Psyllid ID: psy15359

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
MSSVSEEKMTFPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHNCYNYSNPMLST
cccccccccccccccccHHHHHHccccccccccccccccccccHHHHHHHccccHHHHcccHHHHHHHHHcccccccccEEEEEccccccccccccEEEEEcccccccccccccHHHHHccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHccccccccc
cccccccccccccccccHHHHHHcccccccccEccccccccccHHHHHHHHcccHHHHHccHHHHHHHHHHHHHHcccccEEccccccHHHHHcccccEEEcccEEEcccccccHHHHHHcccHHHHHHHcHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHcccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHccHHHHHHHcHHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHccccEEcc
mssvseekmtfpplkndRLLRAargeevdkipIWIMRQAgrylpefrelrskhdffticqtpELAAEITlqpirrfnldasiifsdILVIPQALGmvvemkpavgpvlpeplvipedlkklktpvdVYKELNYVFEAITLTrhklegkvpligfsgapWTLMSYMIEgggsktmskskhwlykypeESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMnndvpmtifakgapkqghncynysnpmlst
mssvseekmtfpplkndrllraargeevdkipiwiMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITltrhklegkvplIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIfakgapkqghncynysnpmlst
MSSVSEEKMTFPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHNCYNYSNPMLST
***********************RGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKG*******CY*********
***************NDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHNCYNYSNPMLST
***********PPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHNCYNYSNPMLST
********MTFPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHNCYNYSNPMLST
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSVSEEKMTFPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTIFAKGAPKQGHNCYNYSNPMLST
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query281 2.2.26 [Sep-21-2011]
Q9V595356 Uroporphyrinogen decarbox yes N/A 0.928 0.733 0.646 9e-98
Q9PTS2369 Uroporphyrinogen decarbox yes N/A 0.896 0.682 0.664 1e-97
O18601386 Uroporphyrinogen decarbox N/A N/A 0.911 0.663 0.603 4e-92
Q8HY31367 Uroporphyrinogen decarbox N/A N/A 0.932 0.713 0.608 2e-91
P70697367 Uroporphyrinogen decarbox yes N/A 0.900 0.689 0.618 2e-90
P06132367 Uroporphyrinogen decarbox yes N/A 0.896 0.686 0.624 2e-90
Q5RDK5367 Uroporphyrinogen decarbox yes N/A 0.896 0.686 0.624 1e-89
Q54DF9364 Uroporphyrinogen decarbox yes N/A 0.925 0.714 0.583 1e-88
P32362364 Uroporphyrinogen decarbox yes N/A 0.900 0.695 0.606 5e-88
Q9USJ5355 Uroporphyrinogen decarbox yes N/A 0.893 0.707 0.598 4e-84
>sp|Q9V595|DCUP_DROME Uroporphyrinogen decarboxylase OS=Drosophila melanogaster GN=Updo PE=3 SV=1 Back     alignment and function desciption
 Score =  356 bits (914), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 172/266 (64%), Positives = 215/266 (80%), Gaps = 5/266 (1%)

Query: 11  FPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITL 70
           FP LKND LLRAARGE VD++P+W+MRQAGRYLPEF+ELR  HDFFT+C+TPELA E+T+
Sbjct: 7   FPVLKNDNLLRAARGEVVDRVPVWVMRQAGRYLPEFQELRKHHDFFTVCRTPELACEVTM 66

Query: 71  QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKE 130
           QP+RRF+LDASIIFSDILVIPQALG+ VEM   VGPVLP+P+V+PEDLK+L TP      
Sbjct: 67  QPLRRFDLDASIIFSDILVIPQALGLTVEMHAGVGPVLPQPIVVPEDLKRL-TPDGALSR 125

Query: 131 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 190
           L+YV +AIT+ RHKLEG+VPLIGF+GAPWTLM YMIEGGGSKTMSK+K WL ++PE+SK 
Sbjct: 126 LSYVGDAITMMRHKLEGRVPLIGFTGAPWTLMGYMIEGGGSKTMSKAKAWLNEHPEDSKL 185

Query: 191 LLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQL-K 249
            L +LT+ IVDYL  Q KAGAQ+LQ+FES+AE+L  + F ++ +PY+  I +++  +L K
Sbjct: 186 FLNLLTDAIVDYLEMQVKAGAQMLQVFESSAEHLSKEQFLQWCVPYLKRIRDELVDRLTK 245

Query: 250 QMNNDVPMTIFAKGAPKQGHNCYNYS 275
           +    VPMT+FAKGA   GH+    S
Sbjct: 246 KAIPVVPMTLFAKGA---GHSLKEQS 268
Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
Drosophila melanogaster (taxid: 7227)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7
>sp|Q9PTS2|DCUP_DANRE Uroporphyrinogen decarboxylase OS=Danio rerio GN=urod PE=2 SV=1 Back     alignment and function description
>sp|O18601|DCUP_DROVI Uroporphyrinogen decarboxylase OS=Drosophila virilis GN=Updo PE=3 SV=1 Back     alignment and function description
>sp|Q8HY31|DCUP_SHEEP Uroporphyrinogen decarboxylase OS=Ovis aries GN=UROD PE=1 SV=1 Back     alignment and function description
>sp|P70697|DCUP_MOUSE Uroporphyrinogen decarboxylase OS=Mus musculus GN=Urod PE=1 SV=2 Back     alignment and function description
>sp|P06132|DCUP_HUMAN Uroporphyrinogen decarboxylase OS=Homo sapiens GN=UROD PE=1 SV=2 Back     alignment and function description
>sp|Q5RDK5|DCUP_PONAB Uroporphyrinogen decarboxylase OS=Pongo abelii GN=UROD PE=2 SV=1 Back     alignment and function description
>sp|Q54DF9|DCUP_DICDI Uroporphyrinogen decarboxylase OS=Dictyostelium discoideum GN=hemE PE=1 SV=1 Back     alignment and function description
>sp|P32362|DCUP_RAT Uroporphyrinogen decarboxylase (Fragment) OS=Rattus norvegicus GN=Urod PE=1 SV=1 Back     alignment and function description
>sp|Q9USJ5|DCUP_SCHPO Uroporphyrinogen decarboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hem12 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query281
193697420349 PREDICTED: uroporphyrinogen decarboxylas 0.935 0.753 0.699 1e-108
345479548373 PREDICTED: uroporphyrinogen decarboxylas 0.914 0.689 0.713 1e-105
345479550360 PREDICTED: uroporphyrinogen decarboxylas 0.900 0.702 0.721 1e-105
321475414348 uroporphyrinogen decarboxylase [Daphnia 0.893 0.721 0.691 1e-102
242021862346 Uroporphyrinogen decarboxylase, putative 0.918 0.745 0.659 1e-100
332030423377 Uroporphyrinogen decarboxylase [Acromyrm 0.903 0.673 0.667 1e-100
307171917356 Uroporphyrinogen decarboxylase [Camponot 0.903 0.713 0.667 1e-99
307211421356 Uroporphyrinogen decarboxylase [Harpegna 0.900 0.710 0.662 1e-98
260813440368 hypothetical protein BRAFLDRAFT_224293 [ 0.896 0.684 0.687 1e-98
292397866356 uroporphyrinogen decarboxylase [Nylander 0.903 0.713 0.667 2e-98
>gi|193697420|ref|XP_001952264.1| PREDICTED: uroporphyrinogen decarboxylase-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/273 (69%), Positives = 229/273 (83%), Gaps = 10/273 (3%)

Query: 9   MTFPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEI 68
           M FP LKNDR+LRAARGEEVD+IP+W+MRQAGRYLPEFRELRS++DFFTIC+TPELA E+
Sbjct: 1   MNFPALKNDRILRAARGEEVDRIPVWVMRQAGRYLPEFRELRSRYDFFTICRTPELACEV 60

Query: 69  TLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVY 128
           TLQPI+R++LDASIIFSDILVI QALGM+VEM+P+VGPV+P+PL  P DL +L   +DV 
Sbjct: 61  TLQPIQRYDLDASIIFSDILVIVQALGMIVEMQPSVGPVIPDPLKEPIDLDRLNQSIDVK 120

Query: 129 KELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEES 188
           +EL YVFEAITLTRH+L G+VPLIGF+GAPWTLM YMIEGGGSKTMSK+K WLYKYPEES
Sbjct: 121 QELGYVFEAITLTRHRLNGQVPLIGFTGAPWTLMCYMIEGGGSKTMSKAKKWLYKYPEES 180

Query: 189 KKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQL 248
           KKLL+ILT++IV YL+ Q  AGAQ+LQ+FESNAEYL+ +LF  F+ PY++ I  +VK +L
Sbjct: 181 KKLLQILTDIIVKYLIEQVNAGAQMLQVFESNAEYLNSELFDRFSGPYLSAICSRVKNEL 240

Query: 249 KQMNNDVPMTIFAKGAPKQGHNCYNYSNPMLST 281
           K   N VPM +FAKG    GH    Y+   LST
Sbjct: 241 K--GNSVPMVVFAKG----GH----YAMKQLST 263

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|345479548|ref|XP_003423974.1| PREDICTED: uroporphyrinogen decarboxylase-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|345479550|ref|XP_001607401.2| PREDICTED: uroporphyrinogen decarboxylase-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|321475414|gb|EFX86377.1| uroporphyrinogen decarboxylase [Daphnia pulex] Back     alignment and taxonomy information
>gi|242021862|ref|XP_002431362.1| Uroporphyrinogen decarboxylase, putative [Pediculus humanus corporis] gi|212516630|gb|EEB18624.1| Uroporphyrinogen decarboxylase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|332030423|gb|EGI70111.1| Uroporphyrinogen decarboxylase [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307171917|gb|EFN63554.1| Uroporphyrinogen decarboxylase [Camponotus floridanus] Back     alignment and taxonomy information
>gi|307211421|gb|EFN87548.1| Uroporphyrinogen decarboxylase [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|260813440|ref|XP_002601426.1| hypothetical protein BRAFLDRAFT_224293 [Branchiostoma floridae] gi|229286721|gb|EEN57438.1| hypothetical protein BRAFLDRAFT_224293 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|292397866|gb|ADE27973.1| uroporphyrinogen decarboxylase [Nylanderia nr. pubens LZ-2010] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query281
FB|FBgn0033428356 Updo "Updo" [Drosophila melano 0.911 0.719 0.655 1.1e-89
ZFIN|ZDB-GENE-000208-18402 urod "uroporphyrinogen decarbo 0.896 0.626 0.660 4.7e-87
UNIPROTKB|F1NBI2368 UROD "Uroporphyrinogen decarbo 0.903 0.690 0.662 2e-86
UNIPROTKB|E1BEX4367 UROD "Uncharacterized protein" 0.932 0.713 0.608 1.2e-81
UNIPROTKB|F1S365367 UROD "Uncharacterized protein" 0.896 0.686 0.624 2.5e-81
UNIPROTKB|P06132367 UROD "Uroporphyrinogen decarbo 0.896 0.686 0.624 5.2e-81
DICTYBASE|DDB_G0292294364 hemE "uroporphyrinogen decarbo 0.925 0.714 0.583 8.5e-81
MGI|MGI:98916367 Urod "uroporphyrinogen decarbo 0.896 0.686 0.620 1.1e-80
UNIPROTKB|E2RCH3367 UROD "Uncharacterized protein" 0.896 0.686 0.608 1.2e-79
RGD|3946364 Urod "uroporphyrinogen decarbo 0.896 0.692 0.608 6.8e-79
FB|FBgn0033428 Updo "Updo" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
 Identities = 171/261 (65%), Positives = 214/261 (81%)

Query:    11 FPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITL 70
             FP LKND LLRAARGE VD++P+W+MRQAGRYLPEF+ELR  HDFFT+C+TPELA E+T+
Sbjct:     7 FPVLKNDNLLRAARGEVVDRVPVWVMRQAGRYLPEFQELRKHHDFFTVCRTPELACEVTM 66

Query:    71 QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKE 130
             QP+RRF+LDASIIFSDILVIPQALG+ VEM   VGPVLP+P+V+PEDLK+L TP      
Sbjct:    67 QPLRRFDLDASIIFSDILVIPQALGLTVEMHAGVGPVLPQPIVVPEDLKRL-TPDGALSR 125

Query:   131 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 190
             L+YV +AIT+ RHKLEG+VPLIGF+GAPWTLM YMIEGGGSKTMSK+K WL ++PE+SK 
Sbjct:   126 LSYVGDAITMMRHKLEGRVPLIGFTGAPWTLMGYMIEGGGSKTMSKAKAWLNEHPEDSKL 185

Query:   191 LLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQL-K 249
              L +LT+ IVDYL  Q KAGAQ+LQ+FES+AE+L  + F ++ +PY+  I +++  +L K
Sbjct:   186 FLNLLTDAIVDYLEMQVKAGAQMLQVFESSAEHLSKEQFLQWCVPYLKRIRDELVDRLTK 245

Query:   250 QMNNDVPMTIFAKGAPKQGHN 270
             +    VPMT+FAKGA   GH+
Sbjct:   246 KAIPVVPMTLFAKGA---GHS 263
GO:0006783 "heme biosynthetic process" evidence=NAS
GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA;NAS
GO:0005737 "cytoplasm" evidence=NAS
GO:0004853 "uroporphyrinogen decarboxylase activity" evidence=ISS
ZFIN|ZDB-GENE-000208-18 urod "uroporphyrinogen decarboxylase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBI2 UROD "Uroporphyrinogen decarboxylase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BEX4 UROD "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S365 UROD "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P06132 UROD "Uroporphyrinogen decarboxylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292294 hemE "uroporphyrinogen decarboxylase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:98916 Urod "uroporphyrinogen decarboxylase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RCH3 UROD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|3946 Urod "uroporphyrinogen decarboxylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A6GVN8DCUP_FLAPJ4, ., 1, ., 1, ., 3, 70.48600.86470.7126yesN/A
Q9V595DCUP_DROME4, ., 1, ., 1, ., 3, 70.64660.92880.7331yesN/A
Q2S1W0DCUP_SALRD4, ., 1, ., 1, ., 3, 70.54900.88960.7062yesN/A
Q54DF9DCUP_DICDI4, ., 1, ., 1, ., 3, 70.58330.92520.7142yesN/A
Q3AUB7DCUP_CHLCH4, ., 1, ., 1, ., 3, 70.44170.86830.6951yesN/A
Q3B1E7DCUP_PELLD4, ., 1, ., 1, ., 3, 70.47380.86830.6951yesN/A
A4SGN6DCUP_PROVI4, ., 1, ., 1, ., 3, 70.48590.86830.6951yesN/A
Q31JF4DCUP_THICR4, ., 1, ., 1, ., 3, 70.44840.88250.7005yesN/A
Q1QA45DCUP_PSYCK4, ., 1, ., 1, ., 3, 70.45880.88610.6587yesN/A
B4S3W2DCUP_PROA24, ., 1, ., 1, ., 3, 70.48590.86830.6951yesN/A
B7I451DCUP_ACIB54, ., 1, ., 1, ., 3, 70.43490.91810.7226yesN/A
Q4FRK8DCUP_PSYA24, ., 1, ., 1, ., 3, 70.46090.88960.6613yesN/A
B4EYT8DCUP_PROMH4, ., 1, ., 1, ., 3, 70.45660.88960.7002yesN/A
B7GZK6DCUP_ACIB34, ., 1, ., 1, ., 3, 70.43490.91810.7226yesN/A
B4SGD6DCUP_PELPB4, ., 1, ., 1, ., 3, 70.45380.86830.6951yesN/A
Q5RDK5DCUP_PONAB4, ., 1, ., 1, ., 3, 70.62450.89670.6866yesN/A
P70697DCUP_MOUSE4, ., 1, ., 1, ., 3, 70.61810.90030.6893yesN/A
P06132DCUP_HUMAN4, ., 1, ., 1, ., 3, 70.62450.89670.6866yesN/A
Q5QVW3DCUP_IDILO4, ., 1, ., 1, ., 3, 70.45130.88610.6955yesN/A
Q4UX89DCUP_XANC84, ., 1, ., 1, ., 3, 70.44220.87900.6977yesN/A
B0VBT2DCUP_ACIBY4, ., 1, ., 1, ., 3, 70.43490.91810.7226yesN/A
Q3J6U6DCUP_NITOC4, ., 1, ., 1, ., 3, 70.48410.88250.6946yesN/A
A3M795DCUP_ACIBT4, ., 1, ., 1, ., 3, 70.43490.91810.7226yesN/A
C5BRJ3DCUP_TERTT4, ., 1, ., 1, ., 3, 70.45090.88610.7033yesN/A
Q11X05DCUP_CYTH34, ., 1, ., 1, ., 3, 70.47800.85760.7005yesN/A
B3EHV5DCUP_CHLL24, ., 1, ., 1, ., 3, 70.47380.86830.6951yesN/A
A1WVX2DCUP_HALHL4, ., 1, ., 1, ., 3, 70.44740.90030.6950yesN/A
Q8KAW2DCUP_CHLTE4, ., 1, ., 1, ., 3, 70.46980.86830.6951yesN/A
A1BCW4DCUP_CHLPD4, ., 1, ., 1, ., 3, 70.47380.86830.6951yesN/A
Q9PTS2DCUP_DANRE4, ., 1, ., 1, ., 3, 70.66400.89670.6829yesN/A
Q8P6X1DCUP_XANCP4, ., 1, ., 1, ., 3, 70.44220.87900.6977yesN/A
B2HVF8DCUP_ACIBC4, ., 1, ., 1, ., 3, 70.45270.88960.7002yesN/A
B6J229DCUP_COXB24, ., 1, ., 1, ., 3, 70.47030.87900.6842yesN/A
B3QXB5DCUP_CHLT34, ., 1, ., 1, ., 3, 70.51390.87540.6968yesN/A
A5FLE7DCUP_FLAJ14, ., 1, ., 1, ., 3, 70.47010.86470.7126yesN/A
A5WFU9DCUP_PSYWF4, ., 1, ., 1, ., 3, 70.45070.91810.7010yesN/A
B0VUQ9DCUP_ACIBS4, ., 1, ., 1, ., 3, 70.43860.91810.7226yesN/A
B3EL29DCUP_CHLPB4, ., 1, ., 1, ., 3, 70.47790.86830.6951yesN/A
P32362DCUP_RAT4, ., 1, ., 1, ., 3, 70.60620.90030.6950yesN/A
A0M6C4DCUP_GRAFK4, ., 1, ., 1, ., 3, 70.47010.86470.7126yesN/A
Q9USJ5DCUP_SCHPO4, ., 1, ., 1, ., 3, 70.59840.89320.7070yesN/A
P32347DCUP_YEAST4, ., 1, ., 1, ., 3, 70.54610.90740.7044yesN/A
Q83EP0DCUP_COXBU4, ., 1, ., 1, ., 3, 70.47030.87900.6842yesN/A
B0RQC7DCUP_XANCB4, ., 1, ., 1, ., 3, 70.44220.87900.6977yesN/A
Q2NWR2DCUP_SODGM4, ., 1, ., 1, ., 3, 70.45230.88250.7005yesN/A
B3QL69DCUP_CHLP84, ., 1, ., 1, ., 3, 70.48190.86830.6951yesN/A
A9NB09DCUP_COXBR4, ., 1, ., 1, ., 3, 70.47030.87900.6842yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.1.1.370.914
3rd Layer4.1.10.921

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query281
cd00717335 cd00717, URO-D, Uroporphyrinogen decarboxylase (UR 1e-143
TIGR01464338 TIGR01464, hemE, uroporphyrinogen decarboxylase 1e-127
PRK00115346 PRK00115, hemE, uroporphyrinogen decarboxylase; Va 1e-121
pfam01208338 pfam01208, URO-D, Uroporphyrinogen decarboxylase ( 1e-109
COG0407352 COG0407, HemE, Uroporphyrinogen-III decarboxylase 1e-105
PLN02433345 PLN02433, PLN02433, uroporphyrinogen decarboxylase 5e-97
cd03465330 cd03465, URO-D_like, The URO-D _like protein super 9e-37
cd00465306 cd00465, URO-D_CIMS_like, The URO-D_CIMS_like prot 7e-35
PRK06252339 PRK06252, PRK06252, methylcobalamin:coenzyme M met 1e-18
cd03307326 cd03307, Mta_CmuA_like, MtaA_CmuA_like family 1e-17
TIGR01463340 TIGR01463, mtaA_cmuA, methyltransferase, MtaA/CmuA 2e-15
>gnl|CDD|238368 cd00717, URO-D, Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors Back     alignment and domain information 
 Score =  404 bits (1041), Expect = e-143
 Identities = 137/245 (55%), Positives = 178/245 (72%), Gaps = 5/245 (2%)

Query: 20  LRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLD 79
           LRA RGE VD+ P+W MRQAGRYLPE+RELR+K+ F  +C+ PELAAE+TLQP+RRF +D
Sbjct: 1   LRALRGEPVDRPPVWFMRQAGRYLPEYRELRAKYSFLELCKNPELAAEVTLQPVRRFGVD 60

Query: 80  ASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAIT 139
           A+IIFSDILV  +A+GM VE     GPV+P P+    D+ +L  P D  +EL+YV+EAI 
Sbjct: 61  AAIIFSDILVPLEAMGMDVEFVEGKGPVIPNPIRTEADVDRLLVP-DPEEELSYVYEAIK 119

Query: 140 LTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVI 199
           LTR +L G+VPLIGF+GAPWTL SYMIEGGGSK  +K+K  +Y  PE    LL+ LT+  
Sbjct: 120 LTRKELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKKMMYTDPEAFHALLDKLTDAT 179

Query: 200 VDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQMNNDVPMTI 259
           ++YL  Q +AGAQ +Q+F+S A  L  + F+EF LPY+  I E+VK +L      VP+ +
Sbjct: 180 IEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRL----PGVPVIL 235

Query: 260 FAKGA 264
           FAKGA
Sbjct: 236 FAKGA 240

This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). Length = 335
>gnl|CDD|233423 TIGR01464, hemE, uroporphyrinogen decarboxylase Back     alignment and domain information
>gnl|CDD|234644 PRK00115, hemE, uroporphyrinogen decarboxylase; Validated Back     alignment and domain information
>gnl|CDD|216366 pfam01208, URO-D, Uroporphyrinogen decarboxylase (URO-D) Back     alignment and domain information
>gnl|CDD|223484 COG0407, HemE, Uroporphyrinogen-III decarboxylase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|215237 PLN02433, PLN02433, uroporphyrinogen decarboxylase Back     alignment and domain information
>gnl|CDD|239548 cd03465, URO-D_like, The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases Back     alignment and domain information
>gnl|CDD|238261 cd00465, URO-D_CIMS_like, The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases Back     alignment and domain information
>gnl|CDD|235753 PRK06252, PRK06252, methylcobalamin:coenzyme M methyltransferase; Validated Back     alignment and domain information
>gnl|CDD|239423 cd03307, Mta_CmuA_like, MtaA_CmuA_like family Back     alignment and domain information
>gnl|CDD|130530 TIGR01463, mtaA_cmuA, methyltransferase, MtaA/CmuA family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 281
PRK00115346 hemE uroporphyrinogen decarboxylase; Validated 100.0
PLN02433345 uroporphyrinogen decarboxylase 100.0
TIGR01464338 hemE uroporphyrinogen decarboxylase. This model re 100.0
cd00717335 URO-D Uroporphyrinogen decarboxylase (URO-D) is a 100.0
PF01208343 URO-D: Uroporphyrinogen decarboxylase (URO-D); Int 100.0
COG0407352 HemE Uroporphyrinogen-III decarboxylase [Coenzyme 100.0
TIGR01463340 mtaA_cmuA methyltransferase, MtaA/CmuA family. Thi 100.0
PRK06252339 methylcobalamin:coenzyme M methyltransferase; Vali 100.0
cd03307326 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, al 100.0
KOG2872|consensus359 100.0
cd03465330 URO-D_like The URO-D _like protein superfamily inc 100.0
cd03308378 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized pro 100.0
cd00465306 URO-D_CIMS_like The URO-D_CIMS_like protein superf 99.97
cd03309321 CmuC_like CmuC_like. Proteins similar to the putat 99.91
PRK04326330 methionine synthase; Provisional 99.23
cd03310321 CIMS_like CIMS - Cobalamine-independent methonine 98.95
PRK00957305 methionine synthase; Provisional 98.71
cd03311332 CIMS_C_terminal_like CIMS - Cobalamine-independent 98.32
PRK06233 372 hypothetical protein; Provisional 96.25
PRK01207 343 methionine synthase; Provisional 96.12
PRK08575326 5-methyltetrahydropteroyltriglutamate--homocystein 95.89
PRK09121 339 5-methyltetrahydropteroyltriglutamate--homocystein 95.88
PRK06520 368 5-methyltetrahydropteroyltriglutamate--homocystein 95.78
PRK06052 344 5-methyltetrahydropteroyltriglutamate--homocystein 95.7
cd03312360 CIMS_N_terminal_like CIMS - Cobalamine-independent 95.08
PLN02475 766 5-methyltetrahydropteroyltriglutamate--homocystein 94.81
TIGR01371750 met_syn_B12ind 5-methyltetrahydropteroyltriglutama 94.65
TIGR01371 750 met_syn_B12ind 5-methyltetrahydropteroyltriglutama 94.57
PLN02475766 5-methyltetrahydropteroyltriglutamate--homocystein 94.14
PRK05222758 5-methyltetrahydropteroyltriglutamate--homocystein 93.87
PF01717324 Meth_synt_2: Cobalamin-independent synthase, Catal 92.08
COG0620330 MetE Methionine synthase II (cobalamin-independent 91.82
PRK05222 758 5-methyltetrahydropteroyltriglutamate--homocystein 91.19
COG5016 472 Pyruvate/oxaloacetate carboxyltransferase [Energy 89.55
PRK12330 499 oxaloacetate decarboxylase; Provisional 87.12
cd07938274 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, 86.39
PF00682237 HMGL-like: HMGL-like of this family is not conserv 86.09
PRK05692287 hydroxymethylglutaryl-CoA lyase; Provisional 85.5
cd00951 289 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also 85.31
PRK12331 448 oxaloacetate decarboxylase; Provisional 84.51
cd07945280 DRE_TIM_CMS Leptospira interrogans citramalate syn 84.16
cd03174265 DRE_TIM_metallolyase DRE-TIM metallolyase superfam 83.32
cd07943263 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te 83.05
PRK14041 467 oxaloacetate decarboxylase; Provisional 82.97
PRK03620 303 5-dehydro-4-deoxyglucarate dehydratase; Provisiona 82.74
PRK12581 468 oxaloacetate decarboxylase; Provisional 82.37
COG0329 299 DapA Dihydrodipicolinate synthase/N-acetylneuramin 81.85
TIGR00674 285 dapA dihydrodipicolinate synthase. Dihydrodipicoli 81.71
PLN02801 517 beta-amylase 81.6
PRK14042 596 pyruvate carboxylase subunit B; Provisional 81.08
cd00952 309 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate 81.0
PRK03170 292 dihydrodipicolinate synthase; Provisional 80.81
cd07941273 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 80.77
TIGR01108 582 oadA oxaloacetate decarboxylase alpha subunit. Thi 80.12
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated Back     alignment and domain information 
Probab=100.00  E-value=2.1e-54  Score=393.53  Aligned_cols=263  Identities=45%  Similarity=0.791  Sum_probs=246.0

Q ss_pred             CCChHHHHHHHHcCCCCCccccccchhhhhchHHHHHHhcCC-ChhhhcCCHHHHHHHHHhHHHHcCCCeeeeccccccc
Q psy15359         12 PPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKH-DFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVI   90 (281)
Q Consensus        12 ~~~~~ERv~aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~~~-~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~~~d~~~~   90 (281)
                      |.+|+||++++++||++||||+++|.++|+|+++|+.++.|+ ++.|++.|++++++++++.+++||+|++++++|+.++
T Consensus         1 ~~~~~er~~~~~~g~~~driPv~~~~~~g~~~pe~~~~~~~~~~f~e~~~~~e~~ae~~~~~~~~~g~D~~~i~~d~~~~   80 (346)
T PRK00115          1 TELKNDRFLRALRGEPVDRTPVWMMRQAGRYLPEYRALRAKAGSFLELCKNPELAAEVTLQPVRRYGVDAAILFSDILTP   80 (346)
T ss_pred             CCcchhHHHHHHcCCCCCCCCeeehHhhccccHHHHHHHhccCcHHHHhCCHHHHHHHHHHHHHHhCCCeEEecccchhh
Confidence            456799999999999999999999999999999999999998 9999999999999999999999999999999999999


Q ss_pred             hhcCCCEEEecCCCCCcCCCCCCChHHHhcCCCCCCcccchHHHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCCC
Q psy15359         91 PQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGG  170 (281)
Q Consensus        91 ~ea~G~~~~~~~~~~p~~~~~i~~~eD~~~l~~~~d~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~~  170 (281)
                      +++||+++.|+++.+|.+.+++++++|+++++. ++++++++.++++++++++++++++|++++++||||+|++|++|++
T Consensus        81 ~ea~G~~i~~~~~~~P~~~~~i~~~~d~~~l~~-~~~~~~~~~~leai~~l~~~~~~~~~vig~v~gP~Tla~~l~~~~~  159 (346)
T PRK00115         81 PDAMGLDLDFEEGEGPVFDNPIRTEADVEKLPV-PDPEEDLPYVLEAVRLLRRELGGEVPLIGFAGAPWTLATYMVEGGG  159 (346)
T ss_pred             HHHcCCeeeeCCCCCCcCCCCcCCHHHHHhcCC-CCchhccHHHHHHHHHHHHHhCCCceEEeeCCcHHHHHHHHHcCCC
Confidence            999999999998888988778999999999987 7878899999999999999999999999999999999999998777


Q ss_pred             CCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhcc
Q psy15359        171 SKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQ  250 (281)
Q Consensus       171 ~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~~  250 (281)
                      ++++++++++++++||.+|++|+++++.+++|+++++++|+|+|+++|+++++|||++|+||++||+|+|++.+++..|+
T Consensus       160 ~~~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~  239 (346)
T PRK00115        160 SKDYAKTKAMMYAEPELLHALLDKLADATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPD  239 (346)
T ss_pred             CccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999986323


Q ss_pred             CCCCCcEEEEecCCcc-cchhhhcCCCCCCC
Q psy15359        251 MNNDVPMTIFAKGAPK-QGHNCYNYSNPMLS  280 (281)
Q Consensus       251 ~~~~~~~ilH~cG~~~-~~~~~~~~~~~~~~  280 (281)
                           ..++|+||++. .++++.+++.+.+|
T Consensus       240 -----~~ilh~cg~~~~~~~~~~~~~~~~is  265 (346)
T PRK00115        240 -----VPVILFGKGAGELLEAMAETGADVVG  265 (346)
T ss_pred             -----CCEEEEcCCcHHHHHHHHhcCCCEEe
Confidence                 35777777765 79999999988764

>PLN02433 uroporphyrinogen decarboxylase Back     alignment and domain information
>TIGR01464 hemE uroporphyrinogen decarboxylase Back     alignment and domain information
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors Back     alignment and domain information
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen [] Back     alignment and domain information
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism] Back     alignment and domain information
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family Back     alignment and domain information
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated Back     alignment and domain information
>cd03307 Mta_CmuA_like MtaA_CmuA_like family Back     alignment and domain information
>KOG2872|consensus Back     alignment and domain information
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases Back     alignment and domain information
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC Back     alignment and domain information
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases Back     alignment and domain information
>cd03309 CmuC_like CmuC_like Back     alignment and domain information
>PRK04326 methionine synthase; Provisional Back     alignment and domain information
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE Back     alignment and domain information
>PRK00957 methionine synthase; Provisional Back     alignment and domain information
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like Back     alignment and domain information
>PRK06233 hypothetical protein; Provisional Back     alignment and domain information
>PRK01207 methionine synthase; Provisional Back     alignment and domain information
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like Back     alignment and domain information
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Back     alignment and domain information
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase Back     alignment and domain information
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase Back     alignment and domain information
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Back     alignment and domain information
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional Back     alignment and domain information
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2 Back     alignment and domain information
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional Back     alignment and domain information
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] Back     alignment and domain information
>PRK12330 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain Back     alignment and domain information
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members Back     alignment and domain information
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional Back     alignment and domain information
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases Back     alignment and domain information
>PRK12331 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily Back     alignment and domain information
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>PRK14041 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional Back     alignment and domain information
>PRK12581 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR00674 dapA dihydrodipicolinate synthase Back     alignment and domain information
>PLN02801 beta-amylase Back     alignment and domain information
>PRK14042 pyruvate carboxylase subunit B; Provisional Back     alignment and domain information
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) Back     alignment and domain information
>PRK03170 dihydrodipicolinate synthase; Provisional Back     alignment and domain information
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query281
3gw3_A367 Human Urod Mutant K297n Length = 367 1e-91
3gw0_A367 Urod Mutant G318r Length = 367 2e-91
1uro_A367 Uroporphyrinogen Decarboxylase Length = 367 2e-91
3gvv_A367 Single-Chain Urod Y164g (Gy) Mutation Length = 367 4e-91
1r3w_A367 Uroporphyrinogen Decarboxylase Y164f Mutant In Comp 4e-91
1r3v_A367 Uroporphyrinogen Decarboxylase Single Mutant D86e I 5e-91
1jph_A388 Ile260thr Mutant Of Human Urod, Human Uroporphyrino 6e-91
1r3r_A367 Uroporphyrinogen Decarboxylase With Mutation D86n L 6e-91
1r3s_A367 Uroporphyrinogen Decarboxylase Single Mutant D86g I 9e-91
1jpi_A388 Phe232leu Mutant Of Human Urod, Human Uroporphyrino 1e-90
1jpk_A388 Gly156asp Mutant Of Human Urod, Human Uroporphyrino 2e-90
2q71_A356 Uroporphyrinogen Decarboxylase G168r Single Mutant 2e-90
3cyv_A354 Crystal Structure Of Uroporphyrinogen Decarboxylase 7e-57
4exq_A368 Crystal Structure Of Uroporphyrinogen Decarboxylase 1e-49
2eja_A338 Crystal Structure Of Uroporphyrinogen Decarboxylase 6e-48
2inf_A359 Crystal Structure Of Uroporphyrinogen Decarboxylase 5e-46
1j93_A353 Crystal Structure And Substrate Binding Modeling Of 3e-38
4ay7_A348 Methyltransferase From Methanosarcina Mazei Length 4e-09
4ay8_A348 Semet-Derivative Of A Methyltransferase From M. Maz 2e-08
>pdb|3GW3|A Chain A, Human Urod Mutant K297n Length = 367 Back     alignment and structure 
Iteration: 1

 Score =  332 bits (851), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 158/253 (62%), Positives = 194/253 (76%), Gaps = 1/253 (0%)
Query: 11  FPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITL 70
           FP LKND  LRAA GEE D  P+W MRQAGRYLPEFRE R+  DFF+ C++PE   E+TL
Sbjct: 11  FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTL 70
Query: 71  QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKE 130
           QP+RRF LDA+IIFSDILV+PQALGM V M P  GP  PEPL   +DL++L+ P  V  E
Sbjct: 71  QPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASE 130
Query: 131 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 190
           L YVF+AITLTR +L G+VPLIGF+GAPWTLM+YM+EGGGS TM+++K WLY+ P+ S +
Sbjct: 131 LGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQ 190
Query: 191 LLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQ 250
           LL ILT+ +V YLVGQ  AGAQ LQLFES+A +L   LF +FALPYI  + ++VKA+L++
Sbjct: 191 LLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE 250
Query: 251 MN-NDVPMTIFAK 262
                VPM IFAK
Sbjct: 251 AGLAPVPMIIFAK 263
>pdb|3GW0|A Chain A, Urod Mutant G318r Length = 367 Back     alignment and structure
>pdb|1URO|A Chain A, Uroporphyrinogen Decarboxylase Length = 367 Back     alignment and structure
>pdb|3GVV|A Chain A, Single-Chain Urod Y164g (Gy) Mutation Length = 367 Back     alignment and structure
>pdb|1R3W|A Chain A, Uroporphyrinogen Decarboxylase Y164f Mutant In Complex With Coproporphyrinogen-Iii Length = 367 Back     alignment and structure
>pdb|1R3V|A Chain A, Uroporphyrinogen Decarboxylase Single Mutant D86e In Complex With Coproporphyrinogen-I Length = 367 Back     alignment and structure
>pdb|1JPH|A Chain A, Ile260thr Mutant Of Human Urod, Human Uroporphyrinogen Iii Decarboxylase Length = 388 Back     alignment and structure
>pdb|1R3R|A Chain A, Uroporphyrinogen Decarboxylase With Mutation D86n Length = 367 Back     alignment and structure
>pdb|1R3S|A Chain A, Uroporphyrinogen Decarboxylase Single Mutant D86g In Complex With Coproporphyrinogen-I Length = 367 Back     alignment and structure
>pdb|1JPI|A Chain A, Phe232leu Mutant Of Human Urod, Human Uroporphyrinogen Iii Decarboxylase Length = 388 Back     alignment and structure
>pdb|1JPK|A Chain A, Gly156asp Mutant Of Human Urod, Human Uroporphyrinogen Iii Decarboxylase Length = 388 Back     alignment and structure
>pdb|2Q71|A Chain A, Uroporphyrinogen Decarboxylase G168r Single Mutant Enzyme In Complex With Coproporphyrinogen-Iii Length = 356 Back     alignment and structure
>pdb|3CYV|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From Shigella Flexineri: New Insights Into Its Catalytic Mechanism Length = 354 Back     alignment and structure
>pdb|4EXQ|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase (Upd) From Burkholderia Thailandensis E264 Length = 368 Back     alignment and structure
>pdb|2EJA|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From Aquifex Aeolicus Length = 338 Back     alignment and structure
>pdb|2INF|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From Bacillus Subtilis Length = 359 Back     alignment and structure
>pdb|1J93|A Chain A, Crystal Structure And Substrate Binding Modeling Of The Uroporphyrinogen-Iii Decarboxylase From Nicotiana Tabacum: Implications For The Catalytic Mechanism Length = 353 Back     alignment and structure
>pdb|4AY7|A Chain A, Methyltransferase From Methanosarcina Mazei Length = 348 Back     alignment and structure
>pdb|4AY8|A Chain A, Semet-Derivative Of A Methyltransferase From M. Mazei Length = 348 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query281
1r3s_A367 URO-D, uroporphyrinogen decarboxylase, UPD; uropor 1e-159
2inf_A359 URO-D, UPD, uroporphyrinogen decarboxylase; (alpha 1e-150
3cyv_A354 URO-D, UPD, uroporphyrinogen decarboxylase; alpha/ 1e-150
1j93_A353 UROD, uroporphyrinogen decarboxylase; beta barrel, 1e-148
4exq_A368 UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid 1e-147
2eja_A338 URO-D, UPD, uroporphyrinogen decarboxylase; dimer, 1e-138
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A* Length = 367 Back     alignment and structure
 Score =  447 bits (1153), Expect = e-159
 Identities = 158/265 (59%), Positives = 195/265 (73%), Gaps = 1/265 (0%)

Query: 1   MSSVSEEKMTFPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQ 60
           M +       FP LKND  LRAA GEE D  P+W MRQAGRYLPEFRE R+  DFF+ C+
Sbjct: 1   MEANGLGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 60

Query: 61  TPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKK 120
           +PE   E+TLQP+RRF LDA+IIFS ILV+PQALGM V M P  GP  PEPL   +DL++
Sbjct: 61  SPEACCELTLQPLRRFPLDAAIIFSGILVVPQALGMEVTMVPGKGPSFPEPLREEQDLER 120

Query: 121 LKTPVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHW 180
           L+ P  V  EL YVF+AITLTR +L G+VPLIGF+GAPWTLM+YM+EGGGS TM+++K W
Sbjct: 121 LRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRW 180

Query: 181 LYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTI 240
           LY+ P+ S +LL ILT+ +V YLVGQ  AGAQ LQLFES+A +L   LF +FALPYI  +
Sbjct: 181 LYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDV 240

Query: 241 NEKVKAQLKQMN-NDVPMTIFAKGA 264
            ++VKA+L++     VPM IFAK  
Sbjct: 241 AKQVKARLREAGLAPVPMIIFAKDG 265
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis} Length = 359 Back     alignment and structure
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri} Length = 354 Back     alignment and structure
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1 Length = 353 Back     alignment and structure
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis} Length = 368 Back     alignment and structure
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} Length = 338 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query281
4exq_A368 UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid 100.0
1r3s_A367 URO-D, uroporphyrinogen decarboxylase, UPD; uropor 100.0
3cyv_A354 URO-D, UPD, uroporphyrinogen decarboxylase; alpha/ 100.0
2eja_A338 URO-D, UPD, uroporphyrinogen decarboxylase; dimer, 100.0
2inf_A359 URO-D, UPD, uroporphyrinogen decarboxylase; (alpha 100.0
1j93_A353 UROD, uroporphyrinogen decarboxylase; beta barrel, 100.0
4ay7_A348 Methylcobalamin\: coenzyme M methyltransferase; TI 100.0
1u1j_A765 5-methyltetrahydropteroyltriglutamate-- homocystei 98.25
2nq5_A755 5-methyltetrahydropteroyltriglutamate-- homocystei 98.22
1ypx_A 375 Putative vitamin-B12 independent methionine synth 98.11
2nq5_A 755 5-methyltetrahydropteroyltriglutamate-- homocystei 97.77
1u1j_A 765 5-methyltetrahydropteroyltriglutamate-- homocystei 97.23
3rpd_A 357 Methionine synthase (B12-independent); structural 97.22
1t7l_A766 5-methyltetrahydropteroyltriglutamate-- homocystei 96.73
3ppg_A789 5-methyltetrahydropteroyltriglutamate--homocystei 94.99
4djd_D 323 C/Fe-SP, corrinoid/iron-sulfur protein small subun 84.05
2cw6_A298 Hydroxymethylglutaryl-COA lyase, mitochondrial; HM 82.52
2ftp_A302 Hydroxymethylglutaryl-COA lyase; structural genomi 81.48
3ble_A337 Citramalate synthase from leptospira interrogans; 80.66
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis} Back     alignment and structure
Probab=100.00  E-value=4.4e-58  Score=419.15  Aligned_cols=269  Identities=37%  Similarity=0.658  Sum_probs=249.5

Q ss_pred             cCCCCChHHHHHHHHcCCCCCccccccchhhhhchHHHHHHhcCC-ChhhhcCCHHHHHHHHHhHHHHcCCCeeeecccc
Q psy15359          9 MTFPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKH-DFFTICQTPELAAEITLQPIRRFNLDASIIFSDI   87 (281)
Q Consensus         9 ~~~~~~~~ERv~aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~~~-~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~~~d~   87 (281)
                      ..|+|+|+||+++|++||++||+|||+|.|||+|+++|+.++++. ++.++|.||++++|++++++++|++|++++++|+
T Consensus         4 ~~~~~~~~~r~l~al~ge~~dr~Pvw~mrqaGr~lpey~~~r~~~~~f~~~~~~pe~~ae~tl~~~~~~~~Da~i~fsDi   83 (368)
T 4exq_A            4 SMAQTLINDTFLRALLREPTDYTPIWLMRQAGRYLPEYNATRARAGSFLGLAKHPDYATEVTLQPLERFPLDAAILFSDI   83 (368)
T ss_dssp             CSSSCBSCCHHHHHHTTCCCSSCCBCCTTSSSTTSHHHHHHHHHHSSHHHHHHSHHHHHHHHHHHHHHSCCSCEECCCCT
T ss_pred             ccCCcccchHHHHHHcCCCCCCCCEEeeHhhhhccHHHHHHHhcCCCHHHHHcCHHHHHHHHHHHHHHhCCCEEEecccc
Confidence            358999999999999999999999999999999999999888887 9999999999999999999999999999999999


Q ss_pred             ccchhcCCCEEEecCCCCCcCCCCCCChHHHhcCCCCCCcccchHHHHHHHHHHHHHcCC-----CccEEEecCcHHHHH
Q psy15359         88 LVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKELNYVFEAITLTRHKLEG-----KVPLIGFSGAPWTLM  162 (281)
Q Consensus        88 ~~~~ea~G~~~~~~~~~~p~~~~~i~~~eD~~~l~~~~d~~~~~~~~~~~~~~l~~~~~~-----~~~i~~~~~gPf~~a  162 (281)
                      .++++|||+++.|+++.+|++.+||++.+|+++|+. ++++++++.++++++++++++++     ++|++++++||||++
T Consensus        84 ~~~~ea~G~~v~~~~~~gP~~~~pi~~~~d~~~l~~-~~~~~~l~~v~eai~~l~~~l~~~~~~~~vpligf~gaP~Tla  162 (368)
T 4exq_A           84 LTIPDAMGLGLDFAAGEGPKFAHPVRTEADVAKLAV-PDIGATLGYVTDAVREIRRALTDGEGRQRVPLIGFSGSPWTLA  162 (368)
T ss_dssp             THHHHHTTTCEEC----CCEESSCCCSHHHHHTCCC-CCHHHHSHHHHHHHHHHHHHTBCTTSCBSSCEEEEEECHHHHH
T ss_pred             chhHHHcCCeEEeCCCCCCCCCCCCCCHHHHHhccC-CChhHHHHHHHHHHHHHHHHhCCcCcccceeEEEeCCcHHHHH
Confidence            999999999999999989998889999999999988 88877899999999999999998     899999999999999


Q ss_pred             HHHHhCCCCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHH
Q psy15359        163 SYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINE  242 (281)
Q Consensus       163 ~~l~~G~~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~  242 (281)
                      +++++|+|++++++++++|+++||.+|++|+++++.+++|+++++++|+|+|+++|+|+++|||++|++|++||+|+|++
T Consensus       163 ~~l~~g~~s~~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~y~~~qi~aGad~i~ifDs~~~~Lsp~~f~ef~~Py~k~i~~  242 (368)
T 4exq_A          163 CYMVEGGGSDDFRTVKSMAYARPDLMHRILDVNAQAVAAYLNAQIEAGAQAVMIFDTWGGALADGAYQRFSLDYIRRVVA  242 (368)
T ss_dssp             HHHHHTBCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEETTGGGSCTTHHHHHTHHHHHHHHH
T ss_pred             HHHHcCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHH
Confidence            99999988888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCCCCcEEEEecCCcccchhhhcCCCCCCC
Q psy15359        243 KVKAQLKQMNNDVPMTIFAKGAPKQGHNCYNYSNPMLS  280 (281)
Q Consensus       243 ~i~~~~~~~~~~~~~ilH~cG~~~~~~~~~~~~~~~~~  280 (281)
                      .+++..+  |+++++++|+||+...++++.+++.+.++
T Consensus       243 ~l~~~~~--g~~~pvi~f~~g~~~~l~~l~~~g~d~i~  278 (368)
T 4exq_A          243 QLKREHD--GARVPAIAFTKGGGLWLEDLAATGVDAVG  278 (368)
T ss_dssp             TSCCEET--TEECCEEEEETTCGGGHHHHHTSSCSEEE
T ss_pred             HHHHhcC--CCCCcEEEEcCCcHHHHHHHHHhCCCEEe
Confidence            9987532  01179999999998789999999988754
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A* Back     alignment and structure
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri} Back     alignment and structure
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} Back     alignment and structure
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis} Back     alignment and structure
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1 Back     alignment and structure
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A Back     alignment and structure
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* Back     alignment and structure
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A Back     alignment and structure
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes} Back     alignment and structure
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A Back     alignment and structure
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* Back     alignment and structure
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP} Back     alignment and structure
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* Back     alignment and structure
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A Back     alignment and structure
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D* Back     alignment and structure
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* Back     alignment and structure
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 281
d1r3sa_356 c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD 2e-67
d1j93a_343 c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD 7e-48
>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]} Length = 356 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Uroporphyrinogen decarboxylase, UROD
domain: Uroporphyrinogen decarboxylase, UROD
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  211 bits (537), Expect = 2e-67
 Identities = 151/250 (60%), Positives = 187/250 (74%)

Query: 11  FPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITL 70
           FP LKND  LRAA GEE D  P+W MRQAGRYLPEFRE R+  DFF+ C++PE   E+TL
Sbjct: 1   FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTL 60

Query: 71  QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDVYKE 130
           QP+RRF LDA+IIFS ILV+PQALGM V M P  GP  PEPL   +DL++L+ P  V  E
Sbjct: 61  QPLRRFPLDAAIIFSGILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASE 120

Query: 131 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 190
           L YVF+AITLTR +L G+VPLIGF+GAPWTLM+YM+EGGGS TM+++K WLY+ P+ S +
Sbjct: 121 LGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQ 180

Query: 191 LLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLKQ 250
           LL ILT+ +V YLVGQ  AGAQ LQLFES+A +L   LF +FALPYI  + ++VKA+L++
Sbjct: 181 LLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE 240

Query: 251 MNNDVPMTIF 260
                   I 
Sbjct: 241 AGLAPVPMII 250
>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]} Length = 343 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query281
d1r3sa_356 Uroporphyrinogen decarboxylase, UROD {Human (Homo 100.0
d1j93a_343 Uroporphyrinogen decarboxylase, UROD {Tobacco (Nic 100.0
d1u1ha2365 5-methyltetrahydropteroyltriglutamate--homocystein 93.64
d1rqba2303 Transcarboxylase 5S subunit, N-terminal domain {Pr 81.7
>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Uroporphyrinogen decarboxylase, UROD
domain: Uroporphyrinogen decarboxylase, UROD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-51  Score=368.13  Aligned_cols=269  Identities=56%  Similarity=0.937  Sum_probs=243.5

Q ss_pred             CCCChHHHHHHHHcCCCCCccccccchhhhhchHHHHHHhcCCChhhhcCCHHHHHHHHHhHHHHcCCCeeeeccccccc
Q psy15359         11 FPPLKNDRLLRAARGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVI   90 (281)
Q Consensus        11 ~~~~~~ERv~aal~~~~~DRVPv~~~~~~g~~~~~~~~~~~~~~~~d~~~d~e~~a~~~~~~~~~~~~D~~~~~~d~~~~   90 (281)
                      |+++++||+++|++||++||+|||+|+|||+|+|+|++++.+.++.|+|+||+++++++++++++||+|++.+++|+.++
T Consensus         1 ~~~~~ne~~l~al~g~~~dr~PVw~MrqAGRylpey~~~r~~~~f~e~~~~pe~~ae~tl~p~~~~~~DaaiifsDil~~   80 (356)
T d1r3sa_           1 FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTLQPLRRFPLDAAIIFSGILVV   80 (356)
T ss_dssp             CCCCSCCHHHHHHHTCCCSSCCBCCTTSSSTTSHHHHHHHHTSCHHHHHTCHHHHHHHHHHHHHHSCCSCEECCCCTTHH
T ss_pred             CCCcchHHHHHHHcCCCCCCCCEEEEecccccCHHHHHHHhcCCHHHHhcCHHHHHHHHhhHHHhCCcceeeeccccchh
Confidence            56777899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCEEEecCCCCCcCCCCCCChHHHhcCCCCCCc-ccchHHHHHHHHHHHHHcCCCccEEEecCcHHHHHHHHHhCC
Q psy15359         91 PQALGMVVEMKPAVGPVLPEPLVIPEDLKKLKTPVDV-YKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGG  169 (281)
Q Consensus        91 ~ea~G~~~~~~~~~~p~~~~~i~~~eD~~~l~~~~d~-~~~~~~~~~~~~~l~~~~~~~~~i~~~~~gPf~~a~~l~~G~  169 (281)
                      +++||+++.|.++.+|.+..++.+.+|+.++.. ++. .++++.+.++++.+++++++++|++|+++||||+++++++|+
T Consensus        81 ~ealG~~v~f~~~~gp~~~~~~~~~~~~~~~~~-~~~~~~~l~~v~eai~~~~~~l~~~~pliGf~ggP~Tla~yli~~~  159 (356)
T d1r3sa_          81 PQALGMEVTMVPGKGPSFPEPLREEQDLERLRD-PEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGG  159 (356)
T ss_dssp             HHHTTCCCEEETTTEEECSSCCCSGGGGGGSCC-GGGHHHHTHHHHHHHHHHHHHHTTSSCEEEEEECHHHHHHHHHHSS
T ss_pred             hhhcCceeeecCCCCccCCcccccchhhhhccc-chhhhhhhHHHHHHHHHHHHHhccccccceeeechHHHHHHHHhcc
Confidence            999999999999888988878888888888776 543 478999999999999999999999999999999999999998


Q ss_pred             CCCchHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHhHHHHHHHHHHHHHhhc
Q psy15359        170 GSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYLVGQAKAGAQLLQLFESNAEYLDLDLFKEFALPYINTINEKVKAQLK  249 (281)
Q Consensus       170 ~~~g~e~~~~~l~~~Pe~v~~lle~i~d~~i~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~Py~k~l~~~i~~~~~  249 (281)
                      +++++++++.+++++||.++++|+++|+.+++|+++|+++|||+|+++|+|++.|||++|++|+.||++++++.+++..+
T Consensus       160 ~~~~~~~~~~~~~~~pe~~~~ll~~lt~~~~~~~~~qi~aGad~i~ifDs~a~~l~~~~~~~~~~~~~~~i~~~i~~~~~  239 (356)
T d1r3sa_         160 GSSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLR  239 (356)
T ss_dssp             CCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhhcccccceecccccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999987632


Q ss_pred             cCCCCCcEEEEecCCcc-cchhhhcCCCCCCC
Q psy15359        250 QMNNDVPMTIFAKGAPK-QGHNCYNYSNPMLS  280 (281)
Q Consensus       250 ~~~~~~~~ilH~cG~~~-~~~~~~~~~~~~~~  280 (281)
                      ..+-.....+|.||... .++.+.+++.+.+|
T Consensus       240 ~~~~~~~~~i~~~~~~~~~l~~~~~~g~d~is  271 (356)
T d1r3sa_         240 EAGLAPVPMIIFAKDGHFALEELAQAGYEVVG  271 (356)
T ss_dssp             HTTCCCCCEEEEETTCGGGHHHHTTSSCSEEE
T ss_pred             cccCCCceeeecchhHHHHHHHHhccCccccc
Confidence            10000124567777765 68889998887664
>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]} Back     information, alignment and structure
>d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} Back     information, alignment and structure