Psyllid ID: psy15325

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGQAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHNN
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
HHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccHHHHHHHHHccccHHccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLdtgnpavftqgQAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENqddrgnhnn
Flexible Loop (DISEMBL)
fllywreynrtqtdyrerckgriqrqleitgrtttNEELEAMLDTGNPAVFTQGQAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVenqddrgnhnn
Low Complexity Region (SEG)
FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGQAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHNN
Disordered region (IsUnstruct)
*LLYWREYNRTQTDYRERCKGRIQRQLEIT*****************PAVFTQGQAKQTLADIEARHADIIKLENSIRELHDMFMDMAML************
Disordered Region (DISOPRED)
FLLYWREYNRTQTDYRE*CKGRIQRQLEITG***T*EE*E*MLDT*********QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD******
Disordered Region (DISEMBL)
FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGQAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ********
Disordered Region (DISPRO)
FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGQAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGN***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGQAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHNN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	102	2.2.26 [Sep-21-2011]
Q24547	291	Syntaxin-1A OS=Drosophila	yes	N/A	0.921	0.323	0.75	3e-37
P32850	288	Syntaxin-1A OS=Bos taurus	yes	N/A	0.921	0.326	0.71	2e-36
Q16623	288	Syntaxin-1A OS=Homo sapie	yes	N/A	0.990	0.350	0.672	2e-36
P32851	288	Syntaxin-1A OS=Rattus nor	yes	N/A	0.921	0.326	0.71	3e-36
Q5R4L2	288	Syntaxin-1A OS=Pongo abel	yes	N/A	0.990	0.350	0.672	3e-36
O35526	288	Syntaxin-1A OS=Mus muscul	yes	N/A	0.990	0.350	0.663	1e-35
O16000	291	Syntaxin-1A homolog OS=Ca	yes	N/A	0.921	0.323	0.7	1e-35
Q16932	290	Syntaxin OS=Aplysia calif	N/A	N/A	0.921	0.324	0.7	2e-35
A8WVD0	293	Syntaxin-1A OS=Caenorhabd	N/A	N/A	0.921	0.320	0.7	2e-35
Q13277	289	Syntaxin-3 OS=Homo sapien	no	N/A	0.921	0.325	0.636	2e-32

>sp|Q24547|STX1A_DROME Syntaxin-1A OS=Drosophila melanogaster GN=Syx1A PE=1 SV=1

 Score =  153 bits (386), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/100 (75%), Positives = 83/100 (83%), Gaps = 6/100 (6%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------ 54
           F+    EYNRTQTDYRERCKGRIQRQLEITGR T ++ELE ML+ GN +VFTQG      
Sbjct: 130 FVEVMTEYNRTQTDYRERCKGRIQRQLEITGRPTNDDELEKMLEEGNSSVFTQGIIMETQ 189

Query: 55  QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
           QAKQTLADIEARH DI+KLE SI+ELHDMFMDMAMLVE+Q
Sbjct: 190 QAKQTLADIEARHQDIMKLETSIKELHDMFMDMAMLVESQ 229

Plays a critical role in several secretory processes, including cuticle secretion and neurotransmitter release, and probably assists in neuronal membrane maturation or the final stages of neuronal differentiation. Essential for embryonic viability and development. Required for coordinated peristaltic contractions.
Drosophila melanogaster (taxid: 7227)

>sp|P32850|STX1A_BOVIN Syntaxin-1A OS=Bos taurus GN=STX1A PE=1 SV=1

 Score =  150 bits (379), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/100 (71%), Positives = 83/100 (83%), Gaps = 6/100 (6%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------ 54
           F+    EYN TQ+DYRERCKGRIQRQLEITGRTTT+EELE ML++GNPA+F  G      
Sbjct: 127 FVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSS 186

Query: 55  QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
            +KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 187 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQ 226

Potentially involved in docking of synaptic vesicles at presynaptic active zones. May play a critical role in neurotransmitter exocytosis. May mediate Ca(2+)-regulation of exocytosis acrosomal reaction in sperm.

Bos taurus (taxid: 9913)

>sp|Q16623|STX1A_HUMAN Syntaxin-1A OS=Homo sapiens GN=STX1A PE=1 SV=1

 Score =  150 bits (379), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/110 (67%), Positives = 87/110 (79%), Gaps = 9/110 (8%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------ 54
           F+    EYN TQ+DYRERCKGRIQRQLEITGRTTT+EELE ML++GNPA+F  G      
Sbjct: 127 FVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSS 186

Query: 55  QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQD---DRGNHN 101
            +KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q    DR  +N
Sbjct: 187 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYN 236

Potentially involved in docking of synaptic vesicles at presynaptic active zones. May play a critical role in neurotransmitter exocytosis. May mediate Ca(2+)-regulation of exocytosis acrosomal reaction in sperm.

Homo sapiens (taxid: 9606)

>sp|P32851|STX1A_RAT Syntaxin-1A OS=Rattus norvegicus GN=Stx1a PE=1 SV=1

 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/100 (71%), Positives = 83/100 (83%), Gaps = 6/100 (6%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------ 54
           F+    EYN TQ+DYRERCKGRIQRQLEITGRTTT+EELE ML++GNPA+F  G      
Sbjct: 127 FVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSS 186

Query: 55  QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
            +KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 187 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQ 226

Potentially involved in docking of synaptic vesicles at presynaptic active zones. May play a critical role in neurotransmitter exocytosis. May mediate Ca(2+)-regulation of exocytosis acrosomal reaction in sperm.

Rattus norvegicus (taxid: 10116)

>sp|Q5R4L2|STX1A_PONAB Syntaxin-1A OS=Pongo abelii GN=STX1A PE=2 SV=1

 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 74/110 (67%), Positives = 87/110 (79%), Gaps = 9/110 (8%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------ 54
           F+    EYN TQ+DYRERCKGRIQRQLEITGRTTT+EELE ML++GNPA+F  G      
Sbjct: 127 FVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSS 186

Query: 55  QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQD---DRGNHN 101
            +KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q    DR  +N
Sbjct: 187 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYN 236

Potentially involved in docking of synaptic vesicles at presynaptic active zones. May play a critical role in neurotransmitter exocytosis. May mediate Ca(2+)-regulation of. exocytosis acrosomal reaction in sperm.

Pongo abelii (taxid: 9601)

>sp|O35526|STX1A_MOUSE Syntaxin-1A OS=Mus musculus GN=Stx1a PE=1 SV=3

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/110 (66%), Positives = 86/110 (78%), Gaps = 9/110 (8%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------ 54
           F+    EYN TQ+DYRERCKGRIQRQLEITGRTTT+EELE ML++GNPA+F  G      
Sbjct: 127 FVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSS 186

Query: 55  QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQD---DRGNHN 101
            +KQ L++IE RH++IIKLE SIRELHDMFMDMAMLVE+Q    DR  +N
Sbjct: 187 ISKQALSEIETRHSEIIKLETSIRELHDMFMDMAMLVESQGEMIDRIEYN 236

Potentially involved in docking of synaptic vesicles at presynaptic active zones. May play a critical role in neurotransmitter exocytosis. May mediate Ca(2+)-regulation of exocytosis acrosomal reaction in sperm.

Mus musculus (taxid: 10090)

>sp|O16000|STX1A_CAEEL Syntaxin-1A homolog OS=Caenorhabditis elegans GN=unc-64 PE=1 SV=1

 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 83/100 (83%), Gaps = 6/100 (6%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------ 54
           F+    +YN+TQTDYRERCKGRIQRQL+I G+   +E+LE M+++GNP VFTQG      
Sbjct: 128 FVEVMTDYNKTQTDYRERCKGRIQRQLDIAGKQVGDEDLEEMIESGNPGVFTQGIITDTQ 187

Query: 55  QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
           QAKQTLADIEARH DI+KLE+SIRELHDMFMDMAMLVE+Q
Sbjct: 188 QAKQTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQ 227

Plays a critical role in several secretory processes, including cuticle secretion and neurotransmitter release, and probably assists in neuronal membrane maturation or the final stages of neuronal differentiation. Essential for embryonic viability and development. Has a role in dauer formation and adult life span. Required for locomotion.

Caenorhabditis elegans (taxid: 6239)

>sp|Q16932|STX_APLCA Syntaxin OS=Aplysia californica PE=2 SV=1

 Score =  147 bits (372), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 82/100 (82%), Gaps = 6/100 (6%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------ 54
           F+    +YN  Q DYRERCKGRI+RQL ITG+TTTNEELE M+++GNPA+FTQG      
Sbjct: 129 FVEVMNDYNACQIDYRERCKGRIKRQLAITGKTTTNEELEDMIESGNPAIFTQGIIMETQ 188

Query: 55  QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
           QA +TLADIEARH DI+KLE SIR+LHDMFMDMAMLVE+Q
Sbjct: 189 QANETLADIEARHNDIMKLETSIRDLHDMFMDMAMLVESQ 228

Potentially involved in docking of synaptic vesicles at presynaptic active zones.

Aplysia californica (taxid: 6500)

>sp|A8WVD0|STX1A_CAEBR Syntaxin-1A OS=Caenorhabditis briggsae GN=unc-64 PE=3 SV=1

 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 83/100 (83%), Gaps = 6/100 (6%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------ 54
           F+    +YN+TQTDYRERCKGRIQRQL+I G+   +E+LE M+++GNP VFTQG      
Sbjct: 130 FVEVMTDYNKTQTDYRERCKGRIQRQLDIAGKQVGDEDLEEMIESGNPGVFTQGIITDTQ 189

Query: 55  QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
           QAKQTLADIEARH DI+KLE+SIRELHDMFMDMAMLVE+Q
Sbjct: 190 QAKQTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQ 229

Plays a critical role in several secretory processes, including cuticle secretion and neurotransmitter release, and probably assists in neuronal membrane maturation or the final stages of neuronal differentiation. Essential for embryonic viability and development. Has a role in dauer formation and adult life span. Required for locomotion.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q13277|STX3_HUMAN Syntaxin-3 OS=Homo sapiens GN=STX3 PE=1 SV=3

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 79/99 (79%), Gaps = 5/99 (5%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG-----Q 55
           F+    +YN  Q D+RER KGRIQRQLEITG+ TT+EELE ML++GNPA+FT G      
Sbjct: 127 FVEVMTKYNEAQVDFRERSKGRIQRQLEITGKKTTDEELEEMLESGNPAIFTSGIIDSQI 186

Query: 56  AKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
           +KQ L++IE RH DI++LE+SI+ELHDMFMD+AMLVENQ
Sbjct: 187 SKQALSEIEGRHKDIVRLESSIKELHDMFMDIAMLVENQ 225

Potentially involved in docking of synaptic vesicles at presynaptic active zones.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
383847265	294	PREDICTED: syntaxin-1A-like [Megachile r	0.921	0.319	0.86	5e-42
340720485	293	PREDICTED: syntaxin-1A-like isoform 1 [B	0.921	0.320	0.85	2e-41
332023695	191	Syntaxin [Acromyrmex echinatior]	0.921	0.492	0.85	2e-41
345487373	297	PREDICTED: syntaxin-1A-like [Nasonia vit	0.921	0.316	0.85	2e-41
321456935	294	syntaxin [Daphnia pulex]	0.921	0.319	0.84	3e-41
241896912	301	syntaxin 1A isoform 2 [Acyrthosiphon pis	0.921	0.312	0.84	6e-41
239793593	264	ACYPI005967 [Acyrthosiphon pisum]	0.921	0.356	0.84	6e-41
241896910	301	syntaxin 1A isoform 1 [Acyrthosiphon pis	0.921	0.312	0.84	6e-41
328791302	465	PREDICTED: syntaxin-1A [Apis mellifera]	0.921	0.202	0.85	8e-41
380018639	439	PREDICTED: syntaxin-1A-like [Apis florea	0.921	0.214	0.85	8e-41

>gi|383847265|ref|XP_003699275.1| PREDICTED: syntaxin-1A-like [Megachile rotundata]

 Score =  174 bits (441), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 86/100 (86%), Positives = 88/100 (88%), Gaps = 6/100 (6%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------ 54
           F+    EYNRTQTDYRERCKGRIQRQLEITGRTTTNEELE ML+ GNPAVFTQG      
Sbjct: 131 FVEVMTEYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEEMLEQGNPAVFTQGIIMETQ 190

Query: 55  QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
           QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ
Sbjct: 191 QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 230

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720485|ref|XP_003398667.1| PREDICTED: syntaxin-1A-like isoform 1 [Bombus terrestris]

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/100 (85%), Positives = 88/100 (88%), Gaps = 6/100 (6%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------ 54
           F+    EYNRTQTDYRERCKGRIQRQLEITGRTTTNEELE ML+ GNPAVFTQG      
Sbjct: 131 FVEVMTEYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEEMLEQGNPAVFTQGIIMETQ 190

Query: 55  QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
           QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 191 QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVESQ 230

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023695|gb|EGI63919.1| Syntaxin [Acromyrmex echinatior]

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/100 (85%), Positives = 88/100 (88%), Gaps = 6/100 (6%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------ 54
           F+    EYNRTQTDYRERCKGRIQRQLEITGRTTTNEELE ML+ GNPAVFTQG      
Sbjct: 49  FVEVMTEYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEEMLEQGNPAVFTQGIIMETQ 108

Query: 55  QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
           QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 109 QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVESQ 148

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487373|ref|XP_001604855.2| PREDICTED: syntaxin-1A-like [Nasonia vitripennis]

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/100 (85%), Positives = 88/100 (88%), Gaps = 6/100 (6%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------ 54
           F+    EYNRTQTDYRERCKGRIQRQLEITGRTTTNEELE ML+ GNPAVFTQG      
Sbjct: 131 FVEVMTEYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEEMLEQGNPAVFTQGIIMETQ 190

Query: 55  QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
           QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 191 QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVESQ 230

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321456935|gb|EFX68032.1| syntaxin [Daphnia pulex]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 84/100 (84%), Positives = 88/100 (88%), Gaps = 6/100 (6%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------ 54
           F+    EYNRTQTDYRERCKGRIQRQLEITGRTTTNEELE ML+ GNPAVFTQG      
Sbjct: 132 FVEVMTEYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEEMLEQGNPAVFTQGIIMETQ 191

Query: 55  QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
           QA+QTLADIEARHADI+KLENSIRELHDMFMDMAMLVENQ
Sbjct: 192 QARQTLADIEARHADIMKLENSIRELHDMFMDMAMLVENQ 231

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241896912|ref|NP_001155923.1| syntaxin 1A isoform 2 [Acyrthosiphon pisum]

 Score =  171 bits (433), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 84/100 (84%), Positives = 88/100 (88%), Gaps = 6/100 (6%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------ 54
           F+    EYNRTQTDYRERCKGRIQRQLEITGRTTTN+ELE ML+ GNPAVFTQG      
Sbjct: 137 FVEVMTEYNRTQTDYRERCKGRIQRQLEITGRTTTNDELEEMLEQGNPAVFTQGIIMETQ 196

Query: 55  QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
           QA+QTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ
Sbjct: 197 QARQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 236

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239793593|dbj|BAH72906.1| ACYPI005967 [Acyrthosiphon pisum]

 Score =  171 bits (432), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 84/100 (84%), Positives = 88/100 (88%), Gaps = 6/100 (6%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------ 54
           F+    EYNRTQTDYRERCKGRIQRQLEITGRTTTN+ELE ML+ GNPAVFTQG      
Sbjct: 137 FVEVMTEYNRTQTDYRERCKGRIQRQLEITGRTTTNDELEEMLEQGNPAVFTQGIIMETQ 196

Query: 55  QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
           QA+QTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ
Sbjct: 197 QARQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 236

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241896910|ref|NP_001155922.1| syntaxin 1A isoform 1 [Acyrthosiphon pisum]

 Score =  171 bits (432), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 84/100 (84%), Positives = 88/100 (88%), Gaps = 6/100 (6%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------ 54
           F+    EYNRTQTDYRERCKGRIQRQLEITGRTTTN+ELE ML+ GNPAVFTQG      
Sbjct: 137 FVEVMTEYNRTQTDYRERCKGRIQRQLEITGRTTTNDELEEMLEQGNPAVFTQGIIMETQ 196

Query: 55  QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
           QA+QTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ
Sbjct: 197 QARQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 236

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791302|ref|XP_393760.4| PREDICTED: syntaxin-1A [Apis mellifera]

 Score =  170 bits (431), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 85/100 (85%), Positives = 88/100 (88%), Gaps = 6/100 (6%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------ 54
           F+    EYNRTQTDYRERCKGRIQRQLEITGRTTTNEELE ML+ GNPAVFTQG      
Sbjct: 131 FVEVMTEYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEEMLEQGNPAVFTQGIIMETQ 190

Query: 55  QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
           QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 191 QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVESQ 230

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018639|ref|XP_003693234.1| PREDICTED: syntaxin-1A-like [Apis florea]

 Score =  170 bits (431), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 85/100 (85%), Positives = 88/100 (88%), Gaps = 6/100 (6%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------ 54
           F+    EYNRTQTDYRERCKGRIQRQLEITGRTTTNEELE ML+ GNPAVFTQG      
Sbjct: 131 FVEVMTEYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEEMLEQGNPAVFTQGIIMETQ 190

Query: 55  QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
           QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 191 QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVESQ 230

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
FB|FBgn0013343	291	Syx1A "Syntaxin 1A" [Drosophil	0.941	0.329	0.735	1.2e-33
UNIPROTKB|F1N861	288	LOC100857565 "Uncharacterized	0.941	0.333	0.705	1.8e-32
UNIPROTKB|A8MZ54	280	STX1A "Syntaxin-1A" [Homo sapi	0.960	0.35	0.692	1.8e-32
UNIPROTKB|A4FV26	322	STX1A "Syntaxin-1A" [Bos tauru	0.941	0.298	0.696	2.3e-32
UNIPROTKB|P32850	288	STX1A "Syntaxin-1A" [Bos tauru	0.941	0.333	0.696	2.3e-32
UNIPROTKB|F1PVP1	288	STX1A "Uncharacterized protein	0.941	0.333	0.696	2.3e-32
UNIPROTKB|Q16623	288	STX1A "Syntaxin-1A" [Homo sapi	0.941	0.333	0.696	2.3e-32
UNIPROTKB|F1RJM9	288	STX1A "Uncharacterized protein	0.941	0.333	0.696	2.3e-32
UNIPROTKB|Q5R4L2	288	STX1A "Syntaxin-1A" [Pongo abe	0.941	0.333	0.696	2.3e-32
RGD|69430	288	Stx1a "syntaxin 1A (brain)" [R	0.941	0.333	0.696	2.3e-32

FB|FBgn0013343 Syx1A "Syntaxin 1A" [Drosophila melanogaster (taxid:7227)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 75/102 (73%), Positives = 84/102 (82%)

Query:     1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------ 54
             F+    EYNRTQTDYRERCKGRIQRQLEITGR T ++ELE ML+ GN +VFTQG      
Sbjct:   130 FVEVMTEYNRTQTDYRERCKGRIQRQLEITGRPTNDDELEKMLEEGNSSVFTQGIIMETQ 189

Query:    55 QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
             QAKQTLADIEARH DI+KLE SI+ELHDMFMDMAMLVE+Q +
Sbjct:   190 QAKQTLADIEARHQDIMKLETSIKELHDMFMDMAMLVESQGE 231

GO:0006887 "exocytosis" evidence=NAS

GO:0007268 "synaptic transmission" evidence=NAS

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0007269 "neurotransmitter secretion" evidence=NAS;IMP

GO:0005484 "SNAP receptor activity" evidence=ISS;NAS

GO:0005886 "plasma membrane" evidence=ISS;IDA;NAS

GO:0006936 "muscle contraction" evidence=NAS

GO:0016020 "membrane" evidence=NAS

GO:0042335 "cuticle development" evidence=NAS

GO:0007317 "regulation of pole plasm oskar mRNA localization" evidence=IMP

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0016081 "synaptic vesicle docking involved in exocytosis" evidence=ISS

GO:0007349 "cellularization" evidence=NAS;TAS

GO:0016021 "integral to membrane" evidence=ISS

GO:0000910 "cytokinesis" evidence=IMP

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0007482 "haltere development" evidence=IGI

GO:0031629 "synaptic vesicle fusion to presynaptic membrane" evidence=IMP

UNIPROTKB|F1N861 LOC100857565 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 72/102 (70%), Positives = 83/102 (81%)

Query:     1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGQ----- 55
             F+    EYN TQTDYRERCKGRIQRQLEITGRTTT+EELE ML++GNPA+F+ G      
Sbjct:   127 FVEVMSEYNATQTDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFSSGIIMDSN 186

Query:    56 -AKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
               KQ L +IE RH++IIKLENSIRELHDMFMDMAMLVE+Q +
Sbjct:   187 ITKQALNEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGE 228

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0000149 "SNARE binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0019855 "calcium channel inhibitor activity" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0070044 "synaptobrevin 2-SNAP-25-syntaxin-1a complex" evidence=IEA

UNIPROTKB|A8MZ54 STX1A "Syntaxin-1A" [Homo sapiens (taxid:9606)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 72/104 (69%), Positives = 84/104 (80%)

Query:     1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGQ----- 55
             F+    EYN TQ+DYRERCKGRIQRQLEITGRTTT+EELE ML++GNPA+F  G      
Sbjct:   127 FVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSS 186

Query:    56 -AKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRG 98
              +KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q   G
Sbjct:   187 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQVSAG 230

GO:0007268 "synaptic transmission" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|A4FV26 STX1A "Syntaxin-1A" [Bos taurus (taxid:9913)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 71/102 (69%), Positives = 84/102 (82%)

Query:     1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGQ----- 55
             F+    EYN TQ+DYRERCKGRIQRQLEITGRTTT+EELE ML++GNPA+F  G      
Sbjct:   161 FVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSS 220

Query:    56 -AKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
              +KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q +
Sbjct:   221 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGE 262

GO:0070044 "synaptobrevin 2-SNAP-25-syntaxin-1a complex" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0019855 "calcium channel inhibitor activity" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0000149 "SNARE binding" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

UNIPROTKB|P32850 STX1A "Syntaxin-1A" [Bos taurus (taxid:9913)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 71/102 (69%), Positives = 84/102 (82%)

Query:     1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGQ----- 55
             F+    EYN TQ+DYRERCKGRIQRQLEITGRTTT+EELE ML++GNPA+F  G      
Sbjct:   127 FVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSS 186

Query:    56 -AKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
              +KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q +
Sbjct:   187 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGE 228

GO:0031201 "SNARE complex" evidence=ISS

GO:0043005 "neuron projection" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

UNIPROTKB|F1PVP1 STX1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 71/102 (69%), Positives = 84/102 (82%)

Query:     1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGQ----- 55
             F+    EYN TQ+DYRERCKGRIQRQLEITGRTTT+EELE ML++GNPA+F  G      
Sbjct:   127 FVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSS 186

Query:    56 -AKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
              +KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q +
Sbjct:   187 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGE 228

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

UNIPROTKB|Q16623 STX1A "Syntaxin-1A" [Homo sapiens (taxid:9606)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 71/102 (69%), Positives = 84/102 (82%)

Query:     1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGQ----- 55
             F+    EYN TQ+DYRERCKGRIQRQLEITGRTTT+EELE ML++GNPA+F  G      
Sbjct:   127 FVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSS 186

Query:    56 -AKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
              +KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q +
Sbjct:   187 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGE 228

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0000149 "SNARE binding" evidence=IEA

GO:0001948 "glycoprotein binding" evidence=IEA

GO:0001956 "positive regulation of neurotransmitter secretion" evidence=IEA

GO:0009629 "response to gravity" evidence=IEA

GO:0016081 "synaptic vesicle docking involved in exocytosis" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0019855 "calcium channel inhibitor activity" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030141 "secretory granule" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0032028 "myosin head/neck binding" evidence=IEA

GO:0042641 "actomyosin" evidence=IEA

GO:0043008 "ATP-dependent protein binding" evidence=IEA

GO:0045921 "positive regulation of exocytosis" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0048306 "calcium-dependent protein binding" evidence=IEA

GO:0070032 "synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex" evidence=IEA

GO:0070044 "synaptobrevin 2-SNAP-25-syntaxin-1a complex" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0050796 "regulation of insulin secretion" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0031201 "SNARE complex" evidence=IDA

GO:0043005 "neuron projection" evidence=IDA

GO:0005886 "plasma membrane" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=TAS

GO:0014047 "glutamate secretion" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F1RJM9 STX1A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 71/102 (69%), Positives = 84/102 (82%)

Query:     1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGQ----- 55
             F+    EYN TQ+DYRERCKGRIQRQLEITGRTTT+EELE ML++GNPA+F  G      
Sbjct:   127 FVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSS 186

Query:    56 -AKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
              +KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q +
Sbjct:   187 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGE 228

GO:0070044 "synaptobrevin 2-SNAP-25-syntaxin-1a complex" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0019855 "calcium channel inhibitor activity" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0000149 "SNARE binding" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

UNIPROTKB|Q5R4L2 STX1A "Syntaxin-1A" [Pongo abelii (taxid:9601)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 71/102 (69%), Positives = 84/102 (82%)

Query:     1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGQ----- 55
             F+    EYN TQ+DYRERCKGRIQRQLEITGRTTT+EELE ML++GNPA+F  G      
Sbjct:   127 FVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSS 186

Query:    56 -AKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
              +KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q +
Sbjct:   187 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGE 228

GO:0031201 "SNARE complex" evidence=ISS

RGD|69430 Stx1a "syntaxin 1A (brain)" [Rattus norvegicus (taxid:10116)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 71/102 (69%), Positives = 84/102 (82%)

Query:     1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGQ----- 55
             F+    EYN TQ+DYRERCKGRIQRQLEITGRTTT+EELE ML++GNPA+F  G      
Sbjct:   127 FVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSS 186

Query:    56 -AKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
              +KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q +
Sbjct:   187 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGE 228

GO:0000149 "SNARE binding" evidence=ISO;IDA;IPI

GO:0001948 "glycoprotein binding" evidence=IDA

GO:0001956 "positive regulation of neurotransmitter secretion" evidence=IMP

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0006836 "neurotransmitter transport" evidence=TAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0009629 "response to gravity" evidence=IDA

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=NAS

GO:0016081 "synaptic vesicle docking involved in exocytosis" evidence=IEP

GO:0017022 "myosin binding" evidence=IPI

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA;ISO

GO:0017157 "regulation of exocytosis" evidence=IMP

GO:0019855 "calcium channel inhibitor activity" evidence=IEA;ISO

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0030054 "cell junction" evidence=IEA

GO:0030141 "secretory granule" evidence=IDA

GO:0030672 "synaptic vesicle membrane" evidence=IEA;ISO

GO:0030674 "protein binding, bridging" evidence=IPI

GO:0031201 "SNARE complex" evidence=ISO;ISS

GO:0032028 "myosin head/neck binding" evidence=IPI

GO:0042641 "actomyosin" evidence=IDA

GO:0043005 "neuron projection" evidence=IEA;ISO

GO:0043008 "ATP-dependent protein binding" evidence=IPI

GO:0043229 "intracellular organelle" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0045921 "positive regulation of exocytosis" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IDA

GO:0047485 "protein N-terminus binding" evidence=IDA

GO:0048306 "calcium-dependent protein binding" evidence=IPI

GO:0070032 "synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex" evidence=IDA

GO:0070033 "synaptobrevin 2-SNAP-25-syntaxin-1a-complexin II complex" evidence=IDA

GO:0070044 "synaptobrevin 2-SNAP-25-syntaxin-1a complex" evidence=ISO;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R4L2	STX1A_PONAB	No assigned EC number	0.6727	0.9901	0.3506	yes	N/A
P32850	STX1A_BOVIN	No assigned EC number	0.71	0.9215	0.3263	yes	N/A
Q24547	STX1A_DROME	No assigned EC number	0.75	0.9215	0.3230	yes	N/A
O16000	STX1A_CAEEL	No assigned EC number	0.7	0.9215	0.3230	yes	N/A
P32851	STX1A_RAT	No assigned EC number	0.71	0.9215	0.3263	yes	N/A
Q16623	STX1A_HUMAN	No assigned EC number	0.6727	0.9901	0.3506	yes	N/A
O35526	STX1A_MOUSE	No assigned EC number	0.6636	0.9901	0.3506	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	102
cd00179	151	cd00179, SynN, Syntaxin N-terminus domain; syntaxi	4e-16
COG5074	280	COG5074, COG5074, t-SNARE complex subunit, syntaxi	1e-11
smart00397	66	smart00397, t_SNARE, Helical region found in SNARE	1e-05
pfam05739	62	pfam05739, SNARE, SNARE domain	3e-05
cd00193	60	cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se	3e-04

>gnl|CDD|238105 cd00179, SynN, Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain

 Score = 68.5 bits (168), Expect = 4e-16
 Identities = 29/48 (60%), Positives = 35/48 (72%)

Query: 7   EYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG 54
           E+N+ Q  YRER K RIQRQLEITG   T+EELE ML++GN  +FT  
Sbjct: 103 EFNKAQRKYRERYKERIQRQLEITGGEATDEELEDMLESGNSEIFTSQ 150

Length = 151

>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

 Score = 58.7 bits (142), Expect = 1e-11
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 9/103 (8%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAML-DTGNPAVFTQ------ 53
           FL   ++Y    ++YRE  K + +RQ  I     T +E+EA + D     VF+Q      
Sbjct: 109 FLKLIQDYRIIDSNYREEEKEQARRQYIIAQPEATEDEVEAAINDVNGQQVFSQALLNAN 168

Query: 54  --GQAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
             G+AK  LA+++ARH +I K+E ++ EL  +F DM  LV  Q
Sbjct: 169 RRGEAKTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQ 211

Length = 280

>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs

 Score = 39.5 bits (93), Expect = 1e-05
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 57 KQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDR 97
          +Q LA  E R  ++ +LE SI+EL  +F+DM   +E Q ++
Sbjct: 1  QQALAREEERDEELEQLEKSIQELKQIFLDMGTELEEQGEQ 41

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs". Length = 66

>gnl|CDD|203323 pfam05739, SNARE, SNARE domain

 Score = 38.3 bits (90), Expect = 3e-05
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 66 RHADIIKLENSIRELHDMFMDMAMLVENQ 94
          R   + +LE+SI EL  +F+DM   VE Q
Sbjct: 1  RDEALEELESSIGELKQLFLDMGEEVEEQ 29

Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. Length = 62

>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

 Score = 35.5 bits (83), Expect = 3e-04
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 63 IEARHADIIKLENSIRELHDMFMDMAMLVENQDDR 97
           + R  ++ +LE SI EL  +F+D+   VE Q + 
Sbjct: 1  EQERDEELEQLEASIGELKQIFLDLGTEVEEQGEL 35

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
KOG0810|consensus	297		99.98
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	99.93
KOG0809|consensus	305		99.46
cd00179	151	SynN Syntaxin N-terminus domain; syntaxins are ner	99.42
KOG0811|consensus	269		99.39
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	99.05
cd00193	60	t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu	99.05
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	98.94
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	98.9
KOG0812|consensus	311		98.42
PF09164	68	VitD-bind_III: Vitamin D binding protein, domain I	89.99

>KOG0810|consensus

Probab=99.98  E-value=7.7e-32  Score=202.03  Aligned_cols=101  Identities=55%  Similarity=0.792  Sum_probs=97.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHhCCCcchhhhh------HHHHHHHHHHHHHHHHHHH
Q psy15325          1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGR-TTTNEELEAMLDTGNPAVFTQG------QAKQTLADIEARHADIIKL   73 (102)
Q Consensus         1 F~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~-~~tdeei~~~i~~~~~~~f~~~------~~~~~l~~i~~R~~eI~~l   73 (102)
                      |.++|..|+..|..|+++||.+++|||.+++| .++|++|+.++++|++++|+++      +++++|+++++||.+|++|
T Consensus       132 f~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~~~~~~~~~l~Eiq~Rh~~ik~L  211 (297)
T KOG0810|consen  132 LKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQDRGQAKQTLAEIQERHDEIKKL  211 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999 8999999999999999999877      7899999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325         74 ENSIRELHDMFMDMAMLVENQDDRGNHN  101 (102)
Q Consensus        74 E~si~eL~qlF~Dla~LV~~QGe~id~~  101 (102)
                      |+||.||||||+|||+||+.||||||+|
T Consensus       212 Eksi~ELhqlFlDMa~LVe~QgEmvd~I  239 (297)
T KOG0810|consen  212 EKSIRELHQLFLDMAVLVESQGEMVDRI  239 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            9999999999999999999999999997

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=99.93  E-value=4.3e-25  Score=160.02  Aligned_cols=102  Identities=34%  Similarity=0.552  Sum_probs=96.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhC-CCcchhhhh--------HHHHHHHHHHHHHHHHH
Q psy15325          1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDT-GNPAVFTQG--------QAKQTLADIEARHADII   71 (102)
Q Consensus         1 F~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~-~~~~~f~~~--------~~~~~l~~i~~R~~eI~   71 (102)
                      |.+++++|+.++..|++..+.+++|||-|+.|++|++|++..|.+ ++.++|.+.        .++.+|.++++||.+|+
T Consensus       109 f~~~I~~yr~i~~~yree~~e~~rrQy~Ia~P~ATEdeve~aInd~nG~qvfsqalL~anr~geAktaL~Evq~Rh~~ik  188 (280)
T COG5074         109 FLKLIQDYRIIDSNYREEEKEQARRQYIIAQPEATEDEVEAAINDVNGQQVFSQALLNANRRGEAKTALAEVQARHQEIK  188 (280)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhcCCccchHHHHHHhcccchHHHHHHHHHhcCccchHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999966 567899876        68999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q psy15325         72 KLENSIRELHDMFMDMAMLVENQDDRGNHNN  102 (102)
Q Consensus        72 ~lE~si~eL~qlF~Dla~LV~~QGe~id~~~  102 (102)
                      +||++|.||.+||+||+.||.+|.+++|-||
T Consensus       189 kiEkt~ael~qLfndm~~~V~eq~e~Vd~I~  219 (280)
T COG5074         189 KIEKTMAELTQLFNDMEELVIEQQENVDVID  219 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence            9999999999999999999999999999875

>KOG0809|consensus

Probab=99.46  E-value=3.6e-13  Score=100.59  Aligned_cols=96  Identities=22%  Similarity=0.297  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCHHHHHHHHhCCCcchhhhh---HHHHHHHHHHHHHHHHHHHHH
Q psy15325          2 LLYWREYNRTQTDYRERCKGRIQRQLEI---TGRTTTNEELEAMLDTGNPAVFTQG---QAKQTLADIEARHADIIKLEN   75 (102)
Q Consensus         2 ~~~~~~f~~~Q~~y~~~~k~~~~rq~~i---~~~~~tdeei~~~i~~~~~~~f~~~---~~~~~l~~i~~R~~eI~~lE~   75 (102)
                      .++..+|+..|..|.++++.+-++....   +.|..+..+.+.+..    ..|++.   ..+.+-..+.+|.++|.+|-+
T Consensus       150 Q~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~----~~~qe~ql~~~e~~~~~~~erE~EV~ql~~  225 (305)
T KOG0809|consen  150 QTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSD----RTFQEQQLMLFENNEEVVREREKEVTQLVE  225 (305)
T ss_pred             HHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhh----hhHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            4678899999999999999997765322   223222222222211    234332   335566789999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325         76 SIRELHDMFMDMAMLVENQDDRGNHN  101 (102)
Q Consensus        76 si~eL~qlF~Dla~LV~~QGe~id~~  101 (102)
                      ||.||++||+||++||.+||.+||+|
T Consensus       226 sI~dL~~if~DL~~lVvdQGtvvDRI  251 (305)
T KOG0809|consen  226 SIYDLNQIFKDLSALVVDQGTVVDRI  251 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhhe
Confidence            99999999999999999999999997

>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain

Probab=99.42  E-value=3.8e-13  Score=91.10  Aligned_cols=53  Identities=57%  Similarity=0.877  Sum_probs=50.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhCCCcchhhh
Q psy15325          1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQ   53 (102)
Q Consensus         1 F~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~~~~~~f~~   53 (102)
                      |.++|.+|+.+|..|+++||.+++|+++|++|++||+|+++++++|++++|++
T Consensus        97 f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i~~~~~tdeei~~~~~~~~~~~~~~  149 (151)
T cd00179          97 FVEVMTEFNKAQRKYRERYKERIQRQLEITGGEATDEELEDMLESGNSEIFTS  149 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHcCChhhhcC
Confidence            78999999999999999999999999999999999999999999998888875

>KOG0811|consensus

Probab=99.39  E-value=2e-12  Score=96.16  Aligned_cols=46  Identities=28%  Similarity=0.388  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325         56 AKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN  101 (102)
Q Consensus        56 ~~~~l~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~  101 (102)
                      ....+..+++|...|.+||..|.|||+||+|||.||++||++||+|
T Consensus       168 ~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsI  213 (269)
T KOG0811|consen  168 LEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSI  213 (269)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHH
Confidence            4457889999999999999999999999999999999999999987

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=99.05  E-value=3.1e-09  Score=79.06  Aligned_cols=42  Identities=29%  Similarity=0.385  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325         60 LADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN  101 (102)
Q Consensus        60 l~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~  101 (102)
                      ...+.+|..+|.+|.++|.||+++|.||+.+|.+||+.||||
T Consensus       187 q~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrI  228 (283)
T COG5325         187 QILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRI  228 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence            344889999999999999999999999999999999999997

>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

Probab=99.05  E-value=2.1e-10  Score=66.16  Aligned_cols=39  Identities=31%  Similarity=0.491  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q psy15325         64 EARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHNN  102 (102)
Q Consensus        64 ~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~~  102 (102)
                      ++|++++..|+++|.+|++||.||+.+|.+||++||+|.
T Consensus         2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~   40 (60)
T cd00193           2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIE   40 (60)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999873

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=98.94  E-value=1.5e-09  Score=63.78  Aligned_cols=37  Identities=35%  Similarity=0.503  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325         65 ARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN  101 (102)
Q Consensus        65 ~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~  101 (102)
                      +|+.+|..|+++|.+|++||.||+.+|.+||++||+|
T Consensus         1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i   37 (63)
T PF05739_consen    1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRI   37 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHH
Confidence            5899999999999999999999999999999999986

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>smart00397 t_SNARE Helical region found in SNAREs

Probab=98.90  E-value=3.8e-09  Score=61.71  Aligned_cols=43  Identities=30%  Similarity=0.417  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325         59 TLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN  101 (102)
Q Consensus        59 ~l~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~  101 (102)
                      ....+.+|+.+|..|+++|.+|+.||.||+.+|++||++||++
T Consensus         3 ~~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i   45 (66)
T smart00397        3 ADQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRI   45 (66)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999999999999999986

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>KOG0812|consensus

Probab=98.42  E-value=4.4e-07  Score=68.07  Aligned_cols=43  Identities=21%  Similarity=0.356  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325         59 TLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN  101 (102)
Q Consensus        59 ~l~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~  101 (102)
                      ....+++|.+.+..||.+|.||-+||..||+||.+|||+|.||
T Consensus       218 s~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RI  260 (311)
T KOG0812|consen  218 SDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRI  260 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3688999999999999999999999999999999999999876

>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure

Probab=89.99  E-value=0.82  Score=27.45  Aligned_cols=29  Identities=24%  Similarity=0.481  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhC
Q psy15325         13 TDYRERCKGRIQRQLEITGRTTTNEELEAMLDT   45 (102)
Q Consensus        13 ~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~   45 (102)
                      .+||+++.+++...    -|++|+.++.++++.
T Consensus        12 tEyKKrL~e~l~~k----~P~at~~~l~~lve~   40 (68)
T PF09164_consen   12 TEYKKRLAERLRAK----LPDATPTELKELVEK   40 (68)
T ss_dssp             HHHHHHHHHHHHHH-----TTS-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----CCCCCHHHHHHHHHH
Confidence            46777777776555    489999999999864

It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	102
3c98_B	279	Revised Structure Of The Munc18a-Syntaxin1 Complex		1e-37
1l4a_B	88	X-Ray Structure Of The Neuronal ComplexinSNARE COMP		6e-16
1s94_A	180	Crystal Structure Of The Habc Domain Of Neuronal Sy		2e-13
1urq_B	75	Crystal Structure Of Neuronal Q-Snares In Complex W		4e-13
3hd7_B	109	Helical Extension Of The Neuronal Snare Complex Int		5e-13
1sfc_B	83	Neuronal Synaptic Fusion Complex Length = 83		5e-13
1hvv_A	75	Self-Association Of The H3 Region Of Syntaxin 1a: I		2e-12
1jth_B	77	Crystal Structure And Biophysical Properties Of A C		1e-11
1n7s_B	68	High Resolution Structure Of A Truncated Neuronal S		1e-11
3rk2_B	65	Truncated Snare Complex Length = 65		2e-11
1kil_B	62	Three-Dimensional Structure Of The ComplexinSNARE C		2e-11
1fio_A	196	Crystal Structure Of Yeast T-Snare Protein Sso1 Len		9e-11
2xhe_B	279	Crystal Structure Of The Unc18-Syntaxin 1 Complex F		4e-08
1ez3_A	127	Crystal Structure Of The Neuronal T-Snare Syntaxin-		9e-05

>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 279

Iteration: 1
 Score =  150 bits (380), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/100 (71%), Positives = 83/100 (83%), Gaps = 6/100 (6%)
Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------ 54
           F+    EYN TQ+DYRERCKGRIQRQLEITGRTTT+EELE ML++GNPA+F  G      
Sbjct: 139 FVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSS 198
Query: 55  QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
            +KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 199 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQ 238

>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX From The Squid Loligo Pealei Length = 88

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 46/60 (76%), Gaps = 3/60 (5%)
Query: 45  TGNPAVFTQGQAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQD---DRGNHN 101
           + +  +    QAKQTLADIEARHADI+KLE SIRELHDMFMDMAMLVE+Q    DR  +N
Sbjct: 3   SASGIIMETQQAKQTLADIEARHADIMKLETSIRELHDMFMDMAMLVESQGEMIDRIEYN 62

>pdb|1S94|A Chain A, Crystal Structure Of The Habc Domain Of Neuronal Syntaxin From The Squid Loligo Pealei Length = 180

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 38/46 (82%)
Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTG 46
           F+    +YN TQ DYR+RCK RI+RQ+EITGRTTTNEELE ML++G
Sbjct: 135 FVEVMSDYNTTQIDYRDRCKARIKRQMEITGRTTTNEELEDMLESG 180

>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With R-Snare Motif Of Tomosyn Length = 75

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 31/41 (75%), Positives = 37/41 (90%)
Query: 54 GQAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
            +KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 2  SHSKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQ 42

>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The Membrane, Spacegroup C 1 2 1 Length = 109

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 41/49 (83%), Gaps = 3/49 (6%)
Query: 56  AKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQD---DRGNHN 101
           +KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q    DR  +N
Sbjct: 9   SKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYN 57

>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex Length = 83

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 31/39 (79%), Positives = 37/39 (94%)
Query: 56 AKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
          +KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 9  SKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQ 47

>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a: Implications For Snare Complex Assembly Length = 75

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/37 (81%), Positives = 35/37 (94%)
Query: 58 QTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
          Q L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 1  QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQ 37

>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex Between The N-Terminal Region Of Snap25 And The Snare Region Of Syntaxin 1a Length = 77

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 34/36 (94%)
Query: 59 TLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
           L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 1  ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQ 36

>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare Complex Length = 68

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/37 (78%), Positives = 34/37 (91%)
Query: 58 QTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
            L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 2  SALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQ 38

>pdb|3RK2|B Chain B, Truncated Snare Complex Length = 65

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/37 (78%), Positives = 34/37 (91%)
Query: 58 QTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
            L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 2  SALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQ 38

>pdb|1KIL|B Chain B, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX Length = 62

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/37 (78%), Positives = 34/37 (91%)
Query: 58 QTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
            L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 2  SALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQ 38

>pdb|1FIO|A Chain A, Crystal Structure Of Yeast T-Snare Protein Sso1 Length = 196

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 9/100 (9%)
Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAML-DTGNPAVFTQ------ 53
           FL   ++Y    ++Y+E  K + +RQ  I     T +E+EA + D G   +F+Q      
Sbjct: 93  FLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNAN 152
Query: 54  --GQAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLV 91
             G+AK  LA+++ARH +++KLE S+ EL  +F DM  LV
Sbjct: 153 RRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELV 192

>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 279

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFT----QGQA 56
           F+     YN  Q + + R    + RQ  +   + +++ ++ +++ G   +F+    +G A
Sbjct: 147 FVKVMTRYNDVQAENKRRYGENVARQCRVVEPSLSDDAIQKVIEHGTEGIFSGMRLEG-A 205
Query: 57  KQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
           +  L +I  RH DI +LE S+ ELH+MF DM+ LV +Q
Sbjct: 206 EAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQ 243

>pdb|1EZ3|A Chain A, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a Length = 127

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 1   FLLYWREYNRTQTDYRERCKGRIQ 24
           F+    EYN TQ+DYRERCKGRIQ
Sbjct: 104 FVEVMSEYNATQSDYRERCKGRIQ 127

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	102
1fio_A	196	SSO1 protein; four helix bundle, alpha helix, memb	5e-22
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	2e-19
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	1e-18
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	3e-13
1n7s_B	68	Syntaxin 1A; neuronal snare protein complex, four	5e-12
3b5n_B	69	Protein SSO1; snare complex, syntaxin, synaptobrev	5e-12
1sfc_B	83	Protein (syntaxin 1A), protein (synaptobrevin 2);	1e-11
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	3e-11
1s94_A	180	S-syntaxin; three helix bundle, structural plastic	5e-10
1gl2_B	65	Syntaxin 7; membrane protein, membrane fusion prot	8e-10
2nps_B	71	Syntaxin 13, vesicle-associated membrane protein 4	4e-09

>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196

 Score = 84.3 bits (208), Expect = 5e-22
 Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 9/99 (9%)

Query: 5   WREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAML-DTGNPAVFTQ--------GQ 55
            ++Y    ++Y+E  K + +RQ  I     T +E+EA + D G   +F+Q        G+
Sbjct: 97  IQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGE 156

Query: 56  AKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
           AK  LA+++ARH +++KLE S+ EL  +F DM  LV  Q
Sbjct: 157 AKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQ 195

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267

 Score = 79.0 bits (194), Expect = 2e-19
 Identities = 70/102 (68%), Positives = 83/102 (81%), Gaps = 6/102 (5%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFT------QG 54
           F+    EYN TQ+DYRERCKGRIQRQLEITGRTTT+EELE ML++GNPA+F         
Sbjct: 127 FVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSS 186

Query: 55  QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
            +KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q +
Sbjct: 187 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGE 228

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279

 Score = 76.8 bits (188), Expect = 1e-18
 Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 5   WREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQ---GQAKQTLA 61
              YN  Q + + R    + RQ  +   + +++ ++ +++ G   +F+      A+  L 
Sbjct: 151 MTRYNDVQAENKRRYGENVARQCRVVEPSLSDDAIQKVIEHGTEGIFSGMRLEGAEAKLN 210

Query: 62  DIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
           +I  RH DI +LE S+ ELH+MF DM+ LV +Q +
Sbjct: 211 EIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGE 245

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109

 Score = 59.4 bits (144), Expect = 3e-13
 Identities = 31/44 (70%), Positives = 38/44 (86%)

Query: 53 QGQAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
             +KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q +
Sbjct: 6  SSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGE 49

>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68

 Score = 55.0 bits (133), Expect = 5e-12
 Identities = 29/38 (76%), Positives = 35/38 (92%)

Query: 59 TLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
           L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q +
Sbjct: 3  ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGE 40

>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69

 Score = 55.0 bits (133), Expect = 5e-12
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 60 LADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
          LA+++ARH +++KLE S+ EL  +F DM  LV  Q +
Sbjct: 2  LAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQE 38

>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83

 Score = 54.8 bits (132), Expect = 1e-11
 Identities = 31/44 (70%), Positives = 38/44 (86%)

Query: 53 QGQAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
             +KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q +
Sbjct: 6  SSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGE 49

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77

 Score = 53.5 bits (129), Expect = 3e-11
 Identities = 29/37 (78%), Positives = 35/37 (94%)

Query: 60 LADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
          L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q +
Sbjct: 2  LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGE 38

>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Length = 180

 Score = 52.8 bits (126), Expect = 5e-10
 Identities = 31/46 (67%), Positives = 38/46 (82%)

Query: 1   FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTG 46
           F+    +YN TQ DYR+RCK RI+RQ+EITGRTTTNEELE ML++G
Sbjct: 135 FVEVMSDYNTTQIDYRDRCKARIKRQMEITGRTTTNEELEDMLESG 180

>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65

 Score = 49.5 bits (119), Expect = 8e-10
 Identities = 10/36 (27%), Positives = 22/36 (61%)

Query: 61 ADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
          + +  R + I +LE  I +++++F D+ M++  Q D
Sbjct: 2  SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGD 37

>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71

 Score = 48.0 bits (115), Expect = 4e-09
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 65 ARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
           R   I +LE  I +++ +F D+AM++ +Q D
Sbjct: 3  MRETAIQQLEADILDVNQIFKDLAMMIHDQGD 34

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	102
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	99.97
1fio_A	196	SSO1 protein; four helix bundle, alpha helix, memb	99.94
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	99.91
1n7s_B	68	Syntaxin 1A; neuronal snare protein complex, four	99.71
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	99.7
3b5n_B	69	Protein SSO1; snare complex, syntaxin, synaptobrev	99.7
1sfc_B	83	Protein (syntaxin 1A), protein (synaptobrevin 2);	99.7
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	99.66
1gl2_B	65	Syntaxin 7; membrane protein, membrane fusion prot	99.65
2nps_B	71	Syntaxin 13, vesicle-associated membrane protein 4	99.61
3c98_B	279	Syntaxin-1A; protein complex, alternative splicing	99.39
1s94_A	180	S-syntaxin; three helix bundle, structural plastic	99.03
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	86.12
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	84.85
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	83.58

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B

Probab=99.97  E-value=1.5e-30  Score=191.38  Aligned_cols=101  Identities=70%  Similarity=1.054  Sum_probs=97.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhCCCcchhhhh------HHHHHHHHHHHHHHHHHHHH
Q psy15325          1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------QAKQTLADIEARHADIIKLE   74 (102)
Q Consensus         1 F~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~~~~~~f~~~------~~~~~l~~i~~R~~eI~~lE   74 (102)
                      |.++|.+|+.+|..|+++||.+++||++|+||++|+++++.++++|++++|+++      .++.+|.+|++||.+|.+||
T Consensus       127 f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~tdeeie~~ie~g~~~~f~q~~l~~~~~~~~~l~~i~~R~~~i~~ie  206 (267)
T 1dn1_B          127 FVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISKQALSEIETRHSEIIKLE  206 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCSSCTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCCHHHHHHHHhCCcHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999999999999876      67889999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325         75 NSIRELHDMFMDMAMLVENQDDRGNHN  101 (102)
Q Consensus        75 ~si~eL~qlF~Dla~LV~~QGe~id~~  101 (102)
                      ++|.|||+||.|||+||++||++||+|
T Consensus       207 ~~i~el~~if~dla~lV~~Qg~~id~I  233 (267)
T 1dn1_B          207 NSIRELHDMFMDMAMLVESQGEMIDRI  233 (267)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHCSGGGCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            999999999999999999999999987

>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1

Probab=99.94  E-value=1.7e-27  Score=166.88  Aligned_cols=95  Identities=37%  Similarity=0.627  Sum_probs=88.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhC-CCcchhhhh--------HHHHHHHHHHHHHHHHH
Q psy15325          1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDT-GNPAVFTQG--------QAKQTLADIEARHADII   71 (102)
Q Consensus         1 F~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~-~~~~~f~~~--------~~~~~l~~i~~R~~eI~   71 (102)
                      |.++|..|+.+|..|+++||.+++|++++++|++++++++.++++ |++++|+++        .++.++++|++||++|+
T Consensus        93 f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i~~~~~~~~e~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~i~eR~~eI~  172 (196)
T 1fio_A           93 FLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQELL  172 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHTSHHHHHHHHHHHTC------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHcCCchhHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999875 466788765        36789999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHhh
Q psy15325         72 KLENSIRELHDMFMDMAMLVENQD   95 (102)
Q Consensus        72 ~lE~si~eL~qlF~Dla~LV~~QG   95 (102)
                      +||+||.|||+||+|||+||++||
T Consensus       173 ~IE~sI~EL~qiF~Dla~LV~~QG  196 (196)
T 1fio_A          173 KLEKSMAELTQLFNDMEELVIEQQ  196 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999998

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}

Probab=99.91  E-value=1.8e-26  Score=169.93  Aligned_cols=101  Identities=29%  Similarity=0.513  Sum_probs=84.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhCCCcchhhhh---HHHHHHHHHHHHHHHHHHHHHhH
Q psy15325          1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG---QAKQTLADIEARHADIIKLENSI   77 (102)
Q Consensus         1 F~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~~~~~~f~~~---~~~~~l~~i~~R~~eI~~lE~si   77 (102)
                      |.++|..|+.+|..|++++|.++.|++.+++|.+++++++.++++|++.+|++.   .++.++++|++||++|.+||++|
T Consensus       147 f~~~~~~Fq~~Q~~y~e~~k~~~~R~~~i~~~~~~~ee~~~~~e~g~~~~f~q~~~~~~~~~~~~i~eR~~eI~~Ie~~i  226 (279)
T 2xhe_B          147 FVKVMTRYNDVQAENKRRYGENVARQCRVVEPSLSDDAIQKVIEHGTEGIFSGMRLEGAEAKLNEIRDRHKDIQQLERSL  226 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTTSCCSSCCCCSSTTHHHHHHHC-----------------CTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            688999999999999999999999999999999999999999998888888753   56778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325         78 RELHDMFMDMAMLVENQDDRGNHN  101 (102)
Q Consensus        78 ~eL~qlF~Dla~LV~~QGe~id~~  101 (102)
                      .||++||.|||+||++||++||+|
T Consensus       227 ~el~~if~dla~lV~~Qg~~id~I  250 (279)
T 2xhe_B          227 LELHEMFTDMSTLVASQGEMIDRI  250 (279)
T ss_dssp             HHHHHHHHHHHTTTTTSCSSTTCH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHH
Confidence            999999999999999999999987

>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B

Probab=99.71  E-value=4.8e-18  Score=101.96  Aligned_cols=44  Identities=66%  Similarity=0.951  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325         58 QTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN  101 (102)
Q Consensus        58 ~~l~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~  101 (102)
                      ++|+++++||++|.+||++|.||++||.|||.||++||++||+|
T Consensus         2 ~~l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~I   45 (68)
T 1n7s_B            2 SALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRI   45 (68)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            46899999999999999999999999999999999999999987

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B

Probab=99.70  E-value=1.2e-17  Score=102.36  Aligned_cols=43  Identities=67%  Similarity=0.971  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325         59 TLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN  101 (102)
Q Consensus        59 ~l~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~  101 (102)
                      +|+++++||++|.+||++|.||++||.|||+||++||++||+|
T Consensus         1 ~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~I   43 (77)
T 1jth_B            1 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRI   43 (77)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            4789999999999999999999999999999999999999987

>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=99.70  E-value=1.4e-17  Score=100.24  Aligned_cols=43  Identities=40%  Similarity=0.625  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325         59 TLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN  101 (102)
Q Consensus        59 ~l~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~  101 (102)
                      +|+++++||.+|.+||++|.||++||.|||.||++||++||+|
T Consensus         1 al~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~I   43 (69)
T 3b5n_B            1 ALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVI   43 (69)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            4789999999999999999999999999999999999999987

>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B

Probab=99.70  E-value=1e-17  Score=104.09  Aligned_cols=47  Identities=66%  Similarity=0.925  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325         55 QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN  101 (102)
Q Consensus        55 ~~~~~l~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~  101 (102)
                      .++.+++++++||++|.+||++|.||++||.|||+||++||++||+|
T Consensus         8 ~~~~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~I   54 (83)
T 1sfc_B            8 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRI   54 (83)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            46778999999999999999999999999999999999999999987

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=99.66  E-value=8.4e-17  Score=104.51  Aligned_cols=47  Identities=66%  Similarity=0.925  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325         55 QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN  101 (102)
Q Consensus        55 ~~~~~l~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~  101 (102)
                      .++++|+++++||++|.+||++|.|||+||.|||+||++||++||+|
T Consensus         8 ~a~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~I   54 (109)
T 3hd7_B            8 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRI   54 (109)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            57889999999999999999999999999999999999999999986

>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=99.65  E-value=7.8e-17  Score=95.91  Aligned_cols=41  Identities=24%  Similarity=0.501  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325         61 ADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN  101 (102)
Q Consensus        61 ~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~  101 (102)
                      +.+++||++|.+||++|.||++||.|||.||++||++||+|
T Consensus         2 ~~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~I   42 (65)
T 1gl2_B            2 SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSI   42 (65)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999987

>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=99.61  E-value=4.6e-16  Score=93.94  Aligned_cols=38  Identities=29%  Similarity=0.488  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325         64 EARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN  101 (102)
Q Consensus        64 ~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~  101 (102)
                      ++||.+|.+||++|.||++||.|||.||++||++||+|
T Consensus         2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~I   39 (71)
T 2nps_B            2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSI   39 (71)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            48999999999999999999999999999999999987

>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}

Probab=99.39  E-value=2.6e-12  Score=91.84  Aligned_cols=102  Identities=70%  Similarity=1.047  Sum_probs=85.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhCCCcchhhhh------HHHHHHHHHHHHHHHHHHHH
Q psy15325          1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------QAKQTLADIEARHADIIKLE   74 (102)
Q Consensus         1 F~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~~~~~~f~~~------~~~~~l~~i~~R~~eI~~lE   74 (102)
                      |..++.+|...+..|...++..+.+.+..+++.+++.+.......+.+..+...      .....+..+.+|+..|..|+
T Consensus       139 ~a~~~a~~~~~~~~~~~vva~evr~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~I~  218 (279)
T 3c98_B          139 FVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISKQALSEIETRHSEIIKLE  218 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSCCTTSSTTTSCSCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346788999999999999999999999999999988775554444433332221      55777899999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q psy15325         75 NSIRELHDMFMDMAMLVENQDDRGNHNN  102 (102)
Q Consensus        75 ~si~eL~qlF~Dla~LV~~QGe~id~~~  102 (102)
                      .+|.+|+++|.|||.+|++||+++|+|+
T Consensus       219 ~~i~ei~~~~~~ia~~v~eQ~~~~~~I~  246 (279)
T 3c98_B          219 NSIRELHDMFMDMAMLVESQGEMIDRIE  246 (279)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHCSGGGCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999873

>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1

Probab=99.03  E-value=5.6e-12  Score=87.28  Aligned_cols=46  Identities=67%  Similarity=1.078  Sum_probs=21.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhCC
Q psy15325          1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTG   46 (102)
Q Consensus         1 F~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~~   46 (102)
                      |.++|..||.+|..|+++||.+++||+.|+||++|+++|+++|++|
T Consensus       135 f~~~m~~yq~~q~~y~~~~K~~i~Rq~~I~~~~~teeeie~~ie~G  180 (180)
T 1s94_A          135 FVEVMSDYNTTQIDYRDRCKARIKRQMEITGRTTTNEELEDMLESG  180 (180)
T ss_dssp             HHHHHHHHHHHHHSCTTCCCCC------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCc
Confidence            7899999999999999999999999999999999999999999876

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B

Probab=86.12  E-value=0.93  Score=25.74  Aligned_cols=34  Identities=18%  Similarity=0.301  Sum_probs=31.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325         68 ADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN  101 (102)
Q Consensus        68 ~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~  101 (102)
                      ..+-.|..++..|+.|-.+|+.=|..|..+||++
T Consensus        10 ~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l   43 (66)
T 1n7s_D           10 ENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRI   43 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677899999999999999999999999999976

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=84.85  E-value=1.2  Score=25.23  Aligned_cols=34  Identities=15%  Similarity=0.130  Sum_probs=31.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325         68 ADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN  101 (102)
Q Consensus        68 ~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~  101 (102)
                      ..+-.|..++..|+.|-.+|+.=|..|..+||++
T Consensus         9 ~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l   42 (65)
T 1gl2_D            9 AGLDALSSIISRQKQMGQEIGNELDEQNEIIDDL   42 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            5677899999999999999999999999999975

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=83.58  E-value=1.3  Score=26.65  Aligned_cols=35  Identities=17%  Similarity=0.296  Sum_probs=32.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325         67 HADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN  101 (102)
Q Consensus        67 ~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~  101 (102)
                      -..+-.|...+..|+.|-.+|+.=|..|.++||++
T Consensus        28 D~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i   62 (87)
T 1sfc_D           28 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRI   62 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678899999999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	102
d1fioa_	196	a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c	3e-14

>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.8 bits (152), Expect = 3e-14
 Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 9/99 (9%)

Query: 5   WREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAML-DTGNPAVFTQ--------GQ 55
            ++Y    ++Y+E  K + +RQ  I     T +E+EA + D G   +F+Q        G+
Sbjct: 97  IQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGE 156

Query: 56  AKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
           AK  LA+++ARH +++KLE S+ EL  +F DM  LV  Q
Sbjct: 157 AKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQ 195

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	102
d1fioa_	196	Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.83
d1kxpd3	69	Vitamin D binding protein {Human (Homo sapiens) [T	83.35

>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=4.7e-21  Score=130.19  Aligned_cols=94  Identities=36%  Similarity=0.595  Sum_probs=84.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhCC-Ccchhhhh--------HHHHHHHHHHHHHHHHH
Q psy15325          1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTG-NPAVFTQG--------QAKQTLADIEARHADII   71 (102)
Q Consensus         1 F~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~~-~~~~f~~~--------~~~~~l~~i~~R~~eI~   71 (102)
                      |.+++..|+..|..|++++|.++.|++.+++|++++++++..+.++ ....|.+.        +.+..+.++++||++|.
T Consensus        93 l~~~~~~f~~~q~~~~~~~k~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eR~~eI~  172 (196)
T d1fioa_          93 FLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQELL  172 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHTSHHHHHHHHHHHTC------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccchhhhHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999887654 33444433        56788999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHh
Q psy15325         72 KLENSIRELHDMFMDMAMLVENQ   94 (102)
Q Consensus        72 ~lE~si~eL~qlF~Dla~LV~~Q   94 (102)
                      +||++|.||++||.|||.||++|
T Consensus       173 ~Ie~sI~eL~~iF~dLa~LV~eQ  195 (196)
T d1fioa_         173 KLEKSMAELTQLFNDMEELVIEQ  195 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHhHHHHHHHHHHHHHHHHcc
Confidence            99999999999999999999988

>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Serum albumin-like
superfamily: Serum albumin-like
family: Serum albumin-like
domain: Vitamin D binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.35  E-value=1.1  Score=24.68  Aligned_cols=29  Identities=21%  Similarity=0.449  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhC
Q psy15325         13 TDYRERCKGRIQRQLEITGRTTTNEELEAMLDT   45 (102)
Q Consensus        13 ~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~   45 (102)
                      .+||+++.+++.+.    -|++++.++.+|++.
T Consensus        12 te~kkkL~e~lr~k----~P~as~~~l~~mVek   40 (69)
T d1kxpd3          12 TEYKKKLAERLKAK----LPDATPKELAKLVNK   40 (69)
T ss_dssp             HHHHHHHHHHHHHH----CTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh----CCCCCHHHHHHHHHH
Confidence            35777776666544    699999999999863