Psyllid ID: psy15340

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPESGRKFPISSGIPNMLLKEDEI
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHEEccEEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHcccccccccccccHHHccHHHHHHHHHHHHEEEEEEccEEEccccccEEEccccccccccccccc
Coil and Loop (DISEMBL)
MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVvegdlecpesgrkfpissgipnmllkedei
Flexible Loop (DISEMBL)
MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVvegdlecpesgrkfpissgipnmllkedei
Low Complexity Region (SEG)
MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLevevveGDLECPESGRKFPISSGIPNMLLKEDEI
Disordered region (IsUnstruct)
****LDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLEC***********************
Disordered Region (DISOPRED)
MIPKLDWSAFYKATLMLGDAEI**********EKDSEFLKKVHHALLEVEVVEGDLECPESGRKFPISSGIPNMLLK****
Disordered Region (DISEMBL)
MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPESGRKFPISSGIPNMLLKEDEI
Disordered Region (DISPRO)
MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPESGRKFPISSGIPNMLLK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPESGRKFPISSGIPNMLLKEDEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	81	2.2.26 [Sep-21-2011]
Q9UI30	125	tRNA methyltransferase 11	yes	N/A	0.962	0.624	0.587	7e-21
Q9DCG9	125	tRNA methyltransferase 11	yes	N/A	0.962	0.624	0.562	5e-20
Q2KIA2	125	tRNA methyltransferase 11	yes	N/A	0.962	0.624	0.575	6e-20
Q9C9R3	124	TRM112-like protein At1g7	yes	N/A	1.0	0.653	0.469	1e-14
Q9VP65	124	TRM112-like protein OS=Dr	yes	N/A	0.962	0.629	0.518	1e-12
Q54N57	128	TRM112-like protein OS=Di	yes	N/A	0.864	0.546	0.458	1e-11
Q09723	126	Multifunctional methyltra	yes	N/A	0.950	0.611	0.428	1e-11
Q8LFJ5	124	TRM112-like protein At1g2	no	N/A	0.975	0.637	0.506	7e-09
O45241	125	TRM112-like protein OS=Ca	yes	N/A	0.913	0.592	0.342	3e-06
Q8X0S4	127	Protein trm-112 OS=Neuros	N/A	N/A	0.938	0.598	0.276	1e-05

>sp|Q9UI30|TR112_HUMAN tRNA methyltransferase 112 homolog OS=Homo sapiens GN=TRMT112 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 61/80 (76%), Gaps = 2/80 (2%)

Query: 1   MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPE 60
           MIPK++WSAF +A   L    I +P+  ++ YE++ EFL+ +HH LLEVEV+EG L+CPE
Sbjct: 45  MIPKVEWSAFLEAADNL--RLIQVPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPE 102

Query: 61  SGRKFPISSGIPNMLLKEDE 80
           SGR FPIS GIPNMLL E+E
Sbjct: 103 SGRMFPISRGIPNMLLSEEE 122

Participates both in methylation of protein and tRNA species. The heterodimer with HEMK2/N6AMT1 catalyzes N5-methylation of ETF1 on 'Gln-185', using S-adenosyl L-methionine as methyl donor. The heterodimer with ALKBH8 catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA species.
Homo sapiens (taxid: 9606)

>sp|Q9DCG9|TR112_MOUSE tRNA methyltransferase 112 homolog OS=Mus musculus GN=Trmt112 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 60/80 (75%), Gaps = 2/80 (2%)

Query: 1   MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPE 60
           MIPK++W+A  +A   L  AE+  P++  + YE D  FL+K+HH LLEV+V+EG L+CPE
Sbjct: 45  MIPKVEWAALVQAADTLNLAEV--PKEPTEGYEHDETFLRKMHHVLLEVDVLEGTLQCPE 102

Query: 61  SGRKFPISSGIPNMLLKEDE 80
           SGR FPIS GIPNMLL ++E
Sbjct: 103 SGRLFPISRGIPNMLLNDEE 122

Participates both in methylation of protein and tRNA species. The heterodimer with HEMK2/N6AMT1 catalyzes N5-methylation of ETF1 on 'Gln-185', using S-adenosyl L-methionine as methyl donor. The heterodimer with ALKBH8 catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA species.

Mus musculus (taxid: 10090)

>sp|Q2KIA2|TR112_BOVIN tRNA methyltransferase 112 homolog OS=Bos taurus GN=TRMT112 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 46/80 (57%), Positives = 60/80 (75%), Gaps = 2/80 (2%)

Query: 1   MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPE 60
           MIPK++W+A  +A   L    I +P++ I  YE + EFL+K+HH LLEVEV+EG L+CPE
Sbjct: 45  MIPKVEWAALLEAADHL--HLIQVPKEPIQGYEHNEEFLRKMHHVLLEVEVLEGTLQCPE 102

Query: 61  SGRKFPISSGIPNMLLKEDE 80
           SGR FPIS GIPNMLL ++E
Sbjct: 103 SGRVFPISRGIPNMLLSDEE 122

Participates both in methylation of protein and tRNA species. The heterodimer with HEMK2/N6AMT1 catalyzes N5-methylation of ETF1 on 'Gln-185', using S-adenosyl L-methionine as methyl donor. The heterodimer with ALKBH8 catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA species.

Bos taurus (taxid: 9913)

>sp|Q9C9R3|T112B_ARATH TRM112-like protein At1g78190 OS=Arabidopsis thaliana GN=At1g78190 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 48/81 (59%)

Query: 1   MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPE 60
           M  K+DW A       +   E+        + E D  FL+K HHALLE+ + EG L CPE
Sbjct: 44  MFAKIDWKALVDGARSMEYTELPDNAPDTTTLESDETFLRKFHHALLELHLEEGSLVCPE 103

Query: 61  SGRKFPISSGIPNMLLKEDEI 81
           +GRKF +S GIPNMLL EDE+
Sbjct: 104 TGRKFSVSKGIPNMLLHEDEV 124

Arabidopsis thaliana (taxid: 3702)

>sp|Q9VP65|TR112_DROME TRM112-like protein OS=Drosophila melanogaster GN=CG12975 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 59/83 (71%), Gaps = 5/83 (6%)

Query: 1   MIPKLDWSAFYKATLMLGDAEIS--IPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLEC 58
           ++PKLDWSA Y A  +   AE++  IP    ++  ++   L+K+HH L E++V+EG LEC
Sbjct: 45  ILPKLDWSAVYGAAQV---AELTEDIPAVQPENIVENELLLQKLHHLLFEIDVLEGQLEC 101

Query: 59  PESGRKFPISSGIPNMLLKEDEI 81
           PE+GR FPIS GIPNMLL EDE+
Sbjct: 102 PETGRVFPISDGIPNMLLNEDEV 124

Drosophila melanogaster (taxid: 7227)

>sp|Q54N57|TR112_DICDI TRM112-like protein OS=Dictyostelium discoideum GN=DDB_G0285489 PE=3 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 15/85 (17%)

Query: 3   PKLDWSAFYKATLMLGDAEISIPEKL---IDSYE---KDSEFLKKVHHALLEVEVVEGDL 56
           PKLDW         LG AEISI   +   +D+ +   +D EFLK +H+ L  ++V+ G L
Sbjct: 47  PKLDW---------LGIAEISIKFNIPIQLDTTKHSLEDEEFLKTLHNLLCNLKVITGSL 97

Query: 57  ECPESGRKFPISSGIPNMLLKEDEI 81
            CP   R +PI  GIPNMLL+EDEI
Sbjct: 98  TCPNCQRVYPIDKGIPNMLLREDEI 122

Dictyostelium discoideum (taxid: 44689)

>sp|Q09723|TR112_SCHPO Multifunctional methyltransferase subunit trm112 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trm112 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 7/84 (8%)

Query: 1   MIPKLDWSAFYKATLMLGDAEISIPEK---LIDSYEKDSEFLKKVHHALLEVEVVEGDLE 57
           ++P++DW+A  K T  LG+   S+P++   L+D  + D   LK +H+ LLE E+ EG + 
Sbjct: 47  IMPRIDWNALLKTTRQLGN--YSLPDEKPDLVD--DSDEVLLKSLHNVLLETEITEGKMV 102

Query: 58  CPESGRKFPISSGIPNMLLKEDEI 81
           C   G  +PI  GIPNMLL E EI
Sbjct: 103 CGNCGHVYPIFEGIPNMLLSESEI 126

Together with mtq2, required for the methylation of eRF1 on 'Gln-182'. Together with trm11, required for the formation of 2-methylguanosine at position 10 in tRNA. Probably has additional functions.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8LFJ5|T112A_ARATH TRM112-like protein At1g22270 OS=Arabidopsis thaliana GN=At1g22270 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 57/83 (68%), Gaps = 4/83 (4%)

Query: 1   MIPKLDWSAFYKATLMLGDAEISIPEKLIDS--YEKDSEFLKKVHHALLEVEVVEGDLEC 58
           M  K++W A  +    +G AE+  PE+  D+   + D  FLKK+HHALLE+ + EG L C
Sbjct: 44  MFAKIEWKALVEGARSMGYAEL--PEESPDAAVLKSDEPFLKKLHHALLELHLEEGALVC 101

Query: 59  PESGRKFPISSGIPNMLLKEDEI 81
           PE+GRKFP++ GIPNMLL EDE+
Sbjct: 102 PETGRKFPVNKGIPNMLLHEDEV 124

Arabidopsis thaliana (taxid: 3702)

>sp|O45241|TR112_CAEEL TRM112-like protein OS=Caenorhabditis elegans GN=C04H5.1 PE=3 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 1   MIPKLDWSAFYKATLMLGDAEISIPEKLIDSY-EKDSEFLKKVHHALLEVEVVEGDLECP 59
           M+ ++ + A   A   +  ++  IP +  + + E   E L+  HH L+ ++V++G+L CP
Sbjct: 45  MLDRIQYEALIVAAAAVNQSD-RIPREKPEKWDELTDEQLRVFHHLLMNIDVIDGELICP 103

Query: 60  ESGRKFPISSGIPNML 75
           E+   FPI  GIPNML
Sbjct: 104 ETKTVFPIRDGIPNML 119

Caenorhabditis elegans (taxid: 6239)

>sp|Q8X0S4|TR112_NEUCR Protein trm-112 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=trm-112 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 41/76 (53%)

Query: 1   MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPE 60
           ++P++DW+A    +  LG   +       +  + D   LK++H  L+E +++EG L C  
Sbjct: 47  VLPRIDWAALRTTSTELGFPTLPEQPPSPEDLQSDEALLKELHELLMETQMMEGKLVCGH 106

Query: 61  SGRKFPISSGIPNMLL 76
            G ++ + +G+ N LL
Sbjct: 107 CGHEYAVKNGVANFLL 122

Required for the formation of 2-methylguanosine at position 10 in tRNA.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
241122398	124	conserved hypothetical protein [Ixodes s	0.987	0.645	0.629	1e-22
156550368	124	PREDICTED: tRNA methyltransferase 112 ho	0.987	0.645	0.641	2e-22
427786165	124	Hypothetical protein [Rhipicephalus pulc	0.987	0.645	0.617	4e-22
442757345	124	Hypothetical protein [Ixodes ricinus]	0.987	0.645	0.617	4e-22
328792738	124	PREDICTED: tRNA methyltransferase 112 ho	0.987	0.645	0.604	1e-21
307188152	124	TRM112-like protein [Camponotus floridan	0.987	0.645	0.617	2e-21
410913557	123	PREDICTED: tRNA methyltransferase 112 ho	0.987	0.650	0.629	2e-21
91079885	124	PREDICTED: similar to predicted protein	0.987	0.645	0.543	2e-21
383861109	124	PREDICTED: tRNA methyltransferase 112 ho	0.987	0.645	0.604	3e-21
47225269	123	unnamed protein product [Tetraodon nigro	0.975	0.642	0.625	5e-21

>gi|241122398|ref|XP_002403549.1| conserved hypothetical protein [Ixodes scapularis] gi|215493454|gb|EEC03095.1| conserved hypothetical protein [Ixodes scapularis]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/81 (62%), Positives = 62/81 (76%), Gaps = 1/81 (1%)

Query: 1   MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPE 60
           MIPKLDW A Y+A   LG A   +P+ L  +YE D +FLK+ HHAL EVEV+ GDL CPE
Sbjct: 45  MIPKLDWDALYQAAESLGCAA-DLPKSLAPNYEHDQDFLKQAHHALFEVEVISGDLVCPE 103

Query: 61  SGRKFPISSGIPNMLLKEDEI 81
           +GRKFPI++GIPNMLL EDE+
Sbjct: 104 TGRKFPITNGIPNMLLNEDEV 124

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550368|ref|XP_001607595.1| PREDICTED: tRNA methyltransferase 112 homolog [Nasonia vitripennis]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 64/81 (79%), Gaps = 1/81 (1%)

Query: 1   MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPE 60
           +IPKLD++AFYKA   +G A   +P +LI  YE + EFLKK+HH LLEVE++ G+L CPE
Sbjct: 45  IIPKLDYTAFYKAAESVGYAG-DLPPQLIQDYENNEEFLKKMHHVLLEVEIINGELLCPE 103

Query: 61  SGRKFPISSGIPNMLLKEDEI 81
           SGRKFPIS GIPNMLL EDE+
Sbjct: 104 SGRKFPISDGIPNMLLNEDEV 124

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427786165|gb|JAA58534.1| Hypothetical protein [Rhipicephalus pulchellus]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 62/81 (76%), Gaps = 1/81 (1%)

Query: 1   MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPE 60
           MIPKLDW A Y+A   +G A   +P+ L+  YE + EFLK+VHH L EVEVV G+L CPE
Sbjct: 45  MIPKLDWDALYQAAESIGVAA-DLPKALVPDYEHNEEFLKRVHHTLFEVEVVAGELVCPE 103

Query: 61  SGRKFPISSGIPNMLLKEDEI 81
           +GRKFPI++GIPNMLL EDE+
Sbjct: 104 TGRKFPITNGIPNMLLNEDEV 124

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442757345|gb|JAA70831.1| Hypothetical protein [Ixodes ricinus]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 62/81 (76%), Gaps = 1/81 (1%)

Query: 1   MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPE 60
           MIPKLDW A Y+A   LG A   +P+ L  +YE D +FLK+ HHAL EVEV+ G+L CPE
Sbjct: 45  MIPKLDWDALYQAAESLGCAA-DLPKSLAPNYEHDQDFLKQAHHALFEVEVISGELVCPE 103

Query: 61  SGRKFPISSGIPNMLLKEDEI 81
           +GRKFPI++GIPNMLL EDE+
Sbjct: 104 TGRKFPITNGIPNMLLNEDEV 124

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328792738|ref|XP_001119891.2| PREDICTED: tRNA methyltransferase 112 homolog [Apis mellifera] gi|380023338|ref|XP_003695480.1| PREDICTED: tRNA methyltransferase 112 homolog [Apis florea]

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 61/81 (75%), Gaps = 1/81 (1%)

Query: 1   MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPE 60
           +IPKLDW+  +KA   +G     +P+ LI  +E + EFLKKVHH LLEVE++ GDL CPE
Sbjct: 45  IIPKLDWATLWKAAESIGHVG-ELPQTLIQDFETNEEFLKKVHHVLLEVEIINGDLLCPE 103

Query: 61  SGRKFPISSGIPNMLLKEDEI 81
           SGRKFPI+ GIPNMLL EDE+
Sbjct: 104 SGRKFPINDGIPNMLLNEDEV 124

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307188152|gb|EFN72984.1| TRM112-like protein [Camponotus floridanus]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 62/81 (76%), Gaps = 1/81 (1%)

Query: 1   MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPE 60
           +IPKLDW+  +KA   +G     +P+ LI+ +E + +FLKKVHH LLEVEV+ GDL CPE
Sbjct: 45  IIPKLDWTVLWKAAESIGHVG-ELPQILIEDFESNDDFLKKVHHVLLEVEVINGDLLCPE 103

Query: 61  SGRKFPISSGIPNMLLKEDEI 81
           SGRKFPI+ GIPNMLL EDEI
Sbjct: 104 SGRKFPINDGIPNMLLNEDEI 124

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|410913557|ref|XP_003970255.1| PREDICTED: tRNA methyltransferase 112 homolog [Takifugu rubripes]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/81 (62%), Positives = 62/81 (76%), Gaps = 1/81 (1%)

Query: 1   MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPE 60
           MIPKL+WSA  +A   LG  +  +PE+L+  Y KD  FLKKVH  LLEVEV+EG L+CPE
Sbjct: 44  MIPKLEWSALVQAAEELGQKQ-DLPEQLVADYGKDEAFLKKVHRILLEVEVMEGSLKCPE 102

Query: 61  SGRKFPISSGIPNMLLKEDEI 81
           SGR+FPI+ GIPNMLL EDE+
Sbjct: 103 SGREFPITRGIPNMLLNEDEV 123

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|91079885|ref|XP_967890.1| PREDICTED: similar to predicted protein [Tribolium castaneum] gi|270004559|gb|EFA01007.1| hypothetical protein TcasGA2_TC003920 [Tribolium castaneum]

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 64/81 (79%), Gaps = 1/81 (1%)

Query: 1   MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPE 60
           +IPK+DW+  Y A   +G  E  +P+ ++++YE D EFLKK HHALLE++++ G+L CPE
Sbjct: 45  IIPKVDWNVLYNAAQSIGQLE-GLPKDVVENYENDHEFLKKAHHALLEIDIINGELICPE 103

Query: 61  SGRKFPISSGIPNMLLKEDEI 81
           +GRKFPI++GIPN+LL EDE+
Sbjct: 104 TGRKFPINNGIPNLLLNEDEV 124

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861109|ref|XP_003706029.1| PREDICTED: tRNA methyltransferase 112 homolog [Megachile rotundata]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 61/81 (75%), Gaps = 1/81 (1%)

Query: 1   MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPE 60
           +IPKLDW+  +KA   +G     +P+ LI  +E + +FLKKVHH LLEVEV+ GDL CPE
Sbjct: 45  IIPKLDWATLWKAAESIGHVG-ELPQTLIQDFETNEDFLKKVHHVLLEVEVINGDLLCPE 103

Query: 61  SGRKFPISSGIPNMLLKEDEI 81
           SGRKFPI+ GIPNMLL EDE+
Sbjct: 104 SGRKFPINDGIPNMLLNEDEL 124

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|47225269|emb|CAG09769.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 62/80 (77%), Gaps = 1/80 (1%)

Query: 1   MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPE 60
           MIPKL+W A  +A   LG  +  +P++++  YEKD EFL+KVH  LLEVEV+EG L+CPE
Sbjct: 44  MIPKLEWGALVQAAEELGQKQ-DLPDQVVADYEKDEEFLRKVHRVLLEVEVMEGCLKCPE 102

Query: 61  SGRKFPISSGIPNMLLKEDE 80
           SGR+FPIS GIPNMLL EDE
Sbjct: 103 SGREFPISRGIPNMLLNEDE 122

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
UNIPROTKB|Q9UI30	125	TRMT112 "tRNA methyltransferas	0.962	0.624	0.525	2e-17
MGI|MGI:1914924	125	Trmt112 "tRNA methyltransferas	0.962	0.624	0.512	5.3e-17
RGD|1309710	125	Trmt112 "tRNA methyltransferas	0.962	0.624	0.512	5.3e-17
TAIR|locus:2196536	124	AT1G22270 "AT1G22270" [Arabido	0.975	0.637	0.481	9.8e-16
FB|FBgn0037061	124	CG12975 [Drosophila melanogast	0.987	0.645	0.469	6.9e-15
TAIR|locus:2194724	124	AT1G78190 "AT1G78190" [Arabido	0.975	0.637	0.457	6.2e-14
POMBASE|SPAC31A2.02	126	trm112 "protein and tRNA methy	0.975	0.626	0.390	5.8e-11
DICTYBASE|DDB_G0285489	128	DDB_G0285489 "TRM112 family pr	0.864	0.546	0.447	2.5e-10
GENEDB_PFALCIPARUM|PF14_0072	125	PF14_0072 "hypothetical protei	0.888	0.576	0.36	3.3e-08
UNIPROTKB|Q8IM19	125	PF14_0072 "Nucleolar preriboso	0.888	0.576	0.36	3.3e-08

UNIPROTKB|Q9UI30 TRMT112 "tRNA methyltransferase 112 homolog" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 42/80 (52%), Positives = 55/80 (68%)

Query:     1 MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLXXXXXXGDLECPE 60
             MIPK++WSAF +A   L    I +P+  ++ YE++ EFL+ +HH LL      G L+CPE
Sbjct:    45 MIPKVEWSAFLEAADNL--RLIQVPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPE 102

Query:    61 SGRKFPISSGIPNMLLKEDE 80
             SGR FPIS GIPNMLL E+E
Sbjct:   103 SGRMFPISRGIPNMLLSEEE 122

GO:0005515 "protein binding" evidence=IPI

GO:0018364 "peptidyl-glutamine methylation" evidence=IDA

GO:0008276 "protein methyltransferase activity" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

MGI|MGI:1914924 Trmt112 "tRNA methyltransferase 11-2" [Mus musculus (taxid:10090)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 41/80 (51%), Positives = 54/80 (67%)

Query:     1 MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLXXXXXXGDLECPE 60
             MIPK++W+A  +A   L  AE+  P++  + YE D  FL+K+HH LL      G L+CPE
Sbjct:    45 MIPKVEWAALVQAADTLNLAEV--PKEPTEGYEHDETFLRKMHHVLLEVDVLEGTLQCPE 102

Query:    61 SGRKFPISSGIPNMLLKEDE 80
             SGR FPIS GIPNMLL ++E
Sbjct:   103 SGRLFPISRGIPNMLLNDEE 122

GO:0008276 "protein methyltransferase activity" evidence=ISO

GO:0018364 "peptidyl-glutamine methylation" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

RGD|1309710 Trmt112 "tRNA methyltransferase 11-2 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 41/80 (51%), Positives = 54/80 (67%)

Query:     1 MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLXXXXXXGDLECPE 60
             MIPK++W+A  +A   L  AE+  P++  + YE D  FL+K+HH LL      G L+CPE
Sbjct:    45 MIPKVEWAALVQAADTLNLAEV--PKEPTEGYEHDETFLRKMHHVLLEVDVLEGTLQCPE 102

Query:    61 SGRKFPISSGIPNMLLKEDE 80
             SGR FPIS GIPNMLL ++E
Sbjct:   103 SGRLFPISRGIPNMLLNDEE 122

GO:0008276 "protein methyltransferase activity" evidence=ISO

GO:0018364 "peptidyl-glutamine methylation" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

TAIR|locus:2196536 AT1G22270 "AT1G22270" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 40/83 (48%), Positives = 53/83 (63%)

Query:     1 MIPKLDWSAFYKATLMLGDAEISIPEKLIDS--YEKDSEFLKKVHHALLXXXXXXGDLEC 58
             M  K++W A  +    +G AE+  PE+  D+   + D  FLKK+HHALL      G L C
Sbjct:    44 MFAKIEWKALVEGARSMGYAEL--PEESPDAAVLKSDEPFLKKLHHALLELHLEEGALVC 101

Query:    59 PESGRKFPISSGIPNMLLKEDEI 81
             PE+GRKFP++ GIPNMLL EDE+
Sbjct:   102 PETGRKFPVNKGIPNMLLHEDEV 124

GO:0003674 "molecular_function" evidence=ND

GO:0035265 "organ growth" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

FB|FBgn0037061 CG12975 [Drosophila melanogaster (taxid:7227)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 38/81 (46%), Positives = 50/81 (61%)

Query:     1 MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLXXXXXXGDLECPE 60
             ++PKLDWSA Y A   + +    IP    ++  ++   L+K+HH L       G LECPE
Sbjct:    45 ILPKLDWSAVYGAA-QVAELTEDIPAVQPENIVENELLLQKLHHLLFEIDVLEGQLECPE 103

Query:    61 SGRKFPISSGIPNMLLKEDEI 81
             +GR FPIS GIPNMLL EDE+
Sbjct:   104 TGRVFPISDGIPNMLLNEDEV 124

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2194724 AT1G78190 "AT1G78190" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 38/83 (45%), Positives = 47/83 (56%)

Query:     1 MIPKLDWSAFYKATLMLGDAEISIPEKLIDS--YEKDSEFLKKVHHALLXXXXXXGDLEC 58
             M  K+DW A       +   E+  P+   D+   E D  FL+K HHALL      G L C
Sbjct:    44 MFAKIDWKALVDGARSMEYTEL--PDNAPDTTTLESDETFLRKFHHALLELHLEEGSLVC 101

Query:    59 PESGRKFPISSGIPNMLLKEDEI 81
             PE+GRKF +S GIPNMLL EDE+
Sbjct:   102 PETGRKFSVSKGIPNMLLHEDEV 124

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPAC31A2.02 trm112 "protein and tRNA methyltransferase regulatory subunit Trm112 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 32/82 (39%), Positives = 46/82 (56%)

Query:     1 MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSE-FLKKVHHALLXXXXXXGDLECP 59
             ++P++DW+A  K T  LG+   S+P++  D  +   E  LK +H+ LL      G + C 
Sbjct:    47 IMPRIDWNALLKTTRQLGN--YSLPDEKPDLVDDSDEVLLKSLHNVLLETEITEGKMVCG 104

Query:    60 ESGRKFPISSGIPNMLLKEDEI 81
               G  +PI  GIPNMLL E EI
Sbjct:   105 NCGHVYPIFEGIPNMLLSESEI 126

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0018364 "peptidyl-glutamine methylation" evidence=ISO

GO:0030234 "enzyme regulator activity" evidence=ISO

GO:0030488 "tRNA methylation" evidence=ISO

GO:0035657 "eRF1 methyltransferase complex" evidence=ISO

GO:0043528 "tRNA (m2G10) methyltransferase complex" evidence=ISO

DICTYBASE|DDB_G0285489 DDB_G0285489 "TRM112 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 38/85 (44%), Positives = 47/85 (55%)

Query:     3 PKLDWSAFYKATLMLGDAEISIPEKL---IDSYE---KDSEFLKKVHHALLXXXXXXGDL 56
             PKLDW         LG AEISI   +   +D+ +   +D EFLK +H+ L       G L
Sbjct:    47 PKLDW---------LGIAEISIKFNIPIQLDTTKHSLEDEEFLKTLHNLLCNLKVITGSL 97

Query:    57 ECPESGRKFPISSGIPNMLLKEDEI 81
              CP   R +PI  GIPNMLL+EDEI
Sbjct:    98 TCPNCQRVYPIDKGIPNMLLREDEI 122

GO:0044351 "macropinocytosis" evidence=RCA

GENEDB_PFALCIPARUM|PF14_0072 PF14_0072 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 27/75 (36%), Positives = 36/75 (48%)

Query:     1 MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLXXXXXXGDLECPE 60
             ++ K+D+   Y      G   I++       + +D EFL  VHHAL       G L CP+
Sbjct:    49 VLSKVDYDVLYNTAKQFG---INLLASYNSDHLEDEEFLNSVHHALFKVHIMEGSLVCPK 105

Query:    61 SGRKFPISSGIPNML 75
                 FPI  GIPNML
Sbjct:   106 CNISFPIKDGIPNML 120

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IM19 PF14_0072 "Nucleolar preribosomal GTPase, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 27/75 (36%), Positives = 36/75 (48%)

Query:     1 MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLXXXXXXGDLECPE 60
             ++ K+D+   Y      G   I++       + +D EFL  VHHAL       G L CP+
Sbjct:    49 VLSKVDYDVLYNTAKQFG---INLLASYNSDHLEDEEFLNSVHHALFKVHIMEGSLVCPK 105

Query:    61 SGRKFPISSGIPNML 75
                 FPI  GIPNML
Sbjct:   106 CNISFPIKDGIPNML 120

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q09723	TR112_SCHPO	No assigned EC number	0.4285	0.9506	0.6111	yes	N/A
Q2KIA2	TR112_BOVIN	No assigned EC number	0.575	0.9629	0.624	yes	N/A
Q9UI30	TR112_HUMAN	No assigned EC number	0.5875	0.9629	0.624	yes	N/A
Q9VP65	TR112_DROME	No assigned EC number	0.5180	0.9629	0.6290	yes	N/A
Q9C9R3	T112B_ARATH	No assigned EC number	0.4691	1.0	0.6532	yes	N/A
Q9DCG9	TR112_MOUSE	No assigned EC number	0.5625	0.9629	0.624	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
KOG1088|consensus	124		100.0
PF03966	68	Trm112p: Trm112p-like protein; InterPro: IPR005651	99.62
COG2835	60	Uncharacterized conserved protein [Function unknow	99.31
PRK11827	60	hypothetical protein; Provisional	99.27
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	91.97
PF14569	80	zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.	90.01
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	89.58
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	85.85
COG4391	62	Uncharacterized protein conserved in bacteria [Fun	85.45
PF08792	33	A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: I	85.16
PF05191	36	ADK_lid: Adenylate kinase, active site lid; InterP	85.08
COG1645	131	Uncharacterized Zn-finger containing protein [Gene	83.67
PRK00420	112	hypothetical protein; Validated	83.3
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	82.54
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	80.97
PF08274	30	PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01	80.3

>KOG1088|consensus

Probab=100.00  E-value=3.5e-34  Score=192.94  Aligned_cols=79  Identities=56%  Similarity=1.063  Sum_probs=75.6

Q ss_pred             CCccccHHHHHHHHHHhCCCCCCCCCCccCcccc-cHHHHHHhhhhceeeeeccceeEeCCCCccccccCCccccCCCCc
Q psy15340          1 MIPKLDWSAFYKATLMLGDAEISIPEKLIDSYEK-DSEFLKKVHHALLEVEVVEGDLECPESGRKFPISSGIPNMLLKED   79 (81)
Q Consensus         1 ml~kldw~al~~aa~~lg~~~~~lP~~~~~~~~~-~e~~l~~lh~~ll~~~v~eg~L~C~~c~~~ypI~dGIP~ml~~e~   79 (81)
                      |++||||+||+.||+++|.  .+||+..|+++.+ |++|||.+||+|+++++.+|+|+||+|||.|||++||||||..++
T Consensus        45 m~~kidW~All~~A~~l~~--~~lP~~kPe~~~e~de~~Lr~lHhlLle~~v~EG~l~CpetG~vfpI~~GIPNMLL~e~  122 (124)
T KOG1088|consen   45 MLPKIDWSALLEAARSLGN--TELPDEKPEKLVEDDEEFLRKLHHLLLEIDVIEGELVCPETGRVFPISDGIPNMLLSED  122 (124)
T ss_pred             hhhhccHHHHHHHHHHhcc--ccCCCCCccccccccHHHHHHHHHHHhhhhhccceEecCCCCcEeecccCCcccccCcc
Confidence            7999999999999999999  6799999988766 999999999999999999999999999999999999999999999


Q ss_pred             CC
Q psy15340         80 EI   81 (81)
Q Consensus        80 ev   81 (81)
                      |+
T Consensus       123 Ev  124 (124)
T KOG1088|consen  123 EV  124 (124)
T ss_pred             cC
Confidence            86

>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function

Probab=99.62  E-value=7.6e-17  Score=98.13  Aligned_cols=53  Identities=51%  Similarity=1.012  Sum_probs=48.0

Q ss_pred             cccHHHHHHHHHHhCCCCCCCCCCccCcccccHHHHHHhhhhceeeeeccceeEeCCCCccccccCC
Q psy15340          4 KLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPESGRKFPISSG   70 (81)
Q Consensus         4 kldw~al~~aa~~lg~~~~~lP~~~~~~~~~~e~~l~~lh~~ll~~~v~eg~L~C~~c~~~ypI~dG   70 (81)
                      .+||++|+++|+ +|.  .++|+..++++           ++++++++++|.|+||+|||+|||+||
T Consensus        16 pL~~~~l~~~~~-~~~--~~lp~~~~~~~-----------~~l~~~~i~eg~L~Cp~c~r~YPI~dG   68 (68)
T PF03966_consen   16 PLDWEALVETAQ-LGL--SELPKELPEDY-----------HVLLEVEIVEGELICPECGREYPIRDG   68 (68)
T ss_dssp             BEHHHHHHHHHH-CCC--CHCHHCHHCHC-----------EHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred             cchHHHHHHHHH-hCc--ccCCCCCccch-----------hhhhcccccCCEEEcCCCCCEEeCCCC
Confidence            469999999999 998  44888877766           899999999999999999999999998

The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.

>COG2835 Uncharacterized conserved protein [Function unknown]

Probab=99.31  E-value=8.6e-13  Score=79.97  Aligned_cols=34  Identities=32%  Similarity=0.605  Sum_probs=30.6

Q ss_pred             eeeeeccceeEeCCCCccccccCCccccCCCCcC
Q psy15340         47 LEVEVVEGDLECPESGRKFPISSGIPNMLLKEDE   80 (81)
Q Consensus        47 l~~~v~eg~L~C~~c~~~ypI~dGIP~ml~~e~e   80 (81)
                      +..+-.+++|+|+.|+++|||+||||+||+++++
T Consensus        18 L~~~~~~~~L~c~~~~~aYpI~dGIPvlL~~eaR   51 (60)
T COG2835          18 LVYDEEKQELICPRCKLAYPIRDGIPVLLPDEAR   51 (60)
T ss_pred             ceEeccCCEEEecccCceeecccCccccCchhhc
Confidence            4566778899999999999999999999999875

>PRK11827 hypothetical protein; Provisional

Probab=99.27  E-value=9.7e-13  Score=79.69  Aligned_cols=46  Identities=24%  Similarity=0.427  Sum_probs=35.8

Q ss_pred             cHHHHHHhhhhceee----eeccceeEeCCCCccccccCCccccCCCCcC
Q psy15340         35 DSEFLKKVHHALLEV----EVVEGDLECPESGRKFPISSGIPNMLLKEDE   80 (81)
Q Consensus        35 ~e~~l~~lh~~ll~~----~v~eg~L~C~~c~~~ypI~dGIP~ml~~e~e   80 (81)
                      |.++|.-+.+.+...    +..+++|+|+.|+++|||+||||+||.++|+
T Consensus         2 d~~LLeILaCP~ckg~L~~~~~~~~Lic~~~~laYPI~dgIPVlL~deAr   51 (60)
T PRK11827          2 DHRLLEIIACPVCNGKLWYNQEKQELICKLDNLAFPLRDGIPVLLETEAR   51 (60)
T ss_pred             ChHHHhheECCCCCCcCeEcCCCCeEECCccCeeccccCCccccCHHHhc
Confidence            345666666655543    3456789999999999999999999999875

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=91.97  E-value=0.079  Score=28.57  Aligned_cols=18  Identities=33%  Similarity=0.759  Sum_probs=15.0

Q ss_pred             eeEeCCCCccccccCC-cc
Q psy15340         55 DLECPESGRKFPISSG-IP   72 (81)
Q Consensus        55 ~L~C~~c~~~ypI~dG-IP   72 (81)
                      .++||+|+..|.|.|. ||
T Consensus         2 ~i~Cp~C~~~y~i~d~~ip   20 (36)
T PF13717_consen    2 IITCPNCQAKYEIDDEKIP   20 (36)
T ss_pred             EEECCCCCCEEeCCHHHCC
Confidence            3689999999999887 44

>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A

Probab=90.01  E-value=0.069  Score=34.07  Aligned_cols=39  Identities=28%  Similarity=0.468  Sum_probs=19.9

Q ss_pred             hhhhceeeeeccceeEeCCCCccccccCCccccCCCCcC
Q psy15340         42 VHHALLEVEVVEGDLECPESGRKFPISSGIPNMLLKEDE   80 (81)
Q Consensus        42 lh~~ll~~~v~eg~L~C~~c~~~ypI~dGIP~ml~~e~e   80 (81)
                      +=+..++++..+|.-.||+|+..|.=..|-|.+--+++|
T Consensus        38 vCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gDeee   76 (80)
T PF14569_consen   38 VCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGDEEE   76 (80)
T ss_dssp             --HHHHHHHHHTS-SB-TTT--B----TT----TTS---
T ss_pred             cchhHHHHHhhcCcccccccCCCcccccCCCCCCCCccc
Confidence            346778899999999999999999999999998877654

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.58  E-value=0.32  Score=26.69  Aligned_cols=18  Identities=28%  Similarity=0.641  Sum_probs=14.2

Q ss_pred             eeeeeccceeEeCCCCcc
Q psy15340         47 LEVEVVEGDLECPESGRK   64 (81)
Q Consensus        47 l~~~v~eg~L~C~~c~~~   64 (81)
                      +..|..+|+++|+.||..
T Consensus        11 ~~~D~~~g~~vC~~CG~V   28 (43)
T PF08271_consen   11 IVFDPERGELVCPNCGLV   28 (43)
T ss_dssp             EEEETTTTEEEETTT-BB
T ss_pred             eEEcCCCCeEECCCCCCE
Confidence            456778999999999865

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=85.85  E-value=0.43  Score=25.66  Aligned_cols=15  Identities=20%  Similarity=0.767  Sum_probs=12.7

Q ss_pred             eEeCCCCccccccCC
Q psy15340         56 LECPESGRKFPISSG   70 (81)
Q Consensus        56 L~C~~c~~~ypI~dG   70 (81)
                      .+||+|+..|.|.+.
T Consensus         3 i~CP~C~~~f~v~~~   17 (37)
T PF13719_consen    3 ITCPNCQTRFRVPDD   17 (37)
T ss_pred             EECCCCCceEEcCHH
Confidence            579999999998774

>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.45  E-value=0.42  Score=29.20  Aligned_cols=22  Identities=23%  Similarity=0.658  Sum_probs=17.4

Q ss_pred             hceeeeeccceeEeCCCCccccc
Q psy15340         45 ALLEVEVVEGDLECPESGRKFPI   67 (81)
Q Consensus        45 ~ll~~~v~eg~L~C~~c~~~ypI   67 (81)
                      +-|+. -.+|+.+||-|+++|..
T Consensus        39 V~L~m-g~~gev~CPYC~t~y~l   60 (62)
T COG4391          39 VFLDM-GDEGEVVCPYCSTRYRL   60 (62)
T ss_pred             EEEEc-CCCCcEecCccccEEEe
Confidence            34444 67899999999999975

>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors []

Probab=85.16  E-value=0.56  Score=24.98  Aligned_cols=17  Identities=24%  Similarity=0.339  Sum_probs=14.7

Q ss_pred             eccceeEeCCCCccccc
Q psy15340         51 VVEGDLECPESGRKFPI   67 (81)
Q Consensus        51 v~eg~L~C~~c~~~ypI   67 (81)
                      -..+.++|+.||..||+
T Consensus        17 ~~~~~~~C~~Cg~~~~~   33 (33)
T PF08792_consen   17 KEDDYEVCIFCGSSFPY   33 (33)
T ss_pred             ecCCeEEcccCCcEeeC
Confidence            46789999999999985

>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2

Probab=85.08  E-value=0.56  Score=25.38  Aligned_cols=15  Identities=33%  Similarity=0.662  Sum_probs=12.3

Q ss_pred             eeEeCCCCccccccC
Q psy15340         55 DLECPESGRKFPISS   69 (81)
Q Consensus        55 ~L~C~~c~~~ypI~d   69 (81)
                      ..+|+.||+.|.+.-
T Consensus         1 Rr~C~~Cg~~Yh~~~   15 (36)
T PF05191_consen    1 RRICPKCGRIYHIEF   15 (36)
T ss_dssp             EEEETTTTEEEETTT
T ss_pred             CcCcCCCCCcccccc
Confidence            368999999998753

7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....

>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]

Probab=83.67  E-value=0.66  Score=31.98  Aligned_cols=20  Identities=25%  Similarity=0.619  Sum_probs=15.1

Q ss_pred             hceeeeeccceeEeCCCCccccc
Q psy15340         45 ALLEVEVVEGDLECPESGRKFPI   67 (81)
Q Consensus        45 ~ll~~~v~eg~L~C~~c~~~ypI   67 (81)
                      .||+   .+|+.+||.|++.+-+
T Consensus        37 PLF~---KdG~v~CPvC~~~~~~   56 (131)
T COG1645          37 PLFR---KDGEVFCPVCGYREVV   56 (131)
T ss_pred             ccee---eCCeEECCCCCceEEE
Confidence            3555   8999999999965443

>PRK00420 hypothetical protein; Validated

Probab=83.30  E-value=0.69  Score=30.98  Aligned_cols=19  Identities=26%  Similarity=0.751  Sum_probs=16.7

Q ss_pred             ccceeEeCCCCccccccCC
Q psy15340         52 VEGDLECPESGRKFPISSG   70 (81)
Q Consensus        52 ~eg~L~C~~c~~~ypI~dG   70 (81)
                      .+|..+||.||..+-+.+|
T Consensus        37 k~g~~~Cp~Cg~~~~v~~~   55 (112)
T PRK00420         37 KDGEVVCPVHGKVYIVKSD   55 (112)
T ss_pred             CCCceECCCCCCeeeeccH
Confidence            6899999999999988765

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=82.54  E-value=0.67  Score=24.46  Aligned_cols=15  Identities=20%  Similarity=0.722  Sum_probs=12.5

Q ss_pred             eEeCCCCccccccCC
Q psy15340         56 LECPESGRKFPISSG   70 (81)
Q Consensus        56 L~C~~c~~~ypI~dG   70 (81)
                      +.||+|+..|.|.+.
T Consensus         3 ~~CP~C~~~~~v~~~   17 (38)
T TIGR02098         3 IQCPNCKTSFRVVDS   17 (38)
T ss_pred             EECCCCCCEEEeCHH
Confidence            689999999988753

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.97  E-value=0.82  Score=21.24  Aligned_cols=12  Identities=33%  Similarity=0.911  Sum_probs=10.3

Q ss_pred             EeCCCCcccccc
Q psy15340         57 ECPESGRKFPIS   68 (81)
Q Consensus        57 ~C~~c~~~ypI~   68 (81)
                      .|+.|++.|+-+
T Consensus         2 ~C~~C~~~f~~~   13 (23)
T PF00096_consen    2 KCPICGKSFSSK   13 (23)
T ss_dssp             EETTTTEEESSH
T ss_pred             CCCCCCCccCCH
Confidence            699999999754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues

Probab=80.30  E-value=1.1  Score=23.49  Aligned_cols=16  Identities=31%  Similarity=0.534  Sum_probs=11.8

Q ss_pred             eccceeEeCCCCcccc
Q psy15340         51 VVEGDLECPESGRKFP   66 (81)
Q Consensus        51 v~eg~L~C~~c~~~yp   66 (81)
                      ..+..++||.|++.++
T Consensus        15 ~D~~~~vCp~C~~ew~   30 (30)
T PF08274_consen   15 EDGELLVCPECGHEWN   30 (30)
T ss_dssp             E-SSSEEETTTTEEE-
T ss_pred             ccCCEEeCCcccccCC
Confidence            4567899999998763

The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	81
2j6a_A	141	Crystal Structure Of S. Cerevisiae Ynr046w, A Zinc		9e-04

>pdb|2J6A|A Chain A, Crystal Structure Of S. Cerevisiae Ynr046w, A Zinc Finger Protein From The Erf1 Methyltransferase Complex Length = 141

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 1   MIPKLDWSAFYKATLMLGDAEI-----SIPEKLIDSYEKDSEFLKKVHHALLXXXXXXGD 55
           ++ ++DW A       LG+  +     S P  + +  + D   L  +H  LL      G+
Sbjct: 50  IVDRVDWPAVLTVAAELGNNALPPTKPSFPSSIQELTDDDMAILNDLHTLLLQTSIAEGE 109
Query: 56  LECPESGRKFPISSGIPN 73
           ++C   G  + I +GIPN
Sbjct: 110 MKCRNCGHIYYIKNGIPN 127
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	81
2j6a_A	141	Protein TRM112; translation termination, methyltra	7e-29
2js4_A	70	UPF0434 protein BB2007; NESG, northeast structural	3e-04
2jny_A	67	Uncharacterized BCR; structure, CGR1, NESG, struct	4e-04
2kpi_A	56	Uncharacterized protein SCO3027; zinc finger, PSI-	5e-04
2jr6_A	68	UPF0434 protein NMA0874; solution, structural geno	5e-04
2hf1_A	68	Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A	8e-04

>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae} Length = 141

 Score = 99.4 bits (247), Expect = 7e-29
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 1   MIPKLDWSAFYKATLMLGDAEI-----SIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGD 55
           ++ ++DW A       LG+  +     S P  + +  + D   L  +H  LL+  + EG+
Sbjct: 50  IVDRVDWPAVLTVAAELGNNALPPTKPSFPSSIQELTDDDMAILNDLHTLLLQTSIAEGE 109

Query: 56  LECPESGRKFPISSGIPNMLLKEDEI 81
           ++C   G  + I +GIPN+LL    +
Sbjct: 110 MKCRNCGHIYYIKNGIPNLLLPPHLV 135

>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50} Length = 70

 Score = 34.5 bits (80), Expect = 3e-04
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 44 HALLEVEVVEGDLECPESGRKFPISSGIPNMLLKE 78
             LE +  + +L C      FP+  G+P ML  E
Sbjct: 15 KGRLEFQRAQAELVCNADRLAFPVRDGVPIMLEAE 49

>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1 Length = 67

 Score = 34.1 bits (79), Expect = 4e-04
 Identities = 9/35 (25%), Positives = 12/35 (34%)

Query: 44 HALLEVEVVEGDLECPESGRKFPISSGIPNMLLKE 78
             L     E  L        + I  GIP +L+ E
Sbjct: 17 KGPLRYLESEQLLVNERLNLAYRIDDGIPVLLIDE 51

>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor} Length = 56

 Score = 33.6 bits (78), Expect = 5e-04
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 44 HALLEVEVVEGDLECPESGRKFPISSGIPNMLLKE 78
          HA LE    E      + G  +P+  GIP +L+ E
Sbjct: 17 HAPLEERDAELICTGQDCGLAYPVRDGIPVLLVDE 51

>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis} Length = 68

 Score = 34.1 bits (79), Expect = 5e-04
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 44 HALLEVEVVEGDLECPESGRKFPISSGIPNMLLKE 78
             LE    + +L   ++   +PI  GIP ML  E
Sbjct: 15 KGRLEYHQDKQELWSRQAKLAYPIKDGIPYMLENE 49

>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1 Length = 68

 Score = 33.4 bits (77), Expect = 8e-04
 Identities = 12/37 (32%), Positives = 16/37 (43%)

Query: 42 VHHALLEVEVVEGDLECPESGRKFPISSGIPNMLLKE 78
          +    L  +  + +L C      FPI  GIP ML  E
Sbjct: 13 LCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESE 49

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	81
2j6a_A	141	Protein TRM112; translation termination, methyltra	99.98
3q87_A	125	Putative uncharacterized protein ECU08_1170; SAM-m	99.97
2jny_A	67	Uncharacterized BCR; structure, CGR1, NESG, struct	99.45
2jr6_A	68	UPF0434 protein NMA0874; solution, structural geno	99.43
2hf1_A	68	Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A	99.42
2js4_A	70	UPF0434 protein BB2007; NESG, northeast structural	99.42
2pk7_A	69	Uncharacterized protein; NESG, PLR1, putative tetr	99.4
2k5r_A	97	Uncharacterized protein XF2673; solution structure	99.31
2kpi_A	56	Uncharacterized protein SCO3027; zinc finger, PSI-	99.26
1pft_A	50	TFIIB, PFTFIIBN; N-terminal domain, transcription	95.67
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	91.38
1dl6_A	58	Transcription factor II B (TFIIB); zinc ribbon, ge	88.46
2jrr_A	67	Uncharacterized protein; solution structure, SIR90	84.19
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	81.69
3a43_A	139	HYPD, hydrogenase nickel incorporation protein HYP	80.53

>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.5e-33  Score=193.42  Aligned_cols=79  Identities=28%  Similarity=0.607  Sum_probs=74.2

Q ss_pred             CCccccHHHHHHHHHHhCCCCCCCCCCccCcc-----cccHH--HHHHhhhhceeeeeccceeEeCCCCccccccCCccc
Q psy15340          1 MIPKLDWSAFYKATLMLGDAEISIPEKLIDSY-----EKDSE--FLKKVHHALLEVEVVEGDLECPESGRKFPISSGIPN   73 (81)
Q Consensus         1 ml~kldw~al~~aa~~lg~~~~~lP~~~~~~~-----~~~e~--~l~~lh~~ll~~~v~eg~L~C~~c~~~ypI~dGIP~   73 (81)
                      ||||+||+||++||++||.  .+||+++|+++     ++||+  |||++||+++++++.+|+|+|+.||++|||+|||||
T Consensus        50 mlpkldW~aL~~aA~~lg~--~~LP~~~pe~~~~~~~~~dee~~~Lk~lHh~lle~~v~eg~L~C~~cg~~YPI~dGIP~  127 (141)
T 2j6a_A           50 IVDRVDWPAVLTVAAELGN--NALPPTKPSFPSSIQELTDDDMAILNDLHTLLLQTSIAEGEMKCRNCGHIYYIKNGIPN  127 (141)
T ss_dssp             HHHHSCHHHHHHHHHHTTC--CCSCSSCCCCCSSGGGCCHHHHHHHHHHHHHHTTEEEEEEEEECTTTCCEEEEETTEES
T ss_pred             HHhhcCHHHHHHHHHHhCC--ccCCCcCCcccccccccCchHHHHHHHHHHHHhheeccCCEEECCCCCCcccccCCccC
Confidence            6899999999999999999  66999999875     55776  999999999999999999999999999999999999


Q ss_pred             cCCCCcCC
Q psy15340         74 MLLKEDEI   81 (81)
Q Consensus        74 ml~~e~ev   81 (81)
                      ||+++++|
T Consensus       128 mL~~ear~  135 (141)
T 2j6a_A          128 LLLPPHLV  135 (141)
T ss_dssp             SCCCSSCC
T ss_pred             cCCcHHHh
Confidence            99999986

>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.97  E-value=1.2e-33  Score=190.69  Aligned_cols=75  Identities=21%  Similarity=0.328  Sum_probs=72.1

Q ss_pred             CCc---cccHHHHHHHHHHhCCCCCCCCCCccCcccccHHHHHHhhhhceeeeeccceeEeCCCCccccccCCccccCCC
Q psy15340          1 MIP---KLDWSAFYKATLMLGDAEISIPEKLIDSYEKDSEFLKKVHHALLEVEVVEGDLECPESGRKFPISSGIPNMLLK   77 (81)
Q Consensus         1 ml~---kldw~al~~aa~~lg~~~~~lP~~~~~~~~~~e~~l~~lh~~ll~~~v~eg~L~C~~c~~~ypI~dGIP~ml~~   77 (81)
                      |||   |+||+||++||++||.  .+||+++|+++++|++|||++||+|++++|++|+|+||+|||.|||++|||||+..
T Consensus        44 mlp~~~kldW~aL~~aA~~lg~--~~LP~~~p~~~~~deefLr~lHh~Lle~~V~EG~L~Cp~cgr~ypI~~GIPNm~~~  121 (125)
T 3q87_A           44 MFTENGGERLKSLVNSLRDFHG--RELSEQDISSFVENPGDDEKIKEFLFGIDVVEGSLRCDMCGLIYPIKGSIVETVDT  121 (125)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCS--SCCCHHHHHHHHHCTTCCHHHHHHHHSEEEEEEEEEETTTCCEEEEETTEEECSSC
T ss_pred             HcCCccccCHHHHHHHHHHhCC--ccCCCCCCCcccCCHHHHHHHHHHHHheEEEEEEEECCCCCCEeeccCCcccHHHh
Confidence            678   9999999999999998  77999999999999999999999999999999999999999999999999999964

>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1

Probab=99.45  E-value=1.9e-14  Score=87.71  Aligned_cols=34  Identities=26%  Similarity=0.302  Sum_probs=30.6

Q ss_pred             eeeeeccceeEeCCCCccccccCCccccCCCCcC
Q psy15340         47 LEVEVVEGDLECPESGRKFPISSGIPNMLLKEDE   80 (81)
Q Consensus        47 l~~~v~eg~L~C~~c~~~ypI~dGIP~ml~~e~e   80 (81)
                      +.++..+|+|+|+.||++|||+||||+||+++++
T Consensus        20 L~~~~~~g~LvC~~c~~~YPI~dGIPvmL~~Ear   53 (67)
T 2jny_A           20 LRYLESEQLLVNERLNLAYRIDDGIPVLLIDEAT   53 (67)
T ss_dssp             CEEETTTTEEEETTTTEEEEEETTEECCCSSCCE
T ss_pred             CeEeCCCCEEEcCCCCccccCCCCEeeeChhHhc
Confidence            4556678999999999999999999999999875

>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}

Probab=99.43  E-value=3.2e-14  Score=86.83  Aligned_cols=34  Identities=32%  Similarity=0.467  Sum_probs=30.6

Q ss_pred             eeeeeccceeEeCCCCccccccCCccccCCCCcC
Q psy15340         47 LEVEVVEGDLECPESGRKFPISSGIPNMLLKEDE   80 (81)
Q Consensus        47 l~~~v~eg~L~C~~c~~~ypI~dGIP~ml~~e~e   80 (81)
                      +.++..+|+|+|+.||++|||+||||+||+++++
T Consensus        18 L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ear   51 (68)
T 2jr6_A           18 LEYHQDKQELWSRQAKLAYPIKDGIPYMLENEAR   51 (68)
T ss_dssp             CEEETTTTEEEETTTTEEEEEETTEECCCTTTCE
T ss_pred             CeEeCCCCEEEcCCCCcEecCCCCeeeeChhhcc
Confidence            4556678999999999999999999999999875

>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1

Probab=99.42  E-value=3e-14  Score=86.95  Aligned_cols=34  Identities=35%  Similarity=0.579  Sum_probs=30.5

Q ss_pred             eeeeeccceeEeCCCCccccccCCccccCCCCcC
Q psy15340         47 LEVEVVEGDLECPESGRKFPISSGIPNMLLKEDE   80 (81)
Q Consensus        47 l~~~v~eg~L~C~~c~~~ypI~dGIP~ml~~e~e   80 (81)
                      +.++..+|+|+|+.||++|||+||||+||+++++
T Consensus        18 L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ear   51 (68)
T 2hf1_A           18 LVFDKSKDELICKGDRLAFPIKDGIPMMLESEAR   51 (68)
T ss_dssp             CEEETTTTEEEETTTTEEEEEETTEECCCGGGCE
T ss_pred             CeEeCCCCEEEcCCCCcEecCCCCeeeeChhhcc
Confidence            4566678999999999999999999999999875

>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}

Probab=99.42  E-value=3.6e-14  Score=87.02  Aligned_cols=34  Identities=32%  Similarity=0.621  Sum_probs=30.5

Q ss_pred             eeeeeccceeEeCCCCccccccCCccccCCCCcC
Q psy15340         47 LEVEVVEGDLECPESGRKFPISSGIPNMLLKEDE   80 (81)
Q Consensus        47 l~~~v~eg~L~C~~c~~~ypI~dGIP~ml~~e~e   80 (81)
                      +.++..+|+|+|+.||++|||+||||+||+++++
T Consensus        18 L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ear   51 (70)
T 2js4_A           18 LEFQRAQAELVCNADRLAFPVRDGVPIMLEAEAR   51 (70)
T ss_dssp             EEEETTTTEEEETTTTEEEEEETTEECCCGGGSE
T ss_pred             CEEeCCCCEEEcCCCCceecCCCCeeeeChhhcc
Confidence            4566678999999999999999999999999875

>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1

Probab=99.40  E-value=5.3e-14  Score=86.05  Aligned_cols=34  Identities=32%  Similarity=0.536  Sum_probs=30.1

Q ss_pred             eeeeeccceeEeCCCCccccccCCccccCCCCcC
Q psy15340         47 LEVEVVEGDLECPESGRKFPISSGIPNMLLKEDE   80 (81)
Q Consensus        47 l~~~v~eg~L~C~~c~~~ypI~dGIP~ml~~e~e   80 (81)
                      +.++..+|+|+|+.||++|||+||||+||+++++
T Consensus        18 L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~ear   51 (69)
T 2pk7_A           18 LKLSADKTELISKGAGLAYPIRDGIPVMLESEAR   51 (69)
T ss_dssp             CEECTTSSEEEETTTTEEEEEETTEECCCGGGCE
T ss_pred             CeEeCCCCEEEcCCCCcEecCcCCeeeeChhhcc
Confidence            3455678999999999999999999999999875

>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}

Probab=99.31  E-value=2.4e-13  Score=88.04  Aligned_cols=32  Identities=22%  Similarity=0.289  Sum_probs=28.6

Q ss_pred             eeeccceeEeCCCCccccccCCccccCCCCcC
Q psy15340         49 VEVVEGDLECPESGRKFPISSGIPNMLLKEDE   80 (81)
Q Consensus        49 ~~v~eg~L~C~~c~~~ypI~dGIP~ml~~e~e   80 (81)
                      .++.+|+|+|+.||++|||+||||+||+++++
T Consensus        47 ~e~~~~~LvC~~c~~~YPI~dGIPvmL~~ear   78 (97)
T 2k5r_A           47 NQSLHEALITRDRKQVFRIEDSIPVLLPEEAI   78 (97)
T ss_dssp             CCCCSEEEECTTSCEEEEEETTEEECCGGGEE
T ss_pred             ccccCCeEEcCCCCCCccccCCCcccChHHhc
Confidence            34568999999999999999999999999864

>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}

Probab=99.26  E-value=1.9e-12  Score=76.22  Aligned_cols=28  Identities=32%  Similarity=0.839  Sum_probs=26.5

Q ss_pred             cceeEeC--CCCccccccCCccccCCCCcC
Q psy15340         53 EGDLECP--ESGRKFPISSGIPNMLLKEDE   80 (81)
Q Consensus        53 eg~L~C~--~c~~~ypI~dGIP~ml~~e~e   80 (81)
                      +|+|+|+  .||++|||+||||+||+++++
T Consensus        24 ~~~L~C~~~~c~~~YPI~dGIPvlL~~ear   53 (56)
T 2kpi_A           24 DAELICTGQDCGLAYPVRDGIPVLLVDEAR   53 (56)
T ss_dssp             TTEEEECSSSCCCEEEEETTEECCCTTTCB
T ss_pred             CCEEEcCCcCCCcEEeeECCEeeeCHHHcc
Confidence            4999999  999999999999999999986

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1

Probab=95.67  E-value=0.0064  Score=33.58  Aligned_cols=21  Identities=19%  Similarity=0.379  Sum_probs=18.1

Q ss_pred             eeeeeccceeEeCCCCccccc
Q psy15340         47 LEVEVVEGDLECPESGRKFPI   67 (81)
Q Consensus        47 l~~~v~eg~L~C~~c~~~ypI   67 (81)
                      +.++...|+|+|+.||.+|+-
T Consensus        16 l~~d~~~gelvC~~CG~v~~e   36 (50)
T 1pft_A           16 LIYDPERGEIVCAKCGYVIEE   36 (50)
T ss_dssp             EEEETTTTEEEESSSCCBCCC
T ss_pred             eEEcCCCCeEECcccCCcccc
Confidence            566778899999999999984

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=91.38  E-value=0.041  Score=35.04  Aligned_cols=38  Identities=26%  Similarity=0.420  Sum_probs=31.5

Q ss_pred             hhhhceeeeeccceeEeCCCCccccccCCccccCCCCc
Q psy15340         42 VHHALLEVEVVEGDLECPESGRKFPISSGIPNMLLKED   79 (81)
Q Consensus        42 lh~~ll~~~v~eg~L~C~~c~~~ypI~dGIP~ml~~e~   79 (81)
                      +=+..++++..+|...||+|+..|.=..|-|.+--+++
T Consensus        45 vCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GDe~   82 (93)
T 1weo_A           45 ACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDED   82 (93)
T ss_dssp             CCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTSCC
T ss_pred             hhHHHHHHHHhccCccccccCCccccccCCCCcccccc
Confidence            34677888999999999999999998889987766543

>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A

Probab=88.46  E-value=0.2  Score=28.67  Aligned_cols=20  Identities=35%  Similarity=0.587  Sum_probs=16.3

Q ss_pred             eeeeeccceeEeCCCCcccc
Q psy15340         47 LEVEVVEGDLECPESGRKFP   66 (81)
Q Consensus        47 l~~~v~eg~L~C~~c~~~yp   66 (81)
                      +..+...|+++|..||.++.
T Consensus        22 lv~D~~~ge~vC~~CGlVl~   41 (58)
T 1dl6_A           22 LVEDYRAGDMICPECGLVVG   41 (58)
T ss_dssp             CEECSSSCCEECTTTCCEEC
T ss_pred             eeEeCCCCeEEeCCCCCEEe
Confidence            35567889999999999873

>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}

Probab=84.19  E-value=0.4  Score=28.67  Aligned_cols=33  Identities=21%  Similarity=0.394  Sum_probs=23.4

Q ss_pred             hhhceeeee--ccceeEeCCCCccccccCCccccC
Q psy15340         43 HHALLEVEV--VEGDLECPESGRKFPISSGIPNML   75 (81)
Q Consensus        43 h~~ll~~~v--~eg~L~C~~c~~~ypI~dGIP~ml   75 (81)
                      -|...=+++  .+|.-.||-||+.|..+++-..-|
T Consensus        26 gHPrVyl~ld~~~g~~~CpYCg~~f~l~~~~~~~~   60 (67)
T 2jrr_A           26 GHPRVWLQIPEDTGWVECPYCDCKYVLKGSKADAL   60 (67)
T ss_dssp             EEEEEEEECCTTTSEEEETTTTEEEEETTSGGGCC
T ss_pred             CCCEEEEEccCCCCeEECCCCCCEEEECCCcchhh
Confidence            333333444  579999999999999888765443

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=81.69  E-value=0.69  Score=24.79  Aligned_cols=15  Identities=20%  Similarity=0.587  Sum_probs=12.8

Q ss_pred             ceeEeCCCCcccccc
Q psy15340         54 GDLECPESGRKFPIS   68 (81)
Q Consensus        54 g~L~C~~c~~~ypI~   68 (81)
                      ....|++||..+|+.
T Consensus         8 ~~~~C~~C~~~i~~~   22 (39)
T 2i5o_A            8 DQVPCEKCGSLVPVW   22 (39)
T ss_dssp             CEEECTTTCCEEEGG
T ss_pred             CCcccccccCcCCcc
Confidence            457899999999985

>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*

Probab=80.53  E-value=1  Score=29.51  Aligned_cols=26  Identities=15%  Similarity=0.270  Sum_probs=20.4

Q ss_pred             hhceeeeeccceeEeCCCCccccccC
Q psy15340         44 HALLEVEVVEGDLECPESGRKFPISS   69 (81)
Q Consensus        44 ~~ll~~~v~eg~L~C~~c~~~ypI~d   69 (81)
                      .+-|+++...+...|..||..|.+.+
T Consensus        59 ~A~L~i~~~p~~~~C~~CG~~~~~~~   84 (139)
T 3a43_A           59 GAEIEFVEEEAVFKCRNCNYEWKLKE   84 (139)
T ss_dssp             TCEEEEEEECCEEEETTTCCEEEGGG
T ss_pred             CCEEEEEecCCcEECCCCCCEEeccc
Confidence            34455666777999999999999866

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	81
d2jnya1	59	b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405	4e-05
d2hf1a1	59	b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Ch	4e-04
d2pk7a1	59	b.171.1.1 (A:3-61) Uncharacterized protein PFL1779	0.002

>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592 {Corynebacterium glutamicum [TaxId: 1718]} Length = 59

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein Cgl1405/cg1592
species: Corynebacterium glutamicum [TaxId: 1718]

 Score = 35.4 bits (82), Expect = 4e-05
 Identities = 9/37 (24%), Positives = 12/37 (32%)

Query: 42 VHHALLEVEVVEGDLECPESGRKFPISSGIPNMLLKE 78
               L     E  L        + I  GIP +L+ E
Sbjct: 15 KDKGPLRYLESEQLLVNERLNLAYRIDDGIPVLLIDE 51

>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Chromobacterium violaceum [TaxId: 536]} Length = 59

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Hypothetical protein CV3345
species: Chromobacterium violaceum [TaxId: 536]

 Score = 32.7 bits (75), Expect = 4e-04
 Identities = 12/37 (32%), Positives = 16/37 (43%)

Query: 42 VHHALLEVEVVEGDLECPESGRKFPISSGIPNMLLKE 78
          +    L  +  + +L C      FPI  GIP ML  E
Sbjct: 12 LCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESE 48

>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779 {Pseudomonas fluorescens [TaxId: 294]} Length = 59

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein PFL1779
species: Pseudomonas fluorescens [TaxId: 294]

 Score = 31.5 bits (72), Expect = 0.002
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 44 HALLEVEVVEGDLECPESGRKFPISSGIPNMLLKE 78
             L++   + +L    +G  +PI  GIP ML  E
Sbjct: 13 KGPLKLSADKTELISKGAGLAYPIRDGIPVMLESE 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	81
d2jnya1	59	Uncharacterized protein Cgl1405/cg1592 {Corynebact	99.3
d2pk7a1	59	Uncharacterized protein PFL1779 {Pseudomonas fluor	99.28
d2hf1a1	59	Hypothetical protein CV3345 {Chromobacterium viola	99.25
d1s3ga2	35	Microbial and mitochondrial ADK, insert "zinc fing	93.39
d1zina2	35	Microbial and mitochondrial ADK, insert "zinc fing	92.96
d1akya2	38	Microbial and mitochondrial ADK, insert "zinc fing	92.76
d1e4va2	35	Microbial and mitochondrial ADK, insert "zinc fing	92.25
d2akla2	38	Hypothetical protein PA0128, N-terminal domain {Ps	91.44
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	91.37
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	87.89
d1pfta_	50	Transcription initiation factor TFIIB, N-terminal	84.9
d1dl6a_	58	Transcription initiation factor TFIIB, N-terminal	81.75
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	80.14

>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592 {Corynebacterium glutamicum [TaxId: 1718]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein Cgl1405/cg1592
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=99.30  E-value=3.2e-13  Score=79.07  Aligned_cols=34  Identities=26%  Similarity=0.302  Sum_probs=30.2

Q ss_pred             eeeeeccceeEeCCCCccccccCCccccCCCCcC
Q psy15340         47 LEVEVVEGDLECPESGRKFPISSGIPNMLLKEDE   80 (81)
Q Consensus        47 l~~~v~eg~L~C~~c~~~ypI~dGIP~ml~~e~e   80 (81)
                      ++.+..+++|+|+.|+++|||+||||+||+++|+
T Consensus        20 L~~~~~~~~Lvc~~~~~~YPI~dgIPvLL~deA~   53 (59)
T d2jnya1          20 LRYLESEQLLVNERLNLAYRIDDGIPVLLIDEAT   53 (59)
T ss_dssp             CEEETTTTEEEETTTTEEEEEETTEECCCSSCCE
T ss_pred             eEEeCCCCEEEcCccCccccccCCccccCHHHhc
Confidence            4455678999999999999999999999999975

>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779 {Pseudomonas fluorescens [TaxId: 294]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein PFL1779
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.28  E-value=3.6e-13  Score=79.00  Aligned_cols=34  Identities=32%  Similarity=0.536  Sum_probs=30.0

Q ss_pred             eeeeeccceeEeCCCCccccccCCccccCCCCcC
Q psy15340         47 LEVEVVEGDLECPESGRKFPISSGIPNMLLKEDE   80 (81)
Q Consensus        47 l~~~v~eg~L~C~~c~~~ypI~dGIP~ml~~e~e   80 (81)
                      +.++..+++|+|+.|+++|||+||||+||+++|+
T Consensus        16 L~~~~~~~~Lvc~~~~laYPI~dGIPvlL~~eAr   49 (59)
T d2pk7a1          16 LKLSADKTELISKGAGLAYPIRDGIPVMLESEAR   49 (59)
T ss_dssp             CEECTTSSEEEETTTTEEEEEETTEECCCGGGCE
T ss_pred             ceEeCCCCEEecCCcCccccccCCccccCHHHhc
Confidence            4455578899999999999999999999999875

>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Chromobacterium violaceum [TaxId: 536]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Hypothetical protein CV3345
species: Chromobacterium violaceum [TaxId: 536]

Probab=99.25  E-value=6.5e-13  Score=77.80  Aligned_cols=34  Identities=35%  Similarity=0.579  Sum_probs=30.2

Q ss_pred             eeeeeccceeEeCCCCccccccCCccccCCCCcC
Q psy15340         47 LEVEVVEGDLECPESGRKFPISSGIPNMLLKEDE   80 (81)
Q Consensus        47 l~~~v~eg~L~C~~c~~~ypI~dGIP~ml~~e~e   80 (81)
                      +.++..+++|+|+.|+++|||+||||+||+++|+
T Consensus        17 L~~~~~~~~Lvc~~~~l~YPI~dGIPvlL~~eAr   50 (59)
T d2hf1a1          17 LVFDKSKDELICKGDRLAFPIKDGIPMMLESEAR   50 (59)
T ss_dssp             CEEETTTTEEEETTTTEEEEEETTEECCCGGGCE
T ss_pred             eeEeCCCCEEecCCcCccccccCCccccCHHHhc
Confidence            4556678899999999999999999999999875

>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus globisporus [TaxId: 1459]

Probab=93.39  E-value=0.016  Score=29.39  Aligned_cols=16  Identities=19%  Similarity=0.395  Sum_probs=13.8

Q ss_pred             ceeEeCCCCccccccC
Q psy15340         54 GDLECPESGRKFPISS   69 (81)
Q Consensus        54 g~L~C~~c~~~ypI~d   69 (81)
                      |.++|+.||+.|.|.-
T Consensus         1 GR~~C~~CG~~Yh~~~   16 (35)
T d1s3ga2           1 GRRICKVCGTSYHLLF   16 (35)
T ss_dssp             SEEEETTTCCEEETTT
T ss_pred             CccCCcCcCchhcccc
Confidence            6899999999997754

>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.96  E-value=0.021  Score=29.01  Aligned_cols=17  Identities=18%  Similarity=0.391  Sum_probs=14.5

Q ss_pred             ceeEeCCCCccccccCC
Q psy15340         54 GDLECPESGRKFPISSG   70 (81)
Q Consensus        54 g~L~C~~c~~~ypI~dG   70 (81)
                      |..+|+.||+.|.|.--
T Consensus         1 GRr~C~~CG~~Yh~~~~   17 (35)
T d1zina2           1 GRRICRNCGATYHLIFH   17 (35)
T ss_dssp             TEEEETTTCCEEETTTB
T ss_pred             CccCCcCcCchhccccC
Confidence            67899999999998643

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.76  E-value=0.021  Score=29.45  Aligned_cols=17  Identities=35%  Similarity=0.495  Sum_probs=14.1

Q ss_pred             ceeEeCCCCccccccCC
Q psy15340         54 GDLECPESGRKFPISSG   70 (81)
Q Consensus        54 g~L~C~~c~~~ypI~dG   70 (81)
                      |..+|+.||+.|.|.--
T Consensus         1 GRr~C~~cG~~Yh~~~~   17 (38)
T d1akya2           1 GRLIHPASGRSYHKIFN   17 (38)
T ss_dssp             TEEECTTTCCEEETTTB
T ss_pred             CccCCcCccchhhhhcc
Confidence            67899999999977543

>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Escherichia coli [TaxId: 562]

Probab=92.25  E-value=0.028  Score=28.45  Aligned_cols=19  Identities=26%  Similarity=0.392  Sum_probs=15.4

Q ss_pred             ceeEeCCCCccccccCCcc
Q psy15340         54 GDLECPESGRKFPISSGIP   72 (81)
Q Consensus        54 g~L~C~~c~~~ypI~dGIP   72 (81)
                      |..+|+.||+.|.|.---|
T Consensus         1 GRr~c~~cG~~Yh~~~~PP   19 (35)
T d1e4va2           1 GRRVHAPSGRVYHVKFNPP   19 (35)
T ss_dssp             TEEEETTTTEEEETTTBCC
T ss_pred             CccCCcCcCChhhhccCcc
Confidence            6789999999999864433

>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: PhnA zinc-binding domain
domain: Hypothetical protein PA0128, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.44  E-value=0.032  Score=28.96  Aligned_cols=18  Identities=22%  Similarity=0.418  Sum_probs=14.5

Q ss_pred             ccceeEeCCCCccccccC
Q psy15340         52 VEGDLECPESGRKFPISS   69 (81)
Q Consensus        52 ~eg~L~C~~c~~~ypI~d   69 (81)
                      ..+.|+||+|++.|+-.+
T Consensus        17 dg~l~vCPeC~hEW~~~~   34 (38)
T d2akla2          17 DGALLVCPECAHEWSPNE   34 (38)
T ss_dssp             CSSSEEETTTTEEECTTT
T ss_pred             CCCEEECCcccCcCCccc
Confidence            456899999999997544

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.37  E-value=0.02  Score=34.92  Aligned_cols=38  Identities=29%  Similarity=0.451  Sum_probs=33.2

Q ss_pred             hhhceeeeeccceeEeCCCCccccccCCccccCCCCcC
Q psy15340         43 HHALLEVEVVEGDLECPESGRKFPISSGIPNMLLKEDE   80 (81)
Q Consensus        43 h~~ll~~~v~eg~L~C~~c~~~ypI~dGIP~ml~~e~e   80 (81)
                      -+..++++..+|.-.||+|+..|.=.+|-|.+-.++.|
T Consensus        46 CrpCyEYErkeG~q~CpqCkt~Ykr~kgsprv~gDe~e   83 (93)
T d1weoa_          46 CRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDEDE   83 (93)
T ss_dssp             CHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTSCCC
T ss_pred             chHHHHHHHhccCccCcccCChhhhhcCCCCCCCCccc
Confidence            46677889999999999999999999999998877654

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=87.89  E-value=0.11  Score=26.47  Aligned_cols=18  Identities=33%  Similarity=0.457  Sum_probs=14.4

Q ss_pred             eeEeCCCCccccccCCcc
Q psy15340         55 DLECPESGRKFPISSGIP   72 (81)
Q Consensus        55 ~L~C~~c~~~ypI~dGIP   72 (81)
                      .++||.||+.|.|.---|
T Consensus         2 R~vc~~cG~~Yh~~~~pP   19 (37)
T d2ak3a2           2 RWIHPGSGRVYNIEFNPP   19 (37)
T ss_dssp             EEEETTTTEEEETTTBCC
T ss_pred             ceeeCCcCChhhhccCCc
Confidence            589999999998865433

>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.90  E-value=0.27  Score=26.16  Aligned_cols=18  Identities=22%  Similarity=0.482  Sum_probs=15.2

Q ss_pred             eeeeeccceeEeCCCCcc
Q psy15340         47 LEVEVVEGDLECPESGRK   64 (81)
Q Consensus        47 l~~~v~eg~L~C~~c~~~   64 (81)
                      +..|-..|+++|..||..
T Consensus        16 iv~D~~~Ge~vC~~CG~V   33 (50)
T d1pfta_          16 LIYDPERGEIVCAKCGYV   33 (50)
T ss_dssp             EEEETTTTEEEESSSCCB
T ss_pred             EEEECCCCeEecccCCcE
Confidence            456778899999999975

>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.75  E-value=0.31  Score=26.76  Aligned_cols=18  Identities=39%  Similarity=0.680  Sum_probs=14.9

Q ss_pred             eeeeeccceeEeCCCCcc
Q psy15340         47 LEVEVVEGDLECPESGRK   64 (81)
Q Consensus        47 l~~~v~eg~L~C~~c~~~   64 (81)
                      +..+...|+++|..||..
T Consensus        22 ii~D~~~Ge~vC~~CG~V   39 (58)
T d1dl6a_          22 LVEDYRAGDMICPECGLV   39 (58)
T ss_dssp             CEECSSSCCEECTTTCCE
T ss_pred             EEEECCCCcEecccCCCE
Confidence            455678899999999985

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.14  E-value=0.28  Score=23.48  Aligned_cols=11  Identities=36%  Similarity=0.782  Sum_probs=9.4

Q ss_pred             eEeCCCCcccc
Q psy15340         56 LECPESGRKFP   66 (81)
Q Consensus        56 L~C~~c~~~yp   66 (81)
                      -+|.+||++|-
T Consensus         3 hvc~ecgkaf~   13 (28)
T d1ubdc2           3 HVCAECGKAFV   13 (28)
T ss_dssp             EECTTTCCEES
T ss_pred             chHHHHhHHHH
Confidence            48999999984