Psyllid ID: psy15354

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MEGGGECLGLINLGRNTRFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKFLPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRLVRALATQNSGARRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADSSFQNLSFNSSSSFNQSPSPSSPSTPQFNASPHNRMSAFAEKKAQFIAEARRRAATL
Secondary Structure (PSIPRED)
ccccccccHHHcccccccccHHHHHHHHHHHHccccccEEEccccccccccHHHHcccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHEccccccccHHHHHHHHHHHHccccccEEEcccccccccHHHHHEccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHccccccEEHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
megggeclglinlgrntrfsRSTFLSKLKSFLcrteapivlfpeeettngkkglLKFLPVMKRAQNETDEDLMSRIEACIAcegrlsptlctpsekYELEKRLVRALATqnsgarrydsrMYAEAQRIReifpniplNAIVRELGRSHGNAELTISRLIadssfqnlsfnssssfnqspspsspstpqfnasphnrMSAFAEKKAQFIAEARRRAATL
Flexible Loop (DISEMBL)
MEGGGECLGLinlgrntrfSRSTFLSKLKSFLCRTEAPivlfpeeettngkkgllkflPVMKRAQNETDEDLMSRIEACIACegrlsptlctpsEKYELEKRLVRAlatqnsgarrydSRMYAEAQRIreifpnipLNAIVRELGRSHGNAELTISRLIADSSFQNLSFNSSSSFNQSPSPSSPSTPQFNASPHNRMSAFAEKKAQFIAEARRRAATL
Low Complexity Region (SEG)
MEGGGECLGLINLGRNTRFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKFLPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRLVRALATQNSGARRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADssfqnlsfnssssfnqspspsspstpqfnASPHNRMSAFAEKKAQFIAEARRRAATL
Disordered region (IsUnstruct)
******CLGLINLGRNTRFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKFLPVMK********DLMSRIEACIACEGRLSPTLCTPSEKYELEKRLVRALATQ***ARRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLI***********************************************************
Disordered Region (DISOPRED)
****GECLGLINLGRNTRFSR***LSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKFLPVMKR*******DLMSRIEACIACEGRLSPTLCTPSEKYE***************************QRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS****************************************KKAQFIAEARRR****
Disordered Region (DISEMBL)
MEGGGECLGLINLGRNTRFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKFLPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRLVRALATQNSGARRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADSSFQNLS*****************************SAFAEKKAQFIAE********
Disordered Region (DISPRO)
****GECLGLINLGRNTRFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKFLPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRLVR************DSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS*************************************FAEKKAQFIAEARRRA***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGGGECLGLINLGRNTRFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKFLPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRLVRALATQNSGARRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADSSFQNLSFNSSSSFNQSPSPSSPSTPQFNASPHNRMSAFAEKKAQFIAEARRRAATL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
Q6PBN5	423	Ancient ubiquitous protei	yes	N/A	0.917	0.472	0.239	1e-09
B1H1N7	399	Ancient ubiquitous protei	N/A	N/A	0.917	0.501	0.245	8e-08
A9ULG4	403	Ancient ubiquitous protei	yes	N/A	0.931	0.503	0.243	1e-07
P70295	410	Ancient ubiquitous protei	yes	N/A	0.724	0.385	0.277	1e-07
A1L134	410	Ancient ubiquitous protei	yes	N/A	0.729	0.387	0.296	2e-07
Q9Y679	476	Ancient ubiquitous protei	no	N/A	0.711	0.325	0.295	3e-07

>sp|Q6PBN5|AUP1_DANRE Ancient ubiquitous protein 1 OS=Danio rerio GN=aup1 PE=2 SV=2

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 116/292 (39%), Gaps = 92/292 (31%)

Query: 9   GLINLGRNTRFSRSTFLSKLKSFLCRTEA-PIVLFPEEETTNGKKGLLKF---------- 57
           G + LG+    SR+     L  +    +  P++LFPEE+TTNG+ GLLKF          
Sbjct: 125 GFMELGQGVG-SRTELTETLHRYCSSPDTLPLLLFPEEDTTNGRTGLLKFSSWPFSVSDS 183

Query: 58  -----------------------------------------LPVMKRAQNETDEDLMSRI 76
                                                    LP + +   ET ++  S++
Sbjct: 184 IQPVALLVKRPFIAVSTPESSWLTELLWTFFVPFTVYHVRWLPPLSKEDGETHQEFASKV 243

Query: 77  EACIACEGRLSPTLCTPSEKYELEKRLVRA---LATQNSGAR--------------RYDS 119
           +  +A E  +  T  T ++K E  KR   +    A  N GAR                DS
Sbjct: 244 QGLLATELGVISTQITKADKAEHIKRKRHSAPQTAHSNLGARPRTVAQGFLGTSVGAEDS 303

Query: 120 RMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADSSFQNLSFNSSSSFNQ-- 177
           R+   AQ+++E+ P++P++ I R+L +++   + TI+ L+  +      FNS ++     
Sbjct: 304 RIARLAQQVKEVLPDVPVSVITRDLLQTNC-VDTTITNLLERTD----QFNSEAAMTMPS 358

Query: 178 -------SPSPSS--------PSTPQFNASPHNRMSAFAEKKAQFIAEARRR 214
                  S +PS+        P+   F  SP +R  +  E+K      ARRR
Sbjct: 359 GPGKAAASSTPSAMVSSPNLKPAAKSFGRSPIDRHMSLQERKEALYEYARRR 410

May play a role in the translocation of terminally misfolded proteins from the endoplasmic reticulum lumen to the cytoplasm and their degradation by the proteasome.
Danio rerio (taxid: 7955)

>sp|B1H1N7|AUP1_XENLA Ancient ubiquitous protein 1 OS=Xenopus laevis GN=aup1 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 104/261 (39%), Gaps = 61/261 (23%)

Query: 9   GLINLGRNTRFSRSTFLSKLKSFLCRTE-APIVLFPEEETTNGKKGLLKF---------- 57
           G + LG     SR+  +  LK +L +   AP++LFPEE+TTNG+ GLL F          
Sbjct: 125 GFLELGALG--SRTQLMESLKHYLSQPGGAPLLLFPEEDTTNGRTGLLHFSSWPFSLSDS 182

Query: 58  -----------------------------------------LPVMKRAQNETDEDLMSRI 76
                                                    LP + R   E+DED   R+
Sbjct: 183 VQPLSLTVQRPLIAVAVSGCSWVTELFWLLFIPFTVYQVRWLPSVCRLPRESDEDFACRV 242

Query: 77  EACIACEGRLSPTLCTPSEKYELEKRLVRALATQNSGARRYDSRMYAEAQRIREIFPNIP 136
           +  ++    +  T  T +++ E  KR  R        ++         AQ ++E+ P +P
Sbjct: 243 QQIVSLSLGVVATRHTAADRAEYVKR--RRCELPAPKSQPLSPTHIQMAQHVKEVLPQVP 300

Query: 137 LNAIVRELGRSHGNAELTISRLIAD--SSFQNLSFNSSSSFNQSPSPSSPSTPQ-FNASP 193
           L+AI R+LG + G  + TI+  +    +        + ++   S S  S   PQ F   P
Sbjct: 301 LSAIHRDLGHT-GCVDTTITNFLEGRVTFVAEEEETTGAAEGTSKSRVSRPLPQGFAKKP 359

Query: 194 HNRMSAFAEKKAQFIAEARRR 214
            +R  +  ++K Q + E  RR
Sbjct: 360 EDRHLSLQDRK-QILYECARR 379

May play a role in the translocation of terminally misfolded proteins from the endoplasmic reticulum lumen to the cytoplasm and their degradation by the proteasome.

Xenopus laevis (taxid: 8355)

>sp|A9ULG4|AUP1_XENTR Ancient ubiquitous protein 1 OS=Xenopus tropicalis GN=aup1 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 102/263 (38%), Gaps = 60/263 (22%)

Query: 9   GLINLGRNTRFSRSTFLSKLKSFLCRTEA-PIVLFPEEETTNGKKGLLKF---------- 57
           G + LG     SR+  +  LK +L +    P++LFPEEETT+G+ GLL F          
Sbjct: 125 GFLELGALG--SRTQLMESLKHYLSQPGGGPLLLFPEEETTSGRTGLLHFSSWPFSLSDS 182

Query: 58  -----------------------------------------LPVMKRAQNETDEDLMSRI 76
                                                    LP + R   E+DE+   R+
Sbjct: 183 VQPLTLTVQRPLVAAAVSGCSWVTELFWLLFIPFTVYQVRWLPPVTRHTRESDEEFAFRV 242

Query: 77  EACIACEGRLSPTLCTPSEKYELEKRLVRALATQNSGARRYDSRMYAEAQRIREIFPNIP 136
           +  +A    ++ T  T +++ E  KR    L      +          AQ ++E+ P +P
Sbjct: 243 QQMMAGSLGVAATRHTGADRAEYLKRRRTELPRSAPRSVPLSPTQMQMAQHVKEVLPQVP 302

Query: 137 LNAIVRELGRSHGNAELTISRLI-ADSSF----QNLSFNSSSSFNQSPSPSSPSTPQFNA 191
           L+AI R+LG + G  + TI+  +    +F    + L  N ++        S P    F  
Sbjct: 303 LSAIHRDLGHT-GCIDTTITNFLEGRVTFLPEEETLGGNEATERTPLDRISRPLPRGFAK 361

Query: 192 SPHNRMSAFAEKKAQFIAEARRR 214
           SP  R  +  E+K      ARR+
Sbjct: 362 SPEVRHLSLQERKEALYECARRK 384

May play a role in the translocation of terminally misfolded proteins from the endoplasmic reticulum lumen to the cytoplasm and their degradation by the proteasome.

Xenopus tropicalis (taxid: 8364)

>sp|P70295|AUP1_MOUSE Ancient ubiquitous protein 1 OS=Mus musculus GN=Aup1 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 22/180 (12%)

Query: 55  LKFLPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRL----VRALATQ 110
           +++L  ++R   E  E+   R++  +A E     T  TP++K E  KR     +R  + Q
Sbjct: 223 VRWLHPIRRQLGEESEEFALRVQQLVAKELGQIGTRLTPADKAEHMKRQRHPRLRPQSVQ 282

Query: 111 NSGARRY----DSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADSSFQN 166
           +S         D ++   A R++E+ P++PLN I R+L R+ G  +LTI+ L+ + +   
Sbjct: 283 SSFPSPPSPSSDVQLTTLAHRVKEVLPHVPLNVIQRDLART-GCVDLTITNLL-EGAVAF 340

Query: 167 LSFNSSSSFNQSPSPSSP-------STPQ-----FNASPHNRMSAFAEKKAQFIAEARRR 214
           +  + +      P+PS+P       +TPQ     F  S   R  +  E+K      ARRR
Sbjct: 341 MPEDVTEGSQSPPAPSAPKFPSSGLATPQPTALTFAKSSWARQESLQERKQALYEYARRR 400

May play a role in the translocation of terminally misfolded proteins from the endoplasmic reticulum lumen to the cytoplasm and their degradation by the proteasome.

Mus musculus (taxid: 10090)

>sp|A1L134|AUP1_RAT Ancient ubiquitous protein 1 OS=Rattus norvegicus GN=Aup1 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 20/179 (11%)

Query: 55  LKFLPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRL----VRALATQ 110
           +++L  ++R   E +E+   R++  +A E     T  TP++K E  KR     +R  + Q
Sbjct: 223 VRWLHPIRRQLGEENEEFALRVQQLVAKELGQIGTRLTPADKAEHMKRQRHPRLRPQSVQ 282

Query: 111 NSGARRY----DSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLI--ADSSF 164
           +S         D ++   AQR++E+ P++PLN I R+L R+ G  +LTI+ L+  A +  
Sbjct: 283 SSFPSPPSPSSDVQLTILAQRVKEVLPHVPLNVIQRDLART-GCVDLTITNLLEGAVAFM 341

Query: 165 QNLSFNSSSSFNQSPSPSSPS----TPQ-----FNASPHNRMSAFAEKKAQFIAEARRR 214
                  S S   + +P  PS    TPQ     F  S   R  +  E+K      ARRR
Sbjct: 342 PEDVTEGSQSLPTASAPKFPSSGLVTPQPTALTFAKSSWARQESLQERKQALYEYARRR 400

May play a role in the translocation of terminally misfolded proteins from the endoplasmic reticulum lumen to the cytoplasm and their degradation by the proteasome.

Rattus norvegicus (taxid: 10116)

>sp|Q9Y679|AUP1_HUMAN Ancient ubiquitous protein 1 OS=Homo sapiens GN=AUP1 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 28/183 (15%)

Query: 55  LKFLPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRL----VRALATQ 110
           +++L  + R   E +E+   R++  +A E   + T  TP++K E  KR     +R  + Q
Sbjct: 289 VRWLRPVHRQLGEANEEFALRVQQLVAKELGQTGTRLTPADKAEHMKRQRHPRLRPQSAQ 348

Query: 111 NSGARRY----DSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS---- 162
           +S         D ++   AQR++E+ P++PL  I R+L ++ G  +LTI+ L+  +    
Sbjct: 349 SSFPPSPGPSPDVQLATLAQRVKEVLPHVPLGVIQRDLAKT-GCVDLTITNLLEGAVAFM 407

Query: 163 ------SFQNLSFNSSSSFNQSPSPSSPSTPQ-----FNASPHNRMSAFAEKKAQFIAEA 211
                   Q+L   S+S F   PS S P TPQ     F  S   R  +  E+K      A
Sbjct: 408 PEDITKGTQSLPTASASKF---PS-SGPVTPQPTALTFAKSSWARQESLQERKQALYEYA 463

Query: 212 RRR 214
           RRR
Sbjct: 464 RRR 466

May play a role in the translocation of terminally misfolded proteins from the endoplasmic reticulum lumen to the cytoplasm and their degradation by the proteasome.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
242020608	393	ancient ubiquitous protein, putative [Pe	0.729	0.404	0.288	3e-11
348528643	420	PREDICTED: ancient ubiquitous protein 1-	0.844	0.438	0.236	3e-09
387014566	402	ancient ubiquitous protein 1-like protei	0.885	0.480	0.276	6e-09
315468524	423	ancient ubiquitous protein 1 [Danio reri	0.917	0.472	0.239	8e-08
37590396	423	Ancient ubiquitous protein 1 [Danio reri	0.917	0.472	0.239	8e-08
432880225	417	PREDICTED: ancient ubiquitous protein 1-	0.798	0.417	0.228	1e-07
213511939	418	ancient ubiquitous protein 1 [Salmo sala	0.798	0.416	0.241	2e-07
120538030	440	LOC100036951 protein [Xenopus laevis]	0.917	0.454	0.25	4e-07
73980454	410	PREDICTED: ancient ubiquitous protein 1	0.711	0.378	0.306	5e-07
193659786	394	PREDICTED: ancient ubiquitous protein 1-	0.655	0.362	0.270	5e-07

>gi|242020608|ref|XP_002430744.1| ancient ubiquitous protein, putative [Pediculus humanus corporis] gi|212515941|gb|EEB18006.1| ancient ubiquitous protein, putative [Pediculus humanus corporis]

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 28/187 (14%)

Query: 55  LKFLPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRL---VRALATQN 111
           +K+L V+K+ +NE+ ED+  RIE  IA E  +  T  T ++K ELEKRL   ++ +    
Sbjct: 195 IKYLTVVKQMENESPEDMSKRIETLIANELDVPVTNFTVNDKLELEKRLSCEMKVIKQPQ 254

Query: 112 SGARRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLI------------ 159
           +     D  +   A +++++ P++PL+ I ++LG +  N +LT++  +            
Sbjct: 255 TIRTNIDPGLIEMASKVKDVLPDVPLSVIYKDLGTTR-NVDLTVANFLEGLIKYTPEKMT 313

Query: 160 ---------ADSSFQN--LSFNSSSSFNQSPSPS-SPSTPQFNASPHNRMSAFAEKKAQF 207
                      S F+N   S N++   +  PS S + S+  F+ S   RM +F E+K + 
Sbjct: 314 SSSSDSLTSTTSGFENRKSSLNATVGGSAQPSTSFNTSSKTFHKSAQERMISFQERKLRL 373

Query: 208 IAEARRR 214
           I  AR+R
Sbjct: 374 IQNARQR 380

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348528643|ref|XP_003451826.1| PREDICTED: ancient ubiquitous protein 1-like [Oreochromis niloticus]

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 113/271 (41%), Gaps = 87/271 (32%)

Query: 28  LKSFLCRTEA--PIVLFPEEETTNGKKGLLKF---------------------------- 57
           L+S+ C  E   P++LFPEE+TTNG+ GLLKF                            
Sbjct: 140 LQSY-CSAEGTTPLLLFPEEDTTNGRAGLLKFSSWPFSLTESIQPVALRVTRPLISLSTP 198

Query: 58  -----------------------LPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPS 94
                                  LP + R   E+ ++  ++++  +A E  L  T  T +
Sbjct: 199 ESSWLTELLWTFFVPWTVYHVSWLPTVSRQDGESTQEFANKVQELLAAELGLVATKITKA 258

Query: 95  EKYELEKRLVRALATQNSGARRY----------------------DSRMYAEAQRIREIF 132
           +K E  KR  R +  Q + +  +                      D R+   AQ+++++ 
Sbjct: 259 DKAEHIKR-TRHIVPQTTTSNFFFFLNVGVTPGSIGLGFMSLGTDDRRIAKMAQQVKDVL 317

Query: 133 PNIPLNAIVRELGRSHGNAELTISRLIADSSFQNL------SFNSS--SSFNQSPSPS-S 183
           P++PLN I ++L +++   + TI+ L+ +    ++      +F  S  SS++  P+P+  
Sbjct: 318 PHVPLNVITKDLAKTNC-VDTTITNLLENKEETSMEATGISTFGPSKISSYSSGPAPTLK 376

Query: 184 PSTPQFNASPHNRMSAFAEKKAQFIAEARRR 214
           P+   F  SP +R  +  E+K      ARRR
Sbjct: 377 PAAKAFGKSPTDRHLSLQERKEALYNFARRR 407

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|387014566|gb|AFJ49402.1| ancient ubiquitous protein 1-like protein [Crotalus adamanteus]

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 105/250 (42%), Gaps = 57/250 (22%)

Query: 20  SRSTFLSKLKSFLCRTEA--PIVLFPEEETTNGKKGLLKF-------------------- 57
           SR   L  LK + C   A  P++LFPEE TTNG+ GLL+F                    
Sbjct: 141 SRVELLESLKGY-CSQGANPPLLLFPEEATTNGRVGLLRFRAWLALPGSLSCSGLSSFLS 199

Query: 58  -----LPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRLVRALA---- 108
                LP + R   ET E+   R++  +A E  +  T  T ++K E  KRL   L     
Sbjct: 200 PFIKWLPSVCRQAEETREEFALRVQELLALELGVVSTCLTAADKAEHLKRLHHHLPASRP 259

Query: 109 -------------TQNSGARRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTI 155
                           SGA   D  +   A+R+RE+ P +P+ AI ++L +++   + TI
Sbjct: 260 PPAPRQPSVGQPQVSRSGASMEDMHLIGMARRVREVLPQVPMAAIRKDLAQTN-CVDTTI 318

Query: 156 SRLIADSS-----FQNLSFNSSS-SFNQSPSPSSPSTPQ-----FNASPHNRMSAFAEKK 204
           + L+   +      +   F +++ SF  +  PS+  T       F  S   R  +  E+K
Sbjct: 319 ANLLEGRAPFVPEAETEGFVAAAPSFYGAQDPSTSRTAPAPGKVFARSSEARQLSLQERK 378

Query: 205 AQFIAEARRR 214
                 ARRR
Sbjct: 379 QALWDYARRR 388

Source: Crotalus adamanteus

Species: Crotalus adamanteus

Genus: Crotalus

Family: Viperidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|315468524|ref|NP_955984.2| ancient ubiquitous protein 1 [Danio rerio] gi|221222640|sp|Q6PBN5.2|AUP1_DANRE RecName: Full=Ancient ubiquitous protein 1 gi|41107566|gb|AAH65447.1| Ancient ubiquitous protein 1 [Danio rerio]

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 116/292 (39%), Gaps = 92/292 (31%)

Query: 9   GLINLGRNTRFSRSTFLSKLKSFLCRTEA-PIVLFPEEETTNGKKGLLKF---------- 57
           G + LG+    SR+     L  +    +  P++LFPEE+TTNG+ GLLKF          
Sbjct: 125 GFMELGQGVG-SRTELTETLHRYCSSPDTLPLLLFPEEDTTNGRTGLLKFSSWPFSVSDS 183

Query: 58  -----------------------------------------LPVMKRAQNETDEDLMSRI 76
                                                    LP + +   ET ++  S++
Sbjct: 184 IQPVALLVKRPFIAVSTPESSWLTELLWTFFVPFTVYHVRWLPPLSKEDGETHQEFASKV 243

Query: 77  EACIACEGRLSPTLCTPSEKYELEKRLVRA---LATQNSGAR--------------RYDS 119
           +  +A E  +  T  T ++K E  KR   +    A  N GAR                DS
Sbjct: 244 QGLLATELGVISTQITKADKAEHIKRKRHSAPQTAHSNLGARPRTVAQGFLGTSVGAEDS 303

Query: 120 RMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADSSFQNLSFNSSSSFNQ-- 177
           R+   AQ+++E+ P++P++ I R+L +++   + TI+ L+  +      FNS ++     
Sbjct: 304 RIARLAQQVKEVLPDVPVSVITRDLLQTNC-VDTTITNLLERTD----QFNSEAAMTMPS 358

Query: 178 -------SPSPSS--------PSTPQFNASPHNRMSAFAEKKAQFIAEARRR 214
                  S +PS+        P+   F  SP +R  +  E+K      ARRR
Sbjct: 359 GPGKAAASSTPSAMVSSPNLKPAAKSFGRSPIDRHMSLQERKEALYEYARRR 410

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|37590396|gb|AAH59643.1| Ancient ubiquitous protein 1 [Danio rerio]

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 116/292 (39%), Gaps = 92/292 (31%)

Query: 9   GLINLGRNTRFSRSTFLSKLKSFLCRTEA-PIVLFPEEETTNGKKGLLKF---------- 57
           G + LG+    SR+     L  +    +  P++LFPEE+TTNG+ GLLKF          
Sbjct: 125 GFMELGQGVG-SRTELTETLHRYCSSPDTLPLLLFPEEDTTNGRTGLLKFSSWPFSVSES 183

Query: 58  -----------------------------------------LPVMKRAQNETDEDLMSRI 76
                                                    LP + +   ET ++  S++
Sbjct: 184 IQPVALLVKRPFIAVSTPESSWLTELLWTFFVPFTVYHVRWLPPLSKEDGETHQEFASKV 243

Query: 77  EACIACEGRLSPTLCTPSEKYELEKRLVRA---LATQNSGAR--------------RYDS 119
           +  +A E  +  T  T ++K E  KR   +    A  N GAR                DS
Sbjct: 244 QGLLATELGVISTQITKADKAEHIKRKRHSAPQTAHSNLGARPRTVAQGFLGTSVGAEDS 303

Query: 120 RMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADSSFQNLSFNSSSSFNQ-- 177
           R+   AQ+++E+ P++P++ I R+L +++   + TI+ L+  +      FNS ++     
Sbjct: 304 RIARLAQQVKEVLPDVPVSVITRDLLQTNC-VDTTITNLLERTD----QFNSEAAMTMPS 358

Query: 178 -------SPSPSS--------PSTPQFNASPHNRMSAFAEKKAQFIAEARRR 214
                  S +PS+        P+   F  SP +R  +  E+K      ARRR
Sbjct: 359 GPGKAAASSTPSAMVSSPNLKPAAKSFGRSPIDRHMSLQERKEALYEYARRR 410

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432880225|ref|XP_004073612.1| PREDICTED: ancient ubiquitous protein 1-like [Oryzias latipes]

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 107/267 (40%), Gaps = 93/267 (34%)

Query: 33  CRTEA--PIVLFPEEETTNGKKGLLKF--------------------------------- 57
           C TE   P++LFPEE+TTNG+ GLLKF                                 
Sbjct: 146 CSTEGTQPLLLFPEEDTTNGRAGLLKFSSLPFSLTESVQPAALRVTRPLVSLNTAESSWL 205

Query: 58  ------------------LPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYEL 99
                             LP + R   E+ ++  ++++  +A E  +  T  T S+K E 
Sbjct: 206 VELLWTFFVPCTVYHVSWLPPVSRQDGESAQEFANKVQELLAGELGVVSTKITKSDKAEF 265

Query: 100 EKR-----------------------LVRALATQNSGARRYDSRMYAEAQRIREIFPNIP 136
            KR                       +V++L T        D R+   AQ+++++ P++P
Sbjct: 266 IKRSRHPPAPAQSRTGVAPGSIGLGFMVQSLGTD-------DPRLAKMAQQVKDVLPHVP 318

Query: 137 LNAIVRELGRSHGNAELTISRLIADSSFQNLSFNSSSSFNQ------SPSPSS---PSTP 187
           L+ I ++L +++   + TI+ L+ +     +  + +S++        S  P+S   P+  
Sbjct: 319 LSVITKDLAKTN-CVDTTITNLLENKEDAEVEASGTSAYGASSVACLSSGPASAIKPAAK 377

Query: 188 QFNASPHNRMSAFAEKKAQFIAEARRR 214
            F  SP +R  +  E+K      ARRR
Sbjct: 378 SFGKSPVDRHLSLQERKEALYNFARRR 404

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|213511939|ref|NP_001133804.1| ancient ubiquitous protein 1 [Salmo salar] gi|209155388|gb|ACI33926.1| Ancient ubiquitous protein 1 precursor [Salmo salar]

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 100/257 (38%), Gaps = 83/257 (32%)

Query: 38  PIVLFPEEETTNGKKGLLKF---------------------------------------- 57
           P++LFPEE+TTNG+ GLLKF                                        
Sbjct: 152 PLLLFPEEDTTNGRAGLLKFSSWPFSLTDSIQPMALQVKRPFLALSTPDSFWLTELLWTF 211

Query: 58  -----------LPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKR---L 103
                      LP + R   E+ ++  ++I+  +A E  +  T  T ++K E  KR   +
Sbjct: 212 FVPCTVYHVRWLPPVSRQDEESVQEFANKIQGLLATELGVVSTQITKADKAEHVKRKRHV 271

Query: 104 VRALATQNSGAR------------RYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNA 151
                T N GAR              + R+   AQ+++E+ P+IPL  I R+L +++   
Sbjct: 272 APHTTTSNLGARPPPMGFMVRSSGVEELRISRMAQQVKEVLPDIPLGVITRDLVQTNC-V 330

Query: 152 ELTISRLIADSSFQNLSFNSSSSFNQSPSPS--------------SPSTPQFNASPHNRM 197
           + TI+ L+   S +     ++     +P PS               P+   F  SP +R 
Sbjct: 331 DTTITNLL--ESTEEFPLEATGGATSAPGPSWRSLSVSATPAPTIKPAAKSFGKSPVDRH 388

Query: 198 SAFAEKKAQFIAEARRR 214
            +  E+K      ARRR
Sbjct: 389 MSLQERKEAMYEFARRR 405

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|120538030|gb|AAI29706.1| LOC100036951 protein [Xenopus laevis]

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 105/260 (40%), Gaps = 60/260 (23%)

Query: 9   GLINLGRNTRFSRSTFLSKLKSFLCRTE-APIVLFPEEETTNGKKGLLKF---------- 57
           G + LG     SR+  +  LK +L +   AP++LFPEE+TTNG+ GLL F          
Sbjct: 167 GFLELG--ALGSRTQLMESLKHYLSQPGGAPLLLFPEEDTTNGRTGLLHFSSWPFSLSDS 224

Query: 58  -----------------------------------------LPVMKRAQNETDEDLMSRI 76
                                                    LP + R   E+DED   R+
Sbjct: 225 VQPLSLTVQRPLIAVAVSGCSWVTELFWLLFIPFTVYQVRWLPSVCRLPRESDEDFACRV 284

Query: 77  EACIACEGRLSPTLCTPSEKYELEKRLVRALATQNSGARRYDSRMYAEAQRIREIFPNIP 136
           +  ++    +  T  T +++ E  KR  R        ++         AQ ++E+ P +P
Sbjct: 285 QQIVSLSLGVVATRHTAADRAEYVKR--RRCELPAPKSQPLSPTHIQMAQHVKEVLPQVP 342

Query: 137 LNAIVRELGRSHGNAELTISRLI-ADSSFQNLSFNSSSSFNQSPSPSSPSTPQ-FNASPH 194
           L+AI R+LG + G  + TI+  +    +F      + ++   S S  S   PQ F   P 
Sbjct: 343 LSAIHRDLGHT-GCVDTTITNFLEGRVTFVAEEETTGAAEGTSKSRVSRPLPQGFAKKPE 401

Query: 195 NRMSAFAEKKAQFIAEARRR 214
           +R  +  ++K Q + E  RR
Sbjct: 402 DRHLSLQDRK-QILYECARR 420

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|73980454|ref|XP_852590.1| PREDICTED: ancient ubiquitous protein 1 isoform 2 [Canis lupus familiaris]

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 28/183 (15%)

Query: 55  LKFLPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRL----VRALATQ 110
           +++LP + R   E +E+   R++  +A E   + T  TP++K E  KR     +R  + Q
Sbjct: 223 VRWLPPVHRQLGEGNEEFALRVQQLVAKELGQTGTRLTPADKAEHMKRQRHPRLRPQSAQ 282

Query: 111 NSGARRY----DSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS---- 162
           +S         D ++ A AQR++E+ P++PL  I R+L R+ G  +LTI+ L+  +    
Sbjct: 283 SSFPPSPGPSPDVQLAALAQRVKEVLPHVPLGVIQRDLART-GCVDLTITNLLEGAVAFM 341

Query: 163 ------SFQNLSFNSSSSFNQSPSPSSPSTPQ-----FNASPHNRMSAFAEKKAQFIAEA 211
                   Q+L   S+  F   PS S P TPQ     F  S   R  +  E+K      A
Sbjct: 342 PEDITEGTQSLPTASAPKF---PS-SGPVTPQPTALTFAKSSWARQESLQERKQALYEYA 397

Query: 212 RRR 214
           RRR
Sbjct: 398 RRR 400

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|193659786|ref|XP_001946551.1| PREDICTED: ancient ubiquitous protein 1-like [Acyrthosiphon pisum]

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 31/174 (17%)

Query: 56  KFLPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRLVRALATQNSGAR 115
           K L V++R ++E++E LMSR+E  I+ E  +S +  T ++K E +K+    LA     AR
Sbjct: 225 KLLEVIRRCEDESNETLMSRVEIAISQELNISTSNITKNDKEEYKKKYFLELA---DNAR 281

Query: 116 RY-----------DSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADSSF 164
           ++           D  +   A ++ ++ P +P N +V  L R+    ++TI+ ++     
Sbjct: 282 KHNKHATLDNFEEDPEILRMAAQVTDVLPYVPQNVVVANLRRTRC-VDITITNIL----- 335

Query: 165 QNLSFNSSSSFNQSPSPSSPSTPQFNAS---PHNR-MSAFAEKKAQFIAEARRR 214
                    +   +P P S   P+       P+N  + +F E+KA+ I EAR+R
Sbjct: 336 -------DGTIKFTPLPQSSKVPKTTTKKTEPNNFGVGSFMERKAKLIDEARQR 382

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
UNIPROTKB|F6XB90	410	AUP1 "Uncharacterized protein"	0.477	0.253	0.318	2.4e-12
UNIPROTKB|E2QYU0	471	AUP1 "Uncharacterized protein"	0.477	0.220	0.318	3.8e-12
RGD|1591777	410	Aup1 "ancient ubiquitous prote	0.472	0.251	0.315	6.7e-12
UNIPROTKB|F8WG16	439	Aup1 "Ancient ubiquitous prote	0.472	0.234	0.315	8.4e-12
MGI|MGI:107789	410	Aup1 "ancient ubiquitous prote	0.472	0.251	0.307	4e-11
UNIPROTKB|F1SNV5	341	AUP1 "Uncharacterized protein"	0.477	0.304	0.294	8.5e-11
UNIPROTKB|Q9Y679	476	AUP1 "Ancient ubiquitous prote	0.477	0.218	0.292	4.7e-10
UNIPROTKB|Q3ZC65	410	AUP1 "Ancient ubiquitous prote	0.477	0.253	0.300	1.1e-09
ZFIN|ZDB-GENE-030131-3375	423	aup1 "ancient ubiquitous prote	0.220	0.113	0.42	3.1e-09
WB|WBGene00018408	390	F44B9.5 [Caenorhabditis elegan	0.224	0.125	0.411	4.3e-09

UNIPROTKB|F6XB90 AUP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 125 (49.1 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
 Identities = 36/113 (31%), Positives = 63/113 (55%)

Query:    55 LKFLPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRL----VRALATQ 110
             +++LP + R   E +E+   R++  +A E   + T  TP++K E  KR     +R  + Q
Sbjct:   223 VRWLPPVHRQLGEGNEEFALRVQQLVAKELGQTGTRLTPADKAEHMKRQRHPRLRPQSAQ 282

Query:   111 NS----GARRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLI 159
             +S         D ++ A AQR++E+ P++PL  I R+L R+ G  +LTI+ L+
Sbjct:   283 SSFPPSPGPSPDVQLAALAQRVKEVLPHVPLGVIQRDLART-GCVDLTITNLL 334

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

UNIPROTKB|E2QYU0 AUP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 125 (49.1 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
 Identities = 36/113 (31%), Positives = 63/113 (55%)

Query:    55 LKFLPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRL----VRALATQ 110
             +++LP + R   E +E+   R++  +A E   + T  TP++K E  KR     +R  + Q
Sbjct:   284 VRWLPPVHRQLGEGNEEFALRVQQLVAKELGQTGTRLTPADKAEHMKRQRHPRLRPQSAQ 343

Query:   111 NS----GARRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLI 159
             +S         D ++ A AQR++E+ P++PL  I R+L R+ G  +LTI+ L+
Sbjct:   344 SSFPPSPGPSPDVQLAALAQRVKEVLPHVPLGVIQRDLART-GCVDLTITNLL 395

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

RGD|1591777 Aup1 "ancient ubiquitous protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 123 (48.4 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
 Identities = 36/114 (31%), Positives = 66/114 (57%)

Query:    55 LKFLPVMKRAQNETDEDLMSRIEACIACE-GRLSPTLCTPSEKYELEKRL----VRALAT 109
             +++L  ++R   E +E+   R++  +A E G++   L TP++K E  KR     +R  + 
Sbjct:   223 VRWLHPIRRQLGEENEEFALRVQQLVAKELGQIGTRL-TPADKAEHMKRQRHPRLRPQSV 281

Query:   110 QNS----GARRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLI 159
             Q+S     +   D ++   AQR++E+ P++PLN I R+L R+ G  +LTI+ L+
Sbjct:   282 QSSFPSPPSPSSDVQLTILAQRVKEVLPHVPLNVIQRDLART-GCVDLTITNLL 334

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F8WG16 Aup1 "Ancient ubiquitous protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 123 (48.4 bits), Expect = 8.4e-12, Sum P(2) = 8.4e-12
 Identities = 36/114 (31%), Positives = 66/114 (57%)

Query:    55 LKFLPVMKRAQNETDEDLMSRIEACIACE-GRLSPTLCTPSEKYELEKRL----VRALAT 109
             +++L  ++R   E +E+   R++  +A E G++   L TP++K E  KR     +R  + 
Sbjct:   252 VRWLHPIRRQLGEENEEFALRVQQLVAKELGQIGTRL-TPADKAEHMKRQRHPRLRPQSV 310

Query:   110 QNS----GARRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLI 159
             Q+S     +   D ++   AQR++E+ P++PLN I R+L R+ G  +LTI+ L+
Sbjct:   311 QSSFPSPPSPSSDVQLTILAQRVKEVLPHVPLNVIQRDLART-GCVDLTITNLL 363

GO:0005634 "nucleus" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

MGI|MGI:107789 Aup1 "ancient ubiquitous protein 1" [Mus musculus (taxid:10090)]

 Score = 118 (46.6 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
 Identities = 35/114 (30%), Positives = 64/114 (56%)

Query:    55 LKFLPVMKRAQNETDEDLMSRIEACIACE-GRLSPTLCTPSEKYELEKRL----VRALAT 109
             +++L  ++R   E  E+   R++  +A E G++   L TP++K E  KR     +R  + 
Sbjct:   223 VRWLHPIRRQLGEESEEFALRVQQLVAKELGQIGTRL-TPADKAEHMKRQRHPRLRPQSV 281

Query:   110 QNS----GARRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLI 159
             Q+S     +   D ++   A R++E+ P++PLN I R+L R+ G  +LTI+ L+
Sbjct:   282 QSSFPSPPSPSSDVQLTTLAHRVKEVLPHVPLNVIQRDLART-GCVDLTITNLL 334

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

UNIPROTKB|F1SNV5 AUP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 113 (44.8 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
 Identities = 33/112 (29%), Positives = 62/112 (55%)

Query:    55 LKFLPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRL----VRALATQ 110
             +++L  + R   E +E+   R++  +A E   + T  TP++K E  KR     +R  + Q
Sbjct:   155 VRWLRPVHRQLGEGNEEFALRVQQLLAKELGQTGTRLTPADKAEHMKRQRHPRLRPQSAQ 214

Query:   111 NS---GARRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLI 159
             +S        ++++   AQR++E+ P++PL  I R+L R+ G  +LTI+ L+
Sbjct:   215 SSFPPSPGPSEAQLATLAQRVKEVLPHVPLGVIQRDLART-GCVDLTITNLL 265

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

UNIPROTKB|Q9Y679 AUP1 "Ancient ubiquitous protein 1" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
 Identities = 33/113 (29%), Positives = 61/113 (53%)

Query:    55 LKFLPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRL----VRALATQ 110
             +++L  + R   E +E+   R++  +A E   + T  TP++K E  KR     +R  + Q
Sbjct:   289 VRWLRPVHRQLGEANEEFALRVQQLVAKELGQTGTRLTPADKAEHMKRQRHPRLRPQSAQ 348

Query:   111 NS----GARRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLI 159
             +S         D ++   AQR++E+ P++PL  I R+L ++ G  +LTI+ L+
Sbjct:   349 SSFPPSPGPSPDVQLATLAQRVKEVLPHVPLGVIQRDLAKT-GCVDLTITNLL 400

GO:0016021 "integral to membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q3ZC65 AUP1 "Ancient ubiquitous protein 1" [Bos taurus (taxid:9913)]

 Score = 110 (43.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 34/113 (30%), Positives = 59/113 (52%)

Query:    55 LKFLPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKRL----VRALATQ 110
             +++L  + R   E  E+   R++  +A E   + T  TP++K E  KR     +R  + Q
Sbjct:   223 VRWLRPVHRQLGEGSEEFALRVQQLVAKELGQTGTRLTPADKAEHMKRQRHPRLRPQSAQ 282

Query:   111 NSGARRY----DSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLI 159
             +S         D  +   AQR++E+ P++PL  I R+L R+ G  +LTI+ L+
Sbjct:   283 SSFPHSPGPSPDVHLATLAQRVKEVLPHVPLGVIQRDLART-GCVDLTITNLL 334

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

ZFIN|ZDB-GENE-030131-3375 aup1 "ancient ubiquitous protein 1" [Danio rerio (taxid:7955)]

 Score = 95 (38.5 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query:     9 GLINLGRNTRFSRSTFLSKLKSFLCRTEA-PIVLFPEEETTNGKKGLLKF 57
             G + LG+    SR+     L  +    +  P++LFPEE+TTNG+ GLLKF
Sbjct:   125 GFMELGQGVG-SRTELTETLHRYCSSPDTLPLLLFPEEDTTNGRTGLLKF 173

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

WB|WBGene00018408 F44B9.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 98 (39.6 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
 Identities = 21/51 (41%), Positives = 31/51 (60%)

Query:     7 CLGLINLGRNTRFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF 57
             C G ++LG  TR  R   +S+ K  L R + P++ FPE   T+G+K L+KF
Sbjct:   132 CFGYVDLGA-TR-GRDQLVSRAKQLLTREQMPLLAFPEGIITSGEKALIKF 180

GO:0008152 "metabolic process" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	218
pfam02845	42	pfam02845, CUE, CUE domain	7e-06
smart00546	43	smart00546, CUE, Domain that may be involved in bi	0.001

>gnl|CDD|202430 pfam02845, CUE, CUE domain

 Score = 41.3 bits (98), Expect = 7e-06
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 123 AEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162
              + ++E+FP++    I   L  S+GN E  I  L+  S
Sbjct: 3   EMLETLKEMFPDLDEEVIRAVLQASNGNVEAAIDALLEGS 42

CUE domains have been shown to bind ubiquitin. It has been suggested that CUE domains are related to pfam00627 and this has been confirmed by the structure of the domain. CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Length = 42

>gnl|CDD|214715 smart00546, CUE, Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)

 Score = 35.2 bits (82), Expect = 0.001
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 124 EAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS 162
               ++E+FPN+    I   L  + GN E TI+ L+  S
Sbjct: 5   ALHDLKEMFPNLDEEVIEAVLEANTGNVEATINNLLEGS 43

CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press). Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
PLN02833	376	glycerol acyltransferase family protein	99.43
cd07991	211	LPLAT_LPCAT1-like Lysophospholipid Acyltransferase	99.38
KOG4666|consensus	412		99.1
PF02845	42	CUE: CUE domain; InterPro: IPR003892 This domain m	98.98
PLN02499	498	glycerol-3-phosphate acyltransferase	98.96
smart00546	43	CUE Domain that may be involved in binding ubiquit	98.96
PLN02588	525	glycerol-3-phosphate acyltransferase	98.9
PLN02177	497	glycerol-3-phosphate acyltransferase	98.81
KOG2898|consensus	354		98.77
PRK15018	245	1-acyl-sn-glycerol-3-phosphate acyltransferase; Pr	97.97
KOG2848|consensus	276		97.06
PLN02901	214	1-acyl-sn-glycerol-3-phosphate acyltransferase	96.91
PF01553	132	Acyltransferase: Acyltransferase; InterPro: IPR002	96.38
PF11547	53	E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro	96.22
cd07990	193	LPLAT_LCLAT1-like Lysophospholipid Acyltransferase	96.13
cd07988	163	LPLAT_ABO13168-like Lysophospholipid Acyltransfera	96.11
cd07993	205	LPLAT_DHAPAT-like Lysophospholipid Acyltransferase	96.07
smart00563	118	PlsC Phosphate acyltransferases. Function in phosp	95.62
cd07992	203	LPLAT_AAK14816-like Lysophospholipid Acyltransfera	95.26
KOG2898|consensus	354		95.14
PTZ00261	355	acyltransferase; Provisional	95.0
cd06551	187	LPLAT Lysophospholipid acyltransferases (LPLATs) o	94.82
COG0204	255	PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferas	94.44
TIGR00530	130	AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltra	93.98
PLN02380	376	1-acyl-sn-glycerol-3-phosphate acyltransferase	93.51
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	93.34
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	92.47
PLN02510	374	probable 1-acyl-sn-glycerol-3-phosphate acyltransf	92.41
cd07986	210	LPLAT_ACT14924-like Lysophospholipid Acyltransfera	92.28
KOG1505|consensus	346		91.79
KOG4666|consensus	412		90.48
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	90.18
PRK14014	301	putative acyltransferase; Provisional	89.19
KOG3037|consensus	330		82.19
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	80.66
cd07989	184	LPLAT_AGPAT-like Lysophospholipid Acyltransferases	80.38
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	80.16

>PLN02833 glycerol acyltransferase family protein

Probab=99.43  E-value=1.6e-13  Score=127.94  Aligned_cols=87  Identities=22%  Similarity=0.270  Sum_probs=77.3

Q ss_pred             eecCCCCcccHHHHHHHHHHHhccC-CCCeEeccCcccccCccccccc--------------------------------
Q psy15354         11 INLGRNTRFSRSTFLSKLKSFLCRT-EAPIVLFPEEETTNGKKGLLKF--------------------------------   57 (218)
Q Consensus        11 ~~~g~~~~~sR~~~~~~ik~~~~~~-~~PlliFPEGt~TNg~~~Ll~F--------------------------------   57 (218)
                      +|++...  +++.+.+.+++++... +.||+||||||||||. .+++|                                
T Consensus       213 VdR~~~~--~~~~~~~~l~~~l~~~~G~~llIFPEGTrs~~~-~l~~FK~Gaf~~g~pI~PVaI~y~~~~~~~fW~s~~~  289 (376)
T PLN02833        213 FNRTEAK--DREVVAKKLRDHVQDPDRNPLLIFPEGTCVNNE-YTVMFKKGAFELGCTVCPIAIKYNKIFVDAFWNSRKQ  289 (376)
T ss_pred             ecCCCHH--HHHHHHHHHHHHHHhcCCCEEEEEcCccccCCC-cccccchhhHhcCCeEEEEEEEecCcccccccCCCCc
Confidence            7887655  8888999999998864 5899999999999999 89999                                


Q ss_pred             ---------------------cccccCCCCCCHHHHHHHHHHHHHHhCCCCccCCCHHHHHHHH
Q psy15354         58 ---------------------LPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEKYELE  100 (218)
Q Consensus        58 ---------------------LP~~~~~~~E~~~~FA~rV~~~iA~~Lgi~~t~~t~~dk~e~~  100 (218)
                                           |||+.+.++|++.+||++|+..||++||+++++|+..-|....
T Consensus       290 s~~~~l~~ll~~~~~~v~V~~LpPi~~~~~e~~~efA~rv~~~Ia~~lgi~~~~wdg~lk~~~~  353 (376)
T PLN02833        290 SFTMHLLRLMTSWAVVCDVWYLEPQTLRPGETPIEFAERVRDMIAKRAGLKKVPWDGYLKYYRP  353 (376)
T ss_pred             cHHHhHHHHhCCCceEEEEEECCCcCCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCceeecCC
Confidence                                 7888877889999999999999999999999999998776554

>cd07991 LPLAT_LPCAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LPCAT1-like

Probab=99.38  E-value=1.1e-12  Score=111.67  Aligned_cols=84  Identities=29%  Similarity=0.442  Sum_probs=73.8

Q ss_pred             eecCCCCcccHHHHHHHHHHHhccC-CCCeEeccCcccccCccccccc--------------------------------
Q psy15354         11 INLGRNTRFSRSTFLSKLKSFLCRT-EAPIVLFPEEETTNGKKGLLKF--------------------------------   57 (218)
Q Consensus        11 ~~~g~~~~~sR~~~~~~ik~~~~~~-~~PlliFPEGt~TNg~~~Ll~F--------------------------------   57 (218)
                      +|++...  ++.++++.+.+.+... +.+|+||||||++||. .|++|                                
T Consensus        73 v~R~~~~--~~~~~~~~~~~~~~~~~g~~v~iFPEGtrs~~~-~l~~Fk~gaf~~~~pI~Pv~i~~~~~~~~~~~~~~~~  149 (211)
T cd07991          73 VDRSEPK--DRKKVVEEIKERATDPNWPPILIFPEGTTTNGK-ALIMFKKGAFEPGVPVQPVAIRYPNKFVDAFWNSSGY  149 (211)
T ss_pred             EeCCCch--hHHHHHHHHHHHHhCCCCCeEEEecCccccCCC-EEEeeccccccCCCeeEEEEEEecCccCCcccCCCCc
Confidence            6777654  6688889999998874 5899999999999999 89999                                


Q ss_pred             ---------------------cccccC-CCCCCHHHHHHHHHHHHHHhCCCCccCCCHHHHH
Q psy15354         58 ---------------------LPVMKR-AQNETDEDLMSRIEACIACEGRLSPTLCTPSEKY   97 (218)
Q Consensus        58 ---------------------LP~~~~-~~~E~~~~FA~rV~~~iA~~Lgi~~t~~t~~dk~   97 (218)
                                           |||+.+ .++++.++|+++|++.|++.||++.|+||.+||.
T Consensus       150 ~~~~~l~~~l~~~~~~v~v~~l~pi~~~~~~~~~~~l~~~v~~~i~~~l~~~~~~~~~~~~~  211 (211)
T cd07991         150 SSLMYLFRLLTQPANVLEVEFLPVYTPSEEGEDPKEFANRVRLIMANKLGLPATDWTGEDKR  211 (211)
T ss_pred             cHHHHHHHHhCCcceEEEEEECCCcccccCCCCHHHHHHHHHHHHHHhcCCCccCCCCcccC
Confidence                                 677777 5678999999999999999999999999999983

Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lysophosphatidylcholine acyltransferase 1 (LPCAT-1), glycerol-3-phosphate acyltransferase 3 (GPAT3), and similar sequences.

>KOG4666|consensus

Probab=99.10  E-value=8.2e-11  Score=108.02  Aligned_cols=88  Identities=11%  Similarity=-0.087  Sum_probs=75.5

Q ss_pred             cceecCCCCcccHHHHHHHHHHHhccCC--CCeEeccCcccccCccccccc-----------------------------
Q psy15354          9 GLINLGRNTRFSRSTFLSKLKSFLCRTE--APIVLFPEEETTNGKKGLLKF-----------------------------   57 (218)
Q Consensus         9 g~~~~g~~~~~sR~~~~~~ik~~~~~~~--~PlliFPEGt~TNg~~~Ll~F-----------------------------   57 (218)
                      |++-+-.+.  ||+..++.|+....+..  +.|||||||+||    ||+.|                             
T Consensus        54 ~l~~~~~~d--s~k~tV~~i~~~~~~~~~~~qIll~~~~~C~----~~~~Fk~~~~~P~~~~q~~~l~y~n~~~~~t~Wq  127 (412)
T KOG4666|consen   54 GLGPFPMTE--NIKLAVALVTLVPLRFLLSMSILLLYYLICR----VFTLFSAPYRGPEEEEDEGGVVFQEDYAHMEGWK  127 (412)
T ss_pred             eeccCCChH--HHHHHHHHHHHhhhccCCCceeeeeeccceE----EEEEecCCccCCCCCcCcceEeccccccceeccc
Confidence            445555555  99999999998877776  469999999999    89999                             


Q ss_pred             -----------------------cccccCCCCC--CHHHHHHHHHHHHHHhCCCCccCCCHHHHHHHHHH
Q psy15354         58 -----------------------LPVMKRAQNE--TDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKR  102 (218)
Q Consensus        58 -----------------------LP~~~~~~~E--~~~~FA~rV~~~iA~~Lgi~~t~~t~~dk~e~~kr  102 (218)
                                             +|+++|+++|  |+..||..|+..||++||+++|++|++|...+...
T Consensus       128 ~~~~v~~~~~~~~~l~~~~~~~~i~~~~P~~ee~~d~~~~at~v~~~maealg~~vtd~t~edc~l~vs~  197 (412)
T KOG4666|consen  128 RTVIVRSGRFLSRVLLFVFGFYWIHESCPDRDSDMDSNPKTTSTEINMAEALGTEVTDRTGEDCSLHVSY  197 (412)
T ss_pred             cchHHHHHHHHHHHHHhheeEEEEeccCCChhhhcCCcccchhHHHHHHHhhCCCCCCCchHHHHHHHhh
Confidence                                   9999998766  67899999999999999999999999998776443

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=98.98  E-value=7.2e-10  Score=72.88  Aligned_cols=40  Identities=25%  Similarity=0.429  Sum_probs=37.1

Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcC
Q psy15354        122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIAD  161 (218)
Q Consensus       122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~G  161 (218)
                      +.+++++++|||+++...|.++|..++|+|+.||+.||+|
T Consensus         2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~   41 (42)
T PF02845_consen    2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEM   41 (42)
T ss_dssp             HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            5789999999999999999999999899999999999986

CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.

>PLN02499 glycerol-3-phosphate acyltransferase

Probab=98.96  E-value=1.5e-09  Score=104.53  Aligned_cols=74  Identities=24%  Similarity=0.315  Sum_probs=65.7

Q ss_pred             HHHHHHHHHhccCCCCeEeccCcccccCccccccc---------------------------------------------
Q psy15354         23 TFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF---------------------------------------------   57 (218)
Q Consensus        23 ~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F---------------------------------------------   57 (218)
                      .-.+.+++.+++.+  |+||||||+++.- .|++|                                             
T Consensus       341 ~d~~air~lL~~G~--lvIFPEGTrsreg-~LlrFk~l~aela~pVVPVAI~~~~~~f~gtta~g~k~~Dp~~f~mnP~p  417 (498)
T PLN02499        341 VDAEKIKRELARGD--LVVCPEGTTCREP-FLLRFSALFAELTDRIVPVAMNYRVGFFHATTARGWKGLDPIFFFMNPRP  417 (498)
T ss_pred             hHHHHHHHHhhCCC--EEEcCCCCCCCCC-cccccchhhhhhcCceEeEEEEeccceEEEEcCCCCchhhhhhheecCCc
Confidence            34477888888777  9999999999998 89999                                             


Q ss_pred             ------cccccCC----CCCCHHHHHHHHHHHHHHhCCCCccCCCHHHHHHH
Q psy15354         58 ------LPVMKRA----QNETDEDLMSRIEACIACEGRLSPTLCTPSEKYEL   99 (218)
Q Consensus        58 ------LP~~~~~----~~E~~~~FA~rV~~~iA~~Lgi~~t~~t~~dk~e~   99 (218)
                            ||++..+    .++++.+||++||+.||++||...|.+|-+||...
T Consensus       418 ~y~v~fL~~~~~~~t~~~g~s~~evan~vQ~~la~~LgfecT~lTrkdKy~~  469 (498)
T PLN02499        418 VYEVTFLNQLPVEATCSSGKSPHDVANYVQRILAATLGFECTNFTRKDKYRV  469 (498)
T ss_pred             eEEEEEcCCCChhhccCCCCChHHHHHHHHHHHHHHhCCccccccHHHHHHH
Confidence                  8888776    58999999999999999999999999999999653

>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=98.96  E-value=1.3e-09  Score=71.80  Aligned_cols=42  Identities=29%  Similarity=0.464  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354        121 MYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS  162 (218)
Q Consensus       121 ~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr  162 (218)
                      ...+++++++|||+++...|.++|+.++|+|+.||++||+|.
T Consensus         2 ~~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~~   43 (43)
T smart00546        2 NDEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEGS   43 (43)
T ss_pred             hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence            467999999999999999999999988999999999999873

CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)

>PLN02588 glycerol-3-phosphate acyltransferase

Probab=98.90  E-value=3e-09  Score=102.65  Aligned_cols=79  Identities=19%  Similarity=0.259  Sum_probs=62.4

Q ss_pred             eecCCCCcccHHHHHHHHHHHhccCCCCeEeccCcccccCccccccc---------------------------------
Q psy15354         11 INLGRNTRFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF---------------------------------   57 (218)
Q Consensus        11 ~~~g~~~~~sR~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F---------------------------------   57 (218)
                      ++++...  +++++    ++.++..+  ++||||||++++- .|++|                                 
T Consensus       375 VdRdr~~--D~~aI----~~LLk~Gd--lVIFPEGTRsr~g-~LlrFk~l~A~la~~IVPVAI~~~~~~f~gtt~~g~k~  445 (525)
T PLN02588        375 LTRDRVK--DGQAM----EKLLSQGD--LVVCPEGTTCREP-YLLRFSPLFSEVCDVIVPVAIDSHVTFFYGTTASGLKA  445 (525)
T ss_pred             ecCCCcc--hHHHH----HHHHhCCC--EEEccCccccCCC-cccChhhhHHHhcCceeeEEEEEeccccceeecCCCcc
Confidence            6666432  44333    44433444  8999999999998 89999                                 


Q ss_pred             ------------------cccccC------CC---CCCHHHHHHHHHHHHHHhCCCCccCCCHHHHHH
Q psy15354         58 ------------------LPVMKR------AQ---NETDEDLMSRIEACIACEGRLSPTLCTPSEKYE   98 (218)
Q Consensus        58 ------------------LP~~~~------~~---~E~~~~FA~rV~~~iA~~Lgi~~t~~t~~dk~e   98 (218)
                                        ||+++.      +.   ++++.+||++||..||++||+.+|.+|.+||..
T Consensus       446 ~D~~~fl~nP~p~y~V~fL~~v~~~~e~~~~~p~~g~s~~evAn~VQ~~iA~~LG~e~T~~Tr~dkY~  513 (525)
T PLN02588        446 FDPIFFLLNPFPSYTVQLLDPVSGSSSSTCQDPDNGKLKFEVANHVQHEIGNALGFECTNLTRRDKYL  513 (525)
T ss_pred             cceeEEEecCCceEEEEEcCcCCchhhhcccCcccCCChHHHHHHHHHHHHHhhCceecccchhhhhh
Confidence                              888875      21   588899999999999999999999999999954

>PLN02177 glycerol-3-phosphate acyltransferase

Probab=98.81  E-value=9.5e-09  Score=99.14  Aligned_cols=70  Identities=23%  Similarity=0.314  Sum_probs=60.8

Q ss_pred             HHHHHhccCCCCeEeccCcccccCccccccc-------------------------------------------------
Q psy15354         27 KLKSFLCRTEAPIVLFPEEETTNGKKGLLKF-------------------------------------------------   57 (218)
Q Consensus        27 ~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F-------------------------------------------------   57 (218)
                      .+++.++..  .++||||||.+++. .|+.|                                                 
T Consensus       358 ~~~~lL~~g--~lvIFPEGTrs~~~-~l~~Fk~~fa~l~~pIVPVAI~~~~~~f~~~t~~~~~~~d~~~~~~~p~~~y~V  434 (497)
T PLN02177        358 NIKRLLEEG--DLVICPEGTTCREP-FLLRFSALFAELTDRIVPVAINTKQSMFHGTTVRGYKLLDPYFVFMNPRPTYEI  434 (497)
T ss_pred             HHHHHHhcC--CEEECcCcCCCCCC-CcchHHHHHHHHCCcEEEEEEEcccccccccccccceecchhhhhcCCCceEEE
Confidence            456665553  69999999999887 89999                                                 


Q ss_pred             --cccccCCC----CCCHHHHHHHHHHHHHHhCCCCccCCCHHHHHHH
Q psy15354         58 --LPVMKRAQ----NETDEDLMSRIEACIACEGRLSPTLCTPSEKYEL   99 (218)
Q Consensus        58 --LP~~~~~~----~E~~~~FA~rV~~~iA~~Lgi~~t~~t~~dk~e~   99 (218)
                        ||++.+.+    +++..++|++||+.||++||...|.+|.+||...
T Consensus       435 ~fL~~l~~~~~~~~~~~~~evAn~Vq~~i~~~lg~~~t~~tr~dk~~~  482 (497)
T PLN02177        435 TFLNQLPKELTCKGGKSPIEVANYIQRVLAGTLGFECTNLTRKDKYAI  482 (497)
T ss_pred             EECCCCChhhcccCCCCHHHHHHHHHHHHHHhhCceeccccHHHHHHH
Confidence              88988874    7899999999999999999999999999999653

>KOG2898|consensus

Probab=98.77  E-value=6e-09  Score=96.72  Aligned_cols=76  Identities=26%  Similarity=0.440  Sum_probs=72.9

Q ss_pred             cHHHHHHHHHHHhccCC-CCeEeccCcccccCccccccc-----------------------------------------
Q psy15354         20 SRSTFLSKLKSFLCRTE-APIVLFPEEETTNGKKGLLKF-----------------------------------------   57 (218)
Q Consensus        20 sR~~~~~~ik~~~~~~~-~PlliFPEGt~TNg~~~Ll~F-----------------------------------------   57 (218)
                      +|+-..+..++++...+ .|+++||||||+||+ ++++|                                         
T Consensus       194 d~~~~~~~~~e~~~~~~~~~ii~fpegtCinn~-~~~~fk~k~~~e~~~~i~pvaik~~~~~~~~f~~s~~~s~~~~l~~  272 (354)
T KOG2898|consen  194 DRQVVAKRLAEHVWNERKEPILLFPEGTCINNT-KVMQFKLKGSFEEGVKIYPVAIKYDPRFGDAFWNSPELSFTRYLLE  272 (354)
T ss_pred             hhHhhhhhhhHHHhcCCCCcEEEeecceeeCCc-eeEEEecCCChhhcceeeeeeeecCccccccccCCccccHHHHHHH
Confidence            88889999999999998 899999999999999 99999                                         


Q ss_pred             -------------cccccCCCCCCHHHHHHHHHHHHHHhCCCCccCCCHHHH
Q psy15354         58 -------------LPVMKRAQNETDEDLMSRIEACIACEGRLSPTLCTPSEK   96 (218)
Q Consensus        58 -------------LP~~~~~~~E~~~~FA~rV~~~iA~~Lgi~~t~~t~~dk   96 (218)
                                   ||++.+..+|+..+||++|..+||...|++...|++.-|
T Consensus       273 ~~ts~~~v~~i~~l~~~~r~~~et~t~~a~~v~~~ig~~~gl~~~~~dg~lk  324 (354)
T KOG2898|consen  273 LMTSWAIVCDIWYLPPMRRDNDETATQFANRVKSLIGKSAGLKDLEWDGLLK  324 (354)
T ss_pred             HHhhhheeeeeeecccEEeecccchhHHHHHHHHHHHHhhCCcccCcCCcee
Confidence                         999999999999999999999999999999999999987

>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional

Probab=97.97  E-value=1.4e-05  Score=70.46  Aligned_cols=71  Identities=21%  Similarity=0.396  Sum_probs=53.1

Q ss_pred             eecCCCCcccHHHHHHHHHHHhccCCCCeEeccCcccccCccccccc---------------------------------
Q psy15354         11 INLGRNTRFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF---------------------------------   57 (218)
Q Consensus        11 ~~~g~~~~~sR~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F---------------------------------   57 (218)
                      +||+...  +..+.++...+.+.+.+..|+||||||.+.+. .+..|                                 
T Consensus       116 VdR~~~~--~~~~~l~~~~~~l~~~g~sv~IFPEGTRs~~g-~l~~Fk~Ga~~lA~~~~~PIvPv~i~g~~~~~~~~~~~  192 (245)
T PRK15018        116 IDRNNRT--KAHGTIAEVVNHFKKRRISIWMFPEGTRSRGR-GLLPFKTGAFHAAIAAGVPIIPVCVSTTSNKINLNRLH  192 (245)
T ss_pred             EeCCCHH--HHHHHHHHHHHHHHhCCCEEEEECCccCCCCC-CCCCccHHHHHHHHHcCCCEEEEEEECcccccccCCcc
Confidence            7777432  33345566666666667889999999999988 79999                                 


Q ss_pred             --------cccccCCC--CCCHHHHHHHHHHHHHHhC
Q psy15354         58 --------LPVMKRAQ--NETDEDLMSRIEACIACEG   84 (218)
Q Consensus        58 --------LP~~~~~~--~E~~~~FA~rV~~~iA~~L   84 (218)
                              +||+.+++  .++.++++++|+..|++.+
T Consensus       193 ~g~i~v~~~~PI~~~~~~~~~~~~l~~~v~~~i~~~~  229 (245)
T PRK15018        193 NGLVIVEMLPPIDVSQYGKDQVRELAAHCRSIMEQKI  229 (245)
T ss_pred             CeeEEEEEcCCCcCCCCChhhHHHHHHHHHHHHHHHH
Confidence                    67777653  2556799999999999865

>KOG2848|consensus

Probab=97.06  E-value=0.0013  Score=59.33  Aligned_cols=71  Identities=17%  Similarity=0.263  Sum_probs=53.0

Q ss_pred             ceecCCCCcccHHHHHHHH---HHHhccCCCCeEeccCcccccCccccccc-----------------------------
Q psy15354         10 LINLGRNTRFSRSTFLSKL---KSFLCRTEAPIVLFPEEETTNGKKGLLKF-----------------------------   57 (218)
Q Consensus        10 ~~~~g~~~~~sR~~~~~~i---k~~~~~~~~PlliFPEGt~TNg~~~Ll~F-----------------------------   57 (218)
                      |+||-     +|+.+++-+   -+...+.+.-|-+|||||=++.- +|+.|                             
T Consensus       139 fIdR~-----r~~~Ai~~l~~~~~~mkk~~~kvWvFPEGTRn~~g-~llPFKKGAF~lAvqaqVPIVPvv~ssy~~f~~~  212 (276)
T KOG2848|consen  139 FIDRS-----RREKAIDTLDKCAERMKKENRKVWVFPEGTRNKEG-RLLPFKKGAFHLAVQAQVPIVPVVFSSYGDFYST  212 (276)
T ss_pred             EEecC-----CHHHHHHHHHHHHHHHHhCCeeEEEccCCccCCCC-cccccccceeeeehhcCCCEEEEEEecccccccC
Confidence            47776     555555555   45555666789999999996666 89999                             


Q ss_pred             --------------cccccCCC--CCCHHHHHHHHHHHHHHhCCC
Q psy15354         58 --------------LPVMKRAQ--NETDEDLMSRIEACIACEGRL   86 (218)
Q Consensus        58 --------------LP~~~~~~--~E~~~~FA~rV~~~iA~~Lgi   86 (218)
                                    ||+++-+.  -+|-.+++++||..|++.+..
T Consensus       213 ~~k~f~sG~v~V~vL~pI~TeglT~ddv~~L~~~~R~~M~~~~~e  257 (276)
T KOG2848|consen  213 KEKVFNSGNVIVRVLPPIPTEGLTKDDVDVLSDECRSAMLETFKE  257 (276)
T ss_pred             ccceeecceEEEEEcCCCCccCCCcccHHHHHHHHHHHHHHHHHH
Confidence                          88877541  245579999999999998753

>PLN02901 1-acyl-sn-glycerol-3-phosphate acyltransferase

Probab=96.91  E-value=0.0026  Score=54.49  Aligned_cols=43  Identities=21%  Similarity=0.329  Sum_probs=29.2

Q ss_pred             eecCCCCcccHHHHHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354         11 INLGRNTRFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF   57 (218)
Q Consensus        11 ~~~g~~~~~sR~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F   57 (218)
                      +|++...  +..+.++.+.+.+.+ +..|+||||||.+++. .+..|
T Consensus       100 v~R~~~~--~~~~~~~~~~~~l~~-g~~v~IfPEGtr~~~~-~~~~f  142 (214)
T PLN02901        100 LKRMDRR--SQLECLKRCMELLKK-GASVFFFPEGTRSKDG-KLAAF  142 (214)
T ss_pred             EecCCcH--HHHHHHHHHHHHHhC-CCEEEEeCCCCCCCCC-cccCc
Confidence            6776433  444556666666653 4689999999977665 57777

>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []

Probab=96.38  E-value=0.0011  Score=50.76  Aligned_cols=36  Identities=31%  Similarity=0.515  Sum_probs=18.5

Q ss_pred             cHHHHHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354         20 SRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF   57 (218)
Q Consensus        20 sR~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F   57 (218)
                      ++..+++.+++.+..... |+|||||++++.. .++.|
T Consensus        76 ~~~~~~~~~~~~l~~~~~-i~ifPEG~~~~~~-~~~~~  111 (132)
T PF01553_consen   76 KNRKALKDIKEILRKGGS-IVIFPEGTRSRSG-ELLPF  111 (132)
T ss_dssp             HHHHHHHHHHHHHHC----EEE-TT-S---B---B---
T ss_pred             ccchhHHHHHHHhhhcce-eeecCCccCcCCC-ccCCc
Confidence            567777888887666555 9999999999997 55544

This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.

>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin

Probab=96.22  E-value=0.013  Score=40.33  Aligned_cols=40  Identities=20%  Similarity=0.341  Sum_probs=35.1

Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcC
Q psy15354        122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIAD  161 (218)
Q Consensus       122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~G  161 (218)
                      +.++.|++.+++.-+++.|++.|+++.=+|...++|||+.
T Consensus        10 edlI~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsR   49 (53)
T PF11547_consen   10 EDLINQAQVVLQGKSRNVIIRELQRTNLDVNLAVNNLLSR   49 (53)
T ss_dssp             HHHHHHHHHHSTTS-HHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHhcccHHHHHHHHhcc
Confidence            5689999999999999999999999778999999999973

Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.

>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like

Probab=96.13  E-value=0.0039  Score=52.14  Aligned_cols=39  Identities=18%  Similarity=0.228  Sum_probs=28.7

Q ss_pred             eecCCCCcccHHHHHHHHHHHhccCC-CCeEeccCcccccCc
Q psy15354         11 INLGRNTRFSRSTFLSKLKSFLCRTE-APIVLFPEEETTNGK   51 (218)
Q Consensus        11 ~~~g~~~~~sR~~~~~~ik~~~~~~~-~PlliFPEGt~TNg~   51 (218)
                      ++++...  +++.+.+.++......+ ..|+||||||..+..
T Consensus        80 v~R~~~~--d~~~i~~~~~~l~~~~~~~~lviFPEGTr~~~~  119 (193)
T cd07990          80 LKRKWEK--DEKTIKRQLKRLKDSPEPFWLLIFPEGTRFTEE  119 (193)
T ss_pred             EECChHH--hHHHHHHHHHHHhcCCCCcEEEEeCcccCCCHH
Confidence            7887654  77766666666655544 689999999988776

Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.

>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168

Probab=96.11  E-value=0.011  Score=48.71  Aligned_cols=36  Identities=14%  Similarity=0.239  Sum_probs=24.7

Q ss_pred             eecCCCCcccHHHHHHHHHHHhccCC-CCeEeccCcccccCc
Q psy15354         11 INLGRNTRFSRSTFLSKLKSFLCRTE-APIVLFPEEETTNGK   51 (218)
Q Consensus        11 ~~~g~~~~~sR~~~~~~ik~~~~~~~-~PlliFPEGt~TNg~   51 (218)
                      +|++.     ....++.+.+.+...+ ..|+||||||.+...
T Consensus        74 V~r~~-----~~~~~~~~~~~l~~g~~~~l~IFPEGtR~~~~  110 (163)
T cd07988          74 VDRSR-----AGGLVEQVVEEFRRREEFVLAIAPEGTRSKVD  110 (163)
T ss_pred             eEcCC-----cccHHHHHHHHHHhCCCcEEEEeCCCCCCCCc
Confidence            56653     2345666666666544 689999999988853

Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.

>cd07993 LPLAT_DHAPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like

Probab=96.07  E-value=0.0075  Score=51.13  Aligned_cols=46  Identities=17%  Similarity=0.225  Sum_probs=30.4

Q ss_pred             ceecCCCC-cccHHHHHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354         10 LINLGRNT-RFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF   57 (218)
Q Consensus        10 ~~~~g~~~-~~sR~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F   57 (218)
                      +++|+... ...++.+.+.+++.+.. +..|+||||||.|.+. .+++|
T Consensus        75 ~I~R~~~~~~~~~~~~~~~~~~~l~~-g~~l~iFPEGtrs~~g-~~~~~  121 (205)
T cd07993          75 FIRRSFGKDPLYRAVLQEYVQELLKN-GQPLEFFIEGTRSRTG-KLLPP  121 (205)
T ss_pred             EEecCCCccHHHHHHHHHHHHHHHhC-CceEEEEcCCCCCCCC-Cccch
Confidence            48887542 00133444556666554 6899999999998877 57766

Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.

>smart00563 PlsC Phosphate acyltransferases

Probab=95.62  E-value=0.015  Score=42.95  Aligned_cols=43  Identities=21%  Similarity=0.284  Sum_probs=27.6

Q ss_pred             eecCCCCcccHHHHHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354         11 INLGRNTRFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF   57 (218)
Q Consensus        11 ~~~g~~~~~sR~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F   57 (218)
                      ++++...  +..+.++++.+.+. .+.+|++||||+++++. .+++|
T Consensus        53 v~~~~~~--~~~~~~~~~~~~l~-~~~~~~ifPeG~~~~~~-~~~~~   95 (118)
T smart00563       53 IDRENGR--LARAALREAVRLLR-DGGWLLIFPEGTRSRPG-KLLPF   95 (118)
T ss_pred             EeCCCcH--HHHHHHHHHHHHHh-CCCEEEEeCCcccCCCC-CcCCC
Confidence            4554322  33444444444433 35789999999999998 77766

Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.

>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like

Probab=95.26  E-value=0.032  Score=46.98  Aligned_cols=34  Identities=21%  Similarity=0.329  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354         22 STFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF   57 (218)
Q Consensus        22 ~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F   57 (218)
                      ..+++.+.+.+.+ +.+|+||||||.+.+. .+.+|
T Consensus        97 ~~~~~~~~~~l~~-G~~l~IFPEGtr~~~~-~~~~f  130 (203)
T cd07992          97 AAVFDAVGEALKA-GGAIGIFPEGGSHDRP-RLLPL  130 (203)
T ss_pred             HHHHHHHHHHHhC-CCEEEEeCCCCCCCCC-CccCc
Confidence            5667778888764 5689999999988765 56666

Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.

>KOG2898|consensus

Probab=95.14  E-value=0.00056  Score=63.98  Aligned_cols=89  Identities=9%  Similarity=-0.044  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHhCCCCccCCC-HHHHHHHHHHHHHHHhhc--------CCCCCCCchHHHHHHHHHHHhCCCCCHHHHH
Q psy15354         71 DLMSRIEACIACEGRLSPTLCT-PSEKYELEKRLVRALATQ--------NSGARRYDSRMYAEAQRIREIFPNIPLNAIV  141 (218)
Q Consensus        71 ~FA~rV~~~iA~~Lgi~~t~~t-~~dk~e~~kr~~~~~~~~--------~~~~~~~~~~~~~m~~~V~~~fP~v~~~~I~  141 (218)
                      .|..+++...++...+  ..++ ..++.+..+++...+..+        +++..+...++..|+..+..++|.+....|+
T Consensus       213 ~ii~fpegtCinn~~~--~~fk~k~~~e~~~~i~pvaik~~~~~~~~f~~s~~~s~~~~l~~~~ts~~~v~~i~~l~~~~  290 (354)
T KOG2898|consen  213 PILLFPEGTCINNTKV--MQFKLKGSFEEGVKIYPVAIKYDPRFGDAFWNSPELSFTRYLLELMTSWAIVCDIWYLPPMR  290 (354)
T ss_pred             cEEEeecceeeCCcee--EEEecCCChhhcceeeeeeeecCccccccccCCccccHHHHHHHHHhhhheeeeeeecccEE
Confidence            3333333333333333  3344 778888888776665432        2455688899999999999999999999999


Q ss_pred             HHHhhccCCHHHHHHHHhcCC
Q psy15354        142 RELGRSHGNAELTISRLIADS  162 (218)
Q Consensus       142 ~DL~~~t~sv~~T~~~iL~Gr  162 (218)
                      +|+.. |+...+++-+.+.|+
T Consensus       291 r~~~e-t~t~~a~~v~~~ig~  310 (354)
T KOG2898|consen  291 RDNDE-TATQFANRVKSLIGK  310 (354)
T ss_pred             eeccc-chhHHHHHHHHHHHH
Confidence            99999 999999999999997

>PTZ00261 acyltransferase; Provisional

Probab=95.00  E-value=0.032  Score=52.36  Aligned_cols=35  Identities=17%  Similarity=0.325  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHhccCCCCeEeccCccccc-Cccccccc
Q psy15354         21 RSTFLSKLKSFLCRTEAPIVLFPEEETTN-GKKGLLKF   57 (218)
Q Consensus        21 R~~~~~~ik~~~~~~~~PlliFPEGt~TN-g~~~Ll~F   57 (218)
                      ++.+.+.+++.+.+ +..|+||||||-+- |. .|..|
T Consensus       201 ~~~v~~~~~e~Lk~-G~sLvIFPEGTRS~~gg-~L~pF  236 (355)
T PTZ00261        201 QAQVQQAIDAHLRL-GGSLAFFPEGAINKHPQ-VLQTF  236 (355)
T ss_pred             HHHHHHHHHHHHHC-CCEEEEECCcCCcCCCC-cCCCC
Confidence            33445555555554 46999999999866 44 58888

>cd06551 LPLAT Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis

Probab=94.82  E-value=0.12  Score=41.90  Aligned_cols=38  Identities=26%  Similarity=0.402  Sum_probs=28.6

Q ss_pred             cHHHHHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354         20 SRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF   57 (218)
Q Consensus        20 sR~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F   57 (218)
                      +....++.+.+.+.+.+.+|+|||||+++++...+.+|
T Consensus        85 ~~~~~~~~~~~~l~~~g~~v~ifPeG~~~~~~~~~~~~  122 (187)
T cd06551          85 SAAKSLKYVARLLSKPGSVVWIFPEGTRTRRDKRPLQF  122 (187)
T ss_pred             hHHHHHHHHHHHHhcCCcEEEEeCCcccCCCCCCcccc
Confidence            35677888888877656899999999988765345556

Lysophospholipid acyltransferase (LPLAT) superfamily members are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis. These proteins catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this superfamily are LPLATs such as glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB), 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), lysophosphatidylcholine acyltransferase 1 (LPCAT-1), lysophosphatidylethanolamine acyltransferase (LPEAT, also known as, MBOAT2, membrane-bound O-acyltransferase domain-containing protein 2), lipid A biosynthesis lauroyl/myristoyl acyltransferase, 2-acylglycerol O-acyltransferase (MGAT), dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-p

>COG0204 PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]

Probab=94.44  E-value=0.046  Score=46.21  Aligned_cols=35  Identities=29%  Similarity=0.409  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354         23 TFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF   57 (218)
Q Consensus        23 ~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F   57 (218)
                      .++......+...+..|+||||||.+++...+.+|
T Consensus       125 ~~~~~~~~~~~~~g~~l~iFPEGtr~~~~~~~~~~  159 (255)
T COG0204         125 ETLRAAVARLKAGGRSLVIFPEGTRSRGGEELLPF  159 (255)
T ss_pred             HHHHHHHHHHHhCCcEEEECCCcCcCCCccccCCC
Confidence            44444445545557789999999999963146655

>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases

Probab=93.98  E-value=0.064  Score=40.79  Aligned_cols=43  Identities=26%  Similarity=0.363  Sum_probs=28.7

Q ss_pred             eecCCCCcccHHHHHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354         11 INLGRNTRFSRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF   57 (218)
Q Consensus        11 ~~~g~~~~~sR~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F   57 (218)
                      ++++...  +...+++.+.+.+.+. .+|+|||||++.+.. .+++|
T Consensus        67 i~r~~~~--~~~~~~~~~~~~l~~g-~~v~ifPeG~~~~~~-~~~~f  109 (130)
T TIGR00530        67 IDRENIR--AIATALKAAIEVLKQG-RSIGVFPEGTRSRGR-DILPF  109 (130)
T ss_pred             ecCCChH--HHHHHHHHHHHHHhCC-CEEEEeCCCCCCCCC-CCCCc
Confidence            4554322  4556677777776544 589999999998776 55544

1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.

>PLN02380 1-acyl-sn-glycerol-3-phosphate acyltransferase

Probab=93.51  E-value=0.059  Score=50.84  Aligned_cols=43  Identities=12%  Similarity=-0.093  Sum_probs=28.1

Q ss_pred             ccccc--eecCCCCcccHHHHHHHHHHHhccCC--CCeEeccCcccccCc
Q psy15354          6 ECLGL--INLGRNTRFSRSTFLSKLKSFLCRTE--APIVLFPEEETTNGK   51 (218)
Q Consensus         6 ~~~g~--~~~g~~~~~sR~~~~~~ik~~~~~~~--~PlliFPEGt~TNg~   51 (218)
                      |..||  +||+...  +++ .+++..+.+.+..  ..|+||||||-....
T Consensus       133 ~~~~~IfIdR~~~~--d~~-~l~~~~~~l~~~~~~~wllIFPEGTR~~~~  179 (376)
T PLN02380        133 WFSEYVFLERSWAK--DEN-TLKSGFQRLKDFPRPFWLALFVEGTRFTQA  179 (376)
T ss_pred             HHcCCEEecCCchh--HHH-HHHHHHHHHhhCCCccEEEEecCcCCCCch
Confidence            45565  7887654  544 4444445555443  469999999988777

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=93.34  E-value=0.18  Score=49.80  Aligned_cols=32  Identities=28%  Similarity=0.483  Sum_probs=22.6

Q ss_pred             HHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354         24 FLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF   57 (218)
Q Consensus        24 ~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F   57 (218)
                      .++.+.+.+. .+.+|+||||||.+.+. .+.+|
T Consensus        86 ~~~~~~~~l~-~g~~~~iFPEGtr~~~~-~~~~~  117 (718)
T PRK08043         86 AIKHLVRLVE-QGRPVVIFPEGRITVTG-SLMKI  117 (718)
T ss_pred             HHHHHHHHHh-CCCEEEEeCCCccCCCC-CccCc
Confidence            3445544444 45799999999987666 68888

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=92.47  E-value=0.33  Score=49.77  Aligned_cols=36  Identities=22%  Similarity=0.300  Sum_probs=29.0

Q ss_pred             cHHHHHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354         20 SRSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF   57 (218)
Q Consensus        20 sR~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F   57 (218)
                      +..+.++.+++.+.+. ..|+||||||.+.+. .+.+|
T Consensus       496 ~~~~~~~~~~~~l~~g-~~~~ifPeGt~~~~~-~~~~~  531 (1146)
T PRK08633        496 GSKESLEFIRKALDDG-EVVCIFPEGAITRNG-QLNEF  531 (1146)
T ss_pred             ChHHHHHHHHHHHhCC-CEEEEECCcCCCCCC-Cccch
Confidence            5667788888776654 589999999999887 68888

>PLN02510 probable 1-acyl-sn-glycerol-3-phosphate acyltransferase

Probab=92.41  E-value=0.15  Score=48.15  Aligned_cols=65  Identities=15%  Similarity=0.095  Sum_probs=36.5

Q ss_pred             ccccc--eecCCCCcccHHHHHHHHHHHhccCC-CCeEeccCcccccCccccccccccccCCCCCCHHHHHHHHHHHHHH
Q psy15354          6 ECLGL--INLGRNTRFSRSTFLSKLKSFLCRTE-APIVLFPEEETTNGKKGLLKFLPVMKRAQNETDEDLMSRIEACIAC   82 (218)
Q Consensus         6 ~~~g~--~~~g~~~~~sR~~~~~~ik~~~~~~~-~PlliFPEGt~TNg~~~Ll~FLP~~~~~~~E~~~~FA~rV~~~iA~   82 (218)
                      |+.||  ++|+...  +++.+.+.++...+..+ ..|+||||||-+.-. -..               .     ...+|.
T Consensus       141 ~~~g~I~v~R~~~~--D~~~l~~~l~~lk~~~~~~~LvIFPEGTR~t~~-~~~---------------~-----s~~~A~  197 (374)
T PLN02510        141 HIFEFIPVERKWEV--DEPNIRQMLSSFKDPRDPLWLALFPEGTDYTEA-KCQ---------------R-----SQKFAA  197 (374)
T ss_pred             HHcCCeeeeCCccc--cHHHHHHHHHHHhccCCCcEEEEeCCcCCCCcc-ccc---------------h-----HHHHHH
Confidence            35566  6766433  55444444444433233 469999999965433 011               1     136777


Q ss_pred             hCCCCccCCCH
Q psy15354         83 EGRLSPTLCTP   93 (218)
Q Consensus        83 ~Lgi~~t~~t~   93 (218)
                      +.|++...+-.
T Consensus       198 k~glPil~~vL  208 (374)
T PLN02510        198 EHGLPILNNVL  208 (374)
T ss_pred             HcCCCcceeEE
Confidence            88888765543

>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924

Probab=92.28  E-value=0.22  Score=42.35  Aligned_cols=35  Identities=11%  Similarity=0.200  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHhccCCCCeEeccCcccccCc-----cccccc
Q psy15354         22 STFLSKLKSFLCRTEAPIVLFPEEETTNGK-----KGLLKF   57 (218)
Q Consensus        22 ~~~~~~ik~~~~~~~~PlliFPEGt~TNg~-----~~Ll~F   57 (218)
                      .+.++++.+.+.. +..|+||||||.+...     ..+..|
T Consensus        85 ~~~~~~~~~~L~~-G~~l~IFPEGtrs~~~~~~g~~~~~~f  124 (210)
T cd07986          85 RESLREALRHLKN-GGALIIFPAGRVSTASPPFGRVSDRPW  124 (210)
T ss_pred             HHHHHHHHHHHhC-CCEEEEECCcccccccccCCccccCCc
Confidence            3456677777764 4599999999988643     125677

Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.

>KOG1505|consensus

Probab=91.79  E-value=0.15  Score=47.73  Aligned_cols=38  Identities=21%  Similarity=0.234  Sum_probs=27.5

Q ss_pred             ccccc--eecCCCCcccHHHHHHHHHHHhccCC--CCeEeccCcc
Q psy15354          6 ECLGL--INLGRNTRFSRSTFLSKLKSFLCRTE--APIVLFPEEE   46 (218)
Q Consensus         6 ~~~g~--~~~g~~~~~sR~~~~~~ik~~~~~~~--~PlliFPEGt   46 (218)
                      |..||  ++|+-..  ++ +.+.++.++..+..  .-|+||||||
T Consensus       120 ~~~~fiFl~R~~~~--d~-~~l~~~~k~l~~~~~~~wLlLFPEGT  161 (346)
T KOG1505|consen  120 WFHGFIFLERNWEK--DE-KTLISLLKHLKDSPDPYWLLLFPEGT  161 (346)
T ss_pred             eecceEEEecchhh--hH-HHHHHHHHHhccCCCceEEEEecCCC
Confidence            44566  8888765  55 66677777766665  4699999998

>KOG4666|consensus

Probab=90.48  E-value=0.078  Score=49.72  Aligned_cols=64  Identities=22%  Similarity=0.184  Sum_probs=51.9

Q ss_pred             CeEeccCcccccCccccccc--------------------------------------------------cccccCC--C
Q psy15354         38 PIVLFPEEETTNGKKGLLKF--------------------------------------------------LPVMKRA--Q   65 (218)
Q Consensus        38 PlliFPEGt~TNg~~~Ll~F--------------------------------------------------LP~~~~~--~   65 (218)
                      -..+||||+++||. ...-|                                                  +|++.++  +
T Consensus       264 ~f~LFde~~tg~~D-~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~lf~~i~q  342 (412)
T KOG4666|consen  264 TFMLFDEGTTGNGD-YRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPVLFPSIEQ  342 (412)
T ss_pred             hhheecCCCCCccc-HHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccccchhhhc
Confidence            37999999999999 77777                                                  7777776  3


Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCccCCCHHHHHHHHHH
Q psy15354         66 NETDEDLMSRIEACIACEGRLSPTLCTPSEKYELEKR  102 (218)
Q Consensus        66 ~E~~~~FA~rV~~~iA~~Lgi~~t~~t~~dk~e~~kr  102 (218)
                      ++++..++.++++.+|..-++-.+..+|-||..|.-.
T Consensus       343 ~d~~ki~~~~f~~fa~~~p~~a~~~~~yld~~~~H~~  379 (412)
T KOG4666|consen  343 KDDPKIYASNFRKFAATEPNLALSELGYLDKRIYHAT  379 (412)
T ss_pred             ccCcceeHHHHHHHHHhCchhhhhhhccccchheeee
Confidence            5677799999999999988888888888887766543

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=90.18  E-value=1  Score=28.35  Aligned_cols=35  Identities=20%  Similarity=0.288  Sum_probs=30.7

Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHH
Q psy15354        122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRL  158 (218)
Q Consensus       122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~i  158 (218)
                      +.+++++.+|  .++.+..+..|..+.|+|+..++.|
T Consensus         3 ~~~v~~L~~m--Gf~~~~~~~AL~~~~~nve~A~~~L   37 (37)
T PF00627_consen    3 EEKVQQLMEM--GFSREQAREALRACNGNVERAVDWL   37 (37)
T ss_dssp             HHHHHHHHHH--TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred             HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence            4678999999  8999999999999999999999864

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>PRK14014 putative acyltransferase; Provisional

Probab=89.19  E-value=0.42  Score=43.50  Aligned_cols=12  Identities=33%  Similarity=0.296  Sum_probs=10.2

Q ss_pred             CCeEeccCcccc
Q psy15354         37 APIVLFPEEETT   48 (218)
Q Consensus        37 ~PlliFPEGt~T   48 (218)
                      ..|+||||||-.
T Consensus       175 ~~l~IFPEGTR~  186 (301)
T PRK14014        175 TTIVNFVEGTRF  186 (301)
T ss_pred             cEEEEeccceec
Confidence            579999999874

>KOG3037|consensus

Probab=82.19  E-value=1.1  Score=41.61  Aligned_cols=46  Identities=26%  Similarity=0.561  Sum_probs=35.0

Q ss_pred             CeEeccCc-------ccccCccccccc-------cccccCCCCCCHHHHHHHHHHHHHHh
Q psy15354         38 PIVLFPEE-------ETTNGKKGLLKF-------LPVMKRAQNETDEDLMSRIEACIACE   83 (218)
Q Consensus        38 PlliFPEG-------t~TNg~~~Ll~F-------LP~~~~~~~E~~~~FA~rV~~~iA~~   83 (218)
                      =++|||+.       .|+.|++++|||       +==|.-...+.+.+||.+|-..||+-
T Consensus        63 DlIifPde~eF~kV~qC~tGRVY~LKFkSs~~r~FFWMQE~~~d~D~e~c~rvNelln~p  122 (330)
T KOG3037|consen   63 DLIVFPDEAEFKKVDQCKTGRVYVLKFKSSDQRLFFWMQEPSDDNDKELCSRVNELLNKP  122 (330)
T ss_pred             ceEEccCceeEEECCCCCCCcEEEEEecCCCeeEEEEeecCCCCcCHHHHHHHHHHHcCC
Confidence            49999987       599999999999       10111112566789999999999986

>smart00165 UBA Ubiquitin associated domain

Probab=80.66  E-value=5.1  Score=24.67  Aligned_cols=35  Identities=17%  Similarity=0.338  Sum_probs=30.2

Q ss_pred             HHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHh
Q psy15354        123 AEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLI  159 (218)
Q Consensus       123 ~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL  159 (218)
                      ..++++.+|  -++.+.++.-|..+.|+++..++.|+
T Consensus         3 ~~v~~L~~m--Gf~~~~a~~aL~~~~~d~~~A~~~L~   37 (37)
T smart00165        3 EKIDQLLEM--GFSREEALKALRAANGNVERAAEYLL   37 (37)
T ss_pred             HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence            456778888  69999999999999999999998775

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>cd07989 LPLAT_AGPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like

Probab=80.38  E-value=2.4  Score=34.17  Aligned_cols=35  Identities=26%  Similarity=0.364  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354         21 RSTFLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF   57 (218)
Q Consensus        21 R~~~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F   57 (218)
                      ....++.+.+.+.+. ..+++||||+.+++. ..+.|
T Consensus        83 ~~~~~~~~~~~l~~g-~~l~i~peg~~~~~~-~~~~~  117 (184)
T cd07989          83 AREALREAIEALKEG-ESVVIFPEGTRSRDG-ELLPF  117 (184)
T ss_pred             HHHHHHHHHHHHHCC-CEEEEecCcccCCCC-CcCCC
Confidence            467777787776544 589999999999885 55544

Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=80.16  E-value=1.1  Score=46.38  Aligned_cols=32  Identities=25%  Similarity=0.295  Sum_probs=24.0

Q ss_pred             HHHHHHHHhccCCCCeEeccCcccccCccccccc
Q psy15354         24 FLSKLKSFLCRTEAPIVLFPEEETTNGKKGLLKF   57 (218)
Q Consensus        24 ~~~~ik~~~~~~~~PlliFPEGt~TNg~~~Ll~F   57 (218)
                      .++.+.+.++ ++..|+||||||.+.+. .+.+|
T Consensus       512 ~~~~~~~~l~-~g~~~~ifPeGtr~~~~-~~~~f  543 (1140)
T PRK06814        512 ATRTLIKEVQ-KGEKLVIFPEGRITVTG-SLMKI  543 (1140)
T ss_pred             HHHHHHHHHH-CCCEEEEeCCCCCCCCC-Ccccc
Confidence            3444555553 34699999999999888 79999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
2ejs_A	58	Autocrine motility factor receptor, isoform 2; CUE	3e-07
2ekf_A	61	Ancient ubiquitous protein 1; CUE, ubiquitin ligas	1e-06
4g3o_A	58	E3 ubiquitin-protein ligase AMFR; all-helical stru	2e-06

>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 45.2 bits (107), Expect = 3e-07
 Identities = 11/42 (26%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 118 DSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLI 159
           +S++ A A +I+E+FP +P + ++++L  +  + E+T   ++
Sbjct: 10  NSQLNAMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNIL 50

>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61

 Score = 43.7 bits (103), Expect = 1e-06
 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 112 SGARRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLI 159
             +   D ++   AQR++E+ P++PL  I R+L ++ G  +LTI+ L+
Sbjct: 4   GSSGSPDVQLATLAQRVKEVLPHVPLGVIQRDLAKT-GCVDLTITNLL 50

>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens} Length = 58

 Score = 43.0 bits (101), Expect = 2e-06
 Identities = 11/54 (20%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 106 ALATQNSGARRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLI 159
           ++  + S    +  ++ A A +I+E+FP +P + ++++L  +  + E+T   ++
Sbjct: 2   SMGYRGSENLYFQGQLNAMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNIL 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	218
2ekf_A	61	Ancient ubiquitous protein 1; CUE, ubiquitin ligas	99.82
2ejs_A	58	Autocrine motility factor receptor, isoform 2; CUE	99.79
4g3o_A	58	E3 ubiquitin-protein ligase AMFR; all-helical stru	99.77
3h8k_B	28	Autocrine motility factor receptor, isoform 2; alp	99.07
2dhy_A	67	CUE domain-containing protein 1; structural genomi	98.48
2di0_A	71	Activating signal cointegrator 1 complex subunit 2	97.92
1wgl_A	59	TOLL-interacting protein; CUE domain, structural g	97.76
1otr_A	49	Protein CUE2; protein-protein complex, cell cycle;	97.63
1p3q_Q	54	VPS9P, vacuolar protein sorting-associated protein	97.41
2qho_B	53	E3 ubiquitin-protein ligase EDD1; protein-protein	96.52
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	93.79
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	92.59
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	92.39
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	92.04
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	91.3
1wj7_A	104	Hypothetical protein (RSGI RUH-015); UBA domain, u	90.02
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	89.09
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	88.82
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	88.45
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	88.26
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	87.09
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	86.72
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	85.81
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	84.33
2dae_A	75	KIAA0733 protein; mitogen-activated protein kinase	84.2
2r2y_A	153	Protein ADRM1; proteasome, ubiquitin, PH-domain, 1	81.37
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	80.96
2dna_A	67	Unnamed protein product; ubiquitin associated doma	80.59

>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=1.9e-20  Score=132.35  Aligned_cols=52  Identities=33%  Similarity=0.614  Sum_probs=48.7

Q ss_pred             CCCchHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC-CCCCC
Q psy15354        115 RRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS-SFQNL  167 (218)
Q Consensus       115 ~~~~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr-~f~p~  167 (218)
                      ...++|+++||++|++||||||++.|+|||++ ||||++||||||+|+ +|.|.
T Consensus         7 ~~~~~ql~~mv~~V~~mfP~vp~~~I~~DL~~-TgsVe~TienILeGr~~~~p~   59 (61)
T 2ekf_A            7 GSPDVQLATLAQRVKEVLPHVPLGVIQRDLAK-TGCVDLTITNLLEGAVAFMPE   59 (61)
T ss_dssp             CCCCCCHHHHHHHHHHHCSSSCHHHHHHHHHT-SCCHHHHHHHHHSCCCCCCCC
T ss_pred             CCccHHHHHHHHHHHHHcCCCCHHHHHHHHHH-hCCHHHHHHHHHcCCCCCCCC
Confidence            45789999999999999999999999999999 999999999999999 77775

>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=1.4e-19  Score=126.75  Aligned_cols=47  Identities=23%  Similarity=0.505  Sum_probs=45.2

Q ss_pred             CCCchHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354        115 RRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS  162 (218)
Q Consensus       115 ~~~~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr  162 (218)
                      ...++|+++||++|++||||||++.|+|||++ ||||++||||||+|+
T Consensus         7 ~~~~~q~~~mv~~V~~mfP~vp~~~I~~DL~~-TgsVe~TienILeGr   53 (58)
T 2ejs_A            7 GASNSQLNAMAHQIQEMFPQVPYHLVLQDLQL-TRSVEITTDNILEGR   53 (58)
T ss_dssp             SCCCCHHHHHHHHHHHHCCSSCHHHHHHHHHH-HCSHHHHHHHHHHTC
T ss_pred             CcchHHHHHHHHHHHHHcCCCCHHHHHHHHHH-hCCHHHHHHHHHhcC
Confidence            35789999999999999999999999999999 999999999999999

>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}

Probab=99.77  E-value=2.7e-19  Score=125.16  Aligned_cols=44  Identities=23%  Similarity=0.542  Sum_probs=42.6

Q ss_pred             chHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354        118 DSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS  162 (218)
Q Consensus       118 ~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr  162 (218)
                      ++|+++||++|++||||||.++|+|||++ ||||++||||||+|+
T Consensus        14 ~sql~~Mve~V~~mFPqv~~~~I~~DL~r-TgSVe~TienILeGr   57 (58)
T 4g3o_A           14 QGQLNAMAHQIQEMFPQVPYHLVLQDLQL-TRSVEITTDNILEGR   57 (58)
T ss_dssp             HHHHHHHHHHHHHHCTTSCHHHHHHHHHH-HCCHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHH-hCCHHHHHHHHHccc
Confidence            56999999999999999999999999999 899999999999997

>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C

Probab=99.07  E-value=1.1e-10  Score=70.54  Aligned_cols=26  Identities=23%  Similarity=0.456  Sum_probs=25.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15354        192 SPHNRMSAFAEKKAQFIAEARRRAAT  217 (218)
Q Consensus       192 s~~eRq~sLqeRK~~MI~~ARrRyl~  217 (218)
                      |++|||.+||+||++||++||+||++
T Consensus         2 s~~eRq~~Lq~Rk~~mi~~ARrryl~   27 (28)
T 3h8k_B            2 SADERQRMLVQRKDELLQQARKRFLN   27 (28)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            78999999999999999999999996

>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=1.6e-07  Score=67.32  Aligned_cols=46  Identities=20%  Similarity=0.333  Sum_probs=41.7

Q ss_pred             CchHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354        117 YDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS  162 (218)
Q Consensus       117 ~~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr  162 (218)
                      ....+...++++++|||+|....|.+.|+.+.|+|+.||+.||+-.
T Consensus        14 ~~~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms   59 (67)
T 2dhy_A           14 RRLEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMN   59 (67)
T ss_dssp             CCCCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence            4455788999999999999999999999999999999999999743

>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=97.92  E-value=2.6e-05  Score=56.35  Aligned_cols=48  Identities=13%  Similarity=0.256  Sum_probs=45.4

Q ss_pred             CCCchHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354        115 RRYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS  162 (218)
Q Consensus       115 ~~~~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr  162 (218)
                      ..+...++.++.||+++||++...-|..=|....+|||.+|+.|||+.
T Consensus         7 ~~~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~   54 (71)
T 2di0_A            7 GMCGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEER   54 (71)
T ss_dssp             CCSSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred             CCcHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccC
Confidence            457889999999999999999999999999998999999999999996

>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=97.76  E-value=5.1e-05  Score=52.81  Aligned_cols=42  Identities=24%  Similarity=0.419  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354        121 MYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS  162 (218)
Q Consensus       121 ~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr  162 (218)
                      .+..++++++|||++....|..=|..+.|+||.||+.+|+-.
T Consensus         9 ~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~   50 (59)
T 1wgl_A            9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMG   50 (59)
T ss_dssp             CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSS
T ss_pred             CHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCc
Confidence            456789999999999999999999999999999999999975

>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4

Probab=97.63  E-value=6.4e-05  Score=50.64  Aligned_cols=41  Identities=20%  Similarity=0.361  Sum_probs=38.1

Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354        122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS  162 (218)
Q Consensus       122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr  162 (218)
                      +.-+.+++||||.++...|.+=|..+.|+++.+|+-||++.
T Consensus         5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~   45 (49)
T 1otr_A            5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEN   45 (49)
T ss_dssp             HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence            56788999999999999999999999999999999999873

>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A

Probab=97.41  E-value=6.5e-05  Score=51.63  Aligned_cols=41  Identities=10%  Similarity=0.165  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhc
Q psy15354        120 RMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIA  160 (218)
Q Consensus       120 ~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~  160 (218)
                      +....++++++|||++..+.|..=|..|.|++++||+.+|+
T Consensus        11 e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq   51 (54)
T 1p3q_Q           11 ERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS   51 (54)
T ss_dssp             HHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred             HHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            46678899999999999999999999999999999999985

>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}

Probab=96.52  E-value=0.0056  Score=41.26  Aligned_cols=40  Identities=18%  Similarity=0.316  Sum_probs=36.7

Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcC
Q psy15354        122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIAD  161 (218)
Q Consensus       122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~G  161 (218)
                      +.++.|++.+++.-|++.|++.|+++.=+|...++|||+.
T Consensus        10 e~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsR   49 (53)
T 2qho_B           10 EELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSR   49 (53)
T ss_dssp             HHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcc
Confidence            4688999999999999999999999777999999999975

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=93.79  E-value=0.17  Score=33.76  Aligned_cols=45  Identities=16%  Similarity=0.276  Sum_probs=39.9

Q ss_pred             CCchHHHHHHHHHHHhCCCC-CHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354        116 RYDSRMYAEAQRIREIFPNI-PLNAIVRELGRSHGNAELTISRLIADS  162 (218)
Q Consensus       116 ~~~~~~~~m~~~V~~~fP~v-~~~~I~~DL~~~t~sv~~T~~~iL~Gr  162 (218)
                      ....+.+..++++.+|  -+ +.+.++..|..+.|+|+.+++.|+++.
T Consensus         6 ~pe~~~~~~l~~L~~M--GF~~~~~~~~AL~~t~gnve~Ave~L~~~~   51 (53)
T 2knz_A            6 MPEVRFQQQLEQLNSM--GFINREANLQALIATGGDINAAIERLLGSQ   51 (53)
T ss_dssp             CTHHHHHHHHHHHHTT--TCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred             ChhhHHHHHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence            4567788999999999  47 899999999999999999999999874

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=92.59  E-value=0.26  Score=32.74  Aligned_cols=43  Identities=16%  Similarity=0.295  Sum_probs=37.7

Q ss_pred             CchHHHHHHHHHHHhCCCC-CHHHHHHHHhhccCCHHHHHHHHhcC
Q psy15354        117 YDSRMYAEAQRIREIFPNI-PLNAIVRELGRSHGNAELTISRLIAD  161 (218)
Q Consensus       117 ~~~~~~~m~~~V~~~fP~v-~~~~I~~DL~~~t~sv~~T~~~iL~G  161 (218)
                      ...+.+..++++.+|  -+ +.+.++..|..+.|+|+..++.|+.+
T Consensus         8 p~~~~~~~l~~L~~M--GF~~~~~~~~AL~~t~gn~e~A~e~L~~~   51 (52)
T 2jy5_A            8 PEVRFQQQLEQLSAM--GFLNREANLQALIATGGDINAAIERLLGS   51 (52)
T ss_dssp             TTTTTHHHHHHHHHT--TCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             chhHHHHHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            455678889999999  57 99999999999889999999999975

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=92.39  E-value=0.35  Score=33.49  Aligned_cols=39  Identities=18%  Similarity=0.212  Sum_probs=34.9

Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354        122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS  162 (218)
Q Consensus       122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr  162 (218)
                      +..++++.+|  -++.+..+..|..+.++|+..++.|+++.
T Consensus        10 ~~~I~~L~~M--GF~~~~a~~AL~~~~~nve~A~e~L~~~~   48 (63)
T 1wji_A           10 EKALKHITEM--GFSKEASRQALMDNGNNLEAALNVLLTSN   48 (63)
T ss_dssp             HHHHHHHHTT--TCCHHHHHHHHHHTTSCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence            4567888888  68999999999998899999999999987

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=92.04  E-value=0.39  Score=31.46  Aligned_cols=44  Identities=16%  Similarity=0.129  Sum_probs=39.4

Q ss_pred             CchHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354        117 YDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS  162 (218)
Q Consensus       117 ~~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr  162 (218)
                      .++..+..+.++.+|  -++.+.++..|..+.|+|+..++.|++|.
T Consensus         4 ~~~~~~~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~e~L~~gi   47 (49)
T 1ify_A            4 TGSEYETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLTGI   47 (49)
T ss_dssp             CSHHHHHHHHHHHHT--TCCHHHHHHHHHTTTSCSHHHHHHHHHCC
T ss_pred             CCccCHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence            456778889999999  58999999999998899999999999984

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=91.30  E-value=0.42  Score=31.06  Aligned_cols=41  Identities=17%  Similarity=0.335  Sum_probs=34.9

Q ss_pred             hHHHHHHHHHHHhCCCC-CHHHHHHHHhhccCCHHHHHHHHhcC
Q psy15354        119 SRMYAEAQRIREIFPNI-PLNAIVRELGRSHGNAELTISRLIAD  161 (218)
Q Consensus       119 ~~~~~m~~~V~~~fP~v-~~~~I~~DL~~~t~sv~~T~~~iL~G  161 (218)
                      .+.+..++++.+|  -+ ....++..|..+.|+|+..++.|++|
T Consensus         5 ~~~~~~i~~L~~M--GF~d~~~~~~AL~~~~gnv~~Ave~L~~~   46 (46)
T 2bwb_A            5 ERYEHQLRQLNDM--GFFDFDRNVAALRRSGGSVQGALDSLLNG   46 (46)
T ss_dssp             HHTHHHHHHHHHT--TCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence            4567788999999  45 56778999999999999999999986

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1

Probab=90.02  E-value=0.73  Score=35.29  Aligned_cols=44  Identities=16%  Similarity=0.277  Sum_probs=41.2

Q ss_pred             chHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354        118 DSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS  162 (218)
Q Consensus       118 ~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr  162 (218)
                      ++.++..|.+|.+| -.++.+.++..|..+.++++.+|+.||+|.
T Consensus        36 d~d~eekVk~L~Em-tG~seeeAr~AL~~~ngDl~~AI~~Lleg~   79 (104)
T 1wj7_A           36 DADFEEKVKQLIDI-TGKNQDECVIALHDCNGDVNRAINVLLEGN   79 (104)
T ss_dssp             CHHHHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred             cccHHHHHHHHHHh-hCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence            56789999999999 679999999999999999999999999998

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=89.09  E-value=0.59  Score=33.45  Aligned_cols=45  Identities=9%  Similarity=0.141  Sum_probs=40.4

Q ss_pred             CCchHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354        116 RYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS  162 (218)
Q Consensus       116 ~~~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr  162 (218)
                      ..+...+..|+++.+|  -++.+.++..|..+.++|+..++.||+|.
T Consensus        24 ~~~~~~ee~I~~L~eM--GF~r~~a~~AL~~~~~nve~Ave~Ll~~~   68 (73)
T 1vg5_A           24 GRVAASEEQIQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMSQS   68 (73)
T ss_dssp             CCSCCCHHHHHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred             cCCcccHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence            4566778899999999  59999999999998899999999999986

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=88.82  E-value=0.78  Score=27.96  Aligned_cols=38  Identities=11%  Similarity=0.233  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHh
Q psy15354        120 RMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLI  159 (218)
Q Consensus       120 ~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL  159 (218)
                      +.+..++++.+|  .++.+..+.-|..+.|+++..++.|+
T Consensus         3 ~~~~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~L~   40 (40)
T 1z96_A            3 GLNSKIAQLVSM--GFDPLEAAQALDAANGDLDVAASFLL   40 (40)
T ss_dssp             CHHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred             hHHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence            456788999999  89999999999998889999998874

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=88.45  E-value=0.75  Score=33.01  Aligned_cols=44  Identities=18%  Similarity=0.316  Sum_probs=37.9

Q ss_pred             CchHHHHHHHHHHHhCCCC-CHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354        117 YDSRMYAEAQRIREIFPNI-PLNAIVRELGRSHGNAELTISRLIADS  162 (218)
Q Consensus       117 ~~~~~~~m~~~V~~~fP~v-~~~~I~~DL~~~t~sv~~T~~~iL~Gr  162 (218)
                      ...+.+..++++.+|  -+ .+..++..|..+.|+|+..|+.|+.|-
T Consensus        25 pe~~ye~qi~qL~eM--GF~dr~~~~~AL~~t~Gnve~Ave~L~~~~   69 (74)
T 1vej_A           25 TEGRYQQELEELKAL--GFANRDANLQALVATDGDIHAAIEMLLGAS   69 (74)
T ss_dssp             TTTTSHHHHHHHHHH--TCCCHHHHHHHHHHTTSCHHHHHHHHHTCC
T ss_pred             chHHHHHHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence            455678889999999  35 678999999999999999999999984

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=88.26  E-value=0.9  Score=31.01  Aligned_cols=43  Identities=16%  Similarity=0.316  Sum_probs=36.8

Q ss_pred             CchHHHHHHHHHHHhCCCC-CHHHHHHHHhhccCCHHHHHHHHhcC
Q psy15354        117 YDSRMYAEAQRIREIFPNI-PLNAIVRELGRSHGNAELTISRLIAD  161 (218)
Q Consensus       117 ~~~~~~~m~~~V~~~fP~v-~~~~I~~DL~~~t~sv~~T~~~iL~G  161 (218)
                      ...+.+..++++.+|  -+ ....++..|..+.|+|+..++.|+.|
T Consensus        13 pe~~~~~qi~~L~~M--GF~d~~~~~~AL~~~~gnve~Ave~L~~~   56 (58)
T 1wr1_B           13 PEERYEHQLRQLNDM--GFFDFDRNVAALRRSGGSVQGALDSLLNG   56 (58)
T ss_dssp             HHHHTHHHHHHHHHH--TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            355678889999999  34 57788999999999999999999987

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=87.09  E-value=0.83  Score=30.63  Aligned_cols=42  Identities=14%  Similarity=0.285  Sum_probs=34.6

Q ss_pred             hHHHHHHHHHHHhCCCCC-HHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354        119 SRMYAEAQRIREIFPNIP-LNAIVRELGRSHGNAELTISRLIADS  162 (218)
Q Consensus       119 ~~~~~m~~~V~~~fP~v~-~~~I~~DL~~~t~sv~~T~~~iL~Gr  162 (218)
                      .+.+..++++++|  -++ ....+..|..+.|+|+..|+.|+.+.
T Consensus         7 ~~~~~~l~~L~~M--GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~   49 (54)
T 2dah_A            7 GHFQVQLEQLRSM--GFLNREANLQALIATGGDVDAAVEKLRQSS   49 (54)
T ss_dssp             CSSHHHHHHHHHH--TCCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHc--CCCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence            3457778999999  464 45679999999999999999999874

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=86.72  E-value=1.4  Score=27.63  Aligned_cols=38  Identities=8%  Similarity=0.106  Sum_probs=33.8

Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcC
Q psy15354        122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIAD  161 (218)
Q Consensus       122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~G  161 (218)
                      +..++++.+|  -+|.+..+..|..+.++++..++.|++|
T Consensus         5 e~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~L~~~   42 (43)
T 2g3q_A            5 SLAVEELSGM--GFTEEEAHNALEKCNWDLEAATNFLLDS   42 (43)
T ss_dssp             HHHHHHHHTT--TSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             HHHHHHHHHc--CCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence            4568888898  5899999999999888999999999987

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.81  E-value=3.6  Score=29.08  Aligned_cols=39  Identities=13%  Similarity=0.230  Sum_probs=33.2

Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHhhccC-CHHHHHHHHhcCC
Q psy15354        122 YAEAQRIREIFPNIPLNAIVRELGRSHG-NAELTISRLIADS  162 (218)
Q Consensus       122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~-sv~~T~~~iL~Gr  162 (218)
                      ..+++++.+|  -++....++.|..+.| +|+..++-||++.
T Consensus        10 e~~v~~L~~M--GF~~~~a~~AL~~t~n~~ve~A~ewL~~~~   49 (74)
T 2dag_A           10 ESVIIQLVEM--GFPMDACRKAVYYTGNSGAEAAMNWVMSHM   49 (74)
T ss_dssp             HHHHHHHHHH--SCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence            4567888888  6889999999999554 6999999999987

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.33  E-value=2  Score=29.29  Aligned_cols=39  Identities=8%  Similarity=0.144  Sum_probs=34.4

Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354        122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS  162 (218)
Q Consensus       122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr  162 (218)
                      +..+.++.+|  -++....+..|..+.++|+..++.|+++.
T Consensus        10 ~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~A~e~L~~~~   48 (63)
T 2dak_A           10 EDCVTTIVSM--GFSRDQALKALRATNNSLERAVDWIFSHI   48 (63)
T ss_dssp             HHHHHHHHHH--TCCHHHHHHHHHHTTSCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence            4577888888  57899999999998889999999999975

>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.20  E-value=1.6  Score=31.45  Aligned_cols=36  Identities=19%  Similarity=0.351  Sum_probs=32.3

Q ss_pred             HHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHH
Q psy15354        123 AEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRL  158 (218)
Q Consensus       123 ~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~i  158 (218)
                      .+.+.+++=||.||..+|-.=+..|.++.++-|.-+
T Consensus        12 qvfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L   47 (75)
T 2dae_A           12 QVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVL   47 (75)
T ss_dssp             HHHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHH
T ss_pred             HHHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHH
Confidence            578899999999999999999999999999987644

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=80.96  E-value=3.2  Score=29.33  Aligned_cols=39  Identities=13%  Similarity=0.187  Sum_probs=34.4

Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354        122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS  162 (218)
Q Consensus       122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr  162 (218)
                      ...+.++.+|  -++....+..|..+.|+|+..++.|+++.
T Consensus        30 ~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~Ave~L~~~~   68 (73)
T 1wiv_A           30 QSSVDTLLSF--GFAEDVARKALKASGGDIEKATDWVFNNS   68 (73)
T ss_dssp             HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred             HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence            4567888888  58999999999998999999999999875

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=80.59  E-value=3.5  Score=29.00  Aligned_cols=46  Identities=17%  Similarity=0.225  Sum_probs=38.3

Q ss_pred             CCchHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354        116 RYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS  162 (218)
Q Consensus       116 ~~~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr  162 (218)
                      ....++...++++++|= -......++.|..+.|+|+.+||.|+++.
T Consensus        14 ~pe~~y~~ql~qL~~MG-F~d~~an~~AL~at~Gnve~Ave~L~~~~   59 (67)
T 2dna_A           14 APEVRFSKEMECLQAMG-FVNYNANLQALIATDGDTNAAIYKLKSSQ   59 (67)
T ss_dssp             CHHHHTHHHHHHHHHHT-CCCHHHHHHHHHHTTSCHHHHHHHHHHCC
T ss_pred             ChHHHHHHHHHHHHHcC-CCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence            34566778888999884 25677889999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d1mn3a_	54	Vacuolar protein sorting-associated protein vps9 {	97.75
d1wgla_	59	Toll-interacting protein {Human (Homo sapiens) [Ta	97.69
d2di0a1	63	Activating signal cointegrator 1 complex subunit 2	97.43
d2bwba1	44	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	91.74
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	91.6
d2dnaa1	50	Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus	90.4
d1veja1	61	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	84.53
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	84.2
d2daha1	41	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	80.98

>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Vacuolar protein sorting-associated protein vps9
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.75  E-value=2.1e-05  Score=52.41  Aligned_cols=41  Identities=12%  Similarity=0.203  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhc
Q psy15354        120 RMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIA  160 (218)
Q Consensus       120 ~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~  160 (218)
                      +....++++++|||++..++|..=|.-|.|+|+.||+-+|+
T Consensus        11 e~~e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~aidaLL~   51 (54)
T d1mn3a_          11 ERKDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCVDALLS   51 (54)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            46778899999999999999999999999999999999985

>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Toll-interacting protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=2.7e-05  Score=52.75  Aligned_cols=40  Identities=25%  Similarity=0.474  Sum_probs=37.3

Q ss_pred             HHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354        123 AEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS  162 (218)
Q Consensus       123 ~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr  162 (218)
                      ..++++++|||++...+|..=|..+.|+|+.+|+-+|+=.
T Consensus        11 e~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL~Ms   50 (59)
T d1wgla_          11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMG   50 (59)
T ss_dssp             HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSS
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence            4588999999999999999999999999999999999854

>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Activating signal cointegrator 1 complex subunit 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00015  Score=49.53  Aligned_cols=45  Identities=13%  Similarity=0.296  Sum_probs=42.5

Q ss_pred             chHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354        118 DSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS  162 (218)
Q Consensus       118 ~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr  162 (218)
                      +.++++++.||+++||++...-|..=|..-.+|+|..|..||+|.
T Consensus         3 ~vel~s~I~qV~Dl~PdLG~GFi~~~L~~Y~~n~E~vI~~lLe~~   47 (63)
T d2di0a1           3 GVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEER   47 (63)
T ss_dssp             SHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHccC
Confidence            578999999999999999999999999997789999999999986

>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.74  E-value=0.18  Score=31.46  Aligned_cols=40  Identities=15%  Similarity=0.260  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcC
Q psy15354        121 MYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIAD  161 (218)
Q Consensus       121 ~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~G  161 (218)
                      .....+|.++| =-...+..+..|+.+.|+|++.|+.||.|
T Consensus         5 y~~QL~qL~~M-GF~d~~~Ni~AL~~t~GdV~~Aie~Ll~g   44 (44)
T d2bwba1           5 YEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG   44 (44)
T ss_dssp             THHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred             HHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHhCc
Confidence            34455677776 45678889999999999999999999987

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.60  E-value=0.23  Score=32.70  Aligned_cols=39  Identities=18%  Similarity=0.212  Sum_probs=35.5

Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354        122 YAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS  162 (218)
Q Consensus       122 ~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr  162 (218)
                      ..+++++-+|  -++.+..+..|..+.++|+..++-||++.
T Consensus        10 ~~~v~~L~~M--GF~~~~a~~AL~~~~~~~e~A~~wL~~~~   48 (63)
T d1wjia_          10 EKALKHITEM--GFSKEASRQALMDNGNNLEAALNVLLTSN   48 (63)
T ss_dssp             HHHHHHHHTT--TCCHHHHHHHHHHTTSCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence            5678888888  69999999999998889999999999997

>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-like protein Ubqlnl
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.40  E-value=0.3  Score=31.16  Aligned_cols=44  Identities=18%  Similarity=0.290  Sum_probs=36.1

Q ss_pred             chHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhcCC
Q psy15354        118 DSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIADS  162 (218)
Q Consensus       118 ~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~Gr  162 (218)
                      ..+.....++.++| =-...+..+..|..++|+|++.|+.||++.
T Consensus         5 e~ry~~QL~qL~~M-GF~d~~~Ni~AL~~t~GdV~~Aie~Ll~~~   48 (50)
T d2dnaa1           5 EVRFSKEMECLQAM-GFVNYNANLQALIATDGDTNAAIYKLKSSQ   48 (50)
T ss_dssp             HHHTHHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence            34556666777887 456788899999999999999999999875

>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.53  E-value=0.78  Score=30.25  Aligned_cols=44  Identities=16%  Similarity=0.225  Sum_probs=36.6

Q ss_pred             CCchHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhc
Q psy15354        116 RYDSRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIA  160 (218)
Q Consensus       116 ~~~~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~  160 (218)
                      ....+.....++.++| =-...+..+..|..+.|+|++.|+.||.
T Consensus        17 ~~e~ry~~QL~qL~eM-GF~d~~~Nl~AL~~t~Gdv~~Aie~Ll~   60 (61)
T d1veja1          17 FTEGRYQQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLG   60 (61)
T ss_dssp             GTTTTSHHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            3455678888899998 3457888899999999999999999984

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.20  E-value=0.41  Score=29.04  Aligned_cols=40  Identities=18%  Similarity=0.125  Sum_probs=35.7

Q ss_pred             hHHHHHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhc
Q psy15354        119 SRMYAEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIA  160 (218)
Q Consensus       119 ~~~~~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~  160 (218)
                      +.++.+|.++.+|=  ++.+..+..|..+.+||+..++.||+
T Consensus         2 ~~~e~~i~~L~~MG--F~~~~a~~AL~~~~~N~e~A~~~LlS   41 (41)
T d1oqya1           2 SEYETMLTEIMSMG--YERERVVAALRASYNNPHRAVEYLLT   41 (41)
T ss_dssp             TTHHHHHHHHHTTT--CCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred             hhHHHHHHHHHHcC--CCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence            45788999999985  89999999999999999999998874

>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.98  E-value=1.2  Score=26.99  Aligned_cols=37  Identities=14%  Similarity=0.274  Sum_probs=29.2

Q ss_pred             HHHHHHHHhCCCCCHHHHHHHHhhccCCHHHHHHHHhc
Q psy15354        123 AEAQRIREIFPNIPLNAIVRELGRSHGNAELTISRLIA  160 (218)
Q Consensus       123 ~m~~~V~~~fP~v~~~~I~~DL~~~t~sv~~T~~~iL~  160 (218)
                      +..++.++| --...+.....|....|+|+++||.||+
T Consensus         4 ~QL~~L~~M-GF~d~~~Ni~AL~~t~Gdv~~Aie~Ll~   40 (41)
T d2daha1           4 VQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQ   40 (41)
T ss_dssp             HHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            345666666 3456778888999999999999999985