Psyllid ID: psy15304

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK
Secondary Structure (PSIPRED)
ccccccccEEEEEEccccEEEEccccccccccEEEEccccccccccccccHHHHHHHccccEEcccEEEEEccEEEEEEccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEccEEcEEEEccEEEEcEcccccccccEccccccccccccccccccccHHHHHHHEEEccccEEEEccEEcEEcccccEEEEccccccccc
Coil and Loop (DISEMBL)
mrgvtseamvmcastpdkveilappsaakpgdliqvegytrnpdpvlnpkkkifetvapdlktndsnqatykgkVWTVENVEgfvtsqslanvnik
Flexible Loop (DISEMBL)
MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYtrnpdpvlnpKKKIFEtvapdlktndsnqatykgKVWTVENVegfvtsqslanvnik
Low Complexity Region (SEG)
MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK
Disordered region (IsUnstruct)
****************************************************IF**************ATYKGKVWTVENVEGFVT**********
Disordered Region (DISOPRED)
MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVE*****************ETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNI*
Disordered Region (DISEMBL)
MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK
Disordered Region (DISPRO)
**GVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANV*I*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	96	2.2.26 [Sep-21-2011]
Q12904	312	Aminoacyl tRNA synthase c	yes	N/A	0.989	0.304	0.531	2e-22
P31230	310	Aminoacyl tRNA synthase c	yes	N/A	0.989	0.306	0.541	3e-22
O54873	359	Aminoacyl tRNA synthase c	yes	N/A	0.989	0.264	0.531	4e-22
Q20970	917	Methionine--tRNA ligase,	yes	N/A	0.989	0.103	0.5	2e-17
Q4KM49	528	Tyrosine--tRNA ligase, cy	no	N/A	0.968	0.176	0.404	6e-12
Q7ZX51	528	Tyrosine--tRNA ligase, cy	N/A	N/A	0.968	0.176	0.404	7e-12
P46672	376	GU4 nucleic-binding prote	yes	N/A	0.75	0.191	0.465	7e-12
Q6TGS6	529	Tyrosine--tRNA ligase, cy	no	N/A	0.937	0.170	0.421	8e-12
Q6DIJ1	528	Tyrosine--tRNA ligase, cy	no	N/A	0.968	0.176	0.393	2e-11
Q91WQ3	528	Tyrosine--tRNA ligase, cy	no	N/A	0.968	0.176	0.393	2e-11

>sp|Q12904|AIMP1_HUMAN Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 68/96 (70%), Gaps = 1/96 (1%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
           MRGV S+AMVMCAS+P+K+EILAPP+ + PGD I  + +   PD  LNPKKKI+E + PD
Sbjct: 218 MRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPD 277

Query: 61  LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
           L TND   ATYKG  + V+  +G   +Q+++N  IK
Sbjct: 278 LHTNDECVATYKGVPFEVKG-KGVCRAQTMSNSGIK 312

Non-catalytic component of the multisynthase complex. Stimulates the catalytic activity of cytoplasmic arginyl-tRNA synthase. Binds tRNA. Possesses inflammatory cytokine activity. Negatively regulates TGF-beta signaling through stabilization of SMURF2 by binding to SMURF2 and inhibiting its SMAD7-mediated degradation. Involved in glucose homeostasis through induction of glucagon secretion at low glucose levels. Promotes dermal fibroblast proliferation and wound repair. Regulates KDELR1-mediated retention of HSP90B1/gp96 in the endoplasmic reticulum. Plays a role in angiogenesis by inducing endothelial cell migration at low concentrations and endothelian cell apoptosis at high concentrations. Induces maturation of dendritic cells and monocyte cell adhesion. Modulates endothelial cell responses by degrading HIF-1A through interaction with PSMA7.
Homo sapiens (taxid: 9606)

>sp|P31230|AIMP1_MOUSE Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Mus musculus GN=Aimp1 PE=1 SV=2

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/96 (54%), Positives = 67/96 (69%), Gaps = 1/96 (1%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
           MRGV S+AMVMCAS+P+KVEILAPP+ + PGD I  + +   PD  LNPKKKI+E + PD
Sbjct: 216 MRGVLSQAMVMCASSPEKVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPD 275

Query: 61  LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
           L TN    ATYKG  + V+  +G   +Q++AN  IK
Sbjct: 276 LHTNAECVATYKGAPFEVKG-KGVCRAQTMANSGIK 310

Non-catalytic component of the multisynthase complex. Stimulates the catalytic activity of cytoplasmic arginyl-tRNA synthase. Binds tRNA. Possesses inflammatory cytokine activity. Negatively regulates TGF-beta signaling through stabilization of SMURF2 by binding to SMURF2 and inhibiting its SMAD7-mediated degradation. Involved in glucose homeostasis through induction of glucagon secretion at low glucose levels. Promotes dermal fibroblast proliferation and wound repair. Regulates KDELR1-mediated retention of HSP90B1/gp96 in the endoplasmic reticulum. Plays a role in angiogenesis by inducing endothelial cell migration at low concentrations and endothelian cell apoptosis at high concentrations. Induces maturation of dendritic cells and monocyte cell adhesion. Modulates endothelial cell responses by degrading HIF-1A through interaction with PSMA7.

Mus musculus (taxid: 10090)

>sp|O54873|AIMP1_CRIGR Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Cricetulus griseus GN=AIMP1 PE=2 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 67/96 (69%), Gaps = 1/96 (1%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
           MRG+ S+AMVMCAS+P+KVEILAPP+ + PGD I  + +   PD  LNPKKKI+E + PD
Sbjct: 265 MRGILSQAMVMCASSPEKVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPD 324

Query: 61  LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
           L TN    ATYKG  + V+  +G   +Q++AN  IK
Sbjct: 325 LHTNAECVATYKGSPFEVKG-KGVCRAQTMANSGIK 359

Non-catalytic component of the multisynthase complex. Stimulates the catalytic activity of cytoplasmic arginyl-tRNA synthase. Binds tRNA. Possesses inflammatory cytokine activity. Negatively regulates TGF-beta signaling through stabilization of SMURF2 by binding to SMURF2 and inhibiting its SMAD7-mediated degradation. Involved in glucose homeostasis through induction of glucagon secretion at low glucose levels. Promotes dermal fibroblast proliferation and wound repair. Regulates KDELR1-mediated retention of HSP90B1/gp96 in the endoplasmic reticulum. Plays a role in angiogenesis by inducing endothelial cell migration at low concentrations and endothelian cell apoptosis at high concentrations. Induces maturation of dendritic cells and monocyte cell adhesion.

Cricetulus griseus (taxid: 10029)

>sp|Q20970|SYMC_CAEEL Methionine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=mrs-1 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 64/96 (66%), Gaps = 1/96 (1%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
           MRGV S AMVMCAS+PDKVEI+  P+ +KPG  +    YT  PD  LNPKKKI+ETVA D
Sbjct: 823 MRGVESRAMVMCASSPDKVEIMEVPADSKPGTPVVCPPYTHRPDEQLNPKKKIWETVAED 882

Query: 61  LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
           LK +    A +KG+   + + E  +T+ +L  V++K
Sbjct: 883 LKVSAEGFAEWKGQPLLIGS-ESKMTAPTLRGVHVK 917

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|Q4KM49|SYYC_RAT Tyrosine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Yars PE=2 SV=3

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 6/99 (6%)

Query: 1   MRGVTSEAMVMCASTPD---KVEILAPPSAAKPGDLIQVEGYTR-NPDPVLNPKKKIFET 56
           MRGV S+ M++CAS      +VE L PP+ + PG+ + V+GY +  PD  L PKKK+FE 
Sbjct: 431 MRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKPKKKVFEK 490

Query: 57  VAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNI 95
           +  D K +D   A +K   +  +   GFV+ +SL   NI
Sbjct: 491 LQADFKISDDCVAQWKQTNFMTKL--GFVSCKSLKGGNI 527

Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q7ZX51|SYYC_XENLA Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=yars PE=2 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 6/99 (6%)

Query: 1   MRGVTSEAMVMCASTP---DKVEILAPPSAAKPGDLIQVEGYTRN-PDPVLNPKKKIFET 56
           MRG+ S+ M++CAST     +VE L PPS + PG+ I +EGY    P+  L PKKK+FE 
Sbjct: 431 MRGIESQGMLLCASTEGEQKQVEPLDPPSGSAPGERIYIEGYENGEPEGELKPKKKVFEK 490

Query: 57  VAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNI 95
           +  D + +D   A +KGK +  +   G VT ++L   +I
Sbjct: 491 LQVDFRISDDLCAQWKGKNFLTKL--GSVTCKTLRGGSI 527

Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P46672|G4P1_YEAST GU4 nucleic-binding protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARC1 PE=1 SV=2

 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGY-TRNPDPVLNPKKKIFETVAP 59
           MRG+ S AMV+C S  DKVE + PP  +K GD +  EG+    P   LNPKKKI+E + P
Sbjct: 273 MRGIKSTAMVLCGSNDDKVEFVEPPKDSKAGDKVFFEGFGDEAPMKQLNPKKKIWEHLQP 332

Query: 60  DLKTNDSNQATYK 72
              TND  +  +K
Sbjct: 333 HFTTNDGLEVIFK 345

Binds specifically G4 quadruplex nucleic acid structures (these are four-stranded right-handed helices, stabilized by guanine base quartets). Binds to tRNA and functions as a cofactor for the methionyl- and glutamyl-tRNA synthetases.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6TGS6|SYYC_DANRE Tyrosine--tRNA ligase, cytoplasmic OS=Danio rerio GN=yars PE=2 SV=2

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 12/102 (11%)

Query: 1   MRGVTSEAMVMCAST---PDKVEILAPPSAAKPGDLIQVEGY-TRNPDPVLNPKKKIFET 56
           MRG+ S+AMV+CAS    P KVE L PP  +  GD + VEGY +  PD  L PKKK+FE 
Sbjct: 432 MRGIESQAMVLCASIEGEPRKVEPLDPPEGSAAGDRVYVEGYESGKPDDELKPKKKVFEK 491

Query: 57  VAPDLKTNDSNQATYKGKVWTVENVE---GFVTSQSLANVNI 95
           +  DLK +    A      W  +N+    G +T ++L   NI
Sbjct: 492 LQVDLKISGEFVAQ-----WKEQNLMTKLGRITCKTLKGGNI 528

Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q6DIJ1|SYYC_XENTR Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=yars PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 59/99 (59%), Gaps = 6/99 (6%)

Query: 1   MRGVTSEAMVMCASTP---DKVEILAPPSAAKPGDLIQVEGYTRN-PDPVLNPKKKIFET 56
           MRG+ S+ M++CAST     +VE L PP+ + PG+ I +EGY    P+  L PKKK+FE 
Sbjct: 431 MRGIESQGMLLCASTEGEQKQVEPLDPPTGSAPGERIYIEGYENGEPEGELKPKKKVFEK 490

Query: 57  VAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNI 95
           +  D + +D   A +KGK +  +   G VT ++L   +I
Sbjct: 491 LQVDFRISDDLCAQWKGKNFLTKL--GSVTCKTLRGGSI 527

Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q91WQ3|SYYC_MOUSE Tyrosine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Yars PE=2 SV=3

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 6/99 (6%)

Query: 1   MRGVTSEAMVMCASTPD---KVEILAPPSAAKPGDLIQVEGYTR-NPDPVLNPKKKIFET 56
           MRGV S+ M++CAS      +VE L PP+ + PG+ + V+GY +  PD  L PKKK+FE 
Sbjct: 431 MRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKPKKKVFEK 490

Query: 57  VAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNI 95
           +  D K ++   A +K   +  +   GFV+ +SL   NI
Sbjct: 491 LQADFKISEECIAQWKQTNFMTKL--GFVSCKSLKGGNI 527

Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
195151373	295	GL10404 [Drosophila persimilis] gi|19411	0.989	0.322	0.687	2e-29
346473491	311	hypothetical protein [Amblyomma maculatu	1.0	0.308	0.666	3e-29
198459808	295	GA20918 [Drosophila pseudoobscura pseudo	0.989	0.322	0.677	7e-29
194753660	292	GF12729 [Drosophila ananassae] gi|190620	0.989	0.325	0.656	1e-28
195425582	290	GK10745 [Drosophila willistoni] gi|19415	0.989	0.327	0.635	5e-28
24651924	323	CG8235 [Drosophila melanogaster] gi|2164	0.989	0.294	0.645	7e-28
195551634	313	GD15265 [Drosophila simulans] gi|1942019	0.989	0.303	0.645	7e-28
312378417	321	hypothetical protein AND_10052 [Anophele	0.989	0.295	0.666	8e-28
242009689	330	methionyl-tRNA synthetase, putative [Ped	0.989	0.287	0.677	8e-28
170039763	320	multisynthetase complex auxiliary compon	0.989	0.296	0.656	8e-28

>gi|195151373|ref|XP_002016622.1| GL10404 [Drosophila persimilis] gi|194110469|gb|EDW32512.1| GL10404 [Drosophila persimilis]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/96 (68%), Positives = 72/96 (75%), Gaps = 1/96 (1%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
           MRGVTSEAMVMCASTPDKVE+L+PP+ A PGDL+  EGYTR PD  LNPKKKIFET APD
Sbjct: 201 MRGVTSEAMVMCASTPDKVEVLSPPAGAVPGDLVHCEGYTRQPDAQLNPKKKIFETCAPD 260

Query: 61  LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
           L TN    A YKG    V   +G V SQSL NVN+K
Sbjct: 261 LMTNADLVACYKGSALHVPG-KGNVVSQSLKNVNVK 295

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346473491|gb|AEO36590.1| hypothetical protein [Amblyomma maculatum]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/96 (66%), Positives = 73/96 (76%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
           MRGVTSEAMVMCASTP+KVEILAPP  A PGD I  +GY   PD  LNPKKKIFE VAPD
Sbjct: 216 MRGVTSEAMVMCASTPEKVEILAPPPDALPGDRIVCDGYPGQPDVQLNPKKKIFEQVAPD 275

Query: 61  LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
           LKT+   +ATYKG  W V   +G+VT+++L NV IK
Sbjct: 276 LKTDSEKRATYKGHPWLVAGRQGYVTAETLCNVQIK 311

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198459808|ref|XP_001361502.2| GA20918 [Drosophila pseudoobscura pseudoobscura] gi|198136815|gb|EAL26080.2| GA20918 [Drosophila pseudoobscura pseudoobscura]

 Score =  130 bits (328), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 65/96 (67%), Positives = 72/96 (75%), Gaps = 1/96 (1%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
           MRGVTSEAMVMCASTP+KVE+L+PP+ A PGDL+  EGYTR PD  LNPKKKIFET APD
Sbjct: 201 MRGVTSEAMVMCASTPEKVEVLSPPAGAVPGDLVHCEGYTRQPDAQLNPKKKIFETCAPD 260

Query: 61  LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
           L TN    A YKG    V   +G V SQSL NVN+K
Sbjct: 261 LMTNADLVACYKGSALHVPG-KGNVVSQSLKNVNVK 295

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194753660|ref|XP_001959128.1| GF12729 [Drosophila ananassae] gi|190620426|gb|EDV35950.1| GF12729 [Drosophila ananassae]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/96 (65%), Positives = 73/96 (76%), Gaps = 1/96 (1%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
           MRGVTSEAMVMCASTP+KVE+L+PP+ A PGDL+  EGY R PD  LNPKKKIFE  APD
Sbjct: 198 MRGVTSEAMVMCASTPEKVEVLSPPAGAVPGDLVHCEGYPRQPDAQLNPKKKIFEACAPD 257

Query: 61  LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
           LKTND+  A YKG    V   +G V +Q+L NVN+K
Sbjct: 258 LKTNDALVACYKGAALHVPG-KGNVVAQTLKNVNVK 292

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195425582|ref|XP_002061076.1| GK10745 [Drosophila willistoni] gi|194157161|gb|EDW72062.1| GK10745 [Drosophila willistoni]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/96 (63%), Positives = 74/96 (77%), Gaps = 1/96 (1%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
           MRGVTSEAMVMCAST +KVE+L+PP+ + PGDL+  EGY R PD  LNPKKK+FET APD
Sbjct: 196 MRGVTSEAMVMCASTTEKVEVLSPPAGSGPGDLVHCEGYPRQPDAQLNPKKKVFETCAPD 255

Query: 61  LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
           LKTND+  A YKG V  V   +G + +Q+L NVN+K
Sbjct: 256 LKTNDALVACYKGAVLHVPG-KGNIVAQTLKNVNVK 290

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24651924|ref|NP_610426.2| CG8235 [Drosophila melanogaster] gi|21645574|gb|AAF59019.2| CG8235 [Drosophila melanogaster]

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 62/96 (64%), Positives = 72/96 (75%), Gaps = 1/96 (1%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
           MRGVTSEAMVMCASTP+KVE+L+PP+ A PGDL+  EGY R PD  LNPKKKIFE+ APD
Sbjct: 229 MRGVTSEAMVMCASTPEKVEVLSPPAGAVPGDLVHCEGYPRQPDAQLNPKKKIFESCAPD 288

Query: 61  LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
           LKTN    A YKG    V   +G V +Q+L NVN+K
Sbjct: 289 LKTNGELVACYKGAALHVPG-KGNVVAQTLKNVNVK 323

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195551634|ref|XP_002076271.1| GD15265 [Drosophila simulans] gi|194201920|gb|EDX15496.1| GD15265 [Drosophila simulans]

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 62/96 (64%), Positives = 72/96 (75%), Gaps = 1/96 (1%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
           MRGVTSEAMVMCASTP+KVE+L+PP+ A PGDL+  EGY R PD  LNPKKKIFE+ APD
Sbjct: 219 MRGVTSEAMVMCASTPEKVEVLSPPAGAVPGDLVHCEGYPRQPDAQLNPKKKIFESCAPD 278

Query: 61  LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
           LKTN    A YKG    V   +G V +Q+L NVN+K
Sbjct: 279 LKTNGDLVACYKGAALHVPG-KGNVVAQTLKNVNVK 313

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312378417|gb|EFR24998.1| hypothetical protein AND_10052 [Anopheles darlingi]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 64/96 (66%), Positives = 73/96 (76%), Gaps = 1/96 (1%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
           MRG+ SEAMVMCASTPDKVEILAPP  A PGDL+ VEG+ R PD V+NPKKKIFETVAPD
Sbjct: 227 MRGILSEAMVMCASTPDKVEILAPPEGAVPGDLVHVEGFPRVPDAVMNPKKKIFETVAPD 286

Query: 61  LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
           LKTN    A YK   + V   +G V +Q+LANV +K
Sbjct: 287 LKTNGQLVACYKEGTFVVPG-KGPVKAQTLANVQVK 321

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242009689|ref|XP_002425615.1| methionyl-tRNA synthetase, putative [Pediculus humanus corporis] gi|212509508|gb|EEB12877.1| methionyl-tRNA synthetase, putative [Pediculus humanus corporis]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 65/96 (67%), Positives = 75/96 (78%), Gaps = 1/96 (1%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
           MRGVTSEAMV+CASTP+KVE+L PP  + PGD I VEGY  +PDPVLNPKKKIFETVAPD
Sbjct: 236 MRGVTSEAMVLCASTPEKVEVLTPPPGSCPGDRITVEGYPGDPDPVLNPKKKIFETVAPD 295

Query: 61  LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
           LKT+    ATYKG  ++V   +G VT+QSL  V IK
Sbjct: 296 LKTDGKKIATYKGVPFSVTG-KGVVTTQSLIEVQIK 330

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170039763|ref|XP_001847693.1| multisynthetase complex auxiliary component p43 [Culex quinquefasciatus] gi|167863372|gb|EDS26755.1| multisynthetase complex auxiliary component p43 [Culex quinquefasciatus]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 63/96 (65%), Positives = 73/96 (76%), Gaps = 1/96 (1%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
           MRG+ SEAMVMCASTP+KVEILAPP  + PGDL+ VEGY R PD V+NPKKKIFETVAPD
Sbjct: 226 MRGILSEAMVMCASTPEKVEILAPPEGSVPGDLVHVEGYPRVPDAVMNPKKKIFETVAPD 285

Query: 61  LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
           L+TN    A YK   + V   +G V +QSL NVN+K
Sbjct: 286 LRTNGELVACYKDSTFVVPG-KGPVKAQSLKNVNVK 320

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
FB|FBgn0033351	323	CG8235 [Drosophila melanogaste	0.989	0.294	0.645	1.3e-27
UNIPROTKB|Q4G079	315	Aimp1 "Small inducible cytokin	0.989	0.301	0.552	1.3e-22
UNIPROTKB|Q3ZBX5	322	SCYE1 "Uncharacterized protein	0.989	0.295	0.552	2.1e-22
UNIPROTKB|I3LFC4	319	AIMP1 "Uncharacterized protein	0.989	0.297	0.541	2.6e-22
UNIPROTKB|Q12904	312	AIMP1 "Aminoacyl tRNA synthase	0.989	0.304	0.531	4.3e-22
UNIPROTKB|E2QXI3	321	AIMP1 "Uncharacterized protein	0.989	0.295	0.541	5.5e-22
MGI|MGI:102774	310	Aimp1 "aminoacyl tRNA syntheta	0.989	0.306	0.541	9e-22
UNIPROTKB|F1NLE7	318	AIMP1 "Uncharacterized protein	0.989	0.298	0.540	1.1e-21
ZFIN|ZDB-GENE-060825-144	315	aimp1 "aminoacyl tRNA syntheta	0.989	0.301	0.531	8e-21
UNIPROTKB|F1M679	269	F1M679 "Uncharacterized protei	0.979	0.349	0.479	1.2e-17

FB|FBgn0033351 CG8235 [Drosophila melanogaster (taxid:7227)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 62/96 (64%), Positives = 72/96 (75%)

Query:     1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
             MRGVTSEAMVMCASTP+KVE+L+PP+ A PGDL+  EGY R PD  LNPKKKIFE+ APD
Sbjct:   229 MRGVTSEAMVMCASTPEKVEVLSPPAGAVPGDLVHCEGYPRQPDAQLNPKKKIFESCAPD 288

Query:    61 LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
             LKTN    A YKG    V   +G V +Q+L NVN+K
Sbjct:   289 LKTNGELVACYKGAALHVPG-KGNVVAQTLKNVNVK 323

GO:0017101 "aminoacyl-tRNA synthetase multienzyme complex" evidence=ISS

GO:0000049 "tRNA binding" evidence=IEA

UNIPROTKB|Q4G079 Aimp1 "Small inducible cytokine subfamily E, member 1" [Rattus norvegicus (taxid:10116)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 53/96 (55%), Positives = 68/96 (70%)

Query:     1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
             MRGV S+AMVMCAS+P+KVEILAPP+ + PGD I  + +   PD  LNPKKKI+E + PD
Sbjct:   221 MRGVLSQAMVMCASSPEKVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPD 280

Query:    61 LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
             L TND   ATYKG  + V+  +G   +Q++AN  IK
Sbjct:   281 LHTNDECVATYKGAPFEVKG-KGVCRAQTMANSGIK 315

GO:0000049 "tRNA binding" evidence=IEA

UNIPROTKB|Q3ZBX5 SCYE1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 53/96 (55%), Positives = 68/96 (70%)

Query:     1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
             MRGV S+AMVMCAS+P+KVEILAPP+ + PGD I  + +   PD  LNPKKKI+E + PD
Sbjct:   228 MRGVVSQAMVMCASSPEKVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPD 287

Query:    61 LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
             L TND   ATYKG  + V+  +G   +Q++AN  IK
Sbjct:   288 LYTNDVCVATYKGAPFEVKG-KGVCRAQTMANSGIK 322

GO:0050900 "leukocyte migration" evidence=IEA

GO:0043498 "cell surface binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0017101 "aminoacyl-tRNA synthetase multienzyme complex" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0005125 "cytokine activity" evidence=IEA

GO:0001937 "negative regulation of endothelial cell proliferation" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

UNIPROTKB|I3LFC4 AIMP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 52/96 (54%), Positives = 67/96 (69%)

Query:     1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
             MRGV S+AMVMCAS+P+KVEILAPP  + PGD +  + +   PD  LNPKKKI+E + PD
Sbjct:   225 MRGVVSQAMVMCASSPEKVEILAPPHGSVPGDRVTFDAFPGEPDKELNPKKKIWEQIQPD 284

Query:    61 LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
             L TND   ATYKG  + V+  +G   +Q++AN  IK
Sbjct:   285 LYTNDDCVATYKGAPFEVKG-KGVCRAQTMANSGIK 319

GO:0050900 "leukocyte migration" evidence=IEA

GO:0043498 "cell surface binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0017101 "aminoacyl-tRNA synthetase multienzyme complex" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0005125 "cytokine activity" evidence=IEA

GO:0001937 "negative regulation of endothelial cell proliferation" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

UNIPROTKB|Q12904 AIMP1 "Aminoacyl tRNA synthase complex-interacting multifunctional protein 1" [Homo sapiens (taxid:9606)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 51/96 (53%), Positives = 68/96 (70%)

Query:     1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
             MRGV S+AMVMCAS+P+K+EILAPP+ + PGD I  + +   PD  LNPKKKI+E + PD
Sbjct:   218 MRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPD 277

Query:    61 LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
             L TND   ATYKG  + V+  +G   +Q+++N  IK
Sbjct:   278 LHTNDECVATYKGVPFEVKG-KGVCRAQTMSNSGIK 312

GO:0001525 "angiogenesis" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0030133 "transport vesicle" evidence=IEA

GO:0006935 "chemotaxis" evidence=TAS

GO:0007165 "signal transduction" evidence=NAS

GO:0009611 "response to wounding" evidence=TAS

GO:0001937 "negative regulation of endothelial cell proliferation" evidence=IDA

GO:0043498 "cell surface binding" evidence=IDA

GO:0000049 "tRNA binding" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0050900 "leukocyte migration" evidence=IDA

GO:0005125 "cytokine activity" evidence=ISS

GO:0007267 "cell-cell signaling" evidence=IDA

GO:0017101 "aminoacyl-tRNA synthetase multienzyme complex" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006418 "tRNA aminoacylation for protein translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E2QXI3 AIMP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 52/96 (54%), Positives = 67/96 (69%)

Query:     1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
             MRGV S+AMVMCAS+P+KVEILAPP+ + PGD I  + +   PD  LNPKKKI+E + PD
Sbjct:   227 MRGVLSQAMVMCASSPEKVEILAPPTGSVPGDKIVFDAFPGEPDKELNPKKKIWEQIQPD 286

Query:    61 LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
             L TND   ATYKG  + V+  +G   +Q++ N  IK
Sbjct:   287 LYTNDECVATYKGAPFEVKG-KGVCRAQTMTNSGIK 321

GO:0000049 "tRNA binding" evidence=IEA

MGI|MGI:102774 Aimp1 "aminoacyl tRNA synthetase complex-interacting multifunctional protein 1" [Mus musculus (taxid:10090)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 52/96 (54%), Positives = 67/96 (69%)

Query:     1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
             MRGV S+AMVMCAS+P+KVEILAPP+ + PGD I  + +   PD  LNPKKKI+E + PD
Sbjct:   216 MRGVLSQAMVMCASSPEKVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPD 275

Query:    61 LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
             L TN    ATYKG  + V+  +G   +Q++AN  IK
Sbjct:   276 LHTNAECVATYKGAPFEVKG-KGVCRAQTMANSGIK 310

GO:0000049 "tRNA binding" evidence=ISO

GO:0001525 "angiogenesis" evidence=IEA

GO:0001937 "negative regulation of endothelial cell proliferation" evidence=ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0005125 "cytokine activity" evidence=IDA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=ISO

GO:0017101 "aminoacyl-tRNA synthetase multienzyme complex" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043498 "cell surface binding" evidence=ISO

GO:0050900 "leukocyte migration" evidence=ISO;IDA

UNIPROTKB|F1NLE7 AIMP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 53/98 (54%), Positives = 69/98 (70%)

Query:     1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTR--NPDPVLNPKKKIFETVA 58
             MRGV S+AMVMCAS+P+KVEILAPP  A PGD I  EG+    +P+  LNPKKK++E + 
Sbjct:   222 MRGVVSQAMVMCASSPEKVEILAPPVGAVPGDRITFEGFPEIGDPEKELNPKKKMWEQIQ 281

Query:    59 PDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
             PDL TND   ATYKG  + V+  +G   ++++AN  IK
Sbjct:   282 PDLHTNDQCVATYKGVPFEVKG-KGVCRAETMANSGIK 318

GO:0000049 "tRNA binding" evidence=IEA

GO:0001937 "negative regulation of endothelial cell proliferation" evidence=IEA

GO:0005125 "cytokine activity" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0017101 "aminoacyl-tRNA synthetase multienzyme complex" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043498 "cell surface binding" evidence=IEA

GO:0050900 "leukocyte migration" evidence=IEA

ZFIN|ZDB-GENE-060825-144 aimp1 "aminoacyl tRNA synthetase complex-interacting multifunctional protein 1" [Danio rerio (taxid:7955)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 51/96 (53%), Positives = 65/96 (67%)

Query:     1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
             MRGV S+AMVMCAS+P+KVEIL PPS A  GD I  +G+   PD  LNPKKK++E V PD
Sbjct:   221 MRGVLSQAMVMCASSPEKVEILDPPSGAAAGDRITFQGFPGEPDKELNPKKKVWEQVQPD 280

Query:    61 LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
             L T+D   ATYKG  + V   +G   +Q+++   IK
Sbjct:   281 LLTDDQCVATYKGVAFEVTG-KGVCKAQTMSKSGIK 315

GO:0000049 "tRNA binding" evidence=IEA

UNIPROTKB|F1M679 F1M679 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 46/96 (47%), Positives = 64/96 (66%)

Query:     1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
             ++GV S+A+VMCAS+P+KVEILAPPS   P D I  + +   P   LNP+KKI+E + PD
Sbjct:   176 LQGVLSQAVVMCASSPEKVEILAPPSGFIPRDRITFDAFPGEPKE-LNPEKKIWEQIQPD 234

Query:    61 LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
             L TN     TYKG  + V+  +G   +Q++AN+ IK
Sbjct:   235 LHTNGEWVDTYKGTPFEVKG-KGVCRAQTMANIRIK 269

GO:0000049 "tRNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P31230	AIMP1_MOUSE	No assigned EC number	0.5416	0.9895	0.3064	yes	N/A
O54873	AIMP1_CRIGR	No assigned EC number	0.5312	0.9895	0.2646	yes	N/A
Q12904	AIMP1_HUMAN	No assigned EC number	0.5312	0.9895	0.3044	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	96
PLN02610	801	PLN02610, PLN02610, probable methionyl-tRNA synthe	7e-22
cd02799	105	cd02799, tRNA_bind_EMAP-II_like, tRNA-binding-doma	4e-12
pfam01588	95	pfam01588, tRNA_bind, Putative tRNA binding domain	4e-06
cd02153	99	cd02153, tRNA_bindingDomain, The tRNA binding doma	7e-06
cd02800	105	cd02800, tRNA_bind_EcMetRS_like, tRNA-binding-doma	5e-05
PRK00133	673	PRK00133, metG, methionyl-tRNA synthetase; Reviewe	0.004

>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase

 Score = 87.9 bits (218), Expect = 7e-22
 Identities = 43/98 (43%), Positives = 59/98 (60%), Gaps = 4/98 (4%)

Query: 1   MRGVTSEAMVMCASTPD--KVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVA 58
           MRG+ S+AMV+ AS  D  KVE++ PP +A  G+ +   G+   PD VLNPKKK++ET+ 
Sbjct: 706 MRGIKSQAMVLAASNSDHTKVELVEPPESAAVGERVTFPGFEGEPDDVLNPKKKVWETLQ 765

Query: 59  PDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
           PDL TN    A YK   +T     G     S+AN +I+
Sbjct: 766 PDLHTNSELVACYKDVPFTTS--AGVCKVASIANGSIR 801

Length = 801

>gnl|CDD|239198 cd02799, tRNA_bind_EMAP-II_like, tRNA-binding-domain-containing EMAP2-like proteins

 Score = 56.9 bits (138), Expect = 4e-12
 Identities = 21/36 (58%), Positives = 26/36 (72%), Gaps = 2/36 (5%)

Query: 1   MRGVTSEAMVMCASTPD--KVEILAPPSAAKPGDLI 34
           MRGV S+ MV+CAS  D  KVE+L PP  AKPG+ +
Sbjct: 69  MRGVKSQGMVLCASNADHEKVELLEPPEGAKPGERV 104

This family contains a diverse fraction of tRNA binding proteins, including Caenorhabditis elegans methionyl-tRNA synthetase (CeMetRS), human tyrosyl- tRNA synthetase (hTyrRS), Saccharomyces cerevisiae Arc1p, human p43 and EMAP2. CeMetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multiple activities during apoptosis, angiogenesis and inflammation and participates in malignant transformation. A EMAP-II-like cytokine also is released from hTyrRS upon cleavage. The active cytokine heptapeptide locates to this domain. Length = 105

>gnl|CDD|216589 pfam01588, tRNA_bind, Putative tRNA binding domain

 Score = 41.0 bits (97), Expect = 4e-06
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 1  MRGVTSEAMVMCAST--PDKVEILAPPSAAKPGD 32
          +RGV SE M++ A       V +L PP    PG 
Sbjct: 61 LRGVESEGMILSAEELDGGSVGLLEPPGDVPPGT 94

This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1), human tyrosyl-tRNA synthetase, and endothelial-monocyte activating polypeptide II. G4p1 binds specifically to tRNA form a complex with methionyl-tRNA synthetases. In human tyrosyl-tRNA synthetase this domain may direct tRNA to the active site of the enzyme. This domain may perform a common function in tRNA aminoacylation. Length = 95

>gnl|CDD|239066 cd02153, tRNA_bindingDomain, The tRNA binding domain is also known as the Myf domain in literature

 Score = 40.6 bits (96), Expect = 7e-06
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)

Query: 1  MRGVTSEAMVMCASTP----DKVEILAPPSAAKPGDLI 34
          +RGV SE M++ A         V IL  P  A  GD I
Sbjct: 62 LRGVESEGMLLSAEELGLEEGSVGILELPEDAPVGDRI 99

This domain is found in a diverse collection of tRNA binding proteins, including prokaryotic phenylalanyl tRNA synthetases (PheRS), methionyl-tRNA synthetases (MetRS), human tyrosyl-tRNA synthetase(hTyrRS), Saccharomyces cerevisiae Arc1p, Thermus thermophilus CsaA, Aquifex aeolicus Trbp111, human p43 and human EMAP-II. PheRS, MetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. The molecular chaperones Trbp111 and CsaA also contain this domain. CsaA has export related activities; Trbp111 is structure-specific recognizing the L-shape of the tRNA fold. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multiple activities during apoptosis, angiogenesis and inflammation and participates in malignant transformation. An EMAP-II-like cytokine is released from hTyrRS upon cleavage. The active cytokine heptapeptide locates to this domain. For homodimeric members of this group which include CsaA, Trbp111 and Escherichia coli MetRS this domain acts as a dimerization domain. Length = 99

>gnl|CDD|239199 cd02800, tRNA_bind_EcMetRS_like, tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins

 Score = 38.3 bits (90), Expect = 5e-05
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLI 34
           +RGV S+ M++ A    K+++L P    +PG  +
Sbjct: 71  LRGVESQGMILAAEDGGKLKLLTPDEEVEPGSRV 104

This family includes EcMetRS and Aquifex aeolicus Trbp111 (AaTrbp111). This domain has general tRNA binding properties. MetRS aminoacylates methionine transfer RNAs (tRNAmet). AaTrbp111 is structure-specific molecular chaperone recognizing the L-shape of the tRNA fold. AaTrbp111 plays a role in nuclear trafficking of tRNAs. The functional unit of EcMetRs and AaTrbp111 is a homodimer, this domain acts as the dimerization domain. Length = 105

>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed

 Score = 34.4 bits (80), Expect = 0.004
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 2   RGVTSEAMVMCASTPDK-VEILAPPSAAKPGDLIQ 35
            GV SE MV+ A      + +L P   AKPG  ++
Sbjct: 640 FGV-SEGMVLAAGPGGGDLFLLEPDEGAKPGMRVK 673

Length = 673

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	96
KOG2241|consensus	255		100.0
PLN02610	801	probable methionyl-tRNA synthetase	99.94
PRK10089	112	tRNA-binding protein; Provisional	99.03
TIGR02222	107	chap_CsaA export-related chaperone CsaA. This mode	99.02
cd02798	107	tRNA_bind_CsaA tRNA-binding-domain-containing CsaA	98.97
cd02800	105	tRNA_bind_EcMetRS_like tRNA-binding-domain-contain	98.81
cd02799	105	tRNA_bind_EMAP-II_like tRNA-binding-domain-contain	98.79
TIGR00399	137	metG_C_term methionyl-tRNA synthetase C-terminal r	98.79
PF01588	95	tRNA_bind: Putative tRNA binding domain; InterPro:	98.43
cd02153	99	tRNA_bindingDomain The tRNA binding domain is also	98.22
PRK12267	648	methionyl-tRNA synthetase; Reviewed	97.99
COG0073	123	ARC1 EMAP domain [General function prediction only	97.92
PRK00133	673	metG methionyl-tRNA synthetase; Reviewed	97.66
cd02796	103	tRNA_bind_bactPheRS tRNA-binding-domain-containing	97.63
TIGR00472	798	pheT_bact phenylalanyl-tRNA synthetase, beta subun	88.86
TIGR02306	341	RNA_lig_DRB0094 RNA ligase, DRB0094 family. The me	83.12
PRK00629	791	pheT phenylalanyl-tRNA synthetase subunit beta; Re	82.63

>KOG2241|consensus

Probab=100.00  E-value=2.3e-36  Score=227.38  Aligned_cols=94  Identities=55%  Similarity=0.932  Sum_probs=91.2

Q ss_pred             CCcccccceEEEEeCCCc--EEEEcCCCCCCCCcEEEecCCCCCCCCCCCccchhhhhhCCCcEECCCeeEEECCeEEEE
Q psy15304          1 MRGVTSEAMVMCASTPDK--VEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTV   78 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~~--v~ll~p~~~~~~G~rv~~~g~~~~p~~~l~~Kkk~we~v~~~l~t~~~g~a~~~~~~l~~   78 (96)
                      |||++||||||||+++++  ||+|.||.++.||+||+|+||+++|+++||||||+||++|+||+|+++|+|+|||.+|++
T Consensus       160 mRgv~S~gMvlcaSs~d~~~VE~l~pP~gs~pGdRv~fegfegePd~~LnPKKKiwE~iqpdl~t~~~~va~yKg~~~~~  239 (255)
T KOG2241|consen  160 MRGVKSQGMVLCASSPDKSVVEPLAPPAGSKPGDRVTFEGFEGEPDKELNPKKKIWEKIQPDLKTNEEGVATYKGAPFET  239 (255)
T ss_pred             ccccccceeEEecCCcccceeeeccCCCCCCCCCeeeecCCCCCcchhcChhhhhHHHhCCCcccccceEEEecCCceec
Confidence            899999999999998886  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccceEEeeecCCeeeC
Q psy15304         79 ENVEGFVTSQSLANVNIK   96 (96)
Q Consensus        79 ~~~~g~~~~~~l~~~~ik   96 (96)
                      +.  |.|+++||+|++||
T Consensus       240 ~~--G~~~a~ti~n~~Ik  255 (255)
T KOG2241|consen  240 KK--GVCTAQTISNGGIK  255 (255)
T ss_pred             cC--ceEEEeeccCCCCC
Confidence            73  99999999999997

>PLN02610 probable methionyl-tRNA synthetase

Probab=99.94  E-value=9.8e-27  Score=196.72  Aligned_cols=94  Identities=46%  Similarity=0.743  Sum_probs=89.3

Q ss_pred             CCcccccceEEEEeCCC--cEEEEcCCCCCCCCcEEEecCCCCCCCCCCCccchhhhhhCCCcEECCCeeEEECCeEEEE
Q psy15304          1 MRGVTSEAMVMCASTPD--KVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTV   78 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~--~v~ll~p~~~~~~G~rv~~~g~~~~p~~~l~~Kkk~we~v~~~l~t~~~g~a~~~~~~l~~   78 (96)
                      |||++||||||||++++  .++|+.||+++++|+||+|+|++++|++++|||+|+||+||++|+|+++|+|+|+|.+|++
T Consensus       706 lrGv~S~GMll~a~~~~~~~~~ll~~~~~~~~G~~v~~~~~~~~p~~~~~~k~k~~~~~~~~l~~~~~~~~~~~~~~~~~  785 (801)
T PLN02610        706 MRGIKSQAMVLAASNSDHTKVELVEPPESAAVGERVTFPGFEGEPDDVLNPKKKVWETLQPDLHTNSELVACYKDVPFTT  785 (801)
T ss_pred             cCCcccceeEEecccCCCCceEEEeCCCCCCCCCEEEeCCCCCCcccccCcccchHHHhCCCCEECCceEEEECCEEEEe
Confidence            79999999999998654  4999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ecccceEEeeecCCeeeC
Q psy15304         79 ENVEGFVTSQSLANVNIK   96 (96)
Q Consensus        79 ~~~~g~~~~~~l~~~~ik   96 (96)
                      +.  |+|++++|+||.||
T Consensus       786 ~~--g~~~~~~~~~~~i~  801 (801)
T PLN02610        786 SA--GVCKVASIANGSIR  801 (801)
T ss_pred             cC--CCeEcccCCCCEeC
Confidence            75  99999999999996

>PRK10089 tRNA-binding protein; Provisional

Probab=99.03  E-value=1.8e-10  Score=77.49  Aligned_cols=35  Identities=26%  Similarity=0.397  Sum_probs=31.8

Q ss_pred             CCcccccceEEEEeCCC-cEEEEcCCCCCCCCcEEE
Q psy15304          1 MRGVTSEAMVMCASTPD-KVEILAPPSAAKPGDLIQ   35 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~-~v~ll~p~~~~~~G~rv~   35 (96)
                      |||++||||||||++++ +++|+.|+.++++|+||.
T Consensus        77 ~~G~~S~gmil~~~~~~~~~~l~~p~~~~~~G~~i~  112 (112)
T PRK10089         77 IAGFMSEVLVLGFEDEDGEVVLLTPDRPVPNGVKLV  112 (112)
T ss_pred             ecCccccEEEEEEEcCCCeEEEecCCCCCCCcCCcC
Confidence            78999999999999766 599999999999999984

>TIGR02222 chap_CsaA export-related chaperone CsaA

Probab=99.02  E-value=2e-10  Score=76.79  Aligned_cols=35  Identities=26%  Similarity=0.416  Sum_probs=31.9

Q ss_pred             CCcccccceEEEEeCCC-cEEEEcCCCCCCCCcEEE
Q psy15304          1 MRGVTSEAMVMCASTPD-KVEILAPPSAAKPGDLIQ   35 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~-~v~ll~p~~~~~~G~rv~   35 (96)
                      |||++||||||||++++ ++.|+.|+.++++|+||+
T Consensus        72 ~~G~~S~gMil~~~~~~~~~~l~~~~~~~~~G~~v~  107 (107)
T TIGR02222        72 IAGFLSEVLVLGVIDEQGRVVLLQPDRPVPNGTKIA  107 (107)
T ss_pred             eCCccccEEEEEEECCCCeEEEecCCCCCCCcCCcC
Confidence            78999999999998765 599999999999999984

This model describes Bacillus subtilis CsaA, an export-related chaperone that interacts with the Sec system, and related proteins from a number of other bacteria and archaea. The crystal structure is known for the homodimer from Thermus thermophilus.

>cd02798 tRNA_bind_CsaA tRNA-binding-domain-containing CsaA-like proteins

Probab=98.97  E-value=4.2e-10  Score=75.06  Aligned_cols=34  Identities=29%  Similarity=0.474  Sum_probs=31.1

Q ss_pred             CCcccccceEEEEeCC-CcEEEEcCCCCCCCCcEE
Q psy15304          1 MRGVTSEAMVMCASTP-DKVEILAPPSAAKPGDLI   34 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~-~~v~ll~p~~~~~~G~rv   34 (96)
                      |||++||||||||+++ +.++++.|+.++++|+||
T Consensus        73 ~~G~~S~gm~l~~~~~~~~~~~~~~~~~~~~G~~i  107 (107)
T cd02798          73 IAGVLSEVLVLGADDEGGEVVLLVPDREVPNGAKV  107 (107)
T ss_pred             ecceeccEEEEEEEcCCCcEEEecCCCCCCCcCCC
Confidence            7899999999999876 469999999999999986

CsaA is a molecular chaperone with export related activities. CsaA has a putative tRNA binding activity. The functional unit of CsaA is a homodimer and this domain acts as a dimerization domain.

>cd02800 tRNA_bind_EcMetRS_like tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins

Probab=98.81  E-value=3.9e-09  Score=69.68  Aligned_cols=34  Identities=32%  Similarity=0.698  Sum_probs=31.7

Q ss_pred             CCcccccceEEEEeCCCcEEEEcCCCCCCCCcEE
Q psy15304          1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLI   34 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~~v~ll~p~~~~~~G~rv   34 (96)
                      |||+.|+|||||+.+++.++|+.||.++++|+||
T Consensus        71 ~~Gv~S~GMl~s~~~~~~~~l~~~~~~~~~G~~i  104 (105)
T cd02800          71 LRGVESQGMILAAEDGGKLKLLTPDEEVEPGSRV  104 (105)
T ss_pred             CCCeEeceEEEEecCCCeEEEEeCCCCCCCcCCc
Confidence            6899999999999887779999999999999997

This family includes EcMetRS and Aquifex aeolicus Trbp111 (AaTrbp111). This domain has general tRNA binding properties. MetRS aminoacylates methionine transfer RNAs (tRNAmet). AaTrbp111 is structure-specific molecular chaperone recognizing the L-shape of the tRNA fold. AaTrbp111 plays a role in nuclear trafficking of tRNAs. The functional unit of EcMetRs and AaTrbp111 is a homodimer, this domain acts as the dimerization domain.

>cd02799 tRNA_bind_EMAP-II_like tRNA-binding-domain-containing EMAP2-like proteins

Probab=98.79  E-value=4.8e-09  Score=69.32  Aligned_cols=35  Identities=60%  Similarity=1.065  Sum_probs=31.5

Q ss_pred             CCcccccceEEEEeCCC--cEEEEcCCCCCCCCcEEE
Q psy15304          1 MRGVTSEAMVMCASTPD--KVEILAPPSAAKPGDLIQ   35 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~--~v~ll~p~~~~~~G~rv~   35 (96)
                      |||+.||||+||+.+.+  ++.++.|+.++++|++|+
T Consensus        69 ~~G~~S~GMll~~~~~~~~~~~~~~~~~~~~~G~~i~  105 (105)
T cd02799          69 MRGVKSQGMVLCASNADHEKVELLEPPEGAKPGERVT  105 (105)
T ss_pred             ECCeeeceEEEEeccCCCCcEEEEECCCCCCCCCEeC
Confidence            68999999999998764  599999999999999983

This family contains a diverse fraction of tRNA binding proteins, including Caenorhabditis elegans methionyl-tRNA synthetase (CeMetRS), human tyrosyl- tRNA synthetase (hTyrRS), Saccharomyces cerevisiae Arc1p, human p43 and EMAP2. CeMetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multiple activities during apoptosis, angiogenesis and inflammation and participates in malignant transformation. A EMAP-II-like cytokine also is released from hTyrRS upon cleavage. The active cytokine heptapeptide locates to this domain.

>TIGR00399 metG_C_term methionyl-tRNA synthetase C-terminal region/beta chain

Probab=98.79  E-value=4.4e-09  Score=73.16  Aligned_cols=35  Identities=31%  Similarity=0.507  Sum_probs=32.1

Q ss_pred             CCcccccceEEEEeCCC-cEEEEcCCCCCCCCcEEE
Q psy15304          1 MRGVTSEAMVMCASTPD-KVEILAPPSAAKPGDLIQ   35 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~-~v~ll~p~~~~~~G~rv~   35 (96)
                      |||+.|||||||+.+++ .++|+.|+.++++|+||.
T Consensus       102 ~~Gv~S~GMlls~~~~~~~~~l~~~~~~~~~G~~i~  137 (137)
T TIGR00399       102 LFGVKSEGMILAAEDDGKVLFLLSPDQEAIAGERIK  137 (137)
T ss_pred             CCCeEeccEEEEEecCCCeEEEecCCCCCCCcCCcC
Confidence            78999999999999876 699999999999999983

The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model describes a region of the methionyl-tRNA synthetase that is present at the C-terminus of MetG in some species (E. coli, B. subtilis, Thermotoga maritima, Methanobacterium thermoautotrophicum), and as a separate beta chain in Aquifex aeolicus. It is absent in a number of other species (e.g. Mycoplasma genitalium, Mycobacterium tuberculosis), while Pyrococcus horikoshii has both a full length MetG and a second protein homologous to the beta chain only. Proteins hit by this model should called methionyl-tRNA synthetase beta chain if and only if the model metG hits a separate protein not also hit by this model.

>PF01588 tRNA_bind: Putative tRNA binding domain; InterPro: IPR002547 This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1) [], human tyrosyl-tRNA synthetase [], and endothelial-monocyte activating polypeptide II

Probab=98.43  E-value=1.4e-07  Score=61.35  Aligned_cols=33  Identities=42%  Similarity=0.659  Sum_probs=27.4

Q ss_pred             CCcccccceEEEEeC-C-CcEEEEcCCCCCCCCcE
Q psy15304          1 MRGVTSEAMVMCAST-P-DKVEILAPPSAAKPGDL   33 (96)
Q Consensus         1 mrGv~S~gMlL~a~~-~-~~v~ll~p~~~~~~G~r   33 (96)
                      |||+.||||||++++ . +...++.+|+++++|++
T Consensus        61 i~Gv~SeGMlls~~e~~~~~~~ll~~~~~~~~G~~   95 (95)
T PF01588_consen   61 IRGVESEGMLLSASELGDGSVGLLVLPDDAPPGED   95 (95)
T ss_dssp             ETTEEEESEE-EEECSTSSEEEEEEESSTS-TTSB
T ss_pred             EEeccCCEEEEEeeccCCCCEEEEECCCCCCCCCC
Confidence            689999999999996 3 46999999999999985

G4p1 binds specifically to tRNA form a complex with methionyl-tRNA synthetases []. In human tyrosyl-tRNA synthetase this domain may direct tRNA to the active site of the enzyme []. This domain may perform a common function in tRNA aminoacylation [].; GO: 0000049 tRNA binding; PDB: 3BU2_C 1PYB_A 2Q2I_A 2Q2H_A 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 2CWP_A ....

>cd02153 tRNA_bindingDomain The tRNA binding domain is also known as the Myf domain in literature

Probab=98.22  E-value=1.1e-06  Score=56.98  Aligned_cols=34  Identities=44%  Similarity=0.608  Sum_probs=29.3

Q ss_pred             CCcccccceEEEEeCC----CcEEEEcCCCCCCCCcEE
Q psy15304          1 MRGVTSEAMVMCASTP----DKVEILAPPSAAKPGDLI   34 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~----~~v~ll~p~~~~~~G~rv   34 (96)
                      |||+.|+|||+|+...    ++..++.++.++++|++|
T Consensus        62 ~~g~~S~GMl~s~~~~g~~~~~~~i~~~~~~~~~G~~~   99 (99)
T cd02153          62 LRGVESEGMLLSAEELGLEEGSVGILELPEDAPVGDRI   99 (99)
T ss_pred             CCCeecccEEeeccccCCCCCceEEEECCCCCCCCCcC
Confidence            6899999999999874    358899999889999875

This domain is found in a diverse collection of tRNA binding proteins, including prokaryotic phenylalanyl tRNA synthetases (PheRS), methionyl-tRNA synthetases (MetRS), human tyrosyl-tRNA synthetase(hTyrRS), Saccharomyces cerevisiae Arc1p, Thermus thermophilus CsaA, Aquifex aeolicus Trbp111, human p43 and human EMAP-II. PheRS, MetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. The molecular chaperones Trbp111 and CsaA also contain this domain. CsaA has export related activities; Trbp111 is structure-specific recognizing the L-shape of the tRNA fold. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multi

>PRK12267 methionyl-tRNA synthetase; Reviewed

Probab=97.99  E-value=4.7e-06  Score=69.49  Aligned_cols=35  Identities=20%  Similarity=0.391  Sum_probs=31.0

Q ss_pred             CCcccccceEEEEeCCCcEEEEcCCCCCCCCcEEE
Q psy15304          1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQ   35 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~~v~ll~p~~~~~~G~rv~   35 (96)
                      ||||+|||||||+.+++.+.++.++.++++|++|+
T Consensus       614 ~~Gv~S~gMl~s~~~~~~~~l~~~~~~~~~G~~~~  648 (648)
T PRK12267        614 LMGEESQGMILAAEDDGKLTLLTVDKEVPNGSKVK  648 (648)
T ss_pred             cCCcccceEEEEeccCCeEEEEeCCCCCCCcCCCC
Confidence            68999999999998755688999999999999874

>COG0073 ARC1 EMAP domain [General function prediction only]

Probab=97.92  E-value=7e-06  Score=55.96  Aligned_cols=34  Identities=35%  Similarity=0.563  Sum_probs=29.2

Q ss_pred             CCcccccceEEEEeCCC----cEEEEcCCCCCCCCcEE
Q psy15304          1 MRGVTSEAMVMCASTPD----KVEILAPPSAAKPGDLI   34 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~----~v~ll~p~~~~~~G~rv   34 (96)
                      |||++|+|||+++.+.+    +..++.+++++++|+++
T Consensus        86 lrG~~S~GMics~~e~~~~~~~~~il~~~~~~~~g~~~  123 (123)
T COG0073          86 LRGVESEGMLLSAEELGLSDENVGILTLDEGVPPGTKV  123 (123)
T ss_pred             ecCcccceEEEEcccCCCccccceEEeCCCCCCCCCCC
Confidence            68999999999998764    48899999999998763

>PRK00133 metG methionyl-tRNA synthetase; Reviewed

Probab=97.66  E-value=3.7e-05  Score=64.60  Aligned_cols=33  Identities=39%  Similarity=0.581  Sum_probs=28.8

Q ss_pred             CcccccceEEEEeCCC-cEEEEcCCCCCCCCcEEE
Q psy15304          2 RGVTSEAMVMCASTPD-KVEILAPPSAAKPGDLIQ   35 (96)
Q Consensus         2 rGv~S~gMlL~a~~~~-~v~ll~p~~~~~~G~rv~   35 (96)
                      ||+ |||||||+.+++ .+.++.++.++++|++|+
T Consensus       640 ~Gv-S~gMl~~~~~~~~~i~~l~~~~~~~~G~~~~  673 (673)
T PRK00133        640 FGV-SEGMVLAAGPGGGDLFLLEPDEGAKPGMRVK  673 (673)
T ss_pred             CCc-cceeEEEeecCCCcEEEecCCCCCCCCCcCC
Confidence            899 999999998654 599999888899999874

>cd02796 tRNA_bind_bactPheRS tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain

Probab=97.63  E-value=1.8e-05  Score=51.72  Aligned_cols=33  Identities=36%  Similarity=0.472  Sum_probs=25.7

Q ss_pred             CCcccccceEEEEeC----CCcEEEEcCCCCCCCCcE
Q psy15304          1 MRGVTSEAMVMCAST----PDKVEILAPPSAAKPGDL   33 (96)
Q Consensus         1 mrGv~S~gMlL~a~~----~~~v~ll~p~~~~~~G~r   33 (96)
                      |||++|||||+++..    +++..++..|+++++|+.
T Consensus        66 ~~G~~S~GMl~s~~elg~~~~~~gi~~l~~~~~~G~~  102 (103)
T cd02796          66 LRGVESEGMLCSAKELGLGEDSDGIIELPEDAPVGTD  102 (103)
T ss_pred             eCCcccchhCcchhHcCCCCCCCeEEECCCCCCCCCC
Confidence            689999999987753    234577888888888874

PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate the 2'OH of the terminal ribose of tRNA they belong functionally to class 1 aaRSs. This domain has general tRNA binding properties and is believed to direct tRNAphe to the active site of the enzyme.

>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial

Probab=88.86  E-value=0.14  Score=44.10  Aligned_cols=34  Identities=29%  Similarity=0.351  Sum_probs=21.5

Q ss_pred             CCcccccceEEEEeC----CCcEEEEcCCCCCCCCcEE
Q psy15304          1 MRGVTSEAMVMCAST----PDKVEILAPPSAAKPGDLI   34 (96)
Q Consensus         1 mrGv~S~gMlL~a~~----~~~v~ll~p~~~~~~G~rv   34 (96)
                      |||++|+||++++..    ++.--++..+.+.++|+.+
T Consensus       111 ~~Gv~S~GMlcs~~elg~~~~~~gi~~l~~~~~~G~~~  148 (798)
T TIGR00472       111 LRGVESEGMLCSEDELGLDEKSDGIIVLDEDAPLGTDI  148 (798)
T ss_pred             cCCeeechhcccHhHcCCCCCCCCEEEcCCCCCCCccH
Confidence            689999999765542    1112233345667888766

Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.

>TIGR02306 RNA_lig_DRB0094 RNA ligase, DRB0094 family

Probab=83.12  E-value=0.45  Score=37.75  Aligned_cols=15  Identities=20%  Similarity=0.443  Sum_probs=13.2

Q ss_pred             CCcccccceEEEEeC
Q psy15304          1 MRGVTSEAMVMCAST   15 (96)
Q Consensus         1 mrGv~S~gMlL~a~~   15 (96)
                      +||+.||||++....
T Consensus        82 lRG~~SqGMlcs~~~   96 (341)
T TIGR02306        82 LRGEISQGIALPTGA   96 (341)
T ss_pred             eccEEEccEEechhh
Confidence            689999999998765

The member of this family from Deinococcus radiodurans, a species that withstands and recovers from extensive radiation or dessication damage, is an apparent RNA ligase. It repairs RNA stand breaks in nicked DNA:RNA and RNA:RNA but not DNA:DNA duplexes. It has adenylyltransferase activity associated with the C-terminal domain. Related proteins also in this family are found in Streptomyces avermitilis MA-4680 and in bacteriophage 44RR2.8t. The phage example is unsurprising since one mechanism of host cell defense against phage is cleavage and inactivation of certain tRNA molecules. A fungal sequence from Neurospora crassa scores between trusted and noise cutofffs and may be similar in function.

>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed

Probab=82.63  E-value=0.52  Score=40.72  Aligned_cols=32  Identities=41%  Similarity=0.490  Sum_probs=19.6

Q ss_pred             CCcccccceEEEEeC------CCcEEEEcCCCCCCCCcEE
Q psy15304          1 MRGVTSEAMVMCAST------PDKVEILAPPSAAKPGDLI   34 (96)
Q Consensus         1 mrGv~S~gMlL~a~~------~~~v~ll~p~~~~~~G~rv   34 (96)
                      |||++|+||++++..      .+.+-+|  |+++++|+.+
T Consensus       109 ~~Gv~S~GMlcs~~ELGl~~~~~GI~~L--~~~~~~G~~~  146 (791)
T PRK00629        109 LRGVESEGMLCSASELGLSDDHDGIIEL--PEDAPVGTDA  146 (791)
T ss_pred             cCCeEEchhcccHhHcCCCcCCCCeEEC--CCCCCCCccH
Confidence            689999999755432      1234333  3456677655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	96
1fl0_A	171	Crystal Structure Of The Emap2RNA-Binding Domain Of		2e-23
1euj_A	166	A Novel Anti-Tumor Cytokine Contains A Rna-Binding		2e-23
1e7z_A	174	Crystal Structure Of The Emap2RNA BINDING DOMAIN OF		2e-23
1ntg_A	172	Crystal Structure Of The Emap Ii-Like Cytokine Rele		4e-11

>pdb|1FL0|A Chain A, Crystal Structure Of The Emap2RNA-Binding Domain Of The P43 Protein From Human Aminoacyl-Trna Synthetase Complex Length = 171

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 68/96 (70%), Gaps = 1/96 (1%)
Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
           MRGV S+AMVMCAS+P+K+EILAPP+ + PGD I  + +   PD  LNPKKKI+E + PD
Sbjct: 69  MRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPD 128
Query: 61  LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
           L TND   ATYKG  + V+  +G   +Q+++N  IK
Sbjct: 129 LHTNDECVATYKGVPFEVKG-KGVCRAQTMSNSGIK 163

>pdb|1EUJ|A Chain A, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif Present In Aminoacyl-Trna Synthetases Length = 166

Iteration: 1
 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 68/96 (70%), Gaps = 1/96 (1%)
Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
           MRGV S+AMVMCAS+P+K+EILAPP+ + PGD I  + +   PD  LNPKKKI+E + PD
Sbjct: 72  MRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPD 131
Query: 61  LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
           L TND   ATYKG  + V+  +G   +Q+++N  IK
Sbjct: 132 LHTNDECVATYKGVPFEVKG-KGVCRAQTMSNSGIK 166

>pdb|1E7Z|A Chain A, Crystal Structure Of The Emap2RNA BINDING DOMAIN OF THE P43 Protein From Human Aminoacyl-Trna Synthetase Complex Length = 174

Iteration: 1
 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 68/96 (70%), Gaps = 1/96 (1%)
Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
           MRGV S+AMVMCAS+P+K+EILAPP+ + PGD I  + +   PD  LNPKKKI+E + PD
Sbjct: 72  MRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPD 131
Query: 61  LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
           L TND   ATYKG  + V+  +G   +Q+++N  IK
Sbjct: 132 LHTNDECVATYKGVPFEVKG-KGVCRAQTMSNSGIK 166

>pdb|1NTG|A Chain A, Crystal Structure Of The Emap Ii-Like Cytokine Released From Human Tyrosyl-Trna Synthetase Length = 172

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Query: 1   MRGVTSEAMVMCASTPD---KVEILAPPSAAKPGDLIQVEGYTR-NPDPVLNPKKKIFET 56
           MRGV S+ M++CAS      +VE L PP+ + PG+ + V+GY +  PD  L PKKK+FE 
Sbjct: 73  MRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEK 132
Query: 57  VAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNI 95
           +  D K ++   A +K   +  +   G ++ +SL   NI
Sbjct: 133 LQADFKISEECIAQWKQTNFMTKL--GSISCKSLKGGNI 169

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	96
1fl0_A	171	Endothelial-monocyte activating polypeptide II; RN	1e-40
1ntg_A	172	Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligas	3e-34
1rqg_A	722	Methionyl-tRNA synthetase; translation, dimerizati	2e-09
1mkh_A	107	Metrs;, C-terminal domain of methionyl-tRNA synthe	4e-09
1pxf_A	111	Hypothetical protein YGJH; oligonucleotide-oligosa	8e-08
1pyb_A	111	Methionyl-tRNA synthetase beta subunit; oligonucle	4e-06
2cwp_A	112	Metrs related protein; structural GEN riken struct	1e-04

>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A Length = 171

 Score =  130 bits (329), Expect = 1e-40
 Identities = 51/96 (53%), Positives = 68/96 (70%), Gaps = 1/96 (1%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
           MRGV S+AMVMCAS+P+K+EILAPP+ + PGD I  + +   PD  LNPKKKI+E + PD
Sbjct: 69  MRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPD 128

Query: 61  LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
           L TND   ATYKG  + V+  +G   +Q+++N  IK
Sbjct: 129 LHTNDECVATYKGVPFEVKG-KGVCRAQTMSNSGIK 163

>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4 Length = 172

 Score =  114 bits (287), Expect = 3e-34
 Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 6/99 (6%)

Query: 1   MRGVTSEAMVMCASTPD---KVEILAPPSAAKPGDLIQVEGYTR-NPDPVLNPKKKIFET 56
           MRGV S+ M++CAS      +VE L PP+ + PG+ + V+GY +  PD  L PKKK+FE 
Sbjct: 73  MRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEK 132

Query: 57  VAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNI 95
           +  D K ++   A +K   +  +   G ++ +SL   NI
Sbjct: 133 LQADFKISEECIAQWKQTNFMTK--LGSISCKSLKGGNI 169

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722

 Score = 51.6 bits (124), Expect = 2e-09
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQ 35
           +RG+ S+ M++ A   ++V +L P    K G  ++
Sbjct: 688 LRGIGSQGMLLAADDGERVALLMPDKEVKLGAKVR 722

>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4 Length = 107

 Score = 48.3 bits (116), Expect = 4e-09
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLI 34
           +RG+ S+ M++ A   ++V +L P    K G  +
Sbjct: 73  LRGIGSQGMLLAADDGERVALLMPDKEVKLGAKV 106

>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} SCOP: b.40.4.4 PDB: 3ers_X Length = 111

 Score = 45.3 bits (108), Expect = 8e-08
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 1   MRGVTSEAMVMCASTPD--KVEILAPPSAAKPGDLI 34
           MRG TSE M++CA T D  +  +L P      G  +
Sbjct: 74  MRGETSECMLLCAETDDGSESVLLTPERMMPAGVRV 109

>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4 Length = 111

 Score = 40.6 bits (96), Expect = 4e-06
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLI 34
           + G+ S+ M++ AS  + + ++ P    K G  +
Sbjct: 77  IFGIESQGMILAASDGENLSVIVPDRDVKEGAKL 110

>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii} Length = 112

 Score = 37.2 bits (87), Expect = 1e-04
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 1   MRGVTSEAMVMCASTPD-KVEILAPPSAAKPGDLI 34
             GV S+ M++ A T D KV ++  P     G  +
Sbjct: 77  FSGVESQGMLILAETEDGKVYLIPVPEEVPVGARV 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	96
1fl0_A	171	Endothelial-monocyte activating polypeptide II; RN	100.0
1ntg_A	172	Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligas	99.97
3ers_X	118	TRNA-binding protein YGJH; oligonucleotide-oligosa	98.98
3g48_A	112	Chaperone CSAA; structural genomics, niaid structu	98.79
1pxf_A	111	Hypothetical protein YGJH; oligonucleotide-oligosa	98.79
1mkh_A	107	Metrs;, C-terminal domain of methionyl-tRNA synthe	98.78
1pyb_A	111	Methionyl-tRNA synthetase beta subunit; oligonucle	98.71
1gd7_A	109	CSAA protein; oligonucleotide-binding fold, functi	98.71
2q2i_A	116	AGR_C_4014P, secretion chaperone; beta barrel, OB	98.67
2nzh_A	113	Protein CSAA; beta barrel, oligonucleotide/oligosa	98.65
2e8g_A	241	Hypothetical protein PH0536; oligonucleotide/oligo	98.63
2cwp_A	112	Metrs related protein; structural GEN riken struct	98.61
2q2h_A	131	AGR_C_4014P, secretion chaperone, phage-display de	98.61
1rqg_A	722	Methionyl-tRNA synthetase; translation, dimerizati	97.93
3bu2_A	199	Putative tRNA-binding protein; structural genomics	97.65
1b7y_B	785	Phers, protein (phenylalanyl-tRNA synthetase); enz	95.76
2rhq_B	795	Phenylalanyl-tRNA synthetase beta chain; heterotet	95.11
3pco_B	795	Phenylalanyl-tRNA synthetase, beta chain; aminoacy	94.94

>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A

Probab=100.00  E-value=2.5e-33  Score=200.25  Aligned_cols=95  Identities=54%  Similarity=0.894  Sum_probs=90.7

Q ss_pred             CCcccccceEEEEeCCCcEEEEcCCCCCCCCcEEEecCCCCCCCCCCCccchhhhhhCCCcEECCCeeEEECCeEEEEec
Q psy15304          1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVEN   80 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~~v~ll~p~~~~~~G~rv~~~g~~~~p~~~l~~Kkk~we~v~~~l~t~~~g~a~~~~~~l~~~~   80 (96)
                      |||++||||||||.+++.+.++.+|+++++|++|.|+||+++|++++|||||+||++|++|+|+++|+|+|+|.||++++
T Consensus        69 lrGv~SeGMvLcs~~~~~~~il~~~~~~~~G~~v~~~g~~~~p~~~l~~kkk~~e~~~~~l~t~~~~va~~k~~~~~~~~  148 (171)
T 1fl0_A           69 MRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKG  148 (171)
T ss_dssp             SSSCEECCEECEEEETTEEEECBCCTTCCTTCBCCCTTSCCCCCSSCCTTTCTHHHHGGGEEECTTSBEEETTEECEETT
T ss_pred             EccEeccCEEEEEecCCCEEEEECCCCCCCCCEEEeCCCCCCCccccCchhhhHHhhCCCcEECCCeEEEECCEEEEECC
Confidence            79999999999999878899999999999999999999999999999999999999999999999999999999998865


Q ss_pred             ccceEEeeecCCeeeC
Q psy15304         81 VEGFVTSQSLANVNIK   96 (96)
Q Consensus        81 ~~g~~~~~~l~~~~ik   96 (96)
                      + |+|++++|+|+.||
T Consensus       149 ~-g~~~~~~l~~~~~~  163 (171)
T 1fl0_A          149 K-GVCRAQTMSNSGIK  163 (171)
T ss_dssp             T-EECBCSSCCSCEEC
T ss_pred             C-ccEEeeecCCCeEe
Confidence            4 99999999999986

>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4

Probab=99.97  E-value=1.2e-32  Score=196.76  Aligned_cols=94  Identities=39%  Similarity=0.689  Sum_probs=88.5

Q ss_pred             CCcccccceEEEEeCCC---cEEEEcCCCCCCCCcEEEecCC-CCCCCCCCCccchhhhhhCCCcEECCCeeEEECCeEE
Q psy15304          1 MRGVTSEAMVMCASTPD---KVEILAPPSAAKPGDLIQVEGY-TRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVW   76 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~---~v~ll~p~~~~~~G~rv~~~g~-~~~p~~~l~~Kkk~we~v~~~l~t~~~g~a~~~~~~l   76 (96)
                      |||++||||||||.+++   .++++.+|.++++|++|.|+|| +++|+++||||||+||++|++|+|+++|+|+|+|.+|
T Consensus        73 lrGv~S~GMvLcs~~e~~~~~v~il~~~~~~~~G~~v~~~g~~~~~p~~~l~~kkk~~e~~~~~l~t~~~~~a~~k~~~~  152 (172)
T 1ntg_A           73 MRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNF  152 (172)
T ss_dssp             ETTEEECCEECEEEEESSSEEEEECBCCBTCCTTCEEEETTCSSCCCCSSBCGGGCHHHHHHTTEEECTTSBEEETTEEE
T ss_pred             ecceecCCEEeEecccccCCCeEEEECCCCCCCCCEEEeCCcCCCCCccccCcchhhHHhhCCCcEECCCCEEEECCEEE
Confidence            69999999999998754   6899999999999999999999 7899999999999999999999999999999999999


Q ss_pred             EEecccceEEeeecCCeeeC
Q psy15304         77 TVENVEGFVTSQSLANVNIK   96 (96)
Q Consensus        77 ~~~~~~g~~~~~~l~~~~ik   96 (96)
                      +++.  |+|++++|+|+.||
T Consensus       153 ~~~~--g~~~~~~l~~~~i~  170 (172)
T 1ntg_A          153 MTKL--GSISCKSLKGGNIS  170 (172)
T ss_dssp             EETT--EECBCSSCTTCEEE
T ss_pred             EeCC--CCEEeeecCCCEEE
Confidence            8864  99999999999985

>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} SCOP: b.40.4.4

Probab=98.79  E-value=1.3e-09  Score=72.62  Aligned_cols=34  Identities=26%  Similarity=0.386  Sum_probs=31.0

Q ss_pred             CCcccccceEEEEeCCC-cEEEEcCCCCCCCCcEE
Q psy15304          1 MRGVTSEAMVMCASTPD-KVEILAPPSAAKPGDLI   34 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~-~v~ll~p~~~~~~G~rv   34 (96)
                      |||++||||||||++++ +++|+.|+.++++|+||
T Consensus        77 irGv~S~GMl~s~~~~~~~~~ll~p~~~~~~G~~i  111 (112)
T 3g48_A           77 VAGFKSEVLVLGGVPEAGDVVLLQPNMELPNGTKI  111 (112)
T ss_dssp             ETTEEECSEECEEEEETTEEEECCCSSCCCTTCBC
T ss_pred             ECCeecCcEEeEeecCCCCEEEEeCCCCCCCCCCc
Confidence            69999999999997654 69999999999999997

>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} PDB: 3ers_X

Probab=98.79  E-value=2.1e-09  Score=71.51  Aligned_cols=35  Identities=40%  Similarity=0.629  Sum_probs=30.6

Q ss_pred             CCcccccceEEEEeCCC--cEEEEcCCCCCCCCcEEE
Q psy15304          1 MRGVTSEAMVMCASTPD--KVEILAPPSAAKPGDLIQ   35 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~--~v~ll~p~~~~~~G~rv~   35 (96)
                      |||++||||||||.+++  .+.|+.|+.++++|+||.
T Consensus        74 lrGv~S~GMlL~a~~ed~~~~~l~~p~~~~~~G~~vv  110 (111)
T 1pxf_A           74 MRGETSECMLLCAETDDGSESVLLTPERMMPAGVRVV  110 (111)
T ss_dssp             BTTBCCCCCBCEEECTTSCCEEECCCSSCCCTTCBCC
T ss_pred             CCCEecceEEEEecccCCCcEEEEcCCCCCCCCCEec
Confidence            69999999999998754  488999998899999974

>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4

Probab=98.78  E-value=2.7e-09  Score=70.50  Aligned_cols=35  Identities=29%  Similarity=0.600  Sum_probs=30.8

Q ss_pred             CCcccccceEEEEeCCCcEEEEcCCCCCCCCcEEE
Q psy15304          1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQ   35 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~~v~ll~p~~~~~~G~rv~   35 (96)
                      |||++||||||||++.+.+.++.||+++++|+++.
T Consensus        73 lrGv~S~GMl~s~~~~~gi~~l~p~~~~~~G~~i~  107 (107)
T 1mkh_A           73 LRGIGSQGMLLAADDGERVALLMPDKEVKLGAKVR  107 (107)
T ss_dssp             C-CCEECCCBCEEECSSCEEECCCSSCCCTTCEEC
T ss_pred             EcCeeeccEEEEccCCCcEEEEeCCCCCCCCCCCC
Confidence            79999999999998666799999999999999973

>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4

Probab=98.71  E-value=5.4e-09  Score=69.43  Aligned_cols=35  Identities=23%  Similarity=0.524  Sum_probs=31.7

Q ss_pred             CCcccccceEEEEeCCCcEEEEcCCCCCCCCcEEE
Q psy15304          1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQ   35 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~~v~ll~p~~~~~~G~rv~   35 (96)
                      |||++||||||||++++++.++.+|+++++|+++.
T Consensus        77 lrGv~S~GMl~sa~e~~~~~il~~~~~~~~G~~v~  111 (111)
T 1pyb_A           77 IFGIESQGMILAASDGENLSVIVPDRDVKEGAKLS  111 (111)
T ss_dssp             TTSCCBSSEECEEECSSCEEEEEESSCCCTTEECC
T ss_pred             EccEeeccEEEEeccCCceEEEECCCCCCCCCCCC
Confidence            79999999999998766799999999999999863

>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4

Probab=98.71  E-value=3.8e-09  Score=70.01  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=30.8

Q ss_pred             CCcccccceEEEEeCCC-cEEEEcCCCCCCCCcEEE
Q psy15304          1 MRGVTSEAMVMCASTPD-KVEILAPPSAAKPGDLIQ   35 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~-~v~ll~p~~~~~~G~rv~   35 (96)
                      |||++||||||||++++ .+.++.||+++++|++++
T Consensus        74 lrGv~S~GMl~sa~~~~~~i~~l~~~~~~~~G~~i~  109 (109)
T 1gd7_A           74 VAGFLSEVLVLGVPDEAGRVVLLAPDREVPLGGKVF  109 (109)
T ss_dssp             ETTEEECSEECEEECTTSCEEEEEESSCCCTTCBCC
T ss_pred             eccEeecCEEEEeecCCCcEEEEeCCCCCCCCCCCC
Confidence            69999999999998653 699999999999999863

>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str}

Probab=98.67  E-value=6.3e-09  Score=69.63  Aligned_cols=35  Identities=11%  Similarity=0.172  Sum_probs=30.8

Q ss_pred             CCcccccceEEEEeCC-CcEEEEcCCCCCCCCcEEE
Q psy15304          1 MRGVTSEAMVMCASTP-DKVEILAPPSAAKPGDLIQ   35 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~-~~v~ll~p~~~~~~G~rv~   35 (96)
                      |||++||||||||+++ +.+.++.||+++++|++++
T Consensus        81 irGv~S~GMl~sa~~~~~~i~ll~p~~~~~~G~~i~  116 (116)
T 2q2i_A           81 IGPFRSEVLTLGFADANGDIVLAAVERPVPNGEKMC  116 (116)
T ss_dssp             ETTEEECCEECEEECTTSCEEEEEESSCCCTTCBCC
T ss_pred             ECCEEeCCEEEEeecCCCcEEEEeCCCCCCCCCCCC
Confidence            6999999999999865 4699999999999999863

>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A

Probab=98.65  E-value=7.6e-09  Score=68.97  Aligned_cols=35  Identities=26%  Similarity=0.392  Sum_probs=30.8

Q ss_pred             CCcccccceEEEEeCC-CcEEEEcCCCCCCCCcEEE
Q psy15304          1 MRGVTSEAMVMCASTP-DKVEILAPPSAAKPGDLIQ   35 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~-~~v~ll~p~~~~~~G~rv~   35 (96)
                      |||++||||||||+++ +.+.++.+|.++++|++++
T Consensus        78 irGv~S~GMl~sa~~~~~~i~ll~~~~~~~~G~~i~  113 (113)
T 2nzh_A           78 IAGFKSEVLVLGGIPGQGDVVLLQPDQPVPNGTKIG  113 (113)
T ss_dssp             ETTEEECSEECEEEEETTEEEEEEESSCCCTTCEEC
T ss_pred             ECCEEeCCEEEEeecCCCCEEEEECCCCCCCCCCCC
Confidence            6999999999999764 4699999999999999974

>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii}

Probab=98.63  E-value=1.7e-09  Score=80.58  Aligned_cols=49  Identities=22%  Similarity=0.308  Sum_probs=35.1

Q ss_pred             CCcccccceEEEEeCCCcEEEEcCCCCCCCCcEEEecCCCCCCCCCCCccchhhhhhCC
Q psy15304          1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAP   59 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~~v~ll~p~~~~~~G~rv~~~g~~~~p~~~l~~Kkk~we~v~~   59 (96)
                      |||++|||||+|++.    .+...+    .|+.+.+.  ++.|..+||||||+||+++.
T Consensus       192 lrGv~SeGMlcsa~E----gl~~~~----~G~I~~Lp--~~~p~~~lnpkkk~~e~~~~  240 (241)
T 2e8g_A          192 FFGIVSEGMFLGAGE----GVLKNV----KGEIGGLP--KGIPLEALNETRNAVEAFLK  240 (241)
T ss_dssp             ETTEEECCEECEETT----EECCBC----BSCTTSCC--BSCCGGGGHHHHHHHHHHHC
T ss_pred             cCCcccCcEEeECcc----CCCCCC----CCcEEECC--CCCchhhcCchhhHHHHHhc
Confidence            699999999999974    233322    24222222  46788999999999999864

>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii}

Probab=98.61  E-value=1.2e-08  Score=67.87  Aligned_cols=35  Identities=31%  Similarity=0.478  Sum_probs=30.9

Q ss_pred             CCcccccceEEEEeCCC-cEEEEcCCCCCCCCcEEE
Q psy15304          1 MRGVTSEAMVMCASTPD-KVEILAPPSAAKPGDLIQ   35 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~-~v~ll~p~~~~~~G~rv~   35 (96)
                      |||++||||||||++++ .+.++.+|+++++|+++.
T Consensus        77 lrGv~S~GMl~sa~~~~~~~~il~~~~~~~~G~~i~  112 (112)
T 2cwp_A           77 FSGVESQGMLILAETEDGKVYLIPVPEEVPVGARVW  112 (112)
T ss_dssp             ETTEEECSEECCEECTTSCEECCBCCTTSCTTCEEC
T ss_pred             eCCEecccEEEEeecCCCcEEEEECCCCCCCCCCCC
Confidence            69999999999998644 689999999999999973

>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str}

Probab=98.61  E-value=1.1e-08  Score=69.83  Aligned_cols=35  Identities=11%  Similarity=0.172  Sum_probs=30.8

Q ss_pred             CCcccccceEEEEeCC-CcEEEEcCCCCCCCCcEEE
Q psy15304          1 MRGVTSEAMVMCASTP-DKVEILAPPSAAKPGDLIQ   35 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~-~~v~ll~p~~~~~~G~rv~   35 (96)
                      |||++||||||||+++ +.+.+|.||+++++|++++
T Consensus        96 irGv~SeGMl~sa~~~~~gi~lL~p~~~~~~G~~i~  131 (131)
T 2q2h_A           96 IGPFRSEVLTLGFADANGDIVLAAVERPVPNGEKMC  131 (131)
T ss_dssp             ETTEEECCEECEEECTTSCEEEEEESSCCCTTCBCC
T ss_pred             ECCEEeCcEEEEeecCCCcEEEEeCCCCCCCCCCCC
Confidence            6999999999999865 4699999999999999863

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1

Probab=97.93  E-value=1.3e-06  Score=72.62  Aligned_cols=35  Identities=29%  Similarity=0.600  Sum_probs=0.0

Q ss_pred             CCcccccceEEEEeCCCcEEEEcCCCCCCCCcEEE
Q psy15304          1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQ   35 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~~v~ll~p~~~~~~G~rv~   35 (96)
                      |||++||||||||++++.+.+|.|+.++++|++|.
T Consensus       688 ~~g~~S~gM~~~~~~~~~i~~l~~~~~~~~G~~~~  722 (722)
T 1rqg_A          688 LRGIGSQGMLLAADDGERVALLMPDKEVKLGAKVR  722 (722)
T ss_dssp             -----------------------------------
T ss_pred             eCCcccCeEEEEeeCCCcEEEeCCCCCCCCCCCCC
Confidence            79999999999997666799999988999999874

>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp}

Probab=97.65  E-value=3.5e-06  Score=61.06  Aligned_cols=34  Identities=21%  Similarity=0.328  Sum_probs=25.2

Q ss_pred             CCcccccceEEEEeC----C--CcEEEEcCCCCCCCCcEE
Q psy15304          1 MRGVTSEAMVMCAST----P--DKVEILAPPSAAKPGDLI   34 (96)
Q Consensus         1 mrGv~S~gMlL~a~~----~--~~v~ll~p~~~~~~G~rv   34 (96)
                      |||++|||||++++.    +  ++..++..|+++++|+++
T Consensus       157 lrGv~S~GMlcSa~ELGl~~~~~~~gI~~l~~~~~~G~~v  196 (199)
T 3bu2_A          157 LRGVASSGMICSMKELGLPNAPQEKGIMVLSDDYTVGQSF  196 (199)
T ss_dssp             ETTEEEESEECCTTTTTCSSCBSCCSCCEECTTSCTTSBS
T ss_pred             EcCceeccEEeehhhcCCCcccCCCeEEECCCCCCCCCcc
Confidence            699999999988863    2  233444557789999987

>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*

Probab=95.76  E-value=0.0012  Score=55.68  Aligned_cols=34  Identities=26%  Similarity=0.378  Sum_probs=25.1

Q ss_pred             CCcccccceEEEEeC----CCcEEEEcCCCCC-CCCcEE
Q psy15304          1 MRGVTSEAMVMCAST----PDKVEILAPPSAA-KPGDLI   34 (96)
Q Consensus         1 mrGv~S~gMlL~a~~----~~~v~ll~p~~~~-~~G~rv   34 (96)
                      |||++|||||++++.    +++..++..|+++ ++|+++
T Consensus       108 lrGv~S~GMlcs~~eLgl~~~~~gi~~l~~~~~~~G~~~  146 (785)
T 1b7y_B          108 IQGVRSFGMALSPRELGVGEYGGGLLEFPEDALPPGTPL  146 (785)
T ss_dssp             CSSSEECSEECCHHHHTSCSCCSSCCCBCTTSSCTTCBG
T ss_pred             eccccccceeeeHHHhCCCCCCCceEECccccccCCCcH
Confidence            799999999977742    2333456667778 899988

>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*

Probab=95.11  E-value=0.0018  Score=54.51  Aligned_cols=34  Identities=26%  Similarity=0.459  Sum_probs=24.4

Q ss_pred             CCcccccceEEEEeC----CC------cEEEEcCCCCCCCCcEE
Q psy15304          1 MRGVTSEAMVMCAST----PD------KVEILAPPSAAKPGDLI   34 (96)
Q Consensus         1 mrGv~S~gMlL~a~~----~~------~v~ll~p~~~~~~G~rv   34 (96)
                      |||++|+|||+++..    ++      .--++..|+++++|+.+
T Consensus       106 lrG~~S~GMlcs~~elGl~~~~~~~~~~~gi~~l~~~~~~G~~~  149 (795)
T 2rhq_B          106 LRGERSEGMICSLQEIGISSNVVPKAYENGIFVFPTEVEPGTDA  149 (795)
T ss_dssp             ETTEEECSEECCSGGGTCCGGGSCHHHHTSCCBCSSCCCTTSBH
T ss_pred             ecCccccceeeeHHHcCCCcccccccCCCeEEECCCCCcCCCch
Confidence            699999999987752    22      12345557788999877

>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}

Probab=94.94  E-value=0.0031  Score=53.15  Aligned_cols=34  Identities=35%  Similarity=0.444  Sum_probs=22.6

Q ss_pred             CCcccccceEEEEeC----CCcEEEEcCCCCCCCCcEE
Q psy15304          1 MRGVTSEAMVMCAST----PDKVEILAPPSAAKPGDLI   34 (96)
Q Consensus         1 mrGv~S~gMlL~a~~----~~~v~ll~p~~~~~~G~rv   34 (96)
                      |||++|+|||+++..    +++--++..|+++++|+.+
T Consensus       110 ~rG~~S~GMlcs~~elgl~~~~~gi~~l~~~~~~G~~~  147 (795)
T 3pco_B          110 LRGEPSEGMLCSFSELGISDDHSGIIELPADAPIGTDI  147 (795)
T ss_dssp             SSSSEESSEECCSGGGTSCCCCSSCCEECSSCCTTSBH
T ss_pred             cCCeecCcEecchhhcCCCCCCCeEEECCccccCCCCH
Confidence            799999999766652    2221233335678999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	96
d1fl0a_	164	b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId	3e-30
d1ntga_	171	b.40.4.4 (A:) C-terminal domain of metazoan tyrosy	7e-23
d1mkha_	107	b.40.4.4 (A:) C-terminal domain of methionyl-tRNA	6e-08
d1pyba_	107	b.40.4.4 (A:) Structure-specific tRNA-binding prot	4e-07
d1pxfa_	111	b.40.4.4 (A:) Structure-specific tRNA-binding prot	2e-05
d1gd7a_	109	b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermo	3e-05

>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: EMAP II
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 3e-30
 Identities = 51/96 (53%), Positives = 67/96 (69%), Gaps = 1/96 (1%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
           MRGV S+AMVMCAS+P+K+EILAPP+ + PGD I  + +   PD  LNPKKKI+E + PD
Sbjct: 69  MRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPD 128

Query: 61  LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
           L TND   ATYKG  + V   +G   +Q+++N  IK
Sbjct: 129 LHTNDECVATYKGVPFEV-KGKGVCRAQTMSNSGIK 163

>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.3 bits (208), Expect = 7e-23
 Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 6/99 (6%)

Query: 1   MRGVTSEAMVMCASTPD---KVEILAPPSAAKPGDLIQVEGYTRN-PDPVLNPKKKIFET 56
           MRGV S+ M++CAS      +VE L PP+ + PG+ + V+GY +  PD  L PKKK+FE 
Sbjct: 72  MRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEK 131

Query: 57  VAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNI 95
           +  D K ++   A +K   +  +   G ++ +SL   NI
Sbjct: 132 LQADFKISEECIAQWKQTNFMTKL--GSISCKSLKGGNI 168

>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 107

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: C-terminal domain of methionyl-tRNA synthetase, MetRS-CD
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

 Score = 44.2 bits (104), Expect = 6e-08
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQ 35
           +RG+ S+ M++ A   ++V +L P    K G  ++
Sbjct: 73  LRGIGSQGMLLAADDGERVALLMPDKEVKLGAKVR 107

>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Aquifex aeolicus [TaxId: 63363]} Length = 107

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: Structure-specific tRNA-binding protein TRBP111
species: Aquifex aeolicus [TaxId: 63363]

 Score = 42.3 bits (99), Expect = 4e-07
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLI 34
           + G+ S+ M++ AS  + + ++ P    K G  +
Sbjct: 73  IFGIESQGMILAASDGENLSVIVPDRDVKEGAKL 106

>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Escherichia coli [TaxId: 562]} Length = 111

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: Structure-specific tRNA-binding protein TRBP111
species: Escherichia coli [TaxId: 562]

 Score = 38.4 bits (89), Expect = 2e-05
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 1   MRGVTSEAMVMCASTPD--KVEILAPPSAAKPGD 32
           MRG TSE M++CA T D  +  +L P      G 
Sbjct: 74  MRGETSECMLLCAETDDGSESVLLTPERMMPAGV 107

>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus [TaxId: 274]} Length = 109

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: TRBP111 homolog CsaA
species: Thermus thermophilus [TaxId: 274]

 Score = 37.7 bits (87), Expect = 3e-05
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 1   MRGVTSEAMVMCASTPD-KVEILAPPSAAKPGDLI 34
           + G  SE +V+       +V +LAP      G  +
Sbjct: 74  VAGFLSEVLVLGVPDEAGRVVLLAPDREVPLGGKV 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	96
d1fl0a_	164	EMAP II {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1ntga_	171	C-terminal domain of metazoan tyrosyl-tRNA synthet	99.93
d1gd7a_	109	TRBP111 homolog CsaA {Thermus thermophilus [TaxId:	98.96
d1pyba_	107	Structure-specific tRNA-binding protein TRBP111 {A	98.94
d1mkha_	107	C-terminal domain of methionyl-tRNA synthetase, Me	98.93
d1pxfa_	111	Structure-specific tRNA-binding protein TRBP111 {E	98.69
d1jjcb3	113	Domain B2 of PheRS-beta, PheT {Thermus thermophilu	96.78

>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: EMAP II
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.6e-29  Score=174.42  Aligned_cols=95  Identities=54%  Similarity=0.894  Sum_probs=91.3

Q ss_pred             CCcccccceEEEEeCCCcEEEEcCCCCCCCCcEEEecCCCCCCCCCCCccchhhhhhCCCcEECCCeeEEECCeEEEEec
Q psy15304          1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVEN   80 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~~v~ll~p~~~~~~G~rv~~~g~~~~p~~~l~~Kkk~we~v~~~l~t~~~g~a~~~~~~l~~~~   80 (96)
                      |||++||||||||++.+.+.++.+|+++++|+||.|+|++.+|++++++|+++|+.++++|++|++++++|+|.++.+++
T Consensus        69 irGv~SeGMllsa~~~~~~~ll~~p~~~~~G~~v~~~~~~~~~~~~l~~k~~~~~~i~~~l~~n~~~~~~~~g~~~~~~~  148 (164)
T d1fl0a_          69 MRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKG  148 (164)
T ss_dssp             SSSCEECCEECEEEETTEEEECBCCTTCCTTCBCCCTTSCCCCCSSCCTTTCTHHHHGGGEEECTTSBEEETTEECEETT
T ss_pred             cCceEcceEEEeeeCCCccEEEeCCCCCCCCCEEEecccCCCCchhcCcccchhHhhccCcEECCCCEEEECCEEeeecc
Confidence            79999999999999888999999999999999999999999999999999999999999999999999999999998875


Q ss_pred             ccceEEeeecCCeeeC
Q psy15304         81 VEGFVTSQSLANVNIK   96 (96)
Q Consensus        81 ~~g~~~~~~l~~~~ik   96 (96)
                      + |+|++++|.|+.||
T Consensus       149 ~-g~~~~~~l~~~~Ik  163 (164)
T d1fl0a_         149 K-GVCRAQTMSNSGIK  163 (164)
T ss_dssp             T-EECBCSSCCSCEEC
T ss_pred             C-CCEEcccCCCCeee
Confidence            4 99999999999997

>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.2e-26  Score=162.09  Aligned_cols=94  Identities=39%  Similarity=0.689  Sum_probs=86.7

Q ss_pred             CCcccccceEEEEeCCC---cEEEEcCCCCCCCCcEEEecCCC-CCCCCCCCccchhhhhhCCCcEECCCeeEEECCeEE
Q psy15304          1 MRGVTSEAMVMCASTPD---KVEILAPPSAAKPGDLIQVEGYT-RNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVW   76 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~---~v~ll~p~~~~~~G~rv~~~g~~-~~p~~~l~~Kkk~we~v~~~l~t~~~g~a~~~~~~l   76 (96)
                      |||++||||||||+..+   .++++.+|.++++|+||+|+|++ ..|+..+++|+|+|+.++++|.|++||+|+|++.+|
T Consensus        72 irGv~SeGMl~s~~e~g~~~~~~~~~~p~~~~~G~~v~~~~~~~~~~~~~~~~k~k~~~~~~~~l~v~~d~~a~~k~~~~  151 (171)
T d1ntga_          72 MRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNF  151 (171)
T ss_dssp             ETTEEECCEECEEEEESSSEEEEECBCCBTCCTTCEEEETTCSSCCCCSSBCGGGCHHHHHHTTEEECTTSBEEETTEEE
T ss_pred             cCccccceEEeecccCCCccceeeecCCCCCCCcCEEEECCccccCcccccCcccchHHHhcccccCCCCCEEEECCeee
Confidence            79999999999998543   58899999999999999999996 678899999999999999999999999999999999


Q ss_pred             EEecccceEEeeecCCeeeC
Q psy15304         77 TVENVEGFVTSQSLANVNIK   96 (96)
Q Consensus        77 ~~~~~~g~~~~~~l~~~~ik   96 (96)
                      .++.  |+|+++++.|+.|+
T Consensus       152 ~t~~--g~~~~~~i~~~~iS  169 (171)
T d1ntga_         152 MTKL--GSISCKSLKGGNIS  169 (171)
T ss_dssp             EETT--EECBCSSCTTCEEE
T ss_pred             ecCC--CCEEeccCCCCEEe
Confidence            9863  99999999999985

>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: TRBP111 homolog CsaA
species: Thermus thermophilus [TaxId: 274]

Probab=98.96  E-value=8.3e-11  Score=76.02  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=31.7

Q ss_pred             CCcccccceEEEEeCCC-cEEEEcCCCCCCCCcEEE
Q psy15304          1 MRGVTSEAMVMCASTPD-KVEILAPPSAAKPGDLIQ   35 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~-~v~ll~p~~~~~~G~rv~   35 (96)
                      |||++||||||||++++ .+.++.|+.++++|+||+
T Consensus        74 irGv~SeGMiL~~~~~~~~~~ll~p~~~~~~G~ri~  109 (109)
T d1gd7a_          74 VAGFLSEVLVLGVPDEAGRVVLLAPDREVPLGGKVF  109 (109)
T ss_dssp             ETTEEECSEECEEECTTSCEEEEEESSCCCTTCBCC
T ss_pred             EccccCCEEEEEEEcCCCcEEEEeCCCCCCCCCccC
Confidence            69999999999998765 699999999999999984

>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Aquifex aeolicus [TaxId: 63363]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: Structure-specific tRNA-binding protein TRBP111
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.94  E-value=1.7e-10  Score=74.70  Aligned_cols=34  Identities=24%  Similarity=0.537  Sum_probs=32.1

Q ss_pred             CCcccccceEEEEeCCCcEEEEcCCCCCCCCcEE
Q psy15304          1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLI   34 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~~v~ll~p~~~~~~G~rv   34 (96)
                      |||++||||||||++++++.++.|+.++++|+||
T Consensus        73 irG~~SegMil~~~d~~~~~ll~p~~~~~~G~~i  106 (107)
T d1pyba_          73 IFGIESQGMILAASDGENLSVIVPDRDVKEGAKL  106 (107)
T ss_dssp             TTSCCBSSEECEEECSSCEEEEEESSCCCTTEEC
T ss_pred             ECCeeeeEEEEEEEcCCceEEEeCCCCCCCCCcc
Confidence            7999999999999988899999999999999997

>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: C-terminal domain of methionyl-tRNA synthetase, MetRS-CD
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.93  E-value=2.1e-10  Score=74.24  Aligned_cols=35  Identities=29%  Similarity=0.600  Sum_probs=31.9

Q ss_pred             CCcccccceEEEEeCCCcEEEEcCCCCCCCCcEEE
Q psy15304          1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQ   35 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~~v~ll~p~~~~~~G~rv~   35 (96)
                      |||++||||||||++++++.++.||.++++|++|+
T Consensus        73 irGv~SeGMl~s~~e~~~~~ll~~~~~~~~G~~ir  107 (107)
T d1mkha_          73 LRGIGSQGMLLAADDGERVALLMPDKEVKLGAKVR  107 (107)
T ss_dssp             C-CCEECCCBCEEECSSCEEECCCSSCCCTTCEEC
T ss_pred             CCCccCCEEEEEeecCCcEEEEECCCCCCCCCccC
Confidence            79999999999999888899999999999999984

>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: Structure-specific tRNA-binding protein TRBP111
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=3e-09  Score=69.05  Aligned_cols=35  Identities=40%  Similarity=0.629  Sum_probs=29.8

Q ss_pred             CCcccccceEEEEeCCC--cEEEEcCCCCCCCCcEEE
Q psy15304          1 MRGVTSEAMVMCASTPD--KVEILAPPSAAKPGDLIQ   35 (96)
Q Consensus         1 mrGv~S~gMlL~a~~~~--~v~ll~p~~~~~~G~rv~   35 (96)
                      |||+.||||||||.+++  .+.++.|+.++++|+||.
T Consensus        74 irGv~SeGMil~~~~~d~~~~~ll~p~~~~~~G~rv~  110 (111)
T d1pxfa_          74 MRGETSECMLLCAETDDGSESVLLTPERMMPAGVRVV  110 (111)
T ss_dssp             BTTBCCCCCBCEEECTTSCCEEECCCSSCCCTTCBCC
T ss_pred             ECCeeceEEEEEeEcCCCCcEEEEcCCCCCCCCCEec
Confidence            69999999999998765  367788888899999973

>d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: Domain B2 of PheRS-beta, PheT
species: Thermus thermophilus [TaxId: 274]

Probab=96.78  E-value=6.2e-05  Score=48.51  Aligned_cols=33  Identities=24%  Similarity=0.372  Sum_probs=20.3

Q ss_pred             CCcccccceEEEEe------CCCcEEEEcCCCCCCCCcEE
Q psy15304          1 MRGVTSEAMVMCAS------TPDKVEILAPPSAAKPGDLI   34 (96)
Q Consensus         1 mrGv~S~gMlL~a~------~~~~v~ll~p~~~~~~G~rv   34 (96)
                      |||++||||++++.      +.+.+-.| |.+.+++|+.+
T Consensus        70 irGv~S~GMlcS~~ELGl~~~~~GI~~L-~~d~~~~G~~~  108 (113)
T d1jjcb3          70 IQGVRSFGMALSPRELGVGEYGGGLLEF-PEDALPPGTPL  108 (113)
T ss_dssp             ETTEEEESEECCHHHHTSCSCCSSCCCB-CTTSSCTTCBG
T ss_pred             ecCEeeeeEEecHHHcCCCCCCCcEEEe-CCCCCCCCCch
Confidence            69999999965553      22233323 33336888865