 1122211 111   12345799999999


Q ss_pred             CccHHHHHHHHHHHHH
Q psy1524         296 NTNITQVFKELLVQAK  311 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~  311 (592)
                      |.||+++|+.|++.+.
T Consensus       311 g~gi~el~~~l~~~l~  326 (329)
T 3o47_A          311 GDGLYEGLDWLSNQLR  326 (329)
T ss_dssp             TBTHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            9999999999999874

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.86  E-value=6.7e-22  Score=186.77  Aligned_cols=167  Identities=16%  Similarity=0.147  Sum_probs=120.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +||+|+|++|||||||+++|++..+...+.+++. +..  .+.++    .+.+|||||.....                 
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~-----------------   58 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMM-----------------   58 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCT-----------------
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccc-----------------
Confidence            6999999999999999999999988766666554 222  22333    46679999972100                 


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhc-CCcEEEEEeCCCcCCHHHH-HHHHHH------
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISS-ADAFILVYAIDDPNSFEEI-RLIRDH------  213 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~-AD~iIlVyDvsd~~Sfe~l-~~~l~~------  213 (592)
                                                 ....+.++.+..+...+++. ++++++|||+.|..+|.++ ..|...      
T Consensus        59 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~  111 (190)
T 2cxx_A           59 ---------------------------GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPID  111 (190)
T ss_dssp             ---------------------------TSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHH
T ss_pred             ---------------------------cCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHH
Confidence                                       01112236788888888888 9999999999999999887 455432      


Q ss_pred             --HHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCC------
Q psy1524         214 --IFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWE------  285 (592)
Q Consensus       214 --L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~------  285 (592)
                        +.......++|+++|+||+|+...                               +   .+++..+++....      
T Consensus       112 ~~~~~~~~~~~~piilv~nK~Dl~~~-------------------------------~---~~~~~~~~~~~~~~~~~~~  157 (190)
T 2cxx_A          112 VEFYQFLRELDIPTIVAVNKLDKIKN-------------------------------V---QEVINFLAEKFEVPLSEID  157 (190)
T ss_dssp             HHHHHHHHHTTCCEEEEEECGGGCSC-------------------------------H---HHHHHHHHHHHTCCGGGHH
T ss_pred             HHHHHHHHhcCCceEEEeehHhccCc-------------------------------H---HHHHHHHHHHhhhhhhccC
Confidence              222223357999999999999765                               1   3445555543221      


Q ss_pred             CeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524         286 NGFVEASAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       286 ~~~~EvSAktg~gVeeLf~~Li~~i~~~  313 (592)
                      ..+++|||++|.||+++|+.+++.+...
T Consensus       158 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~  185 (190)
T 2cxx_A          158 KVFIPISAKFGDNIERLKNRIFEVIRER  185 (190)
T ss_dssp             HHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             CcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence            2479999999999999999999988543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.86  E-value=2.4e-21  Score=184.23  Aligned_cols=167  Identities=14%  Similarity=0.222  Sum_probs=110.2

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ...++|+|+|++|||||||+|+|++..+...+.++.+ ......+.+++   .+.||||+|.......            
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~------------   85 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVS------------   85 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSC------------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccC------------
Confidence            4578999999999999999999998876655544443 12222233444   3667999997211000            


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcC---CcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSA---DAFILVYAIDDPNSFEEIRLIRDHIF  215 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~A---D~iIlVyDvsd~~Sfe~l~~~l~~L~  215 (592)
                                                       ...++.+..+...++..+   |++++|+|+++..++.... ++..+.
T Consensus        86 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~  131 (195)
T 1svi_A           86 ---------------------------------KSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLK  131 (195)
T ss_dssp             ---------------------------------HHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHH
T ss_pred             ---------------------------------HHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHH
Confidence                                             001256777888888887   9999999999998887754 223332


Q ss_pred             HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCC--hHHHHHHHhhcCCCeEEEccc
Q psy1524         216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP--YDTTESVVQVDWENGFVEASA  293 (592)
Q Consensus       216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs--~ee~~~la~~~~~~~~~EvSA  293 (592)
                      .    .+.|+++|+||+|+....                               .+.  .+++..........++++|||
T Consensus       132 ~----~~~p~i~v~nK~Dl~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa  176 (195)
T 1svi_A          132 Y----YGIPVIVIATKADKIPKG-------------------------------KWDKHAKVVRQTLNIDPEDELILFSS  176 (195)
T ss_dssp             H----TTCCEEEEEECGGGSCGG-------------------------------GHHHHHHHHHHHHTCCTTSEEEECCT
T ss_pred             H----cCCCEEEEEECcccCChH-------------------------------HHHHHHHHHHHHHcccCCCceEEEEc
Confidence            2    478999999999997651                               111  123333222234678999999


Q ss_pred             CCCccHHHHHHHHHHHH
Q psy1524         294 KDNTNITQVFKELLVQA  310 (592)
Q Consensus       294 ktg~gVeeLf~~Li~~i  310 (592)
                      ++|.||+++|+.+++.+
T Consensus       177 ~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          177 ETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TTCTTHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHh
Confidence            99999999999998876

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.86  E-value=5.4e-21  Score=175.42  Aligned_cols=157  Identities=15%  Similarity=0.221  Sum_probs=107.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      .||+|+|++|||||||+++|++..+.  ..+.+++.+.....+..++.  .+.||||+|+.....               
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~---------------   64 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDK---------------   64 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSS---------------
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccc---------------
Confidence            69999999999999999999988643  44555555777777777776  456799999821000               


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                       ....+......++..+|++|+|||+++..+.... .+...+..    
T Consensus        65 ---------------------------------~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~----  106 (161)
T 2dyk_A           65 ---------------------------------WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADY-EVAEYLRR----  106 (161)
T ss_dssp             ---------------------------------CCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHH-HHHHHHHH----
T ss_pred             ---------------------------------hHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHH-HHHHHHHh----
Confidence                                             0133455666788999999999999987665432 22222322    


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      .++|+++|+||+|+.+..                                   +++..+++ ....++++|||++|.||+
T Consensus       107 ~~~p~ilv~nK~Dl~~~~-----------------------------------~~~~~~~~-~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A          107 KGKPVILVATKVDDPKHE-----------------------------------LYLGPLYG-LGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             HTCCEEEEEECCCSGGGG-----------------------------------GGCGGGGG-GSSCSCEECBTTTTBSHH
T ss_pred             cCCCEEEEEECcccccch-----------------------------------HhHHHHHh-CCCCCeEEEecccCCChH
Confidence            368999999999997541                                   11223332 222269999999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         301 QVFKELLVQA  310 (592)
Q Consensus       301 eLf~~Li~~i  310 (592)
                      ++|+.+++.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.86  E-value=2.4e-21  Score=183.23  Aligned_cols=161  Identities=19%  Similarity=0.195  Sum_probs=116.3

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCc-eeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRT-IEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~T-t~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      +..+||+|+|++|||||||+++|++..+.....++ +.+.....+.+++  +.+.+|||+|+.....             
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~-------------   69 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTA-------------   69 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSS-------------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCcccc-------------
Confidence            46789999999999999999999987654333344 3366666777776  5667799999821000             


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh--cCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS--SADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~--~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                          ......+...++.  .+|++++|+|+++   ++....|+..+..
T Consensus        70 ------------------------------------~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~  110 (188)
T 2wjg_A           70 ------------------------------------NSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME  110 (188)
T ss_dssp             ------------------------------------SSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT
T ss_pred             ------------------------------------ccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh
Confidence                                                0111234555554  4999999999875   6677777777654


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                          .++|+|+|+||+|+...                               +.+. .++..+++ ..+.++++|||++|
T Consensus       111 ----~~~piilv~nK~Dl~~~-------------------------------~~~~-~~~~~~~~-~~~~~~~~~Sa~~~  153 (188)
T 2wjg_A          111 ----MGANLLLALNKMDLAKS-------------------------------LGIE-IDVDKLEK-ILGVKVVPLSAAKK  153 (188)
T ss_dssp             ----TTCCEEEEEECHHHHHH-------------------------------TTCC-CCHHHHHH-HHTSCEEECBGGGT
T ss_pred             ----cCCCEEEEEEhhhcccc-------------------------------ccch-HHHHHHHH-HhCCCeEEEEecCC
Confidence                47899999999999765                               2222 23455554 34568999999999


Q ss_pred             ccHHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQAK  311 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~  311 (592)
                      .||+++|+.+++.+.
T Consensus       154 ~~v~~l~~~i~~~~~  168 (188)
T 2wjg_A          154 MGIEELKKAISIAVK  168 (188)
T ss_dssp             BSHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999999884

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.85  E-value=8.1e-21  Score=179.76  Aligned_cols=170  Identities=14%  Similarity=0.152  Sum_probs=114.6

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceee-eEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEE-MHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d-~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ....+||+|+|++|||||||+|+|++..+. .+.++.+. ........+.   .+.+|||+|.....             
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~-------------   82 (195)
T 3pqc_A           20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAK-------------   82 (195)
T ss_dssp             CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSC-------------
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCcccc-------------
Confidence            356789999999999999999999988643 22333321 1111222232   35579999972110             


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcC---CcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSA---DAFILVYAIDDPNSFEEIRLIRDHI  214 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~A---D~iIlVyDvsd~~Sfe~l~~~l~~L  214 (592)
                                                      .....++.+..+...++..+   |++++|+|+++..+..... +...+
T Consensus        83 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~  129 (195)
T 3pqc_A           83 --------------------------------VSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM-MVEWM  129 (195)
T ss_dssp             --------------------------------CCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHH
T ss_pred             --------------------------------CChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHH-HHHHH
Confidence                                            00111256777888888877   9999999998876654432 23333


Q ss_pred             HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524         215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK  294 (592)
Q Consensus       215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk  294 (592)
                      ...    ++|+++|+||+|+.+...                             +....+++..++......++++|||+
T Consensus       130 ~~~----~~p~i~v~nK~Dl~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~  176 (195)
T 3pqc_A          130 KSL----NIPFTIVLTKMDKVKMSE-----------------------------RAKKLEEHRKVFSKYGEYTIIPTSSV  176 (195)
T ss_dssp             HHT----TCCEEEEEECGGGSCGGG-----------------------------HHHHHHHHHHHHHSSCCSCEEECCTT
T ss_pred             HHc----CCCEEEEEEChhcCChHH-----------------------------HHHHHHHHHHHHhhcCCCceEEEecC
Confidence            332    689999999999975411                             22334555566554456789999999


Q ss_pred             CCccHHHHHHHHHHHHH
Q psy1524         295 DNTNITQVFKELLVQAK  311 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i~  311 (592)
                      +|.||+++|+++.+.+.
T Consensus       177 ~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          177 TGEGISELLDLISTLLK  193 (195)
T ss_dssp             TCTTHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHhh
Confidence            99999999999998873

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.85  E-value=8.3e-21  Score=196.97  Aligned_cols=211  Identities=17%  Similarity=0.136  Sum_probs=143.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeC-CeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMN-GVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vd-g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ...-.|+|+|.+|||||||+|+|++..+.  .....|+.+.....+..+ +  +.+.||||||+.+...           
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~-----------   74 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKK-----------   74 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCT-----------
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCcccc-----------
Confidence            55679999999999999999999988764  455566666666666665 5  4556699999922100           


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                        .....+.+......++..+|++|+|+|+++..++.+...|+..+..
T Consensus        75 ----------------------------------~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~  120 (308)
T 3iev_A           75 ----------------------------------SDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP  120 (308)
T ss_dssp             ----------------------------------TCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG
T ss_pred             ----------------------------------chhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh
Confidence                                              0001145566777789999999999999999999988877777655


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc-CCCeEEEcccCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD-WENGFVEASAKD  295 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~-~~~~~~EvSAkt  295 (592)
                          .++|+|+|+||+|+...                               +....+....+.+.. ....+++|||++
T Consensus       121 ----~~~pvilV~NK~Dl~~~-------------------------------~~~~~~~~~~l~~~~~~~~~i~~vSA~~  165 (308)
T 3iev_A          121 ----LNKPVIVVINKIDKIGP-------------------------------AKNVLPLIDEIHKKHPELTEIVPISALK  165 (308)
T ss_dssp             ----GCCCEEEEEECGGGSSS-------------------------------GGGGHHHHHHHHHHCTTCCCEEECBTTT
T ss_pred             ----cCCCEEEEEECccCCCC-------------------------------HHHHHHHHHHHHHhccCCCeEEEEeCCC
Confidence                36899999999999733                               122334555565543 346799999999


Q ss_pred             CccHHHHHHHHHHHHHHhcccChhhhhhcccC---------CCCCCCCCCCCCCCCcceeeEEeec
Q psy1524         296 NTNITQVFKELLVQAKVKYNLSPALRRRRRQS---------LPPVQHSPNPVPYDTTESVVQVDWE  352 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~~~~~~~~~~~~~~r~~---------~~~~~~s~~pVpydta~slas~d~~  352 (592)
                      |.||+++|+.+.+.+.......+.........         ......-...+||..+..+..++.+
T Consensus       166 g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~~~  231 (308)
T 3iev_A          166 GANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPG  231 (308)
T ss_dssp             TBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEEC
T ss_pred             CCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEEEc
Confidence            99999999999998854433222110000000         0001133567888887766655443

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.84  E-value=1.4e-21  Score=204.15  Aligned_cols=163  Identities=20%  Similarity=0.238  Sum_probs=119.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCC---CccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSP---KYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~---~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ||+++|++|||||||++++.++.+..   .+.+|++ +...    ++ ..+.++||||+|+                   
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQ-------------------   56 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQ-------------------   56 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSC-------------------
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCc-------------------
Confidence            79999999999999999988664432   3567776 3322    23 4588999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhH---HHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPA---MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                          ++|+.   ++..|+++|+++|+|||++++ .++.+..|...+..
T Consensus        57 ------------------------------------Erf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~   99 (331)
T 3r7w_B           57 ------------------------------------LNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEY   99 (331)
T ss_dssp             ------------------------------------SSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHH
T ss_pred             ------------------------------------hhccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHH
Confidence                                                77754   478899999999999999998 44444444333322


Q ss_pred             h-hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc---CCCeEEEcc
Q psy1524         217 T-KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD---WENGFVEAS  292 (592)
Q Consensus       217 ~-~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~---~~~~~~EvS  292 (592)
                      . ...+++|++|||||+||..++...                        ...|.|+.++++.+++..   .++.|+|||
T Consensus       100 ~~~~~~~ipillvgNK~DL~~~~~R~------------------------~~~R~V~~~~~~~la~~~~~~~~i~f~eTS  155 (331)
T 3r7w_B          100 AYKVNPSINIEVLIHKVDGLSEDFKV------------------------DAQRDIMQRTGEELLELGLDGVQVSFYLTS  155 (331)
T ss_dssp             HHHHCTTCEEEEECCCCCSSCSHHHH------------------------HHHHHHHHHHHHTTSSSSCSCCCEEEECCC
T ss_pred             HhhcCCCCcEEEEEECcccCchhhhh------------------------hHHHHhhHHHHHHHHhhcccccCceEEEec
Confidence            1 124689999999999997642100                        001456777888888742   578899999


Q ss_pred             cCCCccHHHHHHHHHHHHHH
Q psy1524         293 AKDNTNITQVFKELLVQAKV  312 (592)
Q Consensus       293 Aktg~gVeeLf~~Li~~i~~  312 (592)
                      |++ .||.++|..+++.+..
T Consensus       156 Akd-~nV~eAFs~iv~~li~  174 (331)
T 3r7w_B          156 IFD-HSIYEAFSRIVQKLIP  174 (331)
T ss_dssp             SSS-SHHHHHHHHHHTTSST
T ss_pred             cCC-CcHHHHHHHHHHHHHh
Confidence            998 5999999999987743

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.82  E-value=2.5e-20  Score=207.13  Aligned_cols=162  Identities=19%  Similarity=0.225  Sum_probs=117.2

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEE-------Eee--CCeEEEEEEEeCCCCCCCCccccc
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHED-------FSM--NGVHLKLDILDTSGEQSGKGLKCG  129 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~-------v~v--dg~~v~L~I~DT~G~~~~~~~~~~  129 (592)
                      ....+||+|+|++|||||||+++|++..+...+.+|++..+...       +.+  ++..+.+.||||+|+         
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~---------  108 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQ---------  108 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSC---------
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcH---------
Confidence            46779999999999999999999999999888888888433322       122  344678888999998         


Q ss_pred             ccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHH
Q psy1524         130 AVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL  209 (592)
Q Consensus       130 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~  209 (592)
                                                                    +.|..+...+++.+|++|+|||+++.   +.+..
T Consensus       109 ----------------------------------------------e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~  139 (535)
T 3dpu_A          109 ----------------------------------------------EIMHASHQFFMTRSSVYMLLLDSRTD---SNKHY  139 (535)
T ss_dssp             ----------------------------------------------CTTTTTCHHHHHSSEEEEEEECGGGG---GGHHH
T ss_pred             ----------------------------------------------HHHHHHHHHHccCCcEEEEEEeCCCc---hhHHH
Confidence                                                          67777778889999999999999865   56677


Q ss_pred             HHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEE
Q psy1524         210 IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFV  289 (592)
Q Consensus       210 ~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~  289 (592)
                      |+..+...  ..+.|+|+|+||+|+...                               +.+..+++..++. ..+.+++
T Consensus       140 ~~~~l~~~--~~~~pvilV~NK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~  185 (535)
T 3dpu_A          140 WLRHIEKY--GGKSPVIVVMNKIDENPS-------------------------------YNIEQKKINERFP-AIENRFH  185 (535)
T ss_dssp             HHHHHHHH--SSSCCEEEEECCTTTCTT-------------------------------CCCCHHHHHHHCG-GGTTCEE
T ss_pred             HHHHHHHh--CCCCCEEEEEECCCcccc-------------------------------cccCHHHHHHHHH-hcCCceE
Confidence            88888775  357999999999999765                               5566677777665 4456799


Q ss_pred             EcccCCCccHHHHHHHHHHHHHH
Q psy1524         290 EASAKDNTNITQVFKELLVQAKV  312 (592)
Q Consensus       290 EvSAktg~gVeeLf~~Li~~i~~  312 (592)
                      +|||++|.||+++|+.+++.+..
T Consensus       186 ~vSA~~g~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          186 RISCKNGDGVESIAKSLKSAVLH  208 (535)
T ss_dssp             ECCC-----CTTHHHHHHHHHTC
T ss_pred             EEecCcccCHHHHHHHHHHHHhc
Confidence            99999999999999999998854

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.82  E-value=7.5e-20  Score=198.42  Aligned_cols=171  Identities=20%  Similarity=0.261  Sum_probs=120.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      +..+||+|+|.+|||||||+|+|++..+  ...+.+|+.+.....+..++..  ++||||||+......           
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~-----------  239 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKV-----------  239 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTB-----------
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccc-----------
Confidence            4579999999999999999999998876  4566777777777778888865  566999998321100           


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHH-HhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA-LSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~-~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                        ....|.|..++. .+++.||++|+|||+++..++.+.. |+..+.+
T Consensus       240 ----------------------------------~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~-~~~~~~~  284 (436)
T 2hjg_A          240 ----------------------------------YETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR-IAGYAHE  284 (436)
T ss_dssp             ----------------------------------CCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH
T ss_pred             ----------------------------------cchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHH-HHHHHHH
Confidence                                              012266777665 3789999999999999999988863 5555543


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHH-HH---hhcCCCeEEEcc
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTES-VV---QVDWENGFVEAS  292 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~-la---~~~~~~~~~EvS  292 (592)
                          .++|+|+|+||+|+.+.                               +.++.++... +.   ......++++||
T Consensus       285 ----~~~~iiiv~NK~Dl~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~S  329 (436)
T 2hjg_A          285 ----AGKAVVIVVNKWDAVDK-------------------------------DESTMKEFEENIRDHFQFLDYAPILFMS  329 (436)
T ss_dssp             ----TTCEEEEEEECGGGSCC-------------------------------CTTHHHHHHHHHHHHCGGGTTSCEEECC
T ss_pred             ----cCCcEEEEEECccCCCc-------------------------------chHHHHHHHHHHHHhcccCCCCCEEEEe
Confidence                47899999999999865                               2333222221 11   123457899999


Q ss_pred             cCCCccHHHHHHHHHHHHHHh
Q psy1524         293 AKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       293 Aktg~gVeeLf~~Li~~i~~~  313 (592)
                      |++|.||+++|+.+.+.+...
T Consensus       330 A~tg~~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          330 ALTKKRIHTLMPAIIKASENH  350 (436)
T ss_dssp             TTTCTTGGGHHHHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHHHHHh
Confidence            999999999999999988654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.81  E-value=1e-19  Score=184.17  Aligned_cols=161  Identities=17%  Similarity=0.166  Sum_probs=113.2

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ...++|+|+|.+|||||||+|+|++..+. ..+..++.+.....+..++  +.+.||||||+......            
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~------------   68 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYS------------   68 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSS------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCC------------
Confidence            35689999999999999999999987654 3444445455555566555  56677999998210000            


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhh--hcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSI--SSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~--~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                           ..-..+...++  ..+|++|+|+|+++.++.   ..|+..+.+
T Consensus        69 -------------------------------------~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~  108 (258)
T 3a1s_A           69 -------------------------------------SIDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILE  108 (258)
T ss_dssp             -------------------------------------SHHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHT
T ss_pred             -------------------------------------CHHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHh
Confidence                                                 00112334444  589999999999986533   335555544


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                          .++|+|+|+||+|+...                               +.+.. ++..+++ ..++++++|||++|
T Consensus       109 ----~~~pvilv~NK~Dl~~~-------------------------------~~i~~-~~~~l~~-~lg~~vi~~SA~~g  151 (258)
T 3a1s_A          109 ----MEKKVILAMTAIDEAKK-------------------------------TGMKI-DRYELQK-HLGIPVVFTSSVTG  151 (258)
T ss_dssp             ----TTCCEEEEEECHHHHHH-------------------------------TTCCB-CHHHHHH-HHCSCEEECCTTTC
T ss_pred             ----cCCCEEEEEECcCCCCc-------------------------------cchHH-HHHHHHH-HcCCCEEEEEeeCC
Confidence                37899999999999765                               23332 2455554 44678999999999


Q ss_pred             ccHHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQAK  311 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~  311 (592)
                      .||+++|+.+++.+.
T Consensus       152 ~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          152 EGLEELKEKIVEYAQ  166 (258)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHhh
Confidence            999999999998763

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.81  E-value=8.4e-20  Score=186.51  Aligned_cols=158  Identities=17%  Similarity=0.181  Sum_probs=110.4

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCC-CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNT-FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~-f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ..++|+|+|++|||||||+|+|++.. +..++..++.+.....+  +. .+.++||||||+.....              
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~--~~-~~~l~l~DtpG~~~~~~--------------   64 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV--KK-NKDLEIQDLPGIYSMSP--------------   64 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC--TT-CTTEEEEECCCCSCSSC--------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE--ec-CCeEEEEECCCcCccCC--------------
Confidence            35799999999999999999999765 45666555555444433  33 45677799999811000              


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh--cCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS--SADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~--~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                        . .....+...|+.  .+|++|+|||+++.+   ....|...+.+ 
T Consensus        65 ----------------------------------~-~~~e~v~~~~~~~~~~d~vi~V~D~t~~e---~~~~~~~~l~~-  105 (272)
T 3b1v_A           65 ----------------------------------Y-SPEAKVARDYLLSQRADSILNVVDATNLE---RNLYLTTQLIE-  105 (272)
T ss_dssp             ----------------------------------S-SHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHH-
T ss_pred             ----------------------------------C-ChHHHHHHHHHhcCCCCEEEEEecCCchH---hHHHHHHHHHh-
Confidence                                              0 011235555665  699999999998754   33445555554 


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                         .++|+|+|+||+|+...                               +.+. .++..+++ ..++++++|||++|.
T Consensus       106 ---~~~p~ilv~NK~Dl~~~-------------------------------~~~~-~~~~~l~~-~lg~~vi~~SA~~g~  149 (272)
T 3b1v_A          106 ---TGIPVTIALNMIDVLDG-------------------------------QGKK-INVDKLSY-HLGVPVVATSALKQT  149 (272)
T ss_dssp             ---TCSCEEEEEECHHHHHH-------------------------------TTCC-CCHHHHHH-HHTSCEEECBTTTTB
T ss_pred             ---cCCCEEEEEEChhhCCc-------------------------------CCcH-HHHHHHHH-HcCCCEEEEEccCCC
Confidence               37899999999999765                               2222 23445554 346789999999999


Q ss_pred             cHHHHHHHHHHHH
Q psy1524         298 NITQVFKELLVQA  310 (592)
Q Consensus       298 gVeeLf~~Li~~i  310 (592)
                      ||+++|+.+++.+
T Consensus       150 gi~el~~~i~~~~  162 (272)
T 3b1v_A          150 GVDQVVKKAAHTT  162 (272)
T ss_dssp             SHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999998754

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.80  E-value=1.9e-19  Score=175.17  Aligned_cols=172  Identities=13%  Similarity=0.114  Sum_probs=112.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCC---CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNT---FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~---f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ...++|+|+|.+|||||||+|+|++..   ....+..++.+.....+.. .....+.||||||.......          
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~----------   95 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP-AAEPVAHLVDLPGYGYAEVP----------   95 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESC-TTSCSEEEEECCCCCSSCCC----------
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecC-CCCCcEEEEcCCCCCcccCC----------
Confidence            457899999999999999999999886   3344444544433333221 22345667999998321100          


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhc---CCcEEEEEeCCCcCCHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISS---ADAFILVYAIDDPNSFEEIRLIRDH  213 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~---AD~iIlVyDvsd~~Sfe~l~~~l~~  213 (592)
                                                         ...++.+..+...++..   +|++|+|+|+++..+... ..++..
T Consensus        96 -----------------------------------~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~  139 (223)
T 4dhe_A           96 -----------------------------------GAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEW  139 (223)
T ss_dssp             -----------------------------------STHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHH
T ss_pred             -----------------------------------hhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHH
Confidence                                               00125566677777777   667999999998665332 334444


Q ss_pred             HHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh------cCCCe
Q psy1524         214 IFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV------DWENG  287 (592)
Q Consensus       214 L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~------~~~~~  287 (592)
                      +..    .++|+|+|+||+|+......                             ....+........      ....+
T Consensus       140 l~~----~~~p~i~v~nK~Dl~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~~~~~~~  186 (223)
T 4dhe_A          140 FAP----TGKPIHSLLTKCDKLTRQES-----------------------------INALRATQKSLDAYRDAGYAGKLT  186 (223)
T ss_dssp             HGG----GCCCEEEEEECGGGSCHHHH-----------------------------HHHHHHHHHHHHHHHHHTCCSCEE
T ss_pred             HHh----cCCCEEEEEeccccCChhhH-----------------------------HHHHHHHHHHHHhhhhcccCCCCe
Confidence            433    47899999999999764110                             0001111222221      25678


Q ss_pred             EEEcccCCCccHHHHHHHHHHHHH
Q psy1524         288 FVEASAKDNTNITQVFKELLVQAK  311 (592)
Q Consensus       288 ~~EvSAktg~gVeeLf~~Li~~i~  311 (592)
                      +++|||++|.||+++|+.|.+.+.
T Consensus       187 ~~~~SA~~g~gv~~l~~~l~~~~~  210 (223)
T 4dhe_A          187 VQLFSALKRTGLDDAHALIESWLR  210 (223)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred             EEEeecCCCcCHHHHHHHHHHhcC
Confidence            999999999999999999998873

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.80  E-value=3e-19  Score=194.73  Aligned_cols=175  Identities=19%  Similarity=0.248  Sum_probs=125.5

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCC--CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNT--FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~--f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ....+||+++|.+|||||||+|+|++..  +...+.+|+.+.....+..++.  .++||||+|......           
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~-----------  258 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGK-----------  258 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTT-----------
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcc-----------
Confidence            4567999999999999999999999764  3466667777777777788886  456699999722110           


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHH-hhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRAL-SISSADAFILVYAIDDPNSFEEIRLIRDHIF  215 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~-~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~  215 (592)
                                                        ....+++|..++.. +++.||++|+|+|+++..+.. ...|+..+.
T Consensus       259 ----------------------------------~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~  303 (456)
T 4dcu_A          259 ----------------------------------VYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAH  303 (456)
T ss_dssp             ----------------------------------BCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHH
T ss_pred             ----------------------------------cchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHH
Confidence                                              01223778877765 789999999999999865533 334555454


Q ss_pred             HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc----CCCeEEEc
Q psy1524         216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD----WENGFVEA  291 (592)
Q Consensus       216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~----~~~~~~Ev  291 (592)
                      +    .++|+|+|+||+|+.+.                               +.++.+++...++..    ...++++|
T Consensus       304 ~----~~~~~ilv~NK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (456)
T 4dcu_A          304 E----AGKAVVIVVNKWDAVDK-------------------------------DESTMKEFEENIRDHFQFLDYAPILFM  348 (456)
T ss_dssp             H----TTCEEEEEEECGGGSCC-------------------------------CSSHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred             H----cCCCEEEEEEChhcCCC-------------------------------chHHHHHHHHHHHHhcccCCCCCEEEE
Confidence            4    46899999999999865                               445555555554433    25789999


Q ss_pred             ccCCCccHHHHHHHHHHHHHHhccc
Q psy1524         292 SAKDNTNITQVFKELLVQAKVKYNL  316 (592)
Q Consensus       292 SAktg~gVeeLf~~Li~~i~~~~~~  316 (592)
                      ||++|.||+++|+.+.+.+......
T Consensus       349 SA~~g~gv~~l~~~i~~~~~~~~~~  373 (456)
T 4dcu_A          349 SALTKKRIHTLMPAIIKASENHSLR  373 (456)
T ss_dssp             CTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred             cCCCCcCHHHHHHHHHHHHHHhccc
Confidence            9999999999999999988665443

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.80  E-value=5.2e-20  Score=178.87  Aligned_cols=145  Identities=14%  Similarity=0.206  Sum_probs=102.9

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCC---CccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSP---KYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP  135 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~---~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~  135 (592)
                      ....++|+|+|++|||||||+++|++..+..   .+.+++...        ...+.+.||||+|+               
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~Dt~G~---------------   65 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD--------YDGSGVTLVDFPGH---------------   65 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT--------GGGSSCEEEECCCC---------------
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE--------eeCceEEEEECCCc---------------
Confidence            3567899999999999999999999887754   344444311        13356777999999               


Q ss_pred             CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhc----CCcEEEEEeCC-CcCCHHHHHHH
Q psy1524         136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISS----ADAFILVYAID-DPNSFEEIRLI  210 (592)
Q Consensus       136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~----AD~iIlVyDvs-d~~Sfe~l~~~  210 (592)
                                                              +.+..++..++..    +|++|+|||++ ++.+|..+..|
T Consensus        66 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~  105 (218)
T 1nrj_B           66 ----------------------------------------VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEF  105 (218)
T ss_dssp             ----------------------------------------GGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHH
T ss_pred             ----------------------------------------HHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHH
Confidence                                                    7777777777777    89999999999 89999999999


Q ss_pred             HHHHHHhh---cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCC------hHHHHHHHh
Q psy1524         211 RDHIFETK---ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP------YDTTESVVQ  281 (592)
Q Consensus       211 l~~L~~~~---~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs------~ee~~~la~  281 (592)
                      +..+....   ...++|+++|+||+|+...                               +.+.      .+++..++.
T Consensus       106 ~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------------------------~~~~~~~~~l~~~~~~~~~  154 (218)
T 1nrj_B          106 LVDILSITESSCENGIDILIACNKSELFTA-------------------------------RPPSKIKDALESEIQKVIE  154 (218)
T ss_dssp             HHHHHHHHHHHSTTCCCEEEEEECTTSTTC-------------------------------CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccccccCCCCEEEEEEchHhccc-------------------------------CCHHHHHHHHHHHHHHHHH
Confidence            88877643   2368999999999999765                               2222      334445544


Q ss_pred             hcCCCeEEEcccCCCcc
Q psy1524         282 VDWENGFVEASAKDNTN  298 (592)
Q Consensus       282 ~~~~~~~~EvSAktg~g  298 (592)
                       .....|+++||++|.+
T Consensus       155 -~~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          155 -RRKKSLNEVERKINEE  170 (218)
T ss_dssp             -HHHHHHHC--------
T ss_pred             -HHhccccccccccccc
Confidence             3345789999999876

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.79  E-value=3.7e-19  Score=195.29  Aligned_cols=164  Identities=18%  Similarity=0.232  Sum_probs=100.2

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCC--CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNT--FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~--f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ..++|+|+|.+|||||||+|+|++..  +...+.+|+.+.....+.+++.  .+.||||+|+.+..             .
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~--~l~liDT~G~~~~~-------------~  296 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKT--MFRLTDTAGLREAG-------------E  296 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTE--EEEEEC----------------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCCCCcch-------------h
Confidence            45899999999999999999999875  4566777787888888888885  46669999982210             0


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                      ..+.+++.                                  ....++..+|++|+|||++++.++..+..+...+... 
T Consensus       297 ~ve~~gi~----------------------------------~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-  341 (476)
T 3gee_A          297 EIEHEGIR----------------------------------RSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH-  341 (476)
T ss_dssp             ---------------------------------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-
T ss_pred             HHHHHHHH----------------------------------HHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-
Confidence            01111111                                  1122578899999999999999987555444444443 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                        .++|+|+|+||+|+...                               +.+   ....+.+. ...++++|||++|.|
T Consensus       342 --~~~piIvV~NK~Dl~~~-------------------------------~~~---~~~~l~~~-~~~~~i~vSAktg~G  384 (476)
T 3gee_A          342 --PAAKFLTVANKLDRAAN-------------------------------ADA---LIRAIADG-TGTEVIGISALNGDG  384 (476)
T ss_dssp             --TTSEEEEEEECTTSCTT-------------------------------THH---HHHHHHHH-HTSCEEECBTTTTBS
T ss_pred             --CCCCEEEEEECcCCCCc-------------------------------cch---hHHHHHhc-CCCceEEEEECCCCC
Confidence              27899999999999765                               111   11233332 126799999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQAK  311 (592)
Q Consensus       299 VeeLf~~Li~~i~  311 (592)
                      |+++|+.+.+.+.
T Consensus       385 I~eL~~~i~~~~~  397 (476)
T 3gee_A          385 IDTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998873

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.79  E-value=8.7e-19  Score=181.47  Aligned_cols=165  Identities=19%  Similarity=0.201  Sum_probs=114.0

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .+..+|+|+|.+|||||||+|+|++..+.  .....|+.+.....+..++  ..+.||||||+.....            
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~------------   70 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMD------------   70 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCS------------
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhh------------
Confidence            45578999999999999999999988774  3444566655554444454  5566799999821000            


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHH-HHHHH
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIR-DHIFE  216 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l-~~L~~  216 (592)
                                                         ...+.+......+++.+|++|+|||++++.+...  .|+ ..+..
T Consensus        71 -----------------------------------~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~  113 (301)
T 1wf3_A           71 -----------------------------------ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED--ELVARALKP  113 (301)
T ss_dssp             -----------------------------------HHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGG
T ss_pred             -----------------------------------HHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHh
Confidence                                               0013355666778999999999999998876553  343 34433


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      .  ..++|+|+|+||+|+.....                              .+ .+.+..+   .....+++|||++|
T Consensus       114 ~--~~~~p~ilV~NK~Dl~~~~~------------------------------~~-~~~~~~~---~~~~~~~~iSA~~g  157 (301)
T 1wf3_A          114 L--VGKVPILLVGNKLDAAKYPE------------------------------EA-MKAYHEL---LPEAEPRMLSALDE  157 (301)
T ss_dssp             G--TTTSCEEEEEECGGGCSSHH------------------------------HH-HHHHHHT---STTSEEEECCTTCH
T ss_pred             h--cCCCCEEEEEECcccCCchH------------------------------HH-HHHHHHh---cCcCcEEEEeCCCC
Confidence            2  24789999999999975410                              00 1122222   22346899999999


Q ss_pred             ccHHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQAK  311 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~  311 (592)
                      .||+++|+.+.+.+.
T Consensus       158 ~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          158 RQVAELKADLLALMP  172 (301)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHhcc
Confidence            999999999987663

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.79  E-value=5.7e-19  Score=179.22  Aligned_cols=161  Identities=16%  Similarity=0.149  Sum_probs=112.3

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccC-ceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKR-TIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~-Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      +.++|+|+|++|||||||+|+|++..+.....+ ++.+.....+..++..  +.||||||+.+...              
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~--------------   65 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTA--------------   65 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCS--------------
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCcccccc--------------
Confidence            468999999999999999999998766433333 3446666777777755  56699999821000              


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhh--hcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSI--SSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~--~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                         ......+...++  .++|++|+|+|+++.   +....++..+.+.
T Consensus        66 -----------------------------------~~~~~~~~~~~~~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~  107 (271)
T 3k53_A           66 -----------------------------------HSIDELIARNFILDGNADVIVDIVDSTCL---MRNLFLTLELFEM  107 (271)
T ss_dssp             -----------------------------------SCHHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHT
T ss_pred             -----------------------------------CCHHHHHHHHhhhccCCcEEEEEecCCcc---hhhHHHHHHHHhc
Confidence                                               001112344455  689999999999875   3334455555443


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                         ..+|+++|+||+|+...                               +.+..+ ...+.+ ..++++++|||++|.
T Consensus       108 ---~~~p~ilv~NK~Dl~~~-------------------------------~~~~~~-~~~l~~-~lg~~~~~~Sa~~g~  151 (271)
T 3k53_A          108 ---EVKNIILVLNKFDLLKK-------------------------------KGAKID-IKKMRK-ELGVPVIPTNAKKGE  151 (271)
T ss_dssp             ---TCCSEEEEEECHHHHHH-------------------------------HTCCCC-HHHHHH-HHSSCEEECBGGGTB
T ss_pred             ---CCCCEEEEEEChhcCcc-------------------------------cccHHH-HHHHHH-HcCCcEEEEEeCCCC
Confidence               23899999999998765                               112211 344444 456789999999999


Q ss_pred             cHHHHHHHHHHHHH
Q psy1524         298 NITQVFKELLVQAK  311 (592)
Q Consensus       298 gVeeLf~~Li~~i~  311 (592)
                      ||+++|+.+.+.+.
T Consensus       152 gi~~l~~~i~~~~~  165 (271)
T 3k53_A          152 GVEELKRMIALMAE  165 (271)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998874

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.79  E-value=1.5e-19  Score=182.95  Aligned_cols=160  Identities=19%  Similarity=0.228  Sum_probs=110.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      .+|+|+|.+|||||||+|+|++..+. ..+.+++.+.....+.+++.  .+.||||||+.+.....              
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~--------------   65 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANA--------------   65 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC-----------------
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccc--------------
Confidence            48999999999999999999987543 44455555777788888886  55669999982110000              


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhh--hcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSI--SSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~--~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                     ........+...++  ..+|++|+|+|+++.+++..+   ...+.+   
T Consensus        66 -------------------------------~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l---~~~l~~---  108 (256)
T 3iby_A           66 -------------------------------EGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYL---TSQLFE---  108 (256)
T ss_dssp             ----------------------------------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHH---HHHHTT---
T ss_pred             -------------------------------cCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHH---HHHHHH---
Confidence                                           00011123445566  889999999999985544333   333322   


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                       .++|+|+|+||+|+...                               +.+.. ....+.+ ..++++++|||++|.||
T Consensus       109 -~~~pvilv~NK~Dl~~~-------------------------------~~~~~-~~~~l~~-~lg~~vi~~SA~~g~gi  154 (256)
T 3iby_A          109 -LGKPVVVALNMMDIAEH-------------------------------RGISI-DTEKLES-LLGCSVIPIQAHKNIGI  154 (256)
T ss_dssp             -SCSCEEEEEECHHHHHH-------------------------------TTCEE-CHHHHHH-HHCSCEEECBGGGTBSH
T ss_pred             -cCCCEEEEEEChhcCCc-------------------------------CCcHH-HHHHHHH-HcCCCEEEEECCCCCCH
Confidence             37899999999999765                               12211 1233443 44678999999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         300 TQVFKELLVQ  309 (592)
Q Consensus       300 eeLf~~Li~~  309 (592)
                      +++|+.+.+.
T Consensus       155 ~el~~~i~~~  164 (256)
T 3iby_A          155 PALQQSLLHC  164 (256)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhh
Confidence            9999998764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.78  E-value=3.2e-19  Score=181.94  Aligned_cols=163  Identities=13%  Similarity=0.180  Sum_probs=110.6

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ..++|+|+|.+|||||||+|+|++..+. ..+..++.+.....+..++..+  .||||||+.+.....            
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~--~liDtpG~~~~~~~~------------   67 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQV--TLVDLPGTYSLTTIS------------   67 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEE--EEEECCCCSCSCC--------------
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCce--EEEECcCCCcccccc------------
Confidence            4689999999999999999999987654 3444555577777777777555  559999982210000            


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHh--hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALS--ISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~--~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                       .....-..+...+  ...+|++|+|+|+++.++   ...+...+.+.
T Consensus        68 ---------------------------------~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~---~~~~~~~l~~~  111 (274)
T 3i8s_A           68 ---------------------------------SQTSLDEQIACHYILSGDADLLINVVDASNLER---NLYLTLQLLEL  111 (274)
T ss_dssp             -----------------------------------CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHH---HHHHHHHHHHH
T ss_pred             ---------------------------------ccCCHHHHHHHHHHhhcCCCEEEEEecCCChHH---HHHHHHHHHhc
Confidence                                             0000011223333  378999999999998543   33444445443


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                          ++|+|+|+||+|+...                               +.+. .....+++ ..++++++|||++|.
T Consensus       112 ----~~p~ivv~NK~Dl~~~-------------------------------~~~~-~~~~~l~~-~lg~~~i~~SA~~g~  154 (274)
T 3i8s_A          112 ----GIPCIVALNMLDIAEK-------------------------------QNIR-IEIDALSA-RLGCPVIPLVSTRGR  154 (274)
T ss_dssp             ----TCCEEEEEECHHHHHH-------------------------------TTEE-ECHHHHHH-HHTSCEEECCCGGGH
T ss_pred             ----CCCEEEEEECccchhh-------------------------------hhHH-HHHHHHHH-hcCCCEEEEEcCCCC
Confidence                6899999999998765                               1111 11233443 446789999999999


Q ss_pred             cHHHHHHHHHHHH
Q psy1524         298 NITQVFKELLVQA  310 (592)
Q Consensus       298 gVeeLf~~Li~~i  310 (592)
                      ||+++|+.+.+.+
T Consensus       155 gi~el~~~i~~~~  167 (274)
T 3i8s_A          155 GIEALKLAIDRYK  167 (274)
T ss_dssp             HHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999887665

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.78  E-value=2.9e-18  Score=186.10  Aligned_cols=162  Identities=16%  Similarity=0.228  Sum_probs=108.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      .+|+|+|.+|||||||+|+|++...  ..++.+++.+.....+.+++..+  +||||+|+....                
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~--~l~DT~G~~~~~----------------   63 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTF--KLVDTCGVFDNP----------------   63 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEE--EEEECTTTTSSG----------------
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEE--EEEECCCccccc----------------
Confidence            4899999999999999999998763  46667777787778888888764  569999982100                


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                    ....++.+......++++||++|+|||+++..++.+.. +...+.+    
T Consensus        64 ------------------------------~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~-i~~~l~~----  108 (439)
T 1mky_A           64 ------------------------------QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDES-LADFLRK----  108 (439)
T ss_dssp             ------------------------------GGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHH-HHHHHHH----
T ss_pred             ------------------------------cchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHH-HHHHHHH----
Confidence                                          00112456667778899999999999999887765421 2222332    


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHH-HHHHhhcCCCeEEEcccCCCccH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTT-ESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~-~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      .++|+|+|+||+|+...                                 . ..++ ..+.. .....+++|||++|.||
T Consensus       109 ~~~p~ilv~NK~D~~~~---------------------------------~-~~~~~~~~~~-lg~~~~~~iSA~~g~gv  153 (439)
T 1mky_A          109 STVDTILVANKAENLRE---------------------------------F-EREVKPELYS-LGFGEPIPVSAEHNINL  153 (439)
T ss_dssp             HTCCEEEEEESCCSHHH---------------------------------H-HHHTHHHHGG-GSSCSCEECBTTTTBSH
T ss_pred             cCCCEEEEEeCCCCccc---------------------------------c-HHHHHHHHHh-cCCCCEEEEeccCCCCH
Confidence            26899999999998532                                 0 0112 33332 22225899999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1524         300 TQVFKELLVQAKV  312 (592)
Q Consensus       300 eeLf~~Li~~i~~  312 (592)
                      +++|+.+++.+..
T Consensus       154 ~~L~~~i~~~l~~  166 (439)
T 1mky_A          154 DTMLETIIKKLEE  166 (439)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccc
Confidence            9999999998853

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.77  E-value=1.2e-18  Score=191.42  Aligned_cols=158  Identities=20%  Similarity=0.345  Sum_probs=117.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCC--CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCC-CCCcccccccccCCCCc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNT--FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ-SGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~--f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~-~~~~~~~~~~~~~~~~~  138 (592)
                      .++|+|+|.+|||||||+|+|++..  +..++.+|+.|.....+.+++..  +.||||+|+. ....             
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~--~~l~DTaG~~~~~~~-------------  307 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL--FRIVDTAGVRSETND-------------  307 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE--EEEEESSCCCSSCCT-------------
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE--EEEEECCCccccchh-------------
Confidence            3899999999999999999999775  46778888888888888888865  5669999993 2110             


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchh-HHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFP-AMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                      ..                                   +.+. .....++..||++|+|||++++.++++... +..+   
T Consensus       308 ~v-----------------------------------e~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~i-l~~l---  348 (482)
T 1xzp_A          308 LV-----------------------------------ERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKI-LERI---  348 (482)
T ss_dssp             TC-----------------------------------CCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHH-HHHH---
T ss_pred             hH-----------------------------------HHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHH-HHHh---
Confidence            00                                   1111 122346889999999999999999876542 2222   


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                         .++|+|+|+||+|+...                                 ++.++...++.  ...++++|||++|.
T Consensus       349 ---~~~piivV~NK~DL~~~---------------------------------~~~~~~~~~~~--~~~~~i~iSAktg~  390 (482)
T 1xzp_A          349 ---KNKRYLVVINKVDVVEK---------------------------------INEEEIKNKLG--TDRHMVKISALKGE  390 (482)
T ss_dssp             ---TTSSEEEEEEECSSCCC---------------------------------CCHHHHHHHHT--CSTTEEEEEGGGTC
T ss_pred             ---cCCCEEEEEECcccccc---------------------------------cCHHHHHHHhc--CCCcEEEEECCCCC
Confidence               36899999999999642                                 22334444332  34679999999999


Q ss_pred             cHHHHHHHHHHHHH
Q psy1524         298 NITQVFKELLVQAK  311 (592)
Q Consensus       298 gVeeLf~~Li~~i~  311 (592)
                      ||+++|+.|.+.+.
T Consensus       391 Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          391 GLEKLEESIYRETQ  404 (482)
T ss_dssp             CHHHHHHHHHHHTH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998764

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.75  E-value=1.7e-17  Score=175.28  Aligned_cols=170  Identities=21%  Similarity=0.224  Sum_probs=118.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ...++|+|+|++|||||||+|+|++..+. ..+..++.+.....+..++  ..+.+|||+|+....            .+
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~------------~~  230 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRP------------IS  230 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSC------------ST
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccc------------hh
Confidence            45689999999999999999999987643 2334445444444444454  456779999982100            00


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC--CHHHHHHHHHHHHH
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN--SFEEIRLIRDHIFE  216 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~--Sfe~l~~~l~~L~~  216 (592)
                      ..+.                                 -... ....+...+|++|+|+|+++..  +++....|+..+..
T Consensus       231 ~~~~---------------------------------~~~~-~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~  276 (357)
T 2e87_A          231 ERNE---------------------------------IEKQ-AILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG  276 (357)
T ss_dssp             TSCH---------------------------------HHHH-HHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHH
T ss_pred             hhhH---------------------------------HHHH-HHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHH
Confidence            0000                                 0001 1123345699999999999887  78888888888877


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      ..  .+.|+|+|+||+|+....                               .  .+++..++. ....++++|||++|
T Consensus       277 ~~--~~~piilV~NK~Dl~~~~-------------------------------~--~~~~~~~~~-~~~~~~~~iSA~~g  320 (357)
T 2e87_A          277 EF--KDLPFLVVINKIDVADEE-------------------------------N--IKRLEKFVK-EKGLNPIKISALKG  320 (357)
T ss_dssp             HT--TTSCEEEEECCTTTCCHH-------------------------------H--HHHHHHHHH-HTTCCCEECBTTTT
T ss_pred             hc--CCCCEEEEEECcccCChH-------------------------------H--HHHHHHHHH-hcCCCeEEEeCCCC
Confidence            53  278999999999997641                               1  133444444 34678999999999


Q ss_pred             ccHHHHHHHHHHHHHHh
Q psy1524         297 TNITQVFKELLVQAKVK  313 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~~~  313 (592)
                      +||+++|+.+++.+...
T Consensus       321 ~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          321 TGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             BTHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHH
Confidence            99999999999988543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.75  E-value=2.8e-18  Score=180.82  Aligned_cols=162  Identities=17%  Similarity=0.188  Sum_probs=116.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      .+|+|+|.+|||||||+|+|++... ..++..|+.+.....+.+++. ..+.||||||+.+.                  
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~------------------  219 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEG------------------  219 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHH------------------
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCccc------------------
Confidence            3689999999999999999997654 245666666555555666642 34667999997100                  


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHh---hhcCCcEEEEEeCCC---cCCHHHHHHHHHHHH
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALS---ISSADAFILVYAIDD---PNSFEEIRLIRDHIF  215 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~---~~~AD~iIlVyDvsd---~~Sfe~l~~~l~~L~  215 (592)
                            +                           ..+..+...+   +..+|++|+|||+++   +.+++++..|+.+|.
T Consensus       220 ------a---------------------------~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~  266 (342)
T 1lnz_A          220 ------A---------------------------HQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELS  266 (342)
T ss_dssp             ------T---------------------------TCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHH
T ss_pred             ------c---------------------------cccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHH
Confidence                  0                           1122233333   456999999999999   788999999999988


Q ss_pred             Hhhc-CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcC-CCeEEEccc
Q psy1524         216 ETKA-STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDW-ENGFVEASA  293 (592)
Q Consensus       216 ~~~~-~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~-~~~~~EvSA  293 (592)
                      .+.. ..++|+|+|+||+|+....                                   +....+++... ..++++|||
T Consensus       267 ~~~~~l~~~p~ilV~NK~Dl~~~~-----------------------------------e~~~~l~~~l~~~~~v~~iSA  311 (342)
T 1lnz_A          267 EYNLRLTERPQIIVANKMDMPEAA-----------------------------------ENLEAFKEKLTDDYPVFPISA  311 (342)
T ss_dssp             HSCSSTTTSCBCBEEECTTSTTHH-----------------------------------HHHHHHHHHCCSCCCBCCCSS
T ss_pred             HhhhhhcCCCEEEEEECccCCCCH-----------------------------------HHHHHHHHHhhcCCCEEEEEC
Confidence            7521 2578999999999987541                                   23344443222 257999999


Q ss_pred             CCCccHHHHHHHHHHHHH
Q psy1524         294 KDNTNITQVFKELLVQAK  311 (592)
Q Consensus       294 ktg~gVeeLf~~Li~~i~  311 (592)
                      +++.||+++|+.|.+.+.
T Consensus       312 ~tg~gi~eL~~~l~~~l~  329 (342)
T 1lnz_A          312 VTREGLRELLFEVANQLE  329 (342)
T ss_dssp             CCSSTTHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHh
Confidence            999999999999999883

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.74  E-value=1.2e-18  Score=188.49  Aligned_cols=163  Identities=21%  Similarity=0.189  Sum_probs=111.0

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP  135 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~  135 (592)
                      .....++|+|+|..|||||||+|+|++..+.  ..+..++.+.....+.+++. ..++||||||+.+....         
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l---------   99 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGEL---------   99 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTT---------
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccch---------
Confidence            3456799999999999999999999988763  45566666777777777664 25677999999321100         


Q ss_pred             CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524         136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF  215 (592)
Q Consensus       136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~  215 (592)
                                                            ....+. ....++..+|++|+|||++.   ......|+..+.
T Consensus       100 --------------------------------------~~~~~~-~~~~~l~~aD~vllVvD~~~---~~~~~~~l~~l~  137 (423)
T 3qq5_A          100 --------------------------------------GRLRVE-KARRVFYRADCGILVTDSAP---TPYEDDVVNLFK  137 (423)
T ss_dssp             --------------------------------------CCCCHH-HHHHHHTSCSEEEEECSSSC---CHHHHHHHHHHH
T ss_pred             --------------------------------------hHHHHH-HHHHHHhcCCEEEEEEeCCC---hHHHHHHHHHHH
Confidence                                                  001122 23456888999999999832   234456777776


Q ss_pred             HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCC
Q psy1524         216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKD  295 (592)
Q Consensus       216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAkt  295 (592)
                      +.    ++|+|+|+||+|+...                               +..  +.+..+++ ..+.++++|||++
T Consensus       138 ~~----~~piIvV~NK~Dl~~~-------------------------------~~~--~~~~~l~~-~~g~~v~~vSAkt  179 (423)
T 3qq5_A          138 EM----EIPFVVVVNKIDVLGE-------------------------------KAE--ELKGLYES-RYEAKVLLVSALQ  179 (423)
T ss_dssp             HT----TCCEEEECCCCTTTTC-------------------------------CCT--HHHHHSSC-CTTCCCCCCSSCC
T ss_pred             hc----CCCEEEEEeCcCCCCc-------------------------------cHH--HHHHHHHH-HcCCCEEEEECCC
Confidence            64    7899999999999865                               122  44455544 4567899999999


Q ss_pred             CccHHHHHHHHHHHH
Q psy1524         296 NTNITQVFKELLVQA  310 (592)
Q Consensus       296 g~gVeeLf~~Li~~i  310 (592)
                      |.||+++|+.+++.+
T Consensus       180 g~gI~eL~~~L~~~l  194 (423)
T 3qq5_A          180 KKGFDDIGKTISEIL  194 (423)
T ss_dssp             TTSTTTHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999999999887

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.74  E-value=3.1e-17  Score=178.05  Aligned_cols=171  Identities=20%  Similarity=0.237  Sum_probs=113.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ...+||+|+|++|||||||+|+|++..+  ...+..|+.+.....+.+++..+  .+|||+|+......           
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~--~l~Dt~G~~~~~~~-----------  244 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY--VFVDTAGLRRKSRV-----------  244 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE--EESSCSCC-----------------
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE--EEEECCCCcccccc-----------
Confidence            3569999999999999999999998765  46667777777777788888754  56999998211000           


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHH-HHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR-ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~-~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                              ..                         ...+.|..+. ..++..+|++++|+|+++..++.+.. +...+..
T Consensus       245 --------~~-------------------------~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~-i~~~l~~  290 (439)
T 1mky_A          245 --------EP-------------------------RTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQR-MAGLMER  290 (439)
T ss_dssp             --------------------------------------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH
T ss_pred             --------ch-------------------------hhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHH-HHHHHHH
Confidence                    00                         0003333333 24678899999999999988876532 2333322


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHH-----HHHHhhcCCCeEEEc
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTT-----ESVVQVDWENGFVEA  291 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~-----~~la~~~~~~~~~Ev  291 (592)
                          .++|+|+|+||+|+.+.                               +..+.++.     ..+.. ....+++++
T Consensus       291 ----~~~~~ilv~NK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~  334 (439)
T 1mky_A          291 ----RGRASVVVFNKWDLVVH-------------------------------REKRYDEFTKLFREKLYF-IDYSPLIFT  334 (439)
T ss_dssp             ----TTCEEEEEEECGGGSTT-------------------------------GGGCHHHHHHHHHHHCGG-GTTSCEEEC
T ss_pred             ----cCCCEEEEEECccCCCc-------------------------------hhhHHHHHHHHHHHHhcc-CCCCcEEEE
Confidence                47899999999999764                               11222222     22221 335679999


Q ss_pred             ccCCCccHHHHHHHHHHHHHHh
Q psy1524         292 SAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       292 SAktg~gVeeLf~~Li~~i~~~  313 (592)
                      ||++|.||+++|+.+.+.+...
T Consensus       335 SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          335 SADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999887654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.73  E-value=4.9e-18  Score=184.19  Aligned_cols=160  Identities=16%  Similarity=0.169  Sum_probs=101.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      .++|+|+|.+|||||||+|+|++..+.  ..+.+++.+.....+..++.  .+.||||+|+....               
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~---------------   65 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY--DFNLIDTGGIDIGD---------------   65 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSS--CCEEEC-----------------------
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCc--eEEEEECCCCCCcc---------------
Confidence            369999999999999999999987653  55566666766666666665  45669999982100               


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                      ....+.+......++..||++|+|+|+++..++.+.  ++..+.+   
T Consensus        66 --------------------------------~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~--~~~~~l~---  108 (436)
T 2hjg_A           66 --------------------------------EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADE--EVAKILY---  108 (436)
T ss_dssp             ---------------------------------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHT---
T ss_pred             --------------------------------hhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH--HHHHHHH---
Confidence                                            001145667777889999999999999998887653  2332222   


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..++|+|+|+||+|+.....                              .     +..+.. .....+++|||++|.|+
T Consensus       109 ~~~~pvilv~NK~D~~~~~~------------------------------~-----~~~~~~-lg~~~~~~iSA~~g~gv  152 (436)
T 2hjg_A          109 RTKKPVVLAVNKLDNTEMRA------------------------------N-----IYDFYS-LGFGEPYPISGTHGLGL  152 (436)
T ss_dssp             TCCSCEEEEEECCCC-----------------------------------C-----CCSSGG-GSSCCCEECBTTTTBTH
T ss_pred             HcCCCEEEEEECccCccchh------------------------------h-----HHHHHH-cCCCCeEEEeCcCCCCh
Confidence            35789999999999875410                              0     001111 11225899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1524         300 TQVFKELLVQAK  311 (592)
Q Consensus       300 eeLf~~Li~~i~  311 (592)
                      +++|+.+++.+.
T Consensus       153 ~~L~~~i~~~l~  164 (436)
T 2hjg_A          153 GDLLDAVAEHFK  164 (436)
T ss_dssp             HHHHHHHHHTGG
T ss_pred             HHHHHHHHHhcC
Confidence            999999988774

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.73  E-value=5.4e-18  Score=185.35  Aligned_cols=158  Identities=21%  Similarity=0.333  Sum_probs=104.6

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCC--CCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNT--FSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~--f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ..++|+|+|++|||||||+|+|++..  +...+.+|+.+.....+.+++..+  .||||+|+.+..             .
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v--~liDT~G~~~~~-------------~  287 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPV--QVLDTAGIRETS-------------D  287 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEE--EECC----------------------
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEE--EEEECCccccch-------------h
Confidence            45899999999999999999999764  355666777777777778888655  569999983211             0


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                      ..+.+++.+                                  ...++..+|++|+|||++++.++.. ..++..+    
T Consensus       288 ~ve~~gi~~----------------------------------~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----  328 (462)
T 3geh_A          288 QVEKIGVER----------------------------------SRQAANTADLVLLTIDAATGWTTGD-QEIYEQV----  328 (462)
T ss_dssp             ---------------------------------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH----
T ss_pred             HHHHHHHHH----------------------------------HhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc----
Confidence            111111111                                  1124778999999999999888765 3344433    


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                        ...|+|+|+||+|+.....                               +.  ....+   ....++++|||++|.|
T Consensus       329 --~~~piivV~NK~Dl~~~~~-------------------------------~~--~~~~~---~~~~~~i~iSAktg~G  370 (462)
T 3geh_A          329 --KHRPLILVMNKIDLVEKQL-------------------------------IT--SLEYP---ENITQIVHTAAAQKQG  370 (462)
T ss_dssp             --TTSCEEEEEECTTSSCGGG-------------------------------ST--TCCCC---TTCCCEEEEBTTTTBS
T ss_pred             --cCCcEEEEEECCCCCcchh-------------------------------hH--HHHHh---ccCCcEEEEECCCCCC
Confidence              2369999999999976521                               00  00001   1345799999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQA  310 (592)
Q Consensus       299 VeeLf~~Li~~i  310 (592)
                      |+++|+.+.+.+
T Consensus       371 i~eL~~~i~~~~  382 (462)
T 3geh_A          371 IDSLETAILEIV  382 (462)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999887

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.71  E-value=1.4e-16  Score=170.96  Aligned_cols=165  Identities=15%  Similarity=0.129  Sum_probs=114.0

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeE-----------EE-----EEee---CCeEEEEEEEeCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMH-----------HE-----DFSM---NGVHLKLDILDTSG  119 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~-----------~~-----~v~v---dg~~v~L~I~DT~G  119 (592)
                      ....++|+++|.+|||||||+++|++...............           ..     .+..   ......+.||||||
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG   84 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG   84 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence            35679999999999999999999997543321000000000           00     0000   11226788899999


Q ss_pred             CCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCC
Q psy1524         120 EQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAID  199 (592)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvs  199 (592)
                      +                                                       +.|......++..+|++|+|+|++
T Consensus        85 h-------------------------------------------------------~~~~~~~~~~~~~~D~~ilVvda~  109 (403)
T 3sjy_A           85 H-------------------------------------------------------EVLMATMLSGAALMDGAILVVAAN  109 (403)
T ss_dssp             C-------------------------------------------------------GGGHHHHHHHHTTCSEEEEEEETT
T ss_pred             c-------------------------------------------------------HHHHHHHHHHHhhCCEEEEEEECC
Confidence            9                                                       788888888899999999999999


Q ss_pred             CcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHH
Q psy1524         200 DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESV  279 (592)
Q Consensus       200 d~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~l  279 (592)
                      +..++.....++..+...   ...|+|+|+||+|+.+....                             ....++...+
T Consensus       110 ~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~-----------------------------~~~~~~i~~~  157 (403)
T 3sjy_A          110 EPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEA-----------------------------LSQYRQIKQF  157 (403)
T ss_dssp             SCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHH-----------------------------HHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHH-----------------------------HHHHHHHHHH
Confidence            988788888887766554   23589999999999765210                             0011222223


Q ss_pred             Hhhc--CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         280 VQVD--WENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       280 a~~~--~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      ....  ...+++++||++|.||+++|+.|.+.+
T Consensus       158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence            2211  256799999999999999999998765

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.70  E-value=3.1e-17  Score=173.57  Aligned_cols=122  Identities=20%  Similarity=0.193  Sum_probs=92.3

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCCC----------cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCC
Q psy1524         176 NEFPAMRALSISSADAFILVYAIDD----------PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG  245 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvsd----------~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~  245 (592)
                      +.++.++..|+++++++|+|||+++          ..++.+...|+..+.......++|+|||+||+|+....  +  ..
T Consensus       204 e~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~k--i--~~  279 (353)
T 1cip_A          204 RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEK--I--KK  279 (353)
T ss_dssp             GGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHH--H--TT
T ss_pred             hhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhh--c--cc
Confidence            8899999999999999999999999          56688888888888765444679999999999996431  0  00


Q ss_pred             CCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh----------cCCCeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524         246 GPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV----------DWENGFVEASAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       246 ~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~----------~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~  313 (592)
                      ..+..++.            .....++.+++..++..          ...+.+++|||++|.||+++|+++.+.+...
T Consensus       280 ~~l~~~fp------------~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~  345 (353)
T 1cip_A          280 SPLTICYP------------EYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  345 (353)
T ss_dssp             SCGGGTCT------------TCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhccc------------ccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence            11111111            11124678888887762          3466799999999999999999999998654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.70  E-value=1.5e-16  Score=169.05  Aligned_cols=170  Identities=19%  Similarity=0.120  Sum_probs=111.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      .|+|+|++|||||||+|+|++..+. .++..++.|.....+.+++..  +.+|||+|+..           ..+...   
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~--v~l~DT~G~i~-----------~lp~~l---  244 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK--IMLVDTVGFIR-----------GIPPQI---  244 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE--EEEEECCCBCS-----------SCCGGG---
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE--EEEEeCCCchh-----------cCCHHH---
Confidence            4999999999999999999987653 455666667778888888854  56699999711           000000   


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC--CHHHHHHHHHHHHHhhcC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN--SFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~--Sfe~l~~~l~~L~~~~~~  220 (592)
                                                      .+.|..... .+..||++++|+|++++.  +++.+..|...+... ..
T Consensus       245 --------------------------------ve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~  290 (364)
T 2qtf_A          245 --------------------------------VDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREI-GV  290 (364)
T ss_dssp             --------------------------------HHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TC
T ss_pred             --------------------------------HHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-Cc
Confidence                                            023443333 478899999999999886  566666666666554 44


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc--CCCeEEEcccCCCcc
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD--WENGFVEASAKDNTN  298 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~--~~~~~~EvSAktg~g  298 (592)
                      .+.|+|+|+||+|+.....                             . ...+.+..+++..  ....++++||++|.|
T Consensus       291 ~~~p~ilV~NK~Dl~~~~~-----------------------------~-~~~~~~~~l~~~l~~~~~~~~~~SA~~g~g  340 (364)
T 2qtf_A          291 SGKPILVTLNKIDKINGDL-----------------------------Y-KKLDLVEKLSKELYSPIFDVIPISALKRTN  340 (364)
T ss_dssp             CSCCEEEEEECGGGCCSCH-----------------------------H-HHHHHHHHHHHHHCSCEEEEEECBTTTTBS
T ss_pred             CCCCEEEEEECCCCCCchH-----------------------------H-HHHHHHHHHHHHhcCCCCcEEEEECCCCcC
Confidence            6789999999999875310                             0 0011222222322  134689999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy1524         299 ITQVFKELLVQAKVK  313 (592)
Q Consensus       299 VeeLf~~Li~~i~~~  313 (592)
                      ++++++.|.+.+...
T Consensus       341 i~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          341 LELLRDKIYQLATQL  355 (364)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999877543

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.69  E-value=1.6e-17  Score=175.71  Aligned_cols=128  Identities=12%  Similarity=0.078  Sum_probs=87.6

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCC----------CcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCC
Q psy1524         176 NEFPAMRALSISSADAFILVYAID----------DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG  245 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvs----------d~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~  245 (592)
                      ++|+.++..|+++++++|+|||++          +..+|+++..|+..+.+.....++|+||||||+||......  ...
T Consensus       194 e~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~--~v~  271 (354)
T 2xtz_A          194 RNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVL--DVP  271 (354)
T ss_dssp             TTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTT--TSC
T ss_pred             hhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcc--ccc
Confidence            889999999999999999999998          78899999999988877544468999999999999754100  000


Q ss_pred             CCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc---------------CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         246 GPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD---------------WENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       246 ~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~---------------~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      .....++.+..        .......+.+++..++...               ....+++|||+++.||+++|+.+.+.+
T Consensus       272 l~~~~~fp~y~--------~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I  343 (354)
T 2xtz_A          272 LNVCEWFRDYQ--------PVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETL  343 (354)
T ss_dssp             GGGSGGGTTCC--------CCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccccccccccc--------cccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHH
Confidence            00000000000        0000112356666664321               223468999999999999999999988


Q ss_pred             HHh
Q psy1524         311 KVK  313 (592)
Q Consensus       311 ~~~  313 (592)
                      ...
T Consensus       344 ~~~  346 (354)
T 2xtz_A          344 RRR  346 (354)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.69  E-value=3e-16  Score=155.63  Aligned_cols=180  Identities=12%  Similarity=0.165  Sum_probs=106.4

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccC---ceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKR---TIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP  135 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~---Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~  135 (592)
                      ....+||+|+|.+|||||||+|+|++..+.....+   ++.+.....+.+++..  +.||||||..+.....        
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDTpG~~~~~~~~--------   95 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETE--LVVVDTPGIFDTEVPN--------   95 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEE--EEEEECCSCC-----C--------
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCce--EEEEECCCccCCCCCH--------
Confidence            35679999999999999999999998877544333   3345666667777754  4569999982110000        


Q ss_pred             CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524         136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF  215 (592)
Q Consensus       136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~  215 (592)
                                                          ....+.+......++.++|++|+|+|+++....  ...++..+.
T Consensus        96 ------------------------------------~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~  137 (239)
T 3lxx_A           96 ------------------------------------AETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKIL  137 (239)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHH
T ss_pred             ------------------------------------HHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHH
Confidence                                                000123444555566789999999999865542  223333333


Q ss_pred             Hhhc-CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524         216 ETKA-STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK  294 (592)
Q Consensus       216 ~~~~-~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk  294 (592)
                      +... ....|+|+|+||+|+.....        ...++                .. ..+....+++ ..+..|+.+++.
T Consensus       138 ~~~~~~~~~~~iiv~nK~D~~~~~~--------~~~~i----------------~~-~~~~l~~l~~-~~~~~~~~~~~~  191 (239)
T 3lxx_A          138 KMFGERARSFMILIFTRKDDLGDTN--------LHDYL----------------RE-APEDIQDLMD-IFGDRYCALNNK  191 (239)
T ss_dssp             HHHHHHHGGGEEEEEECGGGC-------------------------------------CHHHHHHHH-HHSSSEEECCTT
T ss_pred             HHhhhhccceEEEEEeCCccCCccc--------HHHHH----------------Hh-chHHHHHHHH-HcCCEEEEEECC
Confidence            2211 12459999999999875411        00000                00 1234555555 334457777766


Q ss_pred             CC-----ccHHHHHHHHHHHHHH
Q psy1524         295 DN-----TNITQVFKELLVQAKV  312 (592)
Q Consensus       295 tg-----~gVeeLf~~Li~~i~~  312 (592)
                      .+     .+|.++|+.+.+.+..
T Consensus       192 ~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          192 ATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHHHHH
Confidence            43     6899999988877743

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.68  E-value=1.4e-16  Score=162.00  Aligned_cols=168  Identities=18%  Similarity=0.220  Sum_probs=90.2

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCC-CCCCc-------cCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNT-FSPKY-------KRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGA  130 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~-f~~~~-------~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~  130 (592)
                      ...++|+|+|.+|||||||+|+|++.. +...+       .+|+. +.....+..++..+.++||||||+++.....   
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~---   82 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNS---   82 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCT---
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccch---
Confidence            457999999999999999999987554 44444       45555 5555556667777899999999984321100   


Q ss_pred             cccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHH-------HHhhh-------------cCC
Q psy1524         131 VLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR-------ALSIS-------------SAD  190 (592)
Q Consensus       131 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~-------~~~~~-------------~AD  190 (592)
                                                                   +.+..+.       ..|+.             ++|
T Consensus        83 ---------------------------------------------~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~  117 (274)
T 3t5d_A           83 ---------------------------------------------NCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQ  117 (274)
T ss_dssp             ---------------------------------------------TTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCC
T ss_pred             ---------------------------------------------hhHHHHHHHHHHHHHHHHHhhcccccccccCCcee
Confidence                                                         1122221       22232             378


Q ss_pred             cEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCC
Q psy1524         191 AFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQ  270 (592)
Q Consensus       191 ~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~  270 (592)
                      ++++++|.++......-..++..+.    . ++|+|+|+||+|+......                             .
T Consensus       118 ~~l~~i~~~~~~~~~~d~~~l~~l~----~-~~pvi~V~nK~D~~~~~e~-----------------------------~  163 (274)
T 3t5d_A          118 CCLYFIAPSGHGLKPLDIEFMKRLH----E-KVNIIPLIAKADTLTPEEC-----------------------------Q  163 (274)
T ss_dssp             EEEEEECSCCSSCCHHHHHHHHHHT----T-TSCEEEEESSGGGSCHHHH-----------------------------H
T ss_pred             EEEEEecCCCCCCCHHHHHHHHHHh----c-cCCEEEEEeccCCCCHHHH-----------------------------H
Confidence            9999998766432222222333332    2 7899999999998754110                             0


Q ss_pred             CChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         271 VPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       271 Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      ...+....... ..+++++++||+++.|++++++.|.+.+
T Consensus       164 ~~~~~i~~~l~-~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          164 QFKKQIMKEIQ-EHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHH-HTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHH-HcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            00112222222 3466789999999999999998887654

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.68  E-value=1.6e-16  Score=159.35  Aligned_cols=182  Identities=15%  Similarity=0.151  Sum_probs=105.8

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCC-CCCCccC--ceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNT-FSPKYKR--TIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGP  135 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~-f~~~~~~--Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~  135 (592)
                      ....++|+|+|.+|||||||+|+|++.. +...+.+  ++.+.....+..++..  +.||||||+.+....         
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~iiDTpG~~~~~~~---------   87 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE--IVIIDTPDMFSWKDH---------   87 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEE--EEEEECCGGGGSSCC---------
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCE--EEEEECcCCCCCCCC---------
Confidence            3567999999999999999999999876 5544444  3445666666777754  566999998211000         


Q ss_pred             CCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524         136 KKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIF  215 (592)
Q Consensus       136 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~  215 (592)
                          .+.                               ..+.+......+++.+|++|+|||+++....  ...++..+.
T Consensus        88 ----~~~-------------------------------~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~--~~~~~~~l~  130 (260)
T 2xtp_A           88 ----CEA-------------------------------LYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQ--DQQAAQRVK  130 (260)
T ss_dssp             ----CHH-------------------------------HHHHHHHHHHHHTTCCSEEEEEEETTCCCHH--HHHHHHHHH
T ss_pred             ----HHH-------------------------------HHHHHHHHHHhcCCCCcEEEEEEeCCCCCHH--HHHHHHHHH
Confidence                000                               0011122334467899999999999862211  122333343


Q ss_pred             HhhcC-CCCCEEEEEe-CCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCC--eE--E
Q psy1524         216 ETKAS-TAVPIVVVGN-KSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWEN--GF--V  289 (592)
Q Consensus       216 ~~~~~-~~~PIILVgN-K~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~--~~--~  289 (592)
                      +.... ...|+|+|+| |+|+....  +       ...+.                ....+++..++......  .+  +
T Consensus       131 ~~~~~~~~~~~i~vv~nK~Dl~~~~--~-------~~~i~----------------~~~~~~~~~~~~~~~~~~~~~~~~  185 (260)
T 2xtp_A          131 EIFGEDAMGHTIVLFTHKEDLNGGS--L-------MDYMH----------------DSDNKALSKLVAACGGRICAFNNR  185 (260)
T ss_dssp             HHHCGGGGGGEEEEEECGGGGTTCC--H-------HHHHH----------------HCCCHHHHHHHHHTTTCEEECCTT
T ss_pred             HHhCchhhccEEEEEEcccccCCcc--H-------HHHHH----------------hcchHHHHHHHHHhCCeEEEecCc
Confidence            33111 1346666666 99997430  0       00000                00012233333322111  12  7


Q ss_pred             EcccCCCccHHHHHHHHHHHHHHh
Q psy1524         290 EASAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       290 EvSAktg~gVeeLf~~Li~~i~~~  313 (592)
                      ++||++|.||+++|+.+.+.+...
T Consensus       186 ~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          186 AEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccHHHHHHHHHHHHHHHHhC
Confidence            899999999999999999988654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.67  E-value=7.6e-16  Score=165.54  Aligned_cols=164  Identities=20%  Similarity=0.215  Sum_probs=100.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC---CCCCCccC--cee-eeEEEEEee-------------C--C----eEEEEEE
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN---TFSPKYKR--TIE-EMHHEDFSM-------------N--G----VHLKLDI  114 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~---~f~~~~~~--Tt~-d~~~~~v~v-------------d--g----~~v~L~I  114 (592)
                      ...++|+++|..++|||||+++|++.   .+.....+  |+. .+....+..             +  +    ....+.|
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            45699999999999999999999944   33333333  443 222222211             1  1    1367888


Q ss_pred             EeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEE
Q psy1524         115 LDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFIL  194 (592)
Q Consensus       115 ~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIl  194 (592)
                      |||||+                                                       +.|.......+..+|++|+
T Consensus        86 iDtPGh-------------------------------------------------------~~f~~~~~~~~~~~D~~il  110 (408)
T 1s0u_A           86 VDSPGH-------------------------------------------------------ETLMATMLSGASLMDGAIL  110 (408)
T ss_dssp             EECSSH-------------------------------------------------------HHHHHHHHTTCSCCSEEEE
T ss_pred             EECCCH-------------------------------------------------------HHHHHHHHHhHhhCCEEEE
Confidence            999999                                                       6676666666778899999


Q ss_pred             EEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChH
Q psy1524         195 VYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYD  274 (592)
Q Consensus       195 VyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~e  274 (592)
                      |+|+++..........+..+...   ...|+|+|+||+|+.+...                             .....+
T Consensus       111 Vvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~-----------------------------~~~~~~  158 (408)
T 1s0u_A          111 VIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQ-----------------------------AEENYE  158 (408)
T ss_dssp             EEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTT-----------------------------TTTHHH
T ss_pred             EEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHH-----------------------------HHHHHH
Confidence            99999754222222222223222   2358999999999976511                             112344


Q ss_pred             HHHHHHhhc--CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         275 TTESVVQVD--WENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       275 e~~~la~~~--~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      ++..+++..  ...+++++||++|.||+++++.|.+.+
T Consensus       159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred             HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            555555432  356899999999999999999998765

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.66  E-value=4.5e-17  Score=154.58  Aligned_cols=115  Identities=14%  Similarity=0.233  Sum_probs=83.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCC---CccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSP---KYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~---~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ...++|+|+|++|||||||+++|++..+..   .+.+++.        .+...+.+.||||+|+                
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~Dt~G~----------------  101 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA--------ADYDGSGVTLVDFPGH----------------  101 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTC----------------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee--------eeecCCeEEEEECCCC----------------
Confidence            567899999999999999999999887653   2222222        1113355677999999                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhc----CCcEEEEEeCC-CcCCHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISS----ADAFILVYAID-DPNSFEEIRLIR  211 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~----AD~iIlVyDvs-d~~Sfe~l~~~l  211 (592)
                                                             +.+...+..++..    +|++|+|||++ +..+|..+..|+
T Consensus       102 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~  142 (193)
T 2ged_A          102 ---------------------------------------VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFL  142 (193)
T ss_dssp             ---------------------------------------CBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHH
T ss_pred             ---------------------------------------chHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHH
Confidence                                                   3444444444444    89999999999 889999998888


Q ss_pred             HHHHHhh---cCCCCCEEEEEeCCCCccc
Q psy1524         212 DHIFETK---ASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       212 ~~L~~~~---~~~~~PIILVgNK~DL~~~  237 (592)
                      ..+....   ...++|+++|+||+|+...
T Consensus       143 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  171 (193)
T 2ged_A          143 VDILSITESSCENGIDILIACNKSELFTA  171 (193)
T ss_dssp             HHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             HHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence            8776543   2357999999999999865

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.66  E-value=1.5e-16  Score=164.42  Aligned_cols=165  Identities=15%  Similarity=0.129  Sum_probs=105.7

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      +..+|+|+|.+|||||||+|+|++..+.  .....|+.+.....+..++  ..+.||||||+..                
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~----------------   68 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHM----------------   68 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCH----------------
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCc----------------
Confidence            4568999999999999999999988653  3344455554444444455  4566799999810                


Q ss_pred             CchhH-HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         139 GLDKV-CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       139 ~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                        +.. .+.                             +.+......++..+|++++|+|+++ -+  ....++....  
T Consensus        69 --~~~~~l~-----------------------------~~~~~~~~~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l--  112 (301)
T 1ega_A           69 --EEKRAIN-----------------------------RLMNKAASSSIGDVELVIFVVEGTR-WT--PDDEMVLNKL--  112 (301)
T ss_dssp             --HHHHHHH-----------------------------HHHTCCTTSCCCCEEEEEEEEETTC-CC--HHHHHHHHHH--
T ss_pred             --cchhhHH-----------------------------HHHHHHHHHHHhcCCEEEEEEeCCC-CC--HHHHHHHHHH--
Confidence              000 000                             1111122234778999999999987 33  2233332222  


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                       ...+.|+|+|+||+|+....                               ....+....+.+......++++||++|.
T Consensus       113 -~~~~~P~ilvlNK~D~~~~~-------------------------------~~~~~~l~~l~~~~~~~~~i~iSA~~g~  160 (301)
T 1ega_A          113 -REGKAPVILAVNKVDNVQEK-------------------------------ADLLPHLQFLASQMNFLDIVPISAETGL  160 (301)
T ss_dssp             -HSSSSCEEEEEESTTTCCCH-------------------------------HHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred             -HhcCCCEEEEEECcccCccH-------------------------------HHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence             23478999999999987520                               0112333444442222369999999999


Q ss_pred             cHHHHHHHHHHHHH
Q psy1524         298 NITQVFKELLVQAK  311 (592)
Q Consensus       298 gVeeLf~~Li~~i~  311 (592)
                      |++++++.+.+.+.
T Consensus       161 ~v~~l~~~i~~~l~  174 (301)
T 1ega_A          161 NVDTIAAIVRKHLP  174 (301)
T ss_dssp             THHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHhCC
Confidence            99999999987663

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.66  E-value=1e-16  Score=167.74  Aligned_cols=124  Identities=15%  Similarity=0.108  Sum_probs=91.7

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCC----------CcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCC
Q psy1524         176 NEFPAMRALSISSADAFILVYAID----------DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG  245 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvs----------d~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~  245 (592)
                      ++++.++..|+++++++|+|||++          +..++.+...|+..+.......++|+||++||+|+....    ...
T Consensus       178 e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~k----i~~  253 (327)
T 3ohm_A          178 RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEK----IMY  253 (327)
T ss_dssp             HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHH----TTT
T ss_pred             hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhh----hcc
Confidence            899999999999999999999665          667788888888887765444689999999999997641    111


Q ss_pred             CCcccccCCCCCccccccCCCCCCCCChHHHHHHHh---------hcCCCeEEEcccCCCccHHHHHHHHHHHHHHhc
Q psy1524         246 GPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ---------VDWENGFVEASAKDNTNITQVFKELLVQAKVKY  314 (592)
Q Consensus       246 ~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~---------~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~~  314 (592)
                      ..+..++.+.           ....++.+++..+..         ....+.+++|||+++.||+++|..+.+.+....
T Consensus       254 ~~l~~~fp~y-----------~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          254 SHLVDYFPEY-----------DGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             SCGGGTCTTC-----------CSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chHhhhchhc-----------cCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence            1222222211           124577888887742         134556899999999999999999999997653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.66  E-value=1.3e-16  Score=173.88  Aligned_cols=163  Identities=17%  Similarity=0.197  Sum_probs=100.7

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ++...+|+|+|.+|||||||+|+|++..+.  ..+..++.+.....+..++.  .++||||+|....             
T Consensus        20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDT~G~~~~-------------   84 (456)
T 4dcu_A           20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY--DFNLIDTGGIDIG-------------   84 (456)
T ss_dssp             ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSS--CCEEECCCC-----------------
T ss_pred             hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCc--eEEEEECCCCCCc-------------
Confidence            345679999999999999999999987653  44455555555554444554  5667999997110             


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                        ....++++......++..||++|+|+|+++..+..+  .++..+..
T Consensus        85 ----------------------------------~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d--~~l~~~l~  128 (456)
T 4dcu_A           85 ----------------------------------DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILY  128 (456)
T ss_dssp             ------------------------------------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH--HHHHHHHT
T ss_pred             ----------------------------------chHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH--HHHHHHHH
Confidence                                              001126777788889999999999999887555443  33333322


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                         ..++|+|+|+||+|+.....                                   ....+..... ...+++||++|
T Consensus       129 ---~~~~pvilV~NK~D~~~~~~-----------------------------------~~~e~~~lg~-~~~~~iSA~~g  169 (456)
T 4dcu_A          129 ---RTKKPVVLAVNKLDNTEMRA-----------------------------------NIYDFYSLGF-GEPYPISGTHG  169 (456)
T ss_dssp             ---TCCSCEEEEEECC--------------------------------------------CCSGGGSS-SSEEECCTTTC
T ss_pred             ---HcCCCEEEEEECccchhhhh-----------------------------------hHHHHHHcCC-CceEEeecccc
Confidence               35789999999999875410                                   0111112122 24679999999


Q ss_pred             ccHHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQAK  311 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~  311 (592)
                      .|++++++.+.+.+.
T Consensus       170 ~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          170 LGLGDLLDAVAEHFK  184 (456)
T ss_dssp             TTHHHHHHHHHTTGG
T ss_pred             cchHHHHHHHHhhcc
Confidence            999999999988764

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.65  E-value=1.1e-15  Score=171.98  Aligned_cols=157  Identities=18%  Similarity=0.244  Sum_probs=107.1

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcC--CCCC-----CccCc------ee-eeE--EEEEee---CCeEEEEEEEeCCCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYN--TFSP-----KYKRT------IE-EMH--HEDFSM---NGVHLKLDILDTSGEQ  121 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~--~f~~-----~~~~T------t~-d~~--~~~v~v---dg~~v~L~I~DT~G~~  121 (592)
                      +..+|+|+|..++|||||+++|+..  .+..     .+..+      .+ +..  ...+.+   ++..+.++||||||+ 
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh-   81 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH-   81 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc-
Confidence            4579999999999999999999852  2211     11111      01 111  111222   566789999999999 


Q ss_pred             CCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc
Q psy1524         122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP  201 (592)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~  201 (592)
                                                                            +.|......++..+|++|+|+|+++.
T Consensus        82 ------------------------------------------------------~dF~~ev~~~l~~aD~aILVVDa~~g  107 (599)
T 3cb4_D           82 ------------------------------------------------------VDFSYEVSRSLAACEGALLVVDAGQG  107 (599)
T ss_dssp             ------------------------------------------------------GGGHHHHHHHHHHCSEEEEEEETTTC
T ss_pred             ------------------------------------------------------hHHHHHHHHHHHHCCEEEEEEECCCC
Confidence                                                                  77888888889999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh
Q psy1524         202 NSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ  281 (592)
Q Consensus       202 ~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~  281 (592)
                      .++.....|...+.     .++|+|+|+||+|+...+                                 ..+...++..
T Consensus       108 v~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~---------------------------------~~~v~~ei~~  149 (599)
T 3cb4_D          108 VEAQTLANCYTAME-----MDLEVVPVLNKIDLPAAD---------------------------------PERVAEEIED  149 (599)
T ss_dssp             CCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC---------------------------------HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH-----CCCCEEEeeeccCccccc---------------------------------HHHHHHHHHH
Confidence            88888777766542     368999999999997541                                 1122233333


Q ss_pred             hcC--CCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         282 VDW--ENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       282 ~~~--~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      ...  ...++++||++|.||+++|+.+++.+
T Consensus       150 ~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~l  180 (599)
T 3cb4_D          150 IVGIDATDAVRCSAKTGVGVQDVLERLVRDI  180 (599)
T ss_dssp             HTCCCCTTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred             HhCCCcceEEEeecccCCCchhHHHHHhhcC
Confidence            211  12489999999999999999998876

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.65  E-value=1.5e-15  Score=170.66  Aligned_cols=157  Identities=17%  Similarity=0.244  Sum_probs=109.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC--CCCCC-----ccC----------cee-eeEEEEEee-CCeEEEEEEEeCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPK-----YKR----------TIE-EMHHEDFSM-NGVHLKLDILDTSGE  120 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~-----~~~----------Tt~-d~~~~~v~v-dg~~v~L~I~DT~G~  120 (592)
                      ....+|+|+|..++|||||+++|+..  .+...     +..          |+. ......+.. ++..+.++||||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            35679999999999999999999852  22111     000          111 011111121 566789999999999


Q ss_pred             CCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC
Q psy1524         121 QSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD  200 (592)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd  200 (592)
                                                                             +.|......++..+|++|+|+|+++
T Consensus        84 -------------------------------------------------------~dF~~ev~r~l~~aD~aILVVDa~~  108 (600)
T 2ywe_A           84 -------------------------------------------------------VDFSYEVSRALAACEGALLLIDASQ  108 (600)
T ss_dssp             -------------------------------------------------------GGGHHHHHHHHHTCSEEEEEEETTT
T ss_pred             -------------------------------------------------------HhHHHHHHHHHHhCCEEEEEEECCC
Confidence                                                                   7787778888999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHH
Q psy1524         201 PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVV  280 (592)
Q Consensus       201 ~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la  280 (592)
                      ..++.....|...+.     .++|+|+|+||+|+...+                                 ..+...++.
T Consensus       109 gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~---------------------------------~~~v~~el~  150 (600)
T 2ywe_A          109 GIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD---------------------------------VDRVKKQIE  150 (600)
T ss_dssp             BCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC---------------------------------HHHHHHHHH
T ss_pred             CccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC---------------------------------HHHHHHHHH
Confidence            999888877766442     368999999999997541                                 111223333


Q ss_pred             hhcCCC---eEEEcccCCCccHHHHHHHHHHHH
Q psy1524         281 QVDWEN---GFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       281 ~~~~~~---~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      . ..+.   .++++||++|.||+++|+.+++.+
T Consensus       151 ~-~lg~~~~~vi~vSAktg~GI~~Lle~I~~~l  182 (600)
T 2ywe_A          151 E-VLGLDPEEAILASAKEGIGIEEILEAIVNRI  182 (600)
T ss_dssp             H-TSCCCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred             H-hhCCCcccEEEEEeecCCCchHHHHHHHHhc
Confidence            3 2222   489999999999999999998876

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.65  E-value=5.3e-16  Score=170.44  Aligned_cols=118  Identities=21%  Similarity=0.245  Sum_probs=77.3

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC--CCCCC------------------------------ccCceeeeEEEEEeeCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPK------------------------------YKRTIEEMHHEDFSMNG  107 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~------------------------------~~~Tt~d~~~~~v~vdg  107 (592)
                      ...+||+|+|.+|||||||+++|+..  .+...                              ....+.+.....+..+ 
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-  109 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-  109 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-
Confidence            45799999999999999999999854  11110                              0111222223333333 


Q ss_pred             eEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh
Q psy1524         108 VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS  187 (592)
Q Consensus       108 ~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~  187 (592)
                       .+.+.||||||+                                                       ++|......++.
T Consensus       110 -~~~~~iiDTPG~-------------------------------------------------------~~f~~~~~~~~~  133 (483)
T 3p26_A          110 -RANFTIVDAPGH-------------------------------------------------------RDFVPNAIMGIS  133 (483)
T ss_dssp             -SCEEEEECCCCC-------------------------------------------------------GGGHHHHHHHHT
T ss_pred             -CceEEEEECCCc-------------------------------------------------------HHHHHHHHHhhh
Confidence             456777999999                                                       788888888999


Q ss_pred             cCCcEEEEEeCCCcCCHHHH------HHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         188 SADAFILVYAIDDPNSFEEI------RLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       188 ~AD~iIlVyDvsd~~Sfe~l------~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      .+|++|+|+|+++..++..+      ...+..+..   ....|+|||+||+|+.+.
T Consensus       134 ~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~---~~~~~iIvviNK~Dl~~~  186 (483)
T 3p26_A          134 QADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---LGIHNLIIAMNKMDNVDW  186 (483)
T ss_dssp             TCSEEEEEEECCC------CCCCHHHHHHHHHHHH---TTCCCEEEEEECGGGGTT
T ss_pred             hCCEEEEEEECCCCccccccchhhhHHHHHHHHHH---cCCCcEEEEEECcCcccc
Confidence            99999999999987654331      222222222   223579999999999763

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.65  E-value=1.3e-16  Score=169.05  Aligned_cols=168  Identities=18%  Similarity=0.269  Sum_probs=89.1

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC-CCCCCcc--------Ccee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCccccc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN-TFSPKYK--------RTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCG  129 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~-~f~~~~~--------~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~  129 (592)
                      ...++|+|+|++|||||||+|+|.+. .+...+.        +|+. +.....+..++..+.+++|||+|+++....   
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~---  111 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINC---  111 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCcc---
Confidence            45689999999999999999998754 3433332        3443 333333445677788999999999321100   


Q ss_pred             ccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHH-------HhhhcCCc-----------
Q psy1524         130 AVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA-------LSISSADA-----------  191 (592)
Q Consensus       130 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~-------~~~~~AD~-----------  191 (592)
                                                                   .+.|..+..       .|+..+++           
T Consensus       112 ---------------------------------------------~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv  146 (361)
T 2qag_A          112 ---------------------------------------------RDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRV  146 (361)
T ss_dssp             -------------------------------------------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCC
T ss_pred             ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHhhhhccccccCCce
Confidence                                                         022222222       44444443           


Q ss_pred             EEEEEeCCC-cCCHHHHHH-HHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCC
Q psy1524         192 FILVYAIDD-PNSFEEIRL-IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPD  269 (592)
Q Consensus       192 iIlVyDvsd-~~Sfe~l~~-~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r  269 (592)
                      .++||++++ ..++..+.. ++..+     ..++|+|+|+||+|+...                               +
T Consensus       147 ~~~vy~I~~~~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~~-------------------------------~  190 (361)
T 2qag_A          147 HCCFYFISPFGHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLTL-------------------------------K  190 (361)
T ss_dssp             CEEEEEECSSSSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSCH-------------------------------H
T ss_pred             EEEEEEEecCCCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCCH-------------------------------H
Confidence            357777776 566766653 32222     357899999999999765                               2


Q ss_pred             CCCh--HHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524         270 QVPY--DTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       270 ~Vs~--ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~  313 (592)
                      .+..  +++..++. ..+++++++||++|.| ++.|..+++.+...
T Consensus       191 ev~~~k~~i~~~~~-~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~  234 (361)
T 2qag_A          191 ERERLKKRILDEIE-EHNIKIYHLPDAESDE-DEDFKEQTRLLKAS  234 (361)
T ss_dssp             HHHHHHHHHHHHTT-CC-CCSCCCC----------CHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH-HCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence            2222  34555554 4567899999999999 99999999888543

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.65  E-value=1.4e-15  Score=163.43  Aligned_cols=166  Identities=18%  Similarity=0.223  Sum_probs=108.2

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcC---CCCCCccC--cee-eeEEEEEee-------------C--C----eEEEE
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYN---TFSPKYKR--TIE-EMHHEDFSM-------------N--G----VHLKL  112 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~---~f~~~~~~--Tt~-d~~~~~v~v-------------d--g----~~v~L  112 (592)
                      .+...++|+++|..++|||||+++|++.   .+.....+  |+. .+....+..             +  +    ....+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            3456799999999999999999999944   23333333  433 222222211             1  1    13678


Q ss_pred             EEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcE
Q psy1524         113 DILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAF  192 (592)
Q Consensus       113 ~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~i  192 (592)
                      .||||||+                                                       +.|.......+..+|++
T Consensus        86 ~iiDtPGh-------------------------------------------------------~~f~~~~~~~~~~~D~~  110 (410)
T 1kk1_A           86 SFIDAPGH-------------------------------------------------------EALMTTMLAGASLMDGA  110 (410)
T ss_dssp             EEEECSSH-------------------------------------------------------HHHHHHHHHCGGGCSEE
T ss_pred             EEEECCCh-------------------------------------------------------HHHHHHHHhhhhhCCEE
Confidence            88999999                                                       66766666677889999


Q ss_pred             EEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCC
Q psy1524         193 ILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVP  272 (592)
Q Consensus       193 IlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs  272 (592)
                      |+|+|+++..........+..+...   ...|+|+|+||+|+.+.+..                             ...
T Consensus       111 ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~-----------------------------~~~  158 (410)
T 1kk1_A          111 ILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKA-----------------------------LEN  158 (410)
T ss_dssp             EEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHH-----------------------------HHH
T ss_pred             EEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHH-----------------------------HHH
Confidence            9999999754222222222223222   23589999999999864210                             011


Q ss_pred             hHHHHHHHhh--cCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         273 YDTTESVVQV--DWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       273 ~ee~~~la~~--~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      .++...+++.  ....+++++||++|.||++|++.|.+.+
T Consensus       159 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~  198 (410)
T 1kk1_A          159 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  198 (410)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            2334444432  1356899999999999999999988765

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.64  E-value=5.1e-16  Score=163.16  Aligned_cols=121  Identities=17%  Similarity=0.100  Sum_probs=90.3

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCC----------CcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCC
Q psy1524         176 NEFPAMRALSISSADAFILVYAID----------DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG  245 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvs----------d~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~  245 (592)
                      ++++.++..|+++++++|+|||++          +..++.+...|+..+.......++|+|||+||+|+....-    ..
T Consensus       172 e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki----~~  247 (340)
T 4fid_A          172 RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKL----TK  247 (340)
T ss_dssp             HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHH----HH
T ss_pred             ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhc----Cc
Confidence            999999999999999999999999          7788999988888887764456899999999999976411    00


Q ss_pred             CCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcC--------------------------CCeEEEcccCCCccH
Q psy1524         246 GPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDW--------------------------ENGFVEASAKDNTNI  299 (592)
Q Consensus       246 ~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~--------------------------~~~~~EvSAktg~gV  299 (592)
                      ..+..++.+            .....+.+++..+.....                          .+.+++|||+++.||
T Consensus       248 ~~l~~~fp~------------y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv  315 (340)
T 4fid_A          248 VPLNTIFPE------------YTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNI  315 (340)
T ss_dssp             SCGGGTCTT------------CCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHH
T ss_pred             chHHHhhhh------------hcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHH
Confidence            111111111            112235677765543322                          356899999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1524         300 TQVFKELLVQAKV  312 (592)
Q Consensus       300 eeLf~~Li~~i~~  312 (592)
                      +.+|..+.+.|..
T Consensus       316 ~~vF~~v~~~Il~  328 (340)
T 4fid_A          316 KRVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999876

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.64  E-value=9.1e-16  Score=168.64  Aligned_cols=161  Identities=14%  Similarity=0.165  Sum_probs=107.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCC-------CCCCccC-ceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCccccccc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNT-------FSPKYKR-TIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAV  131 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~-------f~~~~~~-Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~  131 (592)
                      +..++|+++|..++|||||+++|++..       +.....+ .+.+.....+.+++  ..+.||||||+           
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh-----------   83 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGH-----------   83 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSH-----------
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCCh-----------
Confidence            567999999999999999999999765       2222222 22232223345566  45667999999           


Q ss_pred             ccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHH
Q psy1524         132 LWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIR  211 (592)
Q Consensus       132 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l  211 (592)
                                                                  +.|......++..+|++|+|+|+++...-.. ..++
T Consensus        84 --------------------------------------------~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l  118 (482)
T 1wb1_A           84 --------------------------------------------ADLIRAVVSAADIIDLALIVVDAKEGPKTQT-GEHM  118 (482)
T ss_dssp             --------------------------------------------HHHHHHHHHHTTSCCEEEEEEETTTCSCHHH-HHHH
T ss_pred             --------------------------------------------HHHHHHHHHHHhhCCEEEEEEecCCCccHHH-HHHH
Confidence                                                        7777777788999999999999998432221 1222


Q ss_pred             HHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc---CCCeE
Q psy1524         212 DHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD---WENGF  288 (592)
Q Consensus       212 ~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~---~~~~~  288 (592)
                      ..+..    .++|+|+|+||+|+.+...                             .....++...+++..   ...++
T Consensus       119 ~~~~~----~~ip~IvviNK~Dl~~~~~-----------------------------~~~~~~~l~~~l~~~~~~~~~~i  165 (482)
T 1wb1_A          119 LILDH----FNIPIIVVITKSDNAGTEE-----------------------------IKRTEMIMKSILQSTHNLKNSSI  165 (482)
T ss_dssp             HHHHH----TTCCBCEEEECTTSSCHHH-----------------------------HHHHHHHHHHHHHHSSSGGGCCE
T ss_pred             HHHHH----cCCCEEEEEECCCcccchh-----------------------------HHHHHHHHHHHHhhhcccccceE
Confidence            22322    3688899999999975311                             001123334443322   25689


Q ss_pred             EEcccCCCccHHHHHHHHHHHHH
Q psy1524         289 VEASAKDNTNITQVFKELLVQAK  311 (592)
Q Consensus       289 ~EvSAktg~gVeeLf~~Li~~i~  311 (592)
                      +++||++|.||+++++.|.+.+.
T Consensus       166 i~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          166 IPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHhhc
Confidence            99999999999999999998874

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.63  E-value=1.5e-15  Score=162.87  Aligned_cols=136  Identities=14%  Similarity=0.137  Sum_probs=88.1

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCCC----------cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCC
Q psy1524         176 NEFPAMRALSISSADAFILVYAIDD----------PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG  245 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvsd----------~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~  245 (592)
                      ++|+.++..|+++++++|+|||+++          ..+|+++..|+..+.......++|+||||||+||....-.  ...
T Consensus       228 e~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~--~~~  305 (402)
T 1azs_C          228 RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVL--AGK  305 (402)
T ss_dssp             GGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHH--HCS
T ss_pred             hhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhc--ccc
Confidence            8999999999999999999999999          8999999999999877544568999999999999654110  000


Q ss_pred             CCcccccCCCCCccccccC-CCCCCCCChHHHHHHH-----hh-------cCCCeEEEcccCCCccHHHHHHHHHHHHHH
Q psy1524         246 GPFQTYLSGLPDSVCAHQI-SGTPDQVPYDTTESVV-----QV-------DWENGFVEASAKDNTNITQVFKELLVQAKV  312 (592)
Q Consensus       246 ~~~~~~l~~~~~~~~~~~~-~~~~r~Vs~ee~~~la-----~~-------~~~~~~~EvSAktg~gVeeLf~~Li~~i~~  312 (592)
                      ..+..++.+...-..+... .......+.+++..++     +.       ...+.+++|||+++.||+++|..+.+.+..
T Consensus       306 ~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~  385 (402)
T 1azs_C          306 SKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR  385 (402)
T ss_dssp             SCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHH
Confidence            0011111100000000000 0000001245565553     21       124557899999999999999999888865


Q ss_pred             h
Q psy1524         313 K  313 (592)
Q Consensus       313 ~  313 (592)
                      .
T Consensus       386 ~  386 (402)
T 1azs_C          386 M  386 (402)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.63  E-value=9.8e-16  Score=156.12  Aligned_cols=99  Identities=18%  Similarity=0.154  Sum_probs=64.5

Q ss_pred             chhHHHHHhhhcCCcEE-EEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCC
Q psy1524         177 EFPAMRALSISSADAFI-LVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGL  255 (592)
Q Consensus       177 ~~~~l~~~~~~~AD~iI-lVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~  255 (592)
                      .+..+...|+..++.+| +|+|+++..+......++..+    ...+.|+|+|+||+|+.+..                 
T Consensus       150 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~----~~~~~~~i~V~NK~Dl~~~~-----------------  208 (299)
T 2aka_B          150 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV----DPQGQRTIGVITKLDLMDEG-----------------  208 (299)
T ss_dssp             HHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHH----CTTCSSEEEEEECGGGSCTT-----------------
T ss_pred             HHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHh----CCCCCeEEEEEEccccCCCC-----------------
Confidence            56677778888888776 799998765444433344333    23578999999999997651                 


Q ss_pred             CCccccccCCCCCCCCChHHHHHH-Hhhc-CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         256 PDSVCAHQISGTPDQVPYDTTESV-VQVD-WENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       256 ~~~~~~~~~~~~~r~Vs~ee~~~l-a~~~-~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                                    ....+..... .... ...+++++||++|.|++++|+.+.+..
T Consensus       209 --------------~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          209 --------------TDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             --------------CCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             --------------chHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence                          1111111110 0000 123688999999999999999998743

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.63  E-value=2.7e-17  Score=182.61  Aligned_cols=158  Identities=26%  Similarity=0.311  Sum_probs=109.2

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEee-CCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSM-NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~v-dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      +.++|+|+|.+|+|||||+++|++..+...+.+++. +.....+.+ ++.  .++||||||+                  
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~--~i~~iDTPGh------------------   62 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGE--KITFLDTPGH------------------   62 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSS--CCBCEECSSS------------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCC--EEEEEECCCh------------------
Confidence            457899999999999999999997766544444443 333333333 333  4567999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           +.|..++..++..+|++|+|||+++.........+ ..+.   
T Consensus        63 -------------------------------------e~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~---  101 (537)
T 3izy_P           63 -------------------------------------AAFSAMRARGTQVTDIVILVVAADDGVMKQTVESI-QHAK---  101 (537)
T ss_dssp             -------------------------------------CCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHH---
T ss_pred             -------------------------------------HHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHH-HHHH---
Confidence                                                 66666666678899999999999997776554433 2232   


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHH---Hh-hcCCCeEEEcccC
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESV---VQ-VDWENGFVEASAK  294 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~l---a~-~~~~~~~~EvSAk  294 (592)
                       ..++|+|+|+||+|+...+.                             ..+. .+...+   +. .....+++++||+
T Consensus       102 -~~~vPiIVViNKiDl~~~~~-----------------------------~~v~-~~l~~~~~~~e~~~~~~~iv~vSAk  150 (537)
T 3izy_P          102 -DAHVPIVLAINKCDKAEADP-----------------------------EKVK-KELLAYDVVCEDYGGDVQAVHVSAL  150 (537)
T ss_dssp             -TTTCCEEECCBSGGGTTTSC-----------------------------CSSS-SHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred             -HcCCcEEEEEecccccccch-----------------------------HHHH-HHHHhhhhhHHhcCCCceEEEEECC
Confidence             34789999999999975411                             0111 111111   01 1124579999999


Q ss_pred             CCccHHHHHHHHHHHH
Q psy1524         295 DNTNITQVFKELLVQA  310 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i  310 (592)
                      +|.||+++|+.+...+
T Consensus       151 tG~GI~eLle~I~~l~  166 (537)
T 3izy_P          151 TGENMMALAEATIALA  166 (537)
T ss_dssp             SSCSSHHHHHHHHHHH
T ss_pred             CCCCchhHHHHHHHhh
Confidence            9999999999998776

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.62  E-value=3.3e-15  Score=162.31  Aligned_cols=160  Identities=21%  Similarity=0.189  Sum_probs=101.6

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcC--CCCCC-----------------------------c-cCceeeeEEEEEeeC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPK-----------------------------Y-KRTIEEMHHEDFSMN  106 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~-----------------------------~-~~Tt~d~~~~~v~vd  106 (592)
                      ....++|+++|.+|+|||||+++|+..  .+...                             . ...+.+.....+..+
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            356799999999999999999999643  11111                             1 112224444445555


Q ss_pred             CeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhh
Q psy1524         107 GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSI  186 (592)
Q Consensus       107 g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~  186 (592)
                      +  ..+.||||||+                                                       ++|......++
T Consensus        94 ~--~~~~iiDTPGh-------------------------------------------------------~~f~~~~~~~~  116 (439)
T 3j2k_7           94 K--KHFTILDAPGH-------------------------------------------------------KSFVPNMIGGA  116 (439)
T ss_pred             C--eEEEEEECCCh-------------------------------------------------------HHHHHHHHhhH
Confidence            5  46677999999                                                       77888888889


Q ss_pred             hcCCcEEEEEeCCCcCC---HH---HHHHHHHHHHHhhcCCCCC-EEEEEeCCCCcccccccccCCCCcccccCCCCCcc
Q psy1524         187 SSADAFILVYAIDDPNS---FE---EIRLIRDHIFETKASTAVP-IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSV  259 (592)
Q Consensus       187 ~~AD~iIlVyDvsd~~S---fe---~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~  259 (592)
                      ..||++|+|+|+++...   |+   .....+..+..    .++| +|+|+||+|+...+...        ..        
T Consensus       117 ~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~~~~~~--------~~--------  176 (439)
T 3j2k_7          117 SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPTVNWSN--------ER--------  176 (439)
T ss_pred             hhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcccchHH--------HH--------
Confidence            99999999999998642   22   12222222222    2566 99999999996421000        00        


Q ss_pred             ccccCCCCCCCCChHHHHHHHhhcC-----CCeEEEcccCCCccHHHHHH
Q psy1524         260 CAHQISGTPDQVPYDTTESVVQVDW-----ENGFVEASAKDNTNITQVFK  304 (592)
Q Consensus       260 ~~~~~~~~~r~Vs~ee~~~la~~~~-----~~~~~EvSAktg~gVeeLf~  304 (592)
                               .....++...+++...     ..+++++||++|.||+++++
T Consensus       177 ---------~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          177 ---------YEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             ---------HHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence                     0011122333332111     45799999999999999766

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.60  E-value=3.7e-15  Score=160.01  Aligned_cols=115  Identities=20%  Similarity=0.214  Sum_probs=81.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC--------CCCCC----------ccCceeeeEEEEEeeCCeEEEEEEEeCCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN--------TFSPK----------YKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ  121 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~--------~f~~~----------~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~  121 (592)
                      ...++|+++|.+|+|||||+++|++.        .+...          ....+.+.....+..++  ..+.||||||+ 
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~~~iiDtpG~-   85 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGH-   85 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCS-
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC--eEEEEEECCCh-
Confidence            45689999999999999999999963        22210          01112223222333333  55677999999 


Q ss_pred             CCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc
Q psy1524         122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP  201 (592)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~  201 (592)
                                                                            ++|......++..+|++|+|+|+++.
T Consensus        86 ------------------------------------------------------~~f~~~~~~~~~~aD~~ilVvda~~g  111 (405)
T 2c78_A           86 ------------------------------------------------------ADYIKNMITGAAQMDGAILVVSAADG  111 (405)
T ss_dssp             ------------------------------------------------------GGGHHHHHHHHTTCSSEEEEEETTTC
T ss_pred             ------------------------------------------------------HHHHHHHHHHHHHCCEEEEEEECCCC
Confidence                                                                  77777778889999999999999987


Q ss_pred             CCHHHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCcc
Q psy1524         202 NSFEEIRLIRDHIFETKASTAVP-IVVVGNKSDLAD  236 (592)
Q Consensus       202 ~Sfe~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~  236 (592)
                      ... ....++..+...    ++| +|+|+||+|+..
T Consensus       112 ~~~-qt~~~l~~~~~~----~ip~iivviNK~Dl~~  142 (405)
T 2c78_A          112 PMP-QTREHILLARQV----GVPYIVVFMNKVDMVD  142 (405)
T ss_dssp             CCH-HHHHHHHHHHHT----TCCCEEEEEECGGGCC
T ss_pred             CcH-HHHHHHHHHHHc----CCCEEEEEEECccccC
Confidence            654 344555555442    677 899999999974

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.59  E-value=4.7e-15  Score=142.70  Aligned_cols=169  Identities=12%  Similarity=0.125  Sum_probs=99.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceee-eEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEE-MHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d-~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ....+|+|+|++|||||||+|+|++..+...+.++.+. .....+.+++   .+.+|||+|+.....          +. 
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~----------~~-   89 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEV----------PE-   89 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC-----------------
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCccccc----------CH-
Confidence            34579999999999999999999987754444444442 2223334444   355699999821000          00 


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhh---hcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSI---SSADAFILVYAIDDPNSFEEIRLIRDHIF  215 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~---~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~  215 (592)
                                                        ...+.+......++   ..++++++|+|+++..++.... ....+.
T Consensus        90 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-~~~~~~  134 (210)
T 1pui_A           90 ----------------------------------EMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQ-MIEWAV  134 (210)
T ss_dssp             ----------------------------------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHH
T ss_pred             ----------------------------------HHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHH-HHHHHH
Confidence                                              00022333333344   4689999999999887764321 222222


Q ss_pred             HhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc-CCCeEEEcccC
Q psy1524         216 ETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD-WENGFVEASAK  294 (592)
Q Consensus       216 ~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~-~~~~~~EvSAk  294 (592)
                      .    .++|+++|+||+|+.....                             ++...+.+..++... ....++++||+
T Consensus       135 ~----~~~~~~~v~nK~D~~s~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sal  181 (210)
T 1pui_A          135 D----SNIAVLVLLTKADKLASGA-----------------------------RKAQLNMVREAVLAFNGDVQVETFSSL  181 (210)
T ss_dssp             H----TTCCEEEEEECGGGSCHHH-----------------------------HHHHHHHHHHHHGGGCSCEEEEECBTT
T ss_pred             H----cCCCeEEEEecccCCCchh-----------------------------HHHHHHHHHHHHHhcCCCCceEEEeec
Confidence            2    3689999999999875411                             111123444444322 23568899999


Q ss_pred             CCccHHHHHHHHHHHH
Q psy1524         295 DNTNITQVFKELLVQA  310 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i  310 (592)
                      ++.|++++++.+.+.+
T Consensus       182 ~~~~~~~l~~~l~~~~  197 (210)
T 1pui_A          182 KKQGVDKLRQKLDTWF  197 (210)
T ss_dssp             TTBSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999988765

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.58  E-value=1.2e-14  Score=161.34  Aligned_cols=115  Identities=18%  Similarity=0.276  Sum_probs=82.0

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcC------------------CCCCC-----ccCceeeeEEEEEeeCCeEEEEEEEeC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYN------------------TFSPK-----YKRTIEEMHHEDFSMNGVHLKLDILDT  117 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~------------------~f~~~-----~~~Tt~d~~~~~v~vdg~~v~L~I~DT  117 (592)
                      ...+|+|+|.+|||||||+++|+..                  .+.+.     ....+.......+..++  +.++||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT   89 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT   89 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence            4579999999999999999999611                  11000     01111122223344454  56777999


Q ss_pred             CCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEe
Q psy1524         118 SGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYA  197 (592)
Q Consensus       118 ~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyD  197 (592)
                      ||+                                                       +.|......+++.+|++|+|+|
T Consensus        90 PG~-------------------------------------------------------~df~~~~~~~l~~aD~allVvD  114 (528)
T 3tr5_A           90 PGH-------------------------------------------------------ADFTEDTYRTLTAVDSALMVID  114 (528)
T ss_dssp             CCS-------------------------------------------------------TTCCHHHHHGGGGCSEEEEEEE
T ss_pred             CCc-------------------------------------------------------hhHHHHHHHHHHhCCEEEEEEe
Confidence            999                                                       6677778888999999999999


Q ss_pred             CCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         198 IDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       198 vsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      +++..+......| ..+..    .++|+|+|+||+|+...
T Consensus       115 a~~g~~~~t~~~~-~~~~~----~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A          115 AAKGVEPRTIKLM-EVCRL----RHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             TTTCSCHHHHHHH-HHHHT----TTCCEEEEEECTTSCCS
T ss_pred             CCCCCCHHHHHHH-HHHHH----cCCCEEEEEeCCCCccc
Confidence            9998887776644 33333    37899999999999754

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.57  E-value=1.2e-15  Score=165.43  Aligned_cols=162  Identities=21%  Similarity=0.247  Sum_probs=102.3

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC--CCCCCc------------------------------cCceeeeEEEEEeeCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPKY------------------------------KRTIEEMHHEDFSMNG  107 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~~------------------------------~~Tt~d~~~~~v~vdg  107 (592)
                      ...++|+++|..|+|||||+++|+..  .+....                              ...+.+.....+.  .
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~--~   81 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE--T   81 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE--C
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe--c
Confidence            35689999999999999999999864  333111                              1111122222233  3


Q ss_pred             eEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh
Q psy1524         108 VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS  187 (592)
Q Consensus       108 ~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~  187 (592)
                      ..+.+.||||||+                                                       ++|......++.
T Consensus        82 ~~~~~~iiDtpG~-------------------------------------------------------~~f~~~~~~~~~  106 (435)
T 1jny_A           82 KKYFFTIIDAPGH-------------------------------------------------------RDFVKNMITGAS  106 (435)
T ss_dssp             SSCEEEECCCSSS-------------------------------------------------------TTHHHHHHHTSS
T ss_pred             CCeEEEEEECCCc-------------------------------------------------------HHHHHHHHhhhh
Confidence            3356778999999                                                       778878888899


Q ss_pred             cCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh---cCCC-CCEEEEEeCCCCcccccccccCCCCcccccCCCCCcccccc
Q psy1524         188 SADAFILVYAIDDPNSFEEIRLIRDHIFETK---ASTA-VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQ  263 (592)
Q Consensus       188 ~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~---~~~~-~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  263 (592)
                      .+|++|+|||+++ .+|+.+..|..+..++.   ...+ .|+|+|+||+|+.+.+...        ..            
T Consensus       107 ~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~--------~~------------  165 (435)
T 1jny_A          107 QADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE--------KR------------  165 (435)
T ss_dssp             CCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH--------HH------------
T ss_pred             hcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH--------HH------------
Confidence            9999999999998 77876543322222211   1123 4699999999997631000        00            


Q ss_pred             CCCCCCCCChHHHHHHHhhcC----CCeEEEcccCCCccHHHHHH
Q psy1524         264 ISGTPDQVPYDTTESVVQVDW----ENGFVEASAKDNTNITQVFK  304 (592)
Q Consensus       264 ~~~~~r~Vs~ee~~~la~~~~----~~~~~EvSAktg~gVeeLf~  304 (592)
                           .....++...+++...    ..+++++||++|.||.++++
T Consensus       166 -----~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          166 -----YKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             -----HHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             -----HHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence                 0011234445544322    36799999999999987654

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.57  E-value=2.3e-15  Score=169.31  Aligned_cols=115  Identities=23%  Similarity=0.266  Sum_probs=76.2

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCc----cCceeeeEEEEE-------------eeCCeEEEEEEEeCCCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKY----KRTIEEMHHEDF-------------SMNGVHLKLDILDTSGEQS  122 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~----~~Tt~d~~~~~v-------------~vdg~~v~L~I~DT~G~~~  122 (592)
                      .+.++|+|+|.+|+|||||+++|++..+.+..    ..+++..+...-             .++.....++||||||+  
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGh--   80 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH--   80 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT--
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCc--
Confidence            34579999999999999999999976554322    123222111100             00011124778999999  


Q ss_pred             CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCC--
Q psy1524         123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDD--  200 (592)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd--  200 (592)
                                                                           +.|..++..++..+|++|+|||+++  
T Consensus        81 -----------------------------------------------------e~F~~~~~r~~~~aD~aILVvDa~~Gv  107 (594)
T 1g7s_A           81 -----------------------------------------------------EAFTTLRKRGGALADLAILIVDINEGF  107 (594)
T ss_dssp             -----------------------------------------------------SCCTTSBCSSSBSCSEEEEEEETTTCC
T ss_pred             -----------------------------------------------------HHHHHHHHHHHhhCCEEEEEEECCCCc
Confidence                                                                 5555555556788999999999999  


Q ss_pred             -cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         201 -PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       201 -~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                       +.+++.+.    .+..    .++|+|+|+||+|+...
T Consensus       108 ~~qT~e~l~----~l~~----~~vPiIVViNKiDl~~~  137 (594)
T 1g7s_A          108 KPQTQEALN----ILRM----YRTPFVVAANKIDRIHG  137 (594)
T ss_dssp             CHHHHHHHH----HHHH----TTCCEEEEEECGGGSTT
T ss_pred             cHhHHHHHH----HHHH----cCCeEEEEecccccccc
Confidence             44444433    2322    37899999999999753

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.57  E-value=7.6e-15  Score=159.06  Aligned_cols=158  Identities=21%  Similarity=0.134  Sum_probs=100.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCC--CCCC----------ccCcee----------------------eeEEEEEee
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNT--FSPK----------YKRTIE----------------------EMHHEDFSM  105 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~--f~~~----------~~~Tt~----------------------d~~~~~v~v  105 (592)
                      ...++|+++|..|+|||||+++|+...  +...          ..+|++                      +.....+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            456899999999999999999998553  1111          112221                      111122222


Q ss_pred             CCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHh
Q psy1524         106 NGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALS  185 (592)
Q Consensus       106 dg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~  185 (592)
                      ++  ..+.||||||+                                                       +.|......+
T Consensus       102 ~~--~~~~iiDtpGh-------------------------------------------------------~~f~~~~~~~  124 (434)
T 1zun_B          102 AK--RKFIIADTPGH-------------------------------------------------------EQYTRNMATG  124 (434)
T ss_dssp             SS--EEEEEEECCCS-------------------------------------------------------GGGHHHHHHH
T ss_pred             CC--ceEEEEECCCh-------------------------------------------------------HHHHHHHHHH
Confidence            33  56778999999                                                       7787777788


Q ss_pred             hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524         186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS  265 (592)
Q Consensus       186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  265 (592)
                      +..+|++|+|+|+++..... ...++..+...   ...|+|+|+||+|+.+.+...                        
T Consensus       125 ~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~------------------------  176 (434)
T 1zun_B          125 ASTCDLAIILVDARYGVQTQ-TRRHSYIASLL---GIKHIVVAINKMDLNGFDERV------------------------  176 (434)
T ss_dssp             HTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHH------------------------
T ss_pred             HhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHH------------------------
Confidence            99999999999999876433 33444434332   123699999999997531000                        


Q ss_pred             CCCCCCChHHHHHHHhhcC----CCeEEEcccCCCccHHHHHHH
Q psy1524         266 GTPDQVPYDTTESVVQVDW----ENGFVEASAKDNTNITQVFKE  305 (592)
Q Consensus       266 ~~~r~Vs~ee~~~la~~~~----~~~~~EvSAktg~gVeeLf~~  305 (592)
                         .....++...+++...    ..+++++||++|.||+++|+.
T Consensus       177 ---~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~  217 (434)
T 1zun_B          177 ---FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER  217 (434)
T ss_dssp             ---HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred             ---HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence               0001233444444222    267999999999999986543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.57  E-value=8.5e-15  Score=155.76  Aligned_cols=149  Identities=7%  Similarity=0.025  Sum_probs=104.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV  143 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~  143 (592)
                      +|+++|.+++|||||+++|+      ....|+ +.....+..++.  .++||||||+                       
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~------~~giTi-~~~~~~~~~~~~--~i~iiDtPGh-----------------------   70 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG------KKGTSS-DITMYNNDKEGR--NMVFVDAHSY-----------------------   70 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS------EEEEES-SSEEEEECSSSS--EEEEEECTTT-----------------------
T ss_pred             EEEEECCCCCCHHHHHHHHH------hCCEEE-EeeEEEEecCCe--EEEEEECCCh-----------------------
Confidence            99999999999999999998      112222 333344444554  4677999999                       


Q ss_pred             HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524         144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV  223 (592)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~  223 (592)
                                                      ++|.......+..+|++|+|+| + ...+.....++..+...    ++
T Consensus        71 --------------------------------~~f~~~~~~~~~~aD~ailVvd-~-~g~~~qt~e~~~~~~~~----~i  112 (370)
T 2elf_A           71 --------------------------------PKTLKSLITALNISDIAVLCIP-P-QGLDAHTGECIIALDLL----GF  112 (370)
T ss_dssp             --------------------------------TTCHHHHHHHHHTCSEEEEEEC-T-TCCCHHHHHHHHHHHHT----TC
T ss_pred             --------------------------------HHHHHHHHHHHHHCCEEEEEEc-C-CCCcHHHHHHHHHHHHc----CC
Confidence                                            6676666677899999999999 4 44556666666655443    56


Q ss_pred             CE-EEEEe-CCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc--CCCeEEE--cccCC--
Q psy1524         224 PI-VVVGN-KSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD--WENGFVE--ASAKD--  295 (592)
Q Consensus       224 PI-ILVgN-K~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~--~~~~~~E--vSAkt--  295 (592)
                      |. |+|+| |+|+ +... .                            ....++...+++..  ...++++  +||++  
T Consensus       113 ~~~ivvvNNK~Dl-~~~~-~----------------------------~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~  162 (370)
T 2elf_A          113 KHGIIALTRSDST-HMHA-I----------------------------DELKAKLKVITSGTVLQDWECISLNTNKSAKN  162 (370)
T ss_dssp             CEEEEEECCGGGS-CHHH-H----------------------------HHHHHHHHHHTTTSTTTTCEEEECCCCTTSSS
T ss_pred             CeEEEEEEeccCC-CHHH-H----------------------------HHHHHHHHHHHHhcCCCceEEEecccccccCc
Confidence            77 89999 9999 4310 0                            00013344444322  2468999  99999  


Q ss_pred             -CccHHHHHHHHHHHHHH
Q psy1524         296 -NTNITQVFKELLVQAKV  312 (592)
Q Consensus       296 -g~gVeeLf~~Li~~i~~  312 (592)
                       |.||+++++.|.+.+..
T Consensus       163 ~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          163 PFEGVDELKARINEVAEK  180 (370)
T ss_dssp             TTTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhhccc
Confidence             99999999999888743

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.56  E-value=1.1e-14  Score=156.12  Aligned_cols=160  Identities=15%  Similarity=0.103  Sum_probs=104.9

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcC-------CCCCC----------ccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYN-------TFSPK----------YKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSG  123 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~-------~f~~~----------~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~  123 (592)
                      ..+||+++|..++|||||+++|++.       .+...          ....+.+...  +.++.....+.||||||+   
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~--~~~~~~~~~~~iiDtpG~---   76 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAH--VEYSTAARHYAHTDCPGH---   76 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEE--EEEECSSCEEEEEECSSH---
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeee--EEeccCCeEEEEEECCCh---
Confidence            3589999999999999999999963       11110          0111112222  223333356677999999   


Q ss_pred             CcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCC
Q psy1524         124 KGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNS  203 (592)
Q Consensus       124 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~S  203 (592)
                                                                          ++|......++..+|++|+|+|+++...
T Consensus        77 ----------------------------------------------------~~f~~~~~~~~~~aD~~ilVvda~~g~~  104 (397)
T 1d2e_A           77 ----------------------------------------------------ADYVKNMITGTAPLDGCILVVAANDGPM  104 (397)
T ss_dssp             ----------------------------------------------------HHHHHHHHHTSSCCSEEEEEEETTTCSC
T ss_pred             ----------------------------------------------------HHHHHHHHhhHhhCCEEEEEEECCCCCC
Confidence                                                                7777777778899999999999998765


Q ss_pred             HHHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh
Q psy1524         204 FEEIRLIRDHIFETKASTAVP-IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV  282 (592)
Q Consensus       204 fe~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~  282 (592)
                      ..... ++..+..    .++| +|+|+||+|+.++....                            ....++...+++.
T Consensus       105 ~qt~e-~l~~~~~----~~vp~iivviNK~Dl~~~~~~~----------------------------~~~~~~~~~~l~~  151 (397)
T 1d2e_A          105 PQTRE-HLLLARQ----IGVEHVVVYVNKADAVQDSEMV----------------------------ELVELEIRELLTE  151 (397)
T ss_dssp             HHHHH-HHHHHHH----TTCCCEEEEEECGGGCSCHHHH----------------------------HHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHH----cCCCeEEEEEECcccCCCHHHH----------------------------HHHHHHHHHHHHH
Confidence            44433 3333433    2678 78999999997421000                            0012334444443


Q ss_pred             cC----CCeEEEcccCCCcc----------HHHHHHHHHHHH
Q psy1524         283 DW----ENGFVEASAKDNTN----------ITQVFKELLVQA  310 (592)
Q Consensus       283 ~~----~~~~~EvSAktg~g----------VeeLf~~Li~~i  310 (592)
                      ..    ..+++++||++|.|          |+++|+.+.+.+
T Consensus       152 ~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          152 FGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             TTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             cCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence            22    36899999999875          888888887655

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.56  E-value=3.3e-15  Score=168.64  Aligned_cols=161  Identities=19%  Similarity=0.220  Sum_probs=98.2

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCC--CC------------------------------ccCceeeeEEEEEeeC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PK------------------------------YKRTIEEMHHEDFSMN  106 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~------------------------------~~~Tt~d~~~~~v~vd  106 (592)
                      ....+||+|+|.+|||||||+++|+.....  ..                              ...++.+.....+..+
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            345799999999999999999999965321  10                              0122223333334444


Q ss_pred             CeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhh
Q psy1524         107 GVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSI  186 (592)
Q Consensus       107 g~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~  186 (592)
                      +  +.+.||||||+                                                       ++|......++
T Consensus       244 ~--~~~~iiDTPG~-------------------------------------------------------e~f~~~~~~~~  266 (611)
T 3izq_1          244 R--ANFTIVDAPGH-------------------------------------------------------RDFVPNAIMGI  266 (611)
T ss_dssp             S--CEEEEEECCSS-------------------------------------------------------SCHHHHHTTTS
T ss_pred             C--ceEEEEECCCC-------------------------------------------------------cccHHHHHHHH
Confidence            4  45677999999                                                       77777777788


Q ss_pred             hcCCcEEEEEeCCCcC---CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCcccccc
Q psy1524         187 SSADAFILVYAIDDPN---SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQ  263 (592)
Q Consensus       187 ~~AD~iIlVyDvsd~~---Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  263 (592)
                      ..||++|+|+|+++..   +|.....+...+.........|+|||+||+|+.+.....                      
T Consensus       267 ~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~----------------------  324 (611)
T 3izq_1          267 SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR----------------------  324 (611)
T ss_dssp             SCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH----------------------
T ss_pred             hhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHH----------------------
Confidence            9999999999998742   111111111111111111234599999999997631000                      


Q ss_pred             CCCCCCCCChHHHHHHHhhc-C---CCeEEEcccCCCccHHHHH
Q psy1524         264 ISGTPDQVPYDTTESVVQVD-W---ENGFVEASAKDNTNITQVF  303 (592)
Q Consensus       264 ~~~~~r~Vs~ee~~~la~~~-~---~~~~~EvSAktg~gVeeLf  303 (592)
                           .....++...++... .   ..++++|||++|.||+++.
T Consensus       325 -----~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~  363 (611)
T 3izq_1          325 -----FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE  363 (611)
T ss_dssp             -----HHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred             -----HHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence                 000012222222211 1   4689999999999999873

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.56  E-value=4.2e-16  Score=171.71  Aligned_cols=156  Identities=27%  Similarity=0.369  Sum_probs=101.5

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      +..+|+++|..++|||||+++|.+..+.....+++. +.....+..++.  .++||||||+                   
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~--~i~~iDTPGh-------------------   61 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG--MITFLDTPGH-------------------   61 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSS--CCCEECCCTT-------------------
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCE--EEEEEECCCc-------------------
Confidence            457999999999999999999997655433322222 222223344554  4566999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc---CCHHHHHHHHHHHHH
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP---NSFEEIRLIRDHIFE  216 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~---~Sfe~l~~~l~~L~~  216 (592)
                                                          +.|..++..++..+|++|+|||+++.   .+++.+.    .+..
T Consensus        62 ------------------------------------e~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~----~~~~  101 (501)
T 1zo1_I           62 ------------------------------------AAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQ----HAKA  101 (501)
T ss_dssp             ------------------------------------TCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHH----HHHH
T ss_pred             ------------------------------------HHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHH----HHHh
Confidence                                                55555555567889999999999884   4444332    2222


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh-hcCCCeEEEcccCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ-VDWENGFVEASAKD  295 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~-~~~~~~~~EvSAkt  295 (592)
                          .++|+|+|+||+|+...+..      .....+...              ..       ++. .....+++++||++
T Consensus       102 ----~~vPiIVviNKiDl~~~~~~------~v~~~l~~~--------------~~-------~~~~~~~~~~~v~vSAkt  150 (501)
T 1zo1_I          102 ----AQVPVVVAVNKIDKPEADPD------RVKNELSQY--------------GI-------LPEEWGGESQFVHVSAKA  150 (501)
T ss_dssp             ----TTCCEEEEEECSSSSTTCCC------CTTCCCCCC--------------CC-------CTTCCSSSCEEEECCTTT
T ss_pred             ----cCceEEEEEEeccccccCHH------HHHHHHHHh--------------hh-------hHHHhCCCccEEEEeeee
Confidence                36899999999999754110      000001000              00       001 01246899999999


Q ss_pred             CccHHHHHHHHHH
Q psy1524         296 NTNITQVFKELLV  308 (592)
Q Consensus       296 g~gVeeLf~~Li~  308 (592)
                      |.||+++|+.++.
T Consensus       151 G~gI~eLle~I~~  163 (501)
T 1zo1_I          151 GTGIDELLDAILL  163 (501)
T ss_dssp             CTTCTTHHHHTTT
T ss_pred             ccCcchhhhhhhh
Confidence            9999999998864

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.56  E-value=6e-16  Score=159.94  Aligned_cols=135  Identities=21%  Similarity=0.134  Sum_probs=107.1

Q ss_pred             HHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCcc
Q psy1524          77 SIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMA  155 (592)
Q Consensus        77 SLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~  155 (592)
                      +|+.+|+.+.|. +.+.+|+++.+...+..++   .+++|||  +                                   
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--q-----------------------------------   71 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--L-----------------------------------   71 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--C-----------------------------------
T ss_pred             cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--c-----------------------------------
Confidence            799999999998 8999999987765443333   5678999  6                                   


Q ss_pred             ccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC-CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCC
Q psy1524         156 YKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN-SFEEIRLIRDHIFETKASTAVPIVVVGNKSDL  234 (592)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL  234 (592)
                                          ++|+.++..+++++|++|+|||++++. +|..+..|+..+..    .++|+|||+||+||
T Consensus        72 --------------------er~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL  127 (301)
T 1u0l_A           72 --------------------HRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDL  127 (301)
T ss_dssp             --------------------CCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGG
T ss_pred             --------------------cccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHc
Confidence                                778888888999999999999999997 79999999887754    37899999999999


Q ss_pred             cccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCC-CeEEEcccCCCccHHHHHHHHHH
Q psy1524         235 ADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWE-NGFVEASAKDNTNITQVFKELLV  308 (592)
Q Consensus       235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~-~~~~EvSAktg~gVeeLf~~Li~  308 (592)
                      .++                               +.+  +++..+++.... ..+++|||++|.||+++|..+..
T Consensus       128 ~~~-------------------------------~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          128 YDE-------------------------------DDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             CCH-------------------------------HHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             CCc-------------------------------hhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            754                               111  334444442221 78999999999999999987653

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.55  E-value=4.3e-14  Score=142.67  Aligned_cols=127  Identities=17%  Similarity=0.180  Sum_probs=85.2

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ...++|+|+|.+|||||||+|+|++..+  ...+.+++.+.....+..++.  .+.||||||+.+...            
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~------------   99 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGY------------   99 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTE------------
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCccc------------
Confidence            4579999999999999999999998764  455666666666666777775  566699999921100            


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhh--hcCCcEEEEEeCCCcCCHHHH-HHHHHHH
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSI--SSADAFILVYAIDDPNSFEEI-RLIRDHI  214 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~--~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L  214 (592)
                                                          ..+.+......++  .++|++|+|+|+++.. +... ..|+..+
T Consensus       100 ------------------------------------~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l  142 (262)
T 3def_A          100 ------------------------------------VNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAI  142 (262)
T ss_dssp             ------------------------------------ECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHH
T ss_pred             ------------------------------------chHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHH
Confidence                                                0011111111111  3789999999998765 4433 4677777


Q ss_pred             HHhhcC-CCCCEEEEEeCCCCccc
Q psy1524         215 FETKAS-TAVPIVVVGNKSDLADE  237 (592)
Q Consensus       215 ~~~~~~-~~~PIILVgNK~DL~~~  237 (592)
                      .+.... ...|+++|+||+|+...
T Consensus       143 ~~~~~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          143 TQTFGKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             HHHHCGGGGGGEEEEEECTTCCCS
T ss_pred             HHHhchhhhcCEEEEEeCcccCCC
Confidence            665321 12499999999998644

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.52  E-value=1.1e-13  Score=158.47  Aligned_cols=54  Identities=17%  Similarity=0.251  Sum_probs=42.5

Q ss_pred             HHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         180 AMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       180 ~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      .+...++..||++|+|+|+++..+..+...|...+..    .+.|+++|+||+|+...
T Consensus       192 ~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----~~~~iiiVlNK~Dl~~~  245 (695)
T 2j69_A          192 ELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG----RGLTVFFLVNAWDQVRE  245 (695)
T ss_dssp             HHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT----SCCCEEEEEECGGGGGG
T ss_pred             HHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh----hCCCEEEEEECcccccc
Confidence            4455678999999999999999888887766544422    36789999999999754

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.51  E-value=1.6e-13  Score=140.97  Aligned_cols=58  Identities=16%  Similarity=0.180  Sum_probs=39.0

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCCCcC-CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         176 NEFPAMRALSISSADAFILVYAIDDPN-SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      +.+..+...++..+|++|+|+|.++.. .......+...+    ...+.|+|+|+||+|+...
T Consensus       155 ~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~----~~~~~~~i~v~NK~Dl~~~  213 (315)
T 1jwy_B          155 QQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV----DPEGKRTIGVITKLDLMDK  213 (315)
T ss_dssp             HHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH----CSSCSSEEEEEECTTSSCS
T ss_pred             HHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh----CCCCCcEEEEEcCcccCCc
Confidence            346667778899999999999985432 111111222222    2357899999999999765

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.50  E-value=4.6e-14  Score=148.99  Aligned_cols=99  Identities=13%  Similarity=0.091  Sum_probs=65.1

Q ss_pred             chhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCC
Q psy1524         177 EFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLP  256 (592)
Q Consensus       177 ~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~  256 (592)
                      ....+...|+.++|++|+|+|.++.....  ..|+..+... ...+.|+|+|+||+|+.+.                   
T Consensus       161 ~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~-~~~~~~~i~V~nK~Dl~~~-------------------  218 (360)
T 3t34_A          161 DIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREV-DPSGDRTFGVLTKIDLMDK-------------------  218 (360)
T ss_dssp             HHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHS-CTTCTTEEEEEECGGGCCT-------------------
T ss_pred             HHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHh-cccCCCEEEEEeCCccCCC-------------------
Confidence            34567778899999999999976544322  2333333333 3457899999999999865                   


Q ss_pred             CccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         257 DSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       257 ~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                                  .....+.+..+. .....+|+++|++++.++++.+..+....
T Consensus       219 ------------~~~~~~~~~~~~-~~~~~~~~~v~~~s~~~i~~~~~~~~~~~  259 (360)
T 3t34_A          219 ------------GTDAVEILEGRS-FKLKYPWVGVVNRSQADINKNVDMIAARK  259 (360)
T ss_dssp             ------------TCCSHHHHTTSS-SCCSSCCEEECCCCHHHHHTTCCHHHHHH
T ss_pred             ------------cccHHHHHcCcc-ccccCCeEEEEECChHHhccCCCHHHHHH
Confidence                        222223232222 24467799999999999998776554443

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.50  E-value=1e-14  Score=159.22  Aligned_cols=155  Identities=20%  Similarity=0.217  Sum_probs=98.2

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC--CCCCC------------------------------ccCceeeeEEEEEeeCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPK------------------------------YKRTIEEMHHEDFSMNG  107 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~------------------------------~~~Tt~d~~~~~v~vdg  107 (592)
                      ...++|+++|.+|+|||||+++|+..  .+...                              ....+.+.....+..++
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            45689999999999999999999854  22210                              01111122222333344


Q ss_pred             eEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh
Q psy1524         108 VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS  187 (592)
Q Consensus       108 ~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~  187 (592)
                        ..+.||||||+                                                       ++|......++.
T Consensus        85 --~~~~iiDtPGh-------------------------------------------------------~~f~~~~~~~~~  107 (458)
T 1f60_A           85 --YQVTVIDAPGH-------------------------------------------------------RDFIKNMITGTS  107 (458)
T ss_dssp             --EEEEEEECCCC-------------------------------------------------------TTHHHHHHHSSS
T ss_pred             --ceEEEEECCCc-------------------------------------------------------HHHHHHHHhhhh
Confidence              56778999999                                                       778777788899


Q ss_pred             cCCcEEEEEeCCCcC---CHH---HHHHHHHHHHHhhcCCCCC-EEEEEeCCCCcccccccccCCCCcccccCCCCCccc
Q psy1524         188 SADAFILVYAIDDPN---SFE---EIRLIRDHIFETKASTAVP-IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVC  260 (592)
Q Consensus       188 ~AD~iIlVyDvsd~~---Sfe---~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~  260 (592)
                      .+|++|+|+|+++..   +|+   ....++..+..    .++| +|+|+||+|+.+.+...                   
T Consensus       108 ~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~~~~~~-------------------  164 (458)
T 1f60_A          108 QADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKWDESR-------------------  164 (458)
T ss_dssp             CCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTTCHHH-------------------
T ss_pred             hCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccccCCHHH-------------------
Confidence            999999999998753   221   22222322222    2455 99999999997421000                   


Q ss_pred             cccCCCCCCCCChHHHHHHHhhcC----CCeEEEcccCCCccHHHH
Q psy1524         261 AHQISGTPDQVPYDTTESVVQVDW----ENGFVEASAKDNTNITQV  302 (592)
Q Consensus       261 ~~~~~~~~r~Vs~ee~~~la~~~~----~~~~~EvSAktg~gVeeL  302 (592)
                              .....++...+++...    ..+++++||++|.||+++
T Consensus       165 --------~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          165 --------FQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             --------HHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             --------HHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence                    0011233444433222    368999999999999765

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.50  E-value=1.3e-14  Score=149.94  Aligned_cols=175  Identities=15%  Similarity=0.194  Sum_probs=82.0

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC-CCCCCc--------cCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCccccc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN-TFSPKY--------KRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCG  129 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~-~f~~~~--------~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~  129 (592)
                      ...++|+|+|++|||||||+++|.+. .+....        .+++. ......+..++..+.+++|||+|+....     
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~-----   90 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAI-----   90 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhc-----
Confidence            55699999999999999999998865 444332        12222 1222233345666789999999982110     


Q ss_pred             ccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhc-------------CCcEEEEE
Q psy1524         130 AVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISS-------------ADAFILVY  196 (592)
Q Consensus       130 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~-------------AD~iIlVy  196 (592)
                         .....+  ..  +.                             +........++..             +++++++.
T Consensus        91 ---~~~e~~--~~--l~-----------------------------~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ld  134 (301)
T 2qnr_A           91 ---NCRDCF--KT--II-----------------------------SYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFI  134 (301)
T ss_dssp             --------C--TT--HH-----------------------------HHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEE
T ss_pred             ---CcHHHH--HH--HH-----------------------------HHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeee
Confidence               000000  00  00                             0000001122222             23333333


Q ss_pred             eCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHH
Q psy1524         197 AIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTT  276 (592)
Q Consensus       197 Dvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~  276 (592)
                      +.+ ..+++.+..  ..+...  ..+.++++|+||+|+.....                             ..+..+++
T Consensus       135 ePt-~~~Ld~~~~--~~l~~l--~~~~~iilV~~K~Dl~~~~e-----------------------------~~~~~~~~  180 (301)
T 2qnr_A          135 SPF-GHGLKPLDV--AFMKAI--HNKVNIVPVIAKADTLTLKE-----------------------------RERLKKRI  180 (301)
T ss_dssp             CSS-SSSCCHHHH--HHHHHH--TTTSCEEEEECCGGGSCHHH-----------------------------HHHHHHHH
T ss_pred             cCc-ccCCCHHHH--HHHHHH--HhcCCEEEEEEeCCCCCHHH-----------------------------HHHHHHHH
Confidence            322 224555442  334333  24679999999999975410                             11223566


Q ss_pred             HHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524         277 ESVVQVDWENGFVEASAKDNTNITQVFKELLVQAK  311 (592)
Q Consensus       277 ~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~  311 (592)
                      ..+++ ..++.++++||++| |++++|..+++.+.
T Consensus       181 ~~~~~-~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~  213 (301)
T 2qnr_A          181 LDEIE-EHNIKIYHLPDAES-DEDEDFKEQTRLLK  213 (301)
T ss_dssp             HHHHH-HTTCCCCCCC----------CHHHHHHHH
T ss_pred             HHHHH-HcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence            66666 44678999999999 99999999999884

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.50  E-value=7.3e-15  Score=160.83  Aligned_cols=161  Identities=19%  Similarity=0.226  Sum_probs=89.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc--CCCCC------------------------C------ccCceeeeEEEEEeeCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY--NTFSP------------------------K------YKRTIEEMHHEDFSMNG  107 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~--~~f~~------------------------~------~~~Tt~d~~~~~v~vdg  107 (592)
                      ...++|+++|..++|||||+++|+.  +.+.+                        +      ....+.+.....+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            4568999999999999999999974  22211                        0      00111111122334454


Q ss_pred             eEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh
Q psy1524         108 VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS  187 (592)
Q Consensus       108 ~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~  187 (592)
                        ..+.||||||+                                                       +.|......++.
T Consensus       121 --~~~~iiDtPGh-------------------------------------------------------~~f~~~~~~~~~  143 (467)
T 1r5b_A          121 --RRFSLLDAPGH-------------------------------------------------------KGYVTNMINGAS  143 (467)
T ss_dssp             --EEEEECCCCC------------------------------------------------------------------TT
T ss_pred             --eEEEEEECCCc-------------------------------------------------------HHHHHHHHhhcc
Confidence              45677999999                                                       667666677789


Q ss_pred             cCCcEEEEEeCCCc---CCHHHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCcccccccccCCCCcccccCCCCCcccccc
Q psy1524         188 SADAFILVYAIDDP---NSFEEIRLIRDHIFETKASTAVP-IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQ  263 (592)
Q Consensus       188 ~AD~iIlVyDvsd~---~Sfe~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  263 (592)
                      .+|++|+|+|+++.   .+|+....+...+... ...++| +|+|+||+|+.......        ..            
T Consensus       144 ~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~~~vp~iivviNK~Dl~~~~~~~--------~~------------  202 (467)
T 1r5b_A          144 QADIGVLVISARRGEFEAGFERGGQTREHAVLA-RTQGINHLVVVINKMDEPSVQWSE--------ER------------  202 (467)
T ss_dssp             SCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HHTTCSSEEEEEECTTSTTCSSCH--------HH------------
T ss_pred             cCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HHcCCCEEEEEEECccCCCccccH--------HH------------
Confidence            99999999999986   2343222222222211 123566 99999999996420000        00            


Q ss_pred             CCCCCCCCChHHHHHHHhhc--C----CCeEEEcccCCCccHHHHH
Q psy1524         264 ISGTPDQVPYDTTESVVQVD--W----ENGFVEASAKDNTNITQVF  303 (592)
Q Consensus       264 ~~~~~r~Vs~ee~~~la~~~--~----~~~~~EvSAktg~gVeeLf  303 (592)
                           .....++...+++..  .    ..+++++||++|.||+++|
T Consensus       203 -----~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          203 -----YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             -----HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             -----HHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                 001122344444322  1    4679999999999999876

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.48  E-value=3.9e-14  Score=167.14  Aligned_cols=165  Identities=16%  Similarity=0.118  Sum_probs=105.8

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcC-------CCCC-------CccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYN-------TFSP-------KYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQS  122 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~-------~f~~-------~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~  122 (592)
                      .....++|+++|..++|||||+++|++.       .+..       ....+.+ +.....+.++.....++||||||+  
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGH--  369 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGH--  369 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCH--
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCCh--
Confidence            3456799999999999999999999863       1110       0001111 000011223334456778999999  


Q ss_pred             CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC
Q psy1524         123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN  202 (592)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~  202 (592)
                                                                           ++|......++..+|++|+|+|+++..
T Consensus       370 -----------------------------------------------------edF~~~mi~gas~AD~aILVVDAtdGv  396 (1289)
T 3avx_A          370 -----------------------------------------------------ADYVKNMITGAAQMDGAILVVAATDGP  396 (1289)
T ss_dssp             -----------------------------------------------------HHHHHHHHHTSCCCSEEEEEEETTTCS
T ss_pred             -----------------------------------------------------HHHHHHHHHHHhhCCEEEEEEcCCccC
Confidence                                                                 778777778899999999999999875


Q ss_pred             CHHHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh
Q psy1524         203 SFEEIRLIRDHIFETKASTAVP-IVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ  281 (592)
Q Consensus       203 Sfe~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~  281 (592)
                      ... ...++..+...    ++| +|+|+||+|+.++....                            ....++...+++
T Consensus       397 ~~Q-TrEhL~ll~~l----gIP~IIVVINKiDLv~d~e~l----------------------------e~i~eEi~elLk  443 (1289)
T 3avx_A          397 MPQ-TREHILLGRQV----GVPYIIVFLNKCDMVDDEELL----------------------------ELVEMEVRELLS  443 (1289)
T ss_dssp             CTT-HHHHHHHHHHH----TCSCEEEEEECCTTCCCHHHH----------------------------HHHHHHHHHHHH
T ss_pred             cHH-HHHHHHHHHHc----CCCeEEEEEeecccccchhhH----------------------------HHHHHHHHHHHH
Confidence            433 33344444432    577 89999999997531100                            001233444444


Q ss_pred             hcC----CCeEEEcccCCC--------ccHHHHHHHHHHHH
Q psy1524         282 VDW----ENGFVEASAKDN--------TNITQVFKELLVQA  310 (592)
Q Consensus       282 ~~~----~~~~~EvSAktg--------~gVeeLf~~Li~~i  310 (592)
                      ...    ..+++++||++|        .||+++|+.+.+.+
T Consensus       444 ~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          444 QYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             HTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             hccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence            222    368999999999        56888888887654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.48  E-value=3.1e-13  Score=153.96  Aligned_cols=116  Identities=16%  Similarity=0.167  Sum_probs=81.0

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCce----------------e-eeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI----------------E-EMHHEDFSMNGVHLKLDILDTSGEQS  122 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt----------------~-d~~~~~v~vdg~~v~L~I~DT~G~~~  122 (592)
                      ....+|+|+|..|+|||||+++|+..........++                + .+......+....+.++||||+|+  
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~--   84 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY--   84 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS--
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc--
Confidence            345799999999999999999999433221111110                0 111122233333577888999999  


Q ss_pred             CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC
Q psy1524         123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN  202 (592)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~  202 (592)
                                                                           +.|......+++.+|++++|+|+++..
T Consensus        85 -----------------------------------------------------~~f~~~~~~~l~~ad~~ilVvD~~~g~  111 (665)
T 2dy1_A           85 -----------------------------------------------------GDFVGEIRGALEAADAALVAVSAEAGV  111 (665)
T ss_dssp             -----------------------------------------------------GGGHHHHHHHHHHCSEEEEEEETTTCS
T ss_pred             -----------------------------------------------------cchHHHHHHHHhhcCcEEEEEcCCccc
Confidence                                                                 777778888899999999999998876


Q ss_pred             CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524         203 SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLA  235 (592)
Q Consensus       203 Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~  235 (592)
                      ..... .++..+..    .++|+|+|+||+|+.
T Consensus       112 ~~qt~-~~~~~~~~----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A          112 QVGTE-RAWTVAER----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             CHHHH-HHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             chhHH-HHHHHHHH----ccCCEEEEecCCchh
Confidence            64433 44444443    378999999999987

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.48  E-value=2.3e-13  Score=146.88  Aligned_cols=167  Identities=15%  Similarity=0.150  Sum_probs=111.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      -.|+|+|++|||||||++++++... ...+..|+.......+.+++ ...+.+|||+|+.+.....              
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~--------------  222 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEG--------------  222 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGS--------------
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhh--------------
Confidence            3589999999999999999997643 24455555544445555554 2345679999982110000              


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc-C
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA-S  220 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~-~  220 (592)
                                                        ..+.......+..++.+|+|+|++ ...+.++..+..++..+.. .
T Consensus       223 ----------------------------------~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL  267 (416)
T 1udx_A          223 ----------------------------------KGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPAL  267 (416)
T ss_dssp             ----------------------------------CCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHH
T ss_pred             ----------------------------------hhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHh
Confidence                                              000000111256799999999998 6778888888887766421 1


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      ...|.|+|+||+|+... .                                ..+.....++ .....++++||+++.||+
T Consensus       268 ~~~P~ILVlNKlDl~~~-~--------------------------------~~~~l~~~l~-~~g~~vi~iSA~~g~gi~  313 (416)
T 1udx_A          268 LRRPSLVALNKVDLLEE-E--------------------------------AVKALADALA-REGLAVLPVSALTGAGLP  313 (416)
T ss_dssp             HHSCEEEEEECCTTSCH-H--------------------------------HHHHHHHHHH-TTTSCEEECCTTTCTTHH
T ss_pred             hcCCEEEEEECCChhhH-H--------------------------------HHHHHHHHHH-hcCCeEEEEECCCccCHH
Confidence            25799999999998643 0                                1122233332 335679999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy1524         301 QVFKELLVQAKVK  313 (592)
Q Consensus       301 eLf~~Li~~i~~~  313 (592)
                      ++++.|.+.+...
T Consensus       314 eL~~~i~~~l~~~  326 (416)
T 1udx_A          314 ALKEALHALVRST  326 (416)
T ss_dssp             HHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998543

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.47  E-value=6.9e-14  Score=148.38  Aligned_cols=122  Identities=16%  Similarity=0.134  Sum_probs=85.0

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCCC----------cCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCC
Q psy1524         176 NEFPAMRALSISSADAFILVYAIDD----------PNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTG  245 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvsd----------~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~  245 (592)
                      +.++.++..|+++++++|+|||+++          ..+|.++..|+..+.......++|+|||+||+||....  +  ..
T Consensus       212 ~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~k--i--~~  287 (362)
T 1zcb_A          212 RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEK--V--QV  287 (362)
T ss_dssp             ------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHH--T--TT
T ss_pred             hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhh--c--cc
Confidence            7888888999999999999999999          77899999999888765444689999999999997541  0  01


Q ss_pred             CCcccccCCCCCccccccCCCCCC-CCChHHHHHHHh-------h---cCCCeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524         246 GPFQTYLSGLPDSVCAHQISGTPD-QVPYDTTESVVQ-------V---DWENGFVEASAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       246 ~~~~~~l~~~~~~~~~~~~~~~~r-~Vs~ee~~~la~-------~---~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~  313 (592)
                      ..+..++.            +... .++.+++..++.       .   ...+.+++|||+++.||+++|..+.+.+...
T Consensus       288 ~~l~~~fp------------~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~  354 (362)
T 1zcb_A          288 VSIKDYFL------------EFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  354 (362)
T ss_dssp             CCGGGTCT------------TCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhcCc------------cccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHH
Confidence            11111111            1111 267778877651       1   2356789999999999999999999988654

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.46  E-value=2.4e-15  Score=169.19  Aligned_cols=116  Identities=24%  Similarity=0.307  Sum_probs=58.3

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC--CCCCC------------------------------ccCceeeeEEEEEeeCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSPK------------------------------YKRTIEEMHHEDFSMNG  107 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~~------------------------------~~~Tt~d~~~~~v~vdg  107 (592)
                      ...++|+|+|.+|+|||||+++|+..  .+...                              ...++.+.....+..++
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~  254 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK  254 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence            45689999999999999999999732  11100                              11122233333333343


Q ss_pred             eEEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhh
Q psy1524         108 VHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSIS  187 (592)
Q Consensus       108 ~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~  187 (592)
                        ..+.||||||+                                                       +.|......++.
T Consensus       255 --~~i~iiDTPGh-------------------------------------------------------~~f~~~~~~~~~  277 (592)
T 3mca_A          255 --KIYEIGDAPGH-------------------------------------------------------RDFISGMIAGAS  277 (592)
T ss_dssp             ------CCEEESS-------------------------------------------------------SEEEEECCC---
T ss_pred             --eEEEEEECCCh-------------------------------------------------------HHHHHHHHHHHh
Confidence              56677999999                                                       444444444578


Q ss_pred             cCCcEEEEEeCCCcC---CH---HHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCcc
Q psy1524         188 SADAFILVYAIDDPN---SF---EEIRLIRDHIFETKASTAVP-IVVVGNKSDLAD  236 (592)
Q Consensus       188 ~AD~iIlVyDvsd~~---Sf---e~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~  236 (592)
                      .+|++|+|+|+++..   .+   ......+..+..    .++| +|+|+||+|+..
T Consensus       278 ~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~  329 (592)
T 3mca_A          278 SADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMS  329 (592)
T ss_dssp             ----CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGT
T ss_pred             hCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEecccccc
Confidence            899999999998643   11   111112222222    2455 999999999975

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.46  E-value=3.9e-14  Score=152.04  Aligned_cols=58  Identities=24%  Similarity=0.307  Sum_probs=32.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEE---------------------eeCC-eEEEEEEEeCCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDF---------------------SMNG-VHLKLDILDTSG  119 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v---------------------~vdg-~~v~L~I~DT~G  119 (592)
                      +||+|+|.+|||||||+|+|++... ..++..|+.+.....+                     .+++ ..+.++||||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999998763 2455555543322221                     1233 246788999999


Q ss_pred             C
Q psy1524         120 E  120 (592)
Q Consensus       120 ~  120 (592)
                      +
T Consensus        81 ~   81 (397)
T 1wxq_A           81 L   81 (397)
T ss_dssp             -
T ss_pred             c
Confidence            8

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.46  E-value=3.2e-13  Score=136.71  Aligned_cols=126  Identities=17%  Similarity=0.222  Sum_probs=82.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ...++|+|+|.+|||||||+|+|++..+.  ..+.+++.+.....+..++  +.+.||||||+.+....           
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~-----------  103 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYI-----------  103 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEE-----------
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccc-----------
Confidence            45799999999999999999999987753  4445555555444455555  55677999999211000           


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHH--hhhcCCcEEEEEeCCCcCCHHHH-HHHHHHH
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRAL--SISSADAFILVYAIDDPNSFEEI-RLIRDHI  214 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~--~~~~AD~iIlVyDvsd~~Sfe~l-~~~l~~L  214 (592)
                                                           .+.+......  ....+|++|+|||++.. ++... ..|+..+
T Consensus       104 -------------------------------------~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l  145 (270)
T 1h65_A          104 -------------------------------------NDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAI  145 (270)
T ss_dssp             -------------------------------------CHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHH
T ss_pred             -------------------------------------hHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHH
Confidence                                                 0111111111  23479999999999764 34433 3566666


Q ss_pred             HHhhcCCC--CCEEEEEeCCCCccc
Q psy1524         215 FETKASTA--VPIVVVGNKSDLADE  237 (592)
Q Consensus       215 ~~~~~~~~--~PIILVgNK~DL~~~  237 (592)
                      .+.. ..+  .|+|+|+||+|+...
T Consensus       146 ~~~~-~~~~~~~iivV~nK~Dl~~~  169 (270)
T 1h65_A          146 TDSF-GKGIWNKAIVALTHAQFSPP  169 (270)
T ss_dssp             HHHH-CGGGGGGEEEEEECCSCCCG
T ss_pred             HHHh-CcccccCEEEEEECcccCCc
Confidence            6542 222  699999999998754

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.45  E-value=1.8e-12  Score=148.22  Aligned_cols=115  Identities=19%  Similarity=0.237  Sum_probs=82.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC--CCC------C------------CccCceeeeEEEEEeeCCeEEEEEEEeCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFS------P------------KYKRTIEEMHHEDFSMNGVHLKLDILDTSG  119 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~------~------------~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G  119 (592)
                      ....+|+|+|..|||||||+++|+..  .+.      +            ....|+. .....+..++  +.++||||||
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~-~~~~~~~~~~--~~i~liDTPG   86 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITIT-AAVTTCFWKD--HRINIIDTPG   86 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------CCEEEEEETT--EEEEEECCCS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccc-cceEEEEECC--eEEEEEECcC
Confidence            56789999999999999999999832  111      0            1112222 1112233344  6677899999


Q ss_pred             CCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCC
Q psy1524         120 EQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAID  199 (592)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvs  199 (592)
                      +                                                       ..|......+++.+|++|+|+|++
T Consensus        87 ~-------------------------------------------------------~df~~~~~~~l~~aD~~ilVvDa~  111 (691)
T 1dar_A           87 H-------------------------------------------------------VDFTIEVERSMRVLDGAIVVFDSS  111 (691)
T ss_dssp             S-------------------------------------------------------TTCHHHHHHHHHHCSEEEEEEETT
T ss_pred             c-------------------------------------------------------cchHHHHHHHHHHCCEEEEEEECC
Confidence            9                                                       667778888899999999999999


Q ss_pred             CcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         200 DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       200 d~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      +..++.....|.. +..    .++|+++|+||+|+...
T Consensus       112 ~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A          112 QGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             TCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTTC
T ss_pred             CCcchhhHHHHHH-HHH----cCCCEEEEEECCCcccC
Confidence            9988887765553 333    37899999999999864

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.43  E-value=5.7e-13  Score=147.97  Aligned_cols=116  Identities=17%  Similarity=0.282  Sum_probs=76.9

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC--CCCC--------CccCceee-------------eEEEEEeeCCeEEEEEEEe
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSP--------KYKRTIEE-------------MHHEDFSMNGVHLKLDILD  116 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~--------~~~~Tt~d-------------~~~~~v~vdg~~v~L~I~D  116 (592)
                      ....+|+|+|.+|||||||+++|+..  .+..        ....++.|             .....+..++  +.++|||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD   88 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD   88 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence            34689999999999999999999953  2210        00011111             1111222333  6677899


Q ss_pred             CCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEE
Q psy1524         117 TSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVY  196 (592)
Q Consensus       117 T~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVy  196 (592)
                      |||+                                                       +.|......++..+|++|+|+
T Consensus        89 TPG~-------------------------------------------------------~df~~~~~~~l~~aD~~IlVv  113 (529)
T 2h5e_A           89 TPGH-------------------------------------------------------EDFSEDTYRTLTAVDCCLMVI  113 (529)
T ss_dssp             CCCS-------------------------------------------------------TTCCHHHHHGGGGCSEEEEEE
T ss_pred             CCCC-------------------------------------------------------hhHHHHHHHHHHHCCEEEEEE
Confidence            9999                                                       667777777899999999999


Q ss_pred             eCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         197 AIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       197 Dvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      |+++...... ..++..+    ...++|+|+|+||+|+...
T Consensus       114 Da~~g~~~~t-~~~~~~~----~~~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A          114 DAAKGVEDRT-RKLMEVT----RLRDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             ETTTCSCHHH-HHHHHHH----TTTTCCEEEEEECTTSCCS
T ss_pred             eCCccchHHH-HHHHHHH----HHcCCCEEEEEcCcCCccc
Confidence            9998754322 2222222    3357899999999999764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.43  E-value=2.4e-15  Score=146.76  Aligned_cols=59  Identities=22%  Similarity=0.107  Sum_probs=45.4

Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc-CCCeEEEcccCCCccHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD-WENGFVEASAKDNTNIT  300 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~-~~~~~~EvSAktg~gVe  300 (592)
                      ..|+++|+||+|+...                               +.+..++...+++.. ...+++++||++|.||+
T Consensus       164 ~~~~iiv~NK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  212 (226)
T 2hf9_A          164 KTADLIVINKIDLADA-------------------------------VGADIKKMENDAKRINPDAEVVLLSLKTMEGFD  212 (226)
T ss_dssp             TTCSEEEEECGGGHHH-------------------------------HTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHH
T ss_pred             hcCCEEEEeccccCch-------------------------------hHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHH
Confidence            4688999999999754                               223455555555432 35789999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         301 QVFKELLVQAK  311 (592)
Q Consensus       301 eLf~~Li~~i~  311 (592)
                      ++|+.+.+.+.
T Consensus       213 ~l~~~l~~~~~  223 (226)
T 2hf9_A          213 KVLEFIEKSVK  223 (226)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998774

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.41  E-value=1.1e-13  Score=149.33  Aligned_cols=183  Identities=17%  Similarity=0.270  Sum_probs=83.5

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCC-CCc-------cCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCccccc
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFS-PKY-------KRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCG  129 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~-------~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~  129 (592)
                      ....++|+|+|++|||||||+|+|++..+. ..+       .+|+. +.....+..++....+++|||+|+.....    
T Consensus        28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~----  103 (418)
T 2qag_C           28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD----  103 (418)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred             cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhcc----
Confidence            456689999999999999999999987663 211       12222 12222223345556789999999832100    


Q ss_pred             ccccCCCCcCchhH--HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCc-CCHHH
Q psy1524         130 AVLWGPKKWGLDKV--CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDP-NSFEE  206 (592)
Q Consensus       130 ~~~~~~~~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~-~Sfe~  206 (592)
                          .  ......+  .+...+..                  .+   .++ ..+...++.++++.+++|++..- .+++.
T Consensus       104 ----~--~~~~~~i~~~i~~~~~~------------------~l---~qr-~~IaRal~~d~~~~vlL~ldePt~~~L~~  155 (418)
T 2qag_C          104 ----N--SNCWQPVIDYIDSKFED------------------YL---NAE-SRVNRRQMPDNRVQCCLYFIAPSGHGLKP  155 (418)
T ss_dssp             ----------CHHHHHHHHHHHHH------------------HT---TTS-CC-CCCCCCCC-CCEEEEECCC-CCSCCH
T ss_pred             ----c--hhhHHHHHHHHHHHHHH------------------HH---HHH-HHHHHHhccCCCeeEEEEEecCcccCCCH
Confidence                0  0000000  00000000                  00   000 00112235667777777776543 45655


Q ss_pred             HH-HHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCCh--HHHHHHHhhc
Q psy1524         207 IR-LIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPY--DTTESVVQVD  283 (592)
Q Consensus       207 l~-~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~--ee~~~la~~~  283 (592)
                      +. .|+..+.     .++|+|+|+||+|+...                               +.+..  +.+...+. .
T Consensus       156 ~d~~~lk~L~-----~~v~iIlVinK~Dll~~-------------------------------~ev~~~k~~i~~~~~-~  198 (418)
T 2qag_C          156 LDIEFMKRLH-----EKVNIIPLIAKADTLTP-------------------------------EECQQFKKQIMKEIQ-E  198 (418)
T ss_dssp             HHHHHHHHHT-----TTSEEEEEEESTTSSCH-------------------------------HHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHh-----ccCcEEEEEEcccCccH-------------------------------HHHHHHHHHHHHHHH-H
Confidence            54 3444442     37899999999998754                               22222  34455554 3


Q ss_pred             CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         284 WENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       284 ~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      .++.++++||+++.|++++|..+...+
T Consensus       199 ~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          199 HKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HTCCCCCCC-----------------C
T ss_pred             cCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            467899999999999999887776544

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.39  E-value=6.7e-12  Score=143.86  Aligned_cols=117  Identities=17%  Similarity=0.161  Sum_probs=82.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC--CCCC-----------C-------ccCceeeeEEEEEee-----CCeEEEEEE
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN--TFSP-----------K-------YKRTIEEMHHEDFSM-----NGVHLKLDI  114 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~--~f~~-----------~-------~~~Tt~d~~~~~v~v-----dg~~v~L~I  114 (592)
                      ....+|+|+|..|+|||||+++|+..  .+..           +       ...|+. .....+..     ++..+.++|
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~-~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITIT-SAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceee-eceEEEEECCccccCCceeEEE
Confidence            45689999999999999999999842  2211           0       011221 11112222     234578889


Q ss_pred             EeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEE
Q psy1524         115 LDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFIL  194 (592)
Q Consensus       115 ~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIl  194 (592)
                      |||||+                                                       ..|......+++.+|++|+
T Consensus        87 iDTPG~-------------------------------------------------------~df~~~~~~~l~~aD~aIl  111 (704)
T 2rdo_7           87 IDTPGH-------------------------------------------------------VDFTIEVERSMRVLDGAVM  111 (704)
T ss_pred             EeCCCc-------------------------------------------------------cchHHHHHHHHHHCCEEEE
Confidence            999999                                                       6777788888999999999


Q ss_pred             EEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         195 VYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       195 VyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      |+|+++..+......| ..+..    .++|+++|+||+|+...
T Consensus       112 VvDa~~gv~~qt~~~~-~~~~~----~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7          112 VYCAVGGVQPQSETVW-RQANK----YKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             EEeCCCCCcHHHHHHH-HHHHH----cCCCEEEEEeCCCcccc
Confidence            9999988766555444 33322    37899999999999764

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.39  E-value=6e-12  Score=144.04  Aligned_cols=115  Identities=21%  Similarity=0.269  Sum_probs=82.2

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc--CCCCC-----------C-------ccCceeeeEEEEEeeCCeEEEEEEEeCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY--NTFSP-----------K-------YKRTIEEMHHEDFSMNGVHLKLDILDTSG  119 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~--~~f~~-----------~-------~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G  119 (592)
                      ....+|+|+|.+|||||||+++|+.  +.+..           +       ...|+. .....+..++  +.++||||||
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~-~~~~~~~~~~--~~i~liDTPG   84 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITIT-SAATTAAWEG--HRVNIIDTPG   84 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------C-CSEEEEEETT--EEEEEECCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEe-eeeEEEEECC--eeEEEEECcC
Confidence            4568999999999999999999994  33210           0       011111 1122334444  5677799999


Q ss_pred             CCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCC
Q psy1524         120 EQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAID  199 (592)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvs  199 (592)
                      +                                                       ..|......+++.+|++|+|+|++
T Consensus        85 ~-------------------------------------------------------~df~~~~~~~l~~aD~~llVvDa~  109 (693)
T 2xex_A           85 H-------------------------------------------------------VDFTVEVERSLRVLDGAVTVLDAQ  109 (693)
T ss_dssp             C-------------------------------------------------------SSCCHHHHHHHHHCSEEEEEEETT
T ss_pred             C-------------------------------------------------------cchHHHHHHHHHHCCEEEEEECCC
Confidence            9                                                       556666777889999999999999


Q ss_pred             CcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         200 DPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       200 d~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      +..++.....|.. +..    .++|+|+|+||+|+...
T Consensus       110 ~g~~~~~~~~~~~-~~~----~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A          110 SGVEPQTETVWRQ-ATT----YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             TBSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTTC
T ss_pred             CCCcHHHHHHHHH-HHH----cCCCEEEEEECCCcccc
Confidence            9888877665543 433    37899999999999764

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.37  E-value=2.3e-13  Score=143.38  Aligned_cols=29  Identities=31%  Similarity=0.534  Sum_probs=25.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS   88 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~   88 (592)
                      ...++|+|+|.+|||||||+|+|++..+.
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~   57 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFL   57 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence            34579999999999999999999988774

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.36  E-value=3e-12  Score=135.63  Aligned_cols=58  Identities=21%  Similarity=0.314  Sum_probs=40.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeE---------------EEEEEEeCCCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVH---------------LKLDILDTSGE  120 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~---------------v~L~I~DT~G~  120 (592)
                      ++|+|+|.+|||||||+|+|++..+ ..++..++.+.....+.+++..               ..++||||||+
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl   76 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGL   76 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCC
Confidence            6999999999999999999998764 3455555544333345555421               46788999999

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.36  E-value=5.9e-13  Score=129.33  Aligned_cols=84  Identities=11%  Similarity=0.076  Sum_probs=57.8

Q ss_pred             cCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCC
Q psy1524         188 SADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGT  267 (592)
Q Consensus       188 ~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  267 (592)
                      .++.+++|+|+++....  ...+..   .    ...|+++|+||+|+...                              
T Consensus       129 ~~~~~i~vvd~~~~~~~--~~~~~~---~----~~~~~iiv~NK~Dl~~~------------------------------  169 (221)
T 2wsm_A          129 GENYRVVMVSVTEGDDV--VEKHPE---I----FRVADLIVINKVALAEA------------------------------  169 (221)
T ss_dssp             SCSEEEEEEEGGGCTTH--HHHCHH---H----HHTCSEEEEECGGGHHH------------------------------
T ss_pred             ccCcEEEEEeCCCcchh--hhhhhh---h----hhcCCEEEEecccCCcc------------------------------
Confidence            46889999999876431  111111   1    14689999999998754                              


Q ss_pred             CCCCChHHHHHHHhhc-CCCeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524         268 PDQVPYDTTESVVQVD-WENGFVEASAKDNTNITQVFKELLVQAK  311 (592)
Q Consensus       268 ~r~Vs~ee~~~la~~~-~~~~~~EvSAktg~gVeeLf~~Li~~i~  311 (592)
                       +....++....++.. ...+++++||++|.|++++|+.+.+.+.
T Consensus       170 -~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~  213 (221)
T 2wsm_A          170 -VGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN  213 (221)
T ss_dssp             -HTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred             -hhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence             122344444444322 3568999999999999999999998773

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.30  E-value=1.5e-12  Score=137.41  Aligned_cols=89  Identities=15%  Similarity=0.278  Sum_probs=58.1

Q ss_pred             hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524         186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS  265 (592)
Q Consensus       186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  265 (592)
                      +..+|++|+|+|.+..+.+..+..         ...+.|+++|+||+|+......                         
T Consensus       190 ~~~aD~vl~V~d~~~~~~~~~l~~---------~~~~~p~ivVlNK~Dl~~~~~~-------------------------  235 (355)
T 3p32_A          190 ANMVDTFVLLTLARTGDQLQGIKK---------GVLELADIVVVNKADGEHHKEA-------------------------  235 (355)
T ss_dssp             HTTCSEEEEEEESSTTCTTTTCCT---------TSGGGCSEEEEECCCGGGHHHH-------------------------
T ss_pred             HHhCCEEEEEECCCCCccHHHHHH---------hHhhcCCEEEEECCCCcChhHH-------------------------
Confidence            578999999999877654432221         1124599999999998754100                         


Q ss_pred             CCCCCCChHHHHHHHhh------cCCCeEEEcccCCCccHHHHHHHHHHHHHH
Q psy1524         266 GTPDQVPYDTTESVVQV------DWENGFVEASAKDNTNITQVFKELLVQAKV  312 (592)
Q Consensus       266 ~~~r~Vs~ee~~~la~~------~~~~~~~EvSAktg~gVeeLf~~Li~~i~~  312 (592)
                          .....+.......      .+..++++|||++|.||+++++.+.+.+..
T Consensus       236 ----~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          236 ----RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             ----HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence                0000111111110      235679999999999999999999988754

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.28  E-value=5.6e-11  Score=126.50  Aligned_cols=124  Identities=15%  Similarity=0.192  Sum_probs=86.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      .-..+|+|||.||||||||+|+|++... +.+|..||.+.....+.+++.++  +|+||||...+....           
T Consensus        70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i--~l~D~pGl~~~a~~~-----------  136 (376)
T 4a9a_A           70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI--QMLDLPGIIDGAKDG-----------  136 (376)
T ss_dssp             CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE--EEEECGGGCCC---------------
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE--EEEeCCCccCCchhh-----------
Confidence            3457999999999999999999997643 47888999998888899998665  559999983211000           


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                          ...... .-..++.||++++|+|++++.  .+...+..+|....
T Consensus       137 ------------------------------------~~~g~~-~l~~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~  177 (376)
T 4a9a_A          137 ------------------------------------RGRGKQ-VIAVARTCNLLFIILDVNKPL--HHKQIIEKELEGVG  177 (376)
T ss_dssp             -------------------------------------CHHHH-HHHHHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTT
T ss_pred             ------------------------------------hHHHHH-HHHHHHhcCccccccccCccH--HHHHHHHHHHHHhh
Confidence                                                011111 122478899999999999763  44444455554431


Q ss_pred             -cCCCCCEEEEEeCCCCc
Q psy1524         219 -ASTAVPIVVVGNKSDLA  235 (592)
Q Consensus       219 -~~~~~PIILVgNK~DL~  235 (592)
                       .-.+.|.+++.||+|..
T Consensus       178 ~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          178 IRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             EEETCCCCCEEEEECSSS
T ss_pred             HhhccCChhhhhhHhhhh
Confidence             12357888999999974

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.27  E-value=5.9e-12  Score=140.45  Aligned_cols=56  Identities=23%  Similarity=0.257  Sum_probs=44.0

Q ss_pred             hhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         178 FPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       178 ~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      |..+...++..+|++|+|+|+++....+....++..+..    .+.|+++|+||+|+...
T Consensus       178 f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          178 FPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADMVET  233 (550)
T ss_dssp             HHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGGSCH
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCccCH
Confidence            556777788999999999999987666666666665533    35799999999999854

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.27  E-value=1.2e-11  Score=131.52  Aligned_cols=58  Identities=19%  Similarity=0.310  Sum_probs=38.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCC-------------------eEEEEEEEeCCCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNG-------------------VHLKLDILDTSGE  120 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg-------------------~~v~L~I~DT~G~  120 (592)
                      ++|+|+|.+|||||||+|+|++... ..++..++.+.....+.+.+                   ....++||||||+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            5899999999999999999997642 34444443322222223321                   2356788999999

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.24  E-value=2e-11  Score=142.52  Aligned_cols=117  Identities=18%  Similarity=0.238  Sum_probs=85.7

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC------------CCCCC----c--cCcee-eeEEEEEe------------eCCe
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN------------TFSPK----Y--KRTIE-EMHHEDFS------------MNGV  108 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~------------~f~~~----~--~~Tt~-d~~~~~v~------------vdg~  108 (592)
                      ....||+|+|..|||||||+++|+..            .+.+.    +  ..|+. ......+.            +++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            45689999999999999999999953            11110    0  11222 11222222            2455


Q ss_pred             EEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhc
Q psy1524         109 HLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISS  188 (592)
Q Consensus       109 ~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~  188 (592)
                      .+.++||||||+                                                       .+|......+++.
T Consensus        97 ~~~i~liDTPG~-------------------------------------------------------~df~~~~~~~l~~  121 (842)
T 1n0u_A           97 SFLINLIDSPGH-------------------------------------------------------VDFSSEVTAALRV  121 (842)
T ss_dssp             EEEEEEECCCCC-------------------------------------------------------CSSCHHHHHHHHT
T ss_pred             CceEEEEECcCc-------------------------------------------------------hhhHHHHHHHHHh
Confidence            788999999999                                                       6777888889999


Q ss_pred             CCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524         189 ADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD  236 (592)
Q Consensus       189 AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~  236 (592)
                      +|++|+|||+++..++.....|.... .    .++|+|+|+||+|+..
T Consensus       122 aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A          122 TDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRAL  164 (842)
T ss_dssp             CSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHHH
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEECCCcch
Confidence            99999999999999988876555432 2    3689999999999874

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.23  E-value=9.4e-12  Score=124.11  Aligned_cols=26  Identities=12%  Similarity=-0.083  Sum_probs=23.6

Q ss_pred             CeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524         286 NGFVEASAKDNTNITQVFKELLVQAK  311 (592)
Q Consensus       286 ~~~~EvSAktg~gVeeLf~~Li~~i~  311 (592)
                      .+++++||++|.|++++++.+.+.+.
T Consensus       231 ~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          231 VRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             CCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccceEEEecCcccHHHHHHHHHHHhc
Confidence            47899999999999999999988774

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.23  E-value=4.5e-12  Score=133.63  Aligned_cols=88  Identities=16%  Similarity=0.186  Sum_probs=50.9

Q ss_pred             hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524         186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS  265 (592)
Q Consensus       186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  265 (592)
                      ...+|++++|+|+++......+..   .+      -..|.++|+||+|+......                         
T Consensus       185 ~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~-------------------------  230 (349)
T 2www_A          185 ADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPA-------------------------  230 (349)
T ss_dssp             HTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHH-------------------------
T ss_pred             HhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhH-------------------------
Confidence            567999999999987643222211   11      24588999999998743100                         


Q ss_pred             CCCCCCChHHHHHHHh------hcCCCeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524         266 GTPDQVPYDTTESVVQ------VDWENGFVEASAKDNTNITQVFKELLVQAK  311 (592)
Q Consensus       266 ~~~r~Vs~ee~~~la~------~~~~~~~~EvSAktg~gVeeLf~~Li~~i~  311 (592)
                          ...........+      ..+..+++.+||++|.|++++++.|.+.+.
T Consensus       231 ----~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          231 ----RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             ----HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence                000001111001      022457899999999999999999988763

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.17  E-value=6.6e-11  Score=135.78  Aligned_cols=96  Identities=16%  Similarity=0.093  Sum_probs=59.8

Q ss_pred             hhHHHHHhh-hcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCC
Q psy1524         178 FPAMRALSI-SSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLP  256 (592)
Q Consensus       178 ~~~l~~~~~-~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~  256 (592)
                      +..+...|+ ..+|++|+|+|+++...-.+...++..+    ...+.|+|+|+||+|+.+...                 
T Consensus       176 i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L----~~~g~pvIlVlNKiDlv~~~~-----------------  234 (772)
T 3zvr_A          176 IRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV----DPQGQRTIGVITKLDLMDEGT-----------------  234 (772)
T ss_dssp             HHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHH----CTTCSSEEEEEECTTSSCTTC-----------------
T ss_pred             HHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHH----HhcCCCEEEEEeCcccCCcch-----------------
Confidence            344444455 5789999999998764433332333333    334789999999999986511                 


Q ss_pred             CccccccCCCCCCCCChHHHHH--HHhh-cCCCeEEEcccCCCccHHHHHHHHHHH
Q psy1524         257 DSVCAHQISGTPDQVPYDTTES--VVQV-DWENGFVEASAKDNTNITQVFKELLVQ  309 (592)
Q Consensus       257 ~~~~~~~~~~~~r~Vs~ee~~~--la~~-~~~~~~~EvSAktg~gVeeLf~~Li~~  309 (592)
                                    ... ....  +... ....+++.+||++|.|+++|++.+.+.
T Consensus       235 --------------~~~-~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          235 --------------DAR-DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             --------------CSH-HHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             --------------hhH-HHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence                          111 1110  0000 112357789999999999999888764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.12  E-value=3.8e-11  Score=126.05  Aligned_cols=88  Identities=18%  Similarity=0.332  Sum_probs=52.0

Q ss_pred             hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524         186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS  265 (592)
Q Consensus       186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  265 (592)
                      ...+|++|+|+|+++...+..+..   ..      .+.|+++|+||+|+..... .                        
T Consensus       167 ~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~-~------------------------  212 (341)
T 2p67_A          167 ARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTN-V------------------------  212 (341)
T ss_dssp             HTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHH-H------------------------
T ss_pred             HHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHH-H------------------------
Confidence            578999999999976543211111   11      1358899999999875310 0                        


Q ss_pred             CCCCCCChHHHHHHHhh------cCCCeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524         266 GTPDQVPYDTTESVVQV------DWENGFVEASAKDNTNITQVFKELLVQAK  311 (592)
Q Consensus       266 ~~~r~Vs~ee~~~la~~------~~~~~~~EvSAktg~gVeeLf~~Li~~i~  311 (592)
                          ....++.......      .+..+++++||++|.|++++++.+.+.+.
T Consensus       213 ----~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          213 ----AIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             ----HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                0000111111111      12457899999999999999999998764

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.01  E-value=4.5e-09  Score=117.15  Aligned_cols=114  Identities=18%  Similarity=0.280  Sum_probs=77.7

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcC--C----------------CCCC----cc--CceeeeEEEEEeeCCeEEEEEEEe
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYN--T----------------FSPK----YK--RTIEEMHHEDFSMNGVHLKLDILD  116 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~--~----------------f~~~----~~--~Tt~d~~~~~v~vdg~~v~L~I~D  116 (592)
                      +.-+|+|+|..++|||||..+|+..  .                +.+.    ..  -|+. .....+..++  +.++|+|
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~-s~~~~~~~~~--~~iNlID  106 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVT-TSVMQFPYRD--RVVNLLD  106 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CT-TTEEEEEETT--EEEEEEC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEe-eceEEEEECC--EEEEEEe
Confidence            4569999999999999999999721  1                1100    00  0111 1112233344  6778899


Q ss_pred             CCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEE
Q psy1524         117 TSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVY  196 (592)
Q Consensus       117 T~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVy  196 (592)
                      |||+                                                       ..|..-....++-+|++|+|+
T Consensus       107 TPGH-------------------------------------------------------vDF~~Ev~raL~~~DgAvlVv  131 (548)
T 3vqt_A          107 TPGH-------------------------------------------------------QDFSEDTYRVLTAVDSALVVI  131 (548)
T ss_dssp             CCCG-------------------------------------------------------GGCSHHHHHHHHSCSEEEEEE
T ss_pred             CCCc-------------------------------------------------------HHHHHHHHHHHHhcCceEEEe
Confidence            9999                                                       566666677788999999999


Q ss_pred             eCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         197 AIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       197 Dvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      |+...-.-.....| ..+.+    .++|+|++.||+|....
T Consensus       132 da~~GV~~qT~~v~-~~a~~----~~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          132 DAAKGVEAQTRKLM-DVCRM----RATPVMTFVNKMDREAL  167 (548)
T ss_dssp             ETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSCCC
T ss_pred             ecCCCcccccHHHH-HHHHH----hCCceEEEEecccchhc
Confidence            99987665544444 44444    37999999999998754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.00  E-value=6.1e-10  Score=115.00  Aligned_cols=96  Identities=20%  Similarity=0.148  Sum_probs=73.4

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCCCcC-CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCC
Q psy1524         176 NEFPAMRALSISSADAFILVYAIDDPN-SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSG  254 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~  254 (592)
                      +++..+.+.+++++|++|+|||++++. ++..+..|+..+..    .++|+|+|+||+||.++                 
T Consensus        67 er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~-----------------  125 (302)
T 2yv5_A           67 ERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNE-----------------  125 (302)
T ss_dssp             CCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCH-----------------
T ss_pred             ChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCc-----------------
Confidence            555566666899999999999999986 99999999886654    47899999999999754                 


Q ss_pred             CCCccccccCCCCCCCCC-hHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHH
Q psy1524         255 LPDSVCAHQISGTPDQVP-YDTTESVVQVDWENGFVEASAKDNTNITQVFKELL  307 (592)
Q Consensus       255 ~~~~~~~~~~~~~~r~Vs-~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li  307 (592)
                                    +.+. .++...+++ ..+.+++++||++|.||+++|+.+.
T Consensus       126 --------------~~v~~~~~~~~~~~-~~g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          126 --------------EEKKELERWISIYR-DAGYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             --------------HHHHHHHHHHHHHH-HTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred             --------------cccHHHHHHHHHHH-HCCCeEEEEECCCCCCHHHHHhhcc
Confidence                          1111 233344443 3356899999999999999987653

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.89  E-value=2.4e-09  Score=112.30  Aligned_cols=27  Identities=7%  Similarity=0.108  Sum_probs=23.3

Q ss_pred             CCeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524         285 ENGFVEASAKDNTNITQVFKELLVQAK  311 (592)
Q Consensus       285 ~~~~~EvSAktg~gVeeLf~~Li~~i~  311 (592)
                      ..+++.+||+++.|++++++.|.+.+.
T Consensus       234 ~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          234 TPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             CCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            456889999999999999999988663

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.83  E-value=3.7e-09  Score=113.13  Aligned_cols=98  Identities=16%  Similarity=0.190  Sum_probs=52.5

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCe---------------EEEEEEEeCCCCCCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGV---------------HLKLDILDTSGEQSGK  124 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~---------------~v~L~I~DT~G~~~~~  124 (592)
                      ..++|+|+|.+|||||||+|+|++..+. .++..+|.+.....+.+.+.               ...++||||+|+....
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            4579999999999999999999987653 34455555554555555542               2347889999982110


Q ss_pred             cccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCH
Q psy1524         125 GLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSF  204 (592)
Q Consensus       125 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sf  204 (592)
                      ..                                                .+........+++.+|++++|+|+++..++
T Consensus       101 s~------------------------------------------------~~glg~~~l~~ir~aD~Il~VvD~~~~~~i  132 (396)
T 2ohf_A          101 HN------------------------------------------------GQGLGNAFLSHISACDGIFHLTRAFEDDDI  132 (396)
T ss_dssp             ------------------------------------------------------CCHHHHHHHTSSSEEEEEEC------
T ss_pred             ch------------------------------------------------hhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence            00                                                011112334568999999999999876665


Q ss_pred             HH
Q psy1524         205 EE  206 (592)
Q Consensus       205 e~  206 (592)
                      .+
T Consensus       133 ~~  134 (396)
T 2ohf_A          133 TH  134 (396)
T ss_dssp             --
T ss_pred             hh
Confidence            44

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.78  E-value=6.3e-08  Score=103.57  Aligned_cols=60  Identities=18%  Similarity=0.304  Sum_probs=45.7

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeE---------------EEEEEEeCCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVH---------------LKLDILDTSGE  120 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~---------------v~L~I~DT~G~  120 (592)
                      ...+|+|+|.+|||||||+|+|++..+  ..++..|+.+.....+.+++..               ..+.+||++|.
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            357999999999999999999998764  3556666666666666666521               35678999998

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.77  E-value=5.5e-09  Score=118.47  Aligned_cols=115  Identities=21%  Similarity=0.263  Sum_probs=76.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc--CCCCC----CccCceee-----------eEEEEEeeCCeEEEEEEEeCCCCCCCCc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY--NTFSP----KYKRTIEE-----------MHHEDFSMNGVHLKLDILDTSGEQSGKG  125 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~--~~f~~----~~~~Tt~d-----------~~~~~v~vdg~~v~L~I~DT~G~~~~~~  125 (592)
                      -+|+|+|..++|||||+.+|+.  +.+..    ....++.|           .....+.+....+.++|+||||+     
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH-----   77 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGH-----   77 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCS-----
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCc-----
Confidence            4799999999999999999972  22211    00001101           11111222333356778999999     


Q ss_pred             ccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHH
Q psy1524         126 LKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFE  205 (592)
Q Consensus       126 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe  205 (592)
                                                                        ..|..-....++-+|++|+|+|+...-.-.
T Consensus        78 --------------------------------------------------~DF~~Ev~raL~~~DgavlVVDa~~GV~~q  107 (638)
T 3j25_A           78 --------------------------------------------------MDFLAEVYRSLSVLDGAILLISAKDGVQAQ  107 (638)
T ss_dssp             --------------------------------------------------SSTHHHHHHHHTTCSEEECCEESSCTTCSH
T ss_pred             --------------------------------------------------HHHHHHHHHHHHHhCEEEEEEeCCCCCcHH
Confidence                                                              667777777889999999999998765433


Q ss_pred             HHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         206 EIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       206 ~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      .. ..+..+.+.    ++|+|++.||+|....
T Consensus       108 T~-~v~~~a~~~----~lp~i~~INKmDr~~a  134 (638)
T 3j25_A          108 TR-ILFHALRKM----GIPTIFFINKIDQNGI  134 (638)
T ss_dssp             HH-HHHHHHHHH----TCSCEECCEECCSSSC
T ss_pred             HH-HHHHHHHHc----CCCeEEEEeccccccC
Confidence            33 334444443    6899999999998754

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.71  E-value=2.5e-07  Score=106.09  Aligned_cols=118  Identities=15%  Similarity=0.173  Sum_probs=77.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC--------CCCC--CccCceee---------eEEEEEeeC-----CeEEEEEEE
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN--------TFSP--KYKRTIEE---------MHHEDFSMN-----GVHLKLDIL  115 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~--------~f~~--~~~~Tt~d---------~~~~~v~vd-----g~~v~L~I~  115 (592)
                      ++.-+|+|+|..++|||||..+|+..        ....  .+..+..+         .....+...     ...+.++|+
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            34568999999999999999999721        1110  00000000         001111221     235889999


Q ss_pred             eCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEE
Q psy1524         116 DTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILV  195 (592)
Q Consensus       116 DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlV  195 (592)
                      ||||+                                                       -.|..-....++-+|++|+|
T Consensus        91 DTPGH-------------------------------------------------------vDF~~Ev~~aLr~~Dgavlv  115 (709)
T 4fn5_A           91 DTPGH-------------------------------------------------------VDFTIEVERSLRVLDGAVVV  115 (709)
T ss_dssp             CCCSC-------------------------------------------------------TTCHHHHHHHHHHCSEEEEE
T ss_pred             eCCCC-------------------------------------------------------cccHHHHHHHHHHhCeEEEE
Confidence            99999                                                       56666667778899999999


Q ss_pred             EeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         196 YAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       196 yDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      +|+...-.-.....|.. +.+.    ++|+|++.||+|....
T Consensus       116 VDaveGV~~qT~~v~~~-a~~~----~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A          116 FCGTSGVEPQSETVWRQ-ANKY----GVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             EETTTCSCHHHHHHHHH-HHHH----TCCEEEEEECSSSTTC
T ss_pred             EECCCCCchhHHHHHHH-HHHc----CCCeEEEEccccccCc
Confidence            99998766544443433 3332    7899999999998654

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.64  E-value=2.2e-08  Score=98.05  Aligned_cols=106  Identities=16%  Similarity=0.101  Sum_probs=68.2

Q ss_pred             cccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh--c--CCCCCEEEEEeCC-CCcccccccccCCC
Q psy1524         172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK--A--STAVPIVVVGNKS-DLADENRQVDLTGG  246 (592)
Q Consensus       172 ~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~--~--~~~~PIILVgNK~-DL~~~~~~~~~~~~  246 (592)
                      --++++++.+|..||.++|++|+|+|++|++.++ ....+.+|....  .  ..+.|++|.+||. |+...         
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A---------  178 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---------  178 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB---------
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC---------
Confidence            3478899999999999999999999999987654 333332332221  1  2578999999995 67533         


Q ss_pred             CcccccCCCCCccccccCCCCCCCCChHHHHHHH---hhcCCCeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524         247 PFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVV---QVDWENGFVEASAKDNTNITQVFKELLVQAK  311 (592)
Q Consensus       247 ~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la---~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~  311 (592)
                                              .+..+.....   .......+..|||++|+|+.|.++||++.+.
T Consensus       179 ------------------------ms~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          179 ------------------------MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             ------------------------CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             ------------------------CCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence                                    2333332221   1123345789999999999999999998773

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.50  E-value=1.8e-07  Score=99.09  Aligned_cols=97  Identities=16%  Similarity=0.117  Sum_probs=72.0

Q ss_pred             cCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccC
Q psy1524         174 STNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLS  253 (592)
Q Consensus       174 ~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~  253 (592)
                      ..++|..+...+++.+|++|+|+|++|+.     ..|...+.+..  .+.|+|+|+||+||.+.                
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~----------------  111 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPK----------------  111 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCT----------------
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCc----------------
Confidence            45889999999999999999999998752     45666666652  47899999999999754                


Q ss_pred             CCCCccccccCCCCCCCCChHHHHHH----HhhcCCC---eEEEcccCCCccHHHHHHHHHHHH
Q psy1524         254 GLPDSVCAHQISGTPDQVPYDTTESV----VQVDWEN---GFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       254 ~~~~~~~~~~~~~~~r~Vs~ee~~~l----a~~~~~~---~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                                      .+..+....+    ++ ..+.   .++++||++|.||+++++.+.+..
T Consensus       112 ----------------~~~~~~~~~~l~~~~~-~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          112 ----------------SVKHDKVKHWMRYSAK-QLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             ----------------TSCHHHHHHHHHHHHH-HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ----------------ccCHHHHHHHHHHHHH-HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence                            1222333332    22 2233   689999999999999999987654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.50  E-value=1.7e-07  Score=95.87  Aligned_cols=105  Identities=13%  Similarity=0.047  Sum_probs=72.5

Q ss_pred             ccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHH----HHHhhcCCCCCEEEEEeC-CCCcccccccccCCCC
Q psy1524         173 CSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDH----IFETKASTAVPIVVVGNK-SDLADENRQVDLTGGP  247 (592)
Q Consensus       173 ~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~----L~~~~~~~~~PIILVgNK-~DL~~~~~~~~~~~~~  247 (592)
                      -+|++++.++..|+.++|++|+|+|++|++.++ ....+.+    +.+.....+.|++|.+|| .|+...          
T Consensus       195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A----------  263 (312)
T 3l2o_B          195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR----------  263 (312)
T ss_dssp             --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB----------
T ss_pred             CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC----------
Confidence            577899999999999999999999999988654 3322222    212111357899999997 587543          


Q ss_pred             cccccCCCCCccccccCCCCCCCCChHHHHHHH---hhcCCCeEEEcccCCCccHHHHHHHHHHHHH
Q psy1524         248 FQTYLSGLPDSVCAHQISGTPDQVPYDTTESVV---QVDWENGFVEASAKDNTNITQVFKELLVQAK  311 (592)
Q Consensus       248 ~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la---~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~  311 (592)
                                             .+..+.....   .......+..|||++|+|+.|.++++++.+.
T Consensus       264 -----------------------ms~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          264 -----------------------MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             -----------------------CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             -----------------------CCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence                                   2323322221   1122344789999999999999999998873

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.36  E-value=6.6e-07  Score=94.83  Aligned_cols=97  Identities=20%  Similarity=0.186  Sum_probs=70.6

Q ss_pred             cCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccC
Q psy1524         174 STNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLS  253 (592)
Q Consensus       174 ~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~  253 (592)
                      .++.|.++...++.+++++|+|+|++|+.+     .|...+.+..  .+.|+|+|+||+||.+.                
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~----------------  113 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPR----------------  113 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCT----------------
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCC----------------
Confidence            468999999999999999999999999763     3444454442  37899999999999754                


Q ss_pred             CCCCccccccCCCCCCCCChHHHHHH----HhhcCC---CeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         254 GLPDSVCAHQISGTPDQVPYDTTESV----VQVDWE---NGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       254 ~~~~~~~~~~~~~~~r~Vs~ee~~~l----a~~~~~---~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                                      .+..+....+    ++ ..+   ..++.+||++|.|++++++.+.+.+
T Consensus       114 ----------------~~~~~~~~~~l~~~~~-~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          114 ----------------SVKYPKLLRWMRRMAE-ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             ----------------TCCHHHHHHHHHHHHH-TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             ----------------ccCHHHHHHHHHHHHH-HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence                            1222333322    22 223   3689999999999999999887654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.25  E-value=1.3e-07  Score=100.34  Aligned_cols=53  Identities=26%  Similarity=0.428  Sum_probs=36.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC------CC-CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN------TF-SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~------~f-~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      .+|+++|.+|||||||+|+|++.      .. ...+..||.+..  .+.++..   +.++||||.
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~~~---~~liDtPG~  222 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMI--EIPLESG---ATLYDTPGI  222 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEE--EEECSTT---CEEEECCSC
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeE--EEEeCCC---eEEEeCCCc
Confidence            47999999999999999999965      22 233444554332  2334332   566999998

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.14  E-value=1.4e-07  Score=100.02  Aligned_cols=53  Identities=26%  Similarity=0.456  Sum_probs=34.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC------C--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNT------F--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~------f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      .+|+++|.+|||||||+|+|++..      .  ...+..||.+..  .+.++..   +.++||||.
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~~~---~~liDtPG~  221 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLI--DIPLDEE---SSLYDTPGI  221 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEE--EEESSSS---CEEEECCCB
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceE--EEEecCC---eEEEeCCCc
Confidence            589999999999999999999652      1  123333443322  2333332   567999998

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.12  E-value=2.9e-06  Score=93.54  Aligned_cols=23  Identities=13%  Similarity=0.317  Sum_probs=20.2

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHH
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~   83 (592)
                      ....|+|+|.+|||||||+++|+
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA  122 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLA  122 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45689999999999999999999

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.00  E-value=1.2e-05  Score=81.98  Aligned_cols=93  Identities=13%  Similarity=0.034  Sum_probs=65.1

Q ss_pred             chhHHHHHhhhcCCcEEEEEeCCCcCCHHH--HHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCC
Q psy1524         177 EFPAMRALSISSADAFILVYAIDDPNSFEE--IRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSG  254 (592)
Q Consensus       177 ~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~--l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~  254 (592)
                      +........+..+|++++|+|+.++.+..+  +..++         .++|+++|+||+||.+...               
T Consensus        12 ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l---------~~kp~ilVlNK~DL~~~~~---------------   67 (282)
T 1puj_A           12 KARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL---------KNKPRIMLLNKADKADAAV---------------   67 (282)
T ss_dssp             HHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC---------SSSCEEEEEECGGGSCHHH---------------
T ss_pred             HHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH---------CCCCEEEEEECcccCCHHH---------------
Confidence            333444556889999999999999877642  33221         4789999999999975410               


Q ss_pred             CCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHHHH
Q psy1524         255 LPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKV  312 (592)
Q Consensus       255 ~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~  312 (592)
                                        .+....+.+ ..+.+++.+||+++.|++++++.+.+.+..
T Consensus        68 ------------------~~~~~~~~~-~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           68 ------------------TQQWKEHFE-NQGIRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             ------------------HHHHHHHHH-TTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             ------------------HHHHHHHHH-hcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence                              011122222 234578999999999999999988777643

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.96  E-value=3.2e-05  Score=83.42  Aligned_cols=60  Identities=22%  Similarity=0.337  Sum_probs=36.0

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCc----cCc-eeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKY----KRT-IEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~----~~T-t~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      ..++|+|+|++|||||||+|.+++..+....    .+. +.......+.-.+....+.++|++|.
T Consensus        41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~  105 (427)
T 2qag_B           41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF  105 (427)
T ss_dssp             CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhh
Confidence            3467999999999999999999976543211    111 11111112222333346788999998

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.95  E-value=2.2e-05  Score=79.57  Aligned_cols=24  Identities=21%  Similarity=0.556  Sum_probs=22.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|+|++|+|||||+|.+++-
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~   25 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKS   25 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            479999999999999999999964

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.91  E-value=0.00012  Score=78.63  Aligned_cols=24  Identities=33%  Similarity=0.282  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      ...|+|+|++|||||||+|.+++-
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCC
Confidence            348999999999999999999974

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.68  E-value=3.2e-05  Score=78.91  Aligned_cols=56  Identities=23%  Similarity=0.391  Sum_probs=34.9

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      ...++|+|+|.+|||||||+|+|++....  .....+|.+..  .+.++.   .+.++||||.
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~  175 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGI  175 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCc
Confidence            45689999999999999999999976532  33333443221  223332   3556999999

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=97.61  E-value=0.00013  Score=81.84  Aligned_cols=59  Identities=20%  Similarity=0.227  Sum_probs=37.9

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEE----e---eCCeEEEEEEEeCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDF----S---MNGVHLKLDILDTSGE  120 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v----~---vdg~~v~L~I~DT~G~  120 (592)
                      ...++|+|+|.+|||||||+|+|++....-....|+.+......    .   .++.  .+.|+||||.
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~--~i~LiDTpGi  101 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGH--ILVLLDTEGL  101 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTC--EEEEEEECCB
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCc--eEEEecCCCc
Confidence            45689999999999999999999977532123333322111111    1   1333  4556999998

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.61  E-value=2e-05  Score=79.62  Aligned_cols=53  Identities=30%  Similarity=0.455  Sum_probs=33.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      ++|+++|.+|||||||+|+|++....  .....++...  ..+.++.   .+.+|||||+
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~  154 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGI--QWFSLEN---GVKILDTPGI  154 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCS--CEEECTT---SCEEESSCEE
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccce--EEEEeCC---CEEEEECCCc
Confidence            79999999999999999999977653  2222222221  1222332   3567999998

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.32  E-value=0.00069  Score=73.35  Aligned_cols=23  Identities=13%  Similarity=0.312  Sum_probs=20.9

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHH
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~   83 (592)
                      ....|+|+|.+||||||++..|.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA  121 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLA  121 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHH
Confidence            45789999999999999999988

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.28  E-value=0.00012  Score=73.78  Aligned_cols=84  Identities=12%  Similarity=0.025  Sum_probs=56.7

Q ss_pred             HHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccc
Q psy1524         181 MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVC  260 (592)
Q Consensus       181 l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~  260 (592)
                      .....+.++|++|+|+|+.++.+.....     +. . .  ++|+|+|+||+||.+...                     
T Consensus        14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l~-l-l--~k~~iivlNK~DL~~~~~---------------------   63 (262)
T 3cnl_A           14 QIKDLLRLVNTVVEVRDARAPFATSAYG-----VD-F-S--RKETIILLNKVDIADEKT---------------------   63 (262)
T ss_dssp             HHHHHHTTCSEEEEEEETTSTTTTSCTT-----SC-C-T--TSEEEEEEECGGGSCHHH---------------------
T ss_pred             HHHHHHhhCCEEEEEeeCCCCCcCcChH-----HH-h-c--CCCcEEEEECccCCCHHH---------------------
Confidence            3344588999999999999887654311     11 1 1  689999999999986410                     


Q ss_pred             cccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHH
Q psy1524         261 AHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLV  308 (592)
Q Consensus       261 ~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~  308 (592)
                                  .+....+.+ ..+.++ .+||+++.|++++++.+..
T Consensus        64 ------------~~~~~~~~~-~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           64 ------------TKKWVEFFK-KQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             ------------HHHHHHHHH-HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             ------------HHHHHHHHH-HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence                        011122222 234567 8999999999999877644

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.17  E-value=0.00042  Score=74.85  Aligned_cols=23  Identities=13%  Similarity=0.312  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...|+|+|.+||||||+++.|..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~  121 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLAR  121 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999985

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.07  E-value=0.0015  Score=73.40  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNT   86 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~   86 (592)
                      .|+|+|++|||||||++.+++-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            49999999999999999999753

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.88  E-value=0.00023  Score=73.55  Aligned_cols=85  Identities=15%  Similarity=0.225  Sum_probs=55.7

Q ss_pred             HhhhcCCcEEEEEeCCCcCC-HHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccc
Q psy1524         184 LSISSADAFILVYAIDDPNS-FEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAH  262 (592)
Q Consensus       184 ~~~~~AD~iIlVyDvsd~~S-fe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~  262 (592)
                      ..+.++|.+++|+|+.++.. ...+..++-..    ...++|.|||+||+||.++..                       
T Consensus        82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~----~~~~~~~vivlnK~DL~~~~~-----------------------  134 (307)
T 1t9h_A           82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLV----EANDIQPIICITKMDLIEDQD-----------------------  134 (307)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHHHHHHHHHHH----HTTTCEEEEEEECGGGCCCHH-----------------------
T ss_pred             HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH----HHCCCCEEEEEECCccCchhh-----------------------
Confidence            35889999999999997754 44333333222    235789999999999986510                       


Q ss_pred             cCCCCCCCCChHHHHHHHhh--cCCCeEEEcccCCCccHHHHHH
Q psy1524         263 QISGTPDQVPYDTTESVVQV--DWENGFVEASAKDNTNITQVFK  304 (592)
Q Consensus       263 ~~~~~~r~Vs~ee~~~la~~--~~~~~~~EvSAktg~gVeeLf~  304 (592)
                               ..+....+.+.  ..+.+++.+||+++.|+++|+.
T Consensus       135 ---------~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          135 ---------TEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIP  169 (307)
T ss_dssp             ---------HHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGG
T ss_pred             ---------hHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHh
Confidence                     00012222221  2346789999999999888764

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.71  E-value=0.00029  Score=76.60  Aligned_cols=46  Identities=11%  Similarity=0.057  Sum_probs=32.3

Q ss_pred             HHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCC
Q psy1524         183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSD  233 (592)
Q Consensus       183 ~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~D  233 (592)
                      ..++..+++.++|+|.++. +++....|+..+.+.    ..+++.+-..++
T Consensus       115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~----~~~vv~l~~~~~  160 (469)
T 1bif_A          115 RKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN----GYKTFFVESICV  160 (469)
T ss_dssp             HHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH----TCEEEEEEECCC
T ss_pred             HHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc----CCcEEEEEEECC
Confidence            4466678899999999988 677777777766654    345666555554

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.62  E-value=0.0062  Score=64.11  Aligned_cols=82  Identities=20%  Similarity=0.205  Sum_probs=52.7

Q ss_pred             hhcCCcEEEEEeCCCcC-CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccC
Q psy1524         186 ISSADAFILVYAIDDPN-SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQI  264 (592)
Q Consensus       186 ~~~AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  264 (592)
                      ..++|.+++|... ++. +...+..++-....    .++|.|||+||+||.++..                         
T Consensus       128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~-------------------------  177 (358)
T 2rcn_A          128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEG-------------------------  177 (358)
T ss_dssp             EECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHH-------------------------
T ss_pred             HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchh-------------------------
Confidence            6789999988665 454 34444444333222    3678899999999986510                         


Q ss_pred             CCCCCCCChHHHHHHHhh--cCCCeEEEcccCCCccHHHHHHH
Q psy1524         265 SGTPDQVPYDTTESVVQV--DWENGFVEASAKDNTNITQVFKE  305 (592)
Q Consensus       265 ~~~~r~Vs~ee~~~la~~--~~~~~~~EvSAktg~gVeeLf~~  305 (592)
                              .+....+...  ..+.+++.+||+++.|++++...
T Consensus       178 --------~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~  212 (358)
T 2rcn_A          178 --------MDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEA  212 (358)
T ss_dssp             --------HHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHH
T ss_pred             --------HHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHh
Confidence                    0112222221  34567899999999999988753

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.47  E-value=0.0017  Score=70.10  Aligned_cols=23  Identities=13%  Similarity=0.265  Sum_probs=20.5

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHH
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~   83 (592)
                      ....|+++|.+||||||++..|.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA  118 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLA  118 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            35678999999999999999987

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.41  E-value=0.005  Score=63.09  Aligned_cols=22  Identities=14%  Similarity=0.286  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHH
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~   83 (592)
                      .-.|+++|.+||||||++..|.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la  119 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLA  119 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4578889999999999999888

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=95.93  E-value=0.0071  Score=65.53  Aligned_cols=25  Identities=28%  Similarity=0.280  Sum_probs=22.3

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .+..-|+|+|.+++|||+|+|+|++
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhh
Confidence            4567889999999999999999985

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=94.97  E-value=0.012  Score=55.11  Aligned_cols=22  Identities=23%  Similarity=0.511  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .|+|+|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999999853

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=94.72  E-value=0.012  Score=60.56  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -.++|+|++|||||||+|.+.+.
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             CEEEEECCCCCCHHHHHHHhccc
Confidence            38999999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=94.64  E-value=0.016  Score=55.28  Aligned_cols=21  Identities=29%  Similarity=0.567  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+|+|++|||||||++.+.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999999985

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=94.62  E-value=0.017  Score=54.37  Aligned_cols=22  Identities=27%  Similarity=0.758  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      +++|+|++|||||||++.+++.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999998854

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=94.23  E-value=0.022  Score=54.93  Aligned_cols=24  Identities=33%  Similarity=0.602  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .--|+|+|++|||||||+++|...
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhh
Confidence            346899999999999999999853

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=94.20  E-value=0.022  Score=53.50  Aligned_cols=22  Identities=14%  Similarity=0.333  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -|+|+|++|||||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            6899999999999999999854

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=94.01  E-value=0.027  Score=52.45  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -.|+|+|++|||||||++.+.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            46999999999999999999864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=93.95  E-value=0.026  Score=53.83  Aligned_cols=22  Identities=32%  Similarity=0.446  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -++|+|++|||||||++.+.+-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999999854

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=93.95  E-value=0.028  Score=53.60  Aligned_cols=21  Identities=24%  Similarity=0.597  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~   85 (592)
                      |+|+|++|||||||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999843

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=93.90  E-value=0.027  Score=54.88  Aligned_cols=23  Identities=30%  Similarity=0.377  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      --++|+|++|||||||++.+.+.
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhcc
Confidence            37899999999999999999864

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=93.90  E-value=0.2  Score=46.50  Aligned_cols=20  Identities=20%  Similarity=0.351  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q psy1524          65 VVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~   84 (592)
                      ++|.|++|+|||+|+..+..
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999874

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=93.87  E-value=0.027  Score=54.45  Aligned_cols=22  Identities=32%  Similarity=0.634  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|||||||++.+++-
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999999863

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=93.81  E-value=0.029  Score=53.66  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      --|+|+|++|||||||++.|...
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            36899999999999999999854

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=93.67  E-value=0.028  Score=52.12  Aligned_cols=20  Identities=30%  Similarity=0.554  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~   83 (592)
                      -++|+|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            58899999999999999865

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=93.48  E-value=0.038  Score=52.50  Aligned_cols=23  Identities=35%  Similarity=0.560  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .-|+|+|++|||||||+++|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999853

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=93.40  E-value=0.042  Score=52.40  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=21.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .....|+|+|++|+|||||++.+.+
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999998874

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=93.31  E-value=0.042  Score=57.77  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNT   86 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~   86 (592)
                      .++|+|++|||||||+|.|++..
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCccHHHHHHHHhccc
Confidence            78999999999999999999654

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=93.21  E-value=0.048  Score=49.44  Aligned_cols=21  Identities=14%  Similarity=0.146  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+|+|.+||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999974

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=93.18  E-value=0.043  Score=51.53  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNT   86 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~   86 (592)
                      ..|+|+|++|||||||++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            479999999999999999998643

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=93.13  E-value=0.046  Score=49.94  Aligned_cols=21  Identities=24%  Similarity=0.369  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+|+|.+|||||||++.|..
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999984

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=93.05  E-value=0.048  Score=49.15  Aligned_cols=20  Identities=25%  Similarity=0.463  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q psy1524          63 HKVVVMGGPKVGKSSIIHRF   82 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL   82 (592)
                      .-|+|+|.+||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            36899999999999999999

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=92.88  E-value=0.054  Score=49.46  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..|+|+|.+||||||+.++|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999985

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=92.84  E-value=0.053  Score=50.16  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNT   86 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~   86 (592)
                      .++|+|+.|+|||||++.+++..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            68999999999999999998654

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=92.83  E-value=0.054  Score=50.45  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      -|+|+|++|||||||++.+..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999984

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=92.80  E-value=0.061  Score=50.96  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...|+|+|++|+|||||++.+.+
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999885

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=92.66  E-value=0.062  Score=52.55  Aligned_cols=21  Identities=29%  Similarity=0.637  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~   83 (592)
                      ..|+|+|++|||||||++.+.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999999998

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=92.64  E-value=0.052  Score=53.37  Aligned_cols=21  Identities=29%  Similarity=0.374  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .++|+|++|||||||++-+.+
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            689999999999999998874

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=92.63  E-value=0.058  Score=51.02  Aligned_cols=22  Identities=41%  Similarity=0.522  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      -.|+|+|.+|||||||++.|.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999974

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=92.54  E-value=0.07  Score=49.23  Aligned_cols=22  Identities=32%  Similarity=0.372  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..|+|.|.+||||||+++.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999874

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=92.52  E-value=0.059  Score=55.01  Aligned_cols=21  Identities=38%  Similarity=0.570  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~   83 (592)
                      -.++|+|++|||||||+|.+.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            378999999999999999998

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=92.49  E-value=0.067  Score=50.85  Aligned_cols=21  Identities=29%  Similarity=0.544  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      +|+|+|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999973

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=92.49  E-value=0.063  Score=50.52  Aligned_cols=23  Identities=9%  Similarity=0.248  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .-|+|+|.+|+|||||+++++..
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            46899999999999999999853

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=92.47  E-value=0.069  Score=49.24  Aligned_cols=21  Identities=33%  Similarity=0.463  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+|+|.+||||||+++.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999984

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=92.45  E-value=0.092  Score=48.13  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..|+|+|.+|+|||||++.|..
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999999874

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=92.44  E-value=0.053  Score=55.21  Aligned_cols=24  Identities=25%  Similarity=0.248  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNT   86 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~   86 (592)
                      -.++|+|++|||||||+|.+.+..
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccc
Confidence            368999999999999999998643

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=92.40  E-value=0.073  Score=49.66  Aligned_cols=21  Identities=29%  Similarity=0.412  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+|+|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999984

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=92.40  E-value=0.1  Score=49.39  Aligned_cols=26  Identities=12%  Similarity=0.234  Sum_probs=22.2

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .....|+|+|.+|+|||||++.|...
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            34468999999999999999999853

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=92.39  E-value=0.097  Score=49.31  Aligned_cols=23  Identities=22%  Similarity=0.196  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...|+|.|.+||||||+++.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999999974

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=92.39  E-value=0.064  Score=50.59  Aligned_cols=22  Identities=36%  Similarity=0.368  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..|+|+|.+|||||||++.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999974

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=92.37  E-value=0.059  Score=52.54  Aligned_cols=22  Identities=23%  Similarity=0.292  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|||||||++-+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999988753

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=92.30  E-value=0.073  Score=50.65  Aligned_cols=21  Identities=33%  Similarity=0.499  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      +|+|+|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999973

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=92.30  E-value=0.091  Score=49.47  Aligned_cols=25  Identities=20%  Similarity=0.438  Sum_probs=21.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .....|+|+|.+||||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3446899999999999999999974

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=92.24  E-value=0.072  Score=50.14  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .+|+|+|.+||||||+++.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999986

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=92.22  E-value=0.11  Score=48.80  Aligned_cols=23  Identities=26%  Similarity=0.563  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...|+|+|.+||||||+.+.|..
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999984

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=92.19  E-value=0.067  Score=50.91  Aligned_cols=24  Identities=21%  Similarity=0.236  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNT   86 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~   86 (592)
                      --++|+|++|||||||++.+++..
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            378999999999999999998643

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=92.17  E-value=0.064  Score=51.04  Aligned_cols=22  Identities=36%  Similarity=0.594  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      +|+|+|++|+|||||++.+++.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999998853

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=92.15  E-value=0.09  Score=48.17  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .-|+|+|.+||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999984

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=92.14  E-value=0.082  Score=49.93  Aligned_cols=22  Identities=18%  Similarity=0.295  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      -.|+|+|.+||||||+...|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3799999999999999999984

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=92.13  E-value=0.074  Score=52.56  Aligned_cols=22  Identities=23%  Similarity=0.244  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|+|||||++.+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999854

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=92.06  E-value=0.08  Score=50.58  Aligned_cols=22  Identities=14%  Similarity=0.243  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..|+|+|.+|+||||+++.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999874

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=92.03  E-value=0.97  Score=45.99  Aligned_cols=21  Identities=19%  Similarity=0.294  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~   85 (592)
                      ++|+|++|+|||||++.+.+.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999998863

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=92.02  E-value=0.051  Score=52.58  Aligned_cols=22  Identities=18%  Similarity=0.383  Sum_probs=15.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHH-cC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFL-YN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~-~~   85 (592)
                      -|+|+|++|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            68999999999999999998 54

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=92.01  E-value=0.048  Score=51.16  Aligned_cols=21  Identities=24%  Similarity=0.542  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+|+|++|+|||||++.+++
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999984

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=92.00  E-value=0.076  Score=50.21  Aligned_cols=22  Identities=23%  Similarity=0.179  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..|+|+|.+|+|||||++.|.+
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999874

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=91.98  E-value=0.11  Score=48.10  Aligned_cols=23  Identities=22%  Similarity=0.449  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...|+|+|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999974

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=91.97  E-value=0.096  Score=48.34  Aligned_cols=23  Identities=35%  Similarity=0.547  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...|+|+|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999873

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=91.92  E-value=0.072  Score=53.27  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|||||||++.+++-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999998753

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=91.91  E-value=0.075  Score=53.16  Aligned_cols=22  Identities=27%  Similarity=0.375  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      =.|+|+|++|+|||||++.+.+
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHH
Confidence            3799999999999999999885

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=91.88  E-value=0.079  Score=52.13  Aligned_cols=21  Identities=38%  Similarity=0.507  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .++|+|++|+|||||++.+++
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~G   53 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLA   53 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            789999999999999999874

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=91.86  E-value=0.11  Score=48.81  Aligned_cols=23  Identities=22%  Similarity=0.026  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...|+|.|.+||||||+++.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999999984

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=91.84  E-value=0.1  Score=48.09  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...|+|+|.+||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999973

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=91.83  E-value=0.082  Score=52.15  Aligned_cols=22  Identities=23%  Similarity=0.182  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|+|||||++-+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999998854

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=91.79  E-value=0.082  Score=52.40  Aligned_cols=22  Identities=18%  Similarity=0.234  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|+|||||++.+++-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999998754

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=91.77  E-value=0.076  Score=53.63  Aligned_cols=22  Identities=32%  Similarity=0.529  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|||||||++.+++-
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999998853

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=91.77  E-value=0.079  Score=51.49  Aligned_cols=22  Identities=18%  Similarity=0.286  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|+.|+|||||++-+++-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999998754

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=91.69  E-value=0.078  Score=52.78  Aligned_cols=22  Identities=23%  Similarity=0.302  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|+|||||++-+++-
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999998854

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=91.68  E-value=0.071  Score=49.29  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -.++|+|++|+|||||++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998753

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=91.67  E-value=0.08  Score=53.13  Aligned_cols=22  Identities=23%  Similarity=0.359  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|+|||||++.+.+-
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6889999999999999999854

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=91.63  E-value=0.089  Score=51.43  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|+.|+|||||++.+++-
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999998853

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=91.61  E-value=0.088  Score=54.08  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .|+|+|++|+|||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            8999999999999999998853

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=91.61  E-value=0.11  Score=49.10  Aligned_cols=22  Identities=32%  Similarity=0.356  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      +.|+|+|.+||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999985

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=91.60  E-value=0.1  Score=48.20  Aligned_cols=22  Identities=18%  Similarity=0.270  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..|+|+|.+||||||+...|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999973

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=91.54  E-value=0.092  Score=52.03  Aligned_cols=22  Identities=23%  Similarity=0.223  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|+|||||++-+++-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999864

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=91.49  E-value=0.094  Score=52.56  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|+.|||||||++-+++-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999864

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=91.46  E-value=0.086  Score=51.91  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|+.|+|||||++-+++-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999998853

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=91.44  E-value=0.087  Score=52.82  Aligned_cols=22  Identities=32%  Similarity=0.395  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|+|||||++-+++-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            6889999999999999998753

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=91.36  E-value=0.091  Score=54.80  Aligned_cols=24  Identities=25%  Similarity=0.535  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .-+++|+|++|+|||||++.+.+-
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999854

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=91.34  E-value=0.55  Score=50.77  Aligned_cols=24  Identities=29%  Similarity=0.317  Sum_probs=19.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHH
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~   83 (592)
                      .+..-|+|+|..++|||+|+|.|+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCchhHHHHHHH
Confidence            355677799999999999999554

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=91.33  E-value=0.092  Score=52.21  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|+.|+|||||++.+.+-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6899999999999999998753

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=91.33  E-value=0.097  Score=52.27  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|+|||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            7899999999999999998853

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=91.28  E-value=0.11  Score=49.61  Aligned_cols=21  Identities=19%  Similarity=0.551  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      +|+|+|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999974

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=91.27  E-value=0.13  Score=47.98  Aligned_cols=26  Identities=15%  Similarity=0.088  Sum_probs=22.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .....|+|+|.+||||||+.+.|...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            34578999999999999999999853

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=91.26  E-value=0.084  Score=50.99  Aligned_cols=22  Identities=18%  Similarity=0.134  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|+.|+|||||++.+++-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=91.23  E-value=0.095  Score=52.32  Aligned_cols=22  Identities=14%  Similarity=0.143  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|+.|+|||||++-+++-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999998854

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=91.22  E-value=0.1  Score=52.53  Aligned_cols=22  Identities=18%  Similarity=0.193  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|+|||||++-+++-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999998854

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=91.17  E-value=0.1  Score=52.71  Aligned_cols=22  Identities=18%  Similarity=0.277  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|+.|+|||||++-+++-
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6889999999999999998853

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=91.14  E-value=0.11  Score=47.08  Aligned_cols=23  Identities=30%  Similarity=0.608  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -.|+|.|++|+|||+|++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988853

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=91.11  E-value=0.15  Score=47.60  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...|+|+|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999984

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=90.97  E-value=0.14  Score=47.89  Aligned_cols=23  Identities=22%  Similarity=0.237  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      ..|+|+|.+||||||+++.|...
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            57999999999999999999853

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=90.95  E-value=0.15  Score=50.02  Aligned_cols=24  Identities=17%  Similarity=0.318  Sum_probs=21.4

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...+|+|+|.+||||||+..+|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999999973

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=90.94  E-value=0.06  Score=50.86  Aligned_cols=21  Identities=14%  Similarity=0.316  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      -|+|+|.+|||||||++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999973

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=90.90  E-value=0.1  Score=51.84  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|+|||||++.+++-
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999998854

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=90.87  E-value=0.13  Score=49.58  Aligned_cols=22  Identities=32%  Similarity=0.601  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..|+|+|.+||||||+++.|..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999984

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=90.81  E-value=0.11  Score=52.07  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|+.|+|||||++-+++-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            7889999999999999998753

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=90.77  E-value=0.14  Score=47.17  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...|+|+|.+|+||||+++.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            34789999999999999999973

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=90.73  E-value=0.14  Score=48.89  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..|+|+|.+||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999974

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=90.72  E-value=0.14  Score=46.28  Aligned_cols=21  Identities=19%  Similarity=0.192  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999974

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=90.69  E-value=0.17  Score=51.88  Aligned_cols=25  Identities=24%  Similarity=0.213  Sum_probs=21.9

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ....-|+|+|++|||||||++.+.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            4457899999999999999998884

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=90.67  E-value=0.15  Score=47.28  Aligned_cols=22  Identities=27%  Similarity=0.590  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..|+|+|.+||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999973

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=90.62  E-value=0.14  Score=49.07  Aligned_cols=23  Identities=22%  Similarity=0.494  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...|+|+|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999974

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=90.60  E-value=0.15  Score=49.80  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...|+|+|+.|+|||||++.|.+
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=90.58  E-value=0.094  Score=53.87  Aligned_cols=21  Identities=24%  Similarity=0.488  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+|+|++|+|||||++-+.+
T Consensus        82 ~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTT
T ss_pred             EEEEECCCCchHHHHHHHHHc
Confidence            789999999999999988874

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=90.58  E-value=0.18  Score=46.34  Aligned_cols=22  Identities=32%  Similarity=0.563  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..|+|+|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999974

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=90.53  E-value=0.13  Score=47.33  Aligned_cols=21  Identities=24%  Similarity=0.335  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      +|+|+|.+|+||||+...|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999999973

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=90.47  E-value=0.18  Score=51.24  Aligned_cols=25  Identities=16%  Similarity=0.058  Sum_probs=21.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .....|+|+|.+|||||||++.|..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998873

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=90.46  E-value=0.13  Score=51.49  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|+|||||++-+++-
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999998864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=90.41  E-value=0.14  Score=48.51  Aligned_cols=22  Identities=23%  Similarity=0.443  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -++|+|++|+|||||+..++..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6889999999999999999843

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=90.34  E-value=0.15  Score=49.11  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+|+|+|||||+|+..+|+.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999984

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=90.34  E-value=0.13  Score=49.19  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..|+|+|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999974

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=90.29  E-value=0.16  Score=47.73  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...|+|+|.+||||||+++.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999984

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=90.28  E-value=0.22  Score=46.14  Aligned_cols=24  Identities=29%  Similarity=0.325  Sum_probs=20.9

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ....|+|+|.+|+||||+++.|..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999999874

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=90.18  E-value=0.19  Score=47.58  Aligned_cols=24  Identities=17%  Similarity=0.260  Sum_probs=21.1

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ....|+|+|.+|+|||||++.|..
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999874

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=90.15  E-value=0.17  Score=46.74  Aligned_cols=21  Identities=14%  Similarity=0.180  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999974

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=90.14  E-value=0.16  Score=48.90  Aligned_cols=21  Identities=14%  Similarity=0.191  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+|+|.+||||||+++.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999973

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=90.12  E-value=0.14  Score=53.81  Aligned_cols=37  Identities=14%  Similarity=0.314  Sum_probs=27.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEE
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHL  110 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v  110 (592)
                      -++|+|++|||||||++.+.+-.-     ++     ...+.++|..+
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~~-----p~-----~G~I~i~G~~i   68 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFEQ-----PD-----SGEISLSGKTI   68 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC-----CS-----EEEEEETTEEE
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC-----CC-----CcEEEECCEEC
Confidence            689999999999999999985422     22     34566777544

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=90.11  E-value=0.14  Score=52.43  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .-.|+|+|++|||||||++.+.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34789999999999999999884

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=90.08  E-value=0.17  Score=47.07  Aligned_cols=22  Identities=23%  Similarity=0.590  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..|+|+|.+||||||+.+.|..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999974

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=90.00  E-value=0.15  Score=49.79  Aligned_cols=21  Identities=29%  Similarity=0.515  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~   85 (592)
                      |+|+|++|+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999999853

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=89.99  E-value=0.18  Score=48.75  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...|+|+|.+||||||+.+.|..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999974

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=89.97  E-value=0.18  Score=50.96  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=21.2

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...-|+|+|++|||||||+.+|..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999984

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=89.95  E-value=0.11  Score=47.23  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|+|||+|++.+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999998853

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=89.91  E-value=0.57  Score=44.64  Aligned_cols=50  Identities=6%  Similarity=0.010  Sum_probs=35.6

Q ss_pred             HHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcc
Q psy1524         183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLAD  236 (592)
Q Consensus       183 ~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~  236 (592)
                      ...+..+|.+|++...+ ..+...+...+..+....   +.++.+|.|++|...
T Consensus        85 ~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~  134 (209)
T 3cwq_A           85 EALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYP  134 (209)
T ss_dssp             HHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred             HHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence            34567899999998854 455666666666665532   567899999998653

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=89.90  E-value=0.15  Score=53.43  Aligned_cols=23  Identities=22%  Similarity=0.494  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -.|+|+|++|+|||||++.+++-
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            37999999999999999999853

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=89.89  E-value=0.15  Score=51.89  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|+.|+|||||++.+++-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6889999999999999998753

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=89.87  E-value=0.17  Score=47.43  Aligned_cols=22  Identities=18%  Similarity=0.401  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..|+|+|.+|+|||||+.+++.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999984

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=89.83  E-value=0.21  Score=51.66  Aligned_cols=25  Identities=20%  Similarity=0.177  Sum_probs=21.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...+-|+|+|++|||||||++.|..
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998874

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=89.76  E-value=0.16  Score=53.27  Aligned_cols=22  Identities=23%  Similarity=0.265  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -++|+|++|||||||++-+.+-
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6889999999999999999854

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=89.75  E-value=0.15  Score=53.36  Aligned_cols=21  Identities=33%  Similarity=0.414  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+|+|++|+|||||++.+++
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            799999999999999999884

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=89.70  E-value=0.2  Score=49.16  Aligned_cols=24  Identities=29%  Similarity=0.414  Sum_probs=21.4

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..+.|+|.|.+||||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999874

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=89.59  E-value=0.2  Score=49.37  Aligned_cols=22  Identities=18%  Similarity=0.285  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHH
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~   83 (592)
                      ...|+|+|++|||||||++.|.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3589999999999999999998

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=89.59  E-value=0.17  Score=53.19  Aligned_cols=22  Identities=18%  Similarity=0.221  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|||||||++-+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHCC
Confidence            6889999999999999999854

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=89.57  E-value=0.19  Score=45.64  Aligned_cols=21  Identities=10%  Similarity=0.282  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+|+|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999999974

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=89.56  E-value=0.18  Score=49.91  Aligned_cols=21  Identities=14%  Similarity=0.205  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      -|+|+|++|+|||||..+|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999974

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=89.56  E-value=0.17  Score=53.17  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|||||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            6889999999999999999854

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=89.51  E-value=0.17  Score=53.53  Aligned_cols=22  Identities=27%  Similarity=0.309  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -++|+|++|||||||++.+.+-
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl   52 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGL   52 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHcC
Confidence            6889999999999999999854

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=89.51  E-value=0.17  Score=51.73  Aligned_cols=23  Identities=13%  Similarity=0.258  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .--|+|+|++|||||||++.+.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            35789999999999999999884

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=89.51  E-value=0.17  Score=53.22  Aligned_cols=22  Identities=27%  Similarity=0.285  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -++|+|++|||||||++.+.+-
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHhcC
Confidence            6789999999999999988853

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=89.40  E-value=0.19  Score=46.27  Aligned_cols=21  Identities=29%  Similarity=0.444  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      -.+|+|+.|+|||||+..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999873

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=89.37  E-value=0.18  Score=53.23  Aligned_cols=22  Identities=14%  Similarity=0.259  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -++|+|++|||||||++-+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCcHHHHHHHHHHcC
Confidence            6889999999999999999854

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=89.36  E-value=0.18  Score=50.65  Aligned_cols=20  Identities=25%  Similarity=0.443  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q psy1524          65 VVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~   84 (592)
                      |+|+|++|+|||||++.+.+
T Consensus        47 vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            99999999999999999985

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=89.34  E-value=0.18  Score=52.30  Aligned_cols=24  Identities=17%  Similarity=0.246  Sum_probs=21.2

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..--|+|+|++|||||||++.+.+
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999884

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=89.33  E-value=0.23  Score=50.53  Aligned_cols=24  Identities=21%  Similarity=0.221  Sum_probs=21.2

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ....|+|+|++|+|||||++.|.+
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999885

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=89.30  E-value=0.19  Score=47.33  Aligned_cols=21  Identities=19%  Similarity=0.127  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      -++|+|++|+|||||+..++.
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999996

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=89.29  E-value=0.18  Score=53.13  Aligned_cols=22  Identities=18%  Similarity=0.267  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|||||||++-+.+-
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            6889999999999999998854

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=89.23  E-value=0.17  Score=45.86  Aligned_cols=23  Identities=26%  Similarity=0.642  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -.|+|.|++|+|||+|+..+...
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988743

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=89.16  E-value=0.19  Score=52.86  Aligned_cols=22  Identities=27%  Similarity=0.375  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      -.|+|+|++|+|||||++.+++
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3699999999999999999985

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=89.13  E-value=0.14  Score=49.62  Aligned_cols=25  Identities=20%  Similarity=0.336  Sum_probs=21.4

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      ...-|+|+|..|||||||++.+.+.
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            3467999999999999999998753

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=89.07  E-value=0.21  Score=47.92  Aligned_cols=22  Identities=23%  Similarity=0.369  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -++|+|++|+|||||+..++..
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            7899999999999999999964

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=89.07  E-value=0.16  Score=52.47  Aligned_cols=22  Identities=32%  Similarity=0.539  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .|+|+|++|+|||||++.+++-
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999854

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=89.06  E-value=0.26  Score=46.89  Aligned_cols=23  Identities=35%  Similarity=0.479  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .+.|+|.|.+||||||+++.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999974

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=88.96  E-value=0.17  Score=46.39  Aligned_cols=22  Identities=23%  Similarity=0.223  Sum_probs=15.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..|+|.|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999973

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=88.87  E-value=0.26  Score=45.33  Aligned_cols=23  Identities=17%  Similarity=0.148  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...|+|+|.+|+||||+++.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999874

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=88.86  E-value=0.19  Score=50.33  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -++|+|++|+|||||+..++..
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            6899999999999999999854

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=88.83  E-value=0.16  Score=53.08  Aligned_cols=22  Identities=18%  Similarity=0.234  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -++|+|++|||||||++-+.+-
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCccHHHHHHHHHcC
Confidence            6889999999999999999854

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=88.76  E-value=0.23  Score=45.82  Aligned_cols=21  Identities=43%  Similarity=0.553  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+|+|.+||||||+...|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999999874

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=88.72  E-value=0.21  Score=47.32  Aligned_cols=22  Identities=23%  Similarity=0.392  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      -.|+|.|++|+|||+|+..+..
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999874

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=88.67  E-value=0.21  Score=49.59  Aligned_cols=21  Identities=29%  Similarity=0.515  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~   85 (592)
                      |+|+|++|+|||||++.+.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            999999999999999999853

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=88.57  E-value=0.27  Score=48.59  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..|+|+|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999999874

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=88.51  E-value=0.21  Score=52.97  Aligned_cols=21  Identities=33%  Similarity=0.612  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .++|+|++|||||||++.+.+
T Consensus        49 ~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhC
Confidence            689999999999999998884

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=88.51  E-value=1.4  Score=39.10  Aligned_cols=21  Identities=14%  Similarity=0.145  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+|.|++|+|||+|+..+..
T Consensus        29 ~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A           29 PVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             CEEEEEETTCCHHHHHGGGCC
T ss_pred             cEEEECCCCccHHHHHHHHHH
Confidence            599999999999999987763

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=88.49  E-value=0.3  Score=47.55  Aligned_cols=23  Identities=30%  Similarity=0.683  Sum_probs=19.0

Q ss_pred             ceE-EEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHK-VVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iK-IvIvG~~nVGKSSLInrL~~   84 (592)
                      ..| |+|+|+|||||+|+..+|+.
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            334 55789999999999999984

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=88.09  E-value=0.23  Score=48.86  Aligned_cols=24  Identities=17%  Similarity=0.148  Sum_probs=21.3

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ....|+|+|.+||||||+...|..
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999984

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=88.09  E-value=0.25  Score=46.27  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -++|.|++|+|||+|+..+...
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998743

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=87.95  E-value=0.24  Score=50.85  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999999853

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=87.94  E-value=0.26  Score=46.85  Aligned_cols=22  Identities=18%  Similarity=0.184  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..|+|+|.+|+||||+++.|..
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999873

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=87.94  E-value=0.26  Score=51.42  Aligned_cols=23  Identities=22%  Similarity=0.475  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      =+++|+|++|||||||++.+++.
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            38999999999999999999965

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=87.93  E-value=0.16  Score=53.20  Aligned_cols=22  Identities=14%  Similarity=0.261  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|||||||++-+.+-
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6889999999999999998854

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=87.93  E-value=0.24  Score=53.05  Aligned_cols=22  Identities=27%  Similarity=0.297  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -|+|+|++|+|||||++.+++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999999853

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=87.85  E-value=0.3  Score=48.15  Aligned_cols=24  Identities=29%  Similarity=0.242  Sum_probs=20.8

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..+.|+|+|++|+|||||.+.+..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999999873

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=87.79  E-value=0.3  Score=51.21  Aligned_cols=28  Identities=18%  Similarity=0.069  Sum_probs=23.0

Q ss_pred             ecCCeEEeecccCcchHHHHHHHHHHhh
Q psy1524         351 WENGFVEASAKDNTNITQVFKELLVQAK  378 (592)
Q Consensus       351 ~~~~fvEiSAK~~~nI~~lf~e~v~~ak  378 (592)
                      ..+.++++||+++.||..+|...+..+.
T Consensus       325 ~~~~~~~tSA~d~~nV~~vF~~v~~~i~  352 (362)
T 1zcb_A          325 RPLYHHFTTAINTENIRLVFRDVKDTIL  352 (362)
T ss_dssp             -CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEecCCchhHHHHHHHHHHHHH
Confidence            4557889999999999999998876653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=87.69  E-value=0.26  Score=51.71  Aligned_cols=23  Identities=13%  Similarity=0.258  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .-.|+|+|++|||||||++.+.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            45789999999999999999884

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=87.68  E-value=0.39  Score=46.72  Aligned_cols=24  Identities=17%  Similarity=0.253  Sum_probs=21.1

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...-|+|.|.+||||||+++.|..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999999984

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=87.68  E-value=0.28  Score=45.95  Aligned_cols=23  Identities=17%  Similarity=0.278  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -.|+|.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988843

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=87.65  E-value=0.2  Score=51.35  Aligned_cols=23  Identities=17%  Similarity=0.330  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      --++|+|..|+|||||++.+.+.
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cEEEEEecCCCCHHHHHHHHHhh
Confidence            35789999999999999999965

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=87.64  E-value=0.33  Score=44.06  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      -.|+|.|.+||||||+...|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999874

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=87.62  E-value=0.28  Score=47.97  Aligned_cols=21  Identities=24%  Similarity=0.411  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+|+|++|+|||+|++.+.+
T Consensus        47 ~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHH
Confidence            599999999999999999985

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=87.14  E-value=0.43  Score=47.88  Aligned_cols=23  Identities=26%  Similarity=0.222  Sum_probs=21.0

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHH
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~   83 (592)
                      ..+.|+|+|.+||||||+.+.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999997

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=87.14  E-value=0.27  Score=48.86  Aligned_cols=22  Identities=14%  Similarity=0.175  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      -.|+|+|.+|+||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999974

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=87.07  E-value=0.31  Score=53.58  Aligned_cols=22  Identities=18%  Similarity=0.439  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .|+|+|++|||||||++.+++-
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5999999999999999999853

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=87.03  E-value=0.29  Score=53.58  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=20.8

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..-.|+|+|.+|||||||++.|.+
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHH
Confidence            345789999999999999999884

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=86.92  E-value=0.33  Score=46.52  Aligned_cols=22  Identities=41%  Similarity=0.816  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -++|+|++|+|||||+.+++..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999888743

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=86.89  E-value=0.31  Score=52.42  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      +++|+|++|||||||++.+++.
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            8999999999999999999865

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=86.86  E-value=0.33  Score=48.54  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..|+|+|.+||||||+.++|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999985

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=86.58  E-value=0.3  Score=52.87  Aligned_cols=23  Identities=30%  Similarity=0.585  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -.|+|+|++|||||||++-+++-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            37999999999999999999854

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=86.28  E-value=0.41  Score=43.43  Aligned_cols=20  Identities=30%  Similarity=0.506  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~   83 (592)
                      -.+|+|+.|+|||||+..+.
T Consensus        25 ~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            35799999999999999876

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=86.17  E-value=0.36  Score=47.99  Aligned_cols=22  Identities=14%  Similarity=0.081  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      --++|+|++|+|||||+..++.
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3789999999999999999985

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=85.81  E-value=0.38  Score=46.55  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      ...|+|+|++|+|||+|...|...
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999999854

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=85.67  E-value=0.39  Score=47.45  Aligned_cols=23  Identities=17%  Similarity=0.387  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -.|+|.|++|+|||+|+..+...
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            36999999999999999999853

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=85.54  E-value=0.42  Score=52.71  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNT   86 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~   86 (592)
                      =.++|+|+.|+|||||++-+.+-.
T Consensus        48 e~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           48 MVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            379999999999999999998653

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=85.52  E-value=0.42  Score=46.35  Aligned_cols=22  Identities=18%  Similarity=0.391  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      -.|+|.|++|+|||+|+..+..
T Consensus        40 ~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999985

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=85.41  E-value=0.38  Score=53.43  Aligned_cols=22  Identities=27%  Similarity=0.305  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|+|||||++-+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            7899999999999999998753

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=85.36  E-value=0.4  Score=48.88  Aligned_cols=22  Identities=18%  Similarity=0.418  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      --|+|.|++|+|||||++.+.+
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999885

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=85.32  E-value=0.41  Score=47.65  Aligned_cols=22  Identities=18%  Similarity=0.365  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      -.|+|.|++|+|||+|++.+..
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            4799999999999999999985

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=85.19  E-value=0.43  Score=49.86  Aligned_cols=19  Identities=37%  Similarity=0.433  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q psy1524          65 VVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~   83 (592)
                      ++|+|+.|+|||||++.++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5699999999999999987

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=85.15  E-value=0.43  Score=53.03  Aligned_cols=22  Identities=32%  Similarity=0.416  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|+|||||++-+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999998854

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=85.13  E-value=0.56  Score=44.52  Aligned_cols=25  Identities=20%  Similarity=0.190  Sum_probs=22.3

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...+.|+|+|.+||||||+.+.|..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            4568899999999999999999984

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=85.07  E-value=0.42  Score=52.15  Aligned_cols=21  Identities=29%  Similarity=0.485  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .++|+|++|||||||++.+++
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            689999999999999998885

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=84.61  E-value=0.58  Score=45.24  Aligned_cols=25  Identities=16%  Similarity=0.210  Sum_probs=21.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .....|+|+|.+|+||||+.+.|..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999874

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=84.50  E-value=0.57  Score=43.68  Aligned_cols=21  Identities=33%  Similarity=0.381  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+|.|.+|+||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999874

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=84.49  E-value=0.61  Score=46.53  Aligned_cols=24  Identities=17%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ....|+|.|++|+|||+|+..+..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999987663

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=84.33  E-value=0.48  Score=50.03  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      -.|+|+|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3789999999999999999984

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=84.29  E-value=0.48  Score=47.98  Aligned_cols=21  Identities=14%  Similarity=0.300  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      -++|.|++|+|||+|++.+.+
T Consensus        39 ~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999999884

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=84.28  E-value=0.57  Score=41.79  Aligned_cols=23  Identities=17%  Similarity=0.170  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      ..|+|.|++|+|||+|...+...
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHh
Confidence            46999999999999999998754

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=84.26  E-value=0.52  Score=47.40  Aligned_cols=22  Identities=36%  Similarity=0.635  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -|+|.|+.|+|||||++.+...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            7899999999999999999853

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=84.18  E-value=0.5  Score=47.99  Aligned_cols=23  Identities=17%  Similarity=0.433  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .-.|+|+|.+||||||++..|..
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~  127 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAA  127 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999999873

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=84.12  E-value=0.49  Score=47.66  Aligned_cols=22  Identities=36%  Similarity=0.416  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -|+|.|++|+|||||++.+...
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~   53 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINE   53 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            7899999999999999999843

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=83.82  E-value=0.53  Score=48.28  Aligned_cols=22  Identities=18%  Similarity=0.469  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|.|++|+|||||++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998854

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=83.71  E-value=0.58  Score=48.71  Aligned_cols=22  Identities=27%  Similarity=0.377  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .-|+|+|++|||||+|...|..
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999984

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=83.69  E-value=0.55  Score=46.56  Aligned_cols=22  Identities=27%  Similarity=0.554  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..|+|.|++|+|||+|+..+..
T Consensus        51 ~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999884

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=83.67  E-value=0.54  Score=47.40  Aligned_cols=23  Identities=22%  Similarity=0.177  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .-|+|.|++|+|||+|+..+...
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46778899999999999998843

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=83.61  E-value=0.42  Score=47.09  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=21.0

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      +...|+|.|..||||||+++.|..
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999998874

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=83.60  E-value=0.54  Score=47.43  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -.|+|.|++|+|||+|++.+.+.
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            36999999999999999999853

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=83.58  E-value=6.7  Score=39.22  Aligned_cols=21  Identities=14%  Similarity=0.357  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~   85 (592)
                      +++.|++|+|||+++..+...
T Consensus        51 ~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHHH
Confidence            455566999999999999743

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=83.56  E-value=0.5  Score=52.19  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -++|+|+.|+|||||++-+++-
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6889999999999999999864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=83.46  E-value=0.55  Score=52.67  Aligned_cols=22  Identities=18%  Similarity=0.276  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|+.|+|||||++-+.+-
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            7899999999999999999864

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=83.40  E-value=0.53  Score=50.04  Aligned_cols=23  Identities=39%  Similarity=0.540  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..-|+|+|.+|||||||.++|..
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999974

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=83.38  E-value=4.1  Score=42.60  Aligned_cols=21  Identities=14%  Similarity=0.210  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      -|+|.|++|+|||+|+..++.
T Consensus        76 li~I~G~pGsGKTtlal~la~   96 (366)
T 1xp8_A           76 ITEIYGPESGGKTTLALAIVA   96 (366)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHHH
Confidence            577899999999999999884

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=83.26  E-value=0.72  Score=47.60  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .-|+|+|++|||||||..+|...
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHh
Confidence            35889999999999999999843

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=83.24  E-value=0.77  Score=45.20  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=21.7

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      ....|+|.|++|+|||+|+..+...
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4468999999999999999999853

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=83.22  E-value=0.61  Score=48.23  Aligned_cols=22  Identities=18%  Similarity=0.342  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999984

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=83.19  E-value=0.44  Score=53.17  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      =.++|+|++|+|||||++-+.+
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g  403 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMR  403 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhc
Confidence            3889999999999999998874

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=83.17  E-value=0.6  Score=48.63  Aligned_cols=22  Identities=18%  Similarity=0.308  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .-|+|+|++|||||||..+|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999999984

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=83.11  E-value=0.6  Score=47.79  Aligned_cols=23  Identities=17%  Similarity=0.265  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .--|+|+|.+||||||++..+..
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHH
Confidence            34688999999999999998884

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=82.78  E-value=0.89  Score=45.25  Aligned_cols=24  Identities=17%  Similarity=0.300  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .-.|+|+|++|+|||+|+..+...
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHH
Confidence            347999999999999999998853

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=82.75  E-value=0.78  Score=44.39  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..|+|.|..||||||+++.|..
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999984

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=82.73  E-value=0.61  Score=48.43  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      --+.|+|++|+|||||+..++..
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47889999999999999999965

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=82.65  E-value=0.52  Score=45.83  Aligned_cols=21  Identities=29%  Similarity=0.325  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .++|.|++|+|||+++..+++
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999988874

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=82.57  E-value=0.87  Score=46.91  Aligned_cols=22  Identities=18%  Similarity=0.357  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .-|+|+|++|||||+|..+|..
T Consensus        11 ~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHH
Confidence            3588999999999999999984

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=82.48  E-value=0.76  Score=43.51  Aligned_cols=24  Identities=21%  Similarity=0.432  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -.-|+|.|++|+|||||.-.|...
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            357899999999999999999964

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=82.36  E-value=0.4  Score=53.25  Aligned_cols=21  Identities=29%  Similarity=0.328  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .++|+|++|+|||||++.+.+
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g  389 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPR  389 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            789999999999999987764

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=82.25  E-value=0.46  Score=52.90  Aligned_cols=21  Identities=29%  Similarity=0.415  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .++|+|++|+|||||++.+.+
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g  391 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPR  391 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            789999999999999998874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=82.17  E-value=0.71  Score=50.89  Aligned_cols=22  Identities=14%  Similarity=0.294  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|+.|+|||||++.+++-
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl  335 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGV  335 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=82.13  E-value=0.65  Score=52.06  Aligned_cols=24  Identities=17%  Similarity=0.200  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNT   86 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~   86 (592)
                      =.++|+|+.|+|||||++-+.+-.
T Consensus       118 e~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          118 MVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhCCC
Confidence            378999999999999999998643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=82.02  E-value=0.62  Score=51.42  Aligned_cols=22  Identities=14%  Similarity=0.329  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|+.|+|||||++.+++-
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999854

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=81.99  E-value=0.69  Score=43.77  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      +.|+|+|.+|+||||+...|..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998874

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=81.95  E-value=0.77  Score=43.71  Aligned_cols=20  Identities=30%  Similarity=0.506  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~   83 (592)
                      -.+|+|+.|+|||||+..+.
T Consensus        25 ~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHH
Confidence            45789999999999999876

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=81.88  E-value=0.59  Score=47.68  Aligned_cols=22  Identities=18%  Similarity=0.315  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      -.|+|.|++|+|||+|++.+..
T Consensus        45 ~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           45 SNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCEEECBCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999999884

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=81.62  E-value=0.47  Score=47.97  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=17.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .+.|+|.|.+||||||+.+.|..
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999873

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=81.44  E-value=0.73  Score=46.65  Aligned_cols=21  Identities=29%  Similarity=0.457  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~   85 (592)
                      ++|.|++|+|||+|++.+...
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999998853

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=81.37  E-value=0.73  Score=47.10  Aligned_cols=21  Identities=29%  Similarity=0.464  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~   85 (592)
                      ++|.|++|+||||++..+.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999854

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=81.12  E-value=0.73  Score=50.43  Aligned_cols=19  Identities=32%  Similarity=0.480  Sum_probs=0.0

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q psy1524          65 VVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~   83 (592)
                      ++|+|++|+|||||++.|+
T Consensus        42 ~~l~G~nGsGKSTL~~~~l   60 (525)
T 1tf7_A           42 TLVSGTSGTGKTLFSIQFL   60 (525)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=81.10  E-value=0.75  Score=48.86  Aligned_cols=22  Identities=23%  Similarity=0.354  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      --++|+|++|+|||||+..|+-
T Consensus       179 ei~~I~G~sGsGKTTLl~~la~  200 (400)
T 3lda_A          179 SITELFGEFRTGKSQLCHTLAV  200 (400)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEcCCCCChHHHHHHHHH
Confidence            3689999999999999998873

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=80.93  E-value=0.8  Score=47.16  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      ..-|+|+|++|+|||||+..|+..
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhc
Confidence            357999999999999999999964

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=80.87  E-value=0.87  Score=43.49  Aligned_cols=22  Identities=32%  Similarity=0.753  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      --++|.|++|+|||+|+.+++.
T Consensus        31 ~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           31 TTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            3688999999999999998873

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=80.86  E-value=0.76  Score=47.04  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -.|+|.|++|+|||+|+..+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999843

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=80.84  E-value=0.84  Score=51.14  Aligned_cols=22  Identities=14%  Similarity=0.294  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|+.|+|||||++.+.+-
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl  405 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGV  405 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999864

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=80.72  E-value=0.79  Score=46.84  Aligned_cols=23  Identities=22%  Similarity=0.426  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -.|+|.|++|+|||+|+..+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            47999999999999999999854

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=80.55  E-value=0.82  Score=46.33  Aligned_cols=22  Identities=18%  Similarity=0.477  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .|+|.|++|+|||+|+..+...
T Consensus        57 ~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            5899999999999999999743

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=80.52  E-value=0.81  Score=46.94  Aligned_cols=21  Identities=14%  Similarity=0.224  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+|.|++|+|||+|++.+..
T Consensus        47 ~vll~G~~G~GKT~la~~l~~   67 (384)
T 2qby_B           47 SNLFLGLTGTGKTFVSKYIFN   67 (384)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999885

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=80.44  E-value=0.43  Score=46.77  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .|+|.|++|+|||+|+..+...
T Consensus        46 ~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3889999999999999999853

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=80.26  E-value=1  Score=44.31  Aligned_cols=24  Identities=17%  Similarity=0.391  Sum_probs=20.5

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..+++.|+|.+||||||+..+|..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            457999999999999999999974

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=80.24  E-value=1.1  Score=43.13  Aligned_cols=24  Identities=25%  Similarity=0.113  Sum_probs=20.9

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...-|+|.|.+||||||+++.|..
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999999873

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=80.14  E-value=0.2  Score=49.16  Aligned_cols=21  Identities=29%  Similarity=0.514  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~   85 (592)
                      ++|+|++|+|||||++.++.-
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~   50 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTA   50 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            468999999999999998854

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=80.10  E-value=0.94  Score=46.10  Aligned_cols=23  Identities=17%  Similarity=0.322  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .-.|+|.|++|+|||+|+..+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999998874

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=80.08  E-value=0.86  Score=46.33  Aligned_cols=23  Identities=22%  Similarity=0.372  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...|+|.|++|+|||+|+..+..
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            45799999999999999999984

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=80.01  E-value=0.67  Score=51.36  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      ...|+|+|.+|||||||++.|.+.
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHHh
Confidence            357999999999999999998843

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	592
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-16
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	0.001
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	4e-15
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	2e-14
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	1e-12
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-12
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-08
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	5e-12
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-11
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	4e-11
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	7e-11
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-10
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-04
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	4e-10
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	6e-10
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	8e-10
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	7e-05
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	9e-10
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-09
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-09
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	9e-09
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	4e-09
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	3e-08
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	4e-09
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-05
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	5e-09
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	1e-06
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	5e-09
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	2e-07
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	7e-09
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	3e-06
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	0.004
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	7e-09
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	4e-05
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	7e-09
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	4e-06
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-08
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	7e-08
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-08
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	4e-08
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-08
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	3e-08
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	0.001
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	0.002
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	4e-08
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	5e-04
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	4e-08
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	6e-08
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	6e-04
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	6e-04
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-07
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	2e-07
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-07
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	0.002
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-07
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	1e-05
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	0.004
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	2e-07
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-07
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	4e-07
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	6e-07
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	0.002
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	0.002
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	8e-07
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	0.004
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	0.004
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	1e-06
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-06
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-06
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	4e-06
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	0.002
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	0.002
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-05
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	9e-05
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-04
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	0.002
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-04
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	2e-04
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	3e-04
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	7e-04
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	8e-04
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	0.001
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	0.001
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	0.002
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	0.003
d1yrba1	244	c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09	0.003
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	0.003

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (186), Expect = 1e-16
 Identities = 41/247 (16%), Positives = 75/247 (30%), Gaps = 75/247 (30%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSG 123
           K VV+G   VGK+ ++  +  N F  +Y  T+      D     V               
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-----FDNYAVTVM-------------- 45

Query: 124 KGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA 183
                     G + + L                               T    ++  +R 
Sbjct: 46  ---------IGGEPYTLGLFD---------------------------TAGQEDYDRLRP 69

Query: 184 LSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
           LS    D F++ +++  P+SFE ++               P ++VG + DL D+   ++ 
Sbjct: 70  LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRDDPSTIE- 127

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF 303
                                      +  +T E + +      +VE SA     +  VF
Sbjct: 128 ------------------KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

Query: 304 KELLVQA 310
            E ++ A
Sbjct: 170 DEAILAA 176

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 13/58 (22%), Positives = 23/58 (39%)

Query: 320 LRRRRRQSLPPVQHSPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQA 377
           LR          ++   P+  +T E + +      +VE SA     +  VF E ++ A
Sbjct: 119 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 4e-15
 Identities = 37/248 (14%), Positives = 68/248 (27%), Gaps = 76/248 (30%)

Query: 60  DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
           D   K++ +G   VGK++ ++R+  N F+PK+  T+                        
Sbjct: 3   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFR------------------- 43

Query: 120 EQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFP 179
                  +   V       G      +  L                      T     F 
Sbjct: 44  -------EKRVVYNAQGPNGSSGKAFKVHLQLW------------------DTAGQERFR 78

Query: 180 AMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENR 239
           ++       A  F+L++ +    SF  +R     +          IV++GNK+DL D+  
Sbjct: 79  SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQRE 138

Query: 240 QVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299
             +                                         +   + E SA    N+
Sbjct: 139 VNERQARELAD--------------------------------KYGIPYFETSAATGQNV 166

Query: 300 TQVFKELL 307
            +  + LL
Sbjct: 167 EKAVETLL 174

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.4 bits (169), Expect = 2e-14
 Identities = 51/254 (20%), Positives = 89/254 (35%), Gaps = 96/254 (37%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQS 122
           K++++G   VGKS ++ RF+ + F+P +  TI  +   +   +NG  +KL I DT+G++ 
Sbjct: 4   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 63

Query: 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR 182
            + +                             Y+                         
Sbjct: 64  FRTI-------------------------TTAYYR------------------------- 73

Query: 183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
                 A   ILVY I D  +F  I+          A+    +++VGNKSD         
Sbjct: 74  -----GAMGIILVYDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSD--------- 118

Query: 243 LTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FVEASAKDNTNIT 300
                                      +    T +    +  E G  F+E+SAK++ N+ 
Sbjct: 119 --------------------------METRVVTADQGEALAKELGIPFIESSAKNDDNVN 152

Query: 301 QVFKEL--LVQAKV 312
           ++F  L  L+Q K+
Sbjct: 153 EIFFTLAKLIQEKI 166

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.9 bits (157), Expect = 1e-12
 Identities = 48/273 (17%), Positives = 91/273 (33%), Gaps = 94/273 (34%)

Query: 60  DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHH-EDFSMNGVHLKLDILDTS 118
           D   K++++G   VGKS ++ RF  +T++  Y  TI      +   ++G  +KL I DT+
Sbjct: 4   DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 63

Query: 119 GEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEF 178
           G++  + +                             Y+                     
Sbjct: 64  GQERFRTI-------------------------TSSYYR--------------------- 77

Query: 179 PAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADEN 238
                     +   I+VY + D  SF  +++    I     ST V  ++VGNK D     
Sbjct: 78  ---------GSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST-VLKLLVGNKCD----- 122

Query: 239 RQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWEN-GFVEASAKDNT 297
                                         D+   +   +    D     F+E SA D+T
Sbjct: 123 ----------------------------LKDKRVVEYDVAKEFADANKMPFLETSALDST 154

Query: 298 NITQVFKEL---LVQAKVKYNLSPALRRRRRQS 327
           N+   F  +   + ++  + NL+   +++  + 
Sbjct: 155 NVEDAFLTMARQIKESMSQQNLNETTQKKEDKG 187

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.2 bits (153), Expect = 2e-12
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 60  DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHH-EDFSMNGVHLKLDILDTS 118
           D   K++++G   VGK+ ++ RF  + F+  +  TI          ++G  +KL I DT+
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63

Query: 119 G 119
           G
Sbjct: 64  G 64

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (122), Expect = 3e-08
 Identities = 26/146 (17%), Positives = 44/146 (30%), Gaps = 37/146 (25%)

Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T     F  +       A   +LVY I +  SF+ IR    +I E  ++    +++    
Sbjct: 62  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 121

Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FV 289
                                                +     + E   ++  + G  F+
Sbjct: 122 -----------------------------------DVNDKRQVSKERGEKLALDYGIKFM 146

Query: 290 EASAKDNTNITQVFKELLVQAKVKYN 315
           E SAK N N+   F  L    K K +
Sbjct: 147 ETSAKANINVENAFFTLARDIKAKMD 172

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 5e-12
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 60  DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHE-DFSMNGVHLKLDILDTS 118
           D   K+V++G   VGK+ ++ RF    F P    TI          +NG  +KL I DT+
Sbjct: 3   DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 62

Query: 119 GEQSGKGL 126
           G++  + +
Sbjct: 63  GQERFRSI 70

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 2e-11
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 62  RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ 121
           R K+V++G    GK+ ++     + F   Y  T+ E +  D  ++G  ++L + DT+G +
Sbjct: 2   RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE 61

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 4e-11
 Identities = 47/244 (19%), Positives = 84/244 (34%), Gaps = 89/244 (36%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI-EEMHHEDFSMNGVHLKLDILDTSGEQS 122
           K+V +G   VGK+S+I RF+Y++F   Y+ TI  +   +   +    ++L + DT+G++ 
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE- 60

Query: 123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMR 182
                                   R  +  P   +                         
Sbjct: 61  ------------------------RFRSLIPSYIRDSAA--------------------- 75

Query: 183 ALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVD 242
                     ++VY I + NSF++     D +  T+  + V I++VGNK+DLAD      
Sbjct: 76  ---------AVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTDLAD------ 119

Query: 243 LTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV 302
                                      +            +    F+E SAK   N+ Q+
Sbjct: 120 --------------------------KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 153

Query: 303 FKEL 306
           F+ +
Sbjct: 154 FRRV 157

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (142), Expect = 7e-11
 Identities = 42/255 (16%), Positives = 72/255 (28%), Gaps = 89/255 (34%)

Query: 60  DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHE-DFSMNGVHLKLDILDTS 118
           D   K +V+G    GKS ++H+F+   F      TI         ++ G ++KL I DT+
Sbjct: 3   DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 62

Query: 119 GEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEF 178
           G++                         R  +     Y+                     
Sbjct: 63  GQE-------------------------RFRSVTRSYYRG-------------------- 77

Query: 179 PAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADEN 238
                     A   +LVY I    ++  +           +   + I++ GNK DL  + 
Sbjct: 78  ----------AAGALLVYDITSRETYNALTNWLTDARMLASQN-IVIILCGNKKDLDADR 126

Query: 239 RQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN 298
               L    F                                  + E  F+E SA    N
Sbjct: 127 EVTFLEASRFAQ--------------------------------ENELMFLETSALTGEN 154

Query: 299 ITQVFKELLVQAKVK 313
           + + F +   +   K
Sbjct: 155 VEEAFVQCARKILNK 169

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.2 bits (137), Expect = 3e-10
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 60  DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHH-EDFSMNGVHLKLDILDTS 118
           D   K++++G   VGK+S + R+  ++F+P +  T+      +    N   +KL I DT+
Sbjct: 3   DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 62

Query: 119 G 119
           G
Sbjct: 63  G 63

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 28/136 (20%), Positives = 43/136 (31%), Gaps = 33/136 (24%)

Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T     +  +       A  FIL+Y I +  SF  ++     I          +++VGNK
Sbjct: 61  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN-AQVLLVGNK 119

Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
            D                                   ++V        +       F EA
Sbjct: 120 CD--------------------------------MEDERVVSSERGRQLADHLGFEFFEA 147

Query: 292 SAKDNTNITQVFKELL 307
           SAKDN N+ Q F+ L+
Sbjct: 148 SAKDNINVKQTFERLV 163

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 4e-10
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSG 119
           K++++G   VGKSS++ RF  +TF P+   TI  +   +  S++G   KL I DT+G
Sbjct: 9   KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 65

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 6e-10
 Identities = 14/51 (27%), Positives = 28/51 (54%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDI 114
           K+ + G   VGKS+++ RFL   F  +Y  T+E  +    +++   + ++I
Sbjct: 4   KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEI 54

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 8e-10
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 58  GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEM-HHEDFSMNGVHLKLDILD 116
           G  +  KV+++G   VGKSS+++R++ N F  +   TI     ++D  ++G  + + I D
Sbjct: 2   GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 61

Query: 117 TSGEQSGKGL 126
           T+G++  + L
Sbjct: 62  TAGQERFRSL 71

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 7e-05
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 35/142 (24%)

Query: 169 LAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI---FETKASTAVPI 225
           +  T     F ++R      +D  +L +++DD  SF+ +   +       + K   + P 
Sbjct: 59  IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF 118

Query: 226 VVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWE 285
           V++GNK D+++                                     +  ++  + + +
Sbjct: 119 VILGNKIDISERQV--------------------------------STEEAQAWCRDNGD 146

Query: 286 NGFVEASAKDNTNITQVFKELL 307
             + E SAKD TN+   F+E +
Sbjct: 147 YPYFETSAKDATNVAAAFEEAV 168

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 9e-10
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 57  EGHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPK-YKRTIEEMHHE-DFSMNGVHLKLDI 114
           + +D   KV+++G   VGK+ ++ RF    F    +  T+          ++GV +KL +
Sbjct: 1   DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 60

Query: 115 LDTSGEQSGKGL 126
            DT+G++  + +
Sbjct: 61  WDTAGQERFRSV 72

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.1 bits (131), Expect = 2e-09
 Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEE-MHHEDFSMNGVHLKLDILDTSG 119
           KV+++G   VGK+S++++++   FS +YK TI      ++  ++   + + I DT+G
Sbjct: 4   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 60

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (130), Expect = 3e-09
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 60  DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEE-MHHEDFSMNGVHLKLDILDTS 118
           D   KVV++G   VGKS+++ RF  N F+ + K TI          ++G  +K  I DT+
Sbjct: 2   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 61

Query: 119 G 119
           G
Sbjct: 62  G 62

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 9e-09
 Identities = 27/143 (18%), Positives = 47/143 (32%), Gaps = 33/143 (23%)

Query: 169 LAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVV 228
           +  T     +  + +     A   +LVY I    ++E +      + +  A + + I++V
Sbjct: 57  IWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD-HADSNIVIMLV 115

Query: 229 GNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGF 288
           GNKSDL             F                                       F
Sbjct: 116 GNKSDLRHLRAVPTDEARAFAEK--------------------------------NNLSF 143

Query: 289 VEASAKDNTNITQVFKELLVQAK 311
           +E SA D+TN+ + FK +L +  
Sbjct: 144 IETSALDSTNVEEAFKNILTEIY 166

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 53.8 bits (128), Expect = 4e-09
 Identities = 20/66 (30%), Positives = 42/66 (63%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQS 122
           HKV+++G   VGKS++  +F+Y+ F   Y+ T  + + +   ++G  +++DILDT+G++ 
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 64

Query: 123 GKGLKC 128
              ++ 
Sbjct: 65  YAAIRD 70

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 51.1 bits (121), Expect = 3e-08
 Identities = 32/143 (22%), Positives = 53/143 (37%), Gaps = 32/143 (22%)

Query: 171 MTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGN 230
            T    ++ A+R     S + F+ V++I +  SF      R+ I   K    VP ++VGN
Sbjct: 58  DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 117

Query: 231 KSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVE 290
           KSDL D+ +                                            W   +VE
Sbjct: 118 KSDLEDKRQVSVEEAKNRAD--------------------------------QWNVNYVE 145

Query: 291 ASAKDNTNITQVFKELLVQAKVK 313
            SAK   N+ +VF +L+ + + +
Sbjct: 146 TSAKTRANVDKVFFDLMREIRAR 168

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 4e-09
 Identities = 25/58 (43%), Positives = 40/58 (68%)

Query: 62  RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
            HK+VV+GG  VGKS++  +F+ + F   Y  TIE+ + +  S++G+  +LDILDT+G
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 32/141 (22%)

Query: 171 MTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGN 230
            T    EF AMR   + +   F+LV+AI+D  SF E+  +   I   K     P+V+VGN
Sbjct: 60  DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGN 119

Query: 231 KSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVE 290
           K+DL                                   +    +  S         + E
Sbjct: 120 KADL--------------------------------ESQRQVPRSEASAFGASHHVAYFE 147

Query: 291 ASAKDNTNITQVFKELLVQAK 311
           ASAK   N+ + F++L+   +
Sbjct: 148 ASAKLRLNVDEAFEQLVRAVR 168

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 5e-09
 Identities = 23/59 (38%), Positives = 37/59 (62%)

Query: 61  TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
           T +K+VV+G   VGKS++  + + N F  +Y  TIE+ + +   ++G    LDILDT+G
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 37/143 (25%)

Query: 171 MTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGN 230
            T    E+ AMR   + + + F+ V+AI++  SFE+I   R+ I   K S  VP+V+VGN
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116

Query: 231 KSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--F 288
           K D                                          +     +    G  +
Sbjct: 117 KCD-----------------------------------LAARTVESRQAQDLARSYGIPY 141

Query: 289 VEASAKDNTNITQVFKELLVQAK 311
           +E SAK    +   F  L+ + +
Sbjct: 142 IETSAKTRQGVEDAFYTLVREIR 164

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 5e-09
 Identities = 23/56 (41%), Positives = 36/56 (64%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
           KVVV+G   VGKS++  +F+  TF  KY  TIE+ + ++  ++     L+ILDT+G
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 2e-07
 Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 32/136 (23%)

Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T  T +F +MR L I +   FILVY++ +  SF++I+ +RD I   K    VP+++VGNK
Sbjct: 58  TAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNK 117

Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
            DL  E       G                                     +W   F+E 
Sbjct: 118 VDLESEREVSSSEGRALAE--------------------------------EWGCPFMET 145

Query: 292 SAKDNTNITQVFKELL 307
           SAK  T + ++F E++
Sbjct: 146 SAKSKTMVDELFAEIV 161

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 7e-09
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTS 118
           K VV+G   VGK+ ++  +  N F  +Y  T+ + +  +  ++G  + L + DT+
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 3e-06
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 20/138 (14%)

Query: 169 LAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVV 228
           L  T    ++  +R LS    D  ++ +++  P SFE +R               PI++V
Sbjct: 57  LWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN-TPIILV 115

Query: 229 GNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGF 288
           G K DL D+   ++       T ++       A +I                       +
Sbjct: 116 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK-------------------Y 156

Query: 289 VEASAKDNTNITQVFKEL 306
           +E SA     +  VF E 
Sbjct: 157 LECSALTQRGLKTVFDEA 174

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 10/54 (18%), Positives = 19/54 (35%)

Query: 320 LRRRRRQSLPPVQHSPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKEL 373
           LR  +       +    P+ Y    ++ +      ++E SA     +  VF E 
Sbjct: 121 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 174

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.5 bits (127), Expect = 7e-09
 Identities = 13/48 (27%), Positives = 26/48 (54%)

Query: 62  RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVH 109
           + K+VV+G  + GK++++H F  + F   Y  T+ E +   F ++   
Sbjct: 2   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQR 49

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 4e-05
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 21/131 (16%)

Query: 181 MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQ 240
           +R LS   +DA ++ + I  P + + +          +      +++VG KSDL  +   
Sbjct: 66  VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI-QEFCPNTKMLLVGCKSDLRTDVST 124

Query: 241 VDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN-I 299
           +       QT +S                   YD   ++ +      ++E SA  + N +
Sbjct: 125 LVELSNHRQTPVS-------------------YDQGANMAKQIGAATYIECSALQSENSV 165

Query: 300 TQVFKELLVQA 310
             +F    +  
Sbjct: 166 RDIFHVATLAC 176

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 7e-09
 Identities = 21/56 (37%), Positives = 34/56 (60%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
           K+VV+G   VGKS++  +F+   F  KY  TIE+ + +   ++     L+ILDT+G
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 4e-06
 Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 31/136 (22%)

Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T  T +F AMR L + +   F LVY+I   ++F +++ +R+ I   K +  VP+++VGNK
Sbjct: 58  TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNK 117

Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEA 291
            D               +  +        A Q                        F+E+
Sbjct: 118 CD------------LEDERVVGKEQGQNLARQWCNCA-------------------FLES 146

Query: 292 SAKDNTNITQVFKELL 307
           SAK   N+ ++F +L+
Sbjct: 147 SAKSKINVNEIFYDLV 162

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 2e-08
 Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 47/162 (29%)

Query: 169 LAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVV 228
           +  T     F ++       A   +LVY I    +F  +    +   +  +S+ + I+++
Sbjct: 56  IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ-HSSSNMVIMLI 114

Query: 229 GNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG- 287
           GNKSD                                   +       E       E+G 
Sbjct: 115 GNKSD----------------------------------LESRRDVKREEGEAFAREHGL 140

Query: 288 -FVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSL 328
            F+E SAK   N+ + F     +          + R+ +Q L
Sbjct: 141 IFMETSAKTACNVEEAFINTAKE----------IYRKIQQGL 172

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 7e-08
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHH-EDFSMNGVHLKLDILDTSGEQS 122
           K +++G   VGKS ++ +F    F P +  TI         +++G  +KL I DT+G++S
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64

Query: 123 GKGL 126
            + +
Sbjct: 65  FRSI 68

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 2e-08
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHE-DFSMNGVHLKLDILDTSGEQS 122
           K +++G   VGKS ++H+F    F      TI          ++G  +KL I DT+G++ 
Sbjct: 6   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 65

Query: 123 GKGLKC 128
            + +  
Sbjct: 66  FRAVTR 71

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 4e-08
 Identities = 27/138 (19%), Positives = 42/138 (30%), Gaps = 37/138 (26%)

Query: 172 TCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNK 231
           T     F A+       A   ++VY I   +++  +            +    I+++GNK
Sbjct: 60  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN-LTNPNTVIILIGNK 118

Query: 232 SDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG--FV 289
           +D                                   +     T E   Q   ENG  F+
Sbjct: 119 AD----------------------------------LEAQRDVTYEEAKQFAEENGLLFL 144

Query: 290 EASAKDNTNITQVFKELL 307
           EASAK   N+   F E  
Sbjct: 145 EASAKTGENVEDAFLEAA 162

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 48/246 (19%), Positives = 81/246 (32%), Gaps = 87/246 (35%)

Query: 62  RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ 121
           ++++VV+GG  VGKS++  +F+ + F   Y         ED                   
Sbjct: 5   KYRLVVVGGGGVGKSALTIQFIQSYFVTDYD-----PTIEDSYTKQCV------------ 47

Query: 122 SGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAM 181
                         +   LD +                            T    EF AM
Sbjct: 48  -----------IDDRAARLDILD---------------------------TAGQEEFGAM 69

Query: 182 RALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQV 241
           R   + + + F+LV+++ D  SFEEI   +  I   K     P++++GNK+DL  + +  
Sbjct: 70  REQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQV- 128

Query: 242 DLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ 301
                                                 +    +  ++EASAK   N+ Q
Sbjct: 129 -------------------------------TQEEGQQLARQLKVTYMEASAKIRMNVDQ 157

Query: 302 VFKELL 307
            F EL+
Sbjct: 158 AFHELV 163

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 3e-08
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
           +V V G   VGKSS++ RF+  TF   Y  T+E+ + +  S +     L I DT+G
Sbjct: 4   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTG 59

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 46/161 (28%), Positives = 65/161 (40%), Gaps = 48/161 (29%)

Query: 171 MTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST-AVPIVVVG 229
            T  +++FPAM+ LSIS   AFILVY+I    S EE++ I + I E K    ++PI++VG
Sbjct: 56  DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVG 115

Query: 230 NKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG-- 287
           NK D                                          +     +       
Sbjct: 116 NKCD----------------------------------ESPSREVQSSEAEALARTWKCA 141

Query: 288 FVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSL 328
           F+E SAK N N+ ++F+ELL   K           RR  SL
Sbjct: 142 FMETSAKLNHNVKELFQELLNLEK-----------RRTVSL 171

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 11/46 (23%)

Query: 350 DWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSL 395
            W+  F+E SAK N N+ ++F+ELL   K           RR  SL
Sbjct: 137 TWKCAFMETSAKLNHNVKELFQELLNLEK-----------RRTVSL 171

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 4e-08
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYK-RTIEEMHHEDFSMNGVHLKLDILDTSGEQ 121
           KVV++G   VGK+S++ R+  N F+ K+          +  ++ G  + L I DT+G++
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 5e-04
 Identities = 19/139 (13%), Positives = 40/139 (28%), Gaps = 33/139 (23%)

Query: 169 LAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVV 228
           +  T     F A+  +    ++  ILVY I D +SF++++     + +   +     +  
Sbjct: 56  IWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCI-- 113

Query: 229 GNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGF 288
                                            ++I    ++                  
Sbjct: 114 -------------------------------VGNKIDLEKERHVSIQEAESYAESVGAKH 142

Query: 289 VEASAKDNTNITQVFKELL 307
              SAK N  I ++F +L 
Sbjct: 143 YHTSAKQNKGIEELFLDLC 161

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.2 bits (121), Expect = 4e-08
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHED--FSMNGVHLKLDILDTSGEQ 121
           KV+++G   VGK+S++HR++ + +S +YK TI                  + + DT+G++
Sbjct: 4   KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 63

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 6e-08
 Identities = 19/56 (33%), Positives = 31/56 (55%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSG 119
           K+ ++G   VGKSS+  +F+   F   Y  TIE    +  ++NG    L ++DT+G
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAG 61

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 6e-04
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 283 DWENGFVEASAKDNTNITQVFKELLVQAK 311
            W   F+E+SAK+N     VF+ ++++A+
Sbjct: 138 SWNAAFLESSAKENQTAVDVFRRIILEAE 166

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 6e-04
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 350 DWENGFVEASAKDNTNITQVFKELLVQAK 378
            W   F+E+SAK+N     VF+ ++++A+
Sbjct: 138 SWNAAFLESSAKENQTAVDVFRRIILEAE 166

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (116), Expect = 1e-07
 Identities = 34/246 (13%), Positives = 60/246 (24%), Gaps = 88/246 (35%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSG 123
           K++V+G   VGK+ + +RF    F  + + T                             
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPDRTEAT----------------------------- 34

Query: 124 KGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA 183
                G            +                      K+             +M  
Sbjct: 35  ----IGVDFRERAVDIDGERI--------------------KIQLWDTAGQERFRKSMVQ 70

Query: 184 LSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDL 243
               +  A + VY + +  SF  +    +   +   +  +P ++VGNK DL    +    
Sbjct: 71  HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTD 130

Query: 244 TGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK---DNTNIT 300
               F                                         E SAK   DN ++ 
Sbjct: 131 LAQKFAD--------------------------------THSMPLFETSAKNPNDNDHVE 158

Query: 301 QVFKEL 306
            +F  L
Sbjct: 159 AIFMTL 164

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ 121
           K+VV+G   VGKS++  +F    F P Y  TIE+ + +   ++     LD+LDT+G++
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQE 63

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVH 109
           K+V++G   VGKSSI+ RF+ N F+   + TI             H
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEH 50

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 30/143 (20%)

Query: 171 MTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGN 230
            T     F ++  +   +A A ++VY +  P SF + R     + E  +   + I +VGN
Sbjct: 58  DTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD-IIIALVGN 116

Query: 231 KSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVE 290
           K D+  E  +  +     +                                 +    F E
Sbjct: 117 KIDMLQEGGERKVAREEGEKLAE-----------------------------EKGLLFFE 147

Query: 291 ASAKDNTNITQVFKELLVQAKVK 313
            SAK   N+  VF  +  +  +K
Sbjct: 148 TSAKTGENVNDVFLGIGEKIPLK 170

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 2e-07
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVH 109
           K VV+G   VGK+ ++  +  + F  +Y  T+ + +    ++ G  
Sbjct: 11  KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQ 56

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 24/148 (16%), Positives = 57/148 (38%), Gaps = 25/148 (16%)

Query: 171 MTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGN 230
            T    ++  +R LS    D F++ +++ +P SF+ ++       + + +  VP +++G 
Sbjct: 63  DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPFLLIGT 121

Query: 231 KSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVE 290
           + DL D+ + +       +                     +  +  + + +      +VE
Sbjct: 122 QIDLRDDPKTLARLNDMKEKP-------------------ICVEQGQKLAKEIGACCYVE 162

Query: 291 ASAKDNTNITQVFKELLVQAKVKYNLSP 318
            SA     +  VF E ++       L+P
Sbjct: 163 CSALTQKGLKTVFDEAIIAI-----LTP 185

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 320 LRRRRRQSLPPVQHSPNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKV 379
           LR   +           P+  +  + + +      +VE SA     +  VF E ++    
Sbjct: 125 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI-- 182

Query: 380 KYNLSP 385
              L+P
Sbjct: 183 ---LTP 185

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHE-DFSMNGVHLKLDILDTSGEQS 122
           K+VV+G   VGKSS+I R+    F+  YK+TI     E    +N   ++L + DT+G++ 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 123 GKGLKC 128
              +  
Sbjct: 64  FDAITK 69

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI-EEMHHEDFSMNGVHLKLDILDTSGEQS 122
           KV ++G   VGKSSI+ RF+ ++F P    TI      +         K  I DT+G + 
Sbjct: 6   KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 65

Query: 123 GKGL 126
            + L
Sbjct: 66  FRAL 69

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 4e-07
 Identities = 14/58 (24%), Positives = 23/58 (39%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQ 121
           K+V++G   VGKSS++ RF+   F    + TI                   +  +  Q
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 6e-07
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHE 101
           ++ V+G  + GKSS+IHRFL  ++    K   E+   E
Sbjct: 7   RLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKE 44

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 9/70 (12%)

Query: 259 VCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSP 318
                 + +P  V      ++        + E  A    N+ +VF+E+  +         
Sbjct: 114 TQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQK--------- 164

Query: 319 ALRRRRRQSL 328
            +  R++Q L
Sbjct: 165 VVTLRKQQQL 174

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 9/56 (16%)

Query: 340 YDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNLSPALRRRRRQSL 395
                ++        + E  A    N+ +VF+E+  +          +  R++Q L
Sbjct: 128 DARARALCADMKRCSYYETCATYGLNVDRVFQEVAQK---------VVTLRKQQQL 174

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 8e-07
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 60  DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDI 114
           +T ++VV++G   VGKS++ + F     S     +   E+ +     ++G    + +
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL 57

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 7/33 (21%), Positives = 20/33 (60%)

Query: 283 DWENGFVEASAKDNTNITQVFKELLVQAKVKYN 315
            ++  F+E SA    N+ ++F+ ++ Q +++ +
Sbjct: 140 VFDCKFIETSAAVQHNVKELFEGIVRQVRLRRD 172

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 7/33 (21%), Positives = 20/33 (60%)

Query: 350 DWENGFVEASAKDNTNITQVFKELLVQAKVKYN 382
            ++  F+E SA    N+ ++F+ ++ Q +++ +
Sbjct: 140 VFDCKFIETSAAVQHNVKELFEGIVRQVRLRRD 172

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVH 109
           K+V++G    GK++ + R L   F  KY  T+    H         
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 50

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 9/65 (13%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSG 123
           +++++G    GK++I+++            TI  +     ++   ++   + D  G+   
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNISFTVWDVGGQDKI 57

Query: 124 KGLKC 128
           + L  
Sbjct: 58  RPLWR 62

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 6/43 (13%), Positives = 17/43 (39%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMN 106
           ++ ++G    GK++ ++      F+     T+     +    N
Sbjct: 4   ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN 46

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 4e-06
 Identities = 10/46 (21%), Positives = 17/46 (36%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVH 109
           KV+++G P VGKS++   F      P+ +                 
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEA 48

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 7/33 (21%), Positives = 20/33 (60%)

Query: 283 DWENGFVEASAKDNTNITQVFKELLVQAKVKYN 315
            ++  F+E SA  + N+  +F+ ++ Q +++ +
Sbjct: 134 VFDCKFIETSAALHHNVQALFEGVVRQIRLRRD 166

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 7/33 (21%), Positives = 20/33 (60%)

Query: 350 DWENGFVEASAKDNTNITQVFKELLVQAKVKYN 382
            ++  F+E SA  + N+  +F+ ++ Q +++ +
Sbjct: 134 VFDCKFIETSAALHHNVQALFEGVVRQIRLRRD 166

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 4e-05
 Identities = 10/65 (15%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSG 123
           +++++G    GK++I+++            TI  +     ++   ++K ++ D  G+   
Sbjct: 14  RILMLGLDAAGKTTILYKLKLGQSVT----TIPTVGFNVETVTYKNVKFNVWDVGGQDKI 69

Query: 124 KGLKC 128
           + L  
Sbjct: 70  RPLWR 74

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 9e-05
 Identities = 5/37 (13%), Positives = 15/37 (40%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHH 100
           +++++G    GK++I++R                +  
Sbjct: 7   RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVET 43

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 18/127 (14%), Positives = 32/127 (25%), Gaps = 29/127 (22%)

Query: 181 MRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQ 240
                  + D  I V    D   FEE       + E +  + VP+++  NK DL      
Sbjct: 76  YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 135

Query: 241 VDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT 300
            ++  G                               ++    W+      SA     + 
Sbjct: 136 SEIAEG---------------------------LNLHTIRDRVWQ--IQSCSALTGEGVQ 166

Query: 301 QVFKELL 307
                + 
Sbjct: 167 DGMNWVC 173

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 6/50 (12%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLD 113
           +++++G    GK++++ +      S          + +     G  L + 
Sbjct: 18  RILLLGLDNAGKTTLLKQLASEDISHITPTQ--GFNIKSVQSQGFKLNVW 65

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFS---PKYKRTIEEMHHEDFSMNGVH 109
           K++ +G    GK++++H    +  +   P +  T EE+   +       
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFD 50

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 63  HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDI 114
           H+++++G  + GKS+I+ +            T   +    F ++ V+  +  
Sbjct: 7   HRLLLLGAGESGKSTIVKQMRILHVVL----TS-GIFETKFQVDKVNFHMFD 53

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 62  RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTS 118
            HKV+++G    GK++I+++F  N            +      +   + +  + D  
Sbjct: 15  EHKVIIVGLDNAGKTTILYQFSMNEVVHTS----PTIGSNVEEIVINNTRFLMWDIG 67

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (89), Expect = 7e-04
 Identities = 6/28 (21%), Positives = 11/28 (39%)

Query: 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKY 91
           V+ +G    GK+ +  R L   +    
Sbjct: 2  AVLFVGLCDSGKTLLFVRLLTGQYRDTQ 29

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 38.1 bits (87), Expect = 8e-04
 Identities = 6/37 (16%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHH 100
           +++++G    GK++I+ +F           T+     
Sbjct: 4   RLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNIK 39

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 10/61 (16%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 58  GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDT 117
           G +   +++++G    GK++I++R                +     +++  +LKL++ D 
Sbjct: 13  GSNKELRILILGLDGAGKTTILYRLQIGEVVTTK----PTIGFNVETLSYKNLKLNVWDL 68

Query: 118 S 118
            
Sbjct: 69  G 69

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 6/42 (14%), Positives = 16/42 (38%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSM 105
           K++++G  + GKS+I+ +      +            +    
Sbjct: 4   KLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFK 45

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 10/87 (11%), Positives = 24/87 (27%)

Query: 65  VVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGK 124
           +++ G    GK+S++     ++  P           +        +          +   
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSD 65

Query: 125 GLKCGAVLWGPKKWGLDKVCLRRALNQ 151
            LK  A       + +D     + L  
Sbjct: 66  YLKTRAKFVKGLIFMVDSTVDPKKLTT 92

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 2/32 (6%)

Query: 64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTI 95
          K++++G  + GKS+ I +      S     T 
Sbjct: 4  KLLLLGTGESGKSTFIKQMRIIHGS--GVPTT 33

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 31/251 (12%), Positives = 61/251 (24%), Gaps = 18/251 (7%)

Query: 65  VVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGK 124
           VV +G    GK+++   F            +    + D  +  +  +  I         +
Sbjct: 3   VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV----NLDTGVKELPYEPSIDVREFVTVEE 58

Query: 125 GLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRA- 183
            ++            + +   R          K           L  T    E       
Sbjct: 59  IMRE----GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEF 114

Query: 184 -LSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS---TAVPIVVVGNKSDLADENR 239
            + +     + LV  I DP   ++        F             +   NK DL  E  
Sbjct: 115 GVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEE 174

Query: 240 QVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI 299
           +       +   +  L   +           + Y     + +V      +  SAK     
Sbjct: 175 KERHR--KYFEDIDYLTARL--KLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGF 230

Query: 300 TQVFKELLVQA 310
             +   L  + 
Sbjct: 231 EDLE-TLAYEH 240

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 6/37 (16%), Positives = 13/37 (35%)

Query: 64  KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHH 100
           K+V +G    GK++++H    +               
Sbjct: 15  KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	592
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.97
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.97
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.97
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.97
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.97
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.97
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.96
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.96
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.96
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.96
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.95
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.95
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.95
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.92
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.92
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.91
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.9
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.9
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.85
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.85
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.84
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.84
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.84
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.82
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.82
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.8
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.79
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.79
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.78
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.77
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.77
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.73
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.72
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.7
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.69
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.67
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.66
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.61
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.59
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.59
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.54
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.5
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.47
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.43
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.35
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.3
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.17
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.12
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.12
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.07
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.04
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.97
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.94
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.9
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.86
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.74
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.68
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.62
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.59
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.51
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.46
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.4
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.79
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.33
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.31
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.2
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.13
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.07
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.47
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.46
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.09
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	95.77
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.61
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	95.53
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.03
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.99
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	94.99
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	94.75
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	94.67
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	94.46
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	94.43
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	94.42
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	94.42
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	94.36
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	94.35
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.33
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	94.27
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	94.15
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	94.14
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	94.07
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	94.05
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	93.93
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	93.83
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	93.75
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	93.7
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	93.51
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	93.31
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	93.31
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	93.31
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	93.28
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	93.23
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	93.21
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	93.13
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	93.12
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	93.12
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.07
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	92.86
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	92.75
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	92.56
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	92.54
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	92.54
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	92.47
d1g2912	240	Maltose transport protein MalK, N-terminal domain	92.44
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	92.41
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	92.33
d2awna2	232	Maltose transport protein MalK, N-terminal domain	92.31
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	92.28
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	92.24
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	92.12
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.06
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	92.04
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	92.01
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	91.98
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	91.94
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	91.91
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	91.83
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	91.71
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	91.66
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	91.39
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	91.35
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	91.34
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	91.3
d1vmaa2	213	GTPase domain of the signal recognition particle r	91.27
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	91.13
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	91.1
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	90.98
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	90.93
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	90.86
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	90.73
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	90.59
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	90.56
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	90.44
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	90.28
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	89.99
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	89.7
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	89.69
d1j8yf2	211	GTPase domain of the signal sequence recognition p	89.54
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	89.46
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	89.19
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	89.16
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	88.87
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	88.61
d1ls1a2	207	GTPase domain of the signal sequence recognition p	88.49
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	88.48
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	88.35
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	88.2
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	88.02
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	87.78
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	87.56
d2qy9a2	211	GTPase domain of the signal recognition particle r	87.5
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	87.02
d1okkd2	207	GTPase domain of the signal recognition particle r	87.01
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	86.7
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	86.69
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	86.24
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	86.02
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	85.78
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	85.55
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	85.34
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	85.21
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	85.13
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	85.04
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	85.01
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	84.93
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	84.75
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	84.71
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	84.6
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	84.22
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	84.21
d3ctaa1	85	Ta1064 (RFK), N-terminal domain {Thermoplasma acid	84.13
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	83.75
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	83.49
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	83.47
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	83.3
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	83.12
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	83.04
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	82.92
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	82.79
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	82.75
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	82.63
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	82.54
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	82.48
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	82.39
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	82.06
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	81.18
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	81.17
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	81.07
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	81.01
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	80.89
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	80.85
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	80.72
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	80.6
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	80.43
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	80.26

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.5e-31  Score=251.75  Aligned_cols=168  Identities=36%  Similarity=0.582  Sum_probs=154.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||++||+.+.|.+.+.+|..+...+.+.+++..+.+.+|||+|.                   
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~-------------------   64 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQ-------------------   64 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCT-------------------
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccc-------------------
Confidence            5679999999999999999999999999999999998988899999999999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +++..++..+++++|++|+|||++++.||+.+..|+..+.+...
T Consensus        65 ------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~  108 (173)
T d2fn4a1          65 ------------------------------------EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD  108 (173)
T ss_dssp             ------------------------------------TTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT
T ss_pred             ------------------------------------cccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhc
Confidence                                                77888889999999999999999999999999999999887766


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..+.|+||||||+|+...                               +.++.+++..+++ ..+++|+||||++|.||
T Consensus       109 ~~~~p~ilvgnK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~e~Sak~g~gv  156 (173)
T d2fn4a1         109 RDDFPVVLVGNKADLESQ-------------------------------RQVPRSEASAFGA-SHHVAYFEASAKLRLNV  156 (173)
T ss_dssp             SSCCCEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECBTTTTBSH
T ss_pred             cCCCceEEEEEeechhhc-------------------------------cccchhhhhHHHH-hcCCEEEEEeCCCCcCH
Confidence            778999999999999876                               6788889999987 56788999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q psy1524         300 TQVFKELLVQAKVKY  314 (592)
Q Consensus       300 eeLf~~Li~~i~~~~  314 (592)
                      +++|+.+++.+.+..
T Consensus       157 ~e~f~~l~~~i~k~~  171 (173)
T d2fn4a1         157 DEAFEQLVRAVRKYQ  171 (173)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999986543

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.97  E-value=1.5e-31  Score=250.80  Aligned_cols=164  Identities=32%  Similarity=0.626  Sum_probs=150.0

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      +.+||+|+|++|||||||+++|+.+.|.+.+.+|+++.+.+.+.+++..+.+.+||++|+                    
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~--------------------   62 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ--------------------   62 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---------------------
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccc--------------------
Confidence            568999999999999999999999999999999999888888899999999999999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         +++..++..+++++|++|+|||++|+.||+.+..|+..+.+....
T Consensus        63 -----------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~  107 (168)
T d1u8za_          63 -----------------------------------EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED  107 (168)
T ss_dssp             -------------------------------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             -----------------------------------cchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCC
Confidence                                               778889999999999999999999999999999999999887667


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      .++|+++||||+|+.+.                               ++++.++++.+++ ..+++|+||||++|.||+
T Consensus       108 ~~~piiivgnK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~e~Sak~g~gv~  155 (168)
T d1u8za_         108 ENVPFLLVGNKSDLEDK-------------------------------RQVSVEEAKNRAD-QWNVNYVETSAKTRANVD  155 (168)
T ss_dssp             TTSCEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEECCTTTCTTHH
T ss_pred             CCCcEEEEecccccccc-------------------------------ccccHHHHHHHHH-HcCCeEEEEcCCCCcCHH
Confidence            88999999999999766                               7889999999988 557889999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         301 QVFKELLVQAK  311 (592)
Q Consensus       301 eLf~~Li~~i~  311 (592)
                      ++|+.|++++.
T Consensus       156 e~f~~l~~~i~  166 (168)
T d1u8za_         156 KVFFDLMREIR  166 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999884

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.4e-31  Score=248.34  Aligned_cols=165  Identities=33%  Similarity=0.571  Sum_probs=152.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ++.+||+|||++|||||||++||+.+.|.+.+.+|+++.+...+.+++..+.+.+||++|+                   
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~-------------------   61 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT-------------------   61 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSS-------------------
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCc-------------------
Confidence            4679999999999999999999999999999999999888888889999999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +.+..++..+++++|++|+|||++++.||+++..|+..+.+...
T Consensus        62 ------------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~  105 (167)
T d1c1ya_          62 ------------------------------------EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD  105 (167)
T ss_dssp             ------------------------------------CSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC
T ss_pred             ------------------------------------ccccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcC
Confidence                                                77888999999999999999999999999999999999988766


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..++|+||||||+|+...                               +.++.+++..+++...+++|+||||++|+||
T Consensus       106 ~~~~p~ilvgnK~Dl~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv  154 (167)
T d1c1ya_         106 TEDVPMILVGNKCDLEDE-------------------------------RVVGKEQGQNLARQWCNCAFLESSAKSKINV  154 (167)
T ss_dssp             CSCCCEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHHHTTSCEEEECBTTTTBSH
T ss_pred             CCCCeEEEEEEecCcccc-------------------------------cccchhHHHHHHHHhCCCEEEEEcCCCCcCH
Confidence            778999999999999876                               6778888899888667889999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         300 TQVFKELLVQA  310 (592)
Q Consensus       300 eeLf~~Li~~i  310 (592)
                      +++|+.|++++
T Consensus       155 ~e~F~~l~~~i  165 (167)
T d1c1ya_         155 NEIFYDLVRQI  165 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999887

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.6e-31  Score=249.37  Aligned_cols=166  Identities=31%  Similarity=0.541  Sum_probs=152.8

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      .+++||+++|++|||||||+++|+++.|.+.+.+|+.+.+.+.+.+++..+.+++||++|.                   
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~-------------------   62 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQ-------------------   62 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSC-------------------
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccc-------------------
Confidence            3579999999999999999999999999999999999888888899999999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +.+..++..+++++|++++|||++|+.||+++..|+..+.+...
T Consensus        63 ------------------------------------~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~  106 (169)
T d1x1ra1          63 ------------------------------------EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD  106 (169)
T ss_dssp             ------------------------------------GGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT
T ss_pred             ------------------------------------cccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhcc
Confidence                                                78888889999999999999999999999999999999988766


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc-c
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT-N  298 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~-g  298 (592)
                      ..++|+|+||||+|+...                               +.++.+++..+++ ..+++|+|||||++. |
T Consensus       107 ~~~~p~ilvgnK~Dl~~~-------------------------------~~v~~e~~~~~~~-~~~~~~~e~Sak~~~~n  154 (169)
T d1x1ra1         107 RESFPMILVANKVDLMHL-------------------------------RKVTRDQGKEMAT-KYNIPYIETSAKDPPLN  154 (169)
T ss_dssp             SSCCCEEEEEECTTCSTT-------------------------------CCSCHHHHHHHHH-HHTCCEEEEBCSSSCBS
T ss_pred             ccCccEEEEecccchhhh-------------------------------ceeehhhHHHHHH-HcCCEEEEEcCCCCCcC
Confidence            678999999999999876                               7889999999998 556789999999885 9


Q ss_pred             HHHHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQAKV  312 (592)
Q Consensus       299 VeeLf~~Li~~i~~  312 (592)
                      |+++|..|++.+.+
T Consensus       155 V~~~F~~l~~~i~~  168 (169)
T d1x1ra1         155 VDKTFHDLVRVIRQ  168 (169)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999865

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-31  Score=249.95  Aligned_cols=165  Identities=30%  Similarity=0.598  Sum_probs=150.2

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      .+.+||+|+|++|||||||+++|+++.|.+.+.+|+...+.+.+.+++..+.+.+|||+|.                   
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~-------------------   62 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ-------------------   62 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCC-------------------
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccc-------------------
Confidence            3468999999999999999999999999999999999878888999999999999999998                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +.+..++..++..+|++|+|||+++++||+.+..|+..+.+...
T Consensus        63 ------------------------------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~  106 (167)
T d1xtqa1          63 ------------------------------------DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG  106 (167)
T ss_dssp             ------------------------------------CTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHC
T ss_pred             ------------------------------------cccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhccc
Confidence                                                55666667789999999999999999999999999999988766


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..++|++|||||+|+...                               +.++.++++.+++ .++++|+||||++|.||
T Consensus       107 ~~~~piilvgnK~Dl~~~-------------------------------r~v~~~~~~~~a~-~~~~~~~e~Sak~~~~v  154 (167)
T d1xtqa1         107 KVQIPIMLVGNKKDLHME-------------------------------RVISYEEGKALAE-SWNAAFLESSAKENQTA  154 (167)
T ss_dssp             SSCCCEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEECCTTCHHHH
T ss_pred             ccccceeeeccccccccc-------------------------------cchhHHHHHHHHH-HcCCEEEEEecCCCCCH
Confidence            778999999999999776                               7889999999988 66788999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1524         300 TQVFKELLVQAK  311 (592)
Q Consensus       300 eeLf~~Li~~i~  311 (592)
                      +++|+.+++++.
T Consensus       155 ~~~f~~li~~~~  166 (167)
T d1xtqa1         155 VDVFRRIILEAE  166 (167)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999999874

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.1e-31  Score=247.34  Aligned_cols=165  Identities=36%  Similarity=0.632  Sum_probs=151.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ++.+||+|+|++|||||||++||+++.|.+.+.+|+++.+.....+++..+.+++||++|+                   
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~-------------------   61 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT-------------------   61 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCT-------------------
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCc-------------------
Confidence            3579999999999999999999999999999999999999999999999999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +.+..++..++++||++++|||++++.||.++..|+..+.....
T Consensus        62 ------------------------------------~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~  105 (167)
T d1kaoa_          62 ------------------------------------EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR  105 (167)
T ss_dssp             ------------------------------------TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT
T ss_pred             ------------------------------------cccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhcc
Confidence                                                77888999999999999999999999999999999999887656


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..++|++|||||+|+...                               +.+..+++..+++ ..+++|+||||++|.||
T Consensus       106 ~~~~piilvgnK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~e~Sak~g~~i  153 (167)
T d1kaoa_         106 YEKVPVILVGNKVDLESE-------------------------------REVSSSEGRALAE-EWGCPFMETSAKSKTMV  153 (167)
T ss_dssp             TSCCCEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HHTSCEEEECTTCHHHH
T ss_pred             CCCCCEEEEEEccchhhc-------------------------------ccchHHHHHHHHH-HcCCeEEEECCCCCcCH
Confidence            678999999999999876                               6778888988887 55678999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1524         300 TQVFKELLVQAK  311 (592)
Q Consensus       300 eeLf~~Li~~i~  311 (592)
                      +++|+.+++++.
T Consensus       154 ~e~f~~i~~~i~  165 (167)
T d1kaoa_         154 DELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            999999998873

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.7e-31  Score=247.78  Aligned_cols=163  Identities=25%  Similarity=0.395  Sum_probs=134.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      +||+|+|++|||||||+++|.+..+. .+.+++.+.+.+.+.+++..+.+.+|||+|+                      
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~----------------------   58 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ----------------------   58 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC------------------------
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccC-CcCCeeeeeecceeeccccccceeeeecccc----------------------
Confidence            79999999999999999999987764 3456667778888899999999999999999                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA  222 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~  222 (592)
                                                       +++..++..+++++|++|+|||++++.||+++..|+..+.......+
T Consensus        59 ---------------------------------e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~  105 (168)
T d2gjsa1          59 ---------------------------------DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD  105 (168)
T ss_dssp             --------------------------------------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--C
T ss_pred             ---------------------------------cccceecccchhhhhhhceeccccccccccccccccchhhccccccc
Confidence                                             88889999999999999999999999999999999999988766678


Q ss_pred             CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHH
Q psy1524         223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV  302 (592)
Q Consensus       223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeL  302 (592)
                      +|+++||||+|+.+.                               ++++.++++.+++ .++++|+||||++|.||+++
T Consensus       106 ~piilvgnK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~e~Sak~~~~v~~~  153 (168)
T d2gjsa1         106 VPIILVGNKSDLVRS-------------------------------REVSVDEGRACAV-VFDCKFIETSAALHHNVQAL  153 (168)
T ss_dssp             CCEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTSEEEECBTTTTBSHHHH
T ss_pred             ceEEEeecccchhhh-------------------------------cchhHHHHHHHHH-hcCCEEEEEeCCCCcCHHHH
Confidence            999999999999876                               7788999999987 56789999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy1524         303 FKELLVQAKVK  313 (592)
Q Consensus       303 f~~Li~~i~~~  313 (592)
                      |+.|++.+..+
T Consensus       154 f~~l~~~i~~~  164 (168)
T d2gjsa1         154 FEGVVRQIRLR  164 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-30  Score=244.36  Aligned_cols=165  Identities=33%  Similarity=0.579  Sum_probs=149.1

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ..+||+|+|++|||||||++||+.+.|.+.+.+|.++.+...+.+++..+.+.+||++|.                    
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~--------------------   63 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQ--------------------   63 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----------------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeeccccccccccccccc--------------------
Confidence            458999999999999999999999999999999999999999999999999999999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         +++..++..+++.||++++|||++++.||+.+..|+..+.+....
T Consensus        64 -----------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~  108 (171)
T d2erya1          64 -----------------------------------EEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDR  108 (171)
T ss_dssp             -------------------------------------CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS
T ss_pred             -----------------------------------ccccccccccccccceEEEeeccccccchhhHHHHhHHHHhhccc
Confidence                                               778888899999999999999999999999999999988877667


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      ...|+||||||+|+...                               +.++.+++..+++ ..+++|+||||++|.||+
T Consensus       109 ~~~p~ilvgnK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~e~Sak~~~~i~  156 (171)
T d2erya1         109 DEFPMILIGNKADLDHQ-------------------------------RQVTQEEGQQLAR-QLKVTYMEASAKIRMNVD  156 (171)
T ss_dssp             SCCSEEEEEECTTCTTS-------------------------------CSSCHHHHHHHHH-HTTCEEEECBTTTTBSHH
T ss_pred             CCCCEEEEEeccchhhh-------------------------------ccchHHHHHHHHH-HcCCEEEEEcCCCCcCHH
Confidence            78999999999999766                               7788999999987 567889999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1524         301 QVFKELLVQAKV  312 (592)
Q Consensus       301 eLf~~Li~~i~~  312 (592)
                      ++|..|++.+.+
T Consensus       157 e~f~~l~~~i~k  168 (171)
T d2erya1         157 QAFHELVRVIRK  168 (171)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999854

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.5e-31  Score=247.69  Aligned_cols=162  Identities=40%  Similarity=0.625  Sum_probs=147.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      .+||+|+|++|||||||++||+.+.|.+.+.+|+++.+.....+++..+.+.+||++|+                     
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~---------------------   60 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS---------------------   60 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSC---------------------
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceecccccccc---------------------
Confidence            58999999999999999999999999999999999888888899999999999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh-cC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK-AS  220 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~-~~  220 (592)
                                                        +.|..+...+++.+|++|+|||+++++||+++..|+..+.+.. ..
T Consensus        61 ----------------------------------~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~  106 (171)
T d2erxa1          61 ----------------------------------HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDV  106 (171)
T ss_dssp             ----------------------------------SSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC--
T ss_pred             ----------------------------------ccccccccccccceeEEEEEeecccccchhcccchhhhhhhhhccC
Confidence                                              8888999999999999999999999999999999999887754 34


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      .++|+||||||+|+...                               +.++.++++++++ ..+++|+||||++|.||+
T Consensus       107 ~~~piilVgnK~Dl~~~-------------------------------~~v~~~e~~~~~~-~~~~~~~e~Sak~~~~v~  154 (171)
T d2erxa1         107 ESIPIMLVGNKCDESPS-------------------------------REVQSSEAEALAR-TWKCAFMETSAKLNHNVK  154 (171)
T ss_dssp             -CCCEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEECBTTTTBSHH
T ss_pred             CCCcEEEEeeccccccc-------------------------------ccccHHHHHHHHH-HcCCeEEEEcCCCCcCHH
Confidence            67899999999999776                               7889999999987 567889999999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         301 QVFKELLVQA  310 (592)
Q Consensus       301 eLf~~Li~~i  310 (592)
                      ++|+.|++.+
T Consensus       155 e~f~~l~~~~  164 (171)
T d2erxa1         155 ELFQELLNLE  164 (171)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHHH
Confidence            9999999865

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.7e-31  Score=251.11  Aligned_cols=179  Identities=21%  Similarity=0.378  Sum_probs=153.6

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      +....+||+|+|++|||||||++||+.+.|.+.+.+|+.+...+.+.+++..+.+.+|||+|+                 
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~-----------------   67 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ-----------------   67 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCS-----------------
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeeccccccc-----------------
Confidence            346789999999999999999999999999999999999888888899999999999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            +.|..++..+++++|++|+|||+++++||+++..|+..+.+.
T Consensus        68 --------------------------------------e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~  109 (185)
T d2atxa1          68 --------------------------------------EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE  109 (185)
T ss_dssp             --------------------------------------SSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             --------------------------------------chhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHh
Confidence                                                  778888888999999999999999999999988776666655


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                       ...++|+|+||||+|+.++....                   ........+.++.+++.++++..+.+.|+||||++|.
T Consensus       110 -~~~~~~~ilvgnK~Dl~~~~~~~-------------------~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~  169 (185)
T d2atxa1         110 -YAPNVPFLLIGTQIDLRDDPKTL-------------------ARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQK  169 (185)
T ss_dssp             -HSTTCCEEEEEECTTSTTCHHHH-------------------HHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCT
T ss_pred             -cCCCCCeeEeeeccccccchhhh-------------------hhhhhcccccccHHHHHHHHHHcCCCEEEEecCCCCc
Confidence             35689999999999998652110                   0001122378999999999987777899999999999


Q ss_pred             cHHHHHHHHHHHHH
Q psy1524         298 NITQVFKELLVQAK  311 (592)
Q Consensus       298 gVeeLf~~Li~~i~  311 (592)
                      ||+++|+.++++++
T Consensus       170 gv~e~F~~li~~il  183 (185)
T d2atxa1         170 GLKTVFDEAIIAIL  183 (185)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHc
Confidence            99999999999874

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-30  Score=244.32  Aligned_cols=164  Identities=31%  Similarity=0.503  Sum_probs=146.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      .+||+|+|++|||||||++||+.+.|.+.+.||++..+...+..++..+.+++|||+|.                     
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~---------------------   60 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQ---------------------   60 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---------------------
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccc---------------------
Confidence            48999999999999999999999999999999999877788888999999999999998                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        +.+. .+..+++++|++++|||++++.||..+..|+..+.......
T Consensus        61 ----------------------------------~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~  105 (168)
T d2atva1          61 ----------------------------------EDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPK  105 (168)
T ss_dssp             ----------------------------------CCCH-HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS
T ss_pred             ----------------------------------cccc-cchhhhcccccceeecccCCccchhhhhhhccccccccccc
Confidence                                              4443 45668899999999999999999999999888776665667


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc-cHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT-NIT  300 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~-gVe  300 (592)
                      +.|+++||||+|+...                               +.|+.++++.+++ ..+++|+||||++|. ||+
T Consensus       106 ~~piilvgnK~Dl~~~-------------------------------r~V~~~e~~~~a~-~~~~~~~e~Saktg~gnV~  153 (168)
T d2atva1         106 NVTLILVGNKADLDHS-------------------------------RQVSTEEGEKLAT-ELACAFYECSACTGEGNIT  153 (168)
T ss_dssp             CCCEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HHTSEEEECCTTTCTTCHH
T ss_pred             Ccceeeeccchhhhhh-------------------------------ccCcHHHHHHHHH-HhCCeEEEEccccCCcCHH
Confidence            8999999999999766                               7899999999988 567899999999998 699


Q ss_pred             HHHHHHHHHHHHh
Q psy1524         301 QVFKELLVQAKVK  313 (592)
Q Consensus       301 eLf~~Li~~i~~~  313 (592)
                      ++|..|++.+.++
T Consensus       154 e~F~~l~~~i~~~  166 (168)
T d2atva1         154 EIFYELCREVRRR  166 (168)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-30  Score=242.90  Aligned_cols=167  Identities=31%  Similarity=0.453  Sum_probs=151.3

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .++.+||+|+|++|||||||+++|+++.|.+.+.+++. +.....+.+++..+.+.+|||+|+                 
T Consensus         2 ~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~-----------------   64 (171)
T d2ew1a1           2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ-----------------   64 (171)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS-----------------
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCc-----------------
Confidence            46789999999999999999999999999988888876 778888899999999999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            ++|..++..+++++|++++|||++++.+|+.+..|+..+.+.
T Consensus        65 --------------------------------------e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~  106 (171)
T d2ew1a1          65 --------------------------------------ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY  106 (171)
T ss_dssp             --------------------------------------GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             --------------------------------------hhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhccc
Confidence                                                  889999999999999999999999999999999999988775


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                       ....+|+||||||+|+.+.                               +.++.++++.+++ ..+++|++|||++|+
T Consensus       107 -~~~~~~~ilvgnK~D~~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~~~SAktg~  153 (171)
T d2ew1a1         107 -ASNKVITVLVGNKIDLAER-------------------------------REVSQQRAEEFSE-AQDMYYLETSAKESD  153 (171)
T ss_dssp             -SCTTCEEEEEEECGGGGGG-------------------------------CSSCHHHHHHHHH-HHTCCEEECCTTTCT
T ss_pred             -ccccccEEEEEeecccccc-------------------------------cchhhhHHHHHHH-hCCCEEEEEccCCCC
Confidence             4567899999999998766                               6788889999987 466789999999999


Q ss_pred             cHHHHHHHHHHHHHHh
Q psy1524         298 NITQVFKELLVQAKVK  313 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~  313 (592)
                      ||+++|..|++++...
T Consensus       154 gV~e~f~~l~~~l~~~  169 (171)
T d2ew1a1         154 NVEKLFLDLACRLISE  169 (171)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999888654

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.9e-31  Score=246.74  Aligned_cols=175  Identities=25%  Similarity=0.400  Sum_probs=150.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +.||+|+|++|||||||+++|+.+.|.+.+.+|+++.......+++..+.++|||++|+                     
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~---------------------   60 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGL---------------------   60 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCS---------------------
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCcc---------------------
Confidence            47999999999999999999999999999999999888888899999999999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        +.|..++..+++++|++|+|||++++.||+++..|+..+... ..+
T Consensus        61 ----------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~  105 (177)
T d1kmqa_          61 ----------------------------------EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCP  105 (177)
T ss_dssp             ----------------------------------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HST
T ss_pred             ----------------------------------chhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHH-hCC
Confidence                                              888888899999999999999999999999998877666655 357


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|++|||||+|+.......                   ........+.++.+++..+++......|+||||++|.||++
T Consensus       106 ~~piilvgnK~Dl~~~~~~~-------------------~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e  166 (177)
T d1kmqa_         106 NVPIILVGNKKDLRNDEHTR-------------------RELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE  166 (177)
T ss_dssp             TSCEEEEEECGGGTTCHHHH-------------------HHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHH
T ss_pred             CCceEEeeecccccchhhHH-------------------HHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCCcCHHH
Confidence            89999999999997642110                   00001123678999999999876678899999999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         302 VFKELLVQAK  311 (592)
Q Consensus       302 Lf~~Li~~i~  311 (592)
                      +|+.+++.++
T Consensus       167 ~F~~i~~~~l  176 (177)
T d1kmqa_         167 VFEMATRAAL  176 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.5e-31  Score=244.27  Aligned_cols=164  Identities=28%  Similarity=0.438  Sum_probs=143.4

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      +.+||+|+|++|||||||++||+.+.|.+.+.+|+. +...+.+..++..+.+++||++|+                   
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~-------------------   62 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ-------------------   62 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------------------
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCc-------------------
Confidence            578999999999999999999999999999999998 666778888999999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +++..++..+++++|++|+|||+++++||+++..|+..+... .
T Consensus        63 ------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~-~  105 (167)
T d1z08a1          63 ------------------------------------ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM-L  105 (167)
T ss_dssp             -------------------------------------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-H
T ss_pred             ------------------------------------ceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhcccc-c
Confidence                                                677778888899999999999999999999999999887665 3


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ....|++|||||+|+..+                               +.++.++++.+++ ..+++|+||||++|.||
T Consensus       106 ~~~~~~ilvgnK~Dl~~~-------------------------------~~v~~~e~~~~a~-~~~~~~~e~Sak~~~~v  153 (167)
T d1z08a1         106 GNEICLCIVGNKIDLEKE-------------------------------RHVSIQEAESYAE-SVGAKHYHTSAKQNKGI  153 (167)
T ss_dssp             GGGSEEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEEEBTTTTBSH
T ss_pred             ccccceeeeccccccccc-------------------------------cccchHHHHHHHH-HcCCeEEEEecCCCcCH
Confidence            567899999999999877                               7899999999988 56789999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1524         300 TQVFKELLVQAKV  312 (592)
Q Consensus       300 eeLf~~Li~~i~~  312 (592)
                      +++|+.|++.+.+
T Consensus       154 ~e~F~~l~~~i~~  166 (167)
T d1z08a1         154 EELFLDLCKRMIE  166 (167)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998854

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.5e-30  Score=242.11  Aligned_cols=161  Identities=31%  Similarity=0.504  Sum_probs=146.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      .+||+|+|++|||||||++||+++.|.+.+.+|++ +........++..+.+.+|||+|+                    
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~--------------------   61 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ--------------------   61 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTG--------------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCc--------------------
Confidence            47999999999999999999999999999999998 778888889999999999999998                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         +++..+...+++++|++++|||++++.||+++..|+..+.+..  
T Consensus        62 -----------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--  104 (164)
T d1z2aa1          62 -----------------------------------EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--  104 (164)
T ss_dssp             -----------------------------------GGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--
T ss_pred             -----------------------------------cchhhhhhhhhccCceEEEEEeccchhhhhhcccccccccccC--
Confidence                                               6667777788999999999999999999999999999988753  


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      .++|+||||||+|+.++                               +.++.++++.+++ ..+++|+||||++|.||+
T Consensus       105 ~~~~iilVgnK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~e~Sak~g~~v~  152 (164)
T d1z2aa1         105 GDIPTALVQNKIDLLDD-------------------------------SCIKNEEAEGLAK-RLKLRFYRTSVKEDLNVS  152 (164)
T ss_dssp             CSCCEEEEEECGGGGGG-------------------------------CSSCHHHHHHHHH-HHTCEEEECBTTTTBSSH
T ss_pred             CCceEEEeeccCCcccc-------------------------------eeeeehhhHHHHH-HcCCEEEEeccCCCcCHH
Confidence            57999999999999876                               7888999999987 456789999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         301 QVFKELLVQAK  311 (592)
Q Consensus       301 eLf~~Li~~i~  311 (592)
                      ++|+.|+++++
T Consensus       153 e~f~~l~~~~l  163 (164)
T d1z2aa1         153 EVFKYLAEKHL  163 (164)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999885

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.6e-30  Score=238.79  Aligned_cols=163  Identities=26%  Similarity=0.416  Sum_probs=148.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ++.+||+|+|++|||||||++||+++.|.+.+.+++. +.....+.+++..+.+++|||+|+                  
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~------------------   63 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ------------------   63 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTG------------------
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCc------------------
Confidence            5679999999999999999999999999988888777 677788889999999999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           +.+..++..+++.+|++|+|||+++.+||..+..|+..+.+. 
T Consensus        64 -------------------------------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~-  105 (166)
T d1z0fa1          64 -------------------------------------ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL-  105 (166)
T ss_dssp             -------------------------------------GGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-
T ss_pred             -------------------------------------hhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhh-
Confidence                                                 888999999999999999999999999999999999988775 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      .....|+++||||+|+...                               +.++.+++..+++ ..+++|+||||++|.|
T Consensus       106 ~~~~~~iilvgnK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~e~Saktg~~  153 (166)
T d1z0fa1         106 TNPNTVIILIGNKADLEAQ-------------------------------RDVTYEEAKQFAE-ENGLLFLEASAKTGEN  153 (166)
T ss_dssp             SCTTCEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECCTTTCTT
T ss_pred             ccccceEEEEcccccchhh-------------------------------cccHHHHHHHHHH-HcCCEEEEEeCCCCCC
Confidence            5678899999999999766                               6778889999988 5677999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQA  310 (592)
Q Consensus       299 VeeLf~~Li~~i  310 (592)
                      |+++|+.|++++
T Consensus       154 v~e~f~~i~~~i  165 (166)
T d1z0fa1         154 VEDAFLEAAKKI  165 (166)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999876

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=4.8e-30  Score=240.16  Aligned_cols=166  Identities=28%  Similarity=0.474  Sum_probs=150.3

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .++.+||+|+|++|||||||+++|+++.|.+.+.++++ +.....+..++..+.++||||+|+                 
T Consensus         2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~-----------------   64 (169)
T d3raba_           2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ-----------------   64 (169)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCS-----------------
T ss_pred             CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCc-----------------
Confidence            46789999999999999999999999999988888887 777788888999999999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            ++|..++..++++||++|+|||+++++++..+..|+..+...
T Consensus        65 --------------------------------------e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~  106 (169)
T d3raba_          65 --------------------------------------ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY  106 (169)
T ss_dssp             --------------------------------------GGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             --------------------------------------hhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcc
Confidence                                                  889999999999999999999999999999999999877665


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                       .....|+++|+||+|+...                               +.++.+++..+++ ..+++|++|||++|.
T Consensus       107 -~~~~~~iivv~nK~D~~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~e~Sak~g~  153 (169)
T d3raba_         107 -SWDNAQVLLVGNKCDMEDE-------------------------------RVVSSERGRQLAD-HLGFEFFEASAKDNI  153 (169)
T ss_dssp             -CCSCCEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEECBTTTTB
T ss_pred             -cCCcceEEEEEeecccccc-------------------------------cccchhhhHHHHH-HcCCEEEEecCCCCc
Confidence             5678999999999998876                               6788899998887 556789999999999


Q ss_pred             cHHHHHHHHHHHHHH
Q psy1524         298 NITQVFKELLVQAKV  312 (592)
Q Consensus       298 gVeeLf~~Li~~i~~  312 (592)
                      ||+++|+.|++.+.+
T Consensus       154 gv~e~f~~l~~~i~e  168 (169)
T d3raba_         154 NVKQTFERLVDVICE  168 (169)
T ss_dssp             SHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999998854

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=7e-30  Score=238.34  Aligned_cols=163  Identities=28%  Similarity=0.415  Sum_probs=147.5

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceee-eEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEE-MHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d-~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ++.+||+|+|++|||||||++||+.+.|.+.+.+|+.+ ........++..+.+.+|||+|+                  
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~------------------   63 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL------------------   63 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS------------------
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCc------------------
Confidence            46799999999999999999999999999999999884 55566677888899999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           +++..++..+++.+|++|+|||++++++|+.+..|+..+... 
T Consensus        64 -------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-  105 (167)
T d1z0ja1          64 -------------------------------------ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-  105 (167)
T ss_dssp             -------------------------------------GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-
T ss_pred             -------------------------------------hhhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhc-
Confidence                                                 788889999999999999999999999999999999888776 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      ...+.|++|||||+|+.+.                               +.++.++++.+++ ..++.|+||||++|.|
T Consensus       106 ~~~~~~iilvgnK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~e~SAk~~~n  153 (167)
T d1z0ja1         106 GPPSIVVAIAGNKCDLTDV-------------------------------REVMERDAKDYAD-SIHAIFVETSAKNAIN  153 (167)
T ss_dssp             SCTTSEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECBTTTTBS
T ss_pred             cCCcceEEEecccchhccc-------------------------------cchhHHHHHHHHH-HcCCEEEEEecCCCCC
Confidence            5678999999999999776                               7889999999988 5678999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQA  310 (592)
Q Consensus       299 VeeLf~~Li~~i  310 (592)
                      |+++|..|++++
T Consensus       154 V~e~f~~l~~~i  165 (167)
T d1z0ja1         154 INELFIEISRRI  165 (167)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999999999886

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6e-30  Score=237.59  Aligned_cols=160  Identities=31%  Similarity=0.541  Sum_probs=146.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +||+|+|++|||||||++||+++.|.+.+.++++ +........++..+.+.+||++|+                     
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~---------------------   59 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQ---------------------   59 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCS---------------------
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCc---------------------
Confidence            6999999999999999999999999999999987 566677778899999999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        +.+..++..++..+|++++|||++++.||+++..|+..+... ...
T Consensus        60 ----------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~-~~~  104 (164)
T d1yzqa1          60 ----------------------------------ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE-RGS  104 (164)
T ss_dssp             ----------------------------------GGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-HTT
T ss_pred             ----------------------------------chhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHh-cCC
Confidence                                              888889999999999999999999999999999999998776 457


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|++|||||+|+.+.                               +.++.+++..+++ ..++.|+||||++|.||++
T Consensus       105 ~~~iilvgnK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~e~SAk~g~~v~e  152 (164)
T d1yzqa1         105 DVIIMLVGNKTDLADK-------------------------------RQVSIEEGERKAK-ELNVMFIETSAKAGYNVKQ  152 (164)
T ss_dssp             SSEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECCTTTCTTHHH
T ss_pred             CceEEEEecccchhhh-------------------------------hhhhHHHHHHHHH-HcCCEEEEecCCCCcCHHH
Confidence            8999999999999876                               6778889999987 5678899999999999999


Q ss_pred             HHHHHHHHH
Q psy1524         302 VFKELLVQA  310 (592)
Q Consensus       302 Lf~~Li~~i  310 (592)
                      +|++|++++
T Consensus       153 ~f~~i~~~l  161 (164)
T d1yzqa1         153 LFRRVAAAL  161 (164)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHhh
Confidence            999999876

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-29  Score=236.42  Aligned_cols=163  Identities=34%  Similarity=0.578  Sum_probs=149.5

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      +.+||+|+|++|||||||++||+++.|.+.+.+|+++.+...+..++..+.+.+||++|.                    
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--------------------   61 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--------------------   61 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCC--------------------
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCc--------------------
Confidence            468999999999999999999999999999999999888888888999999999999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         +.+..++..+++.++++++|||++++.||+.+..|+..+.+....
T Consensus        62 -----------------------------------~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~  106 (166)
T d1ctqa_          62 -----------------------------------EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS  106 (166)
T ss_dssp             -----------------------------------GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC
T ss_pred             -----------------------------------cccccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCC
Confidence                                               788889999999999999999999999999999999999988767


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      .++|+|+|+||+|+..                                +.++.++++.+++ ..+++|+||||++|+||+
T Consensus       107 ~~~piilv~nK~Dl~~--------------------------------~~~~~~~~~~~~~-~~~~~~~e~Sak~g~gi~  153 (166)
T d1ctqa_         107 DDVPMVLVGNKCDLAA--------------------------------RTVESRQAQDLAR-SYGIPYIETSAKTRQGVE  153 (166)
T ss_dssp             SSCCEEEEEECTTCSC--------------------------------CCSCHHHHHHHHH-HHTCCEEECCTTTCTTHH
T ss_pred             CCCeEEEEeccccccc--------------------------------ccccHHHHHHHHH-HhCCeEEEEcCCCCcCHH
Confidence            7899999999999864                                4677888999987 456789999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         301 QVFKELLVQAK  311 (592)
Q Consensus       301 eLf~~Li~~i~  311 (592)
                      ++|..+++.+.
T Consensus       154 e~f~~i~~~i~  164 (166)
T d1ctqa_         154 DAFYTLVREIR  164 (166)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999884

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.1e-30  Score=244.90  Aligned_cols=178  Identities=23%  Similarity=0.405  Sum_probs=153.0

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      ..+||+|+|++|||||||++||+.+.|.+.+.+|+++.......+++..+.++||||+|+                    
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~--------------------   61 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ--------------------   61 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCS--------------------
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccc--------------------
Confidence            468999999999999999999999999999999999888888899999999999999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         ++|..++..+++.+|++|+|||+++++||+++..|+..+... ..
T Consensus        62 -----------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~  105 (191)
T d2ngra_          62 -----------------------------------EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HC  105 (191)
T ss_dssp             -----------------------------------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HC
T ss_pred             -----------------------------------hhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhh-cC
Confidence                                               888889999999999999999999999999998876666655 45


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      .+.|+++||||+|+.+......                   .......+.++.++++.+++....+.|+||||++|.||+
T Consensus       106 ~~~~i~lvgnK~Dl~~~~~~~~-------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~  166 (191)
T d2ngra_         106 PKTPFLLVGTQIDLRDDPSTIE-------------------KLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK  166 (191)
T ss_dssp             TTCCEEEEEECGGGGGCHHHHH-------------------HHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHH
T ss_pred             CCCceEEEeccccccccchhhh-------------------hhhhcccccccHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Confidence            7899999999999976521100                   001122367999999999987778899999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy1524         301 QVFKELLVQAKVK  313 (592)
Q Consensus       301 eLf~~Li~~i~~~  313 (592)
                      ++|+.+++.+.+.
T Consensus       167 e~f~~l~~~~~~~  179 (191)
T d2ngra_         167 NVFDEAILAALEP  179 (191)
T ss_dssp             HHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999887443

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5e-30  Score=243.08  Aligned_cols=177  Identities=23%  Similarity=0.389  Sum_probs=150.7

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      +..+||+|+|++|||||||++||+.+.|.+.+.+|+.+.....+.+++..+.+.+||++|+                   
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~-------------------   63 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ-------------------   63 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCS-------------------
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeeccccc-------------------
Confidence            5679999999999999999999999999999999999888888999999999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +.|..++..+++.+|++|+|||+++++||+++..|+..+.+. .
T Consensus        64 ------------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~-~  106 (183)
T d1mh1a_          64 ------------------------------------EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH-H  106 (183)
T ss_dssp             ------------------------------------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-H
T ss_pred             ------------------------------------ccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHH-h
Confidence                                                778888888999999999999999999999998866655554 3


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..++|+||||||+|+.++....+                   .......+.+...++..+++....+.|+||||++|.||
T Consensus       107 ~~~~piilvgnK~Dl~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V  167 (183)
T d1mh1a_         107 CPNTPIILVGTKLDLRDDKDTIE-------------------KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL  167 (183)
T ss_dssp             STTSCEEEEEECHHHHTCHHHHH-------------------HHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred             CCCCcEEEEeecccchhhhhhhh-------------------hhhhccccchhhHHHHHHHHHcCCceEEEcCCCCCcCH
Confidence            56899999999999875421100                   00011235677889999998777789999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy1524         300 TQVFKELLVQAK  311 (592)
Q Consensus       300 eeLf~~Li~~i~  311 (592)
                      +++|+.+++.++
T Consensus       168 ~e~F~~l~~~il  179 (183)
T d1mh1a_         168 KTVFDEAIRAVL  179 (183)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHc
Confidence            999999999883

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.8e-29  Score=235.78  Aligned_cols=166  Identities=27%  Similarity=0.405  Sum_probs=143.8

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      +.+||+|+|++|||||||++||+++.+.+.+.++.. +........++..+.+.+||++|+                   
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~-------------------   62 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ-------------------   62 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTG-------------------
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCc-------------------
Confidence            568999999999999999999999999988877776 566667778888999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +.+..++..++..+|++|+|||++++.||+.+..|+..+.+. .
T Consensus        63 ------------------------------------~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~-~  105 (173)
T d2a5ja1          63 ------------------------------------ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH-S  105 (173)
T ss_dssp             ------------------------------------GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-S
T ss_pred             ------------------------------------cchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHh-C
Confidence                                                677788888999999999999999999999999999988775 5


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..++|++|||||+|+...                               +.+..+++..+++ ..+++|+||||++|.||
T Consensus       106 ~~~~piilv~nK~D~~~~-------------------------------~~~~~~~~~~~a~-~~~~~~~e~Sa~tg~~V  153 (173)
T d2a5ja1         106 SSNMVIMLIGNKSDLESR-------------------------------RDVKREEGEAFAR-EHGLIFMETSAKTACNV  153 (173)
T ss_dssp             CTTCEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEEECTTTCTTH
T ss_pred             CCCCeEEEEecCCchhhh-------------------------------hhhHHHHHHHHHH-HcCCEEEEecCCCCCCH
Confidence            678999999999998776                               6778888999987 56788999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q psy1524         300 TQVFKELLVQAKVKY  314 (592)
Q Consensus       300 eeLf~~Li~~i~~~~  314 (592)
                      +++|..+++.+.++.
T Consensus       154 ~e~f~~i~~~i~~~~  168 (173)
T d2a5ja1         154 EEAFINTAKEIYRKI  168 (173)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999986543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.9e-29  Score=239.03  Aligned_cols=176  Identities=22%  Similarity=0.396  Sum_probs=150.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +.||+|+|++|||||||++||+.+.|.+.+.+|+.+...+.+.+++..+.+++||++|+                     
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~---------------------   60 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS---------------------   60 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCS---------------------
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeecccccccc---------------------
Confidence            47999999999999999999999999999999999888888999999999999999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        +.+..++..+++++|++|+|||++|++||+.+..|+..+... ...
T Consensus        61 ----------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~  105 (179)
T d1m7ba_          61 ----------------------------------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE-FCP  105 (179)
T ss_dssp             ----------------------------------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCT
T ss_pred             ----------------------------------ccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhc-cCC
Confidence                                              777778888899999999999999999999999877766554 356


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc-HH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN-IT  300 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g-Ve  300 (592)
                      ++|+||||||+|+.......                   ........+.|+.+++..+++......|+||||++|.| |+
T Consensus       106 ~~~iilVgnK~Dl~~~~~~~-------------------~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~  166 (179)
T d1m7ba_         106 NTKMLLVGCKSDLRTDVSTL-------------------VELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVR  166 (179)
T ss_dssp             TCEEEEEEECGGGGGCHHHH-------------------HHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHH
T ss_pred             cceEEEEEecccccccchhh-------------------HHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHH
Confidence            89999999999987642110                   00011234779999999999877778999999999985 99


Q ss_pred             HHHHHHHHHHHH
Q psy1524         301 QVFKELLVQAKV  312 (592)
Q Consensus       301 eLf~~Li~~i~~  312 (592)
                      ++|+.+++.++.
T Consensus       167 ~~F~~~~~~~l~  178 (179)
T d1m7ba_         167 DIFHVATLACVN  178 (179)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999998864

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.4e-29  Score=233.50  Aligned_cols=162  Identities=28%  Similarity=0.462  Sum_probs=147.6

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ..+||+|+|++|||||||+++|+.+.|.+.+.+|.+ +.....+..++..+.+.+|||+|+                   
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~-------------------   65 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ-------------------   65 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS-------------------
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCc-------------------
Confidence            358999999999999999999999999999999888 455667778899999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          ++|..++..+++++|++|+|||+++..+|+.+..|+..+.+. .
T Consensus        66 ------------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~  108 (170)
T d1r2qa_          66 ------------------------------------ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ-A  108 (170)
T ss_dssp             ------------------------------------GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-S
T ss_pred             ------------------------------------hhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhc-c
Confidence                                                889999999999999999999999999999999999988775 5


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      .+++|++|||||+|+...                               +.++.++++.+++ .+.++|+||||++|+||
T Consensus       109 ~~~~~iilvgnK~Dl~~~-------------------------------~~v~~e~~~~~~~-~~~~~~~e~SAk~g~~V  156 (170)
T d1r2qa_         109 SPNIVIALSGNKADLANK-------------------------------RAVDFQEAQSYAD-DNSLLFMETSAKTSMNV  156 (170)
T ss_dssp             CTTCEEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECCTTTCTTH
T ss_pred             CCCceEEeeccccccccc-------------------------------ccccHHHHHHHHH-hcCCEEEEeeCCCCCCH
Confidence            678999999999999876                               7889999999987 57789999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         300 TQVFKELLVQA  310 (592)
Q Consensus       300 eeLf~~Li~~i  310 (592)
                      +++|+.|++++
T Consensus       157 ~e~f~~l~~~i  167 (170)
T d1r2qa_         157 NEIFMAIAKKL  167 (170)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHHHH
Confidence            99999999876

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.5e-29  Score=235.32  Aligned_cols=167  Identities=25%  Similarity=0.413  Sum_probs=140.7

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      .-+||+|+|++|||||||+++|+...+. ..+.+|++ +.+.+.+.+++..+.+.+||+++.                  
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~------------------   63 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN------------------   63 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTT------------------
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccc------------------
Confidence            3589999999999999999999987664 33344444 788889999999999999998765                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                        +++++|  +...+++++|++|+|||++++.||+++..|+..+....
T Consensus        64 ----------------------------------~g~e~~--~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~  107 (172)
T d2g3ya1          64 ----------------------------------KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR  107 (172)
T ss_dssp             ----------------------------------THHHHH--HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSG
T ss_pred             ----------------------------------cccccc--cccccccccceeeeeecccccchhhhhhhhhhhhhhcc
Confidence                                              011444  55667899999999999999999999999999998766


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      ...++|+||||||+|+.+.                               +.++.++++.+++ ..+++|+||||++|.|
T Consensus       108 ~~~~~piilvgnK~Dl~~~-------------------------------~~v~~~~~~~~a~-~~~~~~~e~Sak~g~~  155 (172)
T d2g3ya1         108 QTEDIPIILVGNKSDLVRC-------------------------------REVSVSEGRACAV-VFDCKFIETSAAVQHN  155 (172)
T ss_dssp             GGTTSCEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HHTCEEEECBTTTTBS
T ss_pred             ccCCceEEEEecccccccc-------------------------------ccccHHHHHHHHH-HcCCeEEEEeCCCCcC
Confidence            6678999999999999876                               7889999999887 5678999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy1524         299 ITQVFKELLVQAKVK  313 (592)
Q Consensus       299 VeeLf~~Li~~i~~~  313 (592)
                      |+++|+.|++++..+
T Consensus       156 i~~~f~~l~~~i~~r  170 (172)
T d2g3ya1         156 VKELFEGIVRQVRLR  170 (172)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999998654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.2e-29  Score=232.67  Aligned_cols=167  Identities=26%  Similarity=0.385  Sum_probs=149.9

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      +++.+||+|+|++|||||||+++|+.+.|.+.+.+|.. +.....+..++..+.+.+|||+|+                 
T Consensus         2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~-----------------   64 (174)
T d2bmea1           2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ-----------------   64 (174)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCS-----------------
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCc-----------------
Confidence            46789999999999999999999999999998888887 445566777899999999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            +++..++..+++.+|++|+|||++++++|..+..|+..+...
T Consensus        65 --------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~  106 (174)
T d2bmea1          65 --------------------------------------ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARML  106 (174)
T ss_dssp             --------------------------------------GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             --------------------------------------hhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccc
Confidence                                                  889999999999999999999999999999999999998876


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                       ...++|+++|+||+|+...                               +.++.+.+..+++ ..+++|+||||++|+
T Consensus       107 -~~~~~piivv~nK~D~~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~e~Sak~~~  153 (174)
T d2bmea1         107 -ASQNIVIILCGNKKDLDAD-------------------------------REVTFLEASRFAQ-ENELMFLETSALTGE  153 (174)
T ss_dssp             -SCTTCEEEEEEECGGGGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECCTTTCT
T ss_pred             -cCCceEEEEEEecccccch-------------------------------hchhhhHHHHHHH-hCCCEEEEeeCCCCc
Confidence             4578999999999998765                               6778888888877 567899999999999


Q ss_pred             cHHHHHHHHHHHHHHh
Q psy1524         298 NITQVFKELLVQAKVK  313 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~  313 (592)
                      ||+++|..+++.+..+
T Consensus       154 gi~e~f~~l~~~i~~~  169 (174)
T d2bmea1         154 NVEEAFVQCARKILNK  169 (174)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999998755

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-29  Score=239.13  Aligned_cols=168  Identities=23%  Similarity=0.423  Sum_probs=147.3

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeC----------CeEEEEEEEeCCCCCCCCccc
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMN----------GVHLKLDILDTSGEQSGKGLK  127 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vd----------g~~v~L~I~DT~G~~~~~~~~  127 (592)
                      .++.+||+|+|++|||||||+++|+++.|.+.+.+|.. +.....+.++          +..+.+.+|||+|+       
T Consensus         2 ~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~-------   74 (186)
T d2f7sa1           2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ-------   74 (186)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH-------
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcc-------
Confidence            46789999999999999999999999999988888877 4445555443          34578999999999       


Q ss_pred             ccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH
Q psy1524         128 CGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI  207 (592)
Q Consensus       128 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l  207 (592)
                                                                      ++|..++..+++++|++|+|||++++.+|+.+
T Consensus        75 ------------------------------------------------e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~  106 (186)
T d2f7sa1          75 ------------------------------------------------ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV  106 (186)
T ss_dssp             ------------------------------------------------HHHHHHHHHHHTTCCEEEEEEETTCHHHHHHH
T ss_pred             ------------------------------------------------hhhHHHHHHHHhcCCEEEEEEeccccccceee
Confidence                                                            89999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCe
Q psy1524         208 RLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENG  287 (592)
Q Consensus       208 ~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~  287 (592)
                      ..|+..+........+|++|||||+|+...                               +.++.+++..+++ ..+++
T Consensus       107 ~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~-------------------------------~~v~~~e~~~~~~-~~~~~  154 (186)
T d2f7sa1         107 RNWMSQLQANAYCENPDIVLIGNKADLPDQ-------------------------------REVNERQARELAD-KYGIP  154 (186)
T ss_dssp             HHHHHTCCCCCTTTCCEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HTTCC
T ss_pred             eeccchhhhhccCCCceEEEEeeeccchhh-------------------------------hcchHHHHHHHHH-HcCCE
Confidence            999988776655678899999999999876                               7889999999988 45788


Q ss_pred             EEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524         288 FVEASAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       288 ~~EvSAktg~gVeeLf~~Li~~i~~~  313 (592)
                      |+||||++|+||+++|+.|++.+.++
T Consensus       155 ~~e~Sak~~~~i~e~f~~l~~~i~~k  180 (186)
T d2f7sa1         155 YFETSAATGQNVEKAVETLLDLIMKR  180 (186)
T ss_dssp             EEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999998654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.1e-29  Score=232.85  Aligned_cols=165  Identities=31%  Similarity=0.470  Sum_probs=147.9

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ..+||+|+|++|||||||+++|+.+.|.+.+.+|++ ++..+.+..++..+.+.+|||+|.                   
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~-------------------   62 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ-------------------   62 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS-------------------
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCc-------------------
Confidence            358999999999999999999999999999999988 566778889999999999999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +.+..++..++..+|++|+|||++++.||+++..|+..+... .
T Consensus        63 ------------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~  105 (170)
T d1ek0a_          63 ------------------------------------ERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ-A  105 (170)
T ss_dssp             ------------------------------------GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-S
T ss_pred             ------------------------------------hhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhccc-c
Confidence                                                788888999999999999999999999999999999887665 4


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ....|+++|+||+|+.+..                            ..+.++.+++..+++ ..+++|+||||++|.||
T Consensus       106 ~~~~~~~~v~nk~d~~~~~----------------------------~~~~v~~~~~~~~~~-~~~~~~~e~Sak~g~gV  156 (170)
T d1ek0a_         106 SKDIIIALVGNKIDMLQEG----------------------------GERKVAREEGEKLAE-EKGLLFFETSAKTGENV  156 (170)
T ss_dssp             CTTCEEEEEEECGGGGGSS----------------------------CCCCSCHHHHHHHHH-HHTCEEEECCTTTCTTH
T ss_pred             ccccceeeeeccccccccc----------------------------chhhhhHHHHHHHHH-HcCCEEEEecCCCCcCH
Confidence            6688999999999997651                            237889999999988 55679999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         300 TQVFKELLVQA  310 (592)
Q Consensus       300 eeLf~~Li~~i  310 (592)
                      +++|..|+++|
T Consensus       157 ~e~F~~i~~~i  167 (170)
T d1ek0a_         157 NDVFLGIGEKI  167 (170)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHHHh
Confidence            99999998776

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.3e-29  Score=232.59  Aligned_cols=165  Identities=31%  Similarity=0.483  Sum_probs=143.9

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ++.+||+|+|++|||||||+++|+++.+...+.+++. +.....+.+++..+.+.||||+|.                  
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~------------------   63 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ------------------   63 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSG------------------
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCc------------------
Confidence            6789999999999999999999999999988877776 666777889999999999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           ++|..++..+++.+|++|+|||++++.||..+..|+..+... 
T Consensus        64 -------------------------------------e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~-  105 (175)
T d2f9la1          64 -------------------------------------ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-  105 (175)
T ss_dssp             -------------------------------------GGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-
T ss_pred             -------------------------------------HHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHh-
Confidence                                                 788888889999999999999999999999999999998876 


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      ...++|++|||||+|+.+.                               +.+..+.+..+.+ ....+|++|||++|.|
T Consensus       106 ~~~~~piilvgnK~Dl~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~e~Sa~~g~~  153 (175)
T d2f9la1         106 ADSNIVIMLVGNKSDLRHL-------------------------------RAVPTDEARAFAE-KNNLSFIETSALDSTN  153 (175)
T ss_dssp             SCTTCEEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HTTCEEEECCTTTCTT
T ss_pred             cCCCCcEEEEEeeeccccc-------------------------------ccchHHHHHHhhc-ccCceEEEEecCCCcC
Confidence            4578999999999999866                               4556666666655 6678899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy1524         299 ITQVFKELLVQAKV  312 (592)
Q Consensus       299 VeeLf~~Li~~i~~  312 (592)
                      |+++|+.+++.+.+
T Consensus       154 i~e~f~~l~~~i~~  167 (175)
T d2f9la1         154 VEEAFKNILTEIYR  167 (175)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999854

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.3e-30  Score=240.01  Aligned_cols=162  Identities=23%  Similarity=0.369  Sum_probs=136.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      .+||+|+|++|||||||+++|+++.|.+.+.+|++ +...+.+.+++..+.+.+|||+|+                    
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~--------------------   62 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ--------------------   62 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTH--------------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccc--------------------
Confidence            48999999999999999999999999999999998 777888889999999999999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         +.+..++..+++++|++++|||+++++||+++..|+..+.+.  .
T Consensus        63 -----------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~--~  105 (170)
T d1i2ma_          63 -----------------------------------EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--C  105 (170)
T ss_dssp             -----------------------------------HHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHH--H
T ss_pred             -----------------------------------cccceecchhcccccchhhccccccccccchhHHHHHHHhhc--c
Confidence                                               677778888999999999999999999999999999988775  3


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      .++|+++||||+|+...                               +..  +++..+++ ..+++|+||||++|.||+
T Consensus       106 ~~~piilvgnK~Dl~~~-------------------------------~~~--~~~~~~~~-~~~~~~~e~Sak~~~~v~  151 (170)
T d1i2ma_         106 ENIPIVLCGNKVDIKDR-------------------------------KVK--AKSIVFHR-KKNLQYYDISAKSNYNFE  151 (170)
T ss_dssp             CSCCEEEEEECCCCSCS-------------------------------CCT--TTSHHHHS-SCSSEEEEEBTTTTBTTT
T ss_pred             CCCceeeecchhhhhhh-------------------------------hhh--hHHHHHHH-HcCCEEEEEeCCCCCCHH
Confidence            58999999999999754                               111  23344554 567899999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q psy1524         301 QVFKELLVQAKVKY  314 (592)
Q Consensus       301 eLf~~Li~~i~~~~  314 (592)
                      ++|+.|++.+....
T Consensus       152 e~f~~l~~~l~~~~  165 (170)
T d1i2ma_         152 KPFLWLARKLIGDP  165 (170)
T ss_dssp             HHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHccCC
Confidence            99999999986543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.5e-28  Score=235.37  Aligned_cols=171  Identities=29%  Similarity=0.477  Sum_probs=151.9

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ..++.+||+|+|++|||||||+++|+.+.+...+.+|++ ......+.+++..+.+.||||+|+                
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~----------------   65 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ----------------   65 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTT----------------
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCc----------------
Confidence            357889999999999999999999999999999999988 455667888999999999999999                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             ++|..++..++++||++|+|||++++++|..+..|+..+.+
T Consensus        66 ---------------------------------------e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~  106 (194)
T d2bcgy1          66 ---------------------------------------ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR  106 (194)
T ss_dssp             ---------------------------------------TTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------hhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhh
Confidence                                                   77778888899999999999999999999999999998876


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      . ...+.|+|+|+||+|+.+.                               +.++.+++..+++ ...+.|+||||++|
T Consensus       107 ~-~~~~~~iilv~nK~D~~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~e~SAk~g  153 (194)
T d2bcgy1         107 Y-ATSTVLKLLVGNKCDLKDK-------------------------------RVVEYDVAKEFAD-ANKMPFLETSALDS  153 (194)
T ss_dssp             H-SCTTCEEEEEEECTTCTTT-------------------------------CCSCHHHHHHHHH-HTTCCEEECCTTTC
T ss_pred             c-ccCCceEEEEEeccccccc-------------------------------cchhHHHHhhhhh-ccCcceEEEecCcC
Confidence            5 5678999999999999876                               6778888888877 56778999999999


Q ss_pred             ccHHHHHHHHHHHHHHhccc
Q psy1524         297 TNITQVFKELLVQAKVKYNL  316 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~~~~~~  316 (592)
                      .||+++|+.+++.+......
T Consensus       154 ~gi~e~f~~l~~~i~~~~~~  173 (194)
T d2bcgy1         154 TNVEDAFLTMARQIKESMSQ  173 (194)
T ss_dssp             TTHHHHHHHHHHHHHHHCCH
T ss_pred             ccHHHHHHHHHHHHHHHhhh
Confidence            99999999999998765544

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-28  Score=228.85  Aligned_cols=165  Identities=28%  Similarity=0.471  Sum_probs=139.2

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCc-cCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKY-KRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~-~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      ++..+||+|+|++|||||||+++|+.+.|.+.+ .++++ +.....+.+++..+.++||||+|+                
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------------   66 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ----------------   66 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------------
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCc----------------
Confidence            577899999999999999999999999987554 44444 666777888999999999999999                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             +.+..++..+++++|++++|||++++.||..+..|+..+..
T Consensus        67 ---------------------------------------e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  107 (170)
T d2g6ba1          67 ---------------------------------------ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHE  107 (170)
T ss_dssp             -----------------------------------------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             ---------------------------------------hhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhh
Confidence                                                   88888899999999999999999999999999999988877


Q ss_pred             hhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         217 TKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       217 ~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                      . .....|+++|+||+|+...                               +.++.+++..+++ ..+++|+||||++|
T Consensus       108 ~-~~~~~~iilv~~k~d~~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~e~Sak~g  154 (170)
T d2g6ba1         108 Y-AQHDVALMLLGNKVDSAHE-------------------------------RVVKREDGEKLAK-EYGLPFMETSAKTG  154 (170)
T ss_dssp             H-SCTTCEEEEEEECCSTTSC-------------------------------CCSCHHHHHHHHH-HHTCCEEECCTTTC
T ss_pred             c-cCCCceEEEEEeeechhhc-------------------------------ccccHHHHHHHHH-HcCCEEEEEeCCCC
Confidence            6 4567899999999998876                               6788899999987 55678999999999


Q ss_pred             ccHHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQAK  311 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~  311 (592)
                      .||+++|+.|++++.
T Consensus       155 ~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         155 LNVDLAFTAIAKELK  169 (170)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHcC
Confidence            999999999999874

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.7e-28  Score=228.04  Aligned_cols=167  Identities=28%  Similarity=0.523  Sum_probs=143.8

Q ss_pred             CCCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCC
Q psy1524          58 GHDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPK  136 (592)
Q Consensus        58 ~~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~  136 (592)
                      .++..+||+|+|++|||||||+++|+.+.|.+.+.+|+. ......+.+++..+.+.+||++|.                
T Consensus         2 ~~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~----------------   65 (174)
T d1wmsa_           2 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ----------------   65 (174)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCC----------------
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCc----------------
Confidence            346779999999999999999999999999999999888 455667778999999999999998                


Q ss_pred             CcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHH
Q psy1524         137 KWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFE  216 (592)
Q Consensus       137 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~  216 (592)
                                                             .++......++..+|++++|||++++.||+.+..|+.++.+
T Consensus        66 ---------------------------------------~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~  106 (174)
T d1wmsa_          66 ---------------------------------------ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIY  106 (174)
T ss_dssp             ---------------------------------------GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             ---------------------------------------ceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHH
Confidence                                                   66777788889999999999999999999999999988876


Q ss_pred             hh---cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEccc
Q psy1524         217 TK---ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASA  293 (592)
Q Consensus       217 ~~---~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSA  293 (592)
                      ..   ...+.|+||||||+|+.+                                +.++.++++.+++....++|+||||
T Consensus       107 ~~~~~~~~~~piilVgnK~Dl~~--------------------------------~~v~~~~~~~~~~~~~~~~~~e~Sa  154 (174)
T d1wmsa_         107 YADVKEPESFPFVILGNKIDISE--------------------------------RQVSTEEAQAWCRDNGDYPYFETSA  154 (174)
T ss_dssp             HHTCSCTTTSCEEEEEECTTCSS--------------------------------CSSCHHHHHHHHHHTTCCCEEECCT
T ss_pred             HhccccCCCceEEEeccccchhh--------------------------------ccCcHHHHHHHHHHcCCCeEEEEcC
Confidence            53   235689999999999853                                5688899999998667789999999


Q ss_pred             CCCccHHHHHHHHHHHHH
Q psy1524         294 KDNTNITQVFKELLVQAK  311 (592)
Q Consensus       294 ktg~gVeeLf~~Li~~i~  311 (592)
                      ++|+||+++|+.|+++++
T Consensus       155 k~~~gI~e~f~~l~~~il  172 (174)
T d1wmsa_         155 KDATNVAAAFEEAVRRVL  172 (174)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHh
Confidence            999999999999999885

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.3e-28  Score=230.52  Aligned_cols=168  Identities=26%  Similarity=0.453  Sum_probs=132.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceee-eEEEEEe-eCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEE-MHHEDFS-MNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d-~~~~~v~-vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      .+||+|+|++|||||||+++|+++.|.+.+.+|.+. ....... .+...+.+.+|||+|+                   
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~-------------------   62 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ-------------------   62 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---------------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCc-------------------
Confidence            589999999999999999999999999888888773 3333333 3556678899999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +++..++..+++.+|++++|||++++.||+.+..|+.++.....
T Consensus        63 ------------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~  106 (175)
T d1ky3a_          63 ------------------------------------ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHAN  106 (175)
T ss_dssp             --------------------------------------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC
T ss_pred             ------------------------------------hhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhh
Confidence                                                67777788889999999999999999999999999998876532


Q ss_pred             ---CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC
Q psy1524         220 ---STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN  296 (592)
Q Consensus       220 ---~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg  296 (592)
                         ..++|+|||+||+|+.+..                              +.++.++++.+++....++|++|||++|
T Consensus       107 ~~~~~~~piilv~nK~Dl~~~~------------------------------~~v~~~~~~~~~~~~~~~~~~e~SA~~g  156 (175)
T d1ky3a_         107 VNSPETFPFVILGNKIDAEESK------------------------------KIVSEKSAQELAKSLGDIPLFLTSAKNA  156 (175)
T ss_dssp             CSCTTTCCEEEEEECTTSCGGG------------------------------CCSCHHHHHHHHHHTTSCCEEEEBTTTT
T ss_pred             hcccccCcEEEEecccchhhhh------------------------------cchhHHHHHHHHHHcCCCeEEEEeCCCC
Confidence               3578999999999997651                              4577888999988666788999999999


Q ss_pred             ccHHHHHHHHHHHHHHhc
Q psy1524         297 TNITQVFKELLVQAKVKY  314 (592)
Q Consensus       297 ~gVeeLf~~Li~~i~~~~  314 (592)
                      .||+++|+.|++.++++.
T Consensus       157 ~gv~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         157 INVDTAFEEIARSALQQN  174 (175)
T ss_dssp             BSHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhcc
Confidence            999999999999887653

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=5.4e-29  Score=233.79  Aligned_cols=167  Identities=32%  Similarity=0.505  Sum_probs=121.4

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .++.+||+|+|++|||||||+++|+++.+.+.+.+|++ +.....+.+++..+.++||||+|+                 
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~-----------------   65 (173)
T d2fu5c1           3 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ-----------------   65 (173)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC--------------------
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCc-----------------
Confidence            46789999999999999999999999999988888887 677888899999999999999999                 


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                            +.|..++..+++.+|++|+|||++++.||+.+..|+..+...
T Consensus        66 --------------------------------------e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~  107 (173)
T d2fu5c1          66 --------------------------------------ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH  107 (173)
T ss_dssp             --------------------------------------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------hhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhh
Confidence                                                  778888888999999999999999999999999999988765


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                       ...+.|+++|+||+|+...                               +.+..+++..++. ..+++|++|||++|+
T Consensus       108 -~~~~~~iilv~~k~D~~~~-------------------------------~~~~~~~~~~~~~-~~~~~~~e~Sa~~g~  154 (173)
T d2fu5c1         108 -ASADVEKMILGNKCDVNDK-------------------------------RQVSKERGEKLAL-DYGIKFMETSAKANI  154 (173)
T ss_dssp             -SCTTCEEEEEEEC--CCSC-------------------------------CCSCHHHHHHHHH-HHTCEEEECCC---C
T ss_pred             -ccCCceEEEEEecccchhh-------------------------------cccHHHHHHHHHH-hcCCEEEEEeCCCCC
Confidence             5678999999999998765                               5667777887776 567889999999999


Q ss_pred             cHHHHHHHHHHHHHHh
Q psy1524         298 NITQVFKELLVQAKVK  313 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~  313 (592)
                      ||+++|++|++.+..+
T Consensus       155 gv~e~f~~l~~~i~~k  170 (173)
T d2fu5c1         155 NVENAFFTLARDIKAK  170 (173)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999998654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=4.7e-28  Score=224.63  Aligned_cols=160  Identities=25%  Similarity=0.448  Sum_probs=140.4

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      +.+||+|+|++|||||||++||+.+.|.+.+.++++ ....+.+.+....+.+.+||++|.                   
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------   61 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ-------------------   61 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCS-------------------
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCc-------------------
Confidence            368999999999999999999999999998888888 455677788999999999999998                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcch-hHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEF-PAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                          +.+ ...+..+++++|++|+|||++|+.||+.+..|+..+.+..
T Consensus        62 ------------------------------------~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~  105 (165)
T d1z06a1          62 ------------------------------------ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL  105 (165)
T ss_dssp             ------------------------------------HHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHC
T ss_pred             ------------------------------------hhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhc
Confidence                                                333 3356778999999999999999999999999999998876


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCC--
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDN--  296 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg--  296 (592)
                      ...++|++|||||+|+...                               +.++.++++.+++ .++++|+|||||+|  
T Consensus       106 ~~~~~pi~lvgnK~Dl~~~-------------------------------~~v~~~~~~~~~~-~~~~~~~e~SAkt~~~  153 (165)
T d1z06a1         106 LANDIPRILVGNKCDLRSA-------------------------------IQVPTDLAQKFAD-THSMPLFETSAKNPND  153 (165)
T ss_dssp             CCSCCCEEEEEECTTCGGG-------------------------------CCSCHHHHHHHHH-HTTCCEEECCSSSGGG
T ss_pred             cCCCCeEEEEeccccchhc-------------------------------cchhHHHHHHHHH-HCCCEEEEEecccCCc
Confidence            6778999999999999876                               7889999999987 56789999999974  


Q ss_pred             -ccHHHHHHHHH
Q psy1524         297 -TNITQVFKELL  307 (592)
Q Consensus       297 -~gVeeLf~~Li  307 (592)
                       .||+++|+.|+
T Consensus       154 ~~~V~e~F~~lA  165 (165)
T d1z06a1         154 NDHVEAIFMTLA  165 (165)
T ss_dssp             GSCHHHHHHHHC
T ss_pred             CcCHHHHHHHhC
Confidence             59999998873

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.3e-28  Score=227.86  Aligned_cols=165  Identities=21%  Similarity=0.352  Sum_probs=141.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      .+.+||+++|++|||||||+++|+++.|.. +.+|+.+.+.+.+.+++..+.+.||||+|+                   
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~-------------------   62 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGA-------------------   62 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEEEEEEEETTEEEEEEEEECSSC-------------------
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeEEEEeecCceEEEEEEeecccc-------------------
Confidence            457999999999999999999999999864 567777788888999999999999999998                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh-
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK-  218 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~-  218 (592)
                                                          +.+     .|++.||++|+|||++++.||+++..|+.++.... 
T Consensus        63 ------------------------------------~~~-----~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~  101 (175)
T d2bmja1          63 ------------------------------------PDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRG  101 (175)
T ss_dssp             ------------------------------------CCH-----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC
T ss_pred             ------------------------------------ccc-----ccccccceeEEEeecccchhhhhhHHHHHHHHHHhh
Confidence                                                332     26888999999999999999999999999887653 


Q ss_pred             -cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         219 -ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       219 -~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                       ....+|+++|+||.|+....                             .+.++.++++.+++..+.+.|+||||++|.
T Consensus       102 ~~~~~~pi~lV~~k~d~d~~~-----------------------------~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  152 (175)
T d2bmja1         102 EGRGGLALALVGTQDRISASS-----------------------------PRVVGDARARALCADMKRCSYYETCATYGL  152 (175)
T ss_dssp             --CCCCEEEEEEECTTCCSSS-----------------------------CCCSCHHHHHHHHHTSTTEEEEEEBTTTTB
T ss_pred             cccCCccEEEEeeecCcchhh-----------------------------hcchhHHHHHHHHHHhCCCeEEEeCCCCCc
Confidence             34577999999999986541                             267888899988776778899999999999


Q ss_pred             cHHHHHHHHHHHHHHhc
Q psy1524         298 NITQVFKELLVQAKVKY  314 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~~  314 (592)
                      ||+++|..+++.+....
T Consensus       153 ~v~~~F~~l~~~i~~~~  169 (175)
T d2bmja1         153 NVDRVFQEVAQKVVTLR  169 (175)
T ss_dssp             THHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999986654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-27  Score=225.67  Aligned_cols=168  Identities=27%  Similarity=0.391  Sum_probs=149.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ...+||+|+|++|||||||+++|+++.|.+.+.+++. ....+.+.+++..+.+.||||+|+                  
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------   66 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ------------------   66 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSS------------------
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCc------------------
Confidence            4568999999999999999999999999988888877 556677888999999999999999                  


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                           +++..++..++..+|++|+|||++++.+|+.+..|+..+.+..
T Consensus        67 -------------------------------------~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~  109 (177)
T d1x3sa1          67 -------------------------------------ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYC  109 (177)
T ss_dssp             -------------------------------------GGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCC
T ss_pred             -------------------------------------hhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccc
Confidence                                                 7788889999999999999999999999999999999987765


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCcc
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTN  298 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~g  298 (592)
                      .....|+++++||.|+..                                +.++.+++..+++ ..++.|++|||++|+|
T Consensus       110 ~~~~~~i~~~~nk~d~~~--------------------------------~~v~~~~~~~~~~-~~~~~~~e~Sa~tg~g  156 (177)
T d1x3sa1         110 TRNDIVNMLVGNKIDKEN--------------------------------REVDRNEGLKFAR-KHSMLFIEASAKTCDG  156 (177)
T ss_dssp             SCSCCEEEEEEECTTSSS--------------------------------CCSCHHHHHHHHH-HTTCEEEECCTTTCTT
T ss_pred             cccceeeEEEeecccccc--------------------------------ccccHHHHHHHHH-HCCCEEEEEeCCCCCC
Confidence            566789999999999653                                5678888898887 5678899999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q psy1524         299 ITQVFKELLVQAKVKYN  315 (592)
Q Consensus       299 VeeLf~~Li~~i~~~~~  315 (592)
                      |+++|+++++++.+...
T Consensus       157 v~e~f~~l~~~l~~~p~  173 (177)
T d1x3sa1         157 VQCAFEELVEKIIQTPG  173 (177)
T ss_dssp             HHHHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHHHHHccCcc
Confidence            99999999999976543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.5e-27  Score=221.98  Aligned_cols=163  Identities=31%  Similarity=0.521  Sum_probs=139.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      .+||+|+|++|||||||+++|+.+.+.+.+.+|++ +.....+.+++..+.+.||||+|+                    
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~--------------------   61 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ--------------------   61 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTG--------------------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCc--------------------
Confidence            58999999999999999999999999999999988 677788889999999999999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         +.|..++..+++++|++|+|||++++.||+.+..|+..+... ..
T Consensus        62 -----------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~  105 (166)
T d1g16a_          62 -----------------------------------ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH-AN  105 (166)
T ss_dssp             -----------------------------------GGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHH-SC
T ss_pred             -----------------------------------hhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhcc-cc
Confidence                                               778888889999999999999999999999999998888776 56


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      ...|+++++||.|+..                                +.+..+++..+++ ..+.+|++|||++|+||+
T Consensus       106 ~~~~~i~~~~k~d~~~--------------------------------~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~  152 (166)
T d1g16a_         106 DEAQLLLVGNKSDMET--------------------------------RVVTADQGEALAK-ELGIPFIESSAKNDDNVN  152 (166)
T ss_dssp             TTCEEEEEEECTTCTT--------------------------------CCSCHHHHHHHHH-HHTCCEEECBTTTTBSHH
T ss_pred             Ccceeeeecchhhhhh--------------------------------hhhhHHHHHHHHH-hcCCeEEEECCCCCCCHH
Confidence            6789999999999864                                3567788888887 556899999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy1524         301 QVFKELLVQAKVK  313 (592)
Q Consensus       301 eLf~~Li~~i~~~  313 (592)
                      ++|+.|++.+.++
T Consensus       153 e~f~~l~~~i~~k  165 (166)
T d1g16a_         153 EIFFTLAKLIQEK  165 (166)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988653

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=2.5e-27  Score=224.22  Aligned_cols=167  Identities=27%  Similarity=0.476  Sum_probs=143.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      .+||+|+|++|||||||+++|+++.|...+.+|++ +...+.+...+..+.+.+|||+|.                    
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~--------------------   61 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ--------------------   61 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSS--------------------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCc--------------------
Confidence            48999999999999999999999999999999987 677778888899999999999998                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc-
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA-  219 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~-  219 (592)
                                                         +.+..++..++..||++++|||+++..+|+.+..|+..+..... 
T Consensus        62 -----------------------------------~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~  106 (184)
T d1vg8a_          62 -----------------------------------ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASP  106 (184)
T ss_dssp             -----------------------------------GGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC
T ss_pred             -----------------------------------ccccccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhcc
Confidence                                               44445555678899999999999999999999999988876532 


Q ss_pred             --CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         220 --STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       220 --~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                        ..++|+||||||+|+.+                                +.+..++...++.....++|+||||++|.
T Consensus       107 ~~~~~ip~ilv~nK~Dl~~--------------------------------~~~~~~~~~~~~~~~~~~~~~e~Sak~~~  154 (184)
T d1vg8a_         107 RDPENFPFVVLGNKIDLEN--------------------------------RQVATKRAQAWCYSKNNIPYFETSAKEAI  154 (184)
T ss_dssp             SSGGGSCEEEEEECTTSSC--------------------------------CCSCHHHHHHHHHHTTSCCEEECBTTTTB
T ss_pred             ccccCCCEEEEEEeecccc--------------------------------cchhHHHHHHHHHHhcCCeEEEEcCCCCc
Confidence              34689999999999864                                35667777888776778999999999999


Q ss_pred             cHHHHHHHHHHHHHHhcc
Q psy1524         298 NITQVFKELLVQAKVKYN  315 (592)
Q Consensus       298 gVeeLf~~Li~~i~~~~~  315 (592)
                      ||+++|+.+++.+.++..
T Consensus       155 gI~e~f~~l~~~i~~~~~  172 (184)
T d1vg8a_         155 NVEQAFQTIARNALKQET  172 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccc
Confidence            999999999998876543

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.92  E-value=1.2e-25  Score=208.82  Aligned_cols=162  Identities=17%  Similarity=0.273  Sum_probs=128.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      .+||+|+|++|||||||+++|+.+.+.+.+.+|++..+ ..+..++  +.+.+||++|+                     
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~-~~~~~~~--~~~~i~D~~G~---------------------   57 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM-RKITKGN--VTIKLWDIGGQ---------------------   57 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE-EEEEETT--EEEEEEEECCS---------------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeee-eeeeeee--EEEEEeecccc---------------------
Confidence            58999999999999999999999999988888887322 3344554  67778999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        +.+...+..++..+|++++|||+++..+|+.+..|+..+.+.....
T Consensus        58 ----------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  103 (164)
T d1zd9a1          58 ----------------------------------PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ  103 (164)
T ss_dssp             ----------------------------------HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGT
T ss_pred             ----------------------------------ccccccccccccccchhhcccccccccccchhhhhhhhhhhhhccc
Confidence                                              7788888899999999999999999999999999988887765667


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|++||+||+|+......                            +.+....+...++ .....+++|||++|.||++
T Consensus       104 ~~pi~lv~nK~Dl~~~~~~----------------------------~~i~~~~~~~~~~-~~~~~~~e~Sa~~g~gv~e  154 (164)
T d1zd9a1         104 GIPVLVLGNKRDLPGALDE----------------------------KELIEKMNLSAIQ-DREICCYSISCKEKDNIDI  154 (164)
T ss_dssp             TCCEEEEEECTTSTTCCCH----------------------------HHHHHHTTGGGCC-SSCEEEEECCTTTCTTHHH
T ss_pred             CCcEEEEEeccccchhhhH----------------------------HHHHHHHHHHHHH-hCCCEEEEEeCcCCcCHHH
Confidence            8999999999998754100                            0011111111111 3355799999999999999


Q ss_pred             HHHHHHHHH
Q psy1524         302 VFKELLVQA  310 (592)
Q Consensus       302 Lf~~Li~~i  310 (592)
                      +|++|++.+
T Consensus       155 ~~~~l~~~~  163 (164)
T d1zd9a1         155 TLQWLIQHS  163 (164)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHcc
Confidence            999998754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.92  E-value=1.4e-24  Score=202.74  Aligned_cols=158  Identities=18%  Similarity=0.277  Sum_probs=123.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ++.+||+|+|++|||||||+|+|+++.+... .++++ +....+...+  +.+.+||++|.                   
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~-~~~~~i~~~~--~~~~i~d~~g~-------------------   70 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG-FNIKSVQSQG--FKLNVWDIGGQ-------------------   70 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETT-EEEEEEEETT--EEEEEEECSSC-------------------
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeee-eeEEEeccCC--eeEeEeecccc-------------------
Confidence            5679999999999999999999998887532 22222 3334444444  67788999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +.++.++..++..+|++|+|||++|..+|.++..++..+.....
T Consensus        71 ------------------------------------~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~  114 (176)
T d1fzqa_          71 ------------------------------------RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK  114 (176)
T ss_dssp             ------------------------------------GGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG
T ss_pred             ------------------------------------ccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhc
Confidence                                                88889999999999999999999999999999998888776655


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHH---Hh-hcCCCeEEEcccCC
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESV---VQ-VDWENGFVEASAKD  295 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~l---a~-~~~~~~~~EvSAkt  295 (592)
                      ..++|++||+||+|+.+..                                 ........   .. ......+++|||++
T Consensus       115 ~~~~pillv~nK~Dl~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~SA~t  161 (176)
T d1fzqa_         115 LSCVPVLIFANKQDLLTAA---------------------------------PASEIAEGLNLHTIRDRVWQIQSCSALT  161 (176)
T ss_dssp             GTTCCEEEEEECTTSTTCC---------------------------------CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             cCCCeEEEEEEeccccccc---------------------------------cHHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence            6789999999999997641                                 11111111   11 12355799999999


Q ss_pred             CccHHHHHHHHHHH
Q psy1524         296 NTNITQVFKELLVQ  309 (592)
Q Consensus       296 g~gVeeLf~~Li~~  309 (592)
                      |+||+|+|++|+++
T Consensus       162 g~gv~e~~~~l~~~  175 (176)
T d1fzqa_         162 GEGVQDGMNWVCKN  175 (176)
T ss_dssp             CTTHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHhc
Confidence            99999999999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.92  E-value=7.4e-25  Score=202.84  Aligned_cols=158  Identities=16%  Similarity=0.269  Sum_probs=123.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      .+||+|+|++|||||||+++|.+..+. .+.+|.+ .....+..++  +.+.+|||+|+                     
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~~~D~~G~---------------------   56 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLG-FNIKTLEHRG--FKLNIWDVGGQ---------------------   56 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSS-EEEEEEEETT--EEEEEEEECCS---------------------
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEe-eeeeeccccc--cceeeeecCcc---------------------
Confidence            589999999999999999999987664 4566665 2333344454  67778999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                        +.++.+...++..+|++++|||++|..++..+..++..+.......
T Consensus        57 ----------------------------------~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~  102 (165)
T d1ksha_          57 ----------------------------------KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLA  102 (165)
T ss_dssp             ----------------------------------HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGT
T ss_pred             ----------------------------------hhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccC
Confidence                                              6777777788999999999999999999999988877766554567


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh----hcCCCeEEEcccCCCc
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ----VDWENGFVEASAKDNT  297 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~----~~~~~~~~EvSAktg~  297 (592)
                      ++|++||+||+|+.+.                                 ...++......    ....+.+++|||++|+
T Consensus       103 ~~p~iiv~nK~Dl~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  149 (165)
T d1ksha_         103 GATLLIFANKQDLPGA---------------------------------LSCNAIQEALELDSIRSHHWRIQGCSAVTGE  149 (165)
T ss_dssp             TCEEEEEEECTTSTTC---------------------------------CCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             CCceEEEEeccccccc---------------------------------cCHHHHHHHHHhhhhhcCCCEEEEEECCCCC
Confidence            8999999999999754                                 12222222211    1224579999999999


Q ss_pred             cHHHHHHHHHHHHH
Q psy1524         298 NITQVFKELLVQAK  311 (592)
Q Consensus       298 gVeeLf~~Li~~i~  311 (592)
                      ||+++|++|++++.
T Consensus       150 gv~e~~~~l~~~i~  163 (165)
T d1ksha_         150 DLLPGIDWLLDDIS  163 (165)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999999885

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.91  E-value=1.9e-24  Score=196.82  Aligned_cols=160  Identities=12%  Similarity=0.153  Sum_probs=125.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      +||+|+|++|||||||+++|+++.+...+..+...    ....+...+.+.+||++|.                      
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~g~----------------------   54 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQ----------------------   54 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC----EEEEECSSCEEEEEECCCC----------------------
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE----EEEEeeeeEEEEEecCCCc----------------------
Confidence            59999999999999999999998887655444332    2234556678888999999                      


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCC
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTA  222 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~  222 (592)
                                                       +.+......++..++++++|||++++.++..+..|+..+........
T Consensus        55 ---------------------------------~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  101 (160)
T d1r8sa_          55 ---------------------------------DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRD  101 (160)
T ss_dssp             ---------------------------------GGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT
T ss_pred             ---------------------------------ccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccC
Confidence                                             77788888999999999999999999999999999888877666678


Q ss_pred             CCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHH
Q psy1524         223 VPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQV  302 (592)
Q Consensus       223 ~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeL  302 (592)
                      .|+++|+||+|+.+....                            +++..+....+++ .....+++|||++|+||+++
T Consensus       102 ~~i~~v~~k~d~~~~~~~----------------------------~~i~~~~~~~~~~-~~~~~~~~~SAktg~gi~e~  152 (160)
T d1r8sa_         102 AVLLVFANKQDLPNAMNA----------------------------AEITDKLGLHSLR-HRNWYIQATCATSGDGLYEG  152 (160)
T ss_dssp             CEEEEEEECTTSTTCCCH----------------------------HHHHHHTTGGGCS-SCCEEEEECBTTTTBTHHHH
T ss_pred             ceEEEEeecccccccccH----------------------------HHHHHHHHHHHHh-hCCCEEEEeECCCCCCHHHH
Confidence            899999999998764110                            1111122222322 34567999999999999999


Q ss_pred             HHHHHHHH
Q psy1524         303 FKELLVQA  310 (592)
Q Consensus       303 f~~Li~~i  310 (592)
                      |++|++++
T Consensus       153 ~~~l~~~l  160 (160)
T d1r8sa_         153 LDWLSNQL  160 (160)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99998763

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.90  E-value=8.2e-25  Score=204.78  Aligned_cols=163  Identities=15%  Similarity=0.254  Sum_probs=121.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||++||+.+.+... .+|.. .........  .+.+.+||++|.                   
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~-~~~~~~~~~--~~~~~i~D~~g~-------------------   66 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG-FNVETVTYK--NVKFNVWDVGGQ-------------------   66 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETT-EEEEEEEET--TEEEEEEEESCC-------------------
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceee-eeEEEeecc--ceeeEEecCCCc-------------------
Confidence            3469999999999999999999998876532 23332 222333333  467788999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +.++..+..++..+|++|+|||+++..++..+..|+..+.+...
T Consensus        67 ------------------------------------~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~  110 (173)
T d1e0sa_          67 ------------------------------------DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE  110 (173)
T ss_dssp             ------------------------------------GGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGG
T ss_pred             ------------------------------------chhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcc
Confidence                                                77788888899999999999999999999999998888776555


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..+.|+++|+||+|+.+....                            ..+....+...+. ...+.+++|||++|+||
T Consensus       111 ~~~~piiiv~NK~Dl~~~~~~----------------------------~~i~~~~~~~~~~-~~~~~~~e~SA~tg~gv  161 (173)
T d1e0sa_         111 MRDAIILIFANKQDLPDAMKP----------------------------HEIQEKLGLTRIR-DRNWYVQPSCATSGDGL  161 (173)
T ss_dssp             GTTCEEEEEEECTTSTTCCCH----------------------------HHHHHHTTGGGCC-SSCEEEEECBTTTTBTH
T ss_pred             cccceeeeeeecccccccccH----------------------------HHHHHHHHHHHHH-hCCCEEEEeeCCCCcCH
Confidence            678999999999999754110                            0011111111111 23456899999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         300 TQVFKELLVQA  310 (592)
Q Consensus       300 eeLf~~Li~~i  310 (592)
                      +|+|++|.+.+
T Consensus       162 ~e~~~~l~~~~  172 (173)
T d1e0sa_         162 YEGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            99999998764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.90  E-value=3.5e-24  Score=201.83  Aligned_cols=162  Identities=19%  Similarity=0.238  Sum_probs=120.9

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      .+.+||+|+|++|||||||+++|..+.+.. ..+|.+.. ...+..++  +.+.+||++|+                   
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~i~D~~g~-------------------   71 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFN-VETLSYKN--LKLNVWDLGGQ-------------------   71 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCC-EEEEEETT--EEEEEEEEC---------------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceE-EEEEeeCC--EEEEEEecccc-------------------
Confidence            557999999999999999999999776643 33454422 22333444  67778999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +.++.++..++..+|++++|||++|..++..+..|+..+.....
T Consensus        72 ------------------------------------~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~  115 (182)
T d1moza_          72 ------------------------------------TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE  115 (182)
T ss_dssp             --------------------------------------CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST
T ss_pred             ------------------------------------cccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhc
Confidence                                                67777888889999999999999999999999988877666545


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh----hcCCCeEEEcccCC
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ----VDWENGFVEASAKD  295 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~----~~~~~~~~EvSAkt  295 (592)
                      ..++|++||+||+|+.+.                                 ++.++......    ......|++|||++
T Consensus       116 ~~~~piliv~NK~Dl~~~---------------------------------~~~~~i~~~~~~~~~~~~~~~~~e~SA~~  162 (182)
T d1moza_         116 LQDAALLVFANKQDQPGA---------------------------------LSASEVSKELNLVELKDRSWSIVASSAIK  162 (182)
T ss_dssp             TSSCEEEEEEECTTSTTC---------------------------------CCHHHHHHHTTTTTCCSSCEEEEEEBGGG
T ss_pred             cCCcceEEEEEeeccccc---------------------------------cCHHHHHHHHHHHHHhhCCCEEEEEECCC
Confidence            668999999999999753                                 12222222111    12345799999999


Q ss_pred             CccHHHHHHHHHHHHHHh
Q psy1524         296 NTNITQVFKELLVQAKVK  313 (592)
Q Consensus       296 g~gVeeLf~~Li~~i~~~  313 (592)
                      |+||+++|++|++.+.++
T Consensus       163 g~gv~e~~~~l~~~i~~~  180 (182)
T d1moza_         163 GEGITEGLDWLIDVIKEE  180 (182)
T ss_dssp             TBTHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc
Confidence            999999999999998654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=3.5e-21  Score=180.61  Aligned_cols=165  Identities=19%  Similarity=0.209  Sum_probs=114.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .+.-+|+|+|.+|||||||+|+|++...  ......|+.+.........+..  +.+|||+|+......           
T Consensus         3 ~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~--~~~~DtpG~~~~~~~-----------   69 (178)
T d1wf3a1           3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQ--IVFVDTPGLHKPMDA-----------   69 (178)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEE--EEEEECCCCCCCCSH-----------
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeee--eeecccccccccccc-----------
Confidence            3445899999999999999999997753  3455666666666666667754  455999998221100           


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                                                          ..+.+......++.+||++|+|+|+++..+..+ ..|...+...
T Consensus        70 ------------------------------------~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~  112 (178)
T d1wf3a1          70 ------------------------------------LGEFMDQEVYEALADVNAVVWVVDLRHPPTPED-ELVARALKPL  112 (178)
T ss_dssp             ------------------------------------HHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGG
T ss_pred             ------------------------------------cchhcccccccccccccceeeeechhhhhcccc-cchhhheecc
Confidence                                                002233334456789999999999998766543 3344555443


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                        ..++|+|+|+||+|+....                                  .+....+.+......+++|||++|.
T Consensus       113 --~~~~piilv~NK~Dl~~~~----------------------------------~~~~~~~~~~~~~~~~~~iSA~~~~  156 (178)
T d1wf3a1         113 --VGKVPILLVGNKLDAAKYP----------------------------------EEAMKAYHELLPEAEPRMLSALDER  156 (178)
T ss_dssp             --TTTSCEEEEEECGGGCSSH----------------------------------HHHHHHHHHTSTTSEEEECCTTCHH
T ss_pred             --ccchhhhhhhcccccccCH----------------------------------HHHHHHHHhhcccCceEEEecCCCC
Confidence              4578999999999986541                                  1223344443445678999999999


Q ss_pred             cHHHHHHHHHHHH
Q psy1524         298 NITQVFKELLVQA  310 (592)
Q Consensus       298 gVeeLf~~Li~~i  310 (592)
                      ||++|++.|++.+
T Consensus       157 gi~~L~~~i~~~l  169 (178)
T d1wf3a1         157 QVAELKADLLALM  169 (178)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999998765

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.85  E-value=1.5e-20  Score=174.57  Aligned_cols=158  Identities=16%  Similarity=0.228  Sum_probs=115.9

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      +.+||+|+|.+|||||||++||.++.+.+.. ++.. .....+...+  +.+.+||+++.                    
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~-~~~~~~~~~~--~~~~~~d~~~~--------------------   69 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG-SNVEEIVINN--TRFLMWDIGGQ--------------------   69 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSC-SSCEEEEETT--EEEEEEECCC---------------------
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccc-eeEEEEeecc--eEEEEeccccc--------------------
Confidence            4589999999999999999999998876432 2222 1223333444  56667999988                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                         +.+......++..++++++|+|.++..++.....++..+......
T Consensus        70 -----------------------------------~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~  114 (177)
T d1zj6a1          70 -----------------------------------ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL  114 (177)
T ss_dssp             --------------------------------------CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGG
T ss_pred             -----------------------------------cccccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccc
Confidence                                               555566677788999999999999999999988877766665556


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh----hcCCCeEEEcccCCC
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ----VDWENGFVEASAKDN  296 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~----~~~~~~~~EvSAktg  296 (592)
                      ...|+++|+||+|+....                                 ..++......    ......+++|||++|
T Consensus       115 ~~~p~iiv~nK~Dl~~~~---------------------------------~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg  161 (177)
T d1zj6a1         115 RKAGLLIFANKQDVKECM---------------------------------TVAEISQFLKLTSIKDHQWHIQACCALTG  161 (177)
T ss_dssp             TTCEEEEEEECTTSTTCC---------------------------------CHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred             cceEEEEEEEcccccccC---------------------------------cHHHHHHHHHHHhhHhcCCEEEEEeCCCC
Confidence            789999999999987541                                 1122222111    133567999999999


Q ss_pred             ccHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQA  310 (592)
Q Consensus       297 ~gVeeLf~~Li~~i  310 (592)
                      +||+|+|++|++++
T Consensus       162 ~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         162 EGLCQGLEWMMSRL  175 (177)
T ss_dssp             BTHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999887

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.84  E-value=1.6e-20  Score=171.42  Aligned_cols=165  Identities=18%  Similarity=0.231  Sum_probs=120.7

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|||++|||||||+++|+++.+...+ +|.. ........++  +.+.+||+++.                   
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~-~~~~~~~~~~--~~~~~~~~~~~-------------------   59 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG-FNVETVTYKN--LKFQVWDLGGL-------------------   59 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSS-EEEEEEEETT--EEEEEEEECCC-------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhCCCCccee-cccc-eeeeeeccCc--eEEEEeecccc-------------------
Confidence            34689999999999999999999999887532 3333 2223334444  56667999888                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          +.+......++..++++++++|+++..++.....++........
T Consensus        60 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (169)
T d1upta_          60 ------------------------------------TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE  103 (169)
T ss_dssp             ------------------------------------GGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG
T ss_pred             ------------------------------------ccccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhc
Confidence                                                44555555667889999999999999999988887776665555


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ....|+++|+||.|+......                            ..+..+.+..++. ...++|++|||++|+||
T Consensus       104 ~~~~~i~iv~nk~Dl~~~~~~----------------------------~~i~~~~~~~~~~-~~~~~~~~~SA~~g~gv  154 (169)
T d1upta_         104 LRKAILVVFANKQDMEQAMTS----------------------------SEMANSLGLPALK-DRKWQIFKTSATKGTGL  154 (169)
T ss_dssp             GTTCEEEEEEECTTSTTCCCH----------------------------HHHHHHHTGGGCT-TSCEEEEECCTTTCTTH
T ss_pred             cccceEEEEEeeccccccccH----------------------------HHHHHHHHHHHHh-cCCCEEEEEeCCCCCCH
Confidence            678999999999999764110                            0111111122222 34568999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1524         300 TQVFKELLVQAKV  312 (592)
Q Consensus       300 eeLf~~Li~~i~~  312 (592)
                      +++|+.|++.+..
T Consensus       155 ~e~~~~l~~~l~~  167 (169)
T d1upta_         155 DEAMEWLVETLKS  167 (169)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998854

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=3.4e-21  Score=176.72  Aligned_cols=158  Identities=20%  Similarity=0.285  Sum_probs=115.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      +||+|+|.+|||||||+|+|++....  ..+..++.+.....+...+..+  .++|++|..+....             .
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~g~~~~~~~-------------~   66 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPL--HIIDTAGLREASDE-------------V   66 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEE--EEEECCCCSCCSSH-------------H
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCcee--eecccccccccccc-------------c
Confidence            79999999999999999999976543  4445555566666777777554  45999998221100             0


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcC
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAS  220 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~  220 (592)
                                                        ..........++..+|++++++|+++..+++....|...+...  .
T Consensus        67 ----------------------------------~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~  110 (161)
T d2gj8a1          67 ----------------------------------ERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARL--P  110 (161)
T ss_dssp             ----------------------------------HHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHS--C
T ss_pred             ----------------------------------hhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhc--c
Confidence                                              0112223345688999999999999999888888776666554  4


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      .+.|+|+|+||+|+..+...                                      + ......+++++||++|.||+
T Consensus       111 ~~~~iilv~NK~Dl~~~~~~--------------------------------------~-~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1         111 AKLPITVVRNKADITGETLG--------------------------------------M-SEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TTCCEEEEEECHHHHCCCCE--------------------------------------E-EEETTEEEEECCTTTCTTHH
T ss_pred             cccceeeccchhhhhhhHHH--------------------------------------H-HHhCCCcEEEEECCCCCCHH
Confidence            57899999999998765110                                      0 11345679999999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         301 QVFKELLVQA  310 (592)
Q Consensus       301 eLf~~Li~~i  310 (592)
                      +|+++|++.+
T Consensus       152 ~L~~~l~~~l  161 (161)
T d2gj8a1         152 VLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            9999998753

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=1.4e-21  Score=183.72  Aligned_cols=173  Identities=18%  Similarity=0.166  Sum_probs=116.0

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      +.+||+|+|+.|||||||++||..+.+.+.+.      .+.  .++...+.+++|||+|+                    
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~~------~~~--~~~~~~~~~~i~D~~Gq--------------------   52 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGI------VET--HFTFKDLHFKMFDVGGQ--------------------   52 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCSE------EEE--EEEETTEEEEEEEECCS--------------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCccE------EEE--EEEeeeeeeeeeccccc--------------------
Confidence            35899999999999999999999776654322      122  33444577888999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHH----------HHHH
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEE----------IRLI  210 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~----------l~~~  210 (592)
                                                         +.+..++..|++.++++++|||+++..+|..          ...+
T Consensus        53 -----------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~   97 (195)
T d1svsa1          53 -----------------------------------RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL   97 (195)
T ss_dssp             -----------------------------------GGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHH
T ss_pred             -----------------------------------cccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHH
Confidence                                               8899999999999999999999999887632          2223


Q ss_pred             HHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHH-----HHhh---
Q psy1524         211 RDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTES-----VVQV---  282 (592)
Q Consensus       211 l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~-----la~~---  282 (592)
                      +..+.........|+++|+||+|+....-    ......            .............++..     +...   
T Consensus        98 ~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  161 (195)
T d1svsa1          98 FDSICNNKWFTDTSIILFLNKKDLFEEKI----KKSPLT------------ICYPEYAGSNTYEEAAAYIQCQFEDLNKR  161 (195)
T ss_dssp             HHHHHTCGGGTTSEEEEEEECHHHHHHHT----TTSCGG------------GTCTTCCSCSSHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHhcccccCCCCEEEEeccchhhhhhc----cchHHH------------HHhhhhcCcccHHHHHHHHHHHHHHHhcc
Confidence            33333333567889999999999865410    000000            00011111222222221     1111   


Q ss_pred             --cCCCeEEEcccCCCccHHHHHHHHHHHHHH
Q psy1524         283 --DWENGFVEASAKDNTNITQVFKELLVQAKV  312 (592)
Q Consensus       283 --~~~~~~~EvSAktg~gVeeLf~~Li~~i~~  312 (592)
                        ...+.+++|||++|.||+++|+.+.+.+++
T Consensus       162 ~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         162 KDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             TTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence              123347799999999999999999887754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.3e-19  Score=163.87  Aligned_cols=164  Identities=17%  Similarity=0.309  Sum_probs=114.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV  143 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~  143 (592)
                      ||+|+|++|||||||+|+|+++.+. .+.+|.... ......++.  .+.+||+.|.                       
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~-~~~~~~~~~--~~~~~~~~~~-----------------------   54 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGNI--KFTTFDLGGH-----------------------   54 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEECCTTC--CEEEEECCCS-----------------------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEe-EEEeccCCe--eEEEEeeccc-----------------------
Confidence            8999999999999999999998876 345555532 333444443  4556999998                       


Q ss_pred             HHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC
Q psy1524         144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV  223 (592)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~  223 (592)
                                                      ..+..+...++..++++++|+|+++..++..+..++..+.......+.
T Consensus        55 --------------------------------~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (166)
T d2qtvb1          55 --------------------------------IQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDV  102 (166)
T ss_dssp             --------------------------------GGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTC
T ss_pred             --------------------------------hhhhhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCc
Confidence                                            455556666788899999999999999999988888877776667789


Q ss_pred             CEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHH
Q psy1524         224 PIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVF  303 (592)
Q Consensus       224 PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf  303 (592)
                      |+++++||.|+.......+     ....+                ....... .........+.+++|||++|+||+|+|
T Consensus       103 ~i~i~~~k~d~~~~~~~~~-----i~~~~----------------~~~~~~~-~~~~~~~~~~~~~~~SA~tg~Gv~e~~  160 (166)
T d2qtvb1         103 PFVILGNKIDAPNAVSEAE-----LRSAL----------------GLLNTTG-SQRIEGQRPVEVFMCSVVMRNGYLEAF  160 (166)
T ss_dssp             CEEEEEECTTSSSCCCHHH-----HHHHH----------------TCSSCCC----CCSSCCEEEEEEBTTTTBSHHHHH
T ss_pred             eEEEEeccccccccCCHHH-----HHHHh----------------hhhhhhH-HHhhcccCCCEEEEeeCCCCCCHHHHH
Confidence            9999999999875310000     00000                0000000 001111334569999999999999999


Q ss_pred             HHHHH
Q psy1524         304 KELLV  308 (592)
Q Consensus       304 ~~Li~  308 (592)
                      ++|.+
T Consensus       161 ~~l~~  165 (166)
T d2qtvb1         161 QWLSQ  165 (166)
T ss_dssp             HHHTT
T ss_pred             HHHhC
Confidence            99864

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=2.4e-20  Score=175.69  Aligned_cols=176  Identities=16%  Similarity=0.106  Sum_probs=122.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      .+||+|+|+.|||||||++||+.+.|  .+.||++-.. ..  +....+.+++||++|+                     
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~-~~--~~~~~~~~~~~d~~g~---------------------   55 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIE-YP--FDLQSVIFRMVDVGGQ---------------------   55 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEE-EE--EECSSCEEEEEECCCS---------------------
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEE-EE--Eeccceeeeecccccc---------------------
Confidence            58999999999999999999998887  4678988322 22  3344567788999999                     


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCC-----------HHHHHHH
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNS-----------FEEIRLI  210 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~S-----------fe~l~~~  210 (592)
                                                        +.++.++..++..++++++|||.++..+           ++.+..|
T Consensus        56 ----------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~  101 (200)
T d2bcjq2          56 ----------------------------------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALF  101 (200)
T ss_dssp             ----------------------------------TTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHH
T ss_pred             ----------------------------------ccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHH
Confidence                                              8888899999999999999999987643           4555656


Q ss_pred             HHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh--------
Q psy1524         211 RDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV--------  282 (592)
Q Consensus       211 l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~--------  282 (592)
                      ...+... ...+.|+++|+||+|+.....    ...........           ......+...+..+...        
T Consensus       102 ~~~l~~~-~~~~~~~~~v~NK~Dl~~~~~----~~~~~~~~~~~-----------~~~~~~~~~~~~~~i~~~f~~~~~~  165 (200)
T d2bcjq2         102 RTIITYP-WFQNSSVILFLNKKDLLEEKI----MYSHLVDYFPE-----------YDGPQRDAQAAREFILKMFVDLNPD  165 (200)
T ss_dssp             HHHHHCG-GGSSSEEEEEEECHHHHHHHT----TTSCHHHHSTT-----------CCSCSSCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHhhh-hccCccEEEecchhhhhhhcc----cchHHHHhccc-----------ccCCchhHHHHHHHHHHHHHHhccc
Confidence            6655443 457899999999999976411    00111111100           01122233333332211        


Q ss_pred             -cCCCeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524         283 -DWENGFVEASAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       283 -~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~  313 (592)
                       ...+.+++|||++|.||+++|+.+.+.|.+.
T Consensus       166 ~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         166 SDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             TTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence             1233478999999999999999998888644

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.80  E-value=1.9e-19  Score=166.67  Aligned_cols=175  Identities=14%  Similarity=0.215  Sum_probs=110.0

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      .+..||+|||++|||||||+++|+++.+...+ ++.... ...+.+++..  +.+||+.+.                   
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~-~~~~~~~~~~--~~~~~~~~~-------------------   67 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPT-SEELTIAGMT--FTTFDLGGH-------------------   67 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETTEE--EEEEEECC--------------------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-cccccc-eeEEEecccc--cccccccch-------------------
Confidence            34589999999999999999999988876443 333322 2334556654  455999888                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                          ..+......++..++++++|+|+++...+.....++..+.....
T Consensus        68 ------------------------------------~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~  111 (186)
T d1f6ba_          68 ------------------------------------IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDET  111 (186)
T ss_dssp             ---------------------------------------CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG
T ss_pred             ------------------------------------hhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccc
Confidence                                                33334445568889999999999999999988877766665555


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                      ..+.|+++++||.|+........     ....+ .+...          .......... ........+++|||++|+||
T Consensus       112 ~~~~~~li~~~K~D~~~~~~~~~-----i~~~~-~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~SA~tg~Gi  174 (186)
T d1f6ba_         112 IANVPILILGNKIDRPEAISEER-----LREMF-GLYGQ----------TTGKGSVSLK-ELNARPLEVFMCSVLKRQGY  174 (186)
T ss_dssp             GTTSCEEEEEECTTSTTCCCHHH-----HHHHH-TCTTT----------CCCSSCCCTT-TCCSCCEEEEECBTTTTBSH
T ss_pred             cCCCceEEEEeccCccccCCHHH-----HHHHH-hhccc----------chhhhhhhHH-HhhcCCCEEEEEeCCCCCCH
Confidence            67899999999999865310000     00000 00000          0000000000 01123457999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         300 TQVFKELLVQA  310 (592)
Q Consensus       300 eeLf~~Li~~i  310 (592)
                      +|+|++|++++
T Consensus       175 ~e~~~~l~~~i  185 (186)
T d1f6ba_         175 GEGFRWMAQYI  185 (186)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHhh
Confidence            99999998754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.2e-19  Score=171.71  Aligned_cols=177  Identities=16%  Similarity=0.209  Sum_probs=113.9

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      +.+||+|+|++|||||||++||.   +...+.||++- ....+...+  +.+++||++|+                    
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~-~~~~~~~~~--~~~~~~D~~gq--------------------   54 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGI-HEYDFEIKN--VPFKMVDVGGQ--------------------   54 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSE-EEEEEEETT--EEEEEEEECC---------------------
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeee-EEEEEeeee--eeeeeecccce--------------------
Confidence            35899999999999999999994   56677888872 233344444  67777999999                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCC----------HHHHHHH
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNS----------FEEIRLI  210 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~S----------fe~l~~~  210 (592)
                                                         +.++..+..+++.++++++|||.++..+          ++....+
T Consensus        55 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (200)
T d1zcba2          55 -----------------------------------RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNI   99 (200)
T ss_dssp             -----------------------------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHH
T ss_pred             -----------------------------------eeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHH
Confidence                                               6677777788999999999999998655          3445555


Q ss_pred             HHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh--------
Q psy1524         211 RDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV--------  282 (592)
Q Consensus       211 l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~--------  282 (592)
                      +..+.+.....++|++||+||+|+.+..-    .......+..+..           ...-..+.+..+...        
T Consensus       100 ~~~i~~~~~~~~~piilv~NK~Dl~~~~~----~~~~~~~~f~~~~-----------~~~~~~~~~~~~~~~~f~~~~~~  164 (200)
T d1zcba2         100 FETIVNNRVFSNVSIILFLNKTDLLEEKV----QVVSIKDYFLEFE-----------GDPHCLRDVQKFLVECFRGKRRD  164 (200)
T ss_dssp             HHHHHTCGGGTTSEEEEEEECHHHHHHHT----TTCCGGGTCTTCC-----------SCTTCHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHhhChhhcCceEEEEeccchhhhhhc----cccHHHHhCcccc-----------CCcchHHHHHHHHHHHHHHhccC
Confidence            55555544567899999999999875411    0011111111100           011223333332211        


Q ss_pred             --cCCCeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524         283 --DWENGFVEASAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       283 --~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~  313 (592)
                        ...+-+++|||+++.||+++|+.+.+.+.+.
T Consensus       165 ~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         165 QQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             CC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence              1123366899999999999999988877543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=2e-18  Score=160.33  Aligned_cols=164  Identities=16%  Similarity=0.229  Sum_probs=103.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +|+|+|.+|||||||+|+|++...  ......++.......+...+.  .+.++|++|......                
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~d~~g~~~~~~----------------   63 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQ----------------   63 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGG----------------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeecccccccccccc--ccccccccceeeeec----------------
Confidence            699999999999999999997654  345555555555555555554  455699999721100                


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKAST  221 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~  221 (592)
                                                    ......+......++..+|+++++.|.++...... ..++..+...    
T Consensus        64 ------------------------------~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~----  108 (171)
T d1mkya1          64 ------------------------------DIISQKMKEVTLNMIREADLVLFVVDGKRGITKED-ESLADFLRKS----  108 (171)
T ss_dssp             ------------------------------GCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHHH----
T ss_pred             ------------------------------cccccccccccccccccCcEEEEeecccccccccc-cccccccccc----
Confidence                                          00001222333445788999999999887766543 4455555543    


Q ss_pred             CCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHH
Q psy1524         222 AVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQ  301 (592)
Q Consensus       222 ~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVee  301 (592)
                      ++|+|+|+||+|+..+.                                 ..+....+.+ .....++++||++|.||++
T Consensus       109 ~~pviiv~NK~Dl~~~~---------------------------------~~~~~~~~~~-~~~~~~i~iSAk~g~gid~  154 (171)
T d1mkya1         109 TVDTILVANKAENLREF---------------------------------EREVKPELYS-LGFGEPIPVSAEHNINLDT  154 (171)
T ss_dssp             TCCEEEEEESCCSHHHH---------------------------------HHHTHHHHGG-GSSCSCEECBTTTTBSHHH
T ss_pred             cccccccchhhhhhhhh---------------------------------hhHHHHHHHh-cCCCCeEEEecCCCCCHHH
Confidence            67999999999997541                                 1122223333 2344578999999999999


Q ss_pred             HHHHHHHHHHHhc
Q psy1524         302 VFKELLVQAKVKY  314 (592)
Q Consensus       302 Lf~~Li~~i~~~~  314 (592)
                      +++.|++.+.++.
T Consensus       155 L~~~i~~~l~e~~  167 (171)
T d1mkya1         155 MLETIIKKLEEKG  167 (171)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCC
Confidence            9999999886543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=3.3e-19  Score=163.04  Aligned_cols=156  Identities=21%  Similarity=0.342  Sum_probs=105.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      +||+|+|.+|||||||+|+|++...  ......++.......+..++..  +.+|||+|......            ...
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Dt~G~~~~~~------------~~~   66 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL--FRIVDTAGVRSETN------------DLV   66 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE--EEEEESSCCCSSCC------------TTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCee--EEeccccccccCCc------------cHH
Confidence            6999999999999999999997643  3444455555555566677754  55699999721100            000


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcch-hHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhc
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEF-PAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKA  219 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~  219 (592)
                                                         +.+ .......+..+|++++|+|++++.+......+.. +     
T Consensus        67 -----------------------------------~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~-~-----  105 (160)
T d1xzpa2          67 -----------------------------------ERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILER-I-----  105 (160)
T ss_dssp             -----------------------------------CCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHH-H-----
T ss_pred             -----------------------------------HHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhhhhhh-c-----
Confidence                                               111 1122234788999999999999887665443221 1     


Q ss_pred             CCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccH
Q psy1524         220 STAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNI  299 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gV  299 (592)
                       ...++++++||+|+.+.                                 ...++...  ......++++|||++|.||
T Consensus       106 -~~~~~i~~~~k~d~~~~---------------------------------~~~~~~~~--~~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2         106 -KNKRYLVVINKVDVVEK---------------------------------INEEEIKN--KLGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             -TTSSEEEEEEECSSCCC---------------------------------CCHHHHHH--HHTCSTTEEEEEGGGTCCH
T ss_pred             -ccccceeeeeeccccch---------------------------------hhhHHHHH--HhCCCCcEEEEECCCCCCH
Confidence             35789999999999764                                 11222222  1234567999999999999


Q ss_pred             HHHHHHHHHH
Q psy1524         300 TQVFKELLVQ  309 (592)
Q Consensus       300 eeLf~~Li~~  309 (592)
                      ++|++.|.++
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=9.3e-19  Score=163.94  Aligned_cols=163  Identities=17%  Similarity=0.162  Sum_probs=101.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC-CCccC-ceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFS-PKYKR-TIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~-~~~~~-Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      .|+|+|.+|||||||+|+|++.... ..... |+...+.......+.  .+++|||||.......               
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~---------------   65 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEE--RFTLADIPGIIEGASE---------------   65 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSC--EEEEEECCCCCCCGGG---------------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCC--eEEEcCCCeeecCchH---------------
Confidence            4999999999999999999976442 22223 333333333333343  4566999998211000               


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh-cC
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK-AS  220 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~-~~  220 (592)
                                                       .+.+.......+..+|++++++|+... .+..+..+...+.... ..
T Consensus        66 ---------------------------------~~~~~~~~l~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~  111 (180)
T d1udxa2          66 ---------------------------------GKGLGLEFLRHIARTRVLLYVLDAADE-PLKTLETLRKEVGAYDPAL  111 (180)
T ss_dssp             ---------------------------------SCCSCHHHHHHHTSSSEEEEEEETTSC-HHHHHHHHHHHHHHHCHHH
T ss_pred             ---------------------------------HHHHHHHHHHHHHhhhhhhhhcccccc-cccchhhhhhhhhcccccc
Confidence                                             011112223357889999999998653 2344444444333221 12


Q ss_pred             CCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHH
Q psy1524         221 TAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNIT  300 (592)
Q Consensus       221 ~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVe  300 (592)
                      .++|+|+|+||+|+.++..                                 .++...... ....+++++||++|+||+
T Consensus       112 ~~~p~iiv~NK~D~~~~~~---------------------------------~~~~~~~~~-~~~~~~~~iSA~tg~gid  157 (180)
T d1udxa2         112 LRRPSLVALNKVDLLEEEA---------------------------------VKALADALA-REGLAVLPVSALTGAGLP  157 (180)
T ss_dssp             HHSCEEEEEECCTTSCHHH---------------------------------HHHHHHHHH-TTTSCEEECCTTTCTTHH
T ss_pred             chhhhhhhhhhhhhhhHHH---------------------------------HHHHHHHHH-hcCCeEEEEEcCCCCCHH
Confidence            3579999999999976511                                 112222222 346789999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1524         301 QVFKELLVQAK  311 (592)
Q Consensus       301 eLf~~Li~~i~  311 (592)
                      +|++.|.+.+.
T Consensus       158 ~L~~~i~~~l~  168 (180)
T d1udxa2         158 ALKEALHALVR  168 (180)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988873

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=7.1e-18  Score=158.06  Aligned_cols=169  Identities=19%  Similarity=0.161  Sum_probs=105.9

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCC--CCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTF--SPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKW  138 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f--~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~  138 (592)
                      ..+||+|+|.+|||||||+|+|++...  ...+..++.......+.+++..+.  ++|++|.......      +     
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~d~~g~~~~~~~------~-----   73 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYV--FVDTAGLRRKSRV------E-----   73 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEE--ESSCSCC------------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceee--eeccCCccccccc------c-----
Confidence            469999999999999999999997654  355555655555556677886654  5999998211000      0     


Q ss_pred             CchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhh
Q psy1524         139 GLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETK  218 (592)
Q Consensus       139 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~  218 (592)
                                                      .......+......++..+|++++|+|++...... ...+...+..  
T Consensus        74 --------------------------------~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~--  118 (186)
T d1mkya2          74 --------------------------------PRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQ-DQRMAGLMER--  118 (186)
T ss_dssp             ------------------------------------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH--
T ss_pred             --------------------------------ccccccchhHHHHHHHhcCCEEEEeecccccchhh-HHHHHHHHHH--
Confidence                                            00111223334445578899999999998765433 3334444433  


Q ss_pred             cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHH-H---hhcCCCeEEEcccC
Q psy1524         219 ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESV-V---QVDWENGFVEASAK  294 (592)
Q Consensus       219 ~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~l-a---~~~~~~~~~EvSAk  294 (592)
                        .+.|+|+|+||+|+.....                               ...++.... .   ......+++++||+
T Consensus       119 --~~~~~i~v~nK~D~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~i~~vSa~  165 (186)
T d1mkya2         119 --RGRASVVVFNKWDLVVHRE-------------------------------KRYDEFTKLFREKLYFIDYSPLIFTSAD  165 (186)
T ss_dssp             --TTCEEEEEEECGGGSTTGG-------------------------------GCHHHHHHHHHHHCGGGTTSCEEECBTT
T ss_pred             --cCCceeeeccchhhhcchh-------------------------------hhhhhHHHHHHHHhcccCCCeEEEEeCC
Confidence              3689999999999875411                               111222221 1   11234579999999


Q ss_pred             CCccHHHHHHHHHHHH
Q psy1524         295 DNTNITQVFKELLVQA  310 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i  310 (592)
                      +|.||++|++.|.+.+
T Consensus       166 ~g~gv~~L~~~i~~~~  181 (186)
T d1mkya2         166 KGWNIDRMIDAMNLAY  181 (186)
T ss_dssp             TTBSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999996655

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=9.8e-18  Score=156.41  Aligned_cols=169  Identities=18%  Similarity=0.186  Sum_probs=99.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchh
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDK  142 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~  142 (592)
                      .|+|+|.+|||||||+|+|++..+. ..+..||.+...  +...+    +.|+||||.+......               
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~--~~~~~----~~ivDtpG~~~~~~~~---------------   60 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWKN----HKIIDMPGFGFMMGLP---------------   60 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEETT----EEEEECCCBSCCTTSC---------------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecccc--ccccc----ceecccCCceeccccc---------------
Confidence            6999999999999999999987654 444445555332  22333    3569999973211110               


Q ss_pred             HHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHH----------HHHHH
Q psy1524         143 VCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEI----------RLIRD  212 (592)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l----------~~~l~  212 (592)
                      ......+                         ...+.......++.+|++++|+|++........          ..+++
T Consensus        61 ~~~~~~~-------------------------~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~  115 (184)
T d2cxxa1          61 KEVQERI-------------------------KDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQ  115 (184)
T ss_dssp             HHHHHHH-------------------------HHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             ccccccc-------------------------chhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHH
Confidence            0000000                         022233334456789999999998754221111          11222


Q ss_pred             HHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh--hcCCCeEEE
Q psy1524         213 HIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ--VDWENGFVE  290 (592)
Q Consensus       213 ~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~--~~~~~~~~E  290 (592)
                      .+.+    .++|+|+|+||+|+..+.+.                              ......+.+..  ......+++
T Consensus       116 ~l~~----~~~p~iiv~NK~D~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~  161 (184)
T d2cxxa1         116 FLRE----LDIPTIVAVNKLDKIKNVQE------------------------------VINFLAEKFEVPLSEIDKVFIP  161 (184)
T ss_dssp             HHHH----TTCCEEEEEECGGGCSCHHH------------------------------HHHHHHHHHTCCGGGHHHHEEE
T ss_pred             HHHH----cCCCEEEEEeeeehhhhHHH------------------------------HHHHHHHHhcccccccCCeEEE
Confidence            2322    47899999999998754110                              00001111110  011234889


Q ss_pred             cccCCCccHHHHHHHHHHHHHH
Q psy1524         291 ASAKDNTNITQVFKELLVQAKV  312 (592)
Q Consensus       291 vSAktg~gVeeLf~~Li~~i~~  312 (592)
                      +||++|.||++|++.|++.+.+
T Consensus       162 vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         162 ISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHccC
Confidence            9999999999999999988854

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.72  E-value=2.1e-17  Score=155.36  Aligned_cols=162  Identities=14%  Similarity=0.132  Sum_probs=104.6

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee--------eeEEEEEeeCCeEEEEEEEeCCCCCCCCccccccc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE--------EMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAV  131 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~--------d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~  131 (592)
                      .+.++|+|+|.+|||||||+|+|++.........+..        +.....+..++  ..+.++|++|+           
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~-----------   69 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGH-----------   69 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSH-----------
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccc-----------
Confidence            4568999999999999999999996432211111111        11111122344  34556999998           


Q ss_pred             ccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHH
Q psy1524         132 LWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIR  211 (592)
Q Consensus       132 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l  211 (592)
                                                                  ..|.......+..+|++++|+|+++....... ..+
T Consensus        70 --------------------------------------------~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~-~~~  104 (179)
T d1wb1a4          70 --------------------------------------------ADLIRAVVSAADIIDLALIVVDAKEGPKTQTG-EHM  104 (179)
T ss_dssp             --------------------------------------------HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHH-HHH
T ss_pred             --------------------------------------------cccccchhhhhhhccccccccccccccchhhh-hhh
Confidence                                                        66777777788899999999999987654433 233


Q ss_pred             HHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhh---cCCCeE
Q psy1524         212 DHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQV---DWENGF  288 (592)
Q Consensus       212 ~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~---~~~~~~  288 (592)
                      ..+..    .++|+++|+||+|+...+...                             ...+....+.+.   ....++
T Consensus       105 ~~~~~----~~~p~iiv~NKiD~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~i  151 (179)
T d1wb1a4         105 LILDH----FNIPIIVVITKSDNAGTEEIK-----------------------------RTEMIMKSILQSTHNLKNSSI  151 (179)
T ss_dssp             HHHHH----TTCCBCEEEECTTSSCHHHHH-----------------------------HHHHHHHHHHHHSSSGGGCCE
T ss_pred             hhhhh----cCCcceeccccccccCHHHHH-----------------------------HHHHHHHHHHHHhhcCCCCeE
Confidence            33433    378999999999998652100                             001111222221   224579


Q ss_pred             EEcccCCCccHHHHHHHHHHHHHH
Q psy1524         289 VEASAKDNTNITQVFKELLVQAKV  312 (592)
Q Consensus       289 ~EvSAktg~gVeeLf~~Li~~i~~  312 (592)
                      ++|||++|+||++|++.|++.+..
T Consensus       152 v~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         152 IPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEEccCCcCHHHHHHHHHhcCCc
Confidence            999999999999999999988743

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.70  E-value=1.6e-17  Score=155.86  Aligned_cols=162  Identities=16%  Similarity=0.146  Sum_probs=100.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC-CCccCceeeeEEEEEe-eCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCch
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTIEEMHHEDFS-MNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLD  141 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt~d~~~~~v~-vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e  141 (592)
                      +|+|+|.+|||||||+|+|++.... ..+.++|.+....... .++..+  .+|||||+.....                
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~--~~~DtpG~~~~~~----------------   64 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSF--VMADLPGLIEGAH----------------   64 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEE--EEEEHHHHHHHTT----------------
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEE--EEecCCCcccCch----------------
Confidence            6999999999999999999965432 3445555433333333 355555  4599999710000                


Q ss_pred             hHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHH--HHHHHHHhh-
Q psy1524         142 KVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRL--IRDHIFETK-  218 (592)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~--~l~~L~~~~-  218 (592)
                                                     .....+... -..+..++.++++++............  +........ 
T Consensus        65 -------------------------------~~~~~~~~~-l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  112 (185)
T d1lnza2          65 -------------------------------QGVGLGHQF-LRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN  112 (185)
T ss_dssp             -------------------------------CTTTTHHHH-HHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC
T ss_pred             -------------------------------HHHHHHHHH-HHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhh
Confidence                                           000111111 223567999999998776544333222  222222211 


Q ss_pred             -cCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHh-hcCCCeEEEcccCCC
Q psy1524         219 -ASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQ-VDWENGFVEASAKDN  296 (592)
Q Consensus       219 -~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~-~~~~~~~~EvSAktg  296 (592)
                       ...++|+|+|+||+|+.+..                                   +..+.+.+ .....+++.|||++|
T Consensus       113 ~~~~~kp~ivv~NK~Dl~~~~-----------------------------------~~~~~~~~~~~~~~~v~~iSA~~g  157 (185)
T d1lnza2         113 LRLTERPQIIVANKMDMPEAA-----------------------------------ENLEAFKEKLTDDYPVFPISAVTR  157 (185)
T ss_dssp             SSTTTSCBCBEEECTTSTTHH-----------------------------------HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             hhccCCcchhhccccchHhHH-----------------------------------HHHHHHHHHhccCCcEEEEECCCC
Confidence             23468999999999997651                                   12222222 234567899999999


Q ss_pred             ccHHHHHHHHHHHH
Q psy1524         297 TNITQVFKELLVQA  310 (592)
Q Consensus       297 ~gVeeLf~~Li~~i  310 (592)
                      .||++|++.|++.+
T Consensus       158 ~Gi~~L~~~i~~~L  171 (185)
T d1lnza2         158 EGLRELLFEVANQL  171 (185)
T ss_dssp             STTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999999887

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1.4e-16  Score=152.06  Aligned_cols=118  Identities=17%  Similarity=0.194  Sum_probs=85.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCchhH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKV  143 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~  143 (592)
                      +|+|+|++|||||||+|+|+++.+...+ +|+..........++..+.+.+||++|+                       
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~d~~g~-----------------------   57 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGH-----------------------   57 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCCC-----------------------
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEeeeeeeeeeeeecccc-----------------------
Confidence            6999999999999999999998887654 4554333322223555677888999999                       


Q ss_pred             HHHHhhccCCccccccccCcchhhhccccccCcchh-HHHHHhhhcCCcEEEEEeCCCcCCH-HHHHHHHHHH-HHhh-c
Q psy1524         144 CLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFP-AMRALSISSADAFILVYAIDDPNSF-EEIRLIRDHI-FETK-A  219 (592)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~l~~~~~~~AD~iIlVyDvsd~~Sf-e~l~~~l~~L-~~~~-~  219 (592)
                                                      +.+. .++..++..+|++++|||+++..++ .....++..+ .... .
T Consensus        58 --------------------------------~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~  105 (207)
T d2fh5b1          58 --------------------------------ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMAL  105 (207)
T ss_dssp             --------------------------------HHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             --------------------------------ccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHh
Confidence                                            5554 4556778999999999999987653 4444444333 3222 2


Q ss_pred             CCCCCEEEEEeCCCCccc
Q psy1524         220 STAVPIVVVGNKSDLADE  237 (592)
Q Consensus       220 ~~~~PIILVgNK~DL~~~  237 (592)
                      ...+|++||+||+|+...
T Consensus       106 ~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1         106 KNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             TTCCEEEEEEECTTSTTC
T ss_pred             hcCCcEEEEEECcccCCC
Confidence            356899999999999753

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.67  E-value=4.1e-17  Score=158.73  Aligned_cols=190  Identities=15%  Similarity=0.216  Sum_probs=117.9

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWG  139 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~  139 (592)
                      ...+||+|+|++|||||||++||..+.+    .||++ .....+.+++  +.+++||++|+                   
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG-~~~~~~~~~~--~~~~~~D~~Gq-------------------   57 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSG-IFETKFQVDK--VNFHMFDVGGQ-------------------   57 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCS-CEEEEEEETT--EEEEEEECCCS-------------------
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCC-eEEEEEEECc--EEEEEEecCcc-------------------
Confidence            3568999999999999999999987655    36776 3344566666  66777999999                   


Q ss_pred             chhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCC----------HHHHHH
Q psy1524         140 LDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNS----------FEEIRL  209 (592)
Q Consensus       140 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~S----------fe~l~~  209 (592)
                                                          +.++..+..++.+++++++|+|+++...          +.+...
T Consensus        58 ------------------------------------~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~  101 (221)
T d1azta2          58 ------------------------------------RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN  101 (221)
T ss_dssp             ------------------------------------TTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHH
T ss_pred             ------------------------------------ceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHH
Confidence                                                7778888889999999999999986432          333333


Q ss_pred             HHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccC-CCCCCCCChHHHHHHH-----hhc
Q psy1524         210 IRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQI-SGTPDQVPYDTTESVV-----QVD  283 (592)
Q Consensus       210 ~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~r~Vs~ee~~~la-----~~~  283 (592)
                      ++..+.......++|+||++||+|+.+..-  ......+..++.+.......... ...........+..+.     +..
T Consensus       102 ~~~~il~~~~~~~~~iil~~NK~Dl~~~k~--~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~  179 (221)
T d1azta2         102 LFKSIWNNRWLRTISVILFLNKQDLLAEKV--LAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRIS  179 (221)
T ss_dssp             HHHHHHTCGGGSSCEEEEEEECHHHHHHHH--HHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcChhhCCCcEEEEechhhhhhhhh--ccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHh
Confidence            444444443446899999999999976521  11111111111111100000000 0000111122222221     110


Q ss_pred             -------CCCeEEEcccCCCccHHHHHHHHHHHHHHh
Q psy1524         284 -------WENGFVEASAKDNTNITQVFKELLVQAKVK  313 (592)
Q Consensus       284 -------~~~~~~EvSAktg~gVeeLf~~Li~~i~~~  313 (592)
                             ..+-+.++||+++.||+.+|..+.+.|...
T Consensus       180 ~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         180 TASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             TSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             ccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence                   112256899999999999999987777544

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.66  E-value=2e-16  Score=149.60  Aligned_cols=166  Identities=13%  Similarity=0.183  Sum_probs=94.2

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCC---CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFS---PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~---~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ...+|+|+|.+|||||||+|+|++....   .....++.+....  .+. .  .+.+.|+++.......           
T Consensus        22 ~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~--~~~-~--~~~~~d~~~~~~~~~~-----------   85 (195)
T d1svia_          22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--IIN-D--ELHFVDVPGYGFAKVS-----------   85 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE--EET-T--TEEEEECCCBCCCSSC-----------
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccc--ccc-c--cceEEEEEeecccccc-----------
Confidence            3458999999999999999999976432   2222222222221  222 1  2334777776211000           


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhH---HHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPA---MRALSISSADAFILVYAIDDPNSFEEIRLIRDHI  214 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L  214 (592)
                        ...                                .+....   .....+..+|++++|+|++++..-.. ..++..+
T Consensus        86 --~~~--------------------------------~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~-~~~~~~l  130 (195)
T d1svia_          86 --KSE--------------------------------REAWGRMIETYITTREELKAVVQIVDLRHAPSNDD-VQMYEFL  130 (195)
T ss_dssp             --HHH--------------------------------HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHH
T ss_pred             --ccc--------------------------------cchhhhHHhhhhccccchhhhhhhhhccccccccc-ccccccc
Confidence              000                                011111   22223456799999999987654322 3344445


Q ss_pred             HHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccC
Q psy1524         215 FETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAK  294 (592)
Q Consensus       215 ~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAk  294 (592)
                      ..    .++|+++|+||+|+......                             ....+...+.........++.+||+
T Consensus       131 ~~----~~~piivv~NK~D~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~~~~~SA~  177 (195)
T d1svia_         131 KY----YGIPVIVIATKADKIPKGKW-----------------------------DKHAKVVRQTLNIDPEDELILFSSE  177 (195)
T ss_dssp             HH----TTCCEEEEEECGGGSCGGGH-----------------------------HHHHHHHHHHHTCCTTSEEEECCTT
T ss_pred             cc----ccCcceechhhccccCHHHH-----------------------------HHHHHHHHHHhcccCCCCEEEEeCC
Confidence            44    36899999999998654110                             0001112222222455679999999


Q ss_pred             CCccHHHHHHHHHHHH
Q psy1524         295 DNTNITQVFKELLVQA  310 (592)
Q Consensus       295 tg~gVeeLf~~Li~~i  310 (592)
                      +|+||+++++.|.+.+
T Consensus       178 ~~~gi~el~~~i~~~l  193 (195)
T d1svia_         178 TKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998876

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.61  E-value=9.2e-16  Score=149.73  Aligned_cols=114  Identities=21%  Similarity=0.251  Sum_probs=71.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccCcee-eeEEEEE----------------eeCCeEEEEEEEeCCCCCCCCcc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIE-EMHHEDF----------------SMNGVHLKLDILDTSGEQSGKGL  126 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~-d~~~~~v----------------~vdg~~v~L~I~DT~G~~~~~~~  126 (592)
                      .|+|+|.+|+|||||+|+|++.........++. ......+                .++.....+.|+||||+      
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh------   80 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH------   80 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT------
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccce------
Confidence            499999999999999999986432211111111 1001111                12222345667999998      


Q ss_pred             cccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHH
Q psy1524         127 KCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEE  206 (592)
Q Consensus       127 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~  206 (592)
                                                                       +.|.......+..+|++|+|+|+.+.-.-..
T Consensus        81 -------------------------------------------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~  111 (227)
T d1g7sa4          81 -------------------------------------------------EAFTTLRKRGGALADLAILIVDINEGFKPQT  111 (227)
T ss_dssp             -------------------------------------------------SCCTTSBCSSSBSCSEEEEEEETTTCCCHHH
T ss_pred             -------------------------------------------------ecccccchhcccccceEEEEEecccCcccch
Confidence                                                             3333333334677999999999987655443


Q ss_pred             HHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         207 IRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       207 l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                       ...+..+..    .++|+|+|+||+|+...
T Consensus       112 -~~~~~~~~~----~~~p~iivlNK~D~~~~  137 (227)
T d1g7sa4         112 -QEALNILRM----YRTPFVVAANKIDRIHG  137 (227)
T ss_dssp             -HHHHHHHHH----TTCCEEEEEECGGGSTT
T ss_pred             -hHHHHHhhc----CCCeEEEEEECccCCCc
Confidence             334444444    37899999999999876

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=4.4e-15  Score=137.44  Aligned_cols=166  Identities=17%  Similarity=0.170  Sum_probs=102.1

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      .+.-.|+|+|.+|||||||+|+|++..+.  .....|+..........+...+.+  +|++|...               
T Consensus         3 ~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--~~~~~~~~---------------   65 (179)
T d1egaa1           3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIY--VDTPGLHM---------------   65 (179)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEE--ESSSSCCH---------------
T ss_pred             ccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEe--ecCCCcee---------------
Confidence            35567999999999999999999977543  333344445555555556655444  88888710               


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHh
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFET  217 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~  217 (592)
                        ........                             ............+|+++++.|.++..  .....+...+.+ 
T Consensus        66 --~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~~~~~~~l~~-  111 (179)
T d1egaa1          66 --EEKRAINR-----------------------------LMNKAASSSIGDVELVIFVVEGTRWT--PDDEMVLNKLRE-  111 (179)
T ss_dssp             --HHHHHHHH-----------------------------HHTCCTTSCCCCEEEEEEEEETTCCC--HHHHHHHHHHHS-
T ss_pred             --cchhhhhh-----------------------------hhhhccccchhhcceeEEEEecCccc--hhHHHHHHHhhh-
Confidence              00000000                             00000111234577888888876433  333334444433 


Q ss_pred             hcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCc
Q psy1524         218 KASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNT  297 (592)
Q Consensus       218 ~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~  297 (592)
                         ...|+++|+||+|+.....                               ......+.+.......+++++||++|.
T Consensus       112 ---~~~~~i~v~~k~d~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~vSA~~g~  157 (179)
T d1egaa1         112 ---GKAPVILAVNKVDNVQEKA-------------------------------DLLPHLQFLASQMNFLDIVPISAETGL  157 (179)
T ss_dssp             ---SSSCEEEEEESTTTCCCHH-------------------------------HHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred             ---ccCceeeeeeeeeccchhh-------------------------------hhhhHhhhhhhhcCCCCEEEEeCcCCC
Confidence               4678999999999876521                               112333444444455689999999999


Q ss_pred             cHHHHHHHHHHHH
Q psy1524         298 NITQVFKELLVQA  310 (592)
Q Consensus       298 gVeeLf~~Li~~i  310 (592)
                      ||++|++.+++.+
T Consensus       158 gi~~L~~~i~~~l  170 (179)
T d1egaa1         158 NVDTIAAIVRKHL  170 (179)
T ss_dssp             THHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999987765

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.59  E-value=6.4e-15  Score=139.96  Aligned_cols=164  Identities=15%  Similarity=0.157  Sum_probs=104.2

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC---C-CccCceee--eEEEEEe-------------------eCCeEEEEEE
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS---P-KYKRTIEE--MHHEDFS-------------------MNGVHLKLDI  114 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~---~-~~~~Tt~d--~~~~~v~-------------------vdg~~v~L~I  114 (592)
                      ...++|+++|..++|||||+++|++....   . .....+.+  +......                   .......+.|
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            45789999999999999999999864221   0 00011111  1110000                   0112345778


Q ss_pred             EeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEE
Q psy1524         115 LDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFIL  194 (592)
Q Consensus       115 ~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIl  194 (592)
                      +||||+                                                       +.|.......+..+|++++
T Consensus        83 iDtPGh-------------------------------------------------------~~f~~~~~~~~~~~d~~il  107 (195)
T d1kk1a3          83 IDAPGH-------------------------------------------------------EALMTTMLAGASLMDGAIL  107 (195)
T ss_dssp             EECSSH-------------------------------------------------------HHHHHHHHHCGGGCSEEEE
T ss_pred             eccchh-------------------------------------------------------hhhhHHhhccccccccccc
Confidence            999999                                                       6777777777888999999


Q ss_pred             EEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChH
Q psy1524         195 VYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYD  274 (592)
Q Consensus       195 VyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~e  274 (592)
                      |+|+.+..........+..+...   ...++|+|.||+|+.+.....                             ...+
T Consensus       108 vvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~-----------------------------~~~~  155 (195)
T d1kk1a3         108 VIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKAL-----------------------------ENYR  155 (195)
T ss_dssp             EEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHH-----------------------------HHHH
T ss_pred             ccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHH-----------------------------HHHH
Confidence            99998864333334444444333   235689999999998652110                             0112


Q ss_pred             HHHHHHhhc--CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         275 TTESVVQVD--WENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       275 e~~~la~~~--~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                      ....+....  ..++++++||++|+||++|++.+.+.+
T Consensus       156 ~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         156 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            223333221  245799999999999999999887654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.54  E-value=9.7e-15  Score=139.98  Aligned_cols=103  Identities=17%  Similarity=0.131  Sum_probs=67.2

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCC
Q psy1524         176 NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGL  255 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~  255 (592)
                      ..|.......+..||++|+|+|+.+.-.-......+..+...   ...|+||+.||+|+.+.....              
T Consensus        97 ~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~--------------  159 (205)
T d2qn6a3          97 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEAL--------------  159 (205)
T ss_dssp             HHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHH--------------
T ss_pred             HHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHH--------------
Confidence            677766666778899999999998763222333333333332   235899999999998652110              


Q ss_pred             CCccccccCCCCCCCCChHHHHHHHhhc--CCCeEEEcccCCCccHHHHHHHHHHHH
Q psy1524         256 PDSVCAHQISGTPDQVPYDTTESVVQVD--WENGFVEASAKDNTNITQVFKELLVQA  310 (592)
Q Consensus       256 ~~~~~~~~~~~~~r~Vs~ee~~~la~~~--~~~~~~EvSAktg~gVeeLf~~Li~~i  310 (592)
                                     ....+...+....  ...+++++||++|.||++|++.|...+
T Consensus       160 ---------------~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         160 ---------------SQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             ---------------HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             ---------------HHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence                           0012222222221  246799999999999999999887754

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=3e-14  Score=134.84  Aligned_cols=117  Identities=15%  Similarity=0.283  Sum_probs=81.6

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCCCCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCCcCc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFSPKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKKWGL  140 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~  140 (592)
                      +..+|+|+|++|||||||+|+|+++.+.+.   |+.+.....+..++..  +.+|||+|+                    
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~---tt~~~~~~~~~~~~~~--~~l~D~~g~--------------------   56 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAADYDGSG--VTLVDFPGH--------------------   56 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEETTGGGSS--CEEEECCCC--------------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCe---EEecceEEEEEeCCeE--EEEEecccc--------------------
Confidence            346999999999999999999998876532   3334444445555554  456999998                    


Q ss_pred             hhHHHHHhhccCCccccccccCcchhhhccccccCcchhHH----HHHhhhcCCcEEEEEeCC-CcCCHHHHHHHHHHHH
Q psy1524         141 DKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAM----RALSISSADAFILVYAID-DPNSFEEIRLIRDHIF  215 (592)
Q Consensus       141 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l----~~~~~~~AD~iIlVyDvs-d~~Sfe~l~~~l~~L~  215 (592)
                                                         +.+...    .......++.+++++|++ +..+++.+..|+..+.
T Consensus        57 -----------------------------------~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~  101 (209)
T d1nrjb_          57 -----------------------------------VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDIL  101 (209)
T ss_dssp             -----------------------------------GGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHH
T ss_pred             -----------------------------------cchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHH
Confidence                                               222222    233455678999999976 4677777777654432


Q ss_pred             ---HhhcCCCCCEEEEEeCCCCccc
Q psy1524         216 ---ETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       216 ---~~~~~~~~PIILVgNK~DL~~~  237 (592)
                         +.....++|+++|+||+|+...
T Consensus       102 ~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_         102 SITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             HHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             HHHHHHHhccCCeEEEEEeeccccc
Confidence               2224578999999999998764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=9.5e-14  Score=128.11  Aligned_cols=30  Identities=27%  Similarity=0.304  Sum_probs=24.9

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLYNTFS   88 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~~~f~   88 (592)
                      .+..++|+|+|.+|||||||+|+|++....
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~   42 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSL   42 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC---
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCce
Confidence            467899999999999999999999977553

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.43  E-value=2.3e-13  Score=130.11  Aligned_cols=161  Identities=17%  Similarity=0.142  Sum_probs=101.5

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcC-------CC---------CCCccCce-eeeEEEEEeeCCeEEEEEEEeCCCCCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYN-------TF---------SPKYKRTI-EEMHHEDFSMNGVHLKLDILDTSGEQSG  123 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~-------~f---------~~~~~~Tt-~d~~~~~v~vdg~~v~L~I~DT~G~~~~  123 (592)
                      +.++|+++|-.++|||||+++|+..       .+         .......+ -+.....+...+  ..++++||||+   
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~--~~~~~iDtPGh---   76 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA--RHYAHTDCPGH---   76 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS--CEEEEEECSSH---
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEece--eeEEeecCcch---
Confidence            4589999999999999999999741       11         11111111 122223333344  45566999999   


Q ss_pred             CcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCC
Q psy1524         124 KGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNS  203 (592)
Q Consensus       124 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~S  203 (592)
                                                                          ..|.......+..+|++|+|+|+.+...
T Consensus        77 ----------------------------------------------------~~f~~~~~~~~~~aD~allVVda~~G~~  104 (196)
T d1d2ea3          77 ----------------------------------------------------ADYVKNMITGTAPLDGCILVVAANDGPM  104 (196)
T ss_dssp             ----------------------------------------------------HHHHHHHHHTSSCCSEEEEEEETTTCSC
T ss_pred             ----------------------------------------------------HHHHHHHHHHHhhcCeEEEEEEcCCCCc
Confidence                                                                6676666667888999999999998654


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCCCCCCCCChHHHHHHHhhc
Q psy1524         204 FEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQISGTPDQVPYDTTESVVQVD  283 (592)
Q Consensus       204 fe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~Vs~ee~~~la~~~  283 (592)
                      - .-...+..+...   ...|+|++.||+|+..++...                           ..+ ..+...+....
T Consensus       105 ~-QT~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~---------------------------~~i-~~~i~~~l~~~  152 (196)
T d1d2ea3         105 P-QTREHLLLARQI---GVEHVVVYVNKADAVQDSEMV---------------------------ELV-ELEIRELLTEF  152 (196)
T ss_dssp             H-HHHHHHHHHHHT---TCCCEEEEEECGGGCSCHHHH---------------------------HHH-HHHHHHHHHHT
T ss_pred             h-hHHHHHHHHHHh---cCCcEEEEEecccccccHHHH---------------------------HHH-HHHHHHHHHHh
Confidence            3 233334434332   346899999999987542110                           000 11222222211


Q ss_pred             ----CCCeEEEcccCCC----------ccHHHHHHHHHHHH
Q psy1524         284 ----WENGFVEASAKDN----------TNITQVFKELLVQA  310 (592)
Q Consensus       284 ----~~~~~~EvSAktg----------~gVeeLf~~Li~~i  310 (592)
                          ...+++.+||++|          +|+.+|++.+.+.+
T Consensus       153 ~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         153 GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             CCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence                2367999999998          58999998876643

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.35  E-value=1.7e-12  Score=124.58  Aligned_cols=115  Identities=20%  Similarity=0.235  Sum_probs=79.7

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcC--------CCCC----Cc------cCceeeeEEEEEeeCCeEEEEEEEeCCCCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYN--------TFSP----KY------KRTIEEMHHEDFSMNGVHLKLDILDTSGEQS  122 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~--------~f~~----~~------~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~  122 (592)
                      +.++|+++|..++|||||+++|+..        .+..    ++      ...+-+.....+..++..+  +|+||||+  
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i--~iiDtPGh--   77 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHY--SHVDCPGH--   77 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEE--EEEECCCS--
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEE--EEEeCCCc--
Confidence            4589999999999999999999721        1110    00      0222244445566677555  55999999  


Q ss_pred             CCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcC
Q psy1524         123 GKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPN  202 (592)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~  202 (592)
                                                                           ..|.......+..||++|+|+|+++..
T Consensus        78 -----------------------------------------------------~df~~~~~~~~~~aD~avlVvda~~Gv  104 (204)
T d2c78a3          78 -----------------------------------------------------ADYIKNMITGAAQMDGAILVVSAADGP  104 (204)
T ss_dssp             -----------------------------------------------------GGGHHHHHHHHTTCSSEEEEEETTTCC
T ss_pred             -----------------------------------------------------hhhHHHHHHHHHHCCEEEEEEECCCCC
Confidence                                                                 667776677788999999999999877


Q ss_pred             CHHHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCccc
Q psy1524         203 SFEEIRLIRDHIFETKASTAVP-IVVVGNKSDLADE  237 (592)
Q Consensus       203 Sfe~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~~  237 (592)
                      .....+ .+..+...    ++| +|++.||+|+.+.
T Consensus       105 ~~qt~~-~~~~~~~~----gi~~iiv~iNK~D~~~~  135 (204)
T d2c78a3         105 MPQTRE-HILLARQV----GVPYIVVFMNKVDMVDD  135 (204)
T ss_dssp             CHHHHH-HHHHHHHT----TCCCEEEEEECGGGCCC
T ss_pred             cHHHHH-HHHHHHHc----CCCeEEEEEEecccCCC
Confidence            654433 33334332    555 7888999998754

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.30  E-value=2e-11  Score=118.53  Aligned_cols=57  Identities=19%  Similarity=0.049  Sum_probs=39.6

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCC-CEEEEEeCCCCccc
Q psy1524         176 NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAV-PIVVVGNKSDLADE  237 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~-PIILVgNK~DL~~~  237 (592)
                      +.|..........+|++|+|+|+.+...-... ..+..+..    .++ .+|++.||+|+.+.
T Consensus       100 ~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~-e~~~~~~~----~gv~~iiv~vNK~D~~~~  157 (222)
T d1zunb3         100 EQYTRNMATGASTCDLAIILVDARYGVQTQTR-RHSYIASL----LGIKHIVVAINKMDLNGF  157 (222)
T ss_dssp             GGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCEEEEEEECTTTTTS
T ss_pred             hhhhhhhccccccCceEEEEeccccCcccchH-HHHHHHHH----cCCCEEEEEEEccccccc
Confidence            77777777778899999999999876543322 22222222    244 48999999999864

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.17  E-value=2.1e-10  Score=114.65  Aligned_cols=113  Identities=16%  Similarity=0.212  Sum_probs=76.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC--CCCC----CccCceee-------------eEEEEEeeCCeEEEEEEEeCCCCCCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN--TFSP----KYKRTIEE-------------MHHEDFSMNGVHLKLDILDTSGEQSG  123 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~--~f~~----~~~~Tt~d-------------~~~~~v~vdg~~v~L~I~DT~G~~~~  123 (592)
                      -+|+|+|..++|||||+.+++..  ....    ....|+.|             .....+..++  ..++|+||||+   
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~---   81 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGH---   81 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSS---
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCch---
Confidence            37999999999999999999732  1110    00011111             1123344455  45666999999   


Q ss_pred             CcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCC
Q psy1524         124 KGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNS  203 (592)
Q Consensus       124 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~S  203 (592)
                                                                          ..|.......+.-+|++|+|+|+.+.-.
T Consensus        82 ----------------------------------------------------~dF~~e~~~~l~~~D~avlVvda~~Gv~  109 (276)
T d2bv3a2          82 ----------------------------------------------------VDFTIEVERSMRVLDGAIVVFDSSQGVE  109 (276)
T ss_dssp             ----------------------------------------------------SSCSTTHHHHHHHCCEEEEEEETTTSSC
T ss_pred             ----------------------------------------------------hhhHHHHHHHHHhhhheEEeccccCCcc
Confidence                                                                5566666667888999999999998866


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         204 FEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       204 fe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      -.....| ..+.+    .++|+|++.||+|....
T Consensus       110 ~~T~~~w-~~a~~----~~lP~i~fINKmDr~~a  138 (276)
T d2bv3a2         110 PQSETVW-RQAEK----YKVPRIAFANKMDKTGA  138 (276)
T ss_dssp             HHHHHHH-HHHHT----TTCCEEEEEECTTSTTC
T ss_pred             hhHHHHH-HHHHH----cCCCEEEEEeccccccc
Confidence            5444433 43433    48999999999999764

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.12  E-value=5.2e-10  Score=111.35  Aligned_cols=110  Identities=20%  Similarity=0.253  Sum_probs=77.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC--CCCC-----------C------ccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN--TFSP-----------K------YKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGK  124 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~--~f~~-----------~------~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~  124 (592)
                      +|+|+|..++|||||+.+|+..  ....           +      ....+-......+..++.  .++|+||||+    
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~--~~n~iDtPGh----   77 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGH--RVFLLDAPGY----   77 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTE--EEEEEECCCS----
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeeccccccccc--ceeEEccCch----
Confidence            6999999999999999999722  1110           0      001111223344555664  4566999999    


Q ss_pred             cccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCH
Q psy1524         125 GLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSF  204 (592)
Q Consensus       125 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sf  204 (592)
                                                                         ..|.......++-+|++|+|+|+.+.-.-
T Consensus        78 ---------------------------------------------------~dF~~e~~~al~~~D~avlvvda~~Gv~~  106 (267)
T d2dy1a2          78 ---------------------------------------------------GDFVGEIRGALEAADAALVAVSAEAGVQV  106 (267)
T ss_dssp             ---------------------------------------------------GGGHHHHHHHHHHCSEEEEEEETTTCSCH
T ss_pred             ---------------------------------------------------hhhhhhhhhhhcccCceEEEeeccCCccc
Confidence                                                               67777777789999999999999988765


Q ss_pred             HHHHHHHHHHHHhhcCCCCCEEEEEeCCCCc
Q psy1524         205 EEIRLIRDHIFETKASTAVPIVVVGNKSDLA  235 (592)
Q Consensus       205 e~l~~~l~~L~~~~~~~~~PIILVgNK~DL~  235 (592)
                      .....| ..+.+    .++|++++.||+|..
T Consensus       107 ~t~~~~-~~~~~----~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2         107 GTERAW-TVAER----LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHH-HHHHH----TTCCEEEEEECGGGC
T ss_pred             hhHHHH-Hhhhh----ccccccccccccccc
Confidence            554444 33433    378999999999974

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.12  E-value=2.5e-10  Score=112.88  Aligned_cols=128  Identities=17%  Similarity=0.153  Sum_probs=81.2

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWGPKK  137 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~~~~  137 (592)
                      ...++|+|+|.+|||||||+|.+++....  ....++|.+........++..+.  |+||||..++....          
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~--viDTPGl~~~~~~~----------   97 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLN--IIDTPGLIEGGYIN----------   97 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEE--EEECCCSEETTEEC----------
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEE--EEeeecccCCcchH----------
Confidence            45799999999999999999999977533  44556777666677778886654  59999983211100          


Q ss_pred             cCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHH--hhhcCCcEEEEEeCCCcCCHHHHHHHHHHHH
Q psy1524         138 WGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRAL--SISSADAFILVYAIDDPNSFEEIRLIRDHIF  215 (592)
Q Consensus       138 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~--~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~  215 (592)
                                                            +........  .....|++++|+++++..--......+..+.
T Consensus        98 --------------------------------------~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~  139 (257)
T d1h65a_          98 --------------------------------------DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAIT  139 (257)
T ss_dssp             --------------------------------------HHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHH
T ss_pred             --------------------------------------HHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHH
Confidence                                                  111111111  1345789999999876432122233344444


Q ss_pred             HhhcC-CCCCEEEEEeCCCCccc
Q psy1524         216 ETKAS-TAVPIVVVGNKSDLADE  237 (592)
Q Consensus       216 ~~~~~-~~~PIILVgNK~DL~~~  237 (592)
                      ...+. --.++|+|.||+|+..+
T Consensus       140 ~~fg~~~~~~~ivv~t~~D~~~~  162 (257)
T d1h65a_         140 DSFGKGIWNKAIVALTHAQFSPP  162 (257)
T ss_dssp             HHHCGGGGGGEEEEEECCSCCCG
T ss_pred             HHcchhhhhCEEEEEECcccCCc
Confidence            43211 12479999999998765

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=3.7e-10  Score=118.61  Aligned_cols=117  Identities=21%  Similarity=0.114  Sum_probs=68.2

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCC------CCccCceeeeEEEEEeeCCeEEEEEEEeCCCCCCCCcccccccccC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFS------PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGEQSGKGLKCGAVLWG  134 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~------~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~~~~~~~~~~~~~~~  134 (592)
                      ..++|+|+|.+|||||||+|+|++....      ....+||.+..... ..++..+  .||||||.+.....        
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~-~~~~~~~--~l~DtPG~~~~~~~--------  123 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNV--VFWDLPGIGSTNFP--------  123 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTE--EEEECCCGGGSSCC--------
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeee-ccCCCeE--EEEeCCCccccccc--------
Confidence            3589999999999999999999974332      12223444333222 1233334  45999998221000        


Q ss_pred             CCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHH
Q psy1524         135 PKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHI  214 (592)
Q Consensus       135 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L  214 (592)
                           .                                   +++  +....+..+|++|++.|..  -+-.++ .++..+
T Consensus       124 -----~-----------------------------------~~~--~~~~~~~~~d~~l~~~~~~--~~~~d~-~l~~~l  158 (400)
T d1tq4a_         124 -----P-----------------------------------DTY--LEKMKFYEYDFFIIISATR--FKKNDI-DIAKAI  158 (400)
T ss_dssp             -----H-----------------------------------HHH--HHHTTGGGCSEEEEEESSC--CCHHHH-HHHHHH
T ss_pred             -----H-----------------------------------HHH--HHHhhhhcceEEEEecCCC--CCHHHH-HHHHHH
Confidence                 0                                   111  2222356788888887643  332332 344455


Q ss_pred             HHhhcCCCCCEEEEEeCCCCccc
Q psy1524         215 FETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       215 ~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      .+    .++|+++|.||+|....
T Consensus       159 ~~----~~k~~~~V~nK~D~~~~  177 (400)
T d1tq4a_         159 SM----MKKEFYFVRTKVDSDIT  177 (400)
T ss_dssp             HH----TTCEEEEEECCHHHHHH
T ss_pred             HH----cCCCEEEEEeCcccccc
Confidence            44    36899999999997543

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.04  E-value=1.1e-10  Score=114.85  Aligned_cols=59  Identities=22%  Similarity=0.091  Sum_probs=29.9

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCCCcC---CH---HHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         176 NEFPAMRALSISSADAFILVYAIDDPN---SF---EEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvsd~~---Sf---e~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      ..|.........-+|++|+|+|+.+..   ++   ......+..+...   .-.++|++.||+|+...
T Consensus       113 ~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNKmD~~~~  177 (245)
T d1r5ba3         113 KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHLVVVINKMDEPSV  177 (245)
T ss_dssp             ----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEECTTSTTC
T ss_pred             ccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CCCeEEEEEEcCCCCcc
Confidence            555555555677899999999998642   00   0122222222222   22358899999998743

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.97  E-value=4.1e-10  Score=108.90  Aligned_cols=59  Identities=25%  Similarity=0.156  Sum_probs=39.1

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCCCcCC------HHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         176 NEFPAMRALSISSADAFILVYAIDDPNS------FEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvsd~~S------fe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      +.|.......+.-+|++|+|+|+.+...      .......+..+ ..  ....++|++.||+|+...
T Consensus        92 ~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~-~~--~~~~~iIv~iNK~D~~~~  156 (224)
T d1jnya3          92 RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILA-KT--MGLDQLIVAVNKMDLTEP  156 (224)
T ss_dssp             TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHH-HH--TTCTTCEEEEECGGGSSS
T ss_pred             HHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHH-HH--hCCCceEEEEEcccCCCc
Confidence            7788888888889999999999987521      11122222212 11  234578999999998753

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=8.3e-10  Score=108.10  Aligned_cols=116  Identities=22%  Similarity=0.236  Sum_probs=74.2

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc--CCCCC------------------------------CccCceeeeEEEEEeeCCe
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY--NTFSP------------------------------KYKRTIEEMHHEDFSMNGV  108 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~--~~f~~------------------------------~~~~Tt~d~~~~~v~vdg~  108 (592)
                      ..++|+++|-.++|||||+.+|+.  +.+.+                              ....-+-+.....+..++ 
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~-   83 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-   83 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS-
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC-
Confidence            358999999999999999999962  11110                              001111123334445555 


Q ss_pred             EEEEEEEeCCCCCCCCcccccccccCCCCcCchhHHHHHhhccCCccccccccCcchhhhccccccCcchhHHHHHhhhc
Q psy1524         109 HLKLDILDTSGEQSGKGLKCGAVLWGPKKWGLDKVCLRRALNQRPMAYKTDVQLPSKLTSLAMTCSTNEFPAMRALSISS  188 (592)
Q Consensus       109 ~v~L~I~DT~G~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~  188 (592)
                       ..++|+||||+                                                       ..|.......+..
T Consensus        84 -~~i~iiDtPGH-------------------------------------------------------~df~~~~~~g~~~  107 (239)
T d1f60a3          84 -YQVTVIDAPGH-------------------------------------------------------RDFIKNMITGTSQ  107 (239)
T ss_dssp             -EEEEEEECCCC-------------------------------------------------------TTHHHHHHHSSSC
T ss_pred             -EEEEEEECCCc-------------------------------------------------------HHHHHHHHHHHHH
Confidence             45666999999                                                       6777766677888


Q ss_pred             CCcEEEEEeCCCcCC------HHHHHHHHHHHHHhhcCCCCC-EEEEEeCCCCccc
Q psy1524         189 ADAFILVYAIDDPNS------FEEIRLIRDHIFETKASTAVP-IVVVGNKSDLADE  237 (592)
Q Consensus       189 AD~iIlVyDvsd~~S------fe~l~~~l~~L~~~~~~~~~P-IILVgNK~DL~~~  237 (592)
                      +|++|+|+|+++...      .......+..+...    ++| +|++.||+|+.+.
T Consensus       108 ~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~----gv~~iiv~iNKmD~~~~  159 (239)
T d1f60a3         108 ADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL----GVRQLIVAVNKMDSVKW  159 (239)
T ss_dssp             CSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT----TCCEEEEEEECGGGGTT
T ss_pred             hCEEEEEEECCCCccccccCchHhHHHHHHHHHHc----CCCeEEEEEECCCCCCC
Confidence            999999999975420      01122222222222    454 8899999998764

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.90  E-value=5.2e-10  Score=107.23  Aligned_cols=27  Identities=11%  Similarity=-0.135  Sum_probs=23.1

Q ss_pred             cCCCeEEEcccCCCccHHHHHHHHHHH
Q psy1524         283 DWENGFVEASAKDNTNITQVFKELLVQ  309 (592)
Q Consensus       283 ~~~~~~~EvSAktg~gVeeLf~~Li~~  309 (592)
                      ....+++++||++|+|+++|+..|.+.
T Consensus       214 ~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         214 LPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             SCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            356789999999999999999887764

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.86  E-value=7.5e-09  Score=106.21  Aligned_cols=57  Identities=19%  Similarity=0.183  Sum_probs=43.9

Q ss_pred             cchhHHHHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCccc
Q psy1524         176 NEFPAMRALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADE  237 (592)
Q Consensus       176 e~~~~l~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~  237 (592)
                      ..|.......++-+|++|+|+|+.+.-.......|...+ +    .++|+|+|.||+|....
T Consensus       107 ~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~-~----~~~p~i~viNKiDr~~~  163 (341)
T d1n0ua2         107 VDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRALL  163 (341)
T ss_dssp             CSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHH-H----cCCCeEEEEECcccccc
Confidence            667777777788999999999999987766555444432 2    37899999999997654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=7.7e-09  Score=105.64  Aligned_cols=90  Identities=17%  Similarity=0.286  Sum_probs=52.8

Q ss_pred             hhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccC
Q psy1524         185 SISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQI  264 (592)
Q Consensus       185 ~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  264 (592)
                      +...+|.+++|.+....+   +++....-+.+.      +-++|.||+|+......                        
T Consensus       164 i~~~aD~~l~v~~P~~Gd---~iq~~k~gi~e~------aDi~VvNKaD~~~~~~~------------------------  210 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGD---DLQGIKKGLMEV------ADLIVINKDDGDNHTNV------------------------  210 (327)
T ss_dssp             HHTTCSEEEEEECC---------CCCCHHHHHH------CSEEEECCCCTTCHHHH------------------------
T ss_pred             hhhccceEEEEecCCCch---hhhhhchhhhcc------ccEEEEEeecccchHHH------------------------
Confidence            356799999998765444   333322333333      33788999998764110                        


Q ss_pred             CCCCCCCChHHHHHHH------hhcCCCeEEEcccCCCccHHHHHHHHHHHHHH
Q psy1524         265 SGTPDQVPYDTTESVV------QVDWENGFVEASAKDNTNITQVFKELLVQAKV  312 (592)
Q Consensus       265 ~~~~r~Vs~ee~~~la------~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~  312 (592)
                           .....+.....      ...|..+++.|||++|.||+++++.|.+....
T Consensus       211 -----~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~  259 (327)
T d2p67a1         211 -----AIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA  259 (327)
T ss_dssp             -----HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHH
Confidence                 00011111111      12455679999999999999999999876644

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.68  E-value=3.8e-08  Score=97.77  Aligned_cols=59  Identities=20%  Similarity=0.302  Sum_probs=40.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCceeeeEEEEEeeCC------------eE---EEEEEEeCCCC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIEEMHHEDFSMNG------------VH---LKLDILDTSGE  120 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~d~~~~~v~vdg------------~~---v~L~I~DT~G~  120 (592)
                      .+||.|||.||||||||+|++++... ..+|+.||.+.....+.+..            ..   ..++|+|+||.
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GL   76 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGL   76 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSC
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEcccc
Confidence            47999999999999999999997654 36777777654444454432            22   24778999998

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.62  E-value=1.9e-08  Score=102.51  Aligned_cols=94  Identities=15%  Similarity=0.250  Sum_probs=54.5

Q ss_pred             hhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccCC
Q psy1524         186 ISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQIS  265 (592)
Q Consensus       186 ~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  265 (592)
                      ..-+|.+++|......+....++   .-+.+      +.=|+|.||+|+.+.....                        
T Consensus       162 ~~~~D~~v~v~~p~~GD~iQ~~k---~gilE------~aDi~vvNKaD~~~~~~~~------------------------  208 (323)
T d2qm8a1         162 ADLTDFFLVLMLPGAGDELQGIK---KGIFE------LADMIAVNKADDGDGERRA------------------------  208 (323)
T ss_dssp             HTTSSEEEEEECSCC------CC---TTHHH------HCSEEEEECCSTTCCHHHH------------------------
T ss_pred             hcccceEEEEeeccchhhhhhhh---hhHhh------hhheeeEeccccccchHHH------------------------
Confidence            45599999999987665433222   22222      2448999999987552100                        


Q ss_pred             CCCCCCChHHHHHHH------hhcCCCeEEEcccCCCccHHHHHHHHHHHHHHhccc
Q psy1524         266 GTPDQVPYDTTESVV------QVDWENGFVEASAKDNTNITQVFKELLVQAKVKYNL  316 (592)
Q Consensus       266 ~~~r~Vs~ee~~~la------~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~~~~~  316 (592)
                         +.+ ..+.....      ...+..+++.|||++|.||+++++.|.+........
T Consensus       209 ---~~~-~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~~~~  261 (323)
T d2qm8a1         209 ---SAA-ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTAT  261 (323)
T ss_dssp             ---HHH-HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHT
T ss_pred             ---HHH-HHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHC
Confidence               000 00001110      113566799999999999999999998776544333

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.59  E-value=1.9e-07  Score=92.73  Aligned_cols=36  Identities=25%  Similarity=0.421  Sum_probs=28.9

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCC-CCCccCcee
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTF-SPKYKRTIE   96 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f-~~~~~~Tt~   96 (592)
                      ...+|+|+|..++|||||||+|++..+ .....++|.
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~   61 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR   61 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCS
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCcccc
Confidence            345899999999999999999998886 444455554

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.51  E-value=1.8e-07  Score=93.69  Aligned_cols=61  Identities=18%  Similarity=0.260  Sum_probs=46.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCC--CCCCccCceeeeEEEEEeeCCe---------------EEEEEEEeCCCCCC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNT--FSPKYKRTIEEMHHEDFSMNGV---------------HLKLDILDTSGEQS  122 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~--f~~~~~~Tt~d~~~~~v~vdg~---------------~v~L~I~DT~G~~~  122 (592)
                      .+||.|||.||||||||+|++++..  -..+|+.||.+.....+.+...               ...++|+|.+|...
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            3799999999999999999999764  3578888887655555554321               24577899999843

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.46  E-value=1.2e-07  Score=95.52  Aligned_cols=35  Identities=29%  Similarity=0.317  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC-CCCCccCceee
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNT-FSPKYKRTIEE   97 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~-f~~~~~~Tt~d   97 (592)
                      +||+|||.||||||||+|+|++.. .+.+|+.||.+
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~   36 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIE   36 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCccc
Confidence            489999999999999999999664 34677777754

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.40  E-value=6.8e-07  Score=89.17  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=24.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCCC-CCccCce
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTFS-PKYKRTI   95 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f~-~~~~~Tt   95 (592)
                      ..+|+|||..++|||||||.|++..+. ....++|
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T   58 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVT   58 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC------
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccc
Confidence            458999999999999999999988763 3333444

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.79  E-value=9.2e-06  Score=79.91  Aligned_cols=56  Identities=25%  Similarity=0.419  Sum_probs=35.0

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHcCCCC--CCccCceeeeEEEEEeeCCeEEEEEEEeCCCC
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLYNTFS--PKYKRTIEEMHHEDFSMNGVHLKLDILDTSGE  120 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~~~f~--~~~~~Tt~d~~~~~v~vdg~~v~L~I~DT~G~  120 (592)
                      ...++|+|+|.||||||||+|+|.+....  ...+.+|.+..  .+.. +..  +.++||||.
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~--~i~~-~~~--~~l~DTPGi  167 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKV-GKE--LELLDTPGI  167 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEE-TTT--EEEEECCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEECCcccccccce--EEEC-CCC--eEEecCCCc
Confidence            56799999999999999999999977543  34444444321  1222 233  455999998

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.33  E-value=0.00059  Score=60.72  Aligned_cols=22  Identities=27%  Similarity=0.733  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      +||+|+|++|+|||||++.+++
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            4899999999999999999985

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.31  E-value=0.00013  Score=69.73  Aligned_cols=22  Identities=27%  Similarity=0.280  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      ..+|+|.+|||||||+|+|...
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTT
T ss_pred             eEEEECCCCCCHHHHHHhhcch
Confidence            6799999999999999999865

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.20  E-value=0.00028  Score=67.38  Aligned_cols=84  Identities=25%  Similarity=0.225  Sum_probs=58.7

Q ss_pred             hhcCCcEEEEEeCCCcC-CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccC
Q psy1524         186 ISSADAFILVYAIDDPN-SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQI  264 (592)
Q Consensus       186 ~~~AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  264 (592)
                      +.+.|.+++|+++.+|. +...+..++-....    .+++.+||+||+||.++..                         
T Consensus         8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~-------------------------   58 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDD-------------------------   58 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHH-------------------------
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHH-------------------------
Confidence            57899999999998864 56666666554443    4789999999999986511                         


Q ss_pred             CCCCCCCChHHHHHHHh-hcCCCeEEEcccCCCccHHHHHHHH
Q psy1524         265 SGTPDQVPYDTTESVVQ-VDWENGFVEASAKDNTNITQVFKEL  306 (592)
Q Consensus       265 ~~~~r~Vs~ee~~~la~-~~~~~~~~EvSAktg~gVeeLf~~L  306 (592)
                              .+....+.. .....+++.+||+++.|++++...+
T Consensus        59 --------~~~~~~~~~~~~~~~~v~~vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          59 --------LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYL   93 (225)
T ss_dssp             --------HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred             --------HHHHHHhhcccccceeEEEeccccchhHhhHHHHh
Confidence                    111222222 1234678999999999999987654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.13  E-value=0.00053  Score=66.88  Aligned_cols=90  Identities=14%  Similarity=0.080  Sum_probs=60.2

Q ss_pred             HHHhhhcCCcEEEEEeCCCcCCHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCcccc
Q psy1524         182 RALSISSADAFILVYAIDDPNSFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCA  261 (592)
Q Consensus       182 ~~~~~~~AD~iIlVyDvsd~~Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~  261 (592)
                      ....+..+|+||+|.|+.++.+..+-  .   +.+..  .++|+|+|+||+||.+..                       
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~~--~---l~~~~--~~Kp~IlVlNK~DLv~~~-----------------------   58 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRNP--M---IEDIL--KNKPRIMLLNKADKADAA-----------------------   58 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSCH--H---HHHHC--SSSCEEEEEECGGGSCHH-----------------------
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCCH--H---HHHHH--cCCCeEEEEECccCCchH-----------------------
Confidence            34468899999999999988765431  1   22221  367999999999998651                       


Q ss_pred             ccCCCCCCCCChHHHHHHHhhcCCCeEEEcccCCCccHHHHHHHHHHHHHH
Q psy1524         262 HQISGTPDQVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKV  312 (592)
Q Consensus       262 ~~~~~~~r~Vs~ee~~~la~~~~~~~~~EvSAktg~gVeeLf~~Li~~i~~  312 (592)
                               ...+....+ + .....++.+||+++.++.++...+.+.+..
T Consensus        59 ---------~~~~w~~~f-~-~~~~~~i~isa~~~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          59 ---------VTQQWKEHF-E-NQGIRSLSINSVNGQGLNQIVPASKEILQE   98 (273)
T ss_dssp             ---------HHHHHHHHH-H-TTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHH-H-hcCCccceeecccCCCccccchhhhhhhhh
Confidence                     011111222 2 335568999999999988877776665543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.07  E-value=0.00011  Score=70.43  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      ..+|+|.+|||||||+|+|..+
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            6689999999999999999965

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.0097  Score=55.85  Aligned_cols=23  Identities=17%  Similarity=0.330  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .-++|.|.-|+|||||+++++..
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            45788999999999999999964

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.46  E-value=0.00071  Score=64.69  Aligned_cols=85  Identities=16%  Similarity=0.246  Sum_probs=58.7

Q ss_pred             hhcCCcEEEEEeCCCcC-CHHHHHHHHHHHHHhhcCCCCCEEEEEeCCCCcccccccccCCCCcccccCCCCCccccccC
Q psy1524         186 ISSADAFILVYAIDDPN-SFEEIRLIRDHIFETKASTAVPIVVVGNKSDLADENRQVDLTGGPFQTYLSGLPDSVCAHQI  264 (592)
Q Consensus       186 ~~~AD~iIlVyDvsd~~-Sfe~l~~~l~~L~~~~~~~~~PIILVgNK~DL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  264 (592)
                      +.+.|.+++|+++.++. ++..+..++-....    .+++.+||+||+||.++..                         
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL~~~~~-------------------------   58 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQD-------------------------   58 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHH-------------------------
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecccccccHH-------------------------
Confidence            56899999999998764 56777766554433    4789999999999986511                         


Q ss_pred             CCCCCCCChHHHHHHHh--hcCCCeEEEcccCCCccHHHHHHHH
Q psy1524         265 SGTPDQVPYDTTESVVQ--VDWENGFVEASAKDNTNITQVFKEL  306 (592)
Q Consensus       265 ~~~~r~Vs~ee~~~la~--~~~~~~~~EvSAktg~gVeeLf~~L  306 (592)
                             ..+....+..  ...+.+++.+||+++.|++++...+
T Consensus        59 -------~~~~~~~~~~~y~~~g~~v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          59 -------TEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             -------HHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGG
T ss_pred             -------HHHHHHHHHHHHhhccccceeeecCChhHHHHHHHhh
Confidence                   0111222221  1336789999999999998876543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.09  E-value=0.0013  Score=57.90  Aligned_cols=22  Identities=27%  Similarity=0.626  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      =+|+|+|++|||||||+++|..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999984

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=95.77  E-value=0.0028  Score=55.69  Aligned_cols=25  Identities=20%  Similarity=0.373  Sum_probs=22.7

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      +...+|+|+|.+||||||+.+.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            5668999999999999999999984

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.61  E-value=0.0026  Score=55.63  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..+|+|+|++||||||+.++|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999974

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.0031  Score=55.09  Aligned_cols=21  Identities=10%  Similarity=0.294  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      -|+|+|.+|||||||+++++.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999984

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.03  E-value=0.0062  Score=54.92  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=21.7

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      +.++|+|+|++||||||+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999999984

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.026  Score=54.74  Aligned_cols=60  Identities=17%  Similarity=0.122  Sum_probs=38.8

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCCCC----CCccCceeeeEEEEEe-eCCeEEEEEEEeCCCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNTFS----PKYKRTIEEMHHEDFS-MNGVHLKLDILDTSGE  120 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~f~----~~~~~Tt~d~~~~~v~-vdg~~v~L~I~DT~G~  120 (592)
                      +..-|+|+|+..+|||+|+|+|.+..+.    ....++|......... .++....+.++||.|.
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~   95 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL   95 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccc
Confidence            4567889999999999999999976532    2222333322222222 2444455667999998

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.99  E-value=0.0058  Score=52.54  Aligned_cols=20  Identities=30%  Similarity=0.617  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q psy1524          65 VVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~   84 (592)
                      |+|+|.+|||||||+++|+.
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77899999999999999874

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.75  E-value=0.0074  Score=53.57  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ++|+|+|+|||||||+...|+.
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998874

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=94.67  E-value=0.0076  Score=52.20  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      -|+|.|++||||||++++|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999999984

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=94.46  E-value=0.0084  Score=51.20  Aligned_cols=21  Identities=24%  Similarity=0.369  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+|+|++||||||+...|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999999984

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.43  E-value=0.01  Score=53.05  Aligned_cols=22  Identities=23%  Similarity=0.465  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ++|+|+|++||||||+...|+.
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999984

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.42  E-value=0.0095  Score=52.52  Aligned_cols=20  Identities=20%  Similarity=0.449  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q psy1524          65 VVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~   84 (592)
                      |.|+|.+|||||||+++|+.
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            45999999999999999983

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.42  E-value=0.0092  Score=53.88  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .-|+++|.||||||||.++|+.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999983

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=94.36  E-value=0.01  Score=53.06  Aligned_cols=22  Identities=32%  Similarity=0.533  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ++|+|+|++||||||+...|+.
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999984

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.35  E-value=0.013  Score=52.82  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...|+|+|++||||||++.+|+.
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999984

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=94.33  E-value=0.012  Score=53.53  Aligned_cols=25  Identities=24%  Similarity=0.446  Sum_probs=22.4

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .+.++|+|+|+|||||||+...|+.
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            3557999999999999999999984

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.27  E-value=0.0093  Score=53.74  Aligned_cols=23  Identities=26%  Similarity=0.354  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .++|+|+|++||||||++..|..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999873

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.15  E-value=0.012  Score=52.43  Aligned_cols=22  Identities=18%  Similarity=0.507  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      +||+|+|++||||||+..+|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999983

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.012  Score=51.30  Aligned_cols=21  Identities=38%  Similarity=0.657  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+|.|++|+|||||+..++.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999999984

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.07  E-value=0.013  Score=52.35  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .++|+|+|++||||||+...|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999984

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.05  E-value=0.012  Score=53.14  Aligned_cols=21  Identities=24%  Similarity=0.597  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~   85 (592)
                      |+|+|++|||||||+++|+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999843

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.93  E-value=0.014  Score=51.13  Aligned_cols=21  Identities=33%  Similarity=0.381  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      -|+|.|.+||||||++++|..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378889999999999999873

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.83  E-value=0.014  Score=52.25  Aligned_cols=21  Identities=33%  Similarity=0.495  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~   85 (592)
                      |+|+|++|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999844

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.75  E-value=0.19  Score=46.31  Aligned_cols=22  Identities=18%  Similarity=0.289  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|.|++|+||||++..++..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999998864

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.016  Score=52.38  Aligned_cols=20  Identities=25%  Similarity=0.547  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q psy1524          65 VVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~   84 (592)
                      |+|+|++|||||||+++|+.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999984

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.51  E-value=0.014  Score=51.32  Aligned_cols=21  Identities=43%  Similarity=0.569  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~   83 (592)
                      .+|+|+|.+||||||+...|.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            379999999999999998887

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.31  E-value=0.018  Score=51.63  Aligned_cols=22  Identities=41%  Similarity=0.581  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHH
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~   83 (592)
                      ..-|+++|.+|||||||+.++.
T Consensus        14 p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4578999999999999999986

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.31  E-value=0.027  Score=49.87  Aligned_cols=24  Identities=17%  Similarity=0.260  Sum_probs=21.3

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..+-|+|.|.+|||||||+++|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457799999999999999999983

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.31  E-value=0.02  Score=53.05  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      =|+|+|++|||||||+++|+..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999999854

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.024  Score=50.90  Aligned_cols=22  Identities=36%  Similarity=0.585  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      +.|+|+|++||||||+..+|+.
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999984

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.23  E-value=0.022  Score=49.58  Aligned_cols=20  Identities=30%  Similarity=0.511  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q psy1524          65 VVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~   84 (592)
                      |+|.|++||||||+.+.|..
T Consensus         7 I~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77899999999999998874

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.21  E-value=0.021  Score=51.82  Aligned_cols=20  Identities=30%  Similarity=0.605  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q psy1524          65 VVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~   84 (592)
                      |+|+|++|||||||+++|+.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999974

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.13  E-value=0.022  Score=49.47  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      -=|+|+|.+||||||+.+.|..
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3466799999999999999984

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=93.12  E-value=0.03  Score=48.45  Aligned_cols=24  Identities=17%  Similarity=0.257  Sum_probs=20.7

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHH
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~   83 (592)
                      ..-+-|.|+|.+||||||+...|.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            344788999999999999998887

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=93.12  E-value=0.023  Score=49.28  Aligned_cols=20  Identities=30%  Similarity=0.601  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q psy1524          65 VVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~   84 (592)
                      |+|.|.+||||||+.+.|..
T Consensus         6 I~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56669999999999999984

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.07  E-value=0.038  Score=56.20  Aligned_cols=20  Identities=35%  Similarity=0.702  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~   83 (592)
                      ++++||++|||||+|+..|.
T Consensus        45 n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHH
Confidence            67999999999999997665

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=92.86  E-value=0.024  Score=54.04  Aligned_cols=21  Identities=19%  Similarity=0.294  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      +|+|+|++|+|||||++-+.+
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            899999999999999998885

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=92.75  E-value=0.025  Score=49.80  Aligned_cols=21  Identities=24%  Similarity=0.335  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      +|+|+|.+||||||+...|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999873

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=92.56  E-value=0.033  Score=50.81  Aligned_cols=24  Identities=17%  Similarity=0.260  Sum_probs=21.5

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..++|+|-|++||||||+...|+.
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999984

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=92.54  E-value=0.029  Score=49.17  Aligned_cols=20  Identities=40%  Similarity=0.725  Sum_probs=17.5

Q ss_pred             EE-EEEcCCCCcHHHHHHHHH
Q psy1524          64 KV-VVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        64 KI-vIvG~~nVGKSSLInrL~   83 (592)
                      || +|.|.+||||||+++.|.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            55 467999999999999997

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.54  E-value=0.027  Score=53.95  Aligned_cols=21  Identities=29%  Similarity=0.368  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      +|+|+|++|+|||||++-+++
T Consensus        43 ~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            899999999999999998874

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=92.47  E-value=0.029  Score=53.39  Aligned_cols=22  Identities=23%  Similarity=0.226  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      =+|+|+|++|+|||||++-+.+
T Consensus        29 e~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3899999999999999998874

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=92.44  E-value=0.055  Score=51.36  Aligned_cols=22  Identities=14%  Similarity=0.259  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|||||||++.+.+-
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            7899999999999999988853

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.41  E-value=0.054  Score=49.84  Aligned_cols=22  Identities=32%  Similarity=0.617  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      ++++||++|||||+++..|...
T Consensus        45 n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHH
Confidence            7999999999999999888843

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.33  E-value=0.03  Score=53.53  Aligned_cols=21  Identities=19%  Similarity=0.249  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      +|+|+|++|+|||||++-+.+
T Consensus        42 ~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            899999999999999998874

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.31  E-value=0.032  Score=52.79  Aligned_cols=22  Identities=27%  Similarity=0.309  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -++|+|++|||||||++-+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            6899999999999999988753

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.28  E-value=0.03  Score=51.62  Aligned_cols=21  Identities=19%  Similarity=0.322  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .++|+|+.|||||||++-+++
T Consensus        29 i~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            678999999999999999974

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=92.24  E-value=0.049  Score=51.72  Aligned_cols=21  Identities=29%  Similarity=0.346  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      -++|+|++|||||||++-+.+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            688999999999999998875

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.12  E-value=0.035  Score=53.96  Aligned_cols=22  Identities=23%  Similarity=0.387  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .|+|+|++|+|||||++.+++-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            7899999999999999999853

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.06  E-value=0.057  Score=52.11  Aligned_cols=22  Identities=23%  Similarity=0.499  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      ++++||++|||||+|+..|...
T Consensus        41 n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHH
Confidence            8999999999999999988844

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.04  E-value=0.032  Score=52.71  Aligned_cols=21  Identities=29%  Similarity=0.374  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      -++|+|++|||||||++-+.+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCcchhhHhccC
Confidence            689999999999999997664

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.01  E-value=0.05  Score=48.84  Aligned_cols=23  Identities=26%  Similarity=0.563  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .--|+|+|++||||||+...|+.
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999999984

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.98  E-value=0.082  Score=48.47  Aligned_cols=22  Identities=23%  Similarity=0.563  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|.|++|+||||++..++..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHH
Confidence            4899999999999999988743

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.94  E-value=0.12  Score=47.29  Aligned_cols=22  Identities=27%  Similarity=0.452  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|.|++|+|||||+..++..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4899999999999999999864

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.91  E-value=0.038  Score=52.52  Aligned_cols=22  Identities=23%  Similarity=0.244  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -++|+|++|||||||++-+.+-
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            5679999999999999999853

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=91.83  E-value=0.041  Score=48.45  Aligned_cols=20  Identities=10%  Similarity=0.326  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~   83 (592)
                      .|+|+|.+||||||+.+.|.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            37899999999999999997

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.71  E-value=0.041  Score=49.49  Aligned_cols=21  Identities=29%  Similarity=0.599  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      -|+|+|+|||||||++.+|+.
T Consensus        10 iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999984

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.66  E-value=0.042  Score=52.17  Aligned_cols=22  Identities=18%  Similarity=0.267  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -++|+|++|||||||++-+.+-
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            6899999999999999988854

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=91.39  E-value=0.036  Score=52.35  Aligned_cols=22  Identities=18%  Similarity=0.234  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -++|+|++|||||||++.+.+-
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999999854

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=0.033  Score=49.30  Aligned_cols=23  Identities=17%  Similarity=0.148  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      -..|.|+|.+|||||||.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45788999999999999999973

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.34  E-value=0.063  Score=50.01  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -|++.|+||+|||||+..+.+.
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999854

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.30  E-value=0.054  Score=51.51  Aligned_cols=22  Identities=14%  Similarity=0.261  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|+|++|||||||++-+.+-
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            7899999999999999999853

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=91.27  E-value=0.088  Score=48.98  Aligned_cols=25  Identities=16%  Similarity=0.282  Sum_probs=20.9

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ....-|+++|++||||||.+-+|..
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4456889999999999999888773

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.13  E-value=0.055  Score=48.38  Aligned_cols=26  Identities=19%  Similarity=0.323  Sum_probs=22.3

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ....+-|+|-|..||||||+++.|..
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHH
Confidence            34557899999999999999999874

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=91.10  E-value=0.037  Score=52.15  Aligned_cols=21  Identities=24%  Similarity=0.376  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      -++|+|+.|+|||||++.+++
T Consensus        27 i~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            689999999999999999986

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=90.98  E-value=0.052  Score=50.26  Aligned_cols=21  Identities=38%  Similarity=0.422  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      -|+|.|++|+|||||+.+++.
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578999999999999999874

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=90.93  E-value=0.053  Score=50.21  Aligned_cols=23  Identities=22%  Similarity=0.560  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      ..++|.|++|+|||||++.+++.
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999853

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.86  E-value=0.015  Score=51.07  Aligned_cols=43  Identities=26%  Similarity=0.638  Sum_probs=35.7

Q ss_pred             CCCCCCCcceeeEEeecCCeEEeecccCcchHHHHHHHHHHhhh
Q psy1524         336 NPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKV  379 (592)
Q Consensus       336 ~pVpydta~slas~d~~~~fvEiSAK~~~nI~~lf~e~v~~akk  379 (592)
                      +.|+++++...+ .++++.|+|+|||++.+|..+|+.++..++|
T Consensus       125 r~v~~~~~~~~a-~~~~~~~~e~Sak~~~~v~~~f~~li~~~~K  167 (167)
T d1xtqa1         125 RVISYEEGKALA-ESWNAAFLESSAKENQTAVDVFRRIILEAEK  167 (167)
T ss_dssp             CCSCHHHHHHHH-HHHTCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHH-HHcCCEEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            456666665554 5678899999999999999999999999876

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.73  E-value=0.035  Score=53.29  Aligned_cols=21  Identities=29%  Similarity=0.328  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      +|+|+|++|+|||||++-+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            899999999999999986663

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=90.59  E-value=0.055  Score=51.29  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -++|+|+.|+|||||++.+.+-
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6789999999999999999854

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.56  E-value=0.072  Score=48.39  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .+-|+|.|.+|||||||.++|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999974

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=90.44  E-value=0.058  Score=53.36  Aligned_cols=22  Identities=32%  Similarity=0.594  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      -+|+|.|.+|+|||||++.|+.
T Consensus       167 ~nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGG
T ss_pred             CCEEEEeeccccchHHHHHHhh
Confidence            4699999999999999999984

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=90.28  E-value=0.065  Score=49.48  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|.|++|+|||||++.+...
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhc
Confidence            5899999999999999998843

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=89.99  E-value=0.068  Score=50.60  Aligned_cols=22  Identities=14%  Similarity=0.143  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -++|+|+.|+|||||++-+++-
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6789999999999999998854

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.70  E-value=0.073  Score=50.99  Aligned_cols=21  Identities=19%  Similarity=0.479  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .++|+|++|||||||++.+.+
T Consensus        30 i~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            789999999999999999874

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.69  E-value=0.072  Score=50.83  Aligned_cols=22  Identities=23%  Similarity=0.302  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -++|+|+.|||||||++.+++-
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHCC
Confidence            5789999999999999999854

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=89.54  E-value=0.13  Score=47.72  Aligned_cols=24  Identities=17%  Similarity=0.357  Sum_probs=15.9

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...-|+++|++||||||.+-+|..
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~   34 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAY   34 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345688899999999999888873

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=89.46  E-value=0.087  Score=48.64  Aligned_cols=23  Identities=17%  Similarity=0.433  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -.++|.|++|+|||++++.+...
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998854

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.19  E-value=0.082  Score=47.08  Aligned_cols=43  Identities=19%  Similarity=0.292  Sum_probs=32.8

Q ss_pred             CCCCCCCCcceeeEEeecCCeEEeecccCcchHHHHHHHHHHh
Q psy1524         335 PNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQA  377 (592)
Q Consensus       335 ~~pVpydta~slas~d~~~~fvEiSAK~~~nI~~lf~e~v~~a  377 (592)
                      .+.|.++++...+..-..+.|+|+||+.+.+|..+|.+++..+
T Consensus       140 ~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~i  182 (185)
T d2atxa1         140 EKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI  182 (185)
T ss_dssp             CCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHH
Confidence            3456666666555333347999999999999999999998765

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=89.16  E-value=0.087  Score=51.43  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -.|+++|+||||||.|.+++...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            36899999999999999999853

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.87  E-value=0.096  Score=48.51  Aligned_cols=23  Identities=22%  Similarity=0.453  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -.++|.|++|+||||++..+++.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999854

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=88.61  E-value=0.14  Score=48.32  Aligned_cols=23  Identities=22%  Similarity=0.385  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ...|++.|++|+|||+|++.+.+
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            45799999999999999999984

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=88.49  E-value=0.19  Score=46.37  Aligned_cols=19  Identities=16%  Similarity=0.263  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q psy1524          65 VVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~   83 (592)
                      |+++|++||||||.+-+|.
T Consensus        13 i~lvGp~GvGKTTTiaKLA   31 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLA   31 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6789999999999999887

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=88.48  E-value=0.11  Score=46.76  Aligned_cols=22  Identities=14%  Similarity=0.255  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      -|+|.|++||||||+...|...
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5778899999999999999843

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.35  E-value=0.11  Score=47.62  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|.|++|+|||||+..+...
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999998854

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.20  E-value=0.12  Score=45.20  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYNTFS   88 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~~f~   88 (592)
                      -+.|.|++|+|||+|+.+|+.+...
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~~~   49 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTCQL   49 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            6789999999999999999865443

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.02  E-value=0.13  Score=46.01  Aligned_cols=20  Identities=15%  Similarity=0.398  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q psy1524          64 KVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~   83 (592)
                      -|+|-|..||||||++..|.
T Consensus         2 lI~ieG~dGsGKST~~~~L~   21 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLS   21 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999887

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=87.56  E-value=0.08  Score=49.18  Aligned_cols=21  Identities=14%  Similarity=0.207  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q psy1524          65 VVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~~   85 (592)
                      ++|.|++|+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            445699999999999998843

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=87.50  E-value=0.23  Score=45.96  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ..-|+++|++||||||.+-+|..
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~   31 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLAR   31 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999998873

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=87.02  E-value=0.59  Score=41.12  Aligned_cols=24  Identities=21%  Similarity=0.279  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      ..-|++.|+=|||||||+..++..
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEecCCCccHHHHHHHHHhh
Confidence            356889999999999999999954

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=87.01  E-value=0.18  Score=46.48  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      --|+++|++||||||.+-+|..
T Consensus         7 ~vi~lvGptGvGKTTTiaKLA~   28 (207)
T d1okkd2           7 RVVLVVGVNGVGKTTTIAKLGR   28 (207)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999888873

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.70  E-value=0.16  Score=46.38  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .++|.|++|+|||||+..++..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            3899999999999999999854

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=86.69  E-value=0.23  Score=44.01  Aligned_cols=23  Identities=17%  Similarity=0.148  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      .+-|+|.|.+||||||+++.|..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999998864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=86.24  E-value=0.17  Score=47.76  Aligned_cols=21  Identities=29%  Similarity=0.483  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|++.|++|+|||+|++.+.+
T Consensus        44 giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHH
Confidence            599999999999999999995

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.02  E-value=0.051  Score=47.50  Aligned_cols=41  Identities=37%  Similarity=0.562  Sum_probs=31.0

Q ss_pred             CCCCCcceeeEEeecCCeEEeecccCcchHHHHHHHHHHhhh
Q psy1524         338 VPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKV  379 (592)
Q Consensus       338 Vpydta~slas~d~~~~fvEiSAK~~~nI~~lf~e~v~~akk  379 (592)
                      |+.+++...+ .++++.|+|+|||.+.+|..+|++++..+++
T Consensus       126 v~~~e~~~~~-~~~~~~~~e~Sak~~~~v~e~f~~l~~~~~~  166 (171)
T d2erxa1         126 VQSSEAEALA-RTWKCAFMETSAKLNHNVKELFQELLNLEKR  166 (171)
T ss_dssp             SCHHHHHHHH-HHHTCEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred             ccHHHHHHHH-HHcCCeEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence            4444444433 4567889999999999999999999977654

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=85.78  E-value=0.26  Score=45.17  Aligned_cols=25  Identities=16%  Similarity=0.158  Sum_probs=21.3

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHHc
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      ....-|.|.|.+|+|||||.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3446799999999999999999873

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=85.55  E-value=0.23  Score=44.64  Aligned_cols=25  Identities=24%  Similarity=0.329  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTF   87 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f   87 (592)
                      .=|+|+|++|+|||||...|+...+
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4689999999999999999986543

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=85.34  E-value=0.21  Score=45.14  Aligned_cols=20  Identities=20%  Similarity=0.273  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q psy1524          65 VVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~   84 (592)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999999873

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=85.21  E-value=0.29  Score=47.88  Aligned_cols=25  Identities=20%  Similarity=0.254  Sum_probs=22.0

Q ss_pred             CCcceEEEEEcCCCCcHHHHHHHHH
Q psy1524          59 HDTRHKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        59 ~~~~iKIvIvG~~nVGKSSLInrL~   83 (592)
                      ....+-|+|.|.+|||||||.+.|.
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            3566899999999999999998886

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.13  E-value=0.21  Score=47.23  Aligned_cols=21  Identities=24%  Similarity=0.426  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|++.|++|+|||+|++.++.
T Consensus        40 giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHH
Confidence            699999999999999999984

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=85.04  E-value=0.21  Score=47.41  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      -.|++.|++|+|||+|++.++.
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHH
Confidence            3689999999999999999984

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.01  E-value=0.19  Score=45.37  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNT   86 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~   86 (592)
                      --++|.|++|+|||+|+.+|+...
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            368899999999999999998553

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=84.93  E-value=0.18  Score=51.79  Aligned_cols=21  Identities=29%  Similarity=0.570  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      +|++||++|||||-|+++|..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999984

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.75  E-value=0.099  Score=45.68  Aligned_cols=42  Identities=26%  Similarity=0.341  Sum_probs=32.5

Q ss_pred             CCCCCCcceeeEEeecCCeEEeecccCcchHHHHHHHHHHhhh
Q psy1524         337 PVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKV  379 (592)
Q Consensus       337 pVpydta~slas~d~~~~fvEiSAK~~~nI~~lf~e~v~~akk  379 (592)
                      .+..+++...+ ..+++.|+|+||+.+.+|..+|.+++..++|
T Consensus       127 ~v~~~~~~~~~-~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~k  168 (171)
T d2erya1         127 QVTQEEGQQLA-RQLKVTYMEASAKIRMNVDQAFHELVRVIRK  168 (171)
T ss_dssp             SSCHHHHHHHH-HHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHH-HHcCCEEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence            34444444443 4567889999999999999999999988765

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.71  E-value=0.23  Score=45.45  Aligned_cols=25  Identities=20%  Similarity=0.193  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTF   87 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f   87 (592)
                      --++|.|++|+|||+|..+|+....
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            4688999999999999999985443

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=84.60  E-value=0.27  Score=44.25  Aligned_cols=25  Identities=20%  Similarity=0.321  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTF   87 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f   87 (592)
                      .=|+|.|++|+|||||...|+...+
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            4689999999999999999995433

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=84.22  E-value=0.069  Score=46.49  Aligned_cols=19  Identities=32%  Similarity=0.606  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q psy1524          65 VVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~   83 (592)
                      .+|+|+.|+|||||+.++.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3578999999999999986

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.21  E-value=0.098  Score=45.97  Aligned_cols=43  Identities=21%  Similarity=0.397  Sum_probs=33.0

Q ss_pred             CCCCCCCcceeeEEeecCCeEEeecccCcchHHHHHHHHHHhhh
Q psy1524         336 NPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKV  379 (592)
Q Consensus       336 ~pVpydta~slas~d~~~~fvEiSAK~~~nI~~lf~e~v~~akk  379 (592)
                      +.++.+++...+ ..+++.|+|+|||.+.+|..+|++++..+++
T Consensus       127 ~~v~~~~~~~~a-~~~~~~~~e~Sak~g~~i~~~f~~l~~~i~~  169 (172)
T d2g3ya1         127 REVSVSEGRACA-VVFDCKFIETSAAVQHNVKELFEGIVRQVRL  169 (172)
T ss_dssp             CCSCHHHHHHHH-HHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHH-HHcCCeEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence            345555554443 5568899999999999999999999987653

>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Ta1064 (RFK), N-terminal domain
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=84.13  E-value=0.21  Score=39.39  Aligned_cols=35  Identities=20%  Similarity=0.301  Sum_probs=31.7

Q ss_pred             CCCCCCcCceeeeeecceEEEeEcchhHHHHHhhc
Q psy1524         403 NPSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVL  437 (592)
Q Consensus       403 ~~~~~~~~~~~~~~~w~~~y~~l~~~g~~~l~~~l  437 (592)
                      .+.|..+|||+...-.|..|+.||++|.++|++.+
T Consensus        42 l~~Le~~GlV~r~~D~R~~~i~LT~~G~~~l~~~~   76 (85)
T d3ctaa1          42 IIDLEKNGYITRTVTKRGQILNITEKGLDVLYTEF   76 (85)
T ss_dssp             HHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred             HHHHHHCCCeeeecccccccceECHHHHHHHHHHH
Confidence            37788899999999999999999999999999765

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.75  E-value=0.18  Score=46.09  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+|-|..||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998874

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.47  E-value=0.27  Score=44.95  Aligned_cols=20  Identities=25%  Similarity=0.433  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q psy1524          65 VVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        65 IvIvG~~nVGKSSLInrL~~   84 (592)
                      |+|-|..||||||++..|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999998888763

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=83.30  E-value=0.29  Score=44.74  Aligned_cols=24  Identities=25%  Similarity=0.520  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .--++|.|++|+|||+|+.+++.+
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            347889999999999999999855

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=83.12  E-value=0.33  Score=43.29  Aligned_cols=26  Identities=19%  Similarity=0.307  Sum_probs=22.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHcCCC
Q psy1524          62 RHKVVVMGGPKVGKSSIIHRFLYNTF   87 (592)
Q Consensus        62 ~iKIvIvG~~nVGKSSLInrL~~~~f   87 (592)
                      ..-|+|.|++|+|||||.-.|+...+
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            35789999999999999999986543

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=83.04  E-value=1.1  Score=42.28  Aligned_cols=23  Identities=17%  Similarity=0.313  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      --+.|.|++++|||+|+-+++..
T Consensus        55 ~itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEecCCCcHHHHHHHHHHHH
Confidence            36779999999999999988844

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=82.92  E-value=0.3  Score=43.95  Aligned_cols=25  Identities=24%  Similarity=0.175  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYNTF   87 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~~f   87 (592)
                      --++|.|++|+|||+|+.+++.+..
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999995543

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.79  E-value=0.12  Score=45.19  Aligned_cols=41  Identities=29%  Similarity=0.409  Sum_probs=31.7

Q ss_pred             CCCCCCcceeeEEeecCCeEEeecccCc-chHHHHHHHHHHhh
Q psy1524         337 PVPYDTTESVVQVDWENGFVEASAKDNT-NITQVFKELLVQAK  378 (592)
Q Consensus       337 pVpydta~slas~d~~~~fvEiSAK~~~-nI~~lf~e~v~~ak  378 (592)
                      .|+.+++...+ .++++.|+|+|||.+. ||..+|.+++..+.
T Consensus       123 ~V~~~e~~~~a-~~~~~~~~e~Saktg~gnV~e~F~~l~~~i~  164 (168)
T d2atva1         123 QVSTEEGEKLA-TELACAFYECSACTGEGNITEIFYELCREVR  164 (168)
T ss_dssp             CSCHHHHHHHH-HHHTSEEEECCTTTCTTCHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHH-HHhCCeEEEEccccCCcCHHHHHHHHHHHHH
Confidence            45555555554 4678899999999997 79999999997654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.75  E-value=0.12  Score=45.04  Aligned_cols=41  Identities=24%  Similarity=0.397  Sum_probs=30.9

Q ss_pred             CCCCCCcceeeEEeecCCeEEeecccCcchHHHHHHHHHHhh
Q psy1524         337 PVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAK  378 (592)
Q Consensus       337 pVpydta~slas~d~~~~fvEiSAK~~~nI~~lf~e~v~~ak  378 (592)
                      +|+..++...+ ..+++.|+|+||+.+.++..+|.+++..++
T Consensus       122 ~v~~~~~~~~~-~~~~~~~~e~Sak~~~~v~~~f~~l~~~i~  162 (168)
T d2gjsa1         122 EVSVDEGRACA-VVFDCKFIETSAALHHNVQALFEGVVRQIR  162 (168)
T ss_dssp             CSCHHHHHHHH-HHHTSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHH-HhcCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence            34444444333 557889999999999999999999987553

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=82.63  E-value=0.12  Score=45.17  Aligned_cols=41  Identities=27%  Similarity=0.531  Sum_probs=31.0

Q ss_pred             CCCCCCcceeeEEeecCCeEEeecccCcchHHHHHHHHHHhh
Q psy1524         337 PVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAK  378 (592)
Q Consensus       337 pVpydta~slas~d~~~~fvEiSAK~~~nI~~lf~e~v~~ak  378 (592)
                      +|..+++...+ .++++.|+|+|||.+.+|..+|++++...+
T Consensus       126 ~v~~~~~~~~~-~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~  166 (168)
T d1u8za_         126 QVSVEEAKNRA-DQWNVNYVETSAKTRANVDKVFFDLMREIR  166 (168)
T ss_dssp             CSCHHHHHHHH-HHHTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHH-HHcCCeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence            34444444433 456788999999999999999999987654

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.54  E-value=0.26  Score=46.73  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      --|++.|++|+|||+|++.++..
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHHH
Confidence            36999999999999999999843

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.48  E-value=0.13  Score=45.56  Aligned_cols=43  Identities=16%  Similarity=0.159  Sum_probs=32.1

Q ss_pred             CCCCCCCcceeeEEeecCCeEEeecccCcchHHHHHHHHHHhh
Q psy1524         336 NPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAK  378 (592)
Q Consensus       336 ~pVpydta~slas~d~~~~fvEiSAK~~~nI~~lf~e~v~~ak  378 (592)
                      +.+...++.......+.+.|+|+||+.+.++..+|.+++..+.
T Consensus       124 ~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~  166 (175)
T d2bmja1         124 RVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVV  166 (175)
T ss_dssp             CCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHHHHHHHHHHH
Confidence            3454444444443446788999999999999999999997664

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.39  E-value=0.093  Score=45.82  Aligned_cols=31  Identities=26%  Similarity=0.298  Sum_probs=26.9

Q ss_pred             EeecCCeEEeecccCcchHHHHHHHHHHhhh
Q psy1524         349 VDWENGFVEASAKDNTNITQVFKELLVQAKV  379 (592)
Q Consensus       349 ~d~~~~fvEiSAK~~~nI~~lf~e~v~~akk  379 (592)
                      ..+.+.|+|+||+.+.+|..+|.+++...++
T Consensus       139 ~~~~~~~~e~SAk~g~~V~e~f~~l~~~i~~  169 (170)
T d1r2qa_         139 DDNSLLFMETSAKTSMNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             HHTTCEEEECCTTTCTTHHHHHHHHHHTSCC
T ss_pred             HhcCCEEEEeeCCCCCCHHHHHHHHHHHHhh
Confidence            4567889999999999999999999877654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.06  E-value=0.24  Score=44.06  Aligned_cols=46  Identities=24%  Similarity=0.312  Sum_probs=33.7

Q ss_pred             CCCCCCCCcceeeEEeecCCeEEeecccCcchHHHHHHHHHHhhhc
Q psy1524         335 PNPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQAKVK  380 (592)
Q Consensus       335 ~~pVpydta~slas~d~~~~fvEiSAK~~~nI~~lf~e~v~~akkd  380 (592)
                      ...|..+++...+..-..+.|+|+||+.+.+|..+|++++..+.++
T Consensus       134 ~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             CCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHHHHHHHTSC
T ss_pred             cccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHhcC
Confidence            4455555655555333457899999999999999999998776543

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=81.18  E-value=0.23  Score=48.42  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      .|+|+|++|+|||+|+.++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            699999999999999999873

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=81.17  E-value=0.36  Score=45.90  Aligned_cols=23  Identities=26%  Similarity=0.275  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      .-|+|+|..|+|||||+..+.+.
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46789999999999999998743

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.07  E-value=0.17  Score=43.97  Aligned_cols=41  Identities=24%  Similarity=0.259  Sum_probs=32.0

Q ss_pred             CCCCCCCcceeeEEeecCCeEEeecccCcchHHHHHHHHHHh
Q psy1524         336 NPVPYDTTESVVQVDWENGFVEASAKDNTNITQVFKELLVQA  377 (592)
Q Consensus       336 ~pVpydta~slas~d~~~~fvEiSAK~~~nI~~lf~e~v~~a  377 (592)
                      +.|+.+++...+ ..+++.|+|+||+.+.+|..+|++++..+
T Consensus       124 ~~v~~~e~~~~a-~~~~~~~~e~Sak~~~~v~e~F~~l~~~i  164 (167)
T d1z08a1         124 RHVSIQEAESYA-ESVGAKHYHTSAKQNKGIEELFLDLCKRM  164 (167)
T ss_dssp             CCSCHHHHHHHH-HHTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             cccchHHHHHHH-HHcCCeEEEEecCCCcCHHHHHHHHHHHH
Confidence            345555665554 45778999999999999999999998654

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=81.01  E-value=0.58  Score=42.10  Aligned_cols=22  Identities=32%  Similarity=0.356  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~   84 (592)
                      +-|+|.|..||||||+++.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6789999999999999998864

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.85  E-value=0.22  Score=43.40  Aligned_cols=43  Identities=23%  Similarity=0.425  Sum_probs=33.3

Q ss_pred             CCCCCCCcceeeEEeecCCeEEeecccCc-chHHHHHHHHHHhhh
Q psy1524         336 NPVPYDTTESVVQVDWENGFVEASAKDNT-NITQVFKELLVQAKV  379 (592)
Q Consensus       336 ~pVpydta~slas~d~~~~fvEiSAK~~~-nI~~lf~e~v~~akk  379 (592)
                      +.|..+++...+ ..+++.|+|+|||.+. ||.++|..++..+.+
T Consensus       125 ~~v~~e~~~~~~-~~~~~~~~e~Sak~~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         125 RKVTRDQGKEMA-TKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             CCSCHHHHHHHH-HHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             ceeehhhHHHHH-HHcCCEEEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence            455666665555 5678899999999875 999999999977654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.72  E-value=0.4  Score=43.77  Aligned_cols=21  Identities=24%  Similarity=0.423  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q psy1524          64 KVVVMGGPKVGKSSIIHRFLY   84 (592)
Q Consensus        64 KIvIvG~~nVGKSSLInrL~~   84 (592)
                      -|+|=|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            588999999999999999984

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=80.60  E-value=0.58  Score=42.24  Aligned_cols=23  Identities=30%  Similarity=0.368  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q psy1524          63 HKVVVMGGPKVGKSSIIHRFLYN   85 (592)
Q Consensus        63 iKIvIvG~~nVGKSSLInrL~~~   85 (592)
                      +-|+|.|..||||||+++.|...
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            56889999999999999988744

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.43  E-value=0.43  Score=43.29  Aligned_cols=26  Identities=15%  Similarity=0.261  Sum_probs=21.8

Q ss_pred             cceEEEEEcCCCCcHHHHHHHHHcCC
Q psy1524          61 TRHKVVVMGGPKVGKSSIIHRFLYNT   86 (592)
Q Consensus        61 ~~iKIvIvG~~nVGKSSLInrL~~~~   86 (592)
                      .---++|.|++|+|||+|..+|+.+.
T Consensus        36 ~G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          36 SMAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            33478899999999999999998543

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.26  E-value=0.62  Score=44.88  Aligned_cols=24  Identities=17%  Similarity=0.080  Sum_probs=20.9

Q ss_pred             CcceEEEEEcCCCCcHHHHHHHHH
Q psy1524          60 DTRHKVVVMGGPKVGKSSIIHRFL   83 (592)
Q Consensus        60 ~~~iKIvIvG~~nVGKSSLInrL~   83 (592)
                      ...+=|.|-|.+|||||||...+.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHH
Confidence            456889999999999999998776