Psyllid ID: psy15384

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Protein Sequence
MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKPSEGKKRKHGIDDSGDGPRSKMLKSIQS
Secondary Structure (PSIPRED)
cccccEEEEEEccEEEEEEcccccccccccccEEEccccccEEEEcccEEEEccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccEEEEEEEEEEcccccEEEEEcccccEEEccEEEEcccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccEEEEccccccccccccccEEcccccccccccEEEEEEcEEccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEcccEEEEEEccccccccccccEEEEcccccEEEEEccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccEEEEEEEEEccEEEEEEEEcccccEEEccEEEEcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccEEEEEEEEccccccccccccccccccccEEEEEEcccEEEEEEEEEEEEEEccccccccccccccccc
Coil and Loop (DISEMBL)
mtgtticgllyedgvilgadtratmkdasgssilidhNCSKINRLSekiyccgagsaaDMKRLSGLVEanlecqfpkahtdipvicpvtmIKQTLYKYHGYLMCAFIIGgidsaggnQLFSIFqhgsshghkfcamgtglqpaMGILEAgwkenlsekeGLTLMVDAIKAGILydlgsgskvDVTIIRkngqvssykpykvlsdrmpkcvqciiplgttkvlstqvipiekkpsegkkrkhgiddsgdgprskmlksiqs
Flexible Loop (DISEMBL)
mtgtticgllyedGVILGADTRATMKdasgssilidHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQfpkahtdipvicPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTiirkngqvssyKPYKVLSDRMPKCVQCIIPlgttkvlstqvipiekkpsegkkrkhgiddsgdgprskmlksiqs
Low Complexity Region (SEG)
MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKPSEGKKRKHGIDDSGDGPRSKMLKSIQS
Disordered region (IsUnstruct)
***TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIP********************************
Disordered Region (DISOPRED)
MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKK****************************
Disordered Region (DISEMBL)
MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKK****************************
Disordered Region (DISPRO)
MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKPSEGKKRKHGIDD***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKPSEGKKRKHGIDDSGDGPRSKMLKSIQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	260	2.2.26 [Sep-21-2011]
Q99436	277	Proteasome subunit beta t	yes	N/A	0.853	0.801	0.397	5e-42
Q9JHW0	277	Proteasome subunit beta t	yes	N/A	0.853	0.801	0.397	2e-41
P70195	277	Proteasome subunit beta t	yes	N/A	0.853	0.801	0.393	5e-41
P25043	261	Proteasome subunit beta t	yes	N/A	0.853	0.850	0.381	4e-40
Q2TBP0	277	Proteasome subunit beta t	yes	N/A	0.853	0.801	0.388	8e-40
A1XQU1	277	Proteasome subunit beta t	yes	N/A	0.853	0.801	0.388	9e-40
Q7DLS1	274	Proteasome subunit beta t	yes	N/A	0.861	0.817	0.389	7e-39
Q3T0T1	273	Proteasome subunit beta t	no	N/A	0.838	0.798	0.402	1e-38
O23710	273	Proteasome subunit beta t	yes	N/A	0.861	0.820	0.389	1e-38
Q54QR2	266	Proteasome subunit beta t	yes	N/A	0.861	0.842	0.406	2e-37

>sp|Q99436|PSB7_HUMAN Proteasome subunit beta type-7 OS=Homo sapiens GN=PSMB7 PE=1 SV=1

 Score =  171 bits (433), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 91/229 (39%), Positives = 139/229 (60%), Gaps = 7/229 (3%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTI G++Y+DG++LGADTRAT        ++ D NCSKI+ +S  IYCCGAG+AAD  
Sbjct: 42  TGTTIAGVVYKDGIVLGADTRATE-----GMVVADKNCSKIHFISPNIYCCGAGTAADTD 96

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
             + L+ +NLE           V+    M+KQ L++Y GY+  A ++GG+D   G  L+S
Sbjct: 97  MTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYS 155

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           I+ HGS+    +  MG+G   AM + E  ++ ++ E+E   L+ +AI AGI  DLGSGS 
Sbjct: 156 IYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSN 215

Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
           +D+ +I KN ++   +PY V + +  +  +     GTT VL+ ++ P+E
Sbjct: 216 IDLCVISKN-KLDFLRPYTVPNKKGTRLGRYRCEKGTTAVLTEKITPLE 263

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This unit is responsible of the trypsin-like activity.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 4EC: .EC: 2EC: 5EC: .EC: 1

>sp|Q9JHW0|PSB7_RAT Proteasome subunit beta type-7 OS=Rattus norvegicus GN=Psmb7 PE=1 SV=1

 Score =  169 bits (427), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/229 (39%), Positives = 139/229 (60%), Gaps = 7/229 (3%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTI G++Y+DG++LGADTRAT        ++ D NCSKI+ +S  IYCCGAG+AAD  
Sbjct: 42  TGTTIAGVVYKDGIVLGADTRATE-----GMVVADKNCSKIHFISPNIYCCGAGTAADTD 96

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
             + L+ +NLE           V+    M+KQ L++Y GY+  A ++GG+D   G  L+S
Sbjct: 97  MTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYS 155

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           I+ HGS+    +  MG+G   AM + E  ++ ++ E+E   L+ +AI AGI  DLGSGS 
Sbjct: 156 IYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSN 215

Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
           +D+ +I K+ ++   +PY V + +  +  +     GTT VL+ +V P+E
Sbjct: 216 IDLCVISKS-KLDFLRPYSVPNKKGTRFGRYRCEKGTTAVLTEKVTPLE 263

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P70195|PSB7_MOUSE Proteasome subunit beta type-7 OS=Mus musculus GN=Psmb7 PE=1 SV=1

 Score =  167 bits (424), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 90/229 (39%), Positives = 139/229 (60%), Gaps = 7/229 (3%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTI G++Y+DG++LGADTRAT        ++ D NCSKI+ +S  IYCCGAG+AAD  
Sbjct: 42  TGTTIAGVVYKDGIVLGADTRATE-----GMVVADKNCSKIHFISPNIYCCGAGTAADTD 96

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
             + L+ +NLE           V+    M+KQ L++Y GY+  A ++GG+D   G  L+S
Sbjct: 97  MTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYS 155

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           I+ HGS+    +  MG+G   AM + E  ++ ++ E+E   L+ +AI AGI  DLGSGS 
Sbjct: 156 IYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSN 215

Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
           +D+ +I K+ ++   +P+ V + +  +  +     GTT VL+ +V P+E
Sbjct: 216 IDLCVISKS-KLDFLRPFSVPNKKGTRLGRYRCEKGTTAVLTEKVTPLE 263

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This unit is responsible of the trypsin-like activity of the proteasome.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P25043|PSB2_YEAST Proteasome subunit beta type-2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUP1 PE=1 SV=1

 Score =  164 bits (416), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 136/228 (59%), Gaps = 6/228 (2%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTI G+ + +GV++ ADTR+T        I+ D NC+K++R+S KI+C GAG+AAD +
Sbjct: 28  TGTTIVGVKFNNGVVIAADTRSTQ-----GPIVADKNCAKLHRISPKIWCAGAGTAADTE 82

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
            ++ L+ +N+E        +  V+  + M+KQ L+KY G++    I+ G+D  G + LFS
Sbjct: 83  AVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTG-SHLFS 141

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           I  HGS+    + ++G+G   AM +LE+ WK++L+++E + L  DAI+AGI  DLGSGS 
Sbjct: 142 IHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSN 201

Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPI 229
           VDV ++         + Y   + R  K      P GTT VL   ++ I
Sbjct: 202 VDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTAVLKESIVNI 249

The proteasome degrades poly-ubiquitinated proteins in the cytoplasm and in the nucleus. It is essential for the regulated turnover of proteins and for the removal of misfolded proteins. The proteasome is a multicatalytic proteinase complex that is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. It has an ATP-dependent proteolytic activity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q2TBP0|PSB7_BOVIN Proteasome subunit beta type-7 OS=Bos taurus GN=PSMB7 PE=1 SV=1

 Score =  164 bits (414), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 89/229 (38%), Positives = 137/229 (59%), Gaps = 7/229 (3%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTI G++Y+DG++LGADTRAT        ++ D NCSKI+ +S  IYCCGAG+AAD  
Sbjct: 42  TGTTIAGVVYKDGIVLGADTRATE-----GMVVADKNCSKIHFISPNIYCCGAGTAADTD 96

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
             + L+ +NLE           V+    M+KQ L++Y GY+  A ++GG+D   G  L+S
Sbjct: 97  MTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYS 155

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           I+ HGS+    +  MG+G   AM + E  ++ ++ E+E   L+ +AI AGI  DLGSGS 
Sbjct: 156 IYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSN 215

Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
           +D+ +I K+ ++   +PY V + +  +  +     GT  VL+ +V  +E
Sbjct: 216 IDLCVISKS-KLDFLRPYSVPNKKGTRFGRYRCEKGTNAVLTEKVTTLE 263

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|A1XQU1|PSB7_PIG Proteasome subunit beta type-7 OS=Sus scrofa GN=PSMB7 PE=2 SV=2

 Score =  163 bits (413), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 89/229 (38%), Positives = 137/229 (59%), Gaps = 7/229 (3%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTI G++Y+DG++LGADTRAT        ++ D NCSKI+ +S  IYCCGAG+AAD  
Sbjct: 42  TGTTIAGVVYKDGIVLGADTRATE-----GMVVADKNCSKIHFISPNIYCCGAGTAADTD 96

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
             + L+ +NLE           V+    M+KQ L++Y GY+  A ++GG+D   G  L+S
Sbjct: 97  MTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYS 155

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           I+ HGS+    +  MG+G   AM + E  ++  + E+E   L+ +AI AGI  DLGSGS 
Sbjct: 156 IYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPEMEEEEAKQLVSEAIAAGIFNDLGSGSN 215

Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
           +D+ +I K+ ++   +PY V + +  +  +     GTT VL+ +V  ++
Sbjct: 216 IDLCVISKS-KLDFLRPYSVPNKKGTRFGRYRCEKGTTAVLTEKVTALD 263

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q7DLS1|PSB7B_ARATH Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2 PE=1 SV=2

 Score =  160 bits (405), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 90/231 (38%), Positives = 137/231 (59%), Gaps = 7/231 (3%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTI GL+++DGVILGADTRAT        I+ D NC KI+ ++  IYCCGAG+AAD +
Sbjct: 38  TGTTIVGLIFKDGVILGADTRATE-----GPIVADKNCEKIHYMAPNIYCCGAGTAADTE 92

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
            ++ +V + L     +   D  V+  +T++K+ L+ Y G++  A ++GG+D   G  L +
Sbjct: 93  AVTDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGHVSAALVLGGVDIT-GPHLHT 151

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           I+ HGS+    F  MG+G   AM + EA +KE L+  EG+ L+ +AI +GI  DLGSGS 
Sbjct: 152 IYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAEAICSGIFNDLGSGSN 211

Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKK 232
           VD+ +I K G     + Y   + R     +       T+VL T++ P+ ++
Sbjct: 212 VDICVITK-GHKEYLRNYMEPNPRTYVSSKGYSFTKKTEVLLTKITPLLER 261

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q3T0T1|PSB10_BOVIN Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1

 Score =  160 bits (404), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 93/231 (40%), Positives = 134/231 (58%), Gaps = 13/231 (5%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTI GL+++DGVILGADTRAT       S++ D  C KI+ ++ KIYCCGAG AAD +
Sbjct: 38  TGTTIAGLVFQDGVILGADTRAT-----NDSVVADKICEKIHFIAPKIYCCGAGVAADAE 92

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
             + +  +N+E        +  V     M++QTL++Y GY+  + I+GG+D   G QL+S
Sbjct: 93  MTTRMAASNMELHALSTGRECRVATVTRMLRQTLFRYQGYVGASLIVGGVDFT-GPQLYS 151

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           +  HGS     F A+G+G   A+ +LE  ++ N++ +    L+V+AI AGIL DLGSG  
Sbjct: 152 VHPHGSYSRLPFTALGSGQDAAIAVLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGN 211

Query: 182 VDVTIIRKNGQVSSYKPYKVLSD---RMPKCVQCIIPLGTTKVLSTQVIPI 229
           VD  +I   G     K  + LS     + +  Q     GTT VLS  V+P+
Sbjct: 212 VDACVITAAGA----KMLRALSSPTKPIERSSQYRFAPGTTPVLSQTVVPL 258

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This subunit is involved in antigen processing to generate class I binding peptides.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|O23710|PSB7A_ARATH Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1 PE=1 SV=2

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/231 (38%), Positives = 137/231 (59%), Gaps = 7/231 (3%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTI GL+++DGVILGADTRAT        I+ D NC KI+ ++  IYCCGAG+AAD +
Sbjct: 38  TGTTIVGLIFKDGVILGADTRATE-----GPIVADKNCEKIHYMAPNIYCCGAGTAADTE 92

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
            ++ +V + L     +   D  VI  +T++K+ L+ Y G++  A ++GG+D   G  L +
Sbjct: 93  AVTDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGHVSAALVLGGVDIT-GPHLHT 151

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           I+ HGS+    F  MG+G   AM + EA +KE L+  EG+ L+ ++I +GI  DLGSGS 
Sbjct: 152 IYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAESICSGIFNDLGSGSN 211

Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKK 232
           VD+ +I K G     + Y   + R     +       T+VL T++ P+ ++
Sbjct: 212 VDICVITK-GNKEYLRNYMEPNPRTYVSSKGYSFTKKTEVLLTKITPLLER 261

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q54QR2|PSB7_DICDI Proteasome subunit beta type-7 OS=Dictyostelium discoideum GN=psmB7 PE=3 SV=1

 Score =  155 bits (393), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/231 (40%), Positives = 141/231 (61%), Gaps = 7/231 (3%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTI G++Y+ GV+LGADTRAT        I+ D NC KI+ +++ IYCCGAG+AAD +
Sbjct: 33  TGTTIVGVVYKGGVVLGADTRAT-----EGPIVADKNCEKIHYIADNIYCCGAGTAADTE 87

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
             + L+ + L+           VI  +TM+KQ L+KY G++  A I+GGID   G  L +
Sbjct: 88  SATALISSKLKLHKLSTGKQTRVITALTMLKQMLFKYQGHISAALILGGID-INGPSLHT 146

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           I+ HGS+    +  MG+G   AM + EA +K +++++E + L+ +AI +GI  DLGSGS 
Sbjct: 147 IYPHGSTDQLPYVTMGSGSLAAMAVFEAKYKNDMTKEEAIALVAEAISSGIFNDLGSGSN 206

Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKK 232
           VDVT+I  +G V+  + Y+  ++R  +    I   GTT VL   + P+  K
Sbjct: 207 VDVTVIEPSG-VTVLRNYQTPNERKFRNNPYIFKQGTTPVLKQDIAPLSTK 256

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
325182082	311	proteasome subunit beta type7 putative [	0.834	0.697	0.422	1e-46
389608763	281	proteasome beta2 subunit [Papilio xuthus	0.857	0.793	0.436	1e-46
325182084	314	proteasome subunit beta type7 putative [	0.834	0.691	0.422	2e-46
325182083	320	proteasome subunit beta type7 putative [	0.834	0.678	0.422	2e-46
383848658	277	PREDICTED: proteasome subunit beta type-	0.85	0.797	0.438	3e-46
66519842	277	PREDICTED: proteasome subunit beta type-	0.85	0.797	0.429	1e-45
380027029	277	PREDICTED: proteasome subunit beta type-	0.85	0.797	0.425	1e-45
422292999	290	20S proteasome subunit beta 2 [Nannochlo	0.85	0.762	0.412	3e-45
357604314	274	proteasome subunit beta 7 [Danaus plexip	0.857	0.813	0.427	7e-45
350404659	277	PREDICTED: proteasome subunit beta type-	0.85	0.797	0.434	1e-44

>gi|325182082|emb|CCA16536.1| proteasome subunit beta type7 putative [Albugo laibachii Nc14]

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 98/232 (42%), Positives = 153/232 (65%), Gaps = 15/232 (6%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTICG++Y+DGV+LGADTR+T     G +I++D NC KI+ ++  IYCCGAG+AAD +
Sbjct: 67  TGTTICGVVYKDGVVLGADTRST-----GGTIVMDKNCEKIHYIAPNIYCCGAGTAADTE 121

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
             + L+ + LE      +T+  V+  +T++KQ L++Y G++  A ++GG+D A G  L++
Sbjct: 122 NTTALISSQLELHRLNTNTESRVVTAMTLLKQMLFRYQGHISAALVLGGVD-ATGPHLYT 180

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           ++ HGS+    +  MG+G   AM + E G+K++++E+E   L+ DAI AG+  DLGSGS 
Sbjct: 181 VYPHGSTDKLPYVTMGSGSLAAMSMFEQGYKDDMTEEEAKKLVQDAILAGVFNDLGSGSN 240

Query: 182 VDVTIIRK--NG-----QVSSYKPYKV--LSDRMPKCVQCIIPLGTTKVLST 224
           VD+TII+K  NG      ++S KP +V  L D++ + +   IP G T VL +
Sbjct: 241 VDITIIKKGPNGVEVVQDINSIKPNEVSQLRDQVKRNIVTDIPRGATAVLKS 292

Source: Albugo laibachii Nc14

Species: Albugo laibachii

Genus: Albugo

Family: Albuginaceae

Order: Albuginales

Superkingdom: Eukaryota

>gi|389608763|dbj|BAM17993.1| proteasome beta2 subunit [Papilio xuthus]

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 100/229 (43%), Positives = 143/229 (62%), Gaps = 6/229 (2%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTI G++Y DGVILGADTRAT      ++++ D NC KI+ L+  +YCCGAG+AAD +
Sbjct: 38  TGTTIVGIIYADGVILGADTRATE-----NTVVSDKNCQKIHYLASNMYCCGAGTAADTE 92

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
             +  V + LE Q       +PV    T++K+ L++Y GY+  A ++GG+D  G + ++ 
Sbjct: 93  MTTQTVASQLELQRLHTGRTVPVETASTLLKRMLFRYQGYIGAALVLGGVDRTGPH-IYC 151

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           I+ HGS     +  MG+G   AM + E+GWK NLSE+EG  L+ DAI AGI  DLGSGS 
Sbjct: 152 IYPHGSVDKLPYATMGSGSLAAMAVFESGWKPNLSEEEGKKLVRDAIAAGIFNDLGSGSN 211

Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
           VD+ +IR +G     + Y+  + +  K      P+GTT VL  +VIP+E
Sbjct: 212 VDLCVIRNSGPAQYLRTYEEANIKGKKQGSYRYPIGTTAVLKQRVIPLE 260

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|325182084|emb|CCA16538.1| proteasome subunit beta type7 putative [Albugo laibachii Nc14]

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 98/232 (42%), Positives = 153/232 (65%), Gaps = 15/232 (6%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTICG++Y+DGV+LGADTR+T     G +I++D NC KI+ ++  IYCCGAG+AAD +
Sbjct: 70  TGTTICGVVYKDGVVLGADTRST-----GGTIVMDKNCEKIHYIAPNIYCCGAGTAADTE 124

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
             + L+ + LE      +T+  V+  +T++KQ L++Y G++  A ++GG+D A G  L++
Sbjct: 125 NTTALISSQLELHRLNTNTESRVVTAMTLLKQMLFRYQGHISAALVLGGVD-ATGPHLYT 183

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           ++ HGS+    +  MG+G   AM + E G+K++++E+E   L+ DAI AG+  DLGSGS 
Sbjct: 184 VYPHGSTDKLPYVTMGSGSLAAMSMFEQGYKDDMTEEEAKKLVQDAILAGVFNDLGSGSN 243

Query: 182 VDVTIIRK--NG-----QVSSYKPYKV--LSDRMPKCVQCIIPLGTTKVLST 224
           VD+TII+K  NG      ++S KP +V  L D++ + +   IP G T VL +
Sbjct: 244 VDITIIKKGPNGVEVVQDINSIKPNEVSQLRDQVKRNIVTDIPRGATAVLKS 295

Source: Albugo laibachii Nc14

Species: Albugo laibachii

Genus: Albugo

Family: Albuginaceae

Order: Albuginales

Superkingdom: Eukaryota

>gi|325182083|emb|CCA16537.1| proteasome subunit beta type7 putative [Albugo laibachii Nc14]

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 98/232 (42%), Positives = 153/232 (65%), Gaps = 15/232 (6%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTICG++Y+DGV+LGADTR+T     G +I++D NC KI+ ++  IYCCGAG+AAD +
Sbjct: 76  TGTTICGVVYKDGVVLGADTRST-----GGTIVMDKNCEKIHYIAPNIYCCGAGTAADTE 130

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
             + L+ + LE      +T+  V+  +T++KQ L++Y G++  A ++GG+D A G  L++
Sbjct: 131 NTTALISSQLELHRLNTNTESRVVTAMTLLKQMLFRYQGHISAALVLGGVD-ATGPHLYT 189

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           ++ HGS+    +  MG+G   AM + E G+K++++E+E   L+ DAI AG+  DLGSGS 
Sbjct: 190 VYPHGSTDKLPYVTMGSGSLAAMSMFEQGYKDDMTEEEAKKLVQDAILAGVFNDLGSGSN 249

Query: 182 VDVTIIRK--NG-----QVSSYKPYKV--LSDRMPKCVQCIIPLGTTKVLST 224
           VD+TII+K  NG      ++S KP +V  L D++ + +   IP G T VL +
Sbjct: 250 VDITIIKKGPNGVEVVQDINSIKPNEVSQLRDQVKRNIVTDIPRGATAVLKS 301

Source: Albugo laibachii Nc14

Species: Albugo laibachii

Genus: Albugo

Family: Albuginaceae

Order: Albuginales

Superkingdom: Eukaryota

>gi|383848658|ref|XP_003699965.1| PREDICTED: proteasome subunit beta type-7-like [Megachile rotundata]

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 100/228 (43%), Positives = 141/228 (61%), Gaps = 7/228 (3%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTI G++Y+DGV+LGADTRAT       +I+ D NC KI+ L+E +YCCGAG+AAD +
Sbjct: 38  TGTTIAGIIYKDGVVLGADTRATE-----GTIVADKNCRKIHYLAENMYCCGAGTAADTE 92

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
             + ++ + LE         +PV     M+KQ L++Y GY+  A I+GG+D   G  L+S
Sbjct: 93  MTTQMIFSQLELHRLNTGRIVPVCTANAMLKQLLFRYQGYIGAALILGGVD-LDGPHLYS 151

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           IF HGSS  H +  MG+G   AM + E+ WK  + E+E   L+ DAI+AG+  DLGSGS 
Sbjct: 152 IFPHGSSDKHMYTTMGSGSLAAMAVFESRWKPGMEEEEAKELVADAIRAGVFNDLGSGSN 211

Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPI 229
           VD+ +IRK G V   +PY V + +  + +      GTT +L+  V PI
Sbjct: 212 VDLCVIRK-GTVDFLRPYDVANVKGERSISYRYKRGTTAILNKTVHPI 258

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66519842|ref|XP_391905.2| PREDICTED: proteasome subunit beta type-7-like [Apis mellifera]

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 98/228 (42%), Positives = 144/228 (63%), Gaps = 7/228 (3%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTI G++Y+DGV+LG DTR+T      ++I+ D NCSKI+ L+E +YCCGAG+AAD +
Sbjct: 38  TGTTIAGVVYKDGVVLGGDTRST-----ENTIVADKNCSKIHYLAENMYCCGAGTAADTE 92

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
             + ++ + LE      +  +PV     MIKQ L++Y G++  A I+GG+D   G  L+ 
Sbjct: 93  MTTQMISSQLELHRLNTNRMVPVCTANAMIKQLLFRYQGHIGAALILGGVD-LDGPHLYC 151

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           I+ HGSS  H + +MGTG   AM + E+ WK +++E+E   L+ DAI+AG+  DL SGS 
Sbjct: 152 IYPHGSSDRHMYTSMGTGSLAAMAVFESRWKPDMTEEEAKELVADAIRAGVFNDLASGSN 211

Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPI 229
           VD+ +IRK G V   +PY V + +  + +      GTT VL+  V PI
Sbjct: 212 VDLCVIRK-GSVDYLRPYDVANVKGQRNISYRYKRGTTAVLNKTVHPI 258

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027029|ref|XP_003697239.1| PREDICTED: proteasome subunit beta type-7-like [Apis florea]

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 97/228 (42%), Positives = 144/228 (63%), Gaps = 7/228 (3%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTI G++Y+DG++LG DTR+T      ++I+ D NCSKI+ L+E +YCCGAG+AAD +
Sbjct: 38  TGTTIAGIVYKDGIVLGGDTRST-----ENTIVADKNCSKIHYLAENMYCCGAGTAADTE 92

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
             + ++ + LE      +  +PV     MIKQ L++Y G++  A I+GG+D   G  L+ 
Sbjct: 93  MTTQMISSQLELHRLNTNRMVPVCTANAMIKQLLFRYQGHIGAALILGGVD-LDGPHLYC 151

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           I+ HGSS  H + +MGTG   AM + E+ WK +++E+E   L+ DAI+AG+  DL SGS 
Sbjct: 152 IYPHGSSDRHMYTSMGTGSLAAMAVFESRWKPDMTEEEAKELVADAIRAGVFNDLASGSN 211

Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPI 229
           VD+ +IRK G V   +PY V + +  + +      GTT VL+  V PI
Sbjct: 212 VDLCVIRK-GSVDYLRPYDVANVKGQRNISYRYKRGTTAVLNKTVHPI 258

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|422292999|gb|EKU20300.1| 20S proteasome subunit beta 2 [Nannochloropsis gaditana CCMP526]

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 96/233 (41%), Positives = 147/233 (63%), Gaps = 12/233 (5%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTI G+ ++DGV+LGADTRAT     G + + D NC KI+ L+  IYCCGAG+AAD +
Sbjct: 46  TGTTIAGVTFKDGVVLGADTRAT-----GGTEVADKNCEKIHYLAPNIYCCGAGTAADTE 100

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
           + + ++ + L+       +   V+   TM+K+ L++Y G++  A ++GG+DS+G   L+ 
Sbjct: 101 KTTEMISSQLDLLRLSTGSPSRVVTACTMLKRMLFRYQGHVSAALVLGGVDSSGA-HLYQ 159

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           I+ HGS+  + +  MG+G   AM + E G+KE+++E E + L+ +AI AGI  DLGSGS 
Sbjct: 160 IYPHGSTDKNPYVTMGSGSLAAMSVFETGFKEDMTEAEAIELVKEAILAGIYNDLGSGSN 219

Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMP------KCVQCIIPLGTTKVLSTQVIP 228
           VD+TIIR+NG+V+  + Y   +D  P      +     +P G T VLST + P
Sbjct: 220 VDLTIIRRNGEVTVLRGYLTPNDVEPLRTSYKRPAALSVPAGATAVLSTHMDP 272

Source: Nannochloropsis gaditana CCMP526

Species: Nannochloropsis gaditana

Genus: Nannochloropsis

Family: Monodopsidaceae

Order: Eustigmatales

Phylum: Eustigmatophyceae

Superkingdom: Eukaryota

>gi|357604314|gb|EHJ64129.1| proteasome subunit beta 7 [Danaus plexippus]

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 98/229 (42%), Positives = 141/229 (61%), Gaps = 6/229 (2%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTI G++Y DGVILGADTRAT      ++++ D NC KI+ L+  +YCCGAG+AAD +
Sbjct: 38  TGTTIVGIIYADGVILGADTRATE-----NTVVSDKNCQKIHYLAGNMYCCGAGTAADTE 92

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
             +  V + LE Q       +PV    T++K+ L++Y G++  A ++GG+D  G   ++ 
Sbjct: 93  MTTQTVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDRTG-PHIYC 151

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           I+ HGS     +  MG+G   AM + E+ WK N+SE+EG  L+ DAI AGI  DLGSGS 
Sbjct: 152 IYPHGSVDKLPYATMGSGSLAAMAVFESRWKPNMSEEEGKKLVRDAIAAGIFNDLGSGSN 211

Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
           VD+ +IR +G     + Y+  + +  K      PLGTT VL  +VIP+E
Sbjct: 212 VDLCVIRSSGPAQYLRTYEEANVKGKKQGSYRYPLGTTAVLRQRVIPLE 260

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404659|ref|XP_003487177.1| PREDICTED: proteasome subunit beta type-7-like [Bombus impatiens]

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 99/228 (43%), Positives = 142/228 (62%), Gaps = 7/228 (3%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTI G++Y+DGV+LG DTR+T      ++I+ D NCSKI+ L+E IYCCGAG+AAD +
Sbjct: 38  TGTTIAGVVYKDGVVLGGDTRSTE-----NTIVADKNCSKIHYLTENIYCCGAGTAADTE 92

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
             + ++ + LE      +  +PV     MIKQ L++Y G +  A I+GG+D   G  L+ 
Sbjct: 93  MTTQMISSQLELHRLNTNRIVPVCTANAMIKQLLFRYQGNIGAALILGGVD-LDGPHLYC 151

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           I  HGSS  H + +MGTG   AM + E+ WK +++E++   L+ DAI+AGI  DL SGS 
Sbjct: 152 IHPHGSSDRHIYTSMGTGSLAAMAVFESRWKPDMTEEQAKELVADAIRAGIFNDLASGSN 211

Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPI 229
           VD+ +IRK G V   +PY V + +  + +      GTT VL+  V PI
Sbjct: 212 VDLCVIRK-GSVDYLRPYDVANVKGQRNISYRYKRGTTAVLNKTVHPI 258

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
FB|FBgn0023174	272	Prosbeta2 "Proteasome beta2 su	0.838	0.801	0.417	7.3e-43
DICTYBASE|DDB_G0283679	266	psmB7 "proteasome subunit beta	0.861	0.842	0.411	6.6e-42
FB|FBgn0029812	308	Prosbeta2R1 "Proteasome beta2	0.953	0.805	0.378	2.2e-41
UNIPROTKB|Q99436	277	PSMB7 "Proteasome subunit beta	0.853	0.801	0.401	1.2e-40
UNIPROTKB|Q7ZT63	277	cpsmb7 "Proteasome subunit bet	0.853	0.801	0.414	1.6e-40
CGD|CAL0000797	272	PUP1 [Candida albicans (taxid:	0.842	0.805	0.413	5.3e-40
RGD|621093	277	Psmb7 "proteasome (prosome, ma	0.853	0.801	0.401	5.3e-40
ZFIN|ZDB-GENE-001208-4	286	psmb7 "proteasome (prosome, ma	0.846	0.769	0.407	5.3e-40
MGI|MGI:107637	277	Psmb7 "proteasome (prosome, ma	0.853	0.801	0.397	1.1e-39
UNIPROTKB|F1MBI1	277	PSMB7 "Proteasome subunit beta	0.853	0.801	0.397	2.9e-39

FB|FBgn0023174 Prosbeta2 "Proteasome beta2 subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 94/225 (41%), Positives = 142/225 (63%)

Query:     2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
             TGTTI G++Y+DGVILGADTRAT     G  I+ D NC+KI+ L++ IYCCGAG+AAD +
Sbjct:    38 TGTTIVGIIYKDGVILGADTRAT----EGP-IVSDKNCAKIHYLAKNIYCCGAGTAADTE 92

Query:    62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
               + L+ + LE    +   ++ V+   TM+KQ L++Y G++  A ++GG+D  G + ++S
Sbjct:    93 MTTDLISSQLELHRLQTDREVRVVAANTMLKQMLFRYQGHISAALVLGGVDKTGPH-IYS 151

Query:   122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
             I  HGSS    +  MG+G   AM + E+ WK +LSE+EG  L+ DA   G+  DLGSGS 
Sbjct:   152 IHPHGSSDKLPYATMGSGSLAAMTVFESRWKPDLSEEEGKKLVRDADPTGVFNDLGSGSN 211

Query:   182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQV 226
             +D+ +IRK G V   + Y++ + +  + +      GT+ VL T +
Sbjct:   212 IDLCVIRK-GSVEYLRNYELANKKGKRQLDYRFKTGTSTVLHTNI 255

GO:0005839 "proteasome core complex" evidence=ISS

GO:0004175 "endopeptidase activity" evidence=ISS

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

DICTYBASE|DDB_G0283679 psmB7 "proteasome subunit beta type 7" [Dictyostelium discoideum (taxid:44689)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 95/231 (41%), Positives = 142/231 (61%)

Query:     2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
             TGTTI G++Y+ GV+LGADTRAT     G  I+ D NC KI+ +++ IYCCGAG+AAD +
Sbjct:    33 TGTTIVGVVYKGGVVLGADTRAT----EGP-IVADKNCEKIHYIADNIYCCGAGTAADTE 87

Query:    62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
               + L+ + L+           VI  +TM+KQ L+KY G++  A I+GGID   G  L +
Sbjct:    88 SATALISSKLKLHKLSTGKQTRVITALTMLKQMLFKYQGHISAALILGGID-INGPSLHT 146

Query:   122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
             I+ HGS+    +  MG+G   AM + EA +K +++++E + L+ +AI +GI  DLGSGS 
Sbjct:   147 IYPHGSTDQLPYVTMGSGSLAAMAVFEAKYKNDMTKEEAIALVAEAISSGIFNDLGSGSN 206

Query:   182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKK 232
             VDVT+I  +G V+  + Y+  ++R  +    I   GTT VL   + P+  K
Sbjct:   207 VDVTVIEPSG-VTVLRNYQTPNERKFRNNPYIFKQGTTPVLKQDIAPLSTK 256

GO:0008233 "peptidase activity" evidence=IEA;IDA

GO:0006508 "proteolysis" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IPI

GO:0005634 "nucleus" evidence=IEA;IPI

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0029812 Prosbeta2R1 "Proteasome beta2 subunit-related 1" [Drosophila melanogaster (taxid:7227)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 98/259 (37%), Positives = 152/259 (58%)

Query:     2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
             TGT+I G++Y+DGVILGADTRAT     G  I+ D NCSKI+ L + IYCCGAG+AAD +
Sbjct:    48 TGTSIVGIIYKDGVILGADTRAT----EGP-IVSDKNCSKIHHLQDHIYCCGAGTAADTE 102

Query:    62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
              ++    A L+         +PV+C   M+++TL++Y G++  A ++GG+D+ G  QL+ 
Sbjct:   103 MITLTTSAELDLHRLNTERRVPVVCASMMLRRTLFRYQGHIGAALVMGGVDTTGP-QLYC 161

Query:   122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
             I+  GS+    + AMG+G   AM +LE GWK +L  ++G  L+ +AI AG+  DLGSGS 
Sbjct:   162 IYPCGSNDKIPYAAMGSGTLAAMSVLEHGWKPDLDLEQGKQLVREAISAGVFNDLGSGSN 221

Query:   182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKPSEGKKRKH 241
             +D+ +I   G V   +   + S++  +  +  I   +T V S  V+ ++       +R +
Sbjct:   222 IDLCVITAKGAVY-LRTDTIASEKGERLGKYGIKPNSTMVTSISVLSLQVTD----ERIY 276

Query:   242 GIDDSGDGPRSKMLKSIQS 260
              +DD   G     L S Q+
Sbjct:   277 AVDDQQPGTSGVQLDSQQA 295

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|Q99436 PSMB7 "Proteasome subunit beta type-7" [Homo sapiens (taxid:9606)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 92/229 (40%), Positives = 141/229 (61%)

Query:     2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
             TGTTI G++Y+DG++LGADTRAT     G  ++ D NCSKI+ +S  IYCCGAG+AAD  
Sbjct:    42 TGTTIAGVVYKDGIVLGADTRAT----EGM-VVADKNCSKIHFISPNIYCCGAGTAADTD 96

Query:    62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
               + L+ +NLE           V+    M+KQ L++Y GY+  A ++GG+D  G + L+S
Sbjct:    97 MTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPH-LYS 155

Query:   122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
             I+ HGS+    +  MG+G   AM + E  ++ ++ E+E   L+ +AI AGI  DLGSGS 
Sbjct:   156 IYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSN 215

Query:   182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
             +D+ +I KN ++   +PY V + +  +  +     GTT VL+ ++ P+E
Sbjct:   216 IDLCVISKN-KLDFLRPYTVPNKKGTRLGRYRCEKGTTAVLTEKITPLE 263

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005839 "proteasome core complex" evidence=ISS

GO:0000502 "proteasome complex" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q7ZT63 cpsmb7 "Proteasome subunit beta type" [Gallus gallus (taxid:9031)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 95/229 (41%), Positives = 140/229 (61%)

Query:     2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
             TGTTI G++++DGV+LGADTRAT     G  ++ D NCSKI+ +S  IYCCGAG+AAD +
Sbjct:    42 TGTTIAGVVFKDGVVLGADTRAT----EGM-VVADKNCSKIHYISSNIYCCGAGTAADTE 96

Query:    62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
               + L+ +NLE           V+    M+KQ L++Y GY+  A ++GG+D  G + L+S
Sbjct:    97 MTTQLIASNLELHALSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPH-LYS 155

Query:   122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
             I+ HGS+    +  MG+G   AM I E  +K ++ E+E   L+ DAI AGI  DLGSGS 
Sbjct:   156 IYPHGSTDKLPYVTMGSGSLAAMAIFEDKYKPDMEEEEAKQLVRDAIAAGIYNDLGSGSN 215

Query:   182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
             +D+ +I KN ++   +PY V + +  +  +     GTT VL+  V  +E
Sbjct:   216 IDICVISKN-KLDFIRPYDVANRKGERYGRYKCERGTTAVLTENVAHLE 263

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

CGD|CAL0000797 PUP1 [Candida albicans (taxid:5476)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 93/225 (41%), Positives = 135/225 (60%)

Query:     2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
             TGTTI G  ++DGV++ ADTRAT    SG  I+ D NC K++RL+ KI+C GAG+AAD +
Sbjct:    28 TGTTIVGCKFKDGVVIAADTRAT----SGP-IVADKNCEKLHRLAPKIWCAGAGTAADTE 82

Query:    62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
              ++ L+ +NLE      +    VI  +TM+KQ L+KY G+L    I+ G+D  G + L S
Sbjct:    83 MVTQLIASNLELHALSQNRQPRVIAALTMLKQHLFKYQGHLGAYLIVAGVDPTGAH-LMS 141

Query:   122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
             +  HGS+   K+ ++G+G   AM +LE  +KE+++  E + L  DAI AG+  DLGSGS 
Sbjct:   142 VQAHGSTDIGKYQSLGSGSLNAMAVLETNFKEDMTRDEAIKLCSDAILAGVWNDLGSGSN 201

Query:   182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQV 226
             VDV ++        Y+ Y   + R+ KC     P GTT VL   +
Sbjct:   202 VDVCVMEVGKDAELYRNYITPNVRIKKCKDYKFPRGTTAVLKQSI 246

GO:0005635 "nuclear envelope" evidence=IEA

GO:0019774 "proteasome core complex, beta-subunit complex" evidence=IEA

GO:0034515 "proteasome storage granule" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0010499 "proteasomal ubiquitin-independent protein catabolic process" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IEA

RGD|621093 Psmb7 "proteasome (prosome, macropain) subunit, beta type 7" [Rattus norvegicus (taxid:10116)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 92/229 (40%), Positives = 141/229 (61%)

Query:     2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
             TGTTI G++Y+DG++LGADTRAT     G  ++ D NCSKI+ +S  IYCCGAG+AAD  
Sbjct:    42 TGTTIAGVVYKDGIVLGADTRAT----EGM-VVADKNCSKIHFISPNIYCCGAGTAADTD 96

Query:    62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
               + L+ +NLE           V+    M+KQ L++Y GY+  A ++GG+D  G + L+S
Sbjct:    97 MTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPH-LYS 155

Query:   122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
             I+ HGS+    +  MG+G   AM + E  ++ ++ E+E   L+ +AI AGI  DLGSGS 
Sbjct:   156 IYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSN 215

Query:   182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
             +D+ +I K+ ++   +PY V + +  +  +     GTT VL+ +V P+E
Sbjct:   216 IDLCVISKS-KLDFLRPYSVPNKKGTRFGRYRCEKGTTAVLTEKVTPLE 263

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005839 "proteasome core complex" evidence=ISO;ISS

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

ZFIN|ZDB-GENE-001208-4 psmb7 "proteasome (prosome, macropain) subunit, beta type, 7" [Danio rerio (taxid:7955)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 97/238 (40%), Positives = 142/238 (59%)

Query:     2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
             TGTTICG++Y+DGV+LGADTRAT     G  I+ D NCSKI+ +S  IYCCGAG+AAD +
Sbjct:    42 TGTTICGIVYKDGVVLGADTRAT----EGM-IVADKNCSKIHYISPNIYCCGAGTAADTE 96

Query:    62 RLSGLVEANLECQFPKAHTDIPVICPVT-MIKQTLYKYHGYLMCAFIIGGIDSAGGNQLF 120
               + ++ +NLE         +P +     M+KQ L++Y GY+  A ++GG+D  G + L+
Sbjct:    97 MTTQIISSNLELHSLSTGR-LPRVATANRMLKQMLFRYQGYIGAALVLGGVDCTGPH-LY 154

Query:   121 SIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGS 180
             SI+ HGS+    +  MG+G   AM + E  ++ ++ E++  +L+ DAI AGI  DLGSGS
Sbjct:   155 SIYPHGSTDKLPYVTMGSGSLAAMAVFEDRYRPDMEEEDAKSLVRDAIAAGIFNDLGSGS 214

Query:   181 KVDVTIIRKNGQVSSYKPYKVLS---------DRMPKCVQCIIPLGTTKVLSTQVIPI 229
              +DV +I K G+V   +P+ + +         D  P         GTT VLS  V P+
Sbjct:   215 NIDVCVITK-GKVDYLRPHDIANKKGVREDKLDGRPVTGSYRYKHGTTGVLSKAVTPL 271

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

MGI|MGI:107637 Psmb7 "proteasome (prosome, macropain) subunit, beta type 7" [Mus musculus (taxid:10090)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 91/229 (39%), Positives = 141/229 (61%)

Query:     2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
             TGTTI G++Y+DG++LGADTRAT     G  ++ D NCSKI+ +S  IYCCGAG+AAD  
Sbjct:    42 TGTTIAGVVYKDGIVLGADTRAT----EGM-VVADKNCSKIHFISPNIYCCGAGTAADTD 96

Query:    62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
               + L+ +NLE           V+    M+KQ L++Y GY+  A ++GG+D  G + L+S
Sbjct:    97 MTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPH-LYS 155

Query:   122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
             I+ HGS+    +  MG+G   AM + E  ++ ++ E+E   L+ +AI AGI  DLGSGS 
Sbjct:   156 IYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSN 215

Query:   182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
             +D+ +I K+ ++   +P+ V + +  +  +     GTT VL+ +V P+E
Sbjct:   216 IDLCVISKS-KLDFLRPFSVPNKKGTRLGRYRCEKGTTAVLTEKVTPLE 263

GO:0000502 "proteasome complex" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|F1MBI1 PSMB7 "Proteasome subunit beta type" [Bos taurus (taxid:9913)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 91/229 (39%), Positives = 140/229 (61%)

Query:     2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
             TGTTI G++Y+DG++LGADTRAT     G  ++ D NCSKI+ +S  IYCCGAG+AAD  
Sbjct:    42 TGTTIAGVVYKDGIVLGADTRAT----EGM-VVADKNCSKIHFISPNIYCCGAGTAADTD 96

Query:    62 RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
               + L+ +NLE           V+    M+KQ L++Y GY+  A ++GG+D  G + L+S
Sbjct:    97 MTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPH-LYS 155

Query:   122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
             I+ HGS+    +  MG+G   AM + E  ++ ++ E+E   L+ +AI AGI  DLGSGS 
Sbjct:   156 IYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSN 215

Query:   182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
             +D+ +I K+ ++   +PY V + +  +  +     GTT VL+ +V  +E
Sbjct:   216 IDLCVISKS-KLDFLRPYSVPNKKGTRFGRYRCEKGTTAVLTEKVTTLE 263

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54QR2	PSB7_DICDI	3, ., 4, ., 2, 5, ., 1	0.4069	0.8615	0.8421	yes	N/A
P28061	PSB_THEAC	3, ., 4, ., 2, 5, ., 1	0.3025	0.7076	0.8720	yes	N/A
Q09841	PSB2_SCHPO	3, ., 4, ., 2, 5, ., 1	0.36	0.8384	0.8164	yes	N/A
Q9JHW0	PSB7_RAT	3, ., 4, ., 2, 5, ., 1	0.3973	0.8538	0.8014	yes	N/A
D3S8M7	PSB_METSF	3, ., 4, ., 2, 5, ., 1	0.3056	0.7153	0.8303	yes	N/A
C5A7L1	PSB1_THEGJ	3, ., 4, ., 2, 5, ., 1	0.3020	0.7076	0.9154	yes	N/A
Q8U125	PSB2_PYRFU	3, ., 4, ., 2, 5, ., 1	0.3118	0.7230	0.9126	yes	N/A
C7P6N4	PSB_METFA	3, ., 4, ., 2, 5, ., 1	0.3092	0.7115	0.8258	yes	N/A
A6USJ3	PSB_METVS	3, ., 4, ., 2, 5, ., 1	0.3108	0.7153	0.8493	yes	N/A
Q58634	PSB_METJA	3, ., 4, ., 2, 5, ., 1	0.3056	0.7153	0.8303	yes	N/A
A6VK02	PSB_METM7	3, ., 4, ., 2, 5, ., 1	0.3056	0.7153	0.8493	yes	N/A
Q2TBP0	PSB7_BOVIN	3, ., 4, ., 2, 5, ., 1	0.3886	0.8538	0.8014	yes	N/A
Q7DLS1	PSB7B_ARATH	3, ., 4, ., 2, 5, ., 1	0.3896	0.8615	0.8175	yes	N/A
A4FYA5	PSB_METM5	3, ., 4, ., 2, 5, ., 1	0.3005	0.7153	0.8493	yes	N/A
Q8SQN7	PSB2_ENCCU	3, ., 4, ., 2, 5, ., 1	0.3624	0.8384	0.9603	yes	N/A
O50110	PSB2_PYRHO	3, ., 4, ., 2, 5, ., 1	0.3186	0.7192	0.9033	yes	N/A
Q6LZD4	PSB_METMP	3, ., 4, ., 2, 5, ., 1	0.3056	0.7153	0.8493	yes	N/A
P25043	PSB2_YEAST	3, ., 4, ., 2, 5, ., 1	0.3815	0.8538	0.8505	yes	N/A
C9REN7	PSB_METVM	3, ., 4, ., 2, 5, ., 1	0.3043	0.7423	0.8654	yes	N/A
P70195	PSB7_MOUSE	3, ., 4, ., 2, 5, ., 1	0.3930	0.8538	0.8014	yes	N/A
A1XQU1	PSB7_PIG	3, ., 4, ., 2, 5, ., 1	0.3886	0.8538	0.8014	yes	N/A
Q99436	PSB7_HUMAN	3, ., 4, ., 2, 5, ., 1	0.3973	0.8538	0.8014	yes	N/A
O23710	PSB7A_ARATH	3, ., 4, ., 2, 5, ., 1	0.3896	0.8615	0.8205	yes	N/A
A1RWY6	PSB1_THEPD	3, ., 4, ., 2, 5, ., 1	0.3212	0.7038	0.915	yes	N/A
A9A788	PSB_METM6	3, ., 4, ., 2, 5, ., 1	0.3056	0.7153	0.8493	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.25.1	0.824
3rd Layer	3.4.25	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	260
cd03763	189	cd03763, proteasome_beta_type_7, proteasome beta t	2e-73
cd01912	189	cd01912, proteasome_beta, proteasome beta subunit	7e-51
pfam00227	188	pfam00227, Proteasome, Proteasome subunit	6e-45
cd01906	182	cd01906, proteasome_protease_HslV, proteasome_prot	6e-44
COG0638	236	COG0638, PRE1, 20S proteasome, alpha and beta subu	3e-36
TIGR03634	185	TIGR03634, arc_protsome_B, proteasome endopeptidas	2e-30
cd03764	188	cd03764, proteasome_beta_archeal, Archeal proteaso	3e-30
cd03762	188	cd03762, proteasome_beta_type_6, proteasome beta t	1e-27
cd01901	164	cd01901, Ntn_hydrolase, The Ntn hydrolases (N-term	1e-27
cd01911	209	cd01911, proteasome_alpha, proteasome alpha subuni	5e-17
cd03756	211	cd03756, proteasome_alpha_archeal, proteasome_alph	2e-14
cd03758	193	cd03758, proteasome_beta_type_2, proteasome beta t	3e-13
TIGR03633	224	TIGR03633, arc_protsome_A, proteasome endopeptidas	5e-13
cd03761	188	cd03761, proteasome_beta_type_5, proteasome beta t	1e-12
PTZ00246	253	PTZ00246, PTZ00246, proteasome subunit alpha; Prov	4e-12
cd03760	197	cd03760, proteasome_beta_type_4, proteasome beta t	3e-11
PRK03996	241	PRK03996, PRK03996, proteasome subunit alpha; Prov	1e-10
cd03752	213	cd03752, proteasome_alpha_type_4, proteasome_alpha	2e-10
PTZ00488	247	PTZ00488, PTZ00488, Proteasome subunit beta type-5	1e-09
cd03757	212	cd03757, proteasome_beta_type_1, proteasome beta t	4e-09
cd03759	195	cd03759, proteasome_beta_type_3, proteasome beta t	3e-08
cd03755	207	cd03755, proteasome_alpha_type_7, proteasome_alpha	7e-07
cd03753	213	cd03753, proteasome_alpha_type_5, proteasome_alpha	8e-06
cd03750	227	cd03750, proteasome_alpha_type_2, proteasome_alpha	1e-05
cd03751	212	cd03751, proteasome_alpha_type_3, proteasome_alpha	4e-05
TIGR03690	219	TIGR03690, 20S_bact_beta, proteasome, beta subunit	2e-04
cd01913	171	cd01913, protease_HslV, Protease HslV and the ATPa	4e-04
cd03754	215	cd03754, proteasome_alpha_type_6, proteasome_alpha	0.001

>gnl|CDD|239732 cd03763, proteasome_beta_type_7, proteasome beta type-7 subunit

 Score =  221 bits (566), Expect = 2e-73
 Identities = 83/196 (42%), Positives = 126/196 (64%), Gaps = 7/196 (3%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI G++++DGV+LGADTRAT        I+ D NC KI+ ++  IYCCGAG+AAD + +
Sbjct: 1   TTIVGVVFKDGVVLGADTRAT-----EGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAV 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
           + ++ +NLE           V+  +TM+KQ L++Y G++  A ++GG+D  G   L+SI+
Sbjct: 56  TNMISSNLELHRLNTGRKPRVVTALTMLKQHLFRYQGHIGAALVLGGVDYTG-PHLYSIY 114

Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
            HGS+    F  MG+G   AM +LE  +K +++E+E   L+ +AI+AGI  DLGSGS VD
Sbjct: 115 PHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAIEAGIFNDLGSGSNVD 174

Query: 184 VTIIRKNGQVSSYKPY 199
           + +I K+G V   + Y
Sbjct: 175 LCVITKDG-VEYLRNY 189

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189

>gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit

 Score =  164 bits (418), Expect = 7e-51
 Identities = 68/189 (35%), Positives = 105/189 (55%), Gaps = 6/189 (3%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI G+  +DGV+L ADTRA+       S++   N  KI ++S+ I    AGSAAD + L
Sbjct: 1   TTIVGIKGKDGVVLAADTRASA-----GSLVASRNFDKIFKISDNILLGTAGSAADTQAL 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSI 122
           + L++ NL     +   ++ V     ++   LY Y G+    + I+GG+D  GG  L+ +
Sbjct: 56  TRLLKRNLRLYELRNGRELSVKAAANLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYV 115

Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKV 182
              GS     F A G+G + A GIL+ G+K +++ +E + L+  AI + I  DL SG  V
Sbjct: 116 DPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKKAIDSAIERDLSSGGGV 175

Query: 183 DVTIIRKNG 191
           DV +I K+G
Sbjct: 176 DVAVITKDG 184

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189

>gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit

 Score =  149 bits (378), Expect = 6e-45
 Identities = 63/190 (33%), Positives = 90/190 (47%), Gaps = 8/190 (4%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTI G+  +DGV+L AD RAT     GS +L      KI ++ + I    AG AAD +
Sbjct: 3   TGTTIVGIKGKDGVVLAADKRATR----GSKLLSKDTVEKIFKIDDHIGMAFAGLAADAQ 58

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPV----TMIKQTLYKYHGYLMCAFIIGGIDSAGGN 117
            L     A  +    +    I V         +   T Y        + +I G D  GG 
Sbjct: 59  TLVDYARAEAQLYRLRYGRPISVELAKRIADKLQAYTQYSGRRPYGVSLLIAGYDEDGGP 118

Query: 118 QLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLG 177
            L+SI   GS   +K  A+G+G Q A G LE  +K +++ +E + L V A+K  I  D  
Sbjct: 119 HLYSIDPSGSVIEYKATAIGSGSQYAYGFLEKLYKPDMTLEEAVELAVKALKEAIERDAL 178

Query: 178 SGSKVDVTII 187
           SG  ++V +I
Sbjct: 179 SGGNIEVAVI 188

The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria. The second is call beta-proteobacteria proteasome homologue (BPH). Length = 188

>gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV

 Score =  146 bits (371), Expect = 6e-44
 Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 8/187 (4%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI G+  +DGV+L AD R T        ++      KI ++ + I C  AG AAD + L
Sbjct: 1   TTIVGIKGKDGVVLAADKRVTSG-----LLVASSTVEKIFKIDDHIGCAFAGLAADAQTL 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY---LMCAFIIGGIDSAGGNQLF 120
              +    +    +    IPV     ++   LY+Y      L  + ++ G+D  GG QL+
Sbjct: 56  VERLRKEAQLYRLRYGEPIPVEALAKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLY 115

Query: 121 SIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGS 180
           S+   GS   +K  A+G+G Q A+GILE  +K +++ +E + L + A+K+ +  DL SG 
Sbjct: 116 SVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELALKALKSALERDLYSGG 175

Query: 181 KVDVTII 187
            ++V +I
Sbjct: 176 NIEVAVI 182

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleophilic threonine that is exposed by post-translational processing of an inactive propeptide. Length = 182

>gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

 Score =  128 bits (323), Expect = 3e-36
 Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 13/206 (6%)

Query: 1   MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
             GTT  G+  +DGV+L AD RAT        ++   N  KI ++ + I    AG AAD 
Sbjct: 28  RGGTTTVGIKGKDGVVLAADKRATSG-----LLIASSNVEKIFKIDDHIGMAIAGLAADA 82

Query: 61  KRLSGLVEANLECQFPKAHT--DIPVICPVTMIKQTLYKYHGY---LMCAFIIGGIDSAG 115
           + L     A  E Q  +      I V     ++   L +Y         + ++ G+D  G
Sbjct: 83  QVLVRYARA--EAQLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-G 139

Query: 116 GNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYD 175
           G +L+S    GS + +K  A+G+G Q A G LE  ++E+LS +E + L V A++A I  D
Sbjct: 140 GPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERD 199

Query: 176 LGSGSKVDVTIIRKNGQVSSYKPYKV 201
             SG  ++V +I K+         ++
Sbjct: 200 AASGGGIEVAVITKDEGFRKLDGEEI 225

Length = 236

>gnl|CDD|234287 TIGR03634, arc_protsome_B, proteasome endopeptidase complex, archaeal, beta subunit

 Score =  111 bits (280), Expect = 2e-30
 Identities = 57/190 (30%), Positives = 97/190 (51%), Gaps = 7/190 (3%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           GTT  G+  +DGV+L AD RA+M    G+ +    N  K+ ++ + I    AGS  D + 
Sbjct: 1   GTTTVGIKCKDGVVLAADKRASM----GNFVA-SKNAKKVFQIDDYIAMTIAGSVGDAQS 55

Query: 63  LSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFS 121
           L  +++A  +    +    + V    T++   L     +  +   ++GG+D  G   L+S
Sbjct: 56  LVRILKAEAKLYELRRGRPMSVKALATLLSNILNSNRFFPFIVQLLVGGVDEEGP-HLYS 114

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           +   G      + A G+G   A G+LE  ++E++S +E   L V AIK+ I  D+ SG+ 
Sbjct: 115 LDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLAVRAIKSAIERDVASGNG 174

Query: 182 VDVTIIRKNG 191
           +DV +I K+G
Sbjct: 175 IDVAVITKDG 184

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 185

>gnl|CDD|239733 cd03764, proteasome_beta_archeal, Archeal proteasome, beta subunit

 Score =  111 bits (279), Expect = 3e-30
 Identities = 63/190 (33%), Positives = 100/190 (52%), Gaps = 9/190 (4%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TT  G++ +DGV+L AD RA+M    G+ I    N  KI ++ +KI    AGS  D + L
Sbjct: 1   TTTVGIVCKDGVVLAADKRASM----GNFIA-SKNVKKIFQIDDKIAMTIAGSVGDAQSL 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTL--YKYHGYLMCAFIIGGIDSAGGNQLFS 121
             +++A       +    + +    T++   L   KY  Y++   +IGG+D  G   L+S
Sbjct: 56  VRILKAEARLYELRRGRPMSIKALATLLSNILNSSKYFPYIV-QLLIGGVDEEGP-HLYS 113

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           +   GS    K+ A G+G   A G+LE  +KE+++ +E   L + AIK+ I  D  SG  
Sbjct: 114 LDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIRAIKSAIERDSASGDG 173

Query: 182 VDVTIIRKNG 191
           +DV +I K+G
Sbjct: 174 IDVVVITKDG 183

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|239731 cd03762, proteasome_beta_type_6, proteasome beta type-6 subunit

 Score =  104 bits (262), Expect = 1e-27
 Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 9/190 (4%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI  + Y+ GV+LGAD+R +       S + +    K+ +L ++IYCC +GSAAD + +
Sbjct: 1   TTIIAVEYDGGVVLGADSRTST-----GSYVANRVTDKLTQLHDRIYCCRSGSAADTQAI 55

Query: 64  SGLVEANLECQFPKAHTDIP--VICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
           +  V   L           P  V    ++ K   Y Y   L    I+ G D   G Q++S
Sbjct: 56  ADYVRYYL--DMHSIELGEPPLVKTAASLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYS 113

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           I   G      F   G+G     G ++A +K  ++ +E +  + +A+   +  D  SG  
Sbjct: 114 IPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNALSLAMSRDGSSGGV 173

Query: 182 VDVTIIRKNG 191
           + + II K+G
Sbjct: 174 IRLVIITKDG 183

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|238884 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

 Score =  104 bits (260), Expect = 1e-27
 Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 9/170 (5%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           +T   +  + GV+L AD R +         +      KI +  + I    AG AAD + L
Sbjct: 1   STSVAIKGKGGVVLAADKRLSSG-----LPVAGSPVIKIGKNEDGIAWGLAGLAADAQTL 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKY--HGYLMCAFIIGGIDSAGGNQLFS 121
              +   L+    +    I V+     + + L  Y          I+ G+D  GG  L+ 
Sbjct: 56  VRRLREALQLYRLRYGEPISVVALAKELAKLLQVYTQGRPFGVNLIVAGVDEGGG-NLYY 114

Query: 122 IFQHGSSHGH-KFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKA 170
           I   G    +    A G+  Q A  +LE  +K +++ +E + L + A+K+
Sbjct: 115 IDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELALKALKS 164

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either the nucleophilic hydroxyl in a Ser or Thr residue or the nucleophilic thiol in a Cys residue. The position of the N-terminal nucleophile in the active site and the mechanism of catalysis are conserved in this family, despite considerable variation in the protein sequences. Length = 164

>gnl|CDD|238892 cd01911, proteasome_alpha, proteasome alpha subunit

 Score = 76.7 bits (190), Expect = 5e-17
 Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 20/194 (10%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           G+T  G+  +DGV+L  + + T K    SS+       KI ++ + I C  AG  AD + 
Sbjct: 27  GSTAVGIKGKDGVVLAVEKKVTSKLLDPSSV------EKIFKIDDHIGCAVAGLTADARV 80

Query: 63  LSGLVE-ANLECQ--FPKAHTDIPV--IC-PVTMIKQTLYKYHGYLM---CAFIIGGIDS 113
           L   V  A +E Q         IPV  +   +  + Q +Y  +G +     + +I G D 
Sbjct: 81  L---VNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQ-VYTQYGGVRPFGVSLLIAGYDE 136

Query: 114 AGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGIL 173
            GG QL+     G+  G+K  A+G G Q A   LE  +K++L+ +E + L + A+K  + 
Sbjct: 137 EGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLE 196

Query: 174 YDLGSGSKVDVTII 187
            D      +++ ++
Sbjct: 197 EDK-KAKNIEIAVV 209

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each. Length = 209

>gnl|CDD|239725 cd03756, proteasome_alpha_archeal, proteasome_alpha_archeal

 Score = 70.1 bits (172), Expect = 2e-14
 Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 21/194 (10%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           GTT  G+  ++GV+L  D R T K     SI       KI ++ + +    +G  AD + 
Sbjct: 28  GTTALGIKCKEGVVLAVDKRITSKLVEPESI------EKIYKIDDHVGAATSGLVADARV 81

Query: 63  LSGLVE-ANLECQFPKAHTDIPV-----ICPVTMIKQTLYKYHGYLM---CAFIIGGIDS 113
           L   ++ A +E Q  +     P+     +  +  +KQ  Y  HG +     A +I G+D 
Sbjct: 82  L---IDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQ-YTQHGGVRPFGVALLIAGVDD 137

Query: 114 AGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGIL 173
            GG +LF     G+ + +K  A+G+G Q     LE  +KE++S +E + L + A+ A + 
Sbjct: 138 -GGPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKEDMSLEEAIELALKALYAAL- 195

Query: 174 YDLGSGSKVDVTII 187
            +  +   V++  +
Sbjct: 196 EENETPENVEIAYV 209

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 211

>gnl|CDD|239727 cd03758, proteasome_beta_type_2, proteasome beta type-2 subunit

 Score = 66.1 bits (162), Expect = 3e-13
 Identities = 41/193 (21%), Positives = 83/193 (43%), Gaps = 14/193 (7%)

Query: 5   TICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLS 64
           T+ G+  +D VIL ADT A     + S +++  +  KI +LS+      +G A D  + +
Sbjct: 3   TLIGIKGKDFVILAADTSA-----ARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFA 57

Query: 65  GLVEANLECQFPKAHTDIPVICPVTMIKQTLYKY---HGYLMCAFIIGGIDSAGGNQLFS 121
             ++ N++    +   ++         ++ L +            ++ G D   G  L+ 
Sbjct: 58  EYIQKNIQLYKMRNGYELSPKAAANFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYY 117

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLM---VDAIKAGILYDLGS 178
           I   G+     + A G G    + IL+  +K +++ +E L LM   +  +K   + +L  
Sbjct: 118 IDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALELMKKCIKELKKRFIINL-- 175

Query: 179 GSKVDVTIIRKNG 191
                V ++ K+G
Sbjct: 176 -PNFTVKVVDKDG 187

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 193

>gnl|CDD|163366 TIGR03633, arc_protsome_A, proteasome endopeptidase complex, archaeal, alpha subunit

 Score = 66.1 bits (162), Expect = 5e-13
 Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 25/196 (12%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           GTT  G+  +DGV+L  D R T K    SSI       KI ++ + I    +G  AD + 
Sbjct: 29  GTTAVGIKTKDGVVLAVDKRITSKLVEPSSI------EKIFKIDDHIGAATSGLVADARV 82

Query: 63  LSGLVE-ANLECQFPKAHTDIPVICPVTM-------IKQTLYKYHGYLM---CAFIIGGI 111
           L   ++ A +E Q  +     P+   V         +KQ  Y  HG +     A +I G+
Sbjct: 83  L---IDRARIEAQINRLTYGEPI--DVETLAKKICDLKQQ-YTQHGGVRPFGVALLIAGV 136

Query: 112 DSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAG 171
           D  GG +LF     G+   +K  A+G G Q     LE  ++E+LS  E + L + A+ + 
Sbjct: 137 DD-GGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSLDEAIELALKALYSA 195

Query: 172 ILYDLGSGSKVDVTII 187
            + D  +   V+V  I
Sbjct: 196 -VEDKLTPENVEVAYI 210

This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 224

>gnl|CDD|239730 cd03761, proteasome_beta_type_5, proteasome beta type-5 subunit

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 23/197 (11%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TT    +++ GVI+  D+RAT      S  +      K+  ++  +    AG AAD +  
Sbjct: 1   TTTLAFIFQGGVIVAVDSRATAGSYIASQTV-----KKVIEINPYLLGTMAGGAADCQ-- 53

Query: 64  SGLVEANL--ECQFPKAH-----TDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAG 115
               E  L  EC   + +       I V     ++   LY+Y G  L    +I G D  G
Sbjct: 54  --YWERVLGREC---RLYELRNKERISVAAASKLLSNMLYQYKGMGLSMGTMICGWDKTG 108

Query: 116 GNQLFSIFQHGS-SHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILY 174
              L+ +   G+   G  F   G+G   A G+L++G++ +LS +E   L   AI      
Sbjct: 109 PG-LYYVDSDGTRLKGDLFSV-GSGSTYAYGVLDSGYRYDLSVEEAYDLARRAIYHATHR 166

Query: 175 DLGSGSKVDVTIIRKNG 191
           D  SG  V++  +R++G
Sbjct: 167 DAYSGGNVNLYHVREDG 183

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|173491 PTZ00246, PTZ00246, proteasome subunit alpha; Provisional

 Score = 64.1 bits (156), Expect = 4e-12
 Identities = 60/208 (28%), Positives = 95/208 (45%), Gaps = 21/208 (10%)

Query: 8   GLLYEDGVILGADTRATMKDASGSSILID--HNCSKINRLSEKIYCCGAGSAADMKRLSG 65
           G+L ++GVILGAD          SS L+D      KI ++   I+C  AG  AD   L  
Sbjct: 36  GILCKEGVILGADKPI-------SSKLLDPGKINEKIYKIDSHIFCAVAGLTADANIL-- 86

Query: 66  LVEANLECQ-FPKAHTDI-PVICPVTMI---KQTLYKYHGY--LMCAFIIGGIDSAGGNQ 118
           + +  L  Q +   + +  PV   V  I   KQ+  ++ G      +F+  G D   G Q
Sbjct: 87  INQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQ 146

Query: 119 LFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGS 178
           L+     G+  G K  A+G   Q A  IL+  WKE+L+ ++GL L    +   +      
Sbjct: 147 LYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPK 206

Query: 179 GSKVDVTIIRKNGQVSSYKPY-KVLSDR 205
             K++V I+      +  +P  K+LS++
Sbjct: 207 ADKIEVGILSHGE--TDGEPIQKMLSEK 232

Length = 253

>gnl|CDD|239729 cd03760, proteasome_beta_type_4, proteasome beta type-4 subunit

 Score = 60.3 bits (147), Expect = 3e-11
 Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 41/211 (19%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGT++  + Y+DGVI+ ADT       S  S+    N  +I ++ +      +G  AD  
Sbjct: 1   TGTSVIAIKYKDGVIIAADTLG-----SYGSLARFKNVERIFKVGDNTLLGASGDYADF- 54

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYK---YHGYL--------------MC 104
                       Q+ K   D  VI    +           H YL                
Sbjct: 55  ------------QYLKRLLDQLVIDDECLDDGHSLSPKEIHSYLTRVLYNRRSKMNPLWN 102

Query: 105 AFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE--NLSEKEGLT 162
             ++GG+D+ G   L  +   G+++     A G G   A+ +L   W++  +L+E+E   
Sbjct: 103 TLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEARA 162

Query: 163 LMVDAIKAGILY--DLGSGSKVDVTIIRKNG 191
           L+ + +K  +LY  D  S +K  + ++ K G
Sbjct: 163 LIEECMK--VLYYRDARSINKYQIAVVTKEG 191

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 197

>gnl|CDD|235192 PRK03996, PRK03996, proteasome subunit alpha; Provisional

 Score = 59.8 bits (146), Expect = 1e-10
 Identities = 55/179 (30%), Positives = 80/179 (44%), Gaps = 24/179 (13%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           GTT  G+  +DGV+L  D R T      SSI       KI ++ + I    AG  AD + 
Sbjct: 36  GTTAVGVKTKDGVVLAVDKRITSPLIEPSSI------EKIFKIDDHIGAASAGLVADARV 89

Query: 63  LSGLVE-ANLECQFPKAHTDIPVICPVTM-------IKQTLYKYHGYLM---CAFIIGGI 111
           L   ++ A +E Q  +     P+   V          KQ  Y  HG +     A +I G+
Sbjct: 90  L---IDRARVEAQINRLTYGEPI--GVETLTKKICDHKQQ-YTQHGGVRPFGVALLIAGV 143

Query: 112 DSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKA 170
           D  GG +LF     G+   +K  A+G G    M  LE  +KE+LS +E + L + A+  
Sbjct: 144 DD-GGPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAK 201

Length = 241

>gnl|CDD|239721 cd03752, proteasome_alpha_type_4, proteasome_alpha_type_4

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 53/178 (29%), Positives = 83/178 (46%), Gaps = 24/178 (13%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCS--KINRLSEKIYCCGAGSAADM 60
           GT + G+L +DG++L A+ + T K       L+D + S  KI ++ + I C  AG  +D 
Sbjct: 30  GTCL-GILAKDGIVLAAEKKVTSK-------LLDQSFSSEKIYKIDDHIACAVAGITSDA 81

Query: 61  KRLSGLVEANLECQ--FPKAHTDIPVICPVTMI---KQTLYKYHGYLM---CAFIIGGID 112
             L  +  A L  Q         IPV   V  +   KQ  Y  +G L     +F+  G D
Sbjct: 82  NIL--INYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQ-GYTQYGGLRPFGVSFLYAGWD 138

Query: 113 SAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKA 170
              G QL+     G+  G K  A+G   Q A  +L+  +K++++ +E L L   A+K 
Sbjct: 139 KHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKDDMTLEEALAL---AVKV 193

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 213

>gnl|CDD|185666 PTZ00488, PTZ00488, Proteasome subunit beta type-5; Provisional

 Score = 56.5 bits (136), Expect = 1e-09
 Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 13/195 (6%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           GTT     Y  G+I+  D++AT         +   +  K+  ++  +    AG AAD   
Sbjct: 39  GTTTLAFKYGGGIIIAVDSKAT-----AGPYIASQSVKKVIEINPTLLGTMAGGAADCSF 93

Query: 63  LSGLVEANLECQFPKAHTD--IPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQL 119
                E  ++C+  +      I V     ++   ++ Y G  L    +I G D  G   L
Sbjct: 94  WER--ELAMQCRLYELRNGELISVAAASKILANIVWNYKGMGLSMGTMICGWDKKG-PGL 150

Query: 120 FSIFQHGSS-HGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGS 178
           F +   G+  HG+ F + G+G   A G+L+AG+K +L+++E   L   AI      D  S
Sbjct: 151 FYVDNDGTRLHGNMF-SCGSGSTYAYGVLDAGFKWDLNDEEAQDLGRRAIYHATFRDAYS 209

Query: 179 GSKVDVTIIRKNGQV 193
           G  +++  ++K+G  
Sbjct: 210 GGAINLYHMQKDGWK 224

Length = 247

>gnl|CDD|239726 cd03757, proteasome_beta_type_1, proteasome beta type-1 subunit

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 29/206 (14%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           G T+  +   D  ++  DTR +     G SIL   +  KI +L++K     +G  AD+  
Sbjct: 8   GGTVLAIAGNDFAVIAGDTRLSE----GYSIL-SRDSPKIFKLTDKCVLGSSGFQADILA 62

Query: 63  LSGLVEANLECQFPKAHT---DIPVICPVTMIKQTLYK-----YHGYLMCAFIIGGIDSA 114
           L+  ++A ++  +  +H        I    ++   LY      Y  Y+    I+ GID  
Sbjct: 63  LTKRLKARIK-MYKYSHNKEMSTEAI--AQLLSTILYSRRFFPY--YVFN--ILAGIDEE 115

Query: 115 GGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILE---------AGWKENLSEKEGLTLMV 165
           G   ++S    GS     + A G+       +L+            +  LS +E ++L+ 
Sbjct: 116 GKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVERTPLSLEEAVSLVK 175

Query: 166 DAIKAGILYDLGSGSKVDVTIIRKNG 191
           DA  +    D+ +G  +++ II K+G
Sbjct: 176 DAFTSAAERDIYTGDSLEIVIITKDG 201

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 212

>gnl|CDD|239728 cd03759, proteasome_beta_type_3, proteasome beta type-3 subunit

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 39/196 (19%), Positives = 79/196 (40%), Gaps = 7/196 (3%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
            G  +  +  +D V + +D R  +         +  +  K+ R+ +++Y   AG A D++
Sbjct: 2   NGGAVVAMAGKDCVAIASDLRLGV-----QQQTVSTDFQKVFRIGDRLYIGLAGLATDVQ 56

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLY-KYHGYLMCAFIIGGIDSAGGNQLF 120
            L+  +   +     +   +I      ++I   LY K  G      ++ G+D  G   + 
Sbjct: 57  TLAQKLRFRVNLYRLREEREIKPKTFSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFIC 116

Query: 121 SIFQHGS-SHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSG 179
           ++   G  S    F   GT  +   G+ E+ W+ ++   E    +  A+ + +  D  SG
Sbjct: 117 TMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFETISQALLSAVDRDALSG 176

Query: 180 SKVDVTIIRKNGQVSS 195
               V II K+   + 
Sbjct: 177 WGAVVYIITKDKVTTR 192

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 195

>gnl|CDD|239724 cd03755, proteasome_alpha_type_7, proteasome_alpha_type_7

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 30/198 (15%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           GTT  G+  +D V+LG + ++  K     ++       KI  L + +    AG  AD + 
Sbjct: 27  GTTAVGVRGKDCVVLGVEKKSVAKLQDPRTV------RKICMLDDHVCLAFAGLTADARV 80

Query: 63  LSGLVEANLECQFPKAHTDIPVICPVTMIK----QTLYKY--------HGYLMCAFIIGG 110
           L  +  A LECQ  +   + PV   V  I         +Y         G    + +I G
Sbjct: 81  L--INRARLECQSHRLTVEDPV--TVEYITRYIAGLQQRYTQSGGVRPFG---ISTLIVG 133

Query: 111 IDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKA 170
            D  G  +L+     G+    K  A+G   +     LE  +KE ++  + + L   AIKA
Sbjct: 134 FDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYKEEMTRDDTIKL---AIKA 190

Query: 171 GILYDLGSGSK-VDVTII 187
            +L  + SGSK +++ ++
Sbjct: 191 -LLEVVQSGSKNIELAVM 207

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 207

>gnl|CDD|239722 cd03753, proteasome_alpha_type_5, proteasome_alpha_type_5

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 40/182 (21%), Positives = 78/182 (42%), Gaps = 27/182 (14%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           G+T  G+  ++GV+L  + R T      S ++   +  KI  + + I C  +G  AD + 
Sbjct: 27  GSTAIGIKTKEGVVLAVEKRIT------SPLMEPSSVEKIMEIDDHIGCAMSGLIADART 80

Query: 63  LSGLVEANLECQFPKAHTDIPV--------ICPV-------TMIKQTLYKYHGYLMCAFI 107
           L  +  A +E Q  +   + P+        +  +          K+ + +  G    A +
Sbjct: 81  L--IDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFG---VALL 135

Query: 108 IGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDA 167
           I G+D   G QLF     G+       A+G+G + A   L+  + ++++ +E   L +  
Sbjct: 136 IAGVDE-NGPQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSI 194

Query: 168 IK 169
           +K
Sbjct: 195 LK 196

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 213

>gnl|CDD|239719 cd03750, proteasome_alpha_type_2, proteasome_alpha_type_2

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 45/198 (22%), Positives = 78/198 (39%), Gaps = 19/198 (9%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILID-HNCSKINRLSEKIYCCGAGSAADMK 61
           G    G+   +GV+L     AT K     S LID  +  K+ +++  I    +G   D +
Sbjct: 27  GAPSVGIKAANGVVL-----ATEKKVP--SPLIDESSVHKVEQITPHIGMVYSGMGPDFR 79

Query: 62  RLSGLVEANLECQ--FPKAHTDIPVICPVTMIKQTLYKYH---GY--LMCAFIIGGIDSA 114
            L  + +A    Q  +      IPV   V  I   + +Y    G      + +I G D  
Sbjct: 80  VL--VKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDE- 136

Query: 115 GGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILY 174
           GG  L+ +   GS    K  A+G     A   LE  + E+L  ++ +   +  +K G   
Sbjct: 137 GGPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEG 196

Query: 175 DLGSGSKVDVTIIRKNGQ 192
            + +   +++ I  +   
Sbjct: 197 QM-TEKNIEIGICGETKG 213

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 227

>gnl|CDD|239720 cd03751, proteasome_alpha_type_3, proteasome_alpha_type_3

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 50/170 (29%), Positives = 76/170 (44%), Gaps = 25/170 (14%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSK-INRLSEKIYCCGAGSAADMK 61
           GT I G+  +DGV+L  +   T       S L +   +K I  +   I    AG  AD +
Sbjct: 31  GTAI-GIRCKDGVVLAVEKLVT-------SKLYEPGSNKRIFNVDRHIGIAVAGLLADGR 82

Query: 62  RLSGLVE-ANLECQFPKAHTDIPVICPVTMIKQTLYKY-HGYLM--------CAFIIGGI 111
            L   V  A  E +  + +   P+  PV ++   +  Y H Y +        C+ ++GG 
Sbjct: 83  HL---VSRAREEAENYRDNYGTPI--PVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGY 137

Query: 112 DSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGL 161
           DS G  QL+ I   G S+G+  CA+G G Q A   LE      L+ +E +
Sbjct: 138 DSDGP-QLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSELTCREAV 186

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 212

>gnl|CDD|163402 TIGR03690, 20S_bact_beta, proteasome, beta subunit, bacterial type

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 54/195 (27%), Positives = 78/195 (40%), Gaps = 48/195 (24%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIY------CCG--- 53
           GTTI  L Y  GV++  D RAT     G+ I         +R  EK+Y        G   
Sbjct: 2   GTTIVALTYPGGVLMAGDRRATQ----GNMI--------ASRDVEKVYPTDEYSAVGIAG 49

Query: 54  -AGSAADMKRLSGLVEANLECQFPKAHTDIPVICPVT----------MIKQTL-YKYHGY 101
            AG A ++ RL   VE  LE  + K         P+T          M++  L     G 
Sbjct: 50  TAGLAIELVRLFQ-VE--LE-HYEKIEG-----VPLTLDGKANRLAAMVRGNLPAAMQGL 100

Query: 102 LMCAFIIGGIDSAGGNQLFSI-FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEG 160
            +   + G    AG  ++FS     G      + A+G+G   A G L+  +  +L E + 
Sbjct: 101 AVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDA 160

Query: 161 LTLMVDAIKAGILYD 175
           L + V+A     LYD
Sbjct: 161 LRVAVEA-----LYD 170

Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 219

>gnl|CDD|238894 cd01913, protease_HslV, Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 4  TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSE-KIYCCGAGSAADMKR 62
          TTI  +     V++  D + T+    G++++   N  K+ RL   K+    AGS AD   
Sbjct: 1  TTILAVRKNGKVVIAGDGQVTL----GNTVM-KGNARKVRRLYNGKVIAGFAGSTADAFT 55

Query: 63 LSGLVEANLECQFP 76
          L    EA LE Q+P
Sbjct: 56 LFERFEAKLE-QYP 68

HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis. Length = 171

>gnl|CDD|239723 cd03754, proteasome_alpha_type_6, proteasome_alpha_type_6

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 13/147 (8%)

Query: 34  LID-HNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQ--FPKAHTDIPV---ICP 87
           LID    + + R++++I C   G  AD +    +  A  E      K   ++PV      
Sbjct: 53  LIDPSTVTHLFRITDEIGCVMTGMIADSRSQ--VQRARYEAAEFKYKYGYEMPVDVLAKR 110

Query: 88  VTMIKQTLYKYHGYLM---CAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAM 144
           +  I Q +Y  H Y+     + I+ GID   G QL+     G   G+K  A G   Q A 
Sbjct: 111 IADINQ-VYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEAT 169

Query: 145 GILEAGWKENLSEKEGLTLMVD-AIKA 170
             LE   K+     E     V+ AI  
Sbjct: 170 NFLEKKLKKKPDLIESYEETVELAISC 196

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 215

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	260
KOG0173|consensus	271		100.0
COG0638	236	PRE1 20S proteasome, alpha and beta subunits [Post	100.0
cd03759	195	proteasome_beta_type_3 proteasome beta type-3 subu	100.0
cd03761	188	proteasome_beta_type_5 proteasome beta type-5 subu	100.0
cd03763	189	proteasome_beta_type_7 proteasome beta type-7 subu	100.0
cd03760	197	proteasome_beta_type_4 proteasome beta type-4 subu	100.0
cd03758	193	proteasome_beta_type_2 proteasome beta type-2 subu	100.0
PTZ00488	247	Proteasome subunit beta type-5; Provisional	100.0
cd03757	212	proteasome_beta_type_1 proteasome beta type-1 subu	100.0
cd03762	188	proteasome_beta_type_6 proteasome beta type-6 subu	100.0
TIGR03634	185	arc_protsome_B proteasome endopeptidase complex, a	100.0
cd03764	188	proteasome_beta_archeal Archeal proteasome, beta s	100.0
cd03750	227	proteasome_alpha_type_2 proteasome_alpha_type_2. T	100.0
TIGR03690	219	20S_bact_beta proteasome, beta subunit, bacterial	100.0
cd03765	236	proteasome_beta_bacterial Bacterial proteasome, be	100.0
cd01912	189	proteasome_beta proteasome beta subunit. The 20S p	100.0
PTZ00246	253	proteasome subunit alpha; Provisional	100.0
TIGR03633	224	arc_protsome_A proteasome endopeptidase complex, a	100.0
cd03755	207	proteasome_alpha_type_7 proteasome_alpha_type_7. T	100.0
KOG0176|consensus	241		100.0
cd03752	213	proteasome_alpha_type_4 proteasome_alpha_type_4. T	100.0
cd03751	212	proteasome_alpha_type_3 proteasome_alpha_type_3. T	100.0
PRK03996	241	proteasome subunit alpha; Provisional	100.0
cd03749	211	proteasome_alpha_type_1 proteasome_alpha_type_1. T	100.0
cd03753	213	proteasome_alpha_type_5 proteasome_alpha_type_5. T	100.0
cd03756	211	proteasome_alpha_archeal proteasome_alpha_archeal.	100.0
cd01906	182	proteasome_protease_HslV proteasome_protease_HslV.	100.0
cd01911	209	proteasome_alpha proteasome alpha subunit. The 20S	100.0
PF00227	190	Proteasome: Proteasome subunit; InterPro: IPR00135	100.0
cd03754	215	proteasome_alpha_type_6 proteasome_alpha_type_6. T	100.0
TIGR03691	228	20S_bact_alpha proteasome, alpha subunit, bacteria	100.0
KOG0183|consensus	249		100.0
KOG0185|consensus	256		100.0
KOG0175|consensus	285		100.0
KOG0181|consensus	233		100.0
KOG0174|consensus	224		100.0
KOG0178|consensus	249		100.0
PRK05456	172	ATP-dependent protease subunit HslV; Provisional	100.0
cd01913	171	protease_HslV Protease HslV and the ATPase/chapero	100.0
KOG0179|consensus	235		100.0
TIGR03692	171	ATP_dep_HslV ATP-dependent protease HslVU, peptida	100.0
KOG0177|consensus	200		100.0
KOG0184|consensus	254		100.0
KOG0863|consensus	264		100.0
KOG0182|consensus	246		100.0
KOG0180|consensus	204		99.97
cd01901	164	Ntn_hydrolase The Ntn hydrolases (N-terminal nucle	99.97
COG5405	178	HslV ATP-dependent protease HslVU (ClpYQ), peptida	99.62
COG3484	255	Predicted proteasome-type protease [Posttranslatio	99.37
PF12465	38	Pr_beta_C: Proteasome beta subunits C terminal ; I	97.75
PF09894	194	DUF2121: Uncharacterized protein conserved in arch	96.51
COG4079	293	Uncharacterized protein conserved in archaea [Func	93.4
KOG3361|consensus	157		92.33

>KOG0173|consensus

Probab=100.00  E-value=2.2e-60  Score=407.58  Aligned_cols=225  Identities=42%  Similarity=0.732  Sum_probs=221.0

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      |||||+||.||||||++||+|+|.     |+++.+++|+|||.|.++|+||++|.+||.+.+++++..++++|++++++.
T Consensus        36 TGTtIvgv~~k~gvIlgADtRaT~-----G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~  110 (271)
T KOG0173|consen   36 TGTTIVGVIFKDGVILGADTRATE-----GPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRK  110 (271)
T ss_pred             cCcEEEEEEeCCeEEEeecccccC-----CCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCC
Confidence            799999999999999999999999     999999999999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHH
Q psy15384         82 IPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGL  161 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai  161 (260)
                      ++|..+.++|+|+||+|+|+++++||+||+|.+| ||||++.|+|+....+|+++|||++.|+++||.+|+|+|++|||+
T Consensus       111 ~rVv~A~~mlkQ~LFrYqG~IgA~LiiGGvD~TG-pHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt~eea~  189 (271)
T KOG0173|consen  111 PRVVTALRMLKQHLFRYQGHIGAALILGGVDPTG-PHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLTKEEAI  189 (271)
T ss_pred             CceeeHHHHHHHHHHHhcCcccceeEEccccCCC-CceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccCHHHHH
Confidence            9999999999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccccccCCCCCcceeeeeeeeccccc
Q psy15384        162 TLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKP  233 (260)
Q Consensus       162 ~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~~  233 (260)
                      +|+.+|+.+++++|++||+||++|||++.+ ++++++|..++.+..|+.+|.|++|+|.++++.|.++..+.
T Consensus       190 ~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~-~~~lr~~~~~~~~~~r~~~y~~~~gtT~VL~~~v~~l~~~~  260 (271)
T KOG0173|consen  190 KLVCEAIAAGIFNDLGSGSNVDLCVITKKG-VEYLRNYSRPNEKGERTGRYKFKPGTTAVLKEKVYPLLVEV  260 (271)
T ss_pred             HHHHHHHHhhhccccCCCCceeEEEEeCCC-ccccccCCCCCCCccccceeeeCCCceEEEeeeeeeeeeee
Confidence            999999999999999999999999999777 99999999999999999999999999999999999996654

>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-47  Score=337.32  Aligned_cols=196  Identities=31%  Similarity=0.420  Sum_probs=186.9

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.++     |.++..++++|||+|+|||+|++||+.||++.++++++.+++.|++.++++
T Consensus        29 ~gtT~vgik~~dgVVlaadkr~t~-----~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~  103 (236)
T COG0638          29 GGTTTVGIKGKDGVVLAADKRATS-----GLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEP  103 (236)
T ss_pred             CCceEEEEEecCEEEEEEeccCCC-----CceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCC
Confidence            479999999999999999999999     899999999999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhcc---CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHH
Q psy15384         82 IPVICPVTMIKQTLYKYH---GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEK  158 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~~---~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~e  158 (260)
                      ++++.++++|++++++++   +||++++||||+|+ ++|+||++||+|++.+++++|+|+|+..|+++||++|+++|++|
T Consensus       104 i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y~~~m~~e  182 (236)
T COG0638         104 ISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYREDLSLE  182 (236)
T ss_pred             CCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcC-CCCeEEEECCCCceeecCEEEEcCCcHHHHHHHHhhccCCCCHH
Confidence            999999999999999986   59999999999998 66999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccC
Q psy15384        159 EGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLS  203 (260)
Q Consensus       159 eai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~  203 (260)
                      ||++++++||+++++||..++++++|++|+++.+++.+.++++..
T Consensus       183 eai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~~~~~  227 (236)
T COG0638         183 EAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIKK  227 (236)
T ss_pred             HHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHHHHHH
Confidence            999999999999999999889999999999943399887776653

>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit

Probab=100.00  E-value=5.9e-47  Score=324.34  Aligned_cols=189  Identities=20%  Similarity=0.302  Sum_probs=179.4

Q ss_pred             CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCC
Q psy15384          1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHT   80 (260)
Q Consensus         1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~   80 (260)
                      .+|+|+|||+++||||||+|+|.+.     +.++.+++++||++|++|++|++||..+|++.++++++.+++.|+++++.
T Consensus         1 ~~G~t~igik~~dgVvlaad~~~~~-----~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~   75 (195)
T cd03759           1 YNGGAVVAMAGKDCVAIASDLRLGV-----QQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREER   75 (195)
T ss_pred             CCCceEEEEEcCCEEEEEEcccccc-----CCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3799999999999999999999998     67777888999999999999999999999999999999999999999999


Q ss_pred             CCChHhHHHHHHHHHHhc-cCcceeeEEEEEEeCCCCceEEEEeecceEEeeC-EEEEcCChHHHHHHHHhccCCCCCHH
Q psy15384         81 DIPVICPVTMIKQTLYKY-HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHK-FCAMGTGLQPAMGILEAGWKENLSEK  158 (260)
Q Consensus        81 ~i~v~~l~~~l~~~l~~~-~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~-~~aiGsgs~~a~~~Le~~y~~~ms~e  158 (260)
                      +++++.++++|++++|++ .+||++++||||||++++|+||++||+|++..++ ++|+|+|+..++++||+.|+++||++
T Consensus        76 ~~~~~~la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~  155 (195)
T cd03759          76 EIKPKTFSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPD  155 (195)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHH
Confidence            999999999999998865 4699999999999987779999999999999888 99999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEE
Q psy15384        159 EGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSS  195 (260)
Q Consensus       159 eai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~  195 (260)
                      ||++++++||+.+.+||..++++++|++|+++| ++.
T Consensus       156 ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g-~~~  191 (195)
T cd03759         156 ELFETISQALLSAVDRDALSGWGAVVYIITKDK-VTT  191 (195)
T ss_pred             HHHHHHHHHHHHHHhhCcccCCceEEEEEcCCc-EEE
Confidence            999999999999999999999999999999998 653

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit

Probab=100.00  E-value=8.5e-47  Score=321.60  Aligned_cols=186  Identities=25%  Similarity=0.389  Sum_probs=179.7

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+++||||||+|+|.++     |.++.+++++|||+|++|++|++||+.+|++.++++++.+++.|+++++++++
T Consensus         1 tT~igi~~kdgVvla~d~r~~~-----~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~   75 (188)
T cd03761           1 TTTLAFIFQGGVIVAVDSRATA-----GSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERIS   75 (188)
T ss_pred             CcEEEEEECCEEEEEEcCCccC-----CcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            6999999999999999999999     89999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhccC-cceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHH
Q psy15384         84 VICPVTMIKQTLYKYHG-YLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLT  162 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~~-p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~  162 (260)
                      ++.++++|++++|+++. ||++++||||||++| |+||++||+|++.+++++|+|+|+.+++++||+.|+++||++||++
T Consensus        76 ~~~la~~ls~~l~~~~~~~~~v~~li~G~D~~g-~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~  154 (188)
T cd03761          76 VAAASKLLSNMLYQYKGMGLSMGTMICGWDKTG-PGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYD  154 (188)
T ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEEEEeCCC-CEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHH
Confidence            99999999999999865 899999999999765 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEc
Q psy15384        163 LMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSY  196 (260)
Q Consensus       163 la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l  196 (260)
                      ++.+||+.+++||..++++++|++|+++| ++.+
T Consensus       155 l~~~~l~~~~~rd~~sg~~~~v~ii~~~g-~~~~  187 (188)
T cd03761         155 LARRAIYHATHRDAYSGGNVNLYHVREDG-WRKI  187 (188)
T ss_pred             HHHHHHHHHHHhcccCCCCeEEEEEcCCc-eEEc
Confidence            99999999999999999999999999999 7654

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit

Probab=100.00  E-value=1.6e-46  Score=320.03  Aligned_cols=189  Identities=44%  Similarity=0.807  Sum_probs=184.3

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+|+||||||+|+|.++     |.++..++++|||+|++|++|+++|..+|++.+.+.++.+++.|+++++++++
T Consensus         1 tt~igi~~~dgvvlaad~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   75 (189)
T cd03763           1 TTIVGVVFKDGVVLGADTRATE-----GPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPR   75 (189)
T ss_pred             CeEEEEEECCeEEEEEcCCccc-----CceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            6999999999999999999999     89999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHHH
Q psy15384         84 VICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTL  163 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~l  163 (260)
                      ++.++++|++++|.|+.||++++||||||++| |+||++||+|++.+++++|+|+|+..++++||++|+++||++||+++
T Consensus        76 ~~~~a~~l~~~l~~~~~p~~v~~ivaG~d~~g-~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l  154 (189)
T cd03763          76 VVTALTMLKQHLFRYQGHIGAALVLGGVDYTG-PHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKL  154 (189)
T ss_pred             HHHHHHHHHHHHHHcCCccceeEEEEeEcCCC-CEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHH
Confidence            99999999999999988999999999999776 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCc
Q psy15384        164 MVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPY  199 (260)
Q Consensus       164 a~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~  199 (260)
                      +++||+.+.+||..++++++|++|+++| ++..+||
T Consensus       155 ~~~~l~~~~~rd~~~~~~~~v~ii~~~g-~~~~~~~  189 (189)
T cd03763         155 VCEAIEAGIFNDLGSGSNVDLCVITKDG-VEYLRNY  189 (189)
T ss_pred             HHHHHHHHHHhcCcCCCceEEEEEcCCc-EEEecCC
Confidence            9999999999999999999999999999 9999886

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit

Probab=100.00  E-value=1.5e-46  Score=322.23  Aligned_cols=191  Identities=24%  Similarity=0.365  Sum_probs=180.6

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHh-hcCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLE-CQFPKAHT   80 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~-~~~~~~~~   80 (260)
                      ||+|+|||+++||||||+|+|.+.     |.++..++++|||+|++|++|+++|..+|++.++++++.+++ .|++.++.
T Consensus         1 ~G~T~igi~~kdgVvlaad~r~~~-----~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~   75 (197)
T cd03760           1 TGTSVIAIKYKDGVIIAADTLGSY-----GSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGH   75 (197)
T ss_pred             CCceEEEEEeCCcEEEEEcCcccc-----cceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            799999999999999999999998     899999999999999999999999999999999999999987 56678899


Q ss_pred             CCChHhHHHHHHHHHHhcc---CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCC--CC
Q psy15384         81 DIPVICPVTMIKQTLYKYH---GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE--NL  155 (260)
Q Consensus        81 ~i~v~~l~~~l~~~l~~~~---~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~--~m  155 (260)
                      +++++.++++|++++|.++   +||++++||||||++++|+||++||+|++.+++++|+|+|+.+++++||+.|++  +|
T Consensus        76 ~~~~~~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~m  155 (197)
T cd03760          76 SLSPKEIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDL  155 (197)
T ss_pred             CCCHHHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCC
Confidence            9999999999999988654   599999999999975669999999999999999999999999999999999999  99


Q ss_pred             CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccC
Q psy15384        156 SEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKP  198 (260)
Q Consensus       156 s~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~  198 (260)
                      |+|||++++.+||+.+.+||..++++++|++|+++| ++...|
T Consensus       156 s~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g-~~~~~~  197 (197)
T cd03760         156 TEEEARALIEECMKVLYYRDARSINKYQIAVVTKEG-VEIEGP  197 (197)
T ss_pred             CHHHHHHHHHHHHHHHHHhccccCCceEEEEECCCC-EEeCCC
Confidence            999999999999999999999999999999999999 876543

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit

Probab=100.00  E-value=1.7e-46  Score=321.16  Aligned_cols=187  Identities=22%  Similarity=0.297  Sum_probs=178.7

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      +|+|||+++||||||+|+|.++     |.++.+++++||++|++|++||+||+.||++.+.++++.+++.|+++++++++
T Consensus         2 ~t~igi~~~dgVvlaad~r~~~-----~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   76 (193)
T cd03758           2 ETLIGIKGKDFVILAADTSAAR-----SILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELS   76 (193)
T ss_pred             ceEEEEEeCCEEEEEEcCcccc-----CcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            7999999999999999999998     89999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhc---cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHH
Q psy15384         84 VICPVTMIKQTLYKY---HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEG  160 (260)
Q Consensus        84 v~~l~~~l~~~l~~~---~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eea  160 (260)
                      ++.++++|+++++.|   ++||++++||||||++++|+||++||+|++.+++++|+|+|+.+++++||+.|+++||+|||
T Consensus        77 ~~~la~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eea  156 (193)
T cd03758          77 PKAAANFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEA  156 (193)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHH
Confidence            999999999988643   35999999999999766699999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEc
Q psy15384        161 LTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSY  196 (260)
Q Consensus       161 i~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l  196 (260)
                      ++++.+||+.+.+||..++++++|++|+++| ++.+
T Consensus       157 i~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g-~~~~  191 (193)
T cd03758         157 LELMKKCIKELKKRFIINLPNFTVKVVDKDG-IRDL  191 (193)
T ss_pred             HHHHHHHHHHHHHhccccCCceEEEEEcCCC-eEeC
Confidence            9999999999999999999999999999999 7654

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PTZ00488 Proteasome subunit beta type-5; Provisional

Probab=100.00  E-value=1.1e-46  Score=333.48  Aligned_cols=192  Identities=23%  Similarity=0.335  Sum_probs=183.3

Q ss_pred             CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCC
Q psy15384          1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHT   80 (260)
Q Consensus         1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~   80 (260)
                      ++|+|+|||+++||||||+|+|.+.     |.++..++++||++|++|++|++||+.+|++.++++++.+++.|++++++
T Consensus        37 ~~G~T~IgIk~kdgVvlAaD~r~~~-----g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~  111 (247)
T PTZ00488         37 AHGTTTLAFKYGGGIIIAVDSKATA-----GPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGE  111 (247)
T ss_pred             CCCceEEEEEeCCEEEEEEecCccc-----CCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            4799999999999999999999998     89999999999999999999999999999999999999999999999999


Q ss_pred             CCChHhHHHHHHHHHHhccC-cceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHH
Q psy15384         81 DIPVICPVTMIKQTLYKYHG-YLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKE  159 (260)
Q Consensus        81 ~i~v~~l~~~l~~~l~~~~~-p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~ee  159 (260)
                      +++++.++++|+++++++|. |+.+++||||||++| |+||++||+|++.+++++|+|+|+.+++++||+.|+++||++|
T Consensus       112 ~isv~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~g-p~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eE  190 (247)
T PTZ00488        112 LISVAAASKILANIVWNYKGMGLSMGTMICGWDKKG-PGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEE  190 (247)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCCC-CEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCHHH
Confidence            99999999999999999864 566778999999776 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCc
Q psy15384        160 GLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPY  199 (260)
Q Consensus       160 ai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~  199 (260)
                      |++++++||+.+.+||..++++++|++|+++| ++.+++.
T Consensus       191 ai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g-~~~l~~~  229 (247)
T PTZ00488        191 AQDLGRRAIYHATFRDAYSGGAINLYHMQKDG-WKKISAD  229 (247)
T ss_pred             HHHHHHHHHHHHHHhccccCCCeEEEEEcCCc-cEECCHH
Confidence            99999999999999999999999999999999 9988443

>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit

Probab=100.00  E-value=4.1e-46  Score=323.13  Aligned_cols=189  Identities=21%  Similarity=0.297  Sum_probs=180.8

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|+|.++     |.++..++++||++|++|++||+||..||++.+++.++.+++.|+++++++
T Consensus         7 ~G~Tvigik~~dgVvlaaD~r~~~-----~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~   81 (212)
T cd03757           7 NGGTVLAIAGNDFAVIAGDTRLSE-----GYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKE   81 (212)
T ss_pred             CCccEEEEEcCCEEEEEECCcccc-----CCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCC
Confidence            699999999999999999999999     888888999999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccC--------
Q psy15384         82 IPVICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWK--------  152 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~--------  152 (260)
                      ++++.++++|++++|+++ +||++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|+        
T Consensus        82 i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~  161 (212)
T cd03757          82 MSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVE  161 (212)
T ss_pred             CCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCC
Confidence            999999999999998765 49999999999998777999999999999999999999999999999999985        


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEc
Q psy15384        153 -ENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSY  196 (260)
Q Consensus       153 -~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l  196 (260)
                       ++||++||++++.+||+.+++||..++++++|++|+++| ++..
T Consensus       162 ~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g-~~~~  205 (212)
T cd03757         162 RTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDG-IEEE  205 (212)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCC-EEEE
Confidence             899999999999999999999999999999999999999 6543

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit

Probab=100.00  E-value=1.6e-45  Score=313.40  Aligned_cols=186  Identities=29%  Similarity=0.492  Sum_probs=180.0

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+++||||||+|+|.++     |.++..++++||++|++|++|++||..+|++.+.++++.+++.|++.++++++
T Consensus         1 ~t~igi~~~dgVvla~D~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~   75 (188)
T cd03762           1 TTIIAVEYDGGVVLGADSRTST-----GSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPL   75 (188)
T ss_pred             CeEEEEEECCeEEEEEcccccC-----CceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCC
Confidence            6999999999999999999999     89999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHHH
Q psy15384         84 VICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTL  163 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~l  163 (260)
                      ++.++++|+++++++++||++++||||+|++++|+||++||+|++.+++++++|+|+.+++++||+.|+++||++||+++
T Consensus        76 ~~~~a~~l~~~~~~~~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l  155 (188)
T cd03762          76 VKTAASLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKF  155 (188)
T ss_pred             HHHHHHHHHHHHHhccccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHH
Confidence            99999999999999999999999999999754599999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEE
Q psy15384        164 MVDAIKAGILYDLGSGSKVDVTIIRKNGQVSS  195 (260)
Q Consensus       164 a~~al~~~~~~D~~sg~~iev~vit~~g~~~~  195 (260)
                      +++||+.+.+||..++++++|++|+++| ++.
T Consensus       156 ~~~al~~~~~rd~~~~~~~~i~~i~~~g-~~~  186 (188)
T cd03762         156 VKNALSLAMSRDGSSGGVIRLVIITKDG-VER  186 (188)
T ss_pred             HHHHHHHHHHhccccCCCEEEEEECCCC-EEE
Confidence            9999999999999999999999999999 653

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit

Probab=100.00  E-value=5.5e-45  Score=309.13  Aligned_cols=183  Identities=31%  Similarity=0.488  Sum_probs=178.0

Q ss_pred             cceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCC
Q psy15384          3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDI   82 (260)
Q Consensus         3 Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i   82 (260)
                      |+|+|||+++||||||+|+|.+.     |+++..++++|||+|++|++|+++|..+|++.+.++++.+++.|++.++.++
T Consensus         1 G~t~igi~~~dgVvla~d~~~~~-----~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~   75 (185)
T TIGR03634         1 GTTTVGIKCKDGVVLAADKRASM-----GNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPM   75 (185)
T ss_pred             CCcEEEEEeCCEEEEEEcCcccC-----CCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            89999999999999999999998     8999999999999999999999999999999999999999999999999999


Q ss_pred             ChHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHH
Q psy15384         83 PVICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGL  161 (260)
Q Consensus        83 ~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai  161 (260)
                      +++.++++|++++++++ +||++++||||+|++| |+||++||+|++.+++++|+|+|+.+++++||+.|+++||++||+
T Consensus        76 ~~~~~a~~l~~~~~~~~~rP~~v~~ivaG~d~~g-~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~  154 (185)
T TIGR03634        76 SVKALATLLSNILNSNRFFPFIVQLLVGGVDEEG-PHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAK  154 (185)
T ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEEEEEEEeCCC-CEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHH
Confidence            99999999999998874 5999999999999876 999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCcEEEEEEEcCC
Q psy15384        162 TLMVDAIKAGILYDLGSGSKVDVTIIRKNG  191 (260)
Q Consensus       162 ~la~~al~~~~~~D~~sg~~iev~vit~~g  191 (260)
                      +++++||+.+.+||..++++++|++|+++|
T Consensus       155 ~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g  184 (185)
T TIGR03634       155 KLAVRAIKSAIERDVASGNGIDVAVITKDG  184 (185)
T ss_pred             HHHHHHHHHHHHhcccCCCCEEEEEEcCCC
Confidence            999999999999999999999999999987

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit

Probab=100.00  E-value=1.4e-44  Score=307.52  Aligned_cols=186  Identities=31%  Similarity=0.474  Sum_probs=179.9

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+++||||||+|+|.++     |.++..++++||++|++|++++++|+.+|++.+.++++.+++.|++.++++++
T Consensus         1 tt~iai~~~dgvvia~d~r~~~-----g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   75 (188)
T cd03764           1 TTTVGIVCKDGVVLAADKRASM-----GNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMS   75 (188)
T ss_pred             CcEEEEEeCCEEEEEEcccccc-----CCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            6999999999999999999999     99999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHH
Q psy15384         84 VICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLT  162 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~  162 (260)
                      ++.+++++++++|+++ +||++++||||+|+ ++|+||++||+|++.+++++|+|+|+.+++++||+.|+++|+++||++
T Consensus        76 ~~~l~~~i~~~~~~~~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~  154 (188)
T cd03764          76 IKALATLLSNILNSSKYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKK  154 (188)
T ss_pred             HHHHHHHHHHHHHhcCCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHH
Confidence            9999999999999875 59999999999997 459999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEc
Q psy15384        163 LMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSY  196 (260)
Q Consensus       163 la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l  196 (260)
                      ++++||+.+.+||..++++++|++++++| ++.+
T Consensus       155 l~~~~l~~~~~rd~~~~~~i~i~iv~~~g-~~~~  187 (188)
T cd03764         155 LAIRAIKSAIERDSASGDGIDVVVITKDG-YKEL  187 (188)
T ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEECCCC-eEeC
Confidence            99999999999999999999999999999 8876

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2

Probab=100.00  E-value=6.5e-45  Score=318.60  Aligned_cols=193  Identities=18%  Similarity=0.295  Sum_probs=180.8

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|+|.+.      +++..++++||++|++|++||+||..+|++.+++.++.+++.|++.++++
T Consensus        26 ~G~t~igik~~dgVvlaad~~~~~------~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~   99 (227)
T cd03750          26 SGAPSVGIKAANGVVLATEKKVPS------PLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEP   99 (227)
T ss_pred             cCCCEEEEEeCCEEEEEEeecCCc------cccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCC
Confidence            699999999999999999999985      78888899999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS  156 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms  156 (260)
                      ++++.++++|++++++|     .+||++++||||||++| |+||++||+|++.+++++|+|+|+..++++||++|+++||
T Consensus       100 ~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g-~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms  178 (227)
T cd03750         100 IPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGG-PYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYNEDLE  178 (227)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCC-CEEEEECCCCCEEeeeEEEECCCCHHHHHHHHhhccCCCC
Confidence            99999999999988654     35999999999999775 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL  202 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~  202 (260)
                      ++||++++++||+.++++|+ ++++++|++|+++++++.+.|+++.
T Consensus       179 ~eeai~l~~~~l~~~~~~~l-~~~~iev~iv~~~~~~~~~~~~ei~  223 (227)
T cd03750         179 LEDAIHTAILTLKEGFEGQM-TEKNIEIGICGETKGFRLLTPAEIK  223 (227)
T ss_pred             HHHHHHHHHHHHHHHhcccC-CCCcEEEEEEECCCCEEECCHHHHH
Confidence            99999999999999999886 7999999999986449988776653

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type

Probab=100.00  E-value=1.1e-44  Score=315.61  Aligned_cols=194  Identities=23%  Similarity=0.286  Sum_probs=180.1

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|+|.++     |+++.+++++|||+|++|++|++||..+|++.+.++++.+++.|+++++++
T Consensus         1 ~G~T~igi~~kdgVvlaad~r~~~-----g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~   75 (219)
T TIGR03690         1 HGTTIVALTYPGGVLMAGDRRATQ-----GNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVP   75 (219)
T ss_pred             CCcEEEEEEECCEEEEEECCcccc-----CcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            599999999999999999999999     999999999999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc----cCcceeeEEEEEEeCC-CCceEEEEeecc-eEEeeCEEEEcCChHHHHHHHHhccCCCC
Q psy15384         82 IPVICPVTMIKQTLYKY----HGYLMCAFIIGGIDSA-GGNQLFSIFQHG-SSHGHKFCAMGTGLQPAMGILEAGWKENL  155 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~----~~p~g~sliiaG~D~~-g~p~Ly~idp~G-s~~~~~~~aiGsgs~~a~~~Le~~y~~~m  155 (260)
                      ++++.++++|+++++++    .+||++++||||||++ ++|+||++||+| ++..++++|+|+|+.+|+++||++|+++|
T Consensus        76 i~~~~la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~m  155 (219)
T TIGR03690        76 LTLDGKANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDL  155 (219)
T ss_pred             CCHHHHHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCc
Confidence            99999999999988754    4699999999999964 569999999999 57788999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhcCCCCCc-------EEEEEEEcCCcEEEccCccc
Q psy15384        156 SEKEGLTLMVDAIKAGILYDLGSGSK-------VDVTIIRKNGQVSSYKPYKV  201 (260)
Q Consensus       156 s~eeai~la~~al~~~~~~D~~sg~~-------iev~vit~~g~~~~l~~~~~  201 (260)
                      |++||++++++||..+.++|..+++.       ++|++|+++| ++.+.+.++
T Consensus       156 s~eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g-~~~l~~~ei  207 (219)
T TIGR03690       156 DEDDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADG-ARRVPESEL  207 (219)
T ss_pred             CHHHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCc-eEEcCHHHH
Confidence            99999999999999999999866664       3999999888 998844443

Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.

>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit

Probab=100.00  E-value=2.6e-44  Score=315.96  Aligned_cols=184  Identities=17%  Similarity=0.237  Sum_probs=169.2

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEec----CeEEEEecCChhHHHHHHHHHHHHHhhcCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLS----EKIYCCGAGSAADMKRLSGLVEANLECQFPKAH   79 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~----~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~   79 (260)
                      |-+|||+++||||||+|+|.+.      .++..++++|||+|+    +||+||+||++||++.+++++|.+++.|+++++
T Consensus         1 ~~~vGIk~kdGVVLaadkr~~~------~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g   74 (236)
T cd03765           1 TYCLGIKLDAGLVFASDSRTNA------GVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNL   74 (236)
T ss_pred             CeEEEEEeCCeEEEEEccCccC------CCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhC
Confidence            4689999999999999999987      455555899999998    899999999999999999999999999999999


Q ss_pred             C-CCChHhHHHHHHHHHHh----cc-------CcceeeEEEEEEeCCCCceEEEEeecceEEee----CEEEEcCChHHH
Q psy15384         80 T-DIPVICPVTMIKQTLYK----YH-------GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGH----KFCAMGTGLQPA  143 (260)
Q Consensus        80 ~-~i~v~~l~~~l~~~l~~----~~-------~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~----~~~aiGsgs~~a  143 (260)
                      + +++++.+++++++++++    ++       +||+|++||||||++++|+||++||+|++.++    +|+|+|+ +.++
T Consensus        75 ~~~~~v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a  153 (236)
T cd03765          75 LNAPTMFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYG  153 (236)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhh
Confidence            9 89999999998887544    33       59999999999996555999999999999999    6799996 6999


Q ss_pred             HHHHHhccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEE
Q psy15384        144 MGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSS  195 (260)
Q Consensus       144 ~~~Le~~y~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~  195 (260)
                      +++||++|+++||+|||++++++||.+++.||..++++|+|++|+++| ++.
T Consensus       154 ~~~Lek~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G-~~~  204 (236)
T cd03765         154 KPILDRVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDS-LQV  204 (236)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCC-eee
Confidence            999999999999999999999999999999999999999999999999 665

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01912 proteasome_beta proteasome beta subunit

Probab=100.00  E-value=1.6e-43  Score=300.56  Aligned_cols=186  Identities=37%  Similarity=0.580  Sum_probs=179.4

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+++||||||+|+|.+.     |.++..++.+|||+|++++++++||+.+|++.+.++++.+++.|++.++++++
T Consensus         1 tt~i~i~~~dgVvla~d~~~~~-----~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   75 (189)
T cd01912           1 TTIVGIKGKDGVVLAADTRASA-----GSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELS   75 (189)
T ss_pred             CcEEEEEeCCEEEEEEcCCccc-----CcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            6899999999999999999999     88877999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhccC-cceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHH
Q psy15384         84 VICPVTMIKQTLYKYHG-YLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLT  162 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~~-p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~  162 (260)
                      ++.+++++++++|++++ ||++++||||+|++++|+||++||+|++.+++++|+|+++.+++++||+.|+++||++||++
T Consensus        76 ~~~l~~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~  155 (189)
T cd01912          76 VKAAANLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVE  155 (189)
T ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHH
Confidence            99999999999999876 99999999999986669999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEE
Q psy15384        163 LMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSS  195 (260)
Q Consensus       163 la~~al~~~~~~D~~sg~~iev~vit~~g~~~~  195 (260)
                      ++.+||+.+.++|..++++++|++|+++| ++.
T Consensus       156 ~~~~~l~~~~~~d~~~~~~~~v~vi~~~g-~~~  187 (189)
T cd01912         156 LVKKAIDSAIERDLSSGGGVDVAVITKDG-VEE  187 (189)
T ss_pred             HHHHHHHHHHHhcCccCCcEEEEEECCCC-EEE
Confidence            99999999999999999999999999998 654

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PTZ00246 proteasome subunit alpha; Provisional

Probab=100.00  E-value=1.9e-43  Score=314.12  Aligned_cols=185  Identities=26%  Similarity=0.339  Sum_probs=174.1

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|+|.++     +.++..++++||++|++||+||++|+.+|++.+++.++.+++.|++.++++
T Consensus        30 ~g~t~Igik~~dgVvlaad~r~s~-----~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~  104 (253)
T PTZ00246         30 NASLTVGILCKEGVILGADKPISS-----KLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEP  104 (253)
T ss_pred             hCCCEEEEEECCEEEEEEecCCCC-----cCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            699999999999999999999999     777777789999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS  156 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms  156 (260)
                      +++..+++.++..++.|     .+||++++||||||++++|+||++||+|++.+++++|+|+|+..++++||++|+++|+
T Consensus       105 ~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~ms  184 (253)
T PTZ00246        105 QPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWKEDLT  184 (253)
T ss_pred             CCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHHhccCCCC
Confidence            99999999998875543     3599999999999975569999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCC
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNG  191 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g  191 (260)
                      ++||++++++||+.++.+|..++++++|++|++++
T Consensus       185 ~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~  219 (253)
T PTZ00246        185 LEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGE  219 (253)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC
Confidence            99999999999999999999899999999999875

>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit

Probab=100.00  E-value=2.1e-42  Score=302.07  Aligned_cols=189  Identities=25%  Similarity=0.316  Sum_probs=175.8

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|+|.+.      .++..++++||++|++|++|++||..+|++.+.+.++.++..|+++++++
T Consensus        28 ~G~tvigi~~~dgvvlaad~r~~~------~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~  101 (224)
T TIGR03633        28 RGTTAVGIKTKDGVVLAVDKRITS------KLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEP  101 (224)
T ss_pred             cCCCEEEEEECCEEEEEEeccCCc------cccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCC
Confidence            699999999999999999999975      67778899999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS  156 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms  156 (260)
                      ++++.++++|+++++.|     .+||++++||||+|.. +|+||++||.|++.+++++|+|+|+.+++++||+.|+++|+
T Consensus       102 ~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~-~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~  180 (224)
T TIGR03633       102 IDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDG-GPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLS  180 (224)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCC-cCEEEEECCCCCeecceEEEECCCCHHHHHHHHHhccCCCC
Confidence            99999999999987654     3599999999999965 49999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCc-EEEccC
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQ-VSSYKP  198 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~-~~~l~~  198 (260)
                      ++||++++++||+.+.. |..++++++|++|+++|+ ++.+.+
T Consensus       181 ~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~  222 (224)
T TIGR03633       181 LDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSV  222 (224)
T ss_pred             HHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCC
Confidence            99999999999999887 888899999999999873 555533

This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7

Probab=100.00  E-value=1.6e-42  Score=299.50  Aligned_cols=177  Identities=19%  Similarity=0.283  Sum_probs=167.1

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|+|.+.      .++..++.+||++|++|++|++||+.+|++.+.++++.+++.|+++++++
T Consensus        26 ~G~t~Igik~~dgVvlaad~~~~~------~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~   99 (207)
T cd03755          26 KGTTAVGVRGKDCVVLGVEKKSVA------KLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDP   99 (207)
T ss_pred             cCCCEEEEEeCCEEEEEEecCCCC------cccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCC
Confidence            699999999999999999999876      67777889999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS  156 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms  156 (260)
                      ++++.++++|++++++|     .+||++++||+|||++++|+||++||+|++.+++++|+|+|+..++++||++|+++||
T Consensus       100 i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms  179 (207)
T cd03755         100 VTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYKEEMT  179 (207)
T ss_pred             CCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHHhhccCCCC
Confidence            99999999999988655     3599999999999987669999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTII  187 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vi  187 (260)
                      ++||++++++||..+..   .+++++||+++
T Consensus       180 ~eeai~l~~~~l~~~~~---~~~~~~e~~~~  207 (207)
T cd03755         180 RDDTIKLAIKALLEVVQ---SGSKNIELAVM  207 (207)
T ss_pred             HHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence            99999999999999986   47899999985

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>KOG0176|consensus

Probab=100.00  E-value=6.2e-43  Score=290.80  Aligned_cols=193  Identities=22%  Similarity=0.350  Sum_probs=182.2

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      -|+|.|||+.++|||||+++|.++      +++.+++++||++|++||+|++||+.||++.+++++|.++++|++.|+++
T Consensus        33 LGsTaIGv~TkEgVvL~vEKritS------pLm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~  106 (241)
T KOG0176|consen   33 LGSTAIGVKTKEGVVLAVEKRITS------PLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEP  106 (241)
T ss_pred             cCCceeeeeccceEEEEEeccccC------cccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCc
Confidence            389999999999999999999998      89999999999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhcc----------CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhcc
Q psy15384         82 IPVICPVTMIKQTLYKYH----------GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGW  151 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~~----------~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y  151 (260)
                      ++|+.+.+.++++-.+++          +|||+++|+||+|++| |+||+.||+|+++.+++-|||+|+.-|.+.|++.|
T Consensus       107 i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~g-pqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~  185 (241)
T KOG0176|consen  107 ISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETG-PQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEY  185 (241)
T ss_pred             ccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCC-ceEEEeCCCCceEEecceeccccchHHHHHHHHHH
Confidence            999999999999876653          5999999999999877 99999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384        152 KENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL  202 (260)
Q Consensus       152 ~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~  202 (260)
                      +++|+++||+.+++..|+..++..+. ..|++|.++++.+.++++.|.+++
T Consensus       186 ~~~ltL~ea~~~~L~iLkqVMeeKl~-~~Nvev~~vt~e~~f~~~t~EE~~  235 (241)
T KOG0176|consen  186 HKDLTLKEAEKIVLKILKQVMEEKLN-SNNVEVAVVTPEGEFHIYTPEEVE  235 (241)
T ss_pred             hhcccHHHHHHHHHHHHHHHHHHhcC-ccceEEEEEcccCceEecCHHHHH
Confidence            99999999999999999999987764 689999999998769999777653

>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4

Probab=100.00  E-value=2.5e-42  Score=299.49  Aligned_cols=181  Identities=23%  Similarity=0.309  Sum_probs=170.2

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|+|.+.     +.++.+++++||++|++||+|++||+.+|++.+.++++.+++.|+++++++
T Consensus        28 ~G~t~igi~~~dgVvla~d~r~~~-----~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~  102 (213)
T cd03752          28 HAGTCLGILAKDGIVLAAEKKVTS-----KLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEP  102 (213)
T ss_pred             cCCCEEEEEeCCEEEEEEEeccCC-----cccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCC
Confidence            699999999999999999999998     677777799999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS  156 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms  156 (260)
                      ++++.+++.|+.+++.|     .+||++++||+|||++.+|+||.+||+|++.+++++|+|+|+.+++++||++|+++||
T Consensus       103 i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y~~~ms  182 (213)
T cd03752         103 IPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKDDMT  182 (213)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHhccCCCC
Confidence            99999999998765433     3599999999999965559999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTII  187 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vi  187 (260)
                      ++||++++++||+.+.+||..++.+++|+++
T Consensus       183 ~eea~~l~~~al~~~~~r~~~~~~~~ei~~~  213 (213)
T cd03752         183 LEEALALAVKVLSKTMDSTKLTSEKLEFATL  213 (213)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence            9999999999999999999888999999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3

Probab=100.00  E-value=2.3e-42  Score=299.75  Aligned_cols=179  Identities=24%  Similarity=0.243  Sum_probs=167.4

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|+|.++      .++..++++||++|++|++|++||+.+|++.++++++.+++.|++.++++
T Consensus        29 ~G~tvIgik~kdgVvla~d~r~~~------~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~  102 (212)
T cd03751          29 NSGTAIGIRCKDGVVLAVEKLVTS------KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTP  102 (212)
T ss_pred             cCCCEEEEEeCCEEEEEEEccccc------cccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCC
Confidence            689999999999999999999986      66667789999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS  156 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms  156 (260)
                      ++++.++++|+++++.|     .+||++++||||||++| |+||++||+|++.+++++|+|+|+..|+++||++|+++||
T Consensus       103 ~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~g-p~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~~dms  181 (212)
T cd03751         103 IPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDG-PQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSELT  181 (212)
T ss_pred             CCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCc-CEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhccCCCC
Confidence            99999999999976543     36999999999999665 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTII  187 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vi  187 (260)
                      ++||++++++||+.+++.+...+.+|||+++
T Consensus       182 ~eeai~l~~~~L~~~~~~~~~~~~~iei~~~  212 (212)
T cd03751         182 CREAVKEAAKIIYIVHDEIKDKAFELELSWV  212 (212)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence            9999999999999999866567899999874

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PRK03996 proteasome subunit alpha; Provisional

Probab=100.00  E-value=2.1e-42  Score=305.25  Aligned_cols=192  Identities=24%  Similarity=0.301  Sum_probs=177.2

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|+|.+.      .++..++.+||++|++||+|++||..+|++.++++++.+++.|+++++++
T Consensus        35 ~G~t~igik~~dgVvlaad~r~~~------~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~  108 (241)
T PRK03996         35 RGTTAVGVKTKDGVVLAVDKRITS------PLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEP  108 (241)
T ss_pred             hCCCEEEEEeCCEEEEEEeccCCC------cccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            699999999999999999999986      67778899999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS  156 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms  156 (260)
                      ++++.++++|++.++.|     .+||++++||||||.+| |+||++||+|++.+++++|+|+|+..++++||++|+++|+
T Consensus       109 i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~g-p~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s  187 (241)
T PRK03996        109 IGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGG-PRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKEDLS  187 (241)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCc-CEEEEECCCCCeecceEEEECCCcHHHHHHHHHhcccCCC
Confidence            99999999999987644     35999999999999766 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCc-EEEccCccc
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQ-VSSYKPYKV  201 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~-~~~l~~~~~  201 (260)
                      ++||++++++||..+..+ ..++++++|++|+++++ ++.+.+.++
T Consensus       188 ~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~~~~ei  232 (241)
T PRK03996        188 LEEAIELALKALAKANEG-KLDPENVEIAYIDVETKKFRKLSVEEI  232 (241)
T ss_pred             HHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEECCHHHH
Confidence            999999999999999875 45799999999999873 666655444

>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1

Probab=100.00  E-value=8.1e-42  Score=296.04  Aligned_cols=178  Identities=22%  Similarity=0.224  Sum_probs=166.3

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|+|.+.      .+  .++.+||++|++||+|++||+.+|++.+.++++.+++.|+++++++
T Consensus        26 ~G~t~IgIk~~dgVvlaad~r~~~------~l--~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~   97 (211)
T cd03749          26 QGSATVGLKSKTHAVLVALKRATS------EL--SSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSP   97 (211)
T ss_pred             cCCCEEEEEeCCEEEEEEeccCcc------cc--CCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCC
Confidence            699999999999999999999877      33  3467999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccC--CC
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWK--EN  154 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~--~~  154 (260)
                      ++++.+++.++.+++++     .+||++++||+|||++| |+||++||+|++.+++++|+|+|+..|+++||++|+  ++
T Consensus        98 ~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~g-p~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~  176 (211)
T cd03749          98 IPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESG-PHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEEFED  176 (211)
T ss_pred             CCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCC-CeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHhhccccC
Confidence            99999999999887643     35999999999999776 999999999999999999999999999999999999  59


Q ss_pred             CCHHHHHHHHHHHHHHHHhhcC-CCCCcEEEEEEE
Q psy15384        155 LSEKEGLTLMVDAIKAGILYDL-GSGSKVDVTIIR  188 (260)
Q Consensus       155 ms~eeai~la~~al~~~~~~D~-~sg~~iev~vit  188 (260)
                      ||++||+++++++|+.++.+|. .++++|||++|+
T Consensus       177 ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~  211 (211)
T cd03749         177 CSLEELIKHALRALRETLPGEQELTIKNVSIAIVG  211 (211)
T ss_pred             CCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence            9999999999999999999886 789999999984

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5

Probab=100.00  E-value=1.2e-41  Score=295.21  Aligned_cols=178  Identities=20%  Similarity=0.305  Sum_probs=167.4

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|+|.+.      .++..++++||++|++||+|++||+.+|++.+.+.++.+++.|++.++++
T Consensus        26 ~G~t~igik~~dgVvlaad~r~~~------~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~   99 (213)
T cd03753          26 LGSTAIGIKTKEGVVLAVEKRITS------PLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEP   99 (213)
T ss_pred             cCCCEEEEEeCCEEEEEEecccCC------cCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            799999999999999999999986      56777889999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhcc----------CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhcc
Q psy15384         82 IPVICPVTMIKQTLYKYH----------GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGW  151 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~~----------~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y  151 (260)
                      ++++.++++|+++++++.          +||++++||||||+.| |+||++||+|++.+++++|+|+++..++++||++|
T Consensus       100 i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~g-p~Ly~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~  178 (213)
T cd03753         100 MTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENG-PQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKY  178 (213)
T ss_pred             CCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCC-CEEEEECCCCCeecccEEEECCCcHHHHHHHHhhc
Confidence            999999999999887642          6999999999999766 99999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384        152 KENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTII  187 (260)
Q Consensus       152 ~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vi  187 (260)
                      +++||++||++++++||+.+..++ .+++++||+++
T Consensus       179 ~~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~  213 (213)
T cd03753         179 HKDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV  213 (213)
T ss_pred             cCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence            999999999999999999987766 57899999985

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal

Probab=100.00  E-value=2.1e-41  Score=293.26  Aligned_cols=179  Identities=25%  Similarity=0.348  Sum_probs=169.6

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|+|.+.      .++..++.+||++|++|++|++||+.+|++.+.+.++.+++.|+++++++
T Consensus        27 ~G~t~igik~~dgvvla~d~~~~~------~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~  100 (211)
T cd03756          27 RGTTALGIKCKEGVVLAVDKRITS------KLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEP  100 (211)
T ss_pred             cCCCEEEEEECCEEEEEEeccCCC------cccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            699999999999999999999975      67778899999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS  156 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms  156 (260)
                      ++++.++++|+..++.|     .+||++++||||||+.| |+||++||+|++.+++++|+|+|+..++++||++|+++|+
T Consensus       101 ~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~-~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~m~  179 (211)
T cd03756         101 IDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGG-PRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKEDMS  179 (211)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCC-CEEEEECCCCCeeeeEEEEECCCCHHHHHHHHhhccCCCC
Confidence            99999999999887554     24999999999999765 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEE
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIR  188 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit  188 (260)
                      ++||++++++||..+..+|. ++++++|++|+
T Consensus       180 ~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~  210 (211)
T cd03756         180 LEEAIELALKALYAALEENE-TPENVEIAYVT  210 (211)
T ss_pred             HHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence            99999999999999998887 89999999997

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01906 proteasome_protease_HslV proteasome_protease_HslV

Probab=100.00  E-value=3.1e-41  Score=284.17  Aligned_cols=179  Identities=33%  Similarity=0.493  Sum_probs=172.1

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+++||||||+|+|.+.     |.....++++|||+|+++++|+++|..+|++.+.+.++.++..|+++++++++
T Consensus         1 tt~igi~~~dgvvla~d~~~~~-----~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   75 (182)
T cd01906           1 TTIVGIKGKDGVVLAADKRVTS-----GLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIP   75 (182)
T ss_pred             CcEEEEEeCCEEEEEEecccCC-----cCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            6899999999999999999999     77777899999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhcc---CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHH
Q psy15384         84 VICPVTMIKQTLYKYH---GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEG  160 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~---~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eea  160 (260)
                      ++.++++|++++++++   +||++++|+||+|.+++|+||++||+|++.+++++|+|+|+..++++||+.|+++||++||
T Consensus        76 ~~~l~~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea  155 (182)
T cd01906          76 VEALAKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEA  155 (182)
T ss_pred             HHHHHHHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHH
Confidence            9999999999999876   7999999999999855699999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384        161 LTLMVDAIKAGILYDLGSGSKVDVTII  187 (260)
Q Consensus       161 i~la~~al~~~~~~D~~sg~~iev~vi  187 (260)
                      ++++++||+.+.++|..++.+++|++|
T Consensus       156 ~~l~~~~l~~~~~~~~~~~~~~~i~ii  182 (182)
T cd01906         156 IELALKALKSALERDLYSGGNIEVAVI  182 (182)
T ss_pred             HHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence            999999999999999988999999985

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo

>cd01911 proteasome_alpha proteasome alpha subunit

Probab=100.00  E-value=1.6e-41  Score=293.45  Aligned_cols=179  Identities=27%  Similarity=0.391  Sum_probs=169.9

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+||++++||||||+|+|.+.      +++..++.+|||+|++|++|+++|..+|++.+.+.++.+++.|+++++++
T Consensus        26 ~G~tvigi~~~dgVvlaaD~~~~~------~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~   99 (209)
T cd01911          26 NGSTAVGIKGKDGVVLAVEKKVTS------KLLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEP   99 (209)
T ss_pred             cCCCEEEEEECCEEEEEEEecCCc------cccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCC
Confidence            799999999999999999999987      46667899999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS  156 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms  156 (260)
                      ++++.++++|++++++|     .+||++++||||+|++++|+||.+||.|++.+++++++|+|+..++++||++|+++|+
T Consensus       100 ~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~ms  179 (209)
T cd01911         100 IPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYKKDLT  179 (209)
T ss_pred             CCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHHHhcccCCC
Confidence            99999999999988654     2499999999999987669999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTII  187 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vi  187 (260)
                      ++||++++++||+++..+|. ++++++|+++
T Consensus       180 ~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~  209 (209)
T cd01911         180 LEEAIKLALKALKEVLEEDK-KAKNIEIAVV  209 (209)
T ss_pred             HHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence            99999999999999999999 9999999985

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.

>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins

Probab=100.00  E-value=3e-41  Score=286.07  Aligned_cols=181  Identities=31%  Similarity=0.399  Sum_probs=168.3

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccC-cCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHN-CSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHT   80 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~-~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~   80 (260)
                      +|+|+|||+++||||||+|+|.+.     |+.+..++ ++|||+|++|++|++||..+|++.+.++++.+++.|++.++.
T Consensus         3 ~G~t~vgi~~~dgvvla~d~~~~~-----g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~   77 (190)
T PF00227_consen    3 NGTTVVGIKGKDGVVLAADKRISY-----GSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGR   77 (190)
T ss_dssp             TSBEEEEEEESSEEEEEEEEEEEE-----TTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCeEEEEEEECCEEEEEEcccccc-----ccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCc
Confidence            799999999999999999999998     77775555 799999999999999999999999999999999999999999


Q ss_pred             CCChHhHHHHHHHHH----Hh-ccCcceeeEEEEEEeCCCCceEEEEeecceEEee-CEEEEcCChHHHHHHHHhccCCC
Q psy15384         81 DIPVICPVTMIKQTL----YK-YHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGH-KFCAMGTGLQPAMGILEAGWKEN  154 (260)
Q Consensus        81 ~i~v~~l~~~l~~~l----~~-~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~-~~~aiGsgs~~a~~~Le~~y~~~  154 (260)
                      +++++.+++.+++.+    +. +++|+++++|+||+|++++|+||.+||+|++.++ +++|+|+|+..++++||+.|+++
T Consensus        78 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~  157 (190)
T PF00227_consen   78 PISPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPD  157 (190)
T ss_dssp             GTCHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTT
T ss_pred             cccchhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCC
Confidence            999997766665543    32 3569999999999998888999999999999999 69999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384        155 LSEKEGLTLMVDAIKAGILYDLGSGSKVDVTII  187 (260)
Q Consensus       155 ms~eeai~la~~al~~~~~~D~~sg~~iev~vi  187 (260)
                      ||++||++++++||+.+.++|..++++++|+||
T Consensus       158 ~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi  190 (190)
T PF00227_consen  158 LSLEEAIELALKALKEAIDRDILSGDNIEVAVI  190 (190)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence            999999999999999999999999999999987

They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....

>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6

Probab=100.00  E-value=6e-41  Score=291.43  Aligned_cols=179  Identities=21%  Similarity=0.226  Sum_probs=165.6

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|+|.+.      .++..++.+||++|++|++|++||+.+|++.+.++++.+++.|+++++++
T Consensus        28 ~g~t~igi~~~d~Vvlaad~r~~~------~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~  101 (215)
T cd03754          28 AGLTSVAVRGKDCAVVVTQKKVPD------KLIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYE  101 (215)
T ss_pred             CCccEEEEEeCCEEEEEEeccccc------cccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCC
Confidence            488999999999999999999987      45556689999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHH---hc--cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCC--
Q psy15384         82 IPVICPVTMIKQTLY---KY--HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKEN--  154 (260)
Q Consensus        82 i~v~~l~~~l~~~l~---~~--~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~--  154 (260)
                      ++++.++++++++++   ++  .+||++++||||||++++|+||++||+|++.+++++|+|+|+..++++||++|+++  
T Consensus       102 i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~~~  181 (215)
T cd03754         102 MPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKKKPD  181 (215)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHHHHHhccccc
Confidence            999999999998633   33  24999999999999765699999999999999999999999999999999999985  


Q ss_pred             C--CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384        155 L--SEKEGLTLMVDAIKAGILYDLGSGSKVDVTII  187 (260)
Q Consensus       155 m--s~eeai~la~~al~~~~~~D~~sg~~iev~vi  187 (260)
                      |  |++||++++++||..+.+||.. ++++||+++
T Consensus       182 ~~~s~eeai~l~~~al~~~~~rd~~-~~~~ei~~~  215 (215)
T cd03754         182 LIESYEETVELAISCLQTVLSTDFK-ATEIEVGVV  215 (215)
T ss_pred             cCCCHHHHHHHHHHHHHHHhcccCC-CCcEEEEEC
Confidence            7  9999999999999999999975 899999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type

Probab=100.00  E-value=4.3e-40  Score=288.29  Aligned_cols=187  Identities=19%  Similarity=0.252  Sum_probs=165.9

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCC-C
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAH-T   80 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~   80 (260)
                      .|+|+|||+++||||||+|++..             +.+||++|+|||+|++||+.+|++.+++.++.+++.|++.++ .
T Consensus        26 ~g~T~VGIk~kdgVVLaaek~~~-------------~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~   92 (228)
T TIGR03691        26 RGRSVVVLTYADGILFVAENPSR-------------SLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRR   92 (228)
T ss_pred             cCCcEEEEEeCCeEEEEEecCCC-------------CcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            58999999999999999998632             389999999999999999999999999999999999999998 6


Q ss_pred             CCChHhHHHHHHHHHHh----ccCcceeeEEEEEEeC-CCCceEEEEeecceEEeeC-EEEEcCChHHHHHHHHhccCCC
Q psy15384         81 DIPVICPVTMIKQTLYK----YHGYLMCAFIIGGIDS-AGGNQLFSIFQHGSSHGHK-FCAMGTGLQPAMGILEAGWKEN  154 (260)
Q Consensus        81 ~i~v~~l~~~l~~~l~~----~~~p~g~sliiaG~D~-~g~p~Ly~idp~Gs~~~~~-~~aiGsgs~~a~~~Le~~y~~~  154 (260)
                      +++++.+++.+++.+..    +.+||+|++||||||+ +.+|+||++||+|++.+++ ++|+|+|+..++++||++|+++
T Consensus        93 ~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~~~  172 (228)
T TIGR03691        93 DVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYRDG  172 (228)
T ss_pred             CccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcCCC
Confidence            89999998887776543    3579999999999985 3459999999999999976 8999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHh--hcCCCCCcEEEEEEEcCC---cEEEccCccc
Q psy15384        155 LSEKEGLTLMVDAIKAGIL--YDLGSGSKVDVTIIRKNG---QVSSYKPYKV  201 (260)
Q Consensus       155 ms~eeai~la~~al~~~~~--~D~~sg~~iev~vit~~g---~~~~l~~~~~  201 (260)
                      ||++||++++++||+.++.  +|..++.++||++|++++   +++.|.+.++
T Consensus       173 ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei  224 (228)
T TIGR03691       173 LSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEAL  224 (228)
T ss_pred             CCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHH
Confidence            9999999999999999964  556789999999999754   2777755544

Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.

>KOG0183|consensus

Probab=100.00  E-value=1.2e-41  Score=286.15  Aligned_cols=205  Identities=20%  Similarity=0.292  Sum_probs=189.2

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+||++++|+|||+.+++...      .|++.+...||..+++|+++++||+.||++.|++++|.+|+.|+++.+.+
T Consensus        29 kGstaVgvrg~~~vvlgvEkkSv~------~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edp  102 (249)
T KOG0183|consen   29 KGSTAVGVRGNNCVVLGVEKKSVP------KLQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDP  102 (249)
T ss_pred             cCceEEEeccCceEEEEEeecchh------hhhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCC
Confidence            699999999999999999999986      89999999999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCC--
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKEN--  154 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~--  154 (260)
                      +++++++++|+++-++|     ++|||++.||+|||++|.|+||+++|+|.+.+|++.|||.++..++.+||++|.+.  
T Consensus       103 vtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y~e~~~  182 (249)
T KOG0183|consen  103 VTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEKNYKEEAI  182 (249)
T ss_pred             cHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHHhcccccc
Confidence            99999999999875544     35999999999999999999999999999999999999999999999999999976  


Q ss_pred             CCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccccccCCCCCcceeeeeeeecccccc
Q psy15384        155 LSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKPS  234 (260)
Q Consensus       155 ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~~~  234 (260)
                      .+..++++|++++|.+....+   +.|++++|+++++.++++                     .+.+|.++|..|+.|..
T Consensus       183 ~~~~~~ikL~ir~LleVvqs~---~~nie~aVm~~~~~~~~l---------------------~~~~I~~~v~~ie~E~e  238 (249)
T KOG0183|consen  183 ATEGETIKLAIRALLEVVQSG---GKNIEVAVMKRRKDLKML---------------------ESEEIDDIVKEIEQEEE  238 (249)
T ss_pred             cccccHHHHHHHHHHHHhhcC---CCeeEEEEEecCCceeec---------------------CHHHHHHHHHHHHHHHH
Confidence            688999999999999998763   689999999998767777                     67788899999987744


Q ss_pred             cc
Q psy15384        235 EG  236 (260)
Q Consensus       235 ~~  236 (260)
                      ++
T Consensus       239 ~e  240 (249)
T KOG0183|consen  239 AE  240 (249)
T ss_pred             HH
Confidence            33

>KOG0185|consensus

Probab=100.00  E-value=3.7e-40  Score=280.43  Aligned_cols=208  Identities=22%  Similarity=0.321  Sum_probs=197.9

Q ss_pred             CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhc-CCCCC
Q psy15384          1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQ-FPKAH   79 (260)
Q Consensus         1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~-~~~~~   79 (260)
                      ||||++||++|+||||||||+..++     |++...++++||++|+||++++++|..+|+|.+.+.+.....+. .+..+
T Consensus        39 vTGTSVla~ky~~GVviaaD~lgSY-----GslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg  113 (256)
T KOG0185|consen   39 VTGTSVLALKYKDGVVIAADTLGSY-----GSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDG  113 (256)
T ss_pred             eccceEEEEEecCceEEEecccccc-----hhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccc
Confidence            6999999999999999999999999     99999999999999999999999999999999999998887764 36777


Q ss_pred             CCCChHhHHHHHHHHHHhcc---CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccC---C
Q psy15384         80 TDIPVICPVTMIKQTLYKYH---GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWK---E  153 (260)
Q Consensus        80 ~~i~v~~l~~~l~~~l~~~~---~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~---~  153 (260)
                      ..+.++.++++|.++||++|   .|++.+++|||+|.+|.|+|-++|.-|..++.+..|+|.|.+.|.++|++.|+   +
T Consensus       114 ~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~  193 (256)
T KOG0185|consen  114 QSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKKGE  193 (256)
T ss_pred             cccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhccch
Confidence            89999999999999999876   49999999999999899999999999999999999999999999999999998   5


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccccccC
Q psy15384        154 NLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCII  214 (260)
Q Consensus       154 ~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~~~~~  214 (260)
                      +++.+||..++.+||+..++||+.+.++++|++|+++| +++-.|+++...|.+.+..+.|
T Consensus       194 ~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eG-v~i~~p~qv~~~W~fa~~~~gy  253 (256)
T KOG0185|consen  194 DLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEG-VTISKPYQVKTNWDFAETIKGY  253 (256)
T ss_pred             hhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccc-eEecCceeeeecchhhhhcccc
Confidence            79999999999999999999999999999999999999 9999999999999998777666

>KOG0175|consensus

Probab=100.00  E-value=1.3e-39  Score=280.16  Aligned_cols=194  Identities=24%  Similarity=0.380  Sum_probs=189.1

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||.+|.+|+.|||+|+|+|++.     |++|.+..++||..||++++-.+||-+|||+...+.+.++|++|++.+++.
T Consensus        70 hGTTTLAF~f~~GvivAvDSRAs~-----G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnker  144 (285)
T KOG0175|consen   70 HGTTTLAFKFKGGVIVAVDSRASA-----GSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKER  144 (285)
T ss_pred             CCceEEEEEecCcEEEEEeccccc-----cceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcc
Confidence            699999999999999999999999     999999999999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhccCc-ceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHH
Q psy15384         82 IPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEG  160 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~~~p-~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eea  160 (260)
                      |+|..+.++|+++++||+|. +.+..+|+|||+.| |.||+||.+|+....+-+++||||.+|.++|++.|++|||.|||
T Consensus       145 iSVsaASKllsN~~y~YkGmGLsmGtMi~G~Dk~G-P~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA  223 (285)
T KOG0175|consen  145 ISVSAASKLLSNMVYQYKGMGLSMGTMIAGWDKKG-PGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEA  223 (285)
T ss_pred             eehHHHHHHHHHHHhhccCcchhheeeEeeccCCC-CceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHH
Confidence            99999999999999999995 89999999999988 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384        161 LTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL  202 (260)
Q Consensus       161 i~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~  202 (260)
                      .+|+++||.++.+||.+||+-+.++.|+++| +..+.+..+.
T Consensus       224 ~~L~rrAI~hAThRDaySGG~vnlyHv~edG-W~~v~~~Dv~  264 (285)
T KOG0175|consen  224 YDLARRAIYHATHRDAYSGGVVNLYHVKEDG-WVKVSNTDVS  264 (285)
T ss_pred             HHHHHHHHHHHHhcccccCceEEEEEECCcc-ceecCCccHH
Confidence            9999999999999999999999999999999 9988887663

>KOG0181|consensus

Probab=100.00  E-value=3.3e-40  Score=273.92  Aligned_cols=192  Identities=19%  Similarity=0.334  Sum_probs=180.2

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      .|.+.|||+..||||||++++..+      .++...++.|++.|.+||+|..||+.+|++.+++..|+.++.|..-|+++
T Consensus        31 ~G~~SvGi~A~nGvVlatekk~~s------~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~  104 (233)
T KOG0181|consen   31 NGQTSVGIKAANGVVLATEKKDVS------PLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEP  104 (233)
T ss_pred             CCCCceeeeecCceEEEeccCCCC------ccchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCC
Confidence            688999999999999999999887      89999999999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc---c--CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384         82 IPVICPVTMIKQTLYKY---H--GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS  156 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~---~--~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms  156 (260)
                      ||+..+++.++..|+.|   .  +|||++++|+|||+.+ |.||++||+|+++.|+++|+|.+...++.+||++|+++|.
T Consensus       105 ~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~-p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~edle  183 (233)
T KOG0181|consen  105 IPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGG-PLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEKRYNEDLE  183 (233)
T ss_pred             CCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCc-eeEEEECCccceeehhhhhhccCcchHHHHHHHHhccccc
Confidence            99999999999988765   3  3999999999999775 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL  202 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~  202 (260)
                      ++++++.|+.+|++.++... +.+||||+++..++ |+.+.+.+++
T Consensus       184 ldd~ihtailtlkE~fege~-~~~nieigv~~~~~-F~~lt~~eI~  227 (233)
T KOG0181|consen  184 LDDAIHTAILTLKESFEGEM-TAKNIEIGVCGENG-FRRLTPAEIE  227 (233)
T ss_pred             cchHHHHHHHHHHHHhcccc-ccCceEEEEecCCc-eeecCHHHHH
Confidence            99999999999999998887 47999999999888 9988555543

>KOG0174|consensus

Probab=100.00  E-value=3e-38  Score=262.09  Aligned_cols=195  Identities=30%  Similarity=0.517  Sum_probs=186.2

Q ss_pred             CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCC
Q psy15384          1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHT   80 (260)
Q Consensus         1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~   80 (260)
                      .+||||+|++|++||||++|+|.+.     |.++.++-.+||.+|.|+|+||-||.+||.|.+.+.++..+..|..+++.
T Consensus        17 stGTTImAv~y~gGVvlGaDSRTs~-----GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~   91 (224)
T KOG0174|consen   17 STGTTIMAVEYDGGVVLGADSRTST-----GAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENK   91 (224)
T ss_pred             ccCceEEEEEEcCcEEEeccCCccc-----hHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCC
Confidence            4899999999999999999999999     99999999999999999999999999999999999999999999999999


Q ss_pred             CCChHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHH
Q psy15384         81 DIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEG  160 (260)
Q Consensus        81 ~i~v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eea  160 (260)
                      ++.|..+++.++++.|+|+..+.+.+||||||+..+.++|.+---|+..+.+++.-||||.+.+++++.+|+|+||+||+
T Consensus        92 ~p~v~~aA~l~r~~~Y~~re~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~  171 (224)
T KOG0174|consen   92 PPLVHTAASLFREICYNYREMLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEEC  171 (224)
T ss_pred             CchHHHHHHHHHHHHHhCHHhhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHHHH
Confidence            99999999999999999999999999999999876699999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEE--EccCccc
Q psy15384        161 LTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVS--SYKPYKV  201 (260)
Q Consensus       161 i~la~~al~~~~~~D~~sg~~iev~vit~~g~~~--~l~~~~~  201 (260)
                      +.++++|+..++.||-.||+-|.+.+|+++| ++  ++.+.+.
T Consensus       172 ~~fvk~Av~lAi~rDGsSGGviR~~~I~~~G-ver~~~~~d~~  213 (224)
T KOG0174|consen  172 VRFVKNAVSLAIERDGSSGGVIRLVIINKAG-VERRFFPGDKL  213 (224)
T ss_pred             HHHHHHHHHHHHhccCCCCCEEEEEEEccCC-ceEEEecCCcc
Confidence            9999999999999999999999999999999 54  4444443

>KOG0178|consensus

Probab=100.00  E-value=3.3e-36  Score=252.78  Aligned_cols=184  Identities=23%  Similarity=0.313  Sum_probs=170.8

Q ss_pred             cceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCC
Q psy15384          3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDI   82 (260)
Q Consensus         3 Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i   82 (260)
                      .+|+||+.++||||||+++|.++||+     ..+...+||++|+|||+|+.+|+.+|+..|++.+|..+|.|.++|++++
T Consensus        31 aGt~iGila~DGvvLa~e~k~t~kll-----~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~i  105 (249)
T KOG0178|consen   31 AGTCIGILASDGVVLAGENKVTSKLL-----DTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEI  105 (249)
T ss_pred             hcceeEEEecCceEEEeecccchhhh-----hccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCC
Confidence            47899999999999999999998543     3445789999999999999999999999999999999999999999999


Q ss_pred             ChHhHHHHHHHH---HHhccC--cceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCC-C
Q psy15384         83 PVICPVTMIKQT---LYKYHG--YLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENL-S  156 (260)
Q Consensus        83 ~v~~l~~~l~~~---l~~~~~--p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~m-s  156 (260)
                      |++.+++.|+++   ++||+|  |||||+|.+|||..-+.+||+.||+|++..|+++++|.++.+|++.|.+.|++++ +
T Consensus       106 P~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykdd~~~  185 (249)
T KOG0178|consen  106 PCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKDDEND  185 (249)
T ss_pred             cHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchHHHHHHHHhhhcccccc
Confidence            999999998776   678865  9999999999997666999999999999999999999999999999999999875 5


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCC
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNG  191 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g  191 (260)
                      ++||+.+|++.|......+..+...+|++.++++.
T Consensus       186 ~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~  220 (249)
T KOG0178|consen  186 LEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDC  220 (249)
T ss_pred             HHHHHHHHHHHHHhhcccCCCChhheEEEEEEecC
Confidence            99999999999999999888889999999999986

>PRK05456 ATP-dependent protease subunit HslV; Provisional

Probab=100.00  E-value=4.7e-35  Score=245.92  Aligned_cols=166  Identities=23%  Similarity=0.249  Sum_probs=150.3

Q ss_pred             cceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEe-cCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRL-SEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         3 Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      |||+|||+++||||||+|+|++.     |.++.+++++||++| ++|++||+||..||++.+.+.++.+++.|+...   
T Consensus         1 gtTivgi~~~dgVvlaaD~r~s~-----g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~~---   72 (172)
T PRK05456          1 GTTILAVRRNGKVAIAGDGQVTL-----GNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQGNL---   72 (172)
T ss_pred             CcEEEEEEECCEEEEEECCceEe-----CcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccCcc---
Confidence            79999999999999999999999     999999999999999 999999999999999999999999999998422   


Q ss_pred             CChHhHHHHHHHHH-HhccCcceeeEEEEEEeCCCCceEEEEeecceEEee--CEEEEcCChHHHHHHHHhccC-CCCCH
Q psy15384         82 IPVICPVTMIKQTL-YKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGH--KFCAMGTGLQPAMGILEAGWK-ENLSE  157 (260)
Q Consensus        82 i~v~~l~~~l~~~l-~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~--~~~aiGsgs~~a~~~Le~~y~-~~ms~  157 (260)
                        ++.++++++.++ +.|+.|+.+++|++  |.   |+||.+||.|+..+.  ++.|+|||+.+|.++||++|+ ++|  
T Consensus        73 --~~~~a~l~~~l~~~~~~~~l~~~~lv~--d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m--  143 (172)
T PRK05456         73 --LRAAVELAKDWRTDRYLRRLEAMLIVA--DK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL--  143 (172)
T ss_pred             --HHHHHHHHHHHHhccCCCccEEEEEEE--cC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC--
Confidence              466666665543 45567888999994  43   799999999999877  899999999999999999999 999  


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy15384        158 KEGLTLMVDAIKAGILYDLGSGSKVDVTI  186 (260)
Q Consensus       158 eeai~la~~al~~~~~~D~~sg~~iev~v  186 (260)
                       ||++++++|++++.+||..|+++|+|-.
T Consensus       144 -eA~~la~kai~~A~~Rd~~sg~~i~v~~  171 (172)
T PRK05456        144 -SAEEIAEKALKIAADICIYTNHNITIEE  171 (172)
T ss_pred             -CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence             9999999999999999999999999864

>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome

Probab=100.00  E-value=1e-34  Score=242.79  Aligned_cols=166  Identities=23%  Similarity=0.226  Sum_probs=149.5

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecC-eEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSE-KIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDI   82 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~-~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i   82 (260)
                      ||+|||+++||||||+|+|++.     |.++.+++.+||++|++ |++||+||..+|++.+.++++.++++|+++.++  
T Consensus         1 tTivgi~~~dgVvlaaD~r~t~-----G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~--   73 (171)
T cd01913           1 TTILAVRKNGKVVIAGDGQVTL-----GNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR--   73 (171)
T ss_pred             CeEEEEEECCEEEEEECCceEe-----ccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH--
Confidence            7999999999999999999999     99999999999999998 999999999999999999999999999988773  


Q ss_pred             ChHhHHHHHHHHH-HhccCcceeeEEEEEEeCCCCceEEEEeecceEEee--CEEEEcCChHHHHHHHHhccCCC-CCHH
Q psy15384         83 PVICPVTMIKQTL-YKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGH--KFCAMGTGLQPAMGILEAGWKEN-LSEK  158 (260)
Q Consensus        83 ~v~~l~~~l~~~l-~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~--~~~aiGsgs~~a~~~Le~~y~~~-ms~e  158 (260)
                         .++++++.++ +++++++.+.++++++     ++||.+||.|+..+.  ++.++||||.+|.++||.+|+++ ||  
T Consensus        74 ---~aa~l~~~l~~~~~~~~l~a~~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms--  143 (171)
T cd01913          74 ---AAVELAKDWRTDRYLRRLEAMLIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS--  143 (171)
T ss_pred             ---HHHHHHHHHHhccCcCceEEEEEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC--
Confidence               5577766664 5666666677777543     489999999999998  49999999999999999999995 99  


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384        159 EGLTLMVDAIKAGILYDLGSGSKVDVTII  187 (260)
Q Consensus       159 eai~la~~al~~~~~~D~~sg~~iev~vi  187 (260)
                       +.++|.+|++.+++||..||++|+|-.+
T Consensus       144 -~~~la~~Av~~A~~rd~~tg~~i~~~~~  171 (171)
T cd01913         144 -AEEIARKALKIAADICIYTNHNITVEEL  171 (171)
T ss_pred             -HHHHHHHHHHHHHhhCcccCCCEEEEeC
Confidence             5599999999999999999999998653

HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.

>KOG0179|consensus

Probab=100.00  E-value=1.6e-34  Score=242.45  Aligned_cols=188  Identities=22%  Similarity=0.271  Sum_probs=179.3

Q ss_pred             CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCC
Q psy15384          1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHT   80 (260)
Q Consensus         1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~   80 (260)
                      ++|+|+|||.+.|+.|+|+|||.+.     |-.+.++...|||+++|+++++.+|+.||+..|.+.++..+..|++++++
T Consensus        27 ~NGGT~vaIaG~dFavvA~DTR~s~-----gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k  101 (235)
T KOG0179|consen   27 DNGGTTVAIAGEDFAVVAGDTRMSS-----GYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNK  101 (235)
T ss_pred             cCCceEEEEcCCceEEEeccccccc-----ceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccc
Confidence            4799999999999999999999999     99999999999999999999999999999999999999999999999999


Q ss_pred             CCChHhHHHHHHHHHHhccC-cceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccC-------
Q psy15384         81 DIPVICPVTMIKQTLYKYHG-YLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWK-------  152 (260)
Q Consensus        81 ~i~v~~l~~~l~~~l~~~~~-p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~-------  152 (260)
                      .+++..+|++|+.+||..|- ||.+..|++|+|++|++.+|+.||-|++....+.|-|+++.+.+++|+....       
T Consensus       102 ~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e  181 (235)
T KOG0179|consen  102 KMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLE  181 (235)
T ss_pred             cccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccc
Confidence            99999999999999998764 9999999999999999999999999999999999999999999999997431       


Q ss_pred             ----CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEE
Q psy15384        153 ----ENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVS  194 (260)
Q Consensus       153 ----~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~  194 (260)
                          ..+|+|+|+.|+.+++..+.+||..+|++++|||++++| ++
T Consensus       182 ~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~g-V~  226 (235)
T KOG0179|consen  182 NAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDG-VE  226 (235)
T ss_pred             cCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCC-EE
Confidence                358999999999999999999999999999999999999 55

>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit

Probab=100.00  E-value=7.1e-34  Score=237.71  Aligned_cols=165  Identities=22%  Similarity=0.228  Sum_probs=149.0

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEe-cCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRL-SEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDI   82 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i   82 (260)
                      ||+|||+++||||||+|+|++.     |.++.+++.+||++| ++|++||+||..||++.+.++++.++++|+++.    
T Consensus         1 tTivgi~~~dgVvlaaD~r~s~-----g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~----   71 (171)
T TIGR03692         1 TTILAVRRNGKVVIAGDGQVTL-----GNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL----   71 (171)
T ss_pred             CeEEEEEECCEEEEEECCceEe-----ceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch----
Confidence            7999999999999999999999     999999999999999 599999999999999999999999999998854    


Q ss_pred             ChHhHHHHHHHH-HHhccCcceeeEEEEEEeCCCCceEEEEeecceEEee--CEEEEcCChHHHHHHHHhcc-CCCCCHH
Q psy15384         83 PVICPVTMIKQT-LYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGH--KFCAMGTGLQPAMGILEAGW-KENLSEK  158 (260)
Q Consensus        83 ~v~~l~~~l~~~-l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~--~~~aiGsgs~~a~~~Le~~y-~~~ms~e  158 (260)
                       .+.++++++++ .++|.+++.+.+|++|+     ++||.+||.|+..+.  +++++||||.+|.++||.+| +++|+  
T Consensus        72 -~~~~a~l~~~~~~~~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s--  143 (171)
T TIGR03692        72 -TRAAVELAKDWRTDRYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS--  143 (171)
T ss_pred             -HHHHHHHHHHHhhcccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC--
Confidence             37778888875 35665567788777633     489999999999996  69999999999999999999 57778  


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy15384        159 EGLTLMVDAIKAGILYDLGSGSKVDVTI  186 (260)
Q Consensus       159 eai~la~~al~~~~~~D~~sg~~iev~v  186 (260)
                       |+++|.+|++.+++||..||++|+|-.
T Consensus       144 -a~~la~~Av~~A~~rd~~sg~~i~v~~  170 (171)
T TIGR03692       144 -AEEIAREALKIAADICIYTNHNITIEE  170 (171)
T ss_pred             -HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence             999999999999999999999999865

The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.

>KOG0177|consensus

Probab=100.00  E-value=3.9e-34  Score=236.80  Aligned_cols=189  Identities=21%  Similarity=0.280  Sum_probs=179.9

Q ss_pred             eEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCCh
Q psy15384          5 TICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIPV   84 (260)
Q Consensus         5 tivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v   84 (260)
                      +++||++.|+|++|+||.+..     +-++.+.+.+|+|.|++++.++++|.++|+-++.+++++++++|++++|.++++
T Consensus         3 ~llGIkg~dfvilAsDt~~~~-----si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp   77 (200)
T KOG0177|consen    3 TLLGIKGPDFVILASDTSAAR-----SILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSP   77 (200)
T ss_pred             eEEEeecCCEEEEeecchhhc-----ceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCH
Confidence            789999999999999999998     899999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhc---cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHH
Q psy15384         85 ICPVTMIKQTLYKY---HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGL  161 (260)
Q Consensus        85 ~~l~~~l~~~l~~~---~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai  161 (260)
                      ..++++.++.+..+   +.||.+++|+||+|++.+|.||++|..|+..+.+|++.|.++.++.++|++.|+|+||.+||+
T Consensus        78 ~~aahFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~  157 (200)
T KOG0177|consen   78 SAAAHFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEAL  157 (200)
T ss_pred             HHHHHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHH
Confidence            99999999988654   569999999999998766999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCc
Q psy15384        162 TLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPY  199 (260)
Q Consensus       162 ~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~  199 (260)
                      .+..+|+.++..|-...-.++.|.||++|| ++.+.+.
T Consensus       158 ~lmkKCv~El~kRlvin~~~f~v~IVdkdG-ir~~~~i  194 (200)
T KOG0177|consen  158 DLMKKCVLELKKRLVINLPGFIVKIVDKDG-IRKLDDI  194 (200)
T ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEcCCC-ceecccc
Confidence            999999999999988788999999999999 8877444

>KOG0184|consensus

Probab=100.00  E-value=4.5e-33  Score=235.53  Aligned_cols=182  Identities=20%  Similarity=0.160  Sum_probs=165.3

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+|||||||++|+..++      +|......+|||.|++||+|+++|+.+|.+.+.++++.++..|+-+|+.+
T Consensus        33 n~~T~IGIk~kdGVVl~vEKli~S------kLy~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~p  106 (254)
T KOG0184|consen   33 NSGTCIGIKCKDGVVLAVEKLITS------KLYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDP  106 (254)
T ss_pred             cCCcEEEEecCCeEEEEEeeeecc------cccccCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCC
Confidence            589999999999999999999998      77888889999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHh-----ccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384         82 IPVICPVTMIKQTLYK-----YHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS  156 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~-----~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms  156 (260)
                      +|...++.+++++.+-     .-+||||+.++++||.+| |+||.++|+|.++.++++|+|.|.+.|++.||+.--..|+
T Consensus       107 iP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g-~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~~~~mt  185 (254)
T KOG0184|consen  107 IPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEG-PQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLKIDEMT  185 (254)
T ss_pred             CchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCC-ceEEEEcCCCCccceeeeeccchhHHHHHHHHhccccccc
Confidence            9999999999997543     347999999999999766 9999999999999999999999999999999999888999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcC
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKN  190 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~  190 (260)
                      .+|+++.+.+.|..+-+......-.+|+.++...
T Consensus       186 ~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~e  219 (254)
T KOG0184|consen  186 CKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEE  219 (254)
T ss_pred             HHHHHHHHHheeEeecccccCcceEEEEEEEEee
Confidence            9999999999999775443334456888888763

>KOG0863|consensus

Probab=100.00  E-value=1.2e-32  Score=234.11  Aligned_cols=190  Identities=21%  Similarity=0.214  Sum_probs=172.5

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      .|++.||++.++..||+|-+|..+.|        ...++||++|++|+++++||+++|++.|.++++.+|..+++.++++
T Consensus        31 qGsatVGLks~thaVLvAl~r~~seL--------ss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~  102 (264)
T KOG0863|consen   31 QGSATVGLKSRTHAVLVALKRAQSEL--------SSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRP  102 (264)
T ss_pred             cccceEeecccceEEEeeeccchhHH--------HHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCc
Confidence            58999999999999999999988733        3358999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHH---hc--cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccC--CC
Q psy15384         82 IPVICPVTMIKQTLY---KY--HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWK--EN  154 (260)
Q Consensus        82 i~v~~l~~~l~~~l~---~~--~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~--~~  154 (260)
                      ++|..++..|.+.++   |+  ++||||.|+|+|+|+.| ||||++.|+|++.++++++||+.|+.|+++||++..  ++
T Consensus       103 ~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G-~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~f~~  181 (264)
T KOG0863|consen  103 LPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESG-PHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNLEEFED  181 (264)
T ss_pred             ccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCC-ceeEEEcCCccEEEEeeeecccchhhHHHHHHHHHHHHhc
Confidence            999999998876554   43  45999999999999988 999999999999999999999999999999999876  58


Q ss_pred             CCHHHHHHHHHHHHHHHHhhc-CCCCCcEEEEEEEcCCcEEEccCcc
Q psy15384        155 LSEKEGLTLMVDAIKAGILYD-LGSGSKVDVTIIRKNGQVSSYKPYK  200 (260)
Q Consensus       155 ms~eeai~la~~al~~~~~~D-~~sg~~iev~vit~~g~~~~l~~~~  200 (260)
                      ++.||.+..+++||+.....| ..++.|++|+|+.+|.+|.++....
T Consensus       182 ~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~~~d~~~  228 (264)
T KOG0863|consen  182 SSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFTILDQKD  228 (264)
T ss_pred             CCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceEeecHHH
Confidence            999999999999999999755 5678999999999999888884443

>KOG0182|consensus

Probab=100.00  E-value=3e-32  Score=229.13  Aligned_cols=188  Identities=19%  Similarity=0.217  Sum_probs=175.6

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|-|.|++++||++|+++.++.+.      +|++..++..+|+|+.+|+|+++|+.+|++..+.+++.++.++++++|.+
T Consensus        35 ~gltsVavrgkDcavvvsqKkvpD------KLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gye  108 (246)
T KOG0182|consen   35 AGLTSVAVRGKDCAVVVTQKKVPD------KLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYE  108 (246)
T ss_pred             CCCceEEEcCCceEEEEecccCcc------cccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCCC
Confidence            478999999999999999999996      88899999999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCC--
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKEN--  154 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~--  154 (260)
                      +|++.||+.++++.+.|     ++|+||.+++.|+|++-||.+|.+||.|-+..++++|.|-....+.++||++|+++  
T Consensus       109 mp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~  188 (246)
T KOG0182|consen  109 MPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKDID  188 (246)
T ss_pred             CCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccchhhHHHHHHHhhccCcc
Confidence            99999999998765433     57999999999999877799999999999999999999999999999999999987  


Q ss_pred             CCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCc-EEEc
Q psy15384        155 LSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQ-VSSY  196 (260)
Q Consensus       155 ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~-~~~l  196 (260)
                      .|.+|++++++.||...+.-|.. .+.+||.|++++.+ +++|
T Consensus       189 ~t~~e~ve~ai~al~~sl~~Dfk-~se~EVgvv~~~~p~f~~L  230 (246)
T KOG0182|consen  189 LTFEETVETAISALQSSLGIDFK-SSELEVGVVTVDNPEFRIL  230 (246)
T ss_pred             chHHHHHHHHHHHHHHHHhcccC-CcceEEEEEEcCCcceeec
Confidence            67999999999999999999986 58999999999874 7777

>KOG0180|consensus

Probab=99.97  E-value=7.3e-31  Score=214.49  Aligned_cols=186  Identities=20%  Similarity=0.253  Sum_probs=178.4

Q ss_pred             CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCC
Q psy15384          1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHT   80 (260)
Q Consensus         1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~   80 (260)
                      .+|+++|++++||||.||+|.|.-.     -+.-..++.+|||++.|+++++.+|++.|++.|.++++...++|++..++
T Consensus         6 ynGg~vvAM~gk~cvaIa~D~RlG~-----q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R   80 (204)
T KOG0180|consen    6 YNGGSVVAMAGKNCVAIASDLRLGV-----QSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREER   80 (204)
T ss_pred             ecCceEEEEeCCceEEEEeccccce-----eeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhc
Confidence            3799999999999999999999987     46777889999999999999999999999999999999999999999999


Q ss_pred             CCChHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEE-eeCEEEEcCChHHHHHHHHhccCCCCCHH
Q psy15384         81 DIPVICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSH-GHKFCAMGTGLQPAMGILEAGWKENLSEK  158 (260)
Q Consensus        81 ~i~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~-~~~~~aiGsgs~~a~~~Le~~y~~~ms~e  158 (260)
                      ++.++.++++++.++|+.| +||-+.-+|||+|++++|++...|..|... ..+|++.|.++...+++.|..|+|||..|
T Consensus        81 ~i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd  160 (204)
T KOG0180|consen   81 EIKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPD  160 (204)
T ss_pred             ccCcHHHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHH
Confidence            9999999999999999876 799999999999999999999999999998 56899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCC
Q psy15384        159 EGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNG  191 (260)
Q Consensus       159 eai~la~~al~~~~~~D~~sg~~iev~vit~~g  191 (260)
                      +..+.+..||..+++||+.||....+.+|+||+
T Consensus       161 ~LFetisQa~Lna~DRDalSGwGa~vyiI~kdk  193 (204)
T KOG0180|consen  161 ELFETISQALLNAVDRDALSGWGAVVYIITKDK  193 (204)
T ss_pred             HHHHHHHHHHHhHhhhhhhccCCeEEEEEccch
Confidence            999999999999999999999999999999998

>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

Probab=99.97  E-value=5e-29  Score=203.08  Aligned_cols=160  Identities=25%  Similarity=0.304  Sum_probs=152.7

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      +|+||++++||||||+|++.+.     +......+..||+.++++++++++|..+|++.+.++++.+++.|++.++.+++
T Consensus         1 ~t~i~i~~~~gvila~d~~~~~-----~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~   75 (164)
T cd01901           1 STSVAIKGKGGVVLAADKRLSS-----GLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPIS   75 (164)
T ss_pred             CcEEEEEeCCEEEEEEecccCc-----cCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            6899999999999999999998     77776789999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhcc--CcceeeEEEEEEeCCCCceEEEEeecceEEee-CEEEEcCChHHHHHHHHhccCCCCCHHHH
Q psy15384         84 VICPVTMIKQTLYKYH--GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGH-KFCAMGTGLQPAMGILEAGWKENLSEKEG  160 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~--~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~-~~~aiGsgs~~a~~~Le~~y~~~ms~eea  160 (260)
                      +..+++.+++.++.++  +|+++++||||+|+ ++|+||.+||+|++..+ .++++|+++..+.++|++.|+++|+.+|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~  154 (164)
T cd01901          76 VVALAKELAKLLQVYTQGRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEA  154 (164)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHH
Confidence            9999999999988775  79999999999998 55999999999999999 99999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy15384        161 LTLMVDAIK  169 (260)
Q Consensus       161 i~la~~al~  169 (260)
                      ++++.+||.
T Consensus       155 ~~~~~~~l~  163 (164)
T cd01901         155 VELALKALK  163 (164)
T ss_pred             HHHHHHHHh
Confidence            999999986

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t

>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=7.5e-15  Score=119.63  Aligned_cols=170  Identities=22%  Similarity=0.239  Sum_probs=137.7

Q ss_pred             CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecC-eEEEEecCChhHHHHHHHHHHHHHhhcCCCCC
Q psy15384          1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSE-KIYCCGAGSAADMKRLSGLVEANLECQFPKAH   79 (260)
Q Consensus         1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~-~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~   79 (260)
                      +++|||++++-++-|+||+|.+.|.     |+.+...+..|+.+|.. +++.+++|.+||+..|.+++..+++.|.-+. 
T Consensus         2 ~h~TTiv~vr~~gkv~iagDGQVtl-----G~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~L-   75 (178)
T COG5405           2 FHMTTIVAVRKNGKVVIAGDGQVTL-----GNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGDL-   75 (178)
T ss_pred             ceeEEEEEEeeCCeEEEecCceEee-----cceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCcH-
Confidence            4689999999999999999999999     99999999999999965 8999999999999999999999999996221 


Q ss_pred             CCCChHhHHHHHHHHHHh-ccCcceeeEEEEEEeCCCCceEEEEeecceEEe--eCEEEEcCChHHHHHHHHhccCC-CC
Q psy15384         80 TDIPVICPVTMIKQTLYK-YHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHG--HKFCAMGTGLQPAMGILEAGWKE-NL  155 (260)
Q Consensus        80 ~~i~v~~l~~~l~~~l~~-~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~--~~~~aiGsgs~~a~~~Le~~y~~-~m  155 (260)
                          .+.++++.+++... +.+.+.+-++|+  |++   ++|-+...|-..+  .+..|||||..+|.+..+..++. ++
T Consensus        76 ----~raavelaKdwr~Dk~lr~LEAmllVa--d~~---~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~l  146 (178)
T COG5405          76 ----FRAAVELAKDWRTDKYLRKLEAMLLVA--DKT---HILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTEL  146 (178)
T ss_pred             ----HHHHHHHHHhhhhhhHHHHHhhheeEe--CCC---cEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCC
Confidence                24556666666543 234566777776  554   4888999998884  45999999999999999888864 66


Q ss_pred             CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEE
Q psy15384        156 SEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIR  188 (260)
Q Consensus       156 s~eeai~la~~al~~~~~~D~~sg~~iev~vit  188 (260)
                      |   |.+++.++|+.+-+-+.+++.||.|-.+.
T Consensus       147 s---A~eIa~~sl~iA~eiciyTN~ni~ve~l~  176 (178)
T COG5405         147 S---AREIAEKSLKIAGDICIYTNHNIVVEELR  176 (178)
T ss_pred             C---HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence            6   66689999998877777777777766543

>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=8.1e-12  Score=105.47  Aligned_cols=190  Identities=16%  Similarity=0.272  Sum_probs=148.4

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEec---C-eEEEEecCChhHHHHHHHHHHHHHhhcCCCC-
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLS---E-KIYCCGAGSAADMKRLSGLVEANLECQFPKA-   78 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~---~-~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~-   78 (260)
                      |-+||++...|.|+++|+|...     | +-.-...+|+|-..   + -++++.||..|=.|.+++.+.+..+..+... 
T Consensus         2 TYCv~l~l~~GlVf~sDsRTNA-----G-vD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L   75 (255)
T COG3484           2 TYCVGLILDFGLVFGSDSRTNA-----G-VDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSL   75 (255)
T ss_pred             ceEEEEEeccceEEeccccccc-----C-chHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhh
Confidence            5689999999999999999887     4 33345678887664   3 3778999999999999999988876332211 


Q ss_pred             CCCCChHhHHHHHHHH---HHhccC--------cceeeEEEEEEeCCCCceEEEEeecceEEe----eCEEEEcCChHHH
Q psy15384         79 HTDIPVICPVTMIKQT---LYKYHG--------YLMCAFIIGGIDSAGGNQLFSIFQHGSSHG----HKFCAMGTGLQPA  143 (260)
Q Consensus        79 ~~~i~v~~l~~~l~~~---l~~~~~--------p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~----~~~~aiGsgs~~a  143 (260)
                      -.-+++-.++.++...   ++.+..        .|.|++|+||.=..+-|.||.|.|.|++.+    -+|.-+|.. .+-
T Consensus        76 ~n~~sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGEt-KYG  154 (255)
T COG3484          76 LNIPSMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGET-KYG  154 (255)
T ss_pred             hcchhHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEcccc-ccC
Confidence            1123444555555443   232211        489999999987555589999999999995    479999976 578


Q ss_pred             HHHHHhccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccc
Q psy15384        144 MGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKV  201 (260)
Q Consensus       144 ~~~Le~~y~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~  201 (260)
                      +++|++.+..+++++|+.++++-.+...+..++..|-++++.++.+|. +.+-..+.+
T Consensus       155 KPildR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds-~~v~~~~ri  211 (255)
T COG3484         155 KPILDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADS-FSVRHTLRI  211 (255)
T ss_pred             chhhhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccc-eeeeeeeEe
Confidence            999999999999999999999999999999999999999999999998 765555544

>PF12465 Pr_beta_C: Proteasome beta subunits C terminal ; InterPro: IPR024689 This domain is found in the C terminus of beta-type subunits of the proteasome, a multimeric complex that degrades proteins into peptides as part of the MHC class I-mediated Ag-presenting pathway []

Probab=97.75  E-value=1.5e-05  Score=50.38  Aligned_cols=35  Identities=23%  Similarity=0.253  Sum_probs=12.7

Q ss_pred             cCCCCcccccccCCCCCcceeeeeeeeccccccccc
Q psy15384        202 LSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKPSEGK  237 (260)
Q Consensus       202 ~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~~~~~~  237 (260)
                      +|.++.|+..|+||+|||++|++.| ++..++++|.
T Consensus         1 pN~kg~r~~~Ykf~~GTTaVL~e~V-~~~~~v~eE~   35 (38)
T PF12465_consen    1 PNEKGERQGSYKFKRGTTAVLKEKV-PLKLDVVEET   35 (38)
T ss_dssp             TT-----SS-----TT-S-EEEEEE-E---------
T ss_pred             CCcCcccccccccCCCceeeEEEEe-ccEeEEEEEE
Confidence            4678889999999999999999999 7777776654

This domain is approximately 40 amino acids in length. It is found in association with PF00227 from PFAM. It contains a conserved GTT sequence motif and a single completely conserved residue Y that may be functionally important.; PDB: 3UN8_H 2GPL_V 3E47_H 3OEV_H 3SDK_V 3BDM_H 3GPJ_H 3DY3_H 3NZW_H 3OEU_V ....

>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.51  E-value=0.17  Score=43.19  Aligned_cols=50  Identities=18%  Similarity=0.160  Sum_probs=43.3

Q ss_pred             HHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcC
Q psy15384        141 QPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKN  190 (260)
Q Consensus       141 ~~a~~~Le~~y~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~  190 (260)
                      +.|...|.++|++.|+++++..+..++|+.+...-+..+..+++...++.
T Consensus       131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~  180 (194)
T PF09894_consen  131 EIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK  180 (194)
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence            45778899999999999999999999999998777777788998887654

They do show distant similarity to NTPases and to nucleic acid binding enzymes.

>COG4079 Uncharacterized protein conserved in archaea [Function unknown]

Probab=93.40  E-value=5.4  Score=35.45  Aligned_cols=152  Identities=11%  Similarity=0.092  Sum_probs=93.1

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      |-+|+-.++||.|||.|+|.-                           .+-|.-.|.+.|-+.         +..|.--+
T Consensus         2 tLviay~gknGaviaGDrR~i---------------------------~frgdee~re~lEek---------LYsGeIkt   45 (293)
T COG4079           2 TLVIAYIGKNGAVIAGDRREI---------------------------TFRGDEEDREKLEEK---------LYSGEIKT   45 (293)
T ss_pred             eEEEEEecCCCcEEeccceEE---------------------------EEecChhHHHHHHHH---------hhcCcccc
Confidence            568999999999999998753                           344555665555443         23454445


Q ss_pred             hHhHHHHHHHHH-----Hhcc---CcceeeEEEEEEeCCC-----CceEEEE-------eecceEEe-------eCEEEE
Q psy15384         84 VICPVTMIKQTL-----YKYH---GYLMCAFIIGGIDSAG-----GNQLFSI-------FQHGSSHG-------HKFCAM  136 (260)
Q Consensus        84 v~~l~~~l~~~l-----~~~~---~p~g~sliiaG~D~~g-----~p~Ly~i-------dp~Gs~~~-------~~~~ai  136 (260)
                      -++|++.+..+-     +..+   +-..-++++|-+..-+     .-++|.+       +-.|+...       ..+.+.
T Consensus        46 eEEL~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~  125 (293)
T COG4079          46 EEELARKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVF  125 (293)
T ss_pred             HHHHHHHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEE
Confidence            566666655531     1111   1234455555554322     1234432       22222211       112333


Q ss_pred             cCC--hHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCC
Q psy15384        137 GTG--LQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNG  191 (260)
Q Consensus       137 Gsg--s~~a~~~Le~~y~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g  191 (260)
                      |..  -..+..+|.++|.+.++++++.++..++|..+...-...++.+++....+.-
T Consensus       126 Gnk~~Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~  182 (293)
T COG4079         126 GNKFTKEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNV  182 (293)
T ss_pred             CcHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCc
Confidence            322  2346778999999999999999999999998876667778899999887643

>KOG3361|consensus

Probab=92.33  E-value=0.38  Score=38.64  Aligned_cols=43  Identities=23%  Similarity=0.343  Sum_probs=40.1

Q ss_pred             EEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHH
Q psy15384        120 FSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLT  162 (260)
Q Consensus       120 y~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~  162 (260)
                      ..+|-+|.....+|-..|.||..|-+-+-..|-.++|+|||.+
T Consensus        71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~k  113 (157)
T KOG3361|consen   71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALK  113 (157)
T ss_pred             EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHh
Confidence            5688899999999999999999999999999999999999973

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	260
1iru_I	234	Crystal Structure Of The Mammalian 20s Proteasome A		8e-42
3nzj_H	261	Crystal Structure Of Yeast 20s Proteasome In Comple		3e-41
3unb_H	234	Mouse Constitutive 20s Proteasome In Complex With P		8e-41
1fnt_I	232	Crystal Structure Of The 20s Proteasome From Yeast		7e-40
1ryp_I	222	Crystal Structure Of The 20s Proteasome From Yeast		8e-40
3unf_H	234	Mouse 20s Immunoproteasome In Complex With Pr-957 L		3e-35
3h4p_a	219	Proteasome 20s Core Particle From Methanocaldococcu		1e-17
1iru_H	205	Crystal Structure Of The Mammalian 20s Proteasome A		5e-17
3nzj_N	215	Crystal Structure Of Yeast 20s Proteasome In Comple		8e-17
3unb_N	205	Mouse Constitutive 20s Proteasome In Complex With P		2e-16
1ryp_H	205	Crystal Structure Of The 20s Proteasome From Yeast		3e-16
1g65_N	196	Crystal Structure Of Epoxomicin:20s Proteasome Reve		3e-16
1ya7_H	217	Implications For Interactions Of Proteasome With Pa		5e-16
1pma_B	211	Proteasome From Thermoplasma Acidophilum Length = 2		5e-16
1vsy_H	196	Proteasome Activator Complex Length = 196		1e-15
3c91_H	203	Thermoplasma Acidophilum 20s Proteasome With An Ope		8e-15
1j2q_H	202	20s Proteasome In Complex With Calpain-inhibitor I		3e-13
3unf_N	199	Mouse 20s Immunoproteasome In Complex With Pr-957 L		3e-10
1z7q_C	258	Crystal Structure Of The 20s Proteasome From Yeast		5e-09
1g0u_B	245	A Gated Channel Into The Proteasome Core Particle L		6e-09
1ryp_C	244	Crystal Structure Of The 20s Proteasome From Yeast		6e-09
1vsy_C	232	Proteasome Activator Complex Length = 232		7e-09
3oeu_B	235	Structure Of Yeast 20s Open-Gate Proteasome With Co		7e-09
3jrm_A	227	Crystal Structure Of Archaeal 20s Proteasome In Com		2e-08
2ku1_A	237	Dynamic Regulation Of Archaeal Proteasome Gate Open		2e-08
1pma_A	233	Proteasome From Thermoplasma Acidophilum Length = 2		2e-08
1yar_A	233	Structure Of Archeabacterial 20s Proteasome Mutant		2e-08
1yau_A	233	Structure Of Archeabacterial 20s Proteasome- Pa26 C		2e-08
2ku2_A	237	Dynamic Regulation Of Archaeal Proteasome Gate Open		3e-08
3h4p_A	264	Proteasome 20s Core Particle From Methanocaldococcu		2e-07
3une_C	248	Mouse Constitutive 20s Proteasome Length = 248		1e-06
3nzj_K	287	Crystal Structure Of Yeast 20s Proteasome In Comple		2e-06
3unf_K	204	Mouse 20s Immunoproteasome In Complex With Pr-957 L		2e-06
1iru_D	248	Crystal Structure Of The Mammalian 20s Proteasome A		3e-06
4b4t_5	287	Near-Atomic Resolution Structural Model Of The Yeas		3e-06
3unb_C	248	Mouse Constitutive 20s Proteasome In Complex With P		4e-06
1iru_L	204	Crystal Structure Of The Mammalian 20s Proteasome A		6e-06
1j2p_A	246	Alpha-Ring From The Proteasome From Archaeoglobus F		6e-06
3unb_K	205	Mouse Constitutive 20s Proteasome In Complex With P		6e-06
1j2q_A	237	20s Proteasome In Complex With Calpain-inhibitor I		1e-05
1g0u_K	212	A Gated Channel Into The Proteasome Core Particle L		2e-05
1iru_C	261	Crystal Structure Of The Mammalian 20s Proteasome A		3e-05
1ryp_L	212	Crystal Structure Of The 20s Proteasome From Yeast		4e-05
3unb_B	261	Mouse Constitutive 20s Proteasome In Complex With P		8e-05
1g0u_D	241	A Gated Channel Into The Proteasome Core Particle L		1e-04
4g4s_E	261	Structure Of Proteasome-Pba1-Pba2 Complex Length =		2e-04
1fnt_E	260	Crystal Structure Of The 20s Proteasome From Yeast		2e-04
2z5c_C	262	Crystal Structure Of A Novel Chaperone Complex For		2e-04
1ryp_E	242	Crystal Structure Of The 20s Proteasome From Yeast		2e-04
1vsy_E	250	Proteasome Activator Complex Length = 250		2e-04
1iru_M	213	Crystal Structure Of The Mammalian 20s Proteasome A		6e-04

>pdb|1IRU|I Chain I, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 234

Iteration: 1
 Score =  167 bits (422), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 89/227 (39%), Positives = 137/227 (60%), Gaps = 7/227 (3%)
Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI G++Y+DG++LGADTRAT        ++ D NCSKI+ +S  IYCCGAG+AAD    
Sbjct: 1   TTIAGVVYKDGIVLGADTRAT-----EGMVVADKNCSKIHFISPNIYCCGAGTAADTDMT 55
Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
           + L+ +NLE           V+    M+KQ L++Y GY+  A ++GG+D   G  L+SI+
Sbjct: 56  TQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVD-VTGPHLYSIY 114
Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
            HGS+    +  MG+G   AM + E  ++ ++ E+E   L+ +AI AGI  DLGSGS +D
Sbjct: 115 PHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNID 174
Query: 184 VTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
           + +I KN ++   +PY V + +  +  +     GTT VL+ ++ P+E
Sbjct: 175 LCVISKN-KLDFLRPYTVPNKKGTRLGRYRCEKGTTAVLTEKITPLE 220

>pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 261

Iteration: 1
 Score =  164 bits (416), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 136/228 (59%), Gaps = 6/228 (2%)
Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTI G+ + +GV++ ADTR+T        I+ D NC+K++R+S KI+C GAG+AAD +
Sbjct: 28  TGTTIVGVKFNNGVVIAADTRSTQ-----GPIVADKNCAKLHRISPKIWCAGAGTAADTE 82
Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
            ++ L+ +N+E        +  V+  + M+KQ L+KY G++    I+ G+D  G + LFS
Sbjct: 83  AVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTG-SHLFS 141
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           I  HGS+    + ++G+G   AM +LE+ WK++L+++E + L  DAI+AGI  DLGSGS 
Sbjct: 142 IHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSN 201
Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPI 229
           VDV ++         + Y   + R  K      P GTT VL   ++ I
Sbjct: 202 VDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTAVLKESIVNI 249

>pdb|3UNB|H Chain H, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 234

Iteration: 1
 Score =  163 bits (413), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 88/227 (38%), Positives = 137/227 (60%), Gaps = 7/227 (3%)
Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI G++Y+DG++LGADTRAT        ++ D NCSKI+ +S  IYCCGAG+AAD    
Sbjct: 1   TTIAGVVYKDGIVLGADTRAT-----EGMVVADKNCSKIHFISPNIYCCGAGTAADTDMT 55
Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
           + L+ +NLE           V+    M+KQ L++Y GY+  A ++GG+D   G  L+SI+
Sbjct: 56  TQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIY 114
Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
            HGS+    +  MG+G   AM + E  ++ ++ E+E   L+ +AI AGI  DLGSGS +D
Sbjct: 115 PHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNID 174
Query: 184 VTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
           + +I K+ ++   +P+ V + +  +  +     GTT VL+ +V P+E
Sbjct: 175 LCVISKS-KLDFLRPFSVPNKKGTRLGRYRCEKGTTAVLTEKVTPLE 220

>pdb|1FNT|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 232

Iteration: 1
 Score =  160 bits (405), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 134/226 (59%), Gaps = 6/226 (2%)
Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI G+ + +GV++ ADTR+T        I+ D NC+K++R+S KI+C GAG+AAD + +
Sbjct: 1   TTIVGVKFNNGVVIAADTRSTQ-----GPIVADKNCAKLHRISPKIWCAGAGTAADTEAV 55
Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
           + L+ +N+E        +  V+  + M+KQ L+KY G++    I+ G+D  G + LFSI 
Sbjct: 56  TQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTG-SHLFSIH 114
Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
            HGS+    + ++G+G   AM +LE+ WK++L+++E + L  DAI+AGI  DLGSGS VD
Sbjct: 115 AHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVD 174
Query: 184 VTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPI 229
           V ++         + Y   + R  K      P GTT VL   ++ I
Sbjct: 175 VCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTAVLKESIVNI 220

>pdb|1RYP|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 222

Iteration: 1
 Score =  160 bits (404), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 134/226 (59%), Gaps = 6/226 (2%)
Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI G+ + +GV++ ADTR+T        I+ D NC+K++R+S KI+C GAG+AAD + +
Sbjct: 1   TTIVGVKFNNGVVIAADTRSTQ-----GPIVADKNCAKLHRISPKIWCAGAGTAADTEAV 55
Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
           + L+ +N+E        +  V+  + M+KQ L+KY G++    I+ G+D  G + LFSI 
Sbjct: 56  TQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTG-SHLFSIH 114
Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
            HGS+    + ++G+G   AM +LE+ WK++L+++E + L  DAI+AGI  DLGSGS VD
Sbjct: 115 AHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVD 174
Query: 184 VTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPI 229
           V ++         + Y   + R  K      P GTT VL   ++ I
Sbjct: 175 VCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTAVLKESIVNI 220

>pdb|3UNF|H Chain H, Mouse 20s Immunoproteasome In Complex With Pr-957 Length = 234

Iteration: 1
 Score =  145 bits (365), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 129/226 (57%), Gaps = 7/226 (3%)
Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI GL++ DGVILGADTRAT       S++ D +C KI+ ++ KIYCCGAG AAD +  
Sbjct: 1   TTIAGLVFRDGVILGADTRAT-----NDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMT 55
Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
           + +  + +E        +  V     +++QTL++Y G++  + ++GG+D   G QL+ + 
Sbjct: 56  TRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVD-LNGPQLYEVH 114
Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
            HGS     F A+G+G   A+ +LE  ++ N++ +    L+V+AI AGIL DLGSG  VD
Sbjct: 115 PHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVD 174
Query: 184 VTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPI 229
             +I   G     +     ++ + +  +     GTT VL+ +V P+
Sbjct: 175 ACVITAGG-AKLQRALSTPTEPVQRAGRYRFAPGTTPVLTREVRPL 219

>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus Jannaschii Length = 219

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 7/190 (3%)
Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TT  GL+ +D VIL  D RA++      +++ D    K+ ++ + I    AGS  D + +
Sbjct: 2   TTTVGLICDDAVILATDKRASL-----GNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAI 56
Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSI 122
             L+ A  +    +   +IP +   T++   L+    +  +   IIGG D   G +LFS+
Sbjct: 57  VRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSL 116
Query: 123 FQHGSSHGHK-FCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
              G  +  K F A G+G   A G+LEAG+  ++S +EG+ L ++A+K+ +  D  SG+ 
Sbjct: 117 DPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNG 176
Query: 182 VDVTIIRKNG 191
           + + +I K+G
Sbjct: 177 ISLAVITKDG 186

>pdb|1IRU|H Chain H, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 205

Iteration: 1
 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 102/212 (48%), Gaps = 9/212 (4%)
Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI  + ++ GV+LGAD+R T       S + +    K+  + ++I+CC +GSAAD + +
Sbjct: 1   TTIMAVQFDGGVVLGADSRTTT-----GSYIANRVTDKLTPIHDRIFCCRSGSAADTQAV 55
Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
           +  V   L     + +    V    ++ K+  Y+Y   LM   II G D   G Q++S+ 
Sbjct: 56  ADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVP 115
Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
             G      F   G+G     G ++A ++E ++++E L    +A+   +  D  SG  + 
Sbjct: 116 MGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIR 175
Query: 184 VTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIP 215
           +  I ++G     +   +L D++PK     +P
Sbjct: 176 LAAIAESG----VERQVLLGDQIPKFAVATLP 203

>pdb|3NZJ|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 215

Iteration: 1
 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 98/192 (51%), Gaps = 12/192 (6%)
Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           GT+I  + ++DGVILGAD+R T       + + +    K+ R+ +KI+CC +GSAAD + 
Sbjct: 19  GTSIMAVTFKDGVILGADSRTTT-----GAYIANRVTDKLTRVHDKIWCCRSGSAADTQA 73
Query: 63  LSGLVEANLE---CQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQL 119
           ++ +V+ +LE    Q+    T+       ++ K+  Y+    L    I+ G D     ++
Sbjct: 74  IADIVQYHLELYTSQYGTPSTE----TAASVFKELCYENKDNLTAGIIVAGYDDKNKGEV 129
Query: 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSG 179
           ++I   GS H   +   G+G     G  +  ++EN+S++E +  +  ++   I +D  SG
Sbjct: 130 YTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSG 189
Query: 180 SKVDVTIIRKNG 191
             + + ++   G
Sbjct: 190 GVIRMVVLTAAG 201

>pdb|3UNB|N Chain N, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 205

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 9/212 (4%)
Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI  + +  GV+LGAD+R T       S + +    K+  + + I+CC +GSAAD + +
Sbjct: 1   TTIMAVQFNGGVVLGADSRTTT-----GSYIANRVTDKLTPIHDHIFCCRSGSAADTQAV 55
Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
           +  V   L     + +    V    ++ K+  Y+Y   LM   II G D   G Q++S+ 
Sbjct: 56  ADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVP 115
Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
             G      F   G+G     G ++A ++E +++ E L    +A+   +  D  SG  + 
Sbjct: 116 MGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIR 175
Query: 184 VTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIP 215
           +  I+++G     +   +L D++PK     +P
Sbjct: 176 LAAIQESG----VERQVLLGDQIPKFTIATLP 203

>pdb|1RYP|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 205

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 97/192 (50%), Gaps = 12/192 (6%)
Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           G +I  + ++DGVILGAD+R T       + + +    K+ R+ +KI+CC +GSAAD + 
Sbjct: 9   GASIMAVTFKDGVILGADSRTTT-----GAYIANRVTDKLTRVHDKIWCCRSGSAADTQA 63
Query: 63  LSGLVEANLE---CQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQL 119
           ++ +V+ +LE    Q+    T+       ++ K+  Y+    L    I+ G D     ++
Sbjct: 64  IADIVQYHLELYTSQYGTPSTE----TAASVFKELCYENKDNLTAGIIVAGYDDKNKGEV 119
Query: 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSG 179
           ++I   GS H   +   G+G     G  +  ++EN+S++E +  +  ++   I +D  SG
Sbjct: 120 YTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSG 179
Query: 180 SKVDVTIIRKNG 191
             + + ++   G
Sbjct: 180 GVIRMVVLTAAG 191

>pdb|1G65|N Chain N, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A Molecular Basis For Selectivity Of Alpha,Beta-Epoxyketone Proteasome Inhibitors Length = 196

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 97/191 (50%), Gaps = 12/191 (6%)
Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           T+I  + ++DGVILGAD+R T       + + +    K+ R+ +KI+CC +GSAAD + +
Sbjct: 1   TSIMAVTFKDGVILGADSRTTT-----GAYIANRVTDKLTRVHDKIWCCRSGSAADTQAI 55
Query: 64  SGLVEANLE---CQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLF 120
           + +V+ +LE    Q+    T+       ++ K+  Y+    L    I+ G D     +++
Sbjct: 56  ADIVQYHLELYTSQYGTPSTE----TAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVY 111
Query: 121 SIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGS 180
           +I   GS H   +   G+G     G  +  ++EN+S++E +  +  ++   I +D  SG 
Sbjct: 112 TIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGG 171
Query: 181 KVDVTIIRKNG 191
            + + ++   G
Sbjct: 172 VIRMVVLTAAG 182

>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And Pa700 From The 1.9 A Structure Of A Proteasome-11s Activator Complex Length = 217

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 11/195 (5%)
Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTT  G+  +D VI+  + R TM++      ++  N  K+ ++        AG   D +
Sbjct: 7   TGTTTVGITLKDAVIMATERRVTMEN-----FIMHKNGKKLFQIDTYTGMTIAGLVGDAQ 61
Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTL--YKYHGYLMCAFIIGGIDSAGGNQL 119
            L   ++A LE    +   ++P+    T++   L   KY  Y M   ++GGID+A    +
Sbjct: 62  VLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPY-MVQLLVGGIDTA--PHV 118
Query: 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSG 179
           FSI   G S    + + G+G     G+LE+ + E ++  EG+ L++ AI A    D  SG
Sbjct: 119 FSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASG 178
Query: 180 SKVDVTII-RKNGQV 193
             +DV +I RK+G V
Sbjct: 179 GMIDVAVITRKDGYV 193

>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum Length = 211

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 11/195 (5%)
Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTT  G+  +D VI+  + R TM++      ++  N  K+ ++        AG   D +
Sbjct: 7   TGTTTVGITLKDAVIMATERRVTMEN-----FIMHKNGKKLFQIDTYTGMTIAGLVGDAQ 61
Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTL--YKYHGYLMCAFIIGGIDSAGGNQL 119
            L   ++A LE    +   ++P+    T++   L   KY  Y M   ++GGID+A    +
Sbjct: 62  VLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPY-MVQLLVGGIDTA--PHV 118
Query: 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSG 179
           FSI   G S    + + G+G     G+LE+ + E ++  EG+ L++ AI A    D  SG
Sbjct: 119 FSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASG 178
Query: 180 SKVDVTII-RKNGQV 193
             +DV +I RK+G V
Sbjct: 179 GMIDVAVITRKDGYV 193

>pdb|1VSY|H Chain H, Proteasome Activator Complex Length = 196

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 96/190 (50%), Gaps = 12/190 (6%)
Query: 5   TICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLS 64
           +I  + ++DGVILGAD+R T       + + +    K+ R+ +KI+CC +GSAAD + ++
Sbjct: 2   SIMAVTFKDGVILGADSRTTT-----GAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIA 56
Query: 65  GLVEANLE---CQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
            +V+ +LE    Q+    T+       ++ K+  Y+    L    I+ G D     ++++
Sbjct: 57  DIVQYHLELYTSQYGTPSTE----TAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYT 112
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           I   GS H   +   G+G     G  +  ++EN+S++E +  +  ++   I +D  SG  
Sbjct: 113 IPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGV 172
Query: 182 VDVTIIRKNG 191
           + + ++   G
Sbjct: 173 IRMVVLTAAG 182

>pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate Length = 203

Iteration: 1
 Score = 77.4 bits (189), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 11/193 (5%)
Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TT  G+  +D VI+  + R TM++      ++  N  K+ ++        AG   D + L
Sbjct: 1   TTTVGITLKDAVIMATERRVTMEN-----FIMHKNGKKLFQIDTYTGMTIAGLVGDAQVL 55
Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTL--YKYHGYLMCAFIIGGIDSAGGNQLFS 121
              ++A LE    +   ++P+    T++   L   KY  Y M   ++GGID+A    +FS
Sbjct: 56  VRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPY-MVQLLVGGIDTA--PHVFS 112
Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           I   G S    + + G+G     G+LE+ + E ++  EG+ L++ AI A    D  SG  
Sbjct: 113 IDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGM 172
Query: 182 VDVTII-RKNGQV 193
           +DV +I RK+G V
Sbjct: 173 IDVAVITRKDGYV 185

>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From Archaeoglobus Fulgidus Length = 202

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 98/201 (48%), Gaps = 11/201 (5%)
Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TT  GL+ +DGV++  + RATM      + +      KI ++++++    AGS  D + L
Sbjct: 1   TTTVGLVCKDGVVMATEKRATM-----GNFIASKAAKKIYQIADRMAMTTAGSVGDAQFL 55
Query: 64  SGLV--EANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
           + ++  EANL     +    +  I  +T      Y+Y  YL+   +IGGIDS G   ++S
Sbjct: 56  ARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLV-QLLIGGIDSEG-KSIYS 113
Query: 122 IFQHGSSHGHK-FCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGS 180
           I   G +   K   A G+G   A G+LE  +   +   E + L V AI + +  D  SG 
Sbjct: 114 IDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGD 173
Query: 181 KVDVTIIRKNGQVSSYKPYKV 201
            +DV  I ++ +   Y P +V
Sbjct: 174 GIDVVKITED-EFYQYSPEEV 193

>pdb|3UNF|N Chain N, Mouse 20s Immunoproteasome In Complex With Pr-957 Length = 199

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 92/205 (44%), Gaps = 10/205 (4%)
Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI  + ++ GV++G+D+R      S  + +++    K++ L ++I+C  +GSAAD + +
Sbjct: 1   TTIMAVEFDGGVVVGSDSRV-----SAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAI 55
Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
           + +    LE    +      V+    ++K   YKY   L+   I+ G D   G Q++   
Sbjct: 56  ADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTM 115
Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
             G      F   G+G     G ++A +K  ++ +E      +AI   +  D  SG  + 
Sbjct: 116 G-GMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIY 174
Query: 184 VTIIRKNGQVSSYKPYKVLSDRMPK 208
           +  I   G         +L D +PK
Sbjct: 175 LVTITAAG----VDHRVILGDELPK 195

>pdb|1Z7Q|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 258

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 100/215 (46%), Gaps = 31/215 (14%)
Query: 5   TICGLLYEDGVILGADTRATMKDASGSSILIDHNCS--KINRLSEKIYCCGAGSAADMKR 62
           T  G++  DG++L A+ + T       S L++ + S  K+ +L++KI    AG  AD + 
Sbjct: 34  TAIGIMASDGIVLAAERKVT-------STLLEQDTSTEKLYKLNDKIAVAVAGLTADAEI 86
Query: 63  LSGLVEANLECQFPKAHTDIPV---ICPVTMIKQTLYKYHGYLM---CAFIIGGIDSAGG 116
           L      + +      + DIPV   +  ++ IKQ  Y  HG L     +FI  G D   G
Sbjct: 87  LINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQG-YTQHGGLRPFGVSFIYAGYDDRYG 145
Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAI-----KAG 171
            QL++    G+  G K  ++G     A  +L+  +K+++   + + L +  +      + 
Sbjct: 146 YQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSA 205
Query: 172 ILYDLGSGSKVDVTIIRK---NGQVSS--YKPYKV 201
           + YD     +++   IRK   +G+V    +KP ++
Sbjct: 206 LTYD-----RLEFATIRKGANDGEVYQKIFKPQEI 235

>pdb|1G0U|B Chain B, A Gated Channel Into The Proteasome Core Particle Length = 245

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 100/215 (46%), Gaps = 31/215 (14%)
Query: 5   TICGLLYEDGVILGADTRATMKDASGSSILIDHNCS--KINRLSEKIYCCGAGSAADMKR 62
           T  G++  DG++L A+ + T       S L++ + S  K+ +L++KI    AG  AD + 
Sbjct: 34  TAIGIMASDGIVLAAERKVT-------STLLEQDTSTEKLYKLNDKIAVAVAGLTADAEI 86
Query: 63  LSGLVEANLECQFPKAHTDIPV---ICPVTMIKQTLYKYHGYLM---CAFIIGGIDSAGG 116
           L      + +      + DIPV   +  ++ IKQ  Y  HG L     +FI  G D   G
Sbjct: 87  LINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQG-YTQHGGLRPFGVSFIYAGYDDRYG 145
Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAI-----KAG 171
            QL++    G+  G K  ++G     A  +L+  +K+++   + + L +  +      + 
Sbjct: 146 YQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSA 205
Query: 172 ILYDLGSGSKVDVTIIRK---NGQVSS--YKPYKV 201
           + YD     +++   IRK   +G+V    +KP ++
Sbjct: 206 LTYD-----RLEFATIRKGANDGEVYQKIFKPQEI 235

>pdb|1RYP|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 244

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 100/215 (46%), Gaps = 31/215 (14%)
Query: 5   TICGLLYEDGVILGADTRATMKDASGSSILIDHNCS--KINRLSEKIYCCGAGSAADMKR 62
           T  G++  DG++L A+ + T       S L++ + S  K+ +L++KI    AG  AD + 
Sbjct: 33  TAIGIMASDGIVLAAERKVT-------STLLEQDTSTEKLYKLNDKIAVAVAGLTADAEI 85
Query: 63  LSGLVEANLECQFPKAHTDIPV---ICPVTMIKQTLYKYHGYLM---CAFIIGGIDSAGG 116
           L      + +      + DIPV   +  ++ IKQ  Y  HG L     +FI  G D   G
Sbjct: 86  LINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQG-YTQHGGLRPFGVSFIYAGYDDRYG 144
Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAI-----KAG 171
            QL++    G+  G K  ++G     A  +L+  +K+++   + + L +  +      + 
Sbjct: 145 YQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSA 204
Query: 172 ILYDLGSGSKVDVTIIRK---NGQVSS--YKPYKV 201
           + YD     +++   IRK   +G+V    +KP ++
Sbjct: 205 LTYD-----RLEFATIRKGANDGEVYQKIFKPQEI 234

>pdb|1VSY|C Chain C, Proteasome Activator Complex Length = 232

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 100/215 (46%), Gaps = 31/215 (14%)
Query: 5   TICGLLYEDGVILGADTRATMKDASGSSILIDHNCS--KINRLSEKIYCCGAGSAADMKR 62
           T  G++  DG++L A+ + T       S L++ + S  K+ +L++KI    AG  AD + 
Sbjct: 21  TAIGIMASDGIVLAAERKVT-------STLLEQDTSTEKLYKLNDKIAVAVAGLTADAEI 73
Query: 63  LSGLVEANLECQFPKAHTDIPV---ICPVTMIKQTLYKYHGYLM---CAFIIGGIDSAGG 116
           L      + +      + DIPV   +  ++ IKQ  Y  HG L     +FI  G D   G
Sbjct: 74  LINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQG-YTQHGGLRPFGVSFIYAGYDDRYG 132
Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAI-----KAG 171
            QL++    G+  G K  ++G     A  +L+  +K+++   + + L +  +      + 
Sbjct: 133 YQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSA 192
Query: 172 ILYDLGSGSKVDVTIIRK---NGQVSS--YKPYKV 201
           + YD     +++   IRK   +G+V    +KP ++
Sbjct: 193 LTYD-----RLEFATIRKGANDGEVYQKIFKPQEI 222

>pdb|3OEU|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound 24 Length = 235

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 100/215 (46%), Gaps = 31/215 (14%)
Query: 5   TICGLLYEDGVILGADTRATMKDASGSSILIDHNCS--KINRLSEKIYCCGAGSAADMKR 62
           T  G++  DG++L A+ + T       S L++ + S  K+ +L++KI    AG  AD + 
Sbjct: 24  TAIGIMASDGIVLAAERKVT-------STLLEQDTSTEKLYKLNDKIAVAVAGLTADAEI 76
Query: 63  LSGLVEANLECQFPKAHTDIPV---ICPVTMIKQTLYKYHGYLM---CAFIIGGIDSAGG 116
           L      + +      + DIPV   +  ++ IKQ  Y  HG L     +FI  G D   G
Sbjct: 77  LINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQG-YTQHGGLRPFGVSFIYAGYDDRYG 135
Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAI-----KAG 171
            QL++    G+  G K  ++G     A  +L+  +K+++   + + L +  +      + 
Sbjct: 136 YQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSA 195
Query: 172 ILYDLGSGSKVDVTIIRK---NGQVSS--YKPYKV 201
           + YD     +++   IRK   +G+V    +KP ++
Sbjct: 196 LTYD-----RLEFATIRKGANDGEVYQKIFKPQEI 225

>pdb|3JRM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex With Mutated P26 Activator Length = 227

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
           G+T  G+ + +GV+L +D +         S LI+ N   KI  + + +    +G  AD +
Sbjct: 28  GSTALGMKFANGVLLISDKKV-------RSRLIEQNSIEKIQLIDDYVAAVTSGLVADAR 80
Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-----LMCAFIIGGIDSAGG 116
            L      + + +     + + +   V  +   + +Y  Y        + I  GID  G 
Sbjct: 81  VLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGP 140
Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGI 172
            +LF     G+ + +K  A+G+G    +  LE  +KENL EKE +TL + A+K+ +
Sbjct: 141 -RLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSL 195

>pdb|2KU1|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As Studied By Trosy-Nmr Length = 237

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
           G+T  G+ + +GV+L +D +         S LI+ N   KI  + + +    +G  AD +
Sbjct: 38  GSTALGMKFANGVLLISDKKV-------RSRLIEQNSIEKIQLIDDYVAAVTSGLVADAR 90
Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-----LMCAFIIGGIDSAGG 116
            L      + + +     + + +   V  +   + +Y  Y        + I  GID  G 
Sbjct: 91  VLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIG- 149
Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGI 172
            +LF     G+ + +K  A+G+G    +  LE  +KENL EKE +TL + A+K+ +
Sbjct: 150 PRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSL 205

>pdb|1PMA|A Chain A, Proteasome From Thermoplasma Acidophilum Length = 233

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
           G+T  G+ + +GV+L +D +         S LI+ N   KI  + + +    +G  AD +
Sbjct: 34  GSTALGMKFANGVLLISDKKV-------RSRLIEQNSIEKIQLIDDYVAAVTSGLVADAR 86
Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-----LMCAFIIGGIDSAGG 116
            L      + + +     + + +   V  +   + +Y  Y        + I  GID  G 
Sbjct: 87  VLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIG- 145
Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGI 172
            +LF     G+ + +K  A+G+G    +  LE  +KENL EKE +TL + A+K+ +
Sbjct: 146 PRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSL 201

>pdb|1YAR|A Chain A, Structure Of Archeabacterial 20s Proteasome Mutant D9s- Pa26 Complex Length = 233

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
           G+T  G+ + +GV+L +D +         S LI+ N   KI  + + +    +G  AD +
Sbjct: 34  GSTALGMKFANGVLLISDKKV-------RSRLIEQNSIEKIQLIDDYVAAVTSGLVADAR 86
Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-----LMCAFIIGGIDSAGG 116
            L      + + +     + + +   V  +   + +Y  Y        + I  GID  G 
Sbjct: 87  VLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIG- 145
Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGI 172
            +LF     G+ + +K  A+G+G    +  LE  +KENL EKE +TL + A+K+ +
Sbjct: 146 PRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSL 201

>pdb|1YAU|A Chain A, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex Length = 233

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
           G+T  G+ + +GV+L +D +         S LI+ N   KI  + + +    +G  AD +
Sbjct: 34  GSTALGMKFANGVLLISDKKV-------RSRLIEQNSIEKIQLIDDYVAAVTSGLVADAR 86
Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-----LMCAFIIGGIDSAGG 116
            L      + + +     + + +   V  +   + +Y  Y        + I  GID  G 
Sbjct: 87  VLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIG- 145
Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGI 172
            +LF     G+ + +K  A+G+G    +  LE  +KENL EKE +TL + A+K+ +
Sbjct: 146 PRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSL 201

>pdb|2KU2|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As Studied By Trosy-Nmr Length = 237

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
           G+T  G+ + +GV+L +D +         S LI+ N   KI  + + +    +G  AD +
Sbjct: 38  GSTALGMKFANGVLLISDKKV-------RSRLIEQNSIEKIQLIDDYVAAVTSGLVADAR 90
Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-----LMCAFIIGGIDSAGG 116
            L      + + +     + + +   V  +   + +Y  Y        + I  GID  G 
Sbjct: 91  VLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIG- 149
Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGI 172
            +LF     G+ + +K  A+G+G    +  LE  +KENL EKE +TL + A+K+ +
Sbjct: 150 PRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSL 205

>pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus Jannaschii Length = 264

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           GTT  G+  +DGV+L  D R T K     SI       KI ++ + +    +G  AD + 
Sbjct: 38  GTTAIGIACKDGVVLAVDRRITSKLVKIRSI------EKIFQIDDHVAAATSGLVADARV 91
Query: 63  LSGLVEANLECQFPK----AHTDIPVICP-VTMIKQTLYKYHGYLM---CAFIIGGIDSA 114
           L  +  A LE Q  +        I ++   +  IKQ  Y  HG +     + +I GID  
Sbjct: 92  L--IDRARLEAQIYRLTYGEEISIEMLAKKICDIKQA-YTQHGGVRPFGVSLLIAGIDK- 147
Query: 115 GGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAI 168
              +LF     G+   +K  A+G+G    M +LE  ++++++  EGL L + A+
Sbjct: 148 NEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITAL 201

>pdb|3UNE|C Chain C, Mouse Constitutive 20s Proteasome Length = 248

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 95/209 (45%), Gaps = 24/209 (11%)
Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           G+T  G+  +D V+LG + ++  K      +  +    KI  L + +    AG  AD + 
Sbjct: 29  GSTAVGVRGKDIVVLGVEKKSVAK------LQDERTVRKICALDDNVCMAFAGLTADARI 82
Query: 63  LSGLVEANLECQFPKAHTDIPVICP-----VTMIKQTLYKYHG---YLMCAFIIGGIDSA 114
           +  +  A +ECQ  +   + PV        +  +KQ   + +G   + + A I+G  D  
Sbjct: 83  V--INRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVG-FDFD 139
Query: 115 GGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILY 174
           G  +L+     G+ H  K  A+G G +     LE  + ++  E + LT+ +  IKA +  
Sbjct: 140 GTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKL-VIKALLEV 198
Query: 175 DLGSGSKVDVTIIRKNGQVSSYKPYKVLS 203
               G  +++ ++R++      +P K+L+
Sbjct: 199 VQSGGKNIELAVMRRD------QPLKILN 221

>pdb|3NZJ|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 287

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 8/193 (4%)
Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           GTT     ++ G+I+  D+RAT  +   S  +      K+  ++  +    AG AAD + 
Sbjct: 75  GTTTLAFRFQGGIIVAVDSRATAGNWVASQTV-----KKVIEINPFLLGTMAGGAADCQF 129
Query: 63  LSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFS 121
               + +       +    I V     ++   +Y+Y G  L    +I G     G  ++ 
Sbjct: 130 WETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYY 189
Query: 122 IFQHGSS-HGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGS 180
           +   G+   G  FC +G+G   A G+L++ +K +LS ++ L L   +I A    D  SG 
Sbjct: 190 VDSDGTRLKGDIFC-VGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGG 248
Query: 181 KVDVTIIRKNGQV 193
            V++  + ++G +
Sbjct: 249 SVNLYHVTEDGWI 261

>pdb|3UNF|K Chain K, Mouse 20s Immunoproteasome In Complex With Pr-957 Length = 204

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 13/194 (6%)
Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSE-KIYCCG--AGSAADM 60
           TT     ++ GVI+  D+RAT    +GS I    +  ++N++ E   Y  G  +G AAD 
Sbjct: 1   TTTLAFKFQHGVIVAVDSRAT----AGSYI----SSLRMNKVIEINPYLLGTMSGCAADC 52
Query: 61  KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQL 119
           +    L+       + +    I V     ++   + +Y G  L    +I G D  G   L
Sbjct: 53  QYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPG-L 111
Query: 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSG 179
           + +  +G+    +  + G+G   A G++++G++++LS +E   L   AI      D  SG
Sbjct: 112 YYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSG 171
Query: 180 SKVDVTIIRKNGQV 193
             V++  ++++G V
Sbjct: 172 GVVNMYHMKEDGWV 185

>pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 248

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           G+T  G+   D V+LG + ++  K      +  +    KI  L + +    AG  AD + 
Sbjct: 29  GSTAVGVRGRDIVVLGVEKKSVAK------LQDERTVRKICALDDNVCMAFAGLTADARI 82
Query: 63  LSGLVEANLECQFPKAHTDIPVICP-----VTMIKQTLYKYHG---YLMCAFIIGGIDSA 114
           +  +  A +ECQ  +   + PV        +  +KQ   + +G   + + A I+G  D  
Sbjct: 83  V--INRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVG-FDFD 139
Query: 115 GGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILY 174
           G  +L+     G+ H  K  A+G G +     LE  + +   E + LT+ +  IKA +  
Sbjct: 140 GTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKL-VIKALLEV 198
Query: 175 DLGSGSKVDVTIIRKNGQVSSYKPYKV 201
               G  +++ ++R++  +    P ++
Sbjct: 199 VQSGGKNIELAVMRRDQSLKILNPEEI 225

>pdb|4B4T|5 Chain 5, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 287

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 8/193 (4%)
Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           GTT     ++ G+I+  D+RAT  +   S  +      ++  ++  +    AG AAD + 
Sbjct: 75  GTTTLAFRFQGGIIVAVDSRATAGNWVASQTV-----KRVIEINPFLLGTMAGGAADCQF 129
Query: 63  LSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFS 121
               + +       +    I V     ++   +Y+Y G  L    +I G     G  ++ 
Sbjct: 130 WETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYY 189
Query: 122 IFQHGSS-HGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGS 180
           +   G+   G  FC +G+G   A G+L++ +K +LS ++ L L   +I A    D  SG 
Sbjct: 190 VDSDGTRLKGDIFC-VGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGG 248
Query: 181 KVDVTIIRKNGQV 193
            V++  + ++G +
Sbjct: 249 SVNLYHVTEDGWI 261

>pdb|3UNB|C Chain C, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 248

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 94/209 (44%), Gaps = 24/209 (11%)
Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           G+T  G+  +D V+LG   ++  K      +  +    KI  L + +    AG  AD + 
Sbjct: 29  GSTAVGVRGKDIVVLGVAKKSVAK------LQDERTVRKICALDDNVCMAFAGLTADARI 82
Query: 63  LSGLVEANLECQFPKAHTDIPVICP-----VTMIKQTLYKYHG---YLMCAFIIGGIDSA 114
           +  +  A +ECQ  +   + PV        +  +KQ   + +G   + + A I+G  D  
Sbjct: 83  V--INRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVG-FDFD 139
Query: 115 GGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILY 174
           G  +L+     G+ H  K  A+G G +     LE  + ++  E + LT+ +  IKA +  
Sbjct: 140 GTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKL-VIKALLEV 198
Query: 175 DLGSGSKVDVTIIRKNGQVSSYKPYKVLS 203
               G  +++ ++R++      +P K+L+
Sbjct: 199 VQSGGKNIELAVMRRD------QPLKILN 221

>pdb|1IRU|L Chain L, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 204

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 7/191 (3%)
Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TT     +  GVI+ AD+RAT       + +      K+  ++  +    AG AAD    
Sbjct: 1   TTTLAFKFRHGVIVAADSRAT-----AGAYIASQTVKKVIEINPYLLGTMAGGAADCSFW 55
Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSI 122
             L+         +    I V     ++   +Y+Y G  L    +I G D  G   L+ +
Sbjct: 56  ERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPG-LYYV 114
Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKV 182
              G+       ++G+G   A G+++ G+  +L  ++   L   AI      D  SG  V
Sbjct: 115 DSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAV 174
Query: 183 DVTIIRKNGQV 193
           ++  +R++G +
Sbjct: 175 NLYHVREDGWI 185

>pdb|1J2P|A Chain A, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus Length = 246

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 17/168 (10%)
Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           G T  G+  ++GVIL AD R       GS +L      KI ++ E I    +G  AD + 
Sbjct: 34  GATAIGIKCKEGVILIADKRV------GSKLLEKDTIEKIYKIDEHICAATSGLVADARV 87
Query: 63  LSGLVEANLECQFPKAHTDIPVIC-----PVTMIKQTLYKYHGY--LMCAFIIGGIDSAG 115
           L  +  A +E Q  +   DIP+        +   KQ   +Y G      + +I G++   
Sbjct: 88  L--IDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEV- 144
Query: 116 GNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTL 163
             +L+     G+   +K  A+G G        E  ++++LS  + + L
Sbjct: 145 -PKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVL 191

>pdb|3UNB|K Chain K, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 205

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 7/191 (3%)
Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TT     +  GVI+ AD+RAT       + +      K+  ++  +    AG AAD    
Sbjct: 1   TTTLAFKFLHGVIVAADSRAT-----AGAYIASQTVKKVIEINPYLLGTMAGGAADCSFW 55
Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSI 122
             L+         +    I V     ++   +Y+Y G  L    +I G D  G   L+ +
Sbjct: 56  ERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPG-LYYV 114
Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKV 182
              G+       ++G+G   A G+++ G+  +L  +E   L   AI      D  SG  V
Sbjct: 115 DSEGNRISGTAFSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGAV 174
Query: 183 DVTIIRKNGQV 193
           ++  +R++G +
Sbjct: 175 NLYHVREDGWI 185

>pdb|1J2Q|A Chain A, 20s Proteasome In Complex With Calpain-inhibitor I From Archaeoglobus Fulgidus Length = 237

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 17/168 (10%)
Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           G T  G+  ++GVIL AD R       GS +L      KI ++ E I    +G  AD + 
Sbjct: 25  GATAIGIKCKEGVILIADKRV------GSKLLEADTIEKIYKIDEHICAATSGLVADARV 78
Query: 63  LSGLVEANLECQFPKAHTDIPVIC-----PVTMIKQTLYKYHGY--LMCAFIIGGIDSAG 115
           L  +  A +E Q  +   D P+        +   KQ   +Y G      + +I G+D   
Sbjct: 79  L--IDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEV- 135
Query: 116 GNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTL 163
             +L+     G+   +K  A+G G        E  ++++LS  + + L
Sbjct: 136 -PKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVL 182

>pdb|1G0U|K Chain K, A Gated Channel Into The Proteasome Core Particle Length = 212

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TT     ++ G+I+  D+RAT  +   S  +      K+  ++  +    AG AAD +  
Sbjct: 1   TTTLAFRFQGGIIVAVDSRATAGNWVASQTV-----KKVIEINPFLLGTMAGGAADCQFW 55
Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSI 122
              + +       +    I V     ++   +Y+Y G  L    +I G     G  ++ +
Sbjct: 56  ETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYV 115
Query: 123 FQHGSS-HGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
              G+   G  FC +G+G   A G+L++ +K +LS ++ L L   +I A    D  SG  
Sbjct: 116 DSDGTRLKGDIFC-VGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGS 174
Query: 182 VDVTIIRKNGQV 193
           V++  + ++G +
Sbjct: 175 VNLYHVTEDGWI 186

>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 261

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 16/197 (8%)
Query: 5   TICGLLYEDGVILGADTRATMKDASGSSILIDH--NCSKINRLSEKIYCCGAGSAADMKR 62
           T  G+L  DGV+L A+ R   K       L+D      KI +L+E + C  AG  +D   
Sbjct: 33  TCLGILANDGVLLAAERRNIHK-------LLDEVFFSEKIYKLNEDMACSVAGITSDANV 85
Query: 63  LSGLVEANLECQFPKAHTDIP---VICPVTMIKQTLYKYHGY--LMCAFIIGGIDSAGGN 117
           L+  +    +    +    IP   ++  +  IKQ   ++ G      + +  G D   G 
Sbjct: 86  LTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF 145
Query: 118 QLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE-NLSEKEGLTLMVDAIKAGILYDL 176
           QL+     G+  G K   +G     A+ +L+  +KE  ++ K  L L +  +   +    
Sbjct: 146 QLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSK 205
Query: 177 GSGSKVDV-TIIRKNGQ 192
            S  KV++ T+ R+NG+
Sbjct: 206 LSAEKVEIATLTRENGK 222

>pdb|1RYP|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 212

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TT     ++ G+I+  D+RAT  +   S  +      ++  ++  +    AG AAD +  
Sbjct: 1   TTTLAFRFQGGIIVAVDSRATAGNWVASQTV-----KRVIEINPFLLGTMAGGAADCQFW 55
Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSI 122
              + +       +    I V     ++   +Y+Y G  L    +I G     G  ++ +
Sbjct: 56  ETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYV 115
Query: 123 FQHGSS-HGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
              G+   G  FC +G+G   A G+L++ +K +LS ++ L L   +I A    D  SG  
Sbjct: 116 DSDGTRLKGDIFC-VGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGS 174
Query: 182 VDVTIIRKNGQV 193
           V++  + ++G +
Sbjct: 175 VNLYHVTEDGWI 186

>pdb|3UNB|B Chain B, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 261

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 16/197 (8%)
Query: 5   TICGLLYEDGVILGADTRATMKDASGSSILIDH--NCSKINRLSEKIYCCGAGSAADMKR 62
           T  G+L  DGV+L A+ R   K       L+D      KI +L+E + C  AG  +D   
Sbjct: 33  TCLGILANDGVLLAAERRNIHK-------LLDEVFFSEKIYKLNEDMACSVAGITSDANV 85
Query: 63  LSGLVEANLECQFPKAHTDIP---VICPVTMIKQTLYKYHGY--LMCAFIIGGIDSAGGN 117
           L+  +    +    +    IP   ++  +  IKQ   ++ G      + +  G D   G 
Sbjct: 86  LTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF 145
Query: 118 QLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE-NLSEKEGLTLMVDAIKAGILYDL 176
           QL+     G+  G K   +G     A+ +L+  +KE  ++ K  L L V  +   +    
Sbjct: 146 QLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAVKVLNKTMDVSK 205
Query: 177 GSGSKVDV-TIIRKNGQ 192
            S  KV++ T+ R++G+
Sbjct: 206 LSAEKVEIATLTRESGK 222

>pdb|1G0U|D Chain D, A Gated Channel Into The Proteasome Core Particle Length = 241

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           G+T  G+  ++GV+LG + RAT      S +L   +  KI  +   I C  +G  AD + 
Sbjct: 34  GSTAIGIATKEGVVLGVEKRAT------SPLLESDSIEKIVEIDRHIGCAMSGLTADARS 87
Query: 63  L-----SGLVEANLECQFPKAHTDIPV------ICPVTMIKQTLYKYHGYLMCAFIIGGI 111
           +     +  V  NL         DI V      +C +      + +  G    A +I G 
Sbjct: 88  MIEHARTAAVTHNLYYD-----EDINVESLTQSVCDLAA-AAAMSRPFG---VALLIAGH 138
Query: 112 DSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIK 169
           D+  G QLF     G+ + +   A+G+G + A   L   W  +L+ KE   L++  +K
Sbjct: 139 DADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILK 196

>pdb|4G4S|E Chain E, Structure Of Proteasome-Pba1-Pba2 Complex Length = 261

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 27/183 (14%)
Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           G+T  G+  ++GV+LG + RAT      S +L   +  KI  +   I C  +G  AD + 
Sbjct: 35  GSTAIGIATKEGVVLGVEKRAT------SPLLESDSIEKIVEIDRHIGCAMSGLTADARS 88
Query: 63  L-----SGLVEANLECQFPKAHTDIPV------ICPVTMIKQTLYKYHGYLM-----CAF 106
           +     +  V  NL         DI V      +C + +           LM      A 
Sbjct: 89  MIEHARTAAVTHNLYYD-----EDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVAL 143
Query: 107 IIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVD 166
           +I G D+  G QLF     G+ + +   A+G+G + A   L   W  +L+ KE   L++ 
Sbjct: 144 LIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLK 203
Query: 167 AIK 169
            +K
Sbjct: 204 ILK 206

>pdb|1FNT|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 260

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 27/183 (14%)
Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           G+T  G+  ++GV+LG + RAT      S +L   +  KI  +   I C  +G  AD + 
Sbjct: 34  GSTAIGIATKEGVVLGVEKRAT------SPLLESDSIEKIVEIDRHIGCAMSGLTADARS 87
Query: 63  L-----SGLVEANLECQFPKAHTDIPV------ICPVTMIKQTLYKYHGYLM-----CAF 106
           +     +  V  NL         DI V      +C + +           LM      A 
Sbjct: 88  MIEHARTAAVTHNLYYD-----EDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVAL 142
Query: 107 IIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVD 166
           +I G D+  G QLF     G+ + +   A+G+G + A   L   W  +L+ KE   L++ 
Sbjct: 143 LIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLK 202
Query: 167 AIK 169
            +K
Sbjct: 203 ILK 205

>pdb|2Z5C|C Chain C, Crystal Structure Of A Novel Chaperone Complex For Yeast 20s Proteasome Assembly Length = 262

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 27/183 (14%)
Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           G+T  G+  ++GV+LG + RAT      S +L   +  KI  +   I C  +G  AD + 
Sbjct: 36  GSTAIGIATKEGVVLGVEKRAT------SPLLESDSIEKIVEIDRHIGCAMSGLTADARS 89
Query: 63  L-----SGLVEANLECQFPKAHTDIPV------ICPVTMIKQTLYKYHGYLM-----CAF 106
           +     +  V  NL         DI V      +C + +           LM      A 
Sbjct: 90  MIEHARTAAVTHNLYYD-----EDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVAL 144
Query: 107 IIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVD 166
           +I G D+  G QLF     G+ + +   A+G+G + A   L   W  +L+ KE   L++ 
Sbjct: 145 LIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLK 204
Query: 167 AIK 169
            +K
Sbjct: 205 ILK 207

>pdb|1RYP|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 242

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 27/183 (14%)
Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           G+T  G+  ++GV+LG + RAT      S +L   +  KI  +   I C  +G  AD + 
Sbjct: 26  GSTAIGIATKEGVVLGVEKRAT------SPLLESDSIEKIVEIDRHIGCAMSGLTADARS 79
Query: 63  L-----SGLVEANLECQFPKAHTDIPV------ICPVTMIKQTLYKYHGYLM-----CAF 106
           +     +  V  NL         DI V      +C + +           LM      A 
Sbjct: 80  MIEHARTAAVTHNLYYD-----EDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVAL 134
Query: 107 IIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVD 166
           +I G D+  G QLF     G+ + +   A+G+G + A   L   W  +L+ KE   L++ 
Sbjct: 135 LIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLK 194
Query: 167 AIK 169
            +K
Sbjct: 195 ILK 197

>pdb|1VSY|E Chain E, Proteasome Activator Complex Length = 250

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 27/183 (14%)
Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           G+T  G+  ++GV+LG + RAT      S +L   +  KI  +   I C  +G  AD + 
Sbjct: 34  GSTAIGIATKEGVVLGVEKRAT------SPLLESDSIEKIVEIDRHIGCAMSGLTADARS 87
Query: 63  L-----SGLVEANLECQFPKAHTDIPV------ICPVTMIKQTLYKYHGYLM-----CAF 106
           +     +  V  NL         DI V      +C + +           LM      A 
Sbjct: 88  MIEHARTAAVTHNLYYD-----EDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVAL 142
Query: 107 IIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVD 166
           +I G D+  G QLF     G+ + +   A+G+G + A   L   W  +L+ KE   L++ 
Sbjct: 143 LIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLK 202
Query: 167 AIK 169
            +K
Sbjct: 203 ILK 205

>pdb|1IRU|M Chain M, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 213

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 17/202 (8%)
Query: 1   MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
             G TI  +  ED  I+ +DTR +     G SI    +  K  +L++K     +G   D 
Sbjct: 7   FNGGTILAIAGEDFAIVASDTRLS----EGFSIHT-RDSPKCYKLTDKTVIGCSGFHGDC 61
Query: 61  KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAF-IIGGIDSAGGNQL 119
             L+ ++EA L+      +  +       M+   LY    +    + IIGG+D  G   +
Sbjct: 62  LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAV 121
Query: 120 FSIFQHGSSHGHKFCAMGTG---LQPAMGILEAGWKE-------NLSEKEGLTLMVDAIK 169
           +S    GS     F A G+    LQP +   + G+K         LS    + L+ D   
Sbjct: 122 YSFDPVGSYQRDSFKAGGSASAMLQPLLDN-QVGFKNMQNVEHVPLSLDRAMRLVKDVFI 180
Query: 170 AGILYDLGSGSKVDVTIIRKNG 191
           +    D+ +G  + + I+ K G
Sbjct: 181 SAAERDVYTGDALRICIVTKEG 202

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	260
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	2e-69
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	1e-68
1iru_I	234	20S proteasome; cell cycle, immune response, prote	2e-68
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	7e-68
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	1e-61
1iru_H	205	20S proteasome; cell cycle, immune response, prote	2e-59
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	4e-57
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	2e-56
1iru_L	204	20S proteasome; cell cycle, immune response, prote	2e-56
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	1e-55
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	5e-55
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	1e-54
1iru_N	219	20S proteasome; cell cycle, immune response, prote	1e-54
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	3e-54
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	3e-54
1iru_J	205	20S proteasome; cell cycle, immune response, prote	4e-54
1iru_M	213	20S proteasome; cell cycle, immune response, prote	8e-54
1iru_K	201	20S proteasome; cell cycle, immune response, prote	1e-53
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	2e-53
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	1e-51
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	9e-51
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	1e-48
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	2e-45
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	3e-44
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	3e-44
1q5q_A	259	Proteasome alpha-type subunit 1; proteasome assemb	4e-28
3mi0_A	248	Proteasome subunit alpha; enzyme inhibitors, lacto	4e-27
1ryp_C	244	20S proteasome; multicatalytic proteinase, protein	8e-20
1ryp_B	250	20S proteasome; multicatalytic proteinase, protein	2e-19
1ryp_E	242	20S proteasome; multicatalytic proteinase, protein	1e-18
1j2p_A	246	Alpha-ring, proteasome alpha subunit; hydrolase; 2	3e-18
1iru_E	241	20S proteasome; cell cycle, immune response, prote	5e-18
1iru_G	254	20S proteasome; cell cycle, immune response, prote	5e-18
1iru_D	248	20S proteasome; cell cycle, immune response, prote	8e-18
1yar_A	233	Proteasome alpha subunit; proteasome 20S, PA26 pro	9e-18
1iru_B	233	20S proteasome; cell cycle, immune response, prote	1e-17
1iru_B	233	20S proteasome; cell cycle, immune response, prote	2e-17
1iru_C	261	20S proteasome; cell cycle, immune response, prote	2e-17
1ryp_D	241	20S proteasome; multicatalytic proteinase, protein	2e-16
1iru_A	246	20S proteasome; cell cycle, immune response, prote	3e-16
1ryp_A	243	20S proteasome; multicatalytic proteinase, protein	3e-16
1ryp_F	233	20S proteasome; multicatalytic proteinase, protein	6e-16
1iru_F	263	20S proteasome; cell cycle, immune response, prote	2e-15
2z3b_A	180	ATP-dependent protease HSLV; N-terminal nucleophIl	3e-15
1ryp_G	244	20S proteasome; multicatalytic proteinase, protein	2e-14
3nzj_F	288	Proteasome component C1; ubiquitin, protein degrad	2e-14
1g3k_A	174	ATP-dependent protease HSLV; hydrolase; 1.90A {Hae	6e-13
1m4y_A	171	ATP-dependent protease HSLV; N-terminal catalytic	9e-11

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* Length = 261

 Score =  214 bits (546), Expect = 2e-69
 Identities = 88/234 (37%), Positives = 136/234 (58%), Gaps = 6/234 (2%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTTI G+ + +GV++ ADTR+T        I+ D NC+K++R+S KI+C GAG+AAD +
Sbjct: 28  TGTTIVGVKFNNGVVIAADTRSTQ-----GPIVADKNCAKLHRISPKIWCAGAGTAADTE 82

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
            ++ L+ +N+E        +  V+  + M+KQ L+KY G++    I+ G+D  G   LFS
Sbjct: 83  AVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGS-HLFS 141

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           I  HGS+    + ++G+G   AM +LE+ WK++L+++E + L  DAI+AGI  DLGSGS 
Sbjct: 142 IHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSN 201

Query: 182 VDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKPSE 235
           VDV ++         + Y   + R  K      P GTT VL   ++ I     E
Sbjct: 202 VDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTAVLKESIVNICDIQEE 255

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Length = 234

 Score =  210 bits (538), Expect = 1e-68
 Identities = 82/232 (35%), Positives = 131/232 (56%), Gaps = 7/232 (3%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI GL++ DGVILGADTRAT       S++ D +C KI+ ++ KIYCCGAG AAD +  
Sbjct: 1   TTIAGLVFRDGVILGADTRATND-----SVVADKSCEKIHFIAPKIYCCGAGVAADTEMT 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
           + +  + +E        +  V     +++QTL++Y G++  + ++GG+D  G  QL+ + 
Sbjct: 56  TRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVDLNGP-QLYEVH 114

Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
            HGS     F A+G+G   A+ +LE  ++ N++ +    L+V+AI AGIL DLGSG  VD
Sbjct: 115 PHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVD 174

Query: 184 VTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKPSE 235
             +I   G     +     ++ + +  +     GTT VL+ +V P+  +  E
Sbjct: 175 ACVITAGG-AKLQRALSTPTEPVQRAGRYRFAPGTTPVLTREVRPLTLELLE 225

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Length = 234

 Score =  210 bits (536), Expect = 2e-68
 Identities = 89/227 (39%), Positives = 136/227 (59%), Gaps = 7/227 (3%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI G++Y+DG++LGADTRAT        ++ D NCSKI+ +S  IYCCGAG+AAD    
Sbjct: 1   TTIAGVVYKDGIVLGADTRATE-----GMVVADKNCSKIHFISPNIYCCGAGTAADTDMT 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
           + L+ +NLE           V+    M+KQ L++Y GY+  A ++GG+D  G   L+SI+
Sbjct: 56  TQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVDVTGP-HLYSIY 114

Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
            HGS+    +  MG+G   AM + E  ++ ++ E+E   L+ +AI AGI  DLGSGS +D
Sbjct: 115 PHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNID 174

Query: 184 VTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
           + +I KN  +   +PY V + +  +  +     GTT VL+ ++ P+E
Sbjct: 175 LCVISKNK-LDFLRPYTVPNKKGTRLGRYRCEKGTTAVLTEKITPLE 220

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Length = 222

 Score =  208 bits (531), Expect = 7e-68
 Identities = 85/226 (37%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI G+ + +GV++ ADTR+T        I+ D NC+K++R+S KI+C GAG+AAD + +
Sbjct: 1   TTIVGVKFNNGVVIAADTRSTQ-----GPIVADKNCAKLHRISPKIWCAGAGTAADTEAV 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
           + L+ +N+E        +  V+  + M+KQ L+KY G++    I+ G+D  G   LFSI 
Sbjct: 56  TQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGS-HLFSIH 114

Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
            HGS+    + ++G+G   AM +LE+ WK++L+++E + L  DAI+AGI  DLGSGS VD
Sbjct: 115 AHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVD 174

Query: 184 VTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPI 229
           V ++         + Y   + R  K      P GTT VL   ++ I
Sbjct: 175 VCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTAVLKESIVNI 220

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Length = 205

 Score =  192 bits (489), Expect = 1e-61
 Identities = 50/191 (26%), Positives = 96/191 (50%), Gaps = 6/191 (3%)

Query: 1   MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
             G +I  + ++DGVILGAD+R T     G+ I  +    K+ R+ +KI+CC +GSAAD 
Sbjct: 7   SLGASIMAVTFKDGVILGADSRTTT----GAYIA-NRVTDKLTRVHDKIWCCRSGSAADT 61

Query: 61  KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLF 120
           + ++ +V+ +LE  +   +         ++ K+  Y+    L    I+ G D     +++
Sbjct: 62  QAIADIVQYHLE-LYTSQYGTPSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVY 120

Query: 121 SIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGS 180
           +I   GS H   +   G+G     G  +  ++EN+S++E +  +  ++   I +D  SG 
Sbjct: 121 TIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGG 180

Query: 181 KVDVTIIRKNG 191
            + + ++   G
Sbjct: 181 VIRMVVLTAAG 191

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Length = 205

 Score =  186 bits (474), Expect = 2e-59
 Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 5/188 (2%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI  + ++ GV+LGAD+R T     GS I  +    K+  + ++I+CC +GSAAD + +
Sbjct: 1   TTIMAVQFDGGVVLGADSRTTT----GSYIA-NRVTDKLTPIHDRIFCCRSGSAADTQAV 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
           +  V   L     + +    V    ++ K+  Y+Y   LM   II G D   G Q++S+ 
Sbjct: 56  ADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVP 115

Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
             G      F   G+G     G ++A ++E ++++E L    +A+   +  D  SG  + 
Sbjct: 116 MGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIR 175

Query: 184 VTIIRKNG 191
           +  I ++G
Sbjct: 176 LAAIAESG 183

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Length = 199

 Score =  180 bits (459), Expect = 4e-57
 Identities = 45/199 (22%), Positives = 87/199 (43%), Gaps = 7/199 (3%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI  + ++ GV++G+D+R +     G+++ ++    K++ L ++I+C  +GSAAD + +
Sbjct: 1   TTIMAVEFDGGVVVGSDSRVSA----GTAV-VNRVFDKLSPLHQRIFCALSGSAADAQAI 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
           + +    LE    +      V+    ++K   YKY   L+   I+ G D   G       
Sbjct: 56  ADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREG-GQVYGT 114

Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
             G      F   G+G     G ++A +K  ++ +E      +AI   +  D  SG  + 
Sbjct: 115 MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIY 174

Query: 184 VTIIRKNG-QVSSYKPYKV 201
           +  I   G         ++
Sbjct: 175 LVTITAAGVDHRVILGDEL 193

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* Length = 287

 Score =  181 bits (462), Expect = 2e-56
 Identities = 43/192 (22%), Positives = 82/192 (42%), Gaps = 6/192 (3%)

Query: 1   MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
             GTT     ++ G+I+  D+RAT     G+ +       K+  ++  +    AG AAD 
Sbjct: 73  AHGTTTLAFRFQGGIIVAVDSRATA----GNWVA-SQTVKKVIEINPFLLGTMAGGAADC 127

Query: 61  KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQL 119
           +     + +       +    I V     ++   +Y+Y G  L    +I G     G  +
Sbjct: 128 QFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTI 187

Query: 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSG 179
           + +   G+        +G+G   A G+L++ +K +LS ++ L L   +I A    D  SG
Sbjct: 188 YYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSG 247

Query: 180 SKVDVTIIRKNG 191
             V++  + ++G
Sbjct: 248 GSVNLYHVTEDG 259

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Length = 204

 Score =  178 bits (454), Expect = 2e-56
 Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 7/189 (3%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TT     +  GVI+ AD+RAT     G+ I       K+  ++  +    AG AAD    
Sbjct: 1   TTTLAFKFRHGVIVAADSRATA----GAYIA-SQTVKKVIEINPYLLGTMAGGAADCSFW 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSI 122
             L+         +    I V     ++   +Y+Y G  L    +I G D  G   L+ +
Sbjct: 56  ERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGP-GLYYV 114

Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKV 182
              G+       ++G+G   A G+++ G+  +L  ++   L   AI      D  SG  V
Sbjct: 115 DSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAV 174

Query: 183 DVTIIRKNG 191
           ++  +R++G
Sbjct: 175 NLYHVREDG 183

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Length = 212

 Score =  176 bits (449), Expect = 1e-55
 Identities = 41/189 (21%), Positives = 81/189 (42%), Gaps = 6/189 (3%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TT     ++ G+I+  D+RAT     G+ +       ++  ++  +    AG AAD +  
Sbjct: 1   TTTLAFRFQGGIIVAVDSRATA----GNWVA-SQTVKRVIEINPFLLGTMAGGAADCQFW 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSI 122
              + +       +    I V     ++   +Y+Y G  L    +I G     G  ++ +
Sbjct: 56  ETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYV 115

Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKV 182
              G+        +G+G   A G+L++ +K +LS ++ L L   +I A    D  SG  V
Sbjct: 116 DSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSV 175

Query: 183 DVTIIRKNG 191
           ++  + ++G
Sbjct: 176 NLYHVTEDG 184

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 264

 Score =  175 bits (446), Expect = 5e-55
 Identities = 9/190 (4%), Positives = 29/190 (15%), Gaps = 7/190 (3%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           + +  +                         +++    + R +  I              
Sbjct: 2   SHMQMVPPSAYDRAITVFSPEG----RLYQ-VEYAREAVRRGTTAIGIACKDGVVLAVDR 56

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSI 122
               +        K       +   T       +           I  +       +  +
Sbjct: 57  RITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEML 116

Query: 123 FQHGSS-HGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
            +             G        ++    K      E                 G    
Sbjct: 117 AKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVV 176

Query: 182 VDVTIIRKNG 191
           +++       
Sbjct: 177 MELLEKEYRD 186

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217

 Score =  174 bits (444), Expect = 1e-54
 Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 8/191 (4%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           TGTT  G+  +D VI+  + R TM      + ++  N  K+ ++        AG   D +
Sbjct: 7   TGTTTVGITLKDAVIMATERRVTM-----ENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQ 61

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLF 120
            L   ++A LE    +   ++P+    T++   L +      M   ++GGID+A    +F
Sbjct: 62  VLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAP--HVF 119

Query: 121 SIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGS 180
           SI   G S    + + G+G     G+LE+ + E ++  EG+ L++ AI A    D  SG 
Sbjct: 120 SIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGG 179

Query: 181 KVDVTIIRKNG 191
            +DV +I +  
Sbjct: 180 MIDVAVITRKD 190

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219

 Score =  174 bits (443), Expect = 1e-54
 Identities = 39/207 (18%), Positives = 75/207 (36%), Gaps = 13/207 (6%)

Query: 1   MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
           +TGT++ G+ +E GV++ AD   +       S+    N S+I R++       +G  AD 
Sbjct: 6   VTGTSVLGVKFEGGVVIAADMLGSY-----GSLARFRNISRIMRVNNSTMLGASGDYADF 60

Query: 61  KRLSGLVEANLECQFPKAH-TDIPVICPVTMIKQTLYKYHGY---LMCAFIIGGIDSAGG 116
           + L  ++   +  +               + + + +Y        L    +IGG      
Sbjct: 61  QYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGES 120

Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAG--WKENLSEKEGLTLMVDAIKAGILY 174
             L  +   G ++     A G G   A  +L      +  LS+ E   L+   ++     
Sbjct: 121 -FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYR 179

Query: 175 DLGSGSKVDVTIIRKNGQVSSYKPYKV 201
           D  S ++     + + G V    P   
Sbjct: 180 DARSYNRFQTATVTEKG-VEIEGPLST 205

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Length = 202

 Score =  173 bits (440), Expect = 3e-54
 Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 8/190 (4%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TT  GL+ +DGV++  + RATM    G+ I       KI ++++++    AGS  D + L
Sbjct: 1   TTTVGLVCKDGVVMATEKRATM----GNFI-ASKAAKKIYQIADRMAMTTAGSVGDAQFL 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSI 122
           + +++        +      V    T+    L  Y  +  +   +IGGIDS G   ++SI
Sbjct: 56  ARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGK-SIYSI 114

Query: 123 -FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
               G+       A G+G   A G+LE  +   +   E + L V AI + +  D  SG  
Sbjct: 115 DPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDG 174

Query: 182 VDVTIIRKNG 191
           +DV  I ++ 
Sbjct: 175 IDVVKITEDE 184

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233

 Score =  174 bits (442), Expect = 3e-54
 Identities = 40/214 (18%), Positives = 81/214 (37%), Gaps = 18/214 (8%)

Query: 1   MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
           +TGT++  + Y++GVI+ AD   +       S+L  +   ++  + +      +G  +DM
Sbjct: 6   VTGTSVISMKYDNGVIIAADNLGSY-----GSLLRFNGVERLIPVGDNTVVGISGDISDM 60

Query: 61  KRLSGLVEAN-----LECQFPKAHTDIPVICPVTMIKQTLYKYHGY---LMCAFIIGGID 112
           + +  L++        +     A   +        +   +Y+       L  A I+ G+ 
Sbjct: 61  QHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQ 120

Query: 113 SAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE-----NLSEKEGLTLMVDA 167
           S G   L  +   G ++     A G G   A  +L             + +     +V+A
Sbjct: 121 SNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNA 180

Query: 168 IKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKV 201
           ++     D  S     + II KN  ++  K  +V
Sbjct: 181 MRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQV 214

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Length = 205

 Score =  172 bits (439), Expect = 4e-54
 Identities = 40/194 (20%), Positives = 77/194 (39%), Gaps = 8/194 (4%)

Query: 1   MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
             G  +  +  ++ V + AD R  +     + + +  +  KI  + +++Y   AG A D+
Sbjct: 6   YNGGAVMAMKGKNCVAIAADRRFGI----QAQL-VTTDFQKIFPMGDRLYIGLAGLATDV 60

Query: 61  KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQ- 118
           + ++  ++  L     K    I     ++M+   LY+   G      +I G+D       
Sbjct: 61  QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120

Query: 119 LFSIFQHGSS-HGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLG 177
           + S+   G       F   GT  +   G+ E+ W+ N+        +  A+   +  D  
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAV 180

Query: 178 SGSKVDVTIIRKNG 191
           SG  V V II K+ 
Sbjct: 181 SGMGVIVHIIEKDK 194

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213

 Score =  172 bits (437), Expect = 8e-54
 Identities = 46/201 (22%), Positives = 77/201 (38%), Gaps = 15/201 (7%)

Query: 1   MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
             G TI  +  ED  I+ +DTR +     G SI    +  K  +L++K     +G   D 
Sbjct: 7   FNGGTILAIAGEDFAIVASDTRLSE----GFSIH-TRDSPKCYKLTDKTVIGCSGFHGDC 61

Query: 61  KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQL 119
             L+ ++EA L+      +  +       M+   LY    +      IIGG+D  G   +
Sbjct: 62  LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAV 121

Query: 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILEAG---------WKENLSEKEGLTLMVDAIKA 170
           +S    GS     F A G+       +L+               LS    + L+ D   +
Sbjct: 122 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFIS 181

Query: 171 GILYDLGSGSKVDVTIIRKNG 191
               D+ +G  + + I+ K G
Sbjct: 182 AAERDVYTGDALRICIVTKEG 202

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201

 Score =  171 bits (435), Expect = 1e-53
 Identities = 33/191 (17%), Positives = 73/191 (38%), Gaps = 8/191 (4%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
             + G+   D V++ +D  A       + + +  +  K+ ++SEKI     G A D  + 
Sbjct: 2   EYLIGIQGPDYVLVASDRVAAS-----NIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQF 56

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLY---KYHGYLMCAFIIGGIDSAGGNQLF 120
           +  ++ N++    +   ++         ++ L    +         ++ G D   G  L+
Sbjct: 57  AEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALY 116

Query: 121 SIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGS 180
            +    +     F A G G    + IL+  +   +S +  + L+   ++      + +  
Sbjct: 117 YMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLP 176

Query: 181 KVDVTIIRKNG 191
              V II KNG
Sbjct: 177 TFSVRIIDKNG 187

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198

 Score =  170 bits (434), Expect = 2e-53
 Identities = 38/202 (18%), Positives = 78/202 (38%), Gaps = 10/202 (4%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
             I G+  +D VIL +    T         ++  +  K  +LS       AG A D  + 
Sbjct: 2   DIILGIRVQDSVILASSKAVTR-----GISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQF 56

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY---LMCAFIIGGIDS-AGGNQL 119
           +  ++AN++    +   ++      + ++Q L K            +IGG D      +L
Sbjct: 57  AEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPEL 116

Query: 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSG 179
           + I   G+     + A G        +L+  ++ +++ +EGL L+   ++          
Sbjct: 117 YQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDF 176

Query: 180 SKVDVTIIRKNGQVSSYKPYKV 201
             V V I+ K+G +     ++ 
Sbjct: 177 KGVIVKIVDKDG-IRQVDDFQA 197

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266

 Score =  168 bits (427), Expect = 1e-51
 Identities = 40/214 (18%), Positives = 81/214 (37%), Gaps = 18/214 (8%)

Query: 1   MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
           +TGT++  + Y++GVI+ AD   +     GS +   +   ++  + +      +G  +DM
Sbjct: 39  VTGTSVISMKYDNGVIIAADNLGSY----GSLLR-FNGVERLIPVGDNTVVGISGDISDM 93

Query: 61  KRLSGLVEAN-----LECQFPKAHTDIPVICPVTMIKQTLYKYHGY---LMCAFIIGGID 112
           + +  L++        +     A   +        +   +Y+       L  A I+ G+ 
Sbjct: 94  QHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQ 153

Query: 113 SAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWK-----ENLSEKEGLTLMVDA 167
           S G   L  +   G ++     A G G   A  +L             + +     +V+A
Sbjct: 154 SNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNA 213

Query: 168 IKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKV 201
           ++     D  S     + II KN  ++  K  +V
Sbjct: 214 MRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQV 247

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Length = 222

 Score =  164 bits (418), Expect = 9e-51
 Identities = 44/210 (20%), Positives = 73/210 (34%), Gaps = 24/210 (11%)

Query: 1   MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
             G TI G+  ED  +L  DTR         SI       K+    + I     G AAD 
Sbjct: 7   DNGGTILGIAGEDFAVLAGDTRNIT----DYSIN-SRYEPKVFDCGDNIVMSANGFAADG 61

Query: 61  KRLSGLVEANLEC-QFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQ 118
             L    + +++   F      + +      I+  LY    +      II G+D  G   
Sbjct: 62  DALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGA 121

Query: 119 LFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWK-----------------ENLSEKEGL 161
           ++S    GS    +  A G      M  L+                     + LS +E +
Sbjct: 122 VYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVI 181

Query: 162 TLMVDAIKAGILYDLGSGSKVDVTIIRKNG 191
            L+ D+  +     +  G  +++ I+ K+G
Sbjct: 182 KLVRDSFTSATERHIQVGDGLEILIVTKDG 211

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Length = 204

 Score =  158 bits (402), Expect = 1e-48
 Identities = 36/194 (18%), Positives = 66/194 (34%), Gaps = 9/194 (4%)

Query: 1   MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
           + G  +  +  +D V +  D R        S   + +   KI      ++    G A D+
Sbjct: 6   INGGIVVAMTGKDCVAIACDLRLGS----QSLG-VSNKFEKIFHYG-HVFLGITGLATDV 59

Query: 61  KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGN-Q 118
             L+ +          K    I       ++  +LY+          ++ GI+S  G   
Sbjct: 60  TTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPF 119

Query: 119 LFSIFQHGSSH-GHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLG 177
           +      G       F   GT      G+ E+ ++ NL  ++    +  A+      D  
Sbjct: 120 IAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDAL 179

Query: 178 SGSKVDVTIIRKNG 191
           SG    V II+K+ 
Sbjct: 180 SGWGAVVYIIKKDE 193

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Length = 291

 Score =  153 bits (387), Expect = 2e-45
 Identities = 40/215 (18%), Positives = 73/215 (33%), Gaps = 16/215 (7%)

Query: 1   MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
             GTTI  L Y  GV++  D R+T     G+ I    +  K+    +      AG+AA  
Sbjct: 55  PHGTTIVALKYPGGVVMAGDRRSTQ----GNMIS-GRDVRKVYITDDYTATGIAGTAAVA 109

Query: 61  KRLSGLVEANLECQFPKAHTDIPVICPV----TMIKQTLYKYHGYLMCAFIIGGID---- 112
              + L    LE         +     +     M++  L      L+   ++ G D    
Sbjct: 110 VEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHAS 169

Query: 113 -SAGGNQLFSIFQHG--SSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIK 169
                 ++ S    G  +     + A+G+G   A   ++  + +      GL + V+A+ 
Sbjct: 170 DPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALY 229

Query: 170 AGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
                D  +G    V  I     +        + +
Sbjct: 230 DAADDDSATGGPDLVRGIFPTAVIIDADGAVDVPE 264

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Length = 294

 Score =  150 bits (380), Expect = 3e-44
 Identities = 40/208 (19%), Positives = 68/208 (32%), Gaps = 23/208 (11%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
            GTTI  L Y+ GV+L  D RAT     G+ I    +   +    E      AG+A    
Sbjct: 64  HGTTIVALTYKGGVLLAGDRRATQ----GNLIA-SRDVEAVYVTDEYSAAGIAGTAGIAI 118

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY----LMCAFIIGGIDSAG-- 115
            L  L    LE         +        +   +    G     L    ++ G D     
Sbjct: 119 ELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADD 178

Query: 116 ---GNQLFSIFQHGSSHGHK--FCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKA 170
                ++ S    G  +  +  + A+G+G   A   L+  +  +  E+  L   ++++  
Sbjct: 179 ESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYD 238

Query: 171 GILYDLGSG-------SKVDVTIIRKNG 191
               D  +G              I + G
Sbjct: 239 AADDDSATGGPDLTRGIYPTAVTITQAG 266

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Length = 235

 Score =  148 bits (375), Expect = 3e-44
 Identities = 39/206 (18%), Positives = 69/206 (33%), Gaps = 23/206 (11%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI  L Y+ GV+L  D RAT     G+ I    +  K+    E      AG+A     L
Sbjct: 1   TTIVALTYKGGVLLAGDRRATQ----GNLIA-SRDVEKVYVTDEYSAAGIAGTAGIAIEL 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY---------LMCAFIIGGIDSA 114
             L    LE         +        +   +    G          L+  + +   D +
Sbjct: 56  VRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDES 115

Query: 115 GGNQLFSIFQHGSSHGHK--FCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGI 172
              ++ S    G  +  +  + A+G+G   A   L+  +  +  E+  L   ++++    
Sbjct: 116 RAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAA 175

Query: 173 LYDLGSG-------SKVDVTIIRKNG 191
             D  +G              I + G
Sbjct: 176 DDDSATGGPDLTRGIYPTAVTITQAG 201

>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A Length = 259

 Score =  107 bits (267), Expect = 4e-28
 Identities = 36/204 (17%), Positives = 78/204 (38%), Gaps = 28/204 (13%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
            G ++  L + DGV+  A+  +T                K++ L +++     G   + +
Sbjct: 26  RGRSVVVLTFRDGVLFVAENPSTA-------------LHKVSELYDRLGFAAVGKYNEFE 72

Query: 62  RLS--GLVEANLECQFPKAHTDIPVICPVTMIKQTL-------YKYHGYLMCAFIIGGID 112
            L   G+V A++   +     D+          QTL        K +   +C   +G + 
Sbjct: 73  NLRRAGIVHADMRG-YSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVG 131

Query: 113 SAGGNQLFSIFQHGS-SHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAG 171
           S    QL+ I   GS      F  MG   +P    +   ++ +L  +  + + V+A++ G
Sbjct: 132 SPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQG 191

Query: 172 ILYDLGSG----SKVDVTIIRKNG 191
              +        + ++V ++ ++ 
Sbjct: 192 GAGEGEKRNVDVASLEVAVLDQSR 215

>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D Length = 248

 Score =  104 bits (260), Expect = 4e-27
 Identities = 38/211 (18%), Positives = 74/211 (35%), Gaps = 30/211 (14%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK- 61
             ++  L Y  GV+  A+  +              +  KI+ L +++    AG   +   
Sbjct: 27  AKSVVALAYAGGVLFVAENPSR-------------SLQKISELYDRVGFAAAGKFNEFDN 73

Query: 62  -RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLM----CAFIIGGIDSAG- 115
            R  G+  A+    +     D+       +  QTL                +  +   G 
Sbjct: 74  LRRGGIQFADTRG-YAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGE 132

Query: 116 --GNQLFSIFQHGS-SHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGI 172
               +L+ I   GS +    F  MG   +P    L+  + EN S  + L + V A++AG 
Sbjct: 133 TKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGS 192

Query: 173 LYDLGSG------SKVDVTIIRKNGQVSSYK 197
               G        + ++V ++  N    +++
Sbjct: 193 ADTSGGDQPTLGVASLEVAVLDANRPRRAFR 223

>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ... Length = 244

 Score = 84.7 bits (210), Expect = 8e-20
 Identities = 50/214 (23%), Positives = 91/214 (42%), Gaps = 25/214 (11%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCS--KINRLSEKIYCCGAGSAADM 60
             T  G++  DG++L A+ + T       S L++ + S  K+ +L++KI    AG  AD 
Sbjct: 31  AGTAIGIMASDGIVLAAERKVT-------STLLEQDTSTEKLYKLNDKIAVAVAGLTADA 83

Query: 61  KRLSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGG 110
           + L     A +  Q      + DIPV   +  ++ IKQ  T +      G    +FI  G
Sbjct: 84  EILIN--TARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFG---VSFIYAG 138

Query: 111 IDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKA 170
            D   G QL++    G+  G K  ++G     A  +L+  +K+++   + + L +  +  
Sbjct: 139 YDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSK 198

Query: 171 GILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
                  +  +++   IRK G        K+   
Sbjct: 199 TTDSSALTYDRLEFATIRK-GANDGEVYQKIFKP 231

>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ... Length = 250

 Score = 83.4 bits (207), Expect = 2e-19
 Identities = 39/201 (19%), Positives = 72/201 (35%), Gaps = 25/201 (12%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
           G T  G+   +GV++  + +++       S L      SK++ L+  I    +G   D +
Sbjct: 31  GVTSLGIKATNGVVIATEKKSS-------SPLAMSETLSKVSLLTPDIGAVYSGMGPDYR 83

Query: 62  RLSGLVEANLECQFPKAHT---DIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGG 110
            L    ++                P    +  V  I Q  T        G    + +I G
Sbjct: 84  VLVD--KSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFG---VSLLIAG 138

Query: 111 IDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKA 170
            D   G  L+ +   GS    K  A+G G   A   LE  W + L  ++ + + +  +K 
Sbjct: 139 HDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKE 198

Query: 171 GILYDLGSGSKVDVTIIRKNG 191
            +  +      +++ II    
Sbjct: 199 SVEGEFNG-DTIELAIIGDEN 218

>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ... Length = 242

 Score = 81.6 bits (202), Expect = 1e-18
 Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 30/216 (13%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
           G+T  G+  ++GV+LG + RAT       S L++ +   KI  +   I C  +G  AD +
Sbjct: 26  GSTAIGIATKEGVVLGVEKRAT-------SPLLESDSIEKIVEIDRHIGCAMSGLTADAR 78

Query: 62  RLSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKYHGYLM------CAFII 108
            +     A             DI V      V  +             +       A +I
Sbjct: 79  SMIE--HARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLI 136

Query: 109 GGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAI 168
            G D+  G QLF     G+ + +   A+G+G + A   L   W  +L+ KE   L++  +
Sbjct: 137 AGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKIL 196

Query: 169 KAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
           K  +   L   +   ++ I K         +K+  +
Sbjct: 197 KQVMEEKLDE-NNAQLSCITKQ------DGFKIYDN 225

>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A* Length = 246

 Score = 80.4 bits (199), Expect = 3e-18
 Identities = 48/213 (22%), Positives = 87/213 (40%), Gaps = 31/213 (14%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
           G T  G+  ++GVIL AD R         S L++ +   KI ++ E I    +G  AD +
Sbjct: 34  GATAIGIKCKEGVILIADKRVG-------SKLLEKDTIEKIYKIDEHICAATSGLVADAR 86

Query: 62  RLSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGGI 111
            L     A +E Q  +      I V      +   KQ  T Y      G    + +I G+
Sbjct: 87  VLID--RARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFG---VSLLIAGV 141

Query: 112 DSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAG 171
           +     +L+     G+   +K  A+G G        E  ++++LS  + + L + A+   
Sbjct: 142 NE--VPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLS 199

Query: 172 ILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
           I  +L     ++V  ++ +      + +K +S 
Sbjct: 200 IESEL-VPENIEVGYVKVDD-----RTFKEVSP 226

>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D Length = 241

 Score = 79.5 bits (197), Expect = 5e-18
 Identities = 43/214 (20%), Positives = 83/214 (38%), Gaps = 28/214 (13%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           G+T  G+   +GV L  + R T      SSI       KI  +   I C  +G  AD K 
Sbjct: 34  GSTAIGIQTSEGVCLAVEKRITSPLMEPSSI------EKIVEIDAHIGCAMSGLIADAKT 87

Query: 63  LSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKYHGYLM-----CAFIIGG 110
           L    +A +E Q      +  + V      V+ +             M      A + GG
Sbjct: 88  LID--KARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGG 145

Query: 111 IDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKA 170
           +D   G QLF +   G+       A+G+  + A   L+  + ++++ KE +   +  +K 
Sbjct: 146 VDE-KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQ 204

Query: 171 GILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
            +   L + + +++  ++        + + + + 
Sbjct: 205 VMEEKLNA-TNIELATVQPG------QNFHMFTK 231

>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F Length = 254

 Score = 79.7 bits (197), Expect = 5e-18
 Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 23/199 (11%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
            +T  G+  +DGV+ G +           S L +     ++  +   +    AG  AD +
Sbjct: 33  SSTAIGIRCKDGVVFGVEKLVL-------SKLYEEGSNKRLFNVDRHVGMAVAGLLADAR 85

Query: 62  RLSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGGI 111
            L+    A  E    ++    +IP+      V M     TLY      G   C+F++G  
Sbjct: 86  SLAD--IAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFG---CSFMLGSY 140

Query: 112 DSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAG 171
               G QL+ I   G S+G+  CA+G   Q A   +E    + ++ ++ +  +   I   
Sbjct: 141 SVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIV 200

Query: 172 ILYDLGSGSKVDVTIIRKN 190
                    +++++ + + 
Sbjct: 201 HDEVKDKAFELELSWVGEL 219

>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C* Length = 248

 Score = 79.2 bits (196), Expect = 8e-18
 Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 38/217 (17%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
           G+T  G+   D V+LG + ++  K       L D     KI  L + +    AG  AD +
Sbjct: 29  GSTAVGVRGRDIVVLGVEKKSVAK-------LQDERTVRKICALDDNVCMAFAGLTADAR 81

Query: 62  RLSGLVEANLECQFPKAH-----TDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFII 108
            +     A +ECQ   +H       + V      +  +KQ  T        G    + +I
Sbjct: 82  IVIN--RARVECQ---SHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFG---ISALI 133

Query: 109 GGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAI 168
            G D  G  +L+     G+ H  K  A+G G +     LE  + +   E + LT+ +  I
Sbjct: 134 VGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKL-VI 192

Query: 169 KAGILYDLGSGSK-VDVTIIRKNGQVSSYKPYKVLSD 204
           KA +L  + SG K +++ ++R++      +  K+L+ 
Sbjct: 193 KA-LLEVVQSGGKNIELAVMRRD------QSLKILNP 222

>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A Length = 233

 Score = 78.8 bits (195), Expect = 9e-18
 Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 31/213 (14%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
           G+T  G+ + +GV+L +D +         S LI+ N   KI  + + +    +G  AD +
Sbjct: 34  GSTALGMKFANGVLLISDKKVR-------SRLIEQNSIEKIQLIDDYVAAVTSGLVADAR 86

Query: 62  RLSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGGI 111
            L     A +  Q  K    + + +   +  V    Q  T Y     +G    + I  GI
Sbjct: 87  VLVD--FARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYG---VSLIFAGI 141

Query: 112 DSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAG 171
           D   G +LF     G+ + +K  A+G+G    +  LE  +KENL EKE +TL + A+K+ 
Sbjct: 142 DQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSS 200

Query: 172 ILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
           +          ++  I           Y++   
Sbjct: 201 LEEGE-ELKAPEIASITVG------NKYRIYDQ 226

>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A Length = 233

 Score = 78.8 bits (195), Expect = 1e-17
 Identities = 40/200 (20%), Positives = 68/200 (34%), Gaps = 25/200 (12%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
           G    G+   +GV+L  + +         SIL D     K+  +++ I    +G   D +
Sbjct: 31  GAPSVGIKAANGVVLATEKKQK-------SILYDERSVHKVEPITKHIGLVYSGMGPDYR 83

Query: 62  RLSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGGI 111
            L     A    Q         IP    +  V  + Q  T        G    + +I G 
Sbjct: 84  VLVH--RARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFG---VSLLICGW 138

Query: 112 DSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAG 171
           +  G   LF     G+    K  AMG         LE  + E+L  ++ +   +  +K  
Sbjct: 139 NE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKES 197

Query: 172 ILYDLGSGSKVDVTIIRKNG 191
               +     ++V I  + G
Sbjct: 198 FEGQMTE-DNIEVGICNEAG 216

>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B Length = 261

 Score = 78.1 bits (193), Expect = 2e-17
 Identities = 51/211 (24%), Positives = 82/211 (38%), Gaps = 25/211 (11%)

Query: 3   GTTICGLLYEDGVILGADTRATMK--DASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
             T  G+L  DGV+L A+ R   K  D    S        KI +L+E + C  AG  +D 
Sbjct: 31  AGTCLGILANDGVLLAAERRNIHKLLDEVFFS-------EKIYKLNEDMACSVAGITSDA 83

Query: 61  KRLSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGG 110
             L+   E  L  Q         IP    +  +  IKQ  T +      G    + +  G
Sbjct: 84  NVLTN--ELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFG---VSLLYIG 138

Query: 111 IDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE-NLSEKEGLTLMVDAIK 169
            D   G QL+     G+  G K   +G     A+ +L+  +KE  ++ K  L L +  + 
Sbjct: 139 WDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLN 198

Query: 170 AGILYDLGSGSKVDVTIIRKNGQVSSYKPYK 200
             +     S  KV++  + +    +  +  K
Sbjct: 199 KTMDVSKLSAEKVEIATLTRENGKTVIRVLK 229

>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ... Length = 241

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 41/220 (18%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCS--KINRLSEKIYCCGAGSAADM 60
           GT   G+  ++ V+LG + R+T+K       L D   +  K++++   +    +G  AD 
Sbjct: 28  GTCAVGVKGKNCVVLGCERRSTLK-------LQDTRITPSKVSKIDSHVVLSFSGLNADS 80

Query: 61  KRLSGLVEANLECQFPKAH-----TDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFI 107
           + L    +A +E Q   +H       + V      V  ++Q  T        G    + +
Sbjct: 81  RILIE--KARVEAQ---SHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFG---VSTL 132

Query: 108 IGGIDSA-GGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVD 166
           I G D      +L+     G         +G   +     LE  +            +  
Sbjct: 133 IAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKL 192

Query: 167 AIKAGILYD-LGSGSK-VDVTIIRKNGQVSSYKPYKVLSD 204
            +++  L + + +G+K +++T+++ +           LS 
Sbjct: 193 TVRS--LLEVVQTGAKNIEITVVKPD------SDIVALSS 224

>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G Length = 246

 Score = 74.9 bits (185), Expect = 3e-16
 Identities = 40/214 (18%), Positives = 78/214 (36%), Gaps = 29/214 (13%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           G T   +  +D  ++    +   K    S++      + + +++E I C   G  AD + 
Sbjct: 36  GLTSVAVRGKDCAVIVTQKKVPDKLLDSSTV------THLFKITENIGCVMTGMTADSRS 89

Query: 63  LSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGGID 112
                 A  E    K     +IPV      +  I Q  T        G   C  I+ GID
Sbjct: 90  QVQ--RARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLG---CCMILIGID 144

Query: 113 SAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE--NLSEKEGLTLMVDAIKA 170
              G Q++     G   G K  A G     +   LE   K+  + + ++ +   +  +  
Sbjct: 145 EEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLST 204

Query: 171 GILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
            +  D    S+++V ++           +++L++
Sbjct: 205 VLSIDF-KPSEIEVGVVTVEN-----PKFRILTE 232

>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ... Length = 243

 Score = 74.6 bits (184), Expect = 3e-16
 Identities = 31/207 (14%), Positives = 64/207 (30%), Gaps = 31/207 (14%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
                 +  +D  ++ +  +           L+D    S I  +S  I     G   D +
Sbjct: 30  NINSLAVRGKDCTVVISQKKVP-------DKLLDPTTVSYIFCISRTIGMVVNGPIPDAR 82

Query: 62  RLSGLVEANLECQFPKAH--TDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGGI 111
             +    A  E    +     D+P       +  + Q  T   Y    G          +
Sbjct: 83  NAAL--RAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLG---VILTFVSV 137

Query: 112 DSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKEN-------LSEKEGLTLM 164
           D   G  ++     G   G+K  A G   Q     LE  +K++        S ++ +   
Sbjct: 138 DEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFA 197

Query: 165 VDAIKAGILYDLGSGSKVDVTIIRKNG 191
           +  +   +  +    + ++V +  K+ 
Sbjct: 198 ITHMIDALGTEFSK-NDLEVGVATKDK 223

>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ... Length = 233

 Score = 73.8 bits (182), Expect = 6e-16
 Identities = 40/219 (18%), Positives = 66/219 (30%), Gaps = 40/219 (18%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           G+   GL      +L A  R           L  +   KI +  E +    AG A D + 
Sbjct: 31  GSVTVGLRSNTHAVLVALKRNA-------DELSSYQ-KKIIKCDEHMGLSLAGLAPDARV 82

Query: 63  LSGLVEANLECQFPKAH-----TDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIG 109
           LS       +C             + V      +    Q  T       +G      +I 
Sbjct: 83  LSN--YLRQQCN---YSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYG---VGLLII 134

Query: 110 GIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE----NLSEKEGLTLMV 165
           G D   G  L      G+       A+G   Q A   LE         + +  E +   V
Sbjct: 135 GYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGV 193

Query: 166 DAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
           +AI   +  +  +   + + I+ K+       P+ +   
Sbjct: 194 EAISQSLRDESLTVDNLSIAIVGKD------TPFTIYDG 226

>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E Length = 263

 Score = 73.1 bits (180), Expect = 2e-15
 Identities = 46/262 (17%), Positives = 84/262 (32%), Gaps = 42/262 (16%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           G+   GL  +   +L A  RA        S L  H   KI  +   I    AG  AD + 
Sbjct: 32  GSATVGLKSKTHAVLVALKRAQ-------SELAAHQ-KKILHVDNHIGISIAGLTADARL 83

Query: 63  LSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQTLYKYHGY--LMCAFIIGGIDSAG 115
           L        EC   +      +PV   +  +    Q   + +G        +I G D   
Sbjct: 84  LCN--FMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-M 140

Query: 116 GNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKEN--LSEKEGLTLMVDAIKAGIL 173
           G  +F      +    +  ++G   Q A   LE    E    +  E +   + A++  + 
Sbjct: 141 GPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLP 200

Query: 174 YDLG-SGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKK 232
            +   +   V + I+ K+        + +  D                 +S  +  +E++
Sbjct: 201 AEQDLTTKNVSIGIVGKD------LEFTIYDD---------------DDVSPFLEGLEER 239

Query: 233 PSEGKKRKHGIDDSGDGPRSKM 254
           P    +     D+  +     M
Sbjct: 240 PQRKAQPAQPADEPAEKADEPM 261

>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A Length = 180

 Score = 70.8 bits (173), Expect = 3e-15
 Identities = 31/168 (18%), Positives = 55/168 (32%), Gaps = 12/168 (7%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCG-AGSAADMK 61
            TTI  + ++    +  D + T     G ++++ H   K+ +L       G AGS AD  
Sbjct: 5   ATTIFAVQHKGRSAMSGDGQVTF----GQAVVMKHTARKVRKLFNGKVLAGFAGSVADAF 60

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
            L    EA LE            +       + L K    L+       +  +G  ++  
Sbjct: 61  TLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIE 120

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIK 169
                        A+G+G   A+    A  K          +   A++
Sbjct: 121 PDDG-------ILAIGSGGNYALAAGRALKKHAGESMSASEIARAALE 161

>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ... Length = 244

 Score = 69.6 bits (171), Expect = 2e-14
 Identities = 50/216 (23%), Positives = 75/216 (34%), Gaps = 30/216 (13%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
           GTT  G+   DGV+   +   T       S L+      KI  +   I C  +G   D +
Sbjct: 30  GTTSIGIKCNDGVVFAVEKLIT-------SKLLVPQKNVKIQVVDRHIGCVYSGLIPDGR 82

Query: 62  RLSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGGI 111
            L        E    K    T IP+      +    Q  TLY      G    + I GG+
Sbjct: 83  HLVN--RGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFG---VSTIFGGV 137

Query: 112 DSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILE---AGWKENLSEKEGLTLMVDAI 168
           D   G  L+ +   GS  G+K  A G G Q A   LE       E LS +E +      I
Sbjct: 138 DK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKII 196

Query: 169 KAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
                 +     +++++         +   +K +  
Sbjct: 197 YLAHEDNKEKDFELEISWC---SLSETNGLHKFVKG 229

>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F* Length = 288

 Score = 70.1 bits (172), Expect = 2e-14
 Identities = 50/216 (23%), Positives = 75/216 (34%), Gaps = 30/216 (13%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNC-SKINRLSEKIYCCGAGSAADMK 61
           GTT  G+   DGV+   +   T       S L+      KI  +   I C  +G   D +
Sbjct: 34  GTTSIGIKCNDGVVFAVEKLIT-------SKLLVPQKNVKIQVVDRHIGCVYSGLIPDGR 86

Query: 62  RLSGLVEANLECQFPKA--HTDIPV---ICPVTMIKQ--TLYKY---HGYLMCAFIIGGI 111
            L        E    K    T IP+      +    Q  TLY      G    + I GG+
Sbjct: 87  HLVN--RGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFG---VSTIFGGV 141

Query: 112 DSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILE---AGWKENLSEKEGLTLMVDAI 168
           D   G  L+ +   GS  G+K  A G G Q A   LE       E LS +E +      I
Sbjct: 142 DK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKII 200

Query: 169 KAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
                 +     +++++         +   +K +  
Sbjct: 201 YLAHEDNKEKDFELEISWC---SLSETNGLHKFVKG 233

>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A Length = 174

 Score = 64.2 bits (156), Expect = 6e-13
 Identities = 34/158 (21%), Positives = 55/158 (34%), Gaps = 13/158 (8%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRL-SEKIYCCGAGSAADMKR 62
           TTI  +     V++G D + ++    G++++   N  K+ RL + K+    AG  AD   
Sbjct: 1   TTIVSVRRNGQVVVGGDGQVSL----GNTVM-KGNARKVRRLYNGKVLAGFAGGTADAFT 55

Query: 63  LSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSI 122
           L  L E  LE            +       + L K    L+ A          G      
Sbjct: 56  LFELFERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVA-DEKESLIITGIGDVVQ 114

Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWK-ENLSEKE 159
            +          A+G+G   A+    A  +   LS  E
Sbjct: 115 PEEDQ-----ILAIGSGGNYALSAARALVENTELSAHE 147

>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4 Length = 171

 Score = 58.1 bits (140), Expect = 9e-11
 Identities = 37/163 (22%), Positives = 56/163 (34%), Gaps = 24/163 (14%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCG-AGSAADMKR 62
           TTI  +      ++G D + T     GS++L   N  K+ +L E     G AGS AD   
Sbjct: 1   TTILVVRRNGQTVMGGDGQVTF----GSTVL-KGNARKVRKLGEGKVLAGFAGSVADAMT 55

Query: 63  LSGLVEANLECQFPKAHTDIPVICPVTMIKQ-----TLYKYHGYLMCAFIIGGIDSAGGN 117
           L    EA L                V + K       L +    L+ A        +G  
Sbjct: 56  LFDRFEAKLR-----EWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISGN- 109

Query: 118 QLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE-NLSEKE 159
                            A+G+G   A+   +A  +  +LS +E
Sbjct: 110 ------GEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSARE 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	260
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	100.0
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	100.0
1iru_I	234	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	100.0
3h4p_a	219	Proteasome subunit beta; core particle, cytoplasm,	100.0
1iru_N	219	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	100.0
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	100.0
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	100.0
1iru_L	204	20S proteasome; cell cycle, immune response, prote	100.0
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	100.0
1iru_H	205	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	100.0
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	100.0
1iru_M	213	20S proteasome; cell cycle, immune response, prote	100.0
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	100.0
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_K	201	20S proteasome; cell cycle, immune response, prote	100.0
1iru_J	205	20S proteasome; cell cycle, immune response, prote	100.0
1yar_A	233	Proteasome alpha subunit; proteasome 20S, PA26 pro	100.0
1ryp_A	243	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_C	261	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_E	242	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_B	233	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_C	244	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_D	248	20S proteasome; cell cycle, immune response, prote	100.0
1iru_A	246	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_D	241	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_E	241	20S proteasome; cell cycle, immune response, prote	100.0
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	100.0
1iru_G	254	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_G	244	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_F	233	20S proteasome; multicatalytic proteinase, protein	100.0
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	100.0
1j2p_A	246	Alpha-ring, proteasome alpha subunit; hydrolase; 2	100.0
1iru_F	263	20S proteasome; cell cycle, immune response, prote	100.0
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	100.0
1ryp_B	250	20S proteasome; multicatalytic proteinase, protein	100.0
3mi0_A	248	Proteasome subunit alpha; enzyme inhibitors, lacto	100.0
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	100.0
3nzj_F	288	Proteasome component C1; ubiquitin, protein degrad	100.0
1q5q_A	259	Proteasome alpha-type subunit 1; proteasome assemb	100.0
2z3b_A	180	ATP-dependent protease HSLV; N-terminal nucleophIl	100.0
1g3k_A	174	ATP-dependent protease HSLV; hydrolase; 1.90A {Hae	100.0
1m4y_A	171	ATP-dependent protease HSLV; N-terminal catalytic	100.0

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H

Probab=100.00  E-value=2.1e-58  Score=404.47  Aligned_cols=229  Identities=36%  Similarity=0.619  Sum_probs=215.5

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+++||||||+|+|.++     |.++.+++++|||+|++||+||+||..||++.++++++.+++.|+++++++++
T Consensus         1 TT~vgi~~kdgVVlaaD~r~t~-----g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   75 (234)
T 3unf_H            1 TTIAGLVFRDGVILGADTRATN-----DSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPR   75 (234)
T ss_dssp             CEEEEEECSSEEEEEECCCEEE-----TTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCC
T ss_pred             CeEEEEEeCCEEEEEECCCccc-----CCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCC
Confidence            7999999999999999999999     89999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHHH
Q psy15384         84 VICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTL  163 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~l  163 (260)
                      ++.+++++++++++|++||++++||||||++| |+||++||+|++.+++|+|+|+|+.+|+++||+.|+++||++||+++
T Consensus        76 v~~la~~l~~~l~~~~~p~~v~llvaG~D~~g-p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l  154 (234)
T 3unf_H           76 VATVTRILRQTLFRYQGHVGASLVVGGVDLNG-PQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQEL  154 (234)
T ss_dssp             HHHHHHHHHHHHHHTTTCSCEEEEEEEEETTE-EEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCccEEEEEEEEeCCC-CEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHH
Confidence            99999999999999999999999999999866 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccccccCCCCCcceeeeeeeeccccccccccc
Q psy15384        164 MVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKPSEGKKR  239 (260)
Q Consensus       164 a~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~~~~~~~~  239 (260)
                      +++||..++.+|..++++++|++|+++| +++++|+++++.|.+++..|+|++|||++|++.|.+++.|.++++.+
T Consensus       155 a~~al~~~~~~D~~sg~~iev~vi~~dg-~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (234)
T 3unf_H          155 LVEAITAGILSDLGSGGNVDACVITAGG-AKLQRALSTPTEPVQRAGRYRFAPGTTPVLTREVRPLTLELLEETVQ  229 (234)
T ss_dssp             HHHHHHHHHHHBTTCCSCEEEEEEESSC-EEEEEEEECCCCCCCCCCCCCCCTTCSCEEEEEEEEC----------
T ss_pred             HHHHHHHHHhhcCCCCCcEEEEEEECCC-EEEeCceecccccccccccccCCCCCcceeeEEEEEeeEEEEEeeee
Confidence            9999999999999999999999999999 99999999999999999999999999999999999999988887765

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2

Probab=100.00  E-value=2.3e-56  Score=397.30  Aligned_cols=226  Identities=38%  Similarity=0.660  Sum_probs=217.7

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.+.     |.++.+++++|||+|++||+||+||++||++.++++++.+++.|+++++++
T Consensus        28 ~GtTivgi~~kdGVVlAaD~r~t~-----g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~  102 (261)
T 3nzj_H           28 TGTTIVGVKFNNGVVIAADTRSTQ-----GPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSRE  102 (261)
T ss_dssp             --CCEEEEEETTEEEEEEECCEEE-----TTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             cCceEEEEEECCEEEEEEcCCccc-----CCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCC
Confidence            799999999999999999999999     999999999999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHH
Q psy15384         82 IPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGL  161 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai  161 (260)
                      +++..+++++++++++|++||++++||||||++| |+||++||+|++.+++++|+|+|+.+|+++||+.|+++||+|||+
T Consensus       103 ~~v~~~a~~l~~~l~~~~~~~gv~llvaG~D~~G-p~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEA~  181 (261)
T 3nzj_H          103 PRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTG-SHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAI  181 (261)
T ss_dssp             CCHHHHHHHHHHHHHHTTTCSCEEEEEEEEETTE-EEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCcccEEEEEEEEeCCC-CEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCCCHHHHH
Confidence            9999999999999999999999999999999876 999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccccccCCCCCcceeeeeeeeccccc
Q psy15384        162 TLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKP  233 (260)
Q Consensus       162 ~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~~  233 (260)
                      +++++||..++++|..++++++|++|+++|.+++++||..++.|.+++..|+||+|||+++++.|.+++...
T Consensus       182 ~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (261)
T 3nzj_H          182 KLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTAVLKESIVNICDIQ  253 (261)
T ss_dssp             HHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCCCCSSCCCCCTTCSCEEEEEEECCCC--
T ss_pred             HHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEeccccCCCcccccccccCCCCCCcceeeEEEEEeeeee
Confidence            999999999999999999999999999999899999999999999999999999999999999999996533

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H

Probab=100.00  E-value=1.1e-55  Score=387.17  Aligned_cols=227  Identities=40%  Similarity=0.698  Sum_probs=215.5

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+++||||||+|+|.+.     |.++.+++++|||+|++||+||+||..||++.++++++.+++.|+++++++++
T Consensus         1 TTivgi~~~dgVVlaaD~r~t~-----g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   75 (234)
T 1iru_I            1 TTIAGVVYKDGIVLGADTRATE-----GMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPR   75 (234)
T ss_dssp             CCEEEEEETTEEEEEECCCEES-----SSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCC
T ss_pred             CeEEEEEeCCEEEEEEcCCccc-----CceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            7999999999999999999999     89999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHHH
Q psy15384         84 VICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTL  163 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~l  163 (260)
                      ++.+++++++++|+|++||++++||||||++| |+||++||+|++.+++++|+|+|+..|+++||+.|+++||++||+++
T Consensus        76 v~~la~~l~~~l~~~~~~~~v~llvaG~D~~g-p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l  154 (234)
T 1iru_I           76 VVTANRMLKQMLFRYRGYIGAALVLGGVDVTG-PHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNL  154 (234)
T ss_dssp             HHHHHHHHHHHHHHTTTCSCEEEEEEEECSSC-EEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTH
T ss_pred             HHHHHHHHHHHHHhcCCCCceeEEEEEEcCCC-CEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHH
Confidence            99999999999999999999999999999866 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccccccCCCCCcceeeeeeeeccccccccc
Q psy15384        164 MVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKPSEGK  237 (260)
Q Consensus       164 a~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~~~~~~  237 (260)
                      +++||..++.+|..++++++|++|+++| +++++|++.++.|.+++..|+||+|||++|++.|.++..+++++.
T Consensus       155 a~~al~~a~~~d~~sg~~i~v~vi~k~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (234)
T 1iru_I          155 VSEAIAAGIFNDLGSGSNIDLCVISKNK-LDFLRPYTVPNKKGTRLGRYRCEKGTTAVLTEKITPLEIEVLEET  227 (234)
T ss_dssp             HHHHHHHHHHHCTTCCSCEEEEEEETTE-EECCSEEECCCCCCCCCSCCCCCTTCSCBSCCCCCBCC-------
T ss_pred             HHHHHHHHHHhcccCCCCEEEEEEECCc-EEEEcceecCccccccccCcccCCCceeeeEEEEEecchhheecc
Confidence            9999999999999999999999999999 999999999999999999999999999999999999976665543

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...

Probab=100.00  E-value=6.4e-55  Score=379.26  Aligned_cols=221  Identities=38%  Similarity=0.664  Sum_probs=215.2

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+++||||||+|+|.++     |.++..++++||++|++||+|++||..||++.++++++.+++.|+++++++++
T Consensus         1 TT~vgi~~~dgVvlaaD~r~t~-----g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   75 (222)
T 1ryp_I            1 TTIVGVKFNNGVVIAADTRSTQ-----GPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPR   75 (222)
T ss_dssp             CCEEEEEETTEEEEEECCCEEE-----TTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             CeEEEEEECCEEEEEEcCCccc-----CCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            7999999999999999999999     89999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHHH
Q psy15384         84 VICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTL  163 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~l  163 (260)
                      ++.+++++++++++|++||++++||||+|++| |+||++||+|++.+++++|+|+|+.+|+++||+.|+++||++||+++
T Consensus        76 v~~~a~~l~~~l~~~~~p~~v~~lvaG~D~~g-p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l  154 (222)
T 1ryp_I           76 VVSALQMLKQHLFKYQGHIGAYLIVAGVDPTG-SHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKL  154 (222)
T ss_dssp             HHHHHHHHHHHHHHTTTCSCEEEEEEEEETTE-EEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCCCeeEEEEEEeCCC-CEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHH
Confidence            99999999999999999999999999999865 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccccccCCCCCcceeeeeeeecc
Q psy15384        164 MVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE  230 (260)
Q Consensus       164 a~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~  230 (260)
                      +++||..++++|..++++++|++|++++++++++|+.++++|.+++..|.||+|||+++++.|.+++
T Consensus       155 a~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (222)
T 1ryp_I          155 ASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTAVLKESIVNIC  221 (222)
T ss_dssp             HHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCCCCSSCCCCCTTCSCEEEEEECCCC
T ss_pred             HHHHHHHHHhccccCCCcEEEEEEECCCCEEEEeceecCCcccccccCcccCCCceeeeeeeeEecc
Confidence            9999999999999999999999999988799999999999999999999999999999999998875

>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=1.5e-49  Score=344.78  Aligned_cols=207  Identities=29%  Similarity=0.468  Sum_probs=190.7

Q ss_pred             cceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCC
Q psy15384          3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDI   82 (260)
Q Consensus         3 Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i   82 (260)
                      |||+|||+++||||||+|+|.++     |.++..++++||++|++||+|++||+.||++.++++++.+++.|++++++++
T Consensus         1 Gtt~vgi~~~dgVvlaaD~r~~~-----g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~   75 (219)
T 3h4p_a            1 MTTTVGLICDDAVILATDKRASL-----GNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNI   75 (219)
T ss_dssp             -CCEEEEEETTEEEEECCCCEEE-----TTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred             CccEEEEEECCEEEEEEcCCccc-----CCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            89999999999999999999999     8999999999999999999999999999999999999999999999999999


Q ss_pred             ChHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEEeeC-EEEEcCChHHHHHHHHhccCCCCCHHHH
Q psy15384         83 PVICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHK-FCAMGTGLQPAMGILEAGWKENLSEKEG  160 (260)
Q Consensus        83 ~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~-~~aiGsgs~~a~~~Le~~y~~~ms~eea  160 (260)
                      ++..+++++++++++++ +||++++||||||++++|+||++||+|++.+++ ++|+|+|+.+|+++||+.|+++||++||
T Consensus        76 ~v~~la~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea  155 (219)
T 3h4p_a           76 PPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEG  155 (219)
T ss_dssp             CHHHHHHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHH
Confidence            99999999999999875 599999999999985569999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccccccCCCCCcceeeeeeeecccccccc
Q psy15384        161 LTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKPSEG  236 (260)
Q Consensus       161 i~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~~~~~  236 (260)
                      ++++++||..++++|..++++++|++|+++| ++++                     +.+++++++..++.++..+
T Consensus       156 ~~la~~al~~~~~rd~~sg~~i~v~vi~~~g-~~~l---------------------~~~ei~~~l~~~~~~~~~~  209 (219)
T 3h4p_a          156 IKLALNALKSAMERDTFSGNGISLAVITKDG-VKIF---------------------EDEEIEKILDSMKAKPKKK  209 (219)
T ss_dssp             HHHHHHHHHHHHTSCSSCCSCCCEEEEETTE-EEEC---------------------CHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC-eEEc---------------------CHHHHHHHHHHhhcccccc
Confidence            9999999999999999999999999999998 9998                     5566677777776655443

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M

Probab=100.00  E-value=1.3e-48  Score=338.38  Aligned_cols=202  Identities=19%  Similarity=0.209  Sum_probs=194.0

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCC-CCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFP-KAHT   80 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~-~~~~   80 (260)
                      +|||+|||+++||||||+|+|.+.     |.++.+++++||++|++||+|++||..||++.|+++++.+++.|++ ++++
T Consensus         7 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (219)
T 1iru_N            7 TGTSVLGVKFEGGVVIAADMLGSY-----GSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH   81 (219)
T ss_dssp             EECCCEEEEETTEEEEEEECCEEE-----TTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             CCceEEEEEeCCEEEEEECCcccc-----CcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            699999999999999999999999     9999999999999999999999999999999999999999999998 9999


Q ss_pred             CCChHhHHHHHHHHHHhcc---CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCC--CC
Q psy15384         81 DIPVICPVTMIKQTLYKYH---GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE--NL  155 (260)
Q Consensus        81 ~i~v~~l~~~l~~~l~~~~---~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~--~m  155 (260)
                      +++++.+++++++++|.++   +||++++||||+|+. +|+||++||+|++.+++++|+|+|+.+|+++||+.|++  +|
T Consensus        82 ~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~-gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~m  160 (219)
T 1iru_N           82 SYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADG-ESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVL  160 (219)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETT-EEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCC
T ss_pred             CCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEECC-CCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCCC
Confidence            9999999999999988653   599999999999976 59999999999999999999999999999999999999  99


Q ss_pred             CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccc
Q psy15384        156 SEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCV  210 (260)
Q Consensus       156 s~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~  210 (260)
                      |++||++++++||..+.++|..++++++|++|+++| ++++++++++..|.+.+.
T Consensus       161 t~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g-~~~~~~~~i~~~~~~~~~  214 (219)
T 1iru_N          161 SQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKG-VEIEGPLSTETNWDIAHM  214 (219)
T ss_dssp             CHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE-EEEEEEECCCCCCGGGGC
T ss_pred             CHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCC-EEEcCCeeccchhhHHHh
Confidence            999999999999999999999999999999999999 999999999999997643

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...

Probab=100.00  E-value=2.4e-48  Score=339.95  Aligned_cols=207  Identities=20%  Similarity=0.214  Sum_probs=197.8

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCC-----
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFP-----   76 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~-----   76 (260)
                      +|||+|||+++||||||+|+|.+.     |.++.+++++||++|++||+|++||..||++.|+++++.+++.|++     
T Consensus         7 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (233)
T 1ryp_N            7 TGTSVISMKYDNGVIIAADNLGSY-----GSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA   81 (233)
T ss_dssp             EECCEEEEEETTEEEEEEECCEEE-----TTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred             CCceEEEEEECCEEEEEEcCcccc-----CCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence            699999999999999999999999     8999999999999999999999999999999999999999999999     


Q ss_pred             CCCCCCChHhHHHHHHHHHHhcc---CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCC
Q psy15384         77 KAHTDIPVICPVTMIKQTLYKYH---GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE  153 (260)
Q Consensus        77 ~~~~~i~v~~l~~~l~~~l~~~~---~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~  153 (260)
                      +++++++++.+++++++++|.++   +||++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|++
T Consensus        82 ~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~  161 (233)
T 1ryp_N           82 DAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDR  161 (233)
T ss_dssp             TTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCSS
T ss_pred             hcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhcc
Confidence            89999999999999999988764   599999999999987569999999999999999999999999999999999999


Q ss_pred             -----CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcC-CcEEEccCccccCC-CCcccccccC
Q psy15384        154 -----NLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKN-GQVSSYKPYKVLSD-RMPKCVQCII  214 (260)
Q Consensus       154 -----~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~-g~~~~l~~~~~~~~-~~~~~~~~~~  214 (260)
                           +||++||++++++||..++++|..++++++|++|+++ | ++++.+++++.. |.+......|
T Consensus       162 ~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g-~~~~~~~~i~~~~w~~~~~~~~~  228 (233)
T 1ryp_N          162 ESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG-LTFKKNLQVENMKWDFAKDIKGY  228 (233)
T ss_dssp             GGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE-EEEEEEEECCSCCCGGGGGCCSS
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCC-eEEcChHhcccccchhhhhccCc
Confidence                 9999999999999999999999999999999999999 7 999999999999 9987655555

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*

Probab=100.00  E-value=2e-47  Score=340.57  Aligned_cols=207  Identities=20%  Similarity=0.214  Sum_probs=197.7

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCC-----
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFP-----   76 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~-----   76 (260)
                      +|||+|||+++||||||+|+|.+.     |.++.+++++||++|++||+||+||..||++.|+++++.+++.|++     
T Consensus        40 ~GtT~vgi~~~dgVVlAaD~r~t~-----g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~  114 (266)
T 1g0u_M           40 TGTSVISMKYDNGVIIAADNLGSY-----GSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA  114 (266)
T ss_dssp             EECCEEEEEETTEEEEEEECCEEE-----TTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred             cCceEEEEEECCEEEEEEcCCccc-----CceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchh
Confidence            699999999999999999999999     8999999999999999999999999999999999999999999998     


Q ss_pred             CCCCCCChHhHHHHHHHHHHhcc---CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCC
Q psy15384         77 KAHTDIPVICPVTMIKQTLYKYH---GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE  153 (260)
Q Consensus        77 ~~~~~i~v~~l~~~l~~~l~~~~---~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~  153 (260)
                      +++++++++.+++++++++|.++   +||++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|++
T Consensus       115 ~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~  194 (266)
T 1g0u_M          115 DAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDR  194 (266)
T ss_dssp             TTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTTTCSS
T ss_pred             hcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHHhhcc
Confidence            89999999999999999988764   599999999999987569999999999999999999999999999999999999


Q ss_pred             -----CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcC-CcEEEccCccccCC-CCcccccccC
Q psy15384        154 -----NLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKN-GQVSSYKPYKVLSD-RMPKCVQCII  214 (260)
Q Consensus       154 -----~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~-g~~~~l~~~~~~~~-~~~~~~~~~~  214 (260)
                           +||++||++++++||..++++|..++++++|++|+++ | ++++.+++++.. |.+++....|
T Consensus       195 ~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g-~~~~~~~ei~~~~w~~~~~~~~~  261 (266)
T 1g0u_M          195 ESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG-LTFKKNLQVENMKWDFAKDIKGY  261 (266)
T ss_dssp             GGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE-EEEEEEEECCCCCCGGGGGCCSS
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCC-eEEcCHHHhhhhhhhHHhhhcCc
Confidence                 9999999999999999999999999999999999999 7 999999999999 9987655555

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4

Probab=100.00  E-value=2.5e-47  Score=326.26  Aligned_cols=192  Identities=28%  Similarity=0.437  Sum_probs=184.1

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+++||||||+|+|.++     |+++..++++||++|++||+|++||..||++.++++++.+++.|+++++++++
T Consensus         1 tt~vgi~~~dgVvlaad~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   75 (202)
T 1j2q_H            1 TTTVGLVCKDGVVMATEKRATM-----GNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPT   75 (202)
T ss_dssp             CCEEEEEETTEEEEEEECCEEE-----TTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CcEEEEEeCCEEEEEECCCcCc-----CCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            7999999999999999999999     99999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEEeeC-EEEEcCChHHHHHHHHhccCCCCCHHHHH
Q psy15384         84 VICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHK-FCAMGTGLQPAMGILEAGWKENLSEKEGL  161 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~-~~aiGsgs~~a~~~Le~~y~~~ms~eeai  161 (260)
                      ++.+++++++++++++ +||++++||||||++| |+||++||+|++.+++ ++|+|+|+.+|+++||+.|+++||++||+
T Consensus        76 ~~~~a~~l~~~~~~~r~rp~~~~~lvaG~D~~g-p~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~  154 (202)
T 1j2q_H           76 VRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEG-KSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAV  154 (202)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTE-EEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCCCceEEEEEEEEeCCC-CEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHH
Confidence            9999999999998875 5999999999999865 9999999999999999 99999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384        162 TLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL  202 (260)
Q Consensus       162 ~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~  202 (260)
                      +++++||..++++|..++++++|++|+++| ++.+.+.+++
T Consensus       155 ~la~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~l~~~ei~  194 (202)
T 1j2q_H          155 ELAVRAIYSAMKRDSASGDGIDVVKITEDE-FYQYSPEEVE  194 (202)
T ss_dssp             HHHHHHHHHHHTTCTTSCSCEEEEEECSSC-EEECHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCcEEEEEEeCCC-eEEeCHHHHH
Confidence            999999999999999899999999999998 9998666553

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K

Probab=100.00  E-value=4.3e-47  Score=325.32  Aligned_cols=192  Identities=23%  Similarity=0.335  Sum_probs=183.9

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+++||||||+|+|.++     |+++..++++||++|++||+|++||..||++.++++++.+++.|+++++++++
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   75 (204)
T 1iru_L            1 TTTLAFKFRHGVIVAADSRATA-----GAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERIS   75 (204)
T ss_dssp             CCEEEEEETTEEEEEECCCEEE-----TTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CeEEEEEeCCEEEEEEcCCccc-----CCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            7999999999999999999999     99999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhccC-cceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHH
Q psy15384         84 VICPVTMIKQTLYKYHG-YLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLT  162 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~~-p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~  162 (260)
                      ++.+++++++++++++. ||++++||||||++| |+||++||+|++.+++++|+|+|+.+|+++||+.|+++||++||++
T Consensus        76 v~~la~~l~~~~~~~r~~~~~v~~lvaG~D~~g-p~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~  154 (204)
T 1iru_L           76 VAAASKLLANMVYQYKGMGLSMGTMICGWDKRG-PGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYD  154 (204)
T ss_dssp             HHHHHHHHHHHHHTTTTSCCCBEEEEEEECSSS-EEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCeeEEEEEEEEeCCC-CEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHH
Confidence            99999999999998865 899999999999865 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384        163 LMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL  202 (260)
Q Consensus       163 la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~  202 (260)
                      ++++||..++++|..++++++|++|+++| ++.+.+.+++
T Consensus       155 l~~~al~~~~~rd~~s~~~i~v~vi~~~g-~~~l~~~ei~  193 (204)
T 1iru_L          155 LARRAIYQATYRDAYSGGAVNLYHVREDG-WIRVSSDNVA  193 (204)
T ss_dssp             HHHHHHHHHHHHBTTCCSEEEEEEECSSC-EEEEEEEEHH
T ss_pred             HHHHHHHHHHHhCccCCCceEEEEEeCCc-eEEeCHHHHH
Confidence            99999999999999899999999999998 9988555543

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H

Probab=100.00  E-value=2.6e-47  Score=330.13  Aligned_cols=194  Identities=27%  Similarity=0.434  Sum_probs=184.2

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.++     |+++..++++||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus         7 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (217)
T 1yar_H            7 TGTTTVGITLKDAVIMATERRVTM-----ENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVN   81 (217)
T ss_dssp             --CCEEEEEETTEEEEEECCCEEE-----TTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCccEEEEEeCCEEEEEEcCCCCC-----CCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            799999999999999999999999     899999999999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHH
Q psy15384         82 IPVICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEG  160 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eea  160 (260)
                      ++++.+++++++++++++ +||++++|||||| +| |+||++||+|++.+++++|+|+|+.+|+++||+.|+++||++||
T Consensus        82 ~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D-~g-p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea  159 (217)
T 1yar_H           82 MPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TA-PHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEG  159 (217)
T ss_dssp             CCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES-SS-EEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC-CC-CEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHHH
Confidence            999999999999999875 5999999999999 65 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEEEEEEEc-CCcEEEccCccccC
Q psy15384        161 LTLMVDAIKAGILYDLGSGSKVDVTIIRK-NGQVSSYKPYKVLS  203 (260)
Q Consensus       161 i~la~~al~~~~~~D~~sg~~iev~vit~-~g~~~~l~~~~~~~  203 (260)
                      ++++++||..++++|..++++++|++|++ +| ++.+.+.+++.
T Consensus       160 ~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g-~~~~~~~ei~~  202 (217)
T 1yar_H          160 VDLVIRAISAAKQRDSASGGMIDVAVITRKDG-YVQLPTDQIES  202 (217)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSCCEEEEEETTTE-EEECCHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCCcEEEEEEECCCC-EEEcCHHHHHH
Confidence            99999999999999998999999999999 66 99887766644

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N

Probab=100.00  E-value=3.9e-47  Score=325.81  Aligned_cols=198  Identities=26%  Similarity=0.435  Sum_probs=187.4

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+++||||||+|+|.++     |.++..++++||++|++||+|++||..||++.++++++.+++.|+++++++++
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   75 (205)
T 1iru_H            1 TTIMAVQFDGGVVLGADSRTTT-----GSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPL   75 (205)
T ss_dssp             CCEEEEEETTEEEEEECCCEEE-----TTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             CcEEEEEeCCEEEEEEcCCccc-----CcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            7999999999999999999999     88999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHHH
Q psy15384         84 VICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTL  163 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~l  163 (260)
                      ++.+++++++++++|+.||++++||||||++++|+||++||+|++.+++++++|+|+.+|+++||+.|+++||++||+++
T Consensus        76 v~~la~~l~~~~~~~~~p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l  155 (205)
T 1iru_H           76 VHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQF  155 (205)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcCccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            99999999999999988999999999999855699999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcEEEEEEEcCCc-EEEccCccccCCCC
Q psy15384        164 MVDAIKAGILYDLGSGSKVDVTIIRKNGQ-VSSYKPYKVLSDRM  206 (260)
Q Consensus       164 a~~al~~~~~~D~~sg~~iev~vit~~g~-~~~l~~~~~~~~~~  206 (260)
                      +++||..++++|..++++++|++|+++|. ++++.+.+++..+.
T Consensus       156 ~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~  199 (205)
T 1iru_H          156 TANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAV  199 (205)
T ss_dssp             HHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCC
T ss_pred             HHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHh
Confidence            99999999999998999999999999983 45677776655444

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...

Probab=100.00  E-value=3.1e-47  Score=324.64  Aligned_cols=191  Identities=20%  Similarity=0.258  Sum_probs=183.5

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+++||||||+|+|.+.     |.++.+++++||++|++||+|++||..||++.++++++.+++.|+++++++++
T Consensus         2 tt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   76 (198)
T 1ryp_K            2 DIILGIRVQDSVILASSKAVTR-----GISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELS   76 (198)
T ss_dssp             CCEEEEECSSCEEEEEECCEEE-----TTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             ceEEEEEECCEEEEEECCCccc-----CCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            7999999999999999999999     88998899999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhcc---CcceeeEEEEEEeC-CCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHH
Q psy15384         84 VICPVTMIKQTLYKYH---GYLMCAFIIGGIDS-AGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKE  159 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~---~p~g~sliiaG~D~-~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~ee  159 (260)
                      ++.+++++++++++++   +||++++||||||+ +++|+||++||+|++.+++++|+|+|+.+|+++||+.|+++||++|
T Consensus        77 v~~la~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~ee  156 (198)
T 1ryp_K           77 PQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEE  156 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHH
Confidence            9999999999998874   49999999999997 4569999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcc
Q psy15384        160 GLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYK  200 (260)
Q Consensus       160 ai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~  200 (260)
                      |++++++||..+.++|..++++++|++|+++| ++.++|++
T Consensus       157 a~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~~~~~~  196 (198)
T 1ryp_K          157 GLDLLKLCVQELEKRMPMDFKGVIVKIVDKDG-IRQVDDFQ  196 (198)
T ss_dssp             HHHHHHHHHHHHHHHCSBCCCCEEEEEEETTE-EEEECCCS
T ss_pred             HHHHHHHHHHHHHHhCccCCCceEEEEEcCCC-EEEecccc
Confidence            99999999999999999999999999999998 99998865

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...

Probab=100.00  E-value=5e-47  Score=326.89  Aligned_cols=195  Identities=21%  Similarity=0.291  Sum_probs=186.5

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+++||||||+|+|.++     |+++..++++||++|++||+|++||..||++.++++++.+++.|+++++++++
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   75 (212)
T 1ryp_L            1 TTTLAFRFQGGIIVAVDSRATA-----GNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERIS   75 (212)
T ss_dssp             CCEEEEEETTEEEEEECCCEEE-----TTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CcEEEEEeCCEEEEEEcCCccc-----CCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            7999999999999999999999     99999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhccC-cceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHH
Q psy15384         84 VICPVTMIKQTLYKYHG-YLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLT  162 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~~-p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~  162 (260)
                      ++.+++++++++++|+. ||++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|+++||++||++
T Consensus        76 v~~la~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~  155 (212)
T 1ryp_L           76 VAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALY  155 (212)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHH
Confidence            99999999999998865 89999999999965569999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCC
Q psy15384        163 LMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD  204 (260)
Q Consensus       163 la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~  204 (260)
                      ++++||..++++|..++++++|++|+++| ++++.+.+++..
T Consensus       156 la~~al~~~~~rd~~s~~~i~v~vi~~~g-~~~~~~~ei~~~  196 (212)
T 1ryp_L          156 LGKRSILAAAHRDAYSGGSVNLYHVTEDG-WIYHGNHDVGEL  196 (212)
T ss_dssp             HHHHHHHHHHHHBTTCCSEEEEEEEETTE-EEEEEEEEHHHH
T ss_pred             HHHHHHHHHHHhccccCCceEEEEEcCCc-eEEECHHHHHHH
Confidence            99999999999999999999999999998 999977766544

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5

Probab=100.00  E-value=5.2e-47  Score=341.15  Aligned_cols=196  Identities=22%  Similarity=0.308  Sum_probs=187.7

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|++.     |.++..++++||++|++||+||+||.+||++.+.++++.+++.|+++++++
T Consensus        74 ~GtT~vgik~~dGVVlAaD~r~t~-----G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~  148 (287)
T 3nzj_K           74 HGTTTLAFRFQGGIIVAVDSRATA-----GNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKER  148 (287)
T ss_dssp             --CCEEEEEETTEEEEEECCCEEE-----TTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCceEEEEEECCEEEEEEcccccc-----CceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            799999999999999999999999     999999999999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhccC-cceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHH
Q psy15384         82 IPVICPVTMIKQTLYKYHG-YLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEG  160 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~~~-p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eea  160 (260)
                      ++++.+++++++++|+|+. ||++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|+++||++||
T Consensus       149 isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~eEA  228 (287)
T 3nzj_K          149 ISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDA  228 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCCHHHH
T ss_pred             CCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCCHHHH
Confidence            9999999999999998865 899999999999666699999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccC
Q psy15384        161 LTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLS  203 (260)
Q Consensus       161 i~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~  203 (260)
                      ++++++||..+++||..++++++|++|+++| ++++.+++++.
T Consensus       229 i~la~~aL~~a~~rD~~sg~~i~V~vItkdg-~~~l~~~ev~~  270 (287)
T 3nzj_K          229 LYLGKRSILAAAHRDAYSGGSVNLYHVTEDG-WIYHGNHDVGE  270 (287)
T ss_dssp             HHHHHHHHHHHHHHBTTCCSEEEEEEEETTE-EEEEEEEEHHH
T ss_pred             HHHHHHHHHHHHhhCcCCCCceEEEEEeCCC-EEEeCHHHHHH
Confidence            9999999999999999999999999999999 99998887754

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L

Probab=100.00  E-value=2e-46  Score=323.17  Aligned_cols=188  Identities=23%  Similarity=0.279  Sum_probs=180.7

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.+.     |.++.+++++||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus         8 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~   82 (213)
T 1iru_M            8 NGGTILAIAGEDFAIVASDTRLSE-----GFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKA   82 (213)
T ss_dssp             CCCEEEEEEETTEEEEEEECCEEE-----TTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCCcEEEEEeCCEEEEEECCCccc-----CCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            799999999999999999999999     899999999999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhc---------c
Q psy15384         82 IPVICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAG---------W  151 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~---------y  151 (260)
                      ++++.++++|++++|.++ +||++++||||||++|+|+||++||+|++.+++++|+|+|+.+|+++||+.         |
T Consensus        83 ~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~  162 (213)
T 1iru_M           83 MTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVE  162 (213)
T ss_dssp             CCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCC
T ss_pred             CCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccccC
Confidence            999999999999987654 699999999999987779999999999999999999999999999999999         8


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEE
Q psy15384        152 KENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSS  195 (260)
Q Consensus       152 ~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~  195 (260)
                      +++||++||++++++||..++++|..++.+++|++|+++| ++.
T Consensus       163 ~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~  205 (213)
T 1iru_M          163 HVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG-IRE  205 (213)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTE-EEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCC-eEE
Confidence            8999999999999999999999999999999999999998 654

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N

Probab=100.00  E-value=1.2e-46  Score=321.32  Aligned_cols=196  Identities=23%  Similarity=0.378  Sum_probs=185.7

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+++||||||+|+|.++     |.++..++++||++|++||+|++||..||++.++++++.+++.|+++++++++
T Consensus         1 TT~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   75 (199)
T 3unf_N            1 TTIMAVEFDGGVVVGSDSRVSA-----GTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPL   75 (199)
T ss_dssp             CEEEEEECSSCEEEEECCCEEE-----TTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             CeEEEEEeCCeEEEEECCcccC-----CceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            7999999999999999999999     88999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeC-EEEEcCChHHHHHHHHhccCCCCCHHHHHH
Q psy15384         84 VICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHK-FCAMGTGLQPAMGILEAGWKENLSEKEGLT  162 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~-~~aiGsgs~~a~~~Le~~y~~~ms~eeai~  162 (260)
                      ++.++++++++++++++||++++||||||++++|+||+  |+|++.++. ++++|+|+.+|+++||+.|+++||++||++
T Consensus        76 v~~~a~~l~~~l~~~~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~  153 (199)
T 3unf_N           76 VLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRR  153 (199)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHH
Confidence            99999999999999999999999999999866699999  999986655 666799999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEEEcCC-cEEEccCccccCCCC
Q psy15384        163 LMVDAIKAGILYDLGSGSKVDVTIIRKNG-QVSSYKPYKVLSDRM  206 (260)
Q Consensus       163 la~~al~~~~~~D~~sg~~iev~vit~~g-~~~~l~~~~~~~~~~  206 (260)
                      ++++||..++++|..++++++|++|+++| .++++.+.+++..|.
T Consensus       154 la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~  198 (199)
T 3unf_N          154 FTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYD  198 (199)
T ss_dssp             HHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCCC
T ss_pred             HHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCccccc
Confidence            99999999999999999999999999998 467798888887775

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...

Probab=100.00  E-value=1.9e-46  Score=321.71  Aligned_cols=187  Identities=27%  Similarity=0.506  Sum_probs=180.4

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.+.     |.++..++++||++|++||+|++||..||++.++++++.+++.|++++++ 
T Consensus         8 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-   81 (205)
T 1ryp_H            8 LGASIMAVTFKDGVILGADSRTTT-----GAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-   81 (205)
T ss_dssp             CCCCEEEEEETTEEEEEECCCEEE-----TTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred             CCceEEEEEeCCEEEEEEcCCccc-----CcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence            799999999999999999999999     88999999999999999999999999999999999999999999999999 


Q ss_pred             CChHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHH
Q psy15384         82 IPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGL  161 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai  161 (260)
                      ++++.+++++++++++++..|++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|+++||++||+
T Consensus        82 ~~v~~la~~l~~~~~~~~~~~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~  161 (205)
T 1ryp_H           82 PSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETV  161 (205)
T ss_dssp             CCHHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhhcCceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCCHHHHH
Confidence            99999999999999998777999999999997556999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEE
Q psy15384        162 TLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSS  195 (260)
Q Consensus       162 ~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~  195 (260)
                      +++++||..++++|..++++++|++|+++| ++.
T Consensus       162 ~l~~~al~~a~~~d~~sg~~i~v~vi~~~g-~~~  194 (205)
T 1ryp_H          162 DFIKHSLSQAIKWDGSSGGVIRMVVLTAAG-VER  194 (205)
T ss_dssp             HHHHHHHHHHHHHBTTCCSCEEEEEEETTE-EEE
T ss_pred             HHHHHHHHHHHHhCCccCCeEEEEEEcCCC-EEE
Confidence            999999999999999999999999999998 553

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...

Probab=100.00  E-value=5.6e-46  Score=322.84  Aligned_cols=189  Identities=22%  Similarity=0.252  Sum_probs=181.5

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCC-C
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAH-T   80 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~   80 (260)
                      +|||+|||+++||||||+|+|.+.     |.++.+++++|||+|++||+|++||..||++.|+++++.+++.|+++++ +
T Consensus         8 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~   82 (222)
T 1ryp_M            8 NGGTILGIAGEDFAVLAGDTRNIT-----DYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDK   82 (222)
T ss_dssp             CCCEEEEEECSSCEEEEEECCEEE-----TTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCccEEEEEeCCEEEEEEeccccc-----CCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            799999999999999999999999     8999999999999999999999999999999999999999999999999 9


Q ss_pred             CCChHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhc---------
Q psy15384         81 DIPVICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAG---------  150 (260)
Q Consensus        81 ~i~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~---------  150 (260)
                      +++++.+++++++++|.++ +||++++||||||++|+|+||++||+|++.+++++|+|+|+.+|+++||+.         
T Consensus        83 ~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~  162 (222)
T 1ryp_M           83 KLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEP  162 (222)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccccccc
Confidence            9999999999999998764 599999999999988789999999999999999999999999999999998         


Q ss_pred             --------cCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEc
Q psy15384        151 --------WKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSY  196 (260)
Q Consensus       151 --------y~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l  196 (260)
                              |+++||+|||++++++||..++++|..++++++|++|+++| ++..
T Consensus       163 ~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g-~~~~  215 (222)
T 1ryp_M          163 GTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDG-VRKE  215 (222)
T ss_dssp             TSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE-EEEE
T ss_pred             ccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCC-eEEE
Confidence                    88999999999999999999999999999999999999998 6543

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J

Probab=100.00  E-value=3.2e-46  Score=319.20  Aligned_cols=191  Identities=17%  Similarity=0.236  Sum_probs=181.0

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+++||||||+|+|.+.     |+++..++++||++|++||+|++||..||++.++++++.+++.|+++++++++
T Consensus         2 tt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   76 (201)
T 1iru_K            2 EYLIGIQGPDYVLVASDRVAAS-----NIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELS   76 (201)
T ss_dssp             CCEEEEECSSEEEEEEECCEEE-----TTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ceEEEEEeCCEEEEEEcCcccc-----CcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            7999999999999999999999     99999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHH-Hh-c-cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHH
Q psy15384         84 VICPVTMIKQTL-YK-Y-HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEG  160 (260)
Q Consensus        84 v~~l~~~l~~~l-~~-~-~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eea  160 (260)
                      ++.+++++++.+ ++ + ++||++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|+++||++||
T Consensus        77 v~~~a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea  156 (201)
T 1iru_K           77 PTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERA  156 (201)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHH
Confidence            999999998765 43 2 35999999999999855699999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcc
Q psy15384        161 LTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYK  200 (260)
Q Consensus       161 i~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~  200 (260)
                      ++++++||..+.++|..++.+++|++|+++| ++.++++.
T Consensus       157 ~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g-~~~~~~~~  195 (201)
T 1iru_K          157 VELLRKCLEELQKRFILNLPTFSVRIIDKNG-IHDLDNIS  195 (201)
T ss_dssp             HHHHHHHHHHHHHTBCBCCCCEEEEEEETTE-EECCCCBC
T ss_pred             HHHHHHHHHHHHhhccccCCceEEEEEcCCC-eEEeeccc
Confidence            9999999999999999999999999999999 99887653

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I

Probab=100.00  E-value=8.4e-46  Score=317.52  Aligned_cols=189  Identities=22%  Similarity=0.292  Sum_probs=178.7

Q ss_pred             CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCC
Q psy15384          1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHT   80 (260)
Q Consensus         1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~   80 (260)
                      .+|||+|||+++||||||+|+|.+.     |.++.+++++||++|++||+|++||..||++.++++++.+++.|++++++
T Consensus         6 ~~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~   80 (205)
T 1iru_J            6 YNGGAVMAMKGKNCVAIAADRRFGI-----QAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGR   80 (205)
T ss_dssp             SSCCEEEEEECSSEEEEEEECCEEE-----TTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCeEEEEEeCCEEEEEECCcccc-----CCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            3799999999999999999999999     88998889999999999999999999999999999999999999999999


Q ss_pred             CCChHhHHHHHHHHHHhcc-CcceeeEEEEEEeC-CCCceEEEEeecceEEee-CEEEEcCChHHHHHHHHhccCCCCCH
Q psy15384         81 DIPVICPVTMIKQTLYKYH-GYLMCAFIIGGIDS-AGGNQLFSIFQHGSSHGH-KFCAMGTGLQPAMGILEAGWKENLSE  157 (260)
Q Consensus        81 ~i~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~-~g~p~Ly~idp~Gs~~~~-~~~aiGsgs~~a~~~Le~~y~~~ms~  157 (260)
                      +++++.+++++++++|.++ +||++++||||||+ +++|+||++||+|++.++ +|+|+|+|+.+|+++||+.|+++||+
T Consensus        81 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~  160 (205)
T 1iru_J           81 QIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP  160 (205)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCH
Confidence            9999999999999988654 59999999999996 456999999999999766 67999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEE
Q psy15384        158 KEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSS  195 (260)
Q Consensus       158 eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~  195 (260)
                      +||++++++||..++++|..++.+++|++|+++| ++.
T Consensus       161 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~  197 (205)
T 1iru_J          161 DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDK-ITT  197 (205)
T ss_dssp             HHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSB-EEE
T ss_pred             HHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCC-EEE
Confidence            9999999999999999999999999999999998 553

>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A

Probab=100.00  E-value=4.5e-46  Score=325.35  Aligned_cols=193  Identities=22%  Similarity=0.329  Sum_probs=181.8

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.++     + ++..++++||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus        33 ~Gtt~vgi~~~dgVvlaaD~r~~~-----~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~  106 (233)
T 1yar_A           33 KGSTALGMKFANGVLLISDKKVRS-----R-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSL  106 (233)
T ss_dssp             TSCCEEEEEETTEEEEEECCCCCC-----T-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCcEEEEEECCEEEEEEeccCCc-----c-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            699999999999999999999998     5 6788899999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhcc-----CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384         82 IPVICPVTMIKQTLYKYH-----GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS  156 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~~-----~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms  156 (260)
                      ++++.+++++++++++++     +||++++||||||++| |+||++||+|++.+++++|+|+|+.+|+++||+.|+++||
T Consensus       107 ~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~g-p~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s  185 (233)
T 1yar_A          107 VNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIG-PRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLP  185 (233)
T ss_dssp             CCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSC-EEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred             CCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCC-CEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhccCCC
Confidence            999999999999998653     4999999999999855 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL  202 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~  202 (260)
                      ++||++++++||..++++|. ++++++|++|+++++++++.+.+++
T Consensus       186 ~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~~~~~~~~ei~  230 (233)
T 1yar_A          186 EKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNKYRIYDQEEVK  230 (233)
T ss_dssp             HHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSCCEECCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCCEEECCHHHHH
Confidence            99999999999999999998 6999999999999868887666553

>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...

Probab=100.00  E-value=3.5e-46  Score=328.11  Aligned_cols=191  Identities=15%  Similarity=0.071  Sum_probs=180.1

Q ss_pred             cceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCC
Q psy15384          3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDI   82 (260)
Q Consensus         3 Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i   82 (260)
                      |+|+|||+++||||||+|+|.+.      .++..++++|||+|++||+|++||+.||++.++++++.+++.|++++++++
T Consensus        30 Gtt~vgi~~~dgVvlaad~r~~~------~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~  103 (243)
T 1ryp_A           30 NINSLAVRGKDCTVVISQKKVPD------KLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDM  103 (243)
T ss_dssp             CCCEEEEECSSEEEEEEECCCCC------TTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             CCcEEEEEeCCEEEEEEEecCCc------cccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            99999999999999999999985      788899999999999999999999999999999999999999999999999


Q ss_pred             ChHhHHHHHHHHHH--h-c--cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCC----
Q psy15384         83 PVICPVTMIKQTLY--K-Y--HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE----  153 (260)
Q Consensus        83 ~v~~l~~~l~~~l~--~-~--~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~----  153 (260)
                      +++.++++|+++++  . +  .+||++++||||||++++|+||++||+|++.+++++|+|+|+..++++||+.|++    
T Consensus       104 ~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~~  183 (243)
T 1ryp_A          104 PCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKID  183 (243)
T ss_dssp             CHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCSS
T ss_pred             CHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhhhcccc
Confidence            99999999999983  3 3  3599999999999975569999999999999999999999999999999999999    


Q ss_pred             ---CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccc
Q psy15384        154 ---NLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKV  201 (260)
Q Consensus       154 ---~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~  201 (260)
                         +||++||++++++||..++++| .++.+++|++|+++| ++++.+.++
T Consensus       184 ~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g-~~~l~~~ei  232 (243)
T 1ryp_A          184 HINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDK-FFTLSAENI  232 (243)
T ss_dssp             SCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTE-EEECCHHHH
T ss_pred             cccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCC-eEECCHHHH
Confidence               9999999999999999999999 679999999999999 999865554

>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B

Probab=100.00  E-value=4.3e-46  Score=331.03  Aligned_cols=193  Identities=22%  Similarity=0.282  Sum_probs=181.8

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.+.     |.++.+++++||++|++||+|++||..||++.|+++++.+++.|+++++++
T Consensus        30 ~Gtt~vgi~~~dgVVlaaD~r~~~-----g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~  104 (261)
T 1iru_C           30 HAGTCLGILANDGVLLAAERRNIH-----KLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEP  104 (261)
T ss_dssp             TSCCEEEEBCSSEEEEEECCCCCC-----TTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCcEEEEEeCCEEEEEEecccCC-----cccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            799999999999999999999999     888888889999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhcc-----CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCC-CC
Q psy15384         82 IPVICPVTMIKQTLYKYH-----GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE-NL  155 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~~-----~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~-~m  155 (260)
                      ++++.+++++++++++|+     +||++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|++ +|
T Consensus       105 ~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~m  184 (261)
T 1iru_C          105 IPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEM  184 (261)
T ss_dssp             CCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCCTTCC
T ss_pred             CCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhhccCCC
Confidence            999999999999998763     499999999999975569999999999999999999999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCc---EEEccCc
Q psy15384        156 SEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQ---VSSYKPY  199 (260)
Q Consensus       156 s~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~---~~~l~~~  199 (260)
                      |++||++++++||..++.+|..++++++|++|+++++   ++++.+.
T Consensus       185 s~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~  231 (261)
T 1iru_C          185 TLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQK  231 (261)
T ss_dssp             CHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHH
T ss_pred             CHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHH
Confidence            9999999999999999999999999999999999873   5666333

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...

Probab=100.00  E-value=2.8e-45  Score=314.03  Aligned_cols=188  Identities=20%  Similarity=0.251  Sum_probs=177.8

Q ss_pred             CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCC
Q psy15384          1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHT   80 (260)
Q Consensus         1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~   80 (260)
                      .+|||+|||+++||||||+|+|.+.     |.++.+++++||++|+ ||+|++||..||++.++++++.+++.|++++++
T Consensus         6 ~~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~   79 (204)
T 1ryp_J            6 INGGIVVAMTGKDCVAIACDLRLGS-----QSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEER   79 (204)
T ss_dssp             SSCCEEEEEECSSEEEEEEECCEEE-----TTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCeEEEEEeCCEEEEEEcCCccc-----CCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCC
Confidence            3799999999999999999999999     8898888999999999 999999999999999999999999999999999


Q ss_pred             CCChHhHHHHHHHHHHhcc-CcceeeEEEEEEeC-CCCceEEEEeecceEEee-CEEEEcCChHHHHHHHHhccCCCCCH
Q psy15384         81 DIPVICPVTMIKQTLYKYH-GYLMCAFIIGGIDS-AGGNQLFSIFQHGSSHGH-KFCAMGTGLQPAMGILEAGWKENLSE  157 (260)
Q Consensus        81 ~i~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~-~g~p~Ly~idp~Gs~~~~-~~~aiGsgs~~a~~~Le~~y~~~ms~  157 (260)
                      +++++.+++++++++|.++ +||++++||||||+ +++|+||++||+|++.++ +|+|+|+|+.+|+++||+.|+++||+
T Consensus        80 ~~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~  159 (204)
T 1ryp_J           80 AIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEP  159 (204)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCH
Confidence            9999999999999987654 59999999999996 456999999999999766 67999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEE
Q psy15384        158 KEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSS  195 (260)
Q Consensus       158 eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~  195 (260)
                      +||++++++||..+.++|..++++++|++|+++| ++.
T Consensus       160 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~  196 (204)
T 1ryp_J          160 EDLFETISQALLNAADRDALSGWGAVVYIIKKDE-VVK  196 (204)
T ss_dssp             HHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSC-EEE
T ss_pred             HHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCC-EEE
Confidence            9999999999999999999899999999999999 553

>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...

Probab=100.00  E-value=3.1e-46  Score=328.15  Aligned_cols=191  Identities=23%  Similarity=0.284  Sum_probs=178.4

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.+.     |.++ .++++||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus        25 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~   98 (242)
T 1ryp_E           25 LGSTAIGIATKEGVVLGVEKRATS-----PLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDED   98 (242)
T ss_dssp             TSCCEEEEECSSCEEEEEECCCSS-----TTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCCEEEEEECCEEEEEEeecCCC-----cCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            699999999999999999999999     7666 8899999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----------cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhc
Q psy15384         82 IPVICPVTMIKQTLYKY-----------HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAG  150 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----------~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~  150 (260)
                      ++++.++++++++++.|           .+||++++||||||++++|+||++||+|++.+++++|+|+|+.+++++||+.
T Consensus        99 ~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~  178 (242)
T 1ryp_E           99 INVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNE  178 (242)
T ss_dssp             CCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHHHHHHHHh
Confidence            99999999999988764           5599999999999955569999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCc
Q psy15384        151 WKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPY  199 (260)
Q Consensus       151 y~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~  199 (260)
                      |+++||++||++++++||..++.+ ..++.+++|++|++++.++++.+.
T Consensus       179 ~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~~~~  226 (242)
T 1ryp_E          179 WHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDGFKIYDNE  226 (242)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTEEEECCHH
T ss_pred             hccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCCeEECCHH
Confidence            999999999999999999999998 557999999999999855666433

>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A

Probab=100.00  E-value=7.1e-46  Score=324.12  Aligned_cols=193  Identities=17%  Similarity=0.251  Sum_probs=182.5

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.+.      .++..++++||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus        30 ~Gtt~vgi~~~dgVvlaaD~r~~~------~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~  103 (233)
T 1iru_B           30 GGAPSVGIKAANGVVLATEKKQKS------ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEP  103 (233)
T ss_dssp             TSCCEEEEECSSCEEEEEECCCCC------SSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCcEEEEEeCCEEEEEEEecCCc------cccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            699999999999999999999985      78889999999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhcc-----CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384         82 IPVICPVTMIKQTLYKYH-----GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS  156 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~~-----~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms  156 (260)
                      ++++.+++++++++++|.     +||++++||||||.+| |+||++||+|++.+++++|+|+|+.+|+++||+.|+++||
T Consensus       104 ~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~g-p~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms  182 (233)
T 1iru_B          104 IPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGR-PYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLE  182 (233)
T ss_dssp             CCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSS-EEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred             CCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCC-CeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHHhccCCC
Confidence            999999999999997652     4999999999999655 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccC
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLS  203 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~  203 (260)
                      ++||++++++||..++++| .++++++|++|+++| ++++.+.+++.
T Consensus       183 ~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g-~~~l~~~ei~~  227 (233)
T 1iru_B          183 LEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAG-FRRLTPTEVKD  227 (233)
T ss_dssp             HHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTE-EEECCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCC-EEECCHHHHHH
Confidence            9999999999999999999 579999999999999 99997776643

>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...

Probab=100.00  E-value=2.8e-45  Score=322.44  Aligned_cols=195  Identities=22%  Similarity=0.333  Sum_probs=179.9

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.++     |.++..++++||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus        30 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~  104 (244)
T 1ryp_C           30 HAGTAIGIMASDGIVLAAERKVTS-----TLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNED  104 (244)
T ss_dssp             TSCCEEEEEETTEEEEEEECSSCC-----SSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCcEEEEEeCCEEEEEEeeccCC-----cCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            799999999999999999999999     766668899999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS  156 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms  156 (260)
                      ++++.+++++++++++|     .+||++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|+++||
T Consensus       105 ~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms  184 (244)
T 1ryp_C          105 IPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMK  184 (244)
T ss_dssp             CCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred             CCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhhhcCCC
Confidence            99999999999998654     2499999999999954569999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEE--cCCc---EEEccCccc
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIR--KNGQ---VSSYKPYKV  201 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit--~~g~---~~~l~~~~~  201 (260)
                      ++||++++++||..++++|..++.+++|++|+  +++.   ++++++.++
T Consensus       185 ~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei  234 (244)
T 1ryp_C          185 VDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEI  234 (244)
T ss_dssp             HHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHH
Confidence            99999999999999999955579999999999  8874   666644433

>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*

Probab=100.00  E-value=1.7e-45  Score=324.88  Aligned_cols=192  Identities=18%  Similarity=0.307  Sum_probs=178.7

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.+.     | ++..++++||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus        28 ~Gtt~vgi~~~dgVvlaaD~r~~~-----~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~  101 (248)
T 1iru_D           28 KGSTAVGVRGRDIVVLGVEKKSVA-----K-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDP  101 (248)
T ss_dssp             TSCCEEEECCSSEEEEEECCCCCC-----S-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred             cCCCEEEEEeCCEEEEEEeecccc-----c-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            699999999999999999999999     5 6788899999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCC-
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENL-  155 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~m-  155 (260)
                      +++..++++++++++.|     .+||++++||||||++++|+||++||+|++.+++++|+|+|+..++++||+.|+++| 
T Consensus       102 ~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~m~  181 (248)
T 1iru_D          102 VTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI  181 (248)
T ss_dssp             CCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCCSSTT
T ss_pred             CCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhccccc
Confidence            99999999999999765     259999999999995556999999999999999999999999999999999999999 


Q ss_pred             -CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384        156 -SEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL  202 (260)
Q Consensus       156 -s~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~  202 (260)
                       |++||++++++||..+++   .++++++|++|+++|+++++.+.+++
T Consensus       182 ~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g~~~~l~~~ei~  226 (248)
T 1iru_D          182 ETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQSLKILNPEEIE  226 (248)
T ss_dssp             CSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSSCEECCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCCcEEECCHHHHH
Confidence             999999999999999886   36899999999999868877555543

>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G

Probab=100.00  E-value=4.6e-45  Score=321.51  Aligned_cols=193  Identities=18%  Similarity=0.198  Sum_probs=178.9

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.+.      .++..++++||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus        35 ~Gtt~vgi~~~dgVvlaaD~r~~~------~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~  108 (246)
T 1iru_A           35 GGLTSVAVRGKDCAVIVTQKKVPD------KLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYE  108 (246)
T ss_dssp             TCCEEEEEECSSEEEEEEECCCCC------SSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCCCEEEEEeCCEEEEEEeecCCC------cccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            399999999999999999999985      78899999999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHH---hc--cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCC--C
Q psy15384         82 IPVICPVTMIKQTLY---KY--HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE--N  154 (260)
Q Consensus        82 i~v~~l~~~l~~~l~---~~--~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~--~  154 (260)
                      ++++.++++++++++   ++  .+||++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|++  +
T Consensus       109 ~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~  188 (246)
T 1iru_A          109 IPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD  188 (246)
T ss_dssp             CCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCC
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhcccCC
Confidence            999999999998853   33  3599999999999975569999999999999999999999999999999999999  9


Q ss_pred             CCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCc-EEEccCccc
Q psy15384        155 LSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQ-VSSYKPYKV  201 (260)
Q Consensus       155 ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~-~~~l~~~~~  201 (260)
                      ||++||++++++||..++++| .++.+++|++|+++|. ++++.+.++
T Consensus       189 ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l~~~ei  235 (246)
T 1iru_A          189 WTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILTEAEI  235 (246)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEECCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEECCHHHH
Confidence            999999999999999999999 7899999999999983 566644443

>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...

Probab=100.00  E-value=6.1e-45  Score=319.84  Aligned_cols=192  Identities=15%  Similarity=0.227  Sum_probs=179.6

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.+.     |.++..++++||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus        27 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~  101 (241)
T 1ryp_D           27 RGTCAVGVKGKNCVVLGCERRSTL-----KLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDP  101 (241)
T ss_dssp             TSCCEEEEECSSCEEEEEECCCSS-----CCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCCEEEEEeCCEEEEEEeeccCc-----cCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            699999999999999999999999     788777799999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhcc-----CcceeeEEEEEEeCC-CCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhcc---C
Q psy15384         82 IPVICPVTMIKQTLYKYH-----GYLMCAFIIGGIDSA-GGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGW---K  152 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~~-----~p~g~sliiaG~D~~-g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y---~  152 (260)
                      ++++.+++++++++++++     +||++++||||||++ ++|+||++||+|++.+++++|+|+|+.+|+++||+.|   +
T Consensus       102 ~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~  181 (241)
T 1ryp_D          102 VTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKE  181 (241)
T ss_dssp             CCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTS
T ss_pred             CCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhhhccc
Confidence            999999999999998652     499999999999974 5699999999999999999999999999999999999   9


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccc
Q psy15384        153 ENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKV  201 (260)
Q Consensus       153 ~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~  201 (260)
                      ++||++||++++++||..+++   .++++++|++|+++++++++.+.++
T Consensus       182 ~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~~~~l~~~ei  227 (241)
T 1ryp_D          182 PPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSDIVALSSEEI  227 (241)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTEEEECCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCcEEECCHHHH
Confidence            999999999999999999985   5799999999999876888855544

>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D

Probab=100.00  E-value=3.9e-45  Score=321.06  Aligned_cols=192  Identities=18%  Similarity=0.260  Sum_probs=178.9

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.+.     |.++ .++++||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus        33 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~  106 (241)
T 1iru_E           33 LGSTAIGIQTSEGVCLAVEKRITS-----PLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNET  106 (241)
T ss_dssp             TSCCEEEEEETTEEEEEEECCCCC-----TTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCcEEEEEcCCEEEEEEecccCC-----cCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            699999999999999999999999     7766 8899999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc----------cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhcc
Q psy15384         82 IPVICPVTMIKQTLYKY----------HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGW  151 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~----------~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y  151 (260)
                      ++++.++++++++++.|          .+||++++||||||. ++|+||++||+|++.+++++|+|+|+.+|+++||+.|
T Consensus       107 ~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~  185 (241)
T 1iru_E          107 MTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELY  185 (241)
T ss_dssp             CCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC-CCCEEEEECCCCcEEecceEEECCCcHHHHHHHHHHh
Confidence            99999999999988654          359999999999995 4599999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccc
Q psy15384        152 KENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKV  201 (260)
Q Consensus       152 ~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~  201 (260)
                      +++||++||++++++||..+.++ ..++.+++|++|++++.++++.+.++
T Consensus       186 ~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~l~~~ei  234 (241)
T 1iru_E          186 HKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQNFHMFTKEEL  234 (241)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSCCEECCHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCCeEECCHHHH
Confidence            99999999999999999999999 56799999999999985666654443

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=3.3e-45  Score=326.01  Aligned_cols=194  Identities=23%  Similarity=0.289  Sum_probs=181.6

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.+.     + ++..++++||++|++||+||+||+.||++.|+++++.+++.|++.++++
T Consensus        37 ~Gtt~vgi~~~dgVVlaaD~r~~~-----~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~  110 (264)
T 3h4p_A           37 RGTTAIGIACKDGVVLAVDRRITS-----K-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEE  110 (264)
T ss_dssp             HSCCEEEECCSSEEEEEEECCCCS-----T-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSC
T ss_pred             cCCcEEEEEECCEEEEEEecCccC-----C-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCC
Confidence            699999999999999999999998     5 7788999999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhcc-----CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384         82 IPVICPVTMIKQTLYKYH-----GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS  156 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~~-----~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms  156 (260)
                      +++..++++|+++++.|.     +||++++||||||++| |+||++||+|++.+++++|+|+|+.+|+++||+.|+++||
T Consensus       111 i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~g-p~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms  189 (264)
T 3h4p_A          111 ISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNE-ARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDIT  189 (264)
T ss_dssp             CCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTE-EEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHCCTTCC
T ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCc-CEEEEECCCceEEecCeEEECCCHHHHHHHHHHhccCCCC
Confidence            999999999999987652     4999999999999765 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCC-cEEEccCccccCC
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNG-QVSSYKPYKVLSD  204 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g-~~~~l~~~~~~~~  204 (260)
                      ++||++++++||..++.+  .++++++|++|++++ +++++.+.+++..
T Consensus       190 ~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~~~ei~~~  236 (264)
T 3h4p_A          190 LDEGLELAITALTKANED--IKPENVDVCIITVKDAQFKKIPVEEIKKL  236 (264)
T ss_dssp             SHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECCTTTTGGG
T ss_pred             HHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECCHHHHHHH
Confidence            999999999999999977  589999999999864 5999988877654

>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F

Probab=100.00  E-value=4.4e-45  Score=323.34  Aligned_cols=194  Identities=16%  Similarity=0.188  Sum_probs=179.8

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.+.     |.++ .++++||++|++||+||+||..||++.++++++.+++.|+++++++
T Consensus        32 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~  105 (254)
T 1iru_G           32 NSSTAIGIRCKDGVVFGVEKLVLS-----KLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYN  105 (254)
T ss_dssp             TSCCEEEEECSSBEEEEEEEECSC-----TTBC-TTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCCEEEEEECCEEEEEEecccCC-----CCcC-cCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            699999999999999999999999     7776 4789999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhcc-----CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384         82 IPVICPVTMIKQTLYKYH-----GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS  156 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~~-----~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms  156 (260)
                      ++++.++++++++++.|+     +||++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|+++||
T Consensus       106 ~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms  185 (254)
T 1iru_G          106 IPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMT  185 (254)
T ss_dssp             CCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCGGGCC
T ss_pred             CCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhccCCCC
Confidence            999999999999998763     599999999999955569999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcC--CcEEEccCccc
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKN--GQVSSYKPYKV  201 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~--g~~~~l~~~~~  201 (260)
                      ++||++++++||+.++.+|..++.+++|++|+++  |+++++.+.++
T Consensus       186 ~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i  232 (254)
T 1iru_G          186 CRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIR  232 (254)
T ss_dssp             HHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHH
Confidence            9999999999999998888777889999999987  44777744443

>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...

Probab=100.00  E-value=1.7e-44  Score=317.84  Aligned_cols=192  Identities=22%  Similarity=0.246  Sum_probs=178.8

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.++     |.++.++ .+||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus        29 ~Gtt~vgi~~~dgVvlaaD~r~~~-----g~~~~~~-~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~  102 (244)
T 1ryp_G           29 NGTTSIGIKCNDGVVFAVEKLITS-----KLLVPQK-NVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTP  102 (244)
T ss_dssp             TSCCEEEEEETTEEEEEEEEECCC-----TTBCTTT-SCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCCCEEEEEECCEEEEEEecccCC-----CCccccc-cCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            699999999999999999999999     7776554 5999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhc---cCC
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAG---WKE  153 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~---y~~  153 (260)
                      +++..++++++++++.|     .+||++++||||||++| |+||++||+|++.+++++|+|+|+.+|+++||+.   |++
T Consensus       103 ~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~g-p~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~  181 (244)
T 1ryp_G          103 IPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNG-AHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPE  181 (244)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTE-EEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCc-CEEEEECCCCCEEEeeEEEECCChHHHHHHHHHhHhhcCC
Confidence            99999999999998654     36999999999999755 9999999999999999999999999999999997   999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEc---CCcEEEccCccc
Q psy15384        154 NLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRK---NGQVSSYKPYKV  201 (260)
Q Consensus       154 ~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~---~g~~~~l~~~~~  201 (260)
                      +||++||++++++||..++++|..++.+++|++|++   +| ++.+.|.++
T Consensus       182 ~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g-~~~~~~~~~  231 (244)
T 1ryp_G          182 GLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNG-LHKFVKGDL  231 (244)
T ss_dssp             CCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTT-SEEECCTHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCC-eeeeChHHH
Confidence            999999999999999999999998899999999998   67 777666544

>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...

Probab=100.00  E-value=1e-44  Score=316.96  Aligned_cols=191  Identities=20%  Similarity=0.166  Sum_probs=178.1

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.+.     |. .  ++.+||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus        30 ~Gtt~vgi~~~dgVvlaaD~r~~~-----~l-~--~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~  101 (233)
T 1ryp_F           30 QGSVTVGLRSNTHAVLVALKRNAD-----EL-S--SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRK  101 (233)
T ss_dssp             TSCCEEEEECSSEEEEEEECCCSS-----TT-B--CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             cCCCEEEEEcCCEEEEEEEecccc-----cc-c--cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            699999999999999999999998     53 2  478999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCC--C
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE--N  154 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~--~  154 (260)
                      ++++.++++++++++.|     .+||++++||||||++| |+||++||+|++.+++++|+|+|+..|+++||+.|++  +
T Consensus       102 ~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~g-p~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~  180 (233)
T 1ryp_F          102 LAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSG-AHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIK  180 (233)
T ss_dssp             CCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTE-EEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCc-CEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHhccccc
Confidence            99999999999998643     35999999999999865 9999999999999999999999999999999999998  9


Q ss_pred             C--CHHHHHHHHHHHHHHHHhhc-CCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384        155 L--SEKEGLTLMVDAIKAGILYD-LGSGSKVDVTIIRKNGQVSSYKPYKVL  202 (260)
Q Consensus       155 m--s~eeai~la~~al~~~~~~D-~~sg~~iev~vit~~g~~~~l~~~~~~  202 (260)
                      |  |++||++++++||..++ +| ..++.+++|++|+++++++++.+.+++
T Consensus       181 m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~~l~~~ei~  230 (233)
T 1ryp_F          181 IDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDGEAVA  230 (233)
T ss_dssp             CCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEEEEEGGGGG
T ss_pred             cCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEEECCHHHHH
Confidence            9  99999999999999999 88 578999999999999559999877764

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4

Probab=100.00  E-value=1.9e-44  Score=315.83  Aligned_cols=190  Identities=19%  Similarity=0.196  Sum_probs=179.3

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+++||||||+|+|.++     |+++..++++||++|++||+|++||..||++.|+++++.+++.|+++++++++
T Consensus         1 tT~vgi~~~dgVVlaaD~r~~~-----g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   75 (235)
T 1q5q_H            1 TTIVALTYKGGVLLAGDRRATQ-----GNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLT   75 (235)
T ss_dssp             CCEEEEECSSCEEEEECCCEEE-----TTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CeEEEEEECCEEEEEECCCCCc-----CCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCC
Confidence            7999999999999999999999     99999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhc----cCcceeeEEEEEEeCCCC-----ceEEEEeecceEEee--CEEEEcCChHHHHHHHHhccC
Q psy15384         84 VICPVTMIKQTLYKY----HGYLMCAFIIGGIDSAGG-----NQLFSIFQHGSSHGH--KFCAMGTGLQPAMGILEAGWK  152 (260)
Q Consensus        84 v~~l~~~l~~~l~~~----~~p~g~sliiaG~D~~g~-----p~Ly~idp~Gs~~~~--~~~aiGsgs~~a~~~Le~~y~  152 (260)
                      ++.++++|+++++++    .+||++++||||||++++     |+||++||+|++.++  +++|+|+|+.+|+++||+.|+
T Consensus        76 v~~la~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~  155 (235)
T 1q5q_H           76 FDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS  155 (235)
T ss_dssp             HHHHHHHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcC
Confidence            999999999998864    469999999999998766     999999999999999  999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCCCCCc--E-----EEEEEEcCCcEEEccCc
Q psy15384        153 ENLSEKEGLTLMVDAIKAGILYDLGSGSK--V-----DVTIIRKNGQVSSYKPY  199 (260)
Q Consensus       153 ~~ms~eeai~la~~al~~~~~~D~~sg~~--i-----ev~vit~~g~~~~l~~~  199 (260)
                      ++||++||++++++||..++++|..+++.  +     +|++|+++| ++++.+.
T Consensus       156 ~~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g-~~~l~~~  208 (235)
T 1q5q_H          156 PDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG-AVHVSEE  208 (235)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE-EEECCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCC-eEEeCHH
Confidence            99999999999999999999999887652  3     999999998 9887443

>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*

Probab=100.00  E-value=3.4e-44  Score=316.11  Aligned_cols=191  Identities=20%  Similarity=0.259  Sum_probs=177.6

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.+.     + ++..++++||++|++||+|++||..||++.++++++.+++.|+++++++
T Consensus        33 ~Gtt~vgi~~~dgVvlaaD~r~~~-----~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~  106 (246)
T 1j2p_A           33 RGATAIGIKCKEGVILIADKRVGS-----K-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIP  106 (246)
T ss_dssp             TSCCEEEEEETTEEEEEEECCCSC-----T-TBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred             cCCcEEEEEECCEEEEEEeccCCc-----c-ccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            699999999999999999999998     4 5668899999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhcc-----CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384         82 IPVICPVTMIKQTLYKYH-----GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS  156 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~~-----~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms  156 (260)
                      ++++.++++++++++.|.     +||++++|||||| +| |+||++||+|++.+++++|+|+|+.+|+++||+.|+++||
T Consensus       107 ~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~g-p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms  184 (246)
T 1j2p_A          107 ITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EV-PKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLS  184 (246)
T ss_dssp             CCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SS-EEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred             CCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CC-CEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHhccCCC
Confidence            999999999999987552     4999999999999 55 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEE-cCCcEEEccCccc
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIR-KNGQVSSYKPYKV  201 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit-~~g~~~~l~~~~~  201 (260)
                      ++||++++++||..++++ ..++.+++|++|+ ++++++++.+.++
T Consensus       185 ~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~l~~~ei  229 (246)
T 1j2p_A          185 FDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFKEVSPEEL  229 (246)
T ss_dssp             HHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCEECCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceEECCHHHH
Confidence            999999999999999998 6789999999999 6544888855544

>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E

Probab=100.00  E-value=2.5e-44  Score=320.08  Aligned_cols=192  Identities=19%  Similarity=0.170  Sum_probs=178.4

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.+.     |. .  ++++||++|++||+|++||..||++.|+++++.+++.|+++++++
T Consensus        31 ~Gtt~vgi~~~dgVVlaaD~r~~~-----gl-~--~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~  102 (263)
T 1iru_F           31 QGSATVGLKSKTHAVLVALKRAQS-----EL-A--AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRP  102 (263)
T ss_dssp             HSCCEEEEECSSEEEEEEECCCSS-----TT-B--CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCcEEEEEeCCEEEEEEeccccc-----cc-c--cchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            599999999999999999999998     53 2  478999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCC--C
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE--N  154 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~--~  154 (260)
                      ++++.+++++++++++|     .+||++++||||||++| |+||++||+|++.+++++|+|+|+.+++++||+.|++  +
T Consensus       103 i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~g-p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~  181 (263)
T 1iru_F          103 LPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMG-PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME  181 (263)
T ss_dssp             CCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTE-EEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCC-CEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHhcccCC
Confidence            99999999999998754     35999999999999865 9999999999999999999999999999999999998  9


Q ss_pred             CCHHHHHHHHHHHHHHHHhhc-CCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384        155 LSEKEGLTLMVDAIKAGILYD-LGSGSKVDVTIIRKNGQVSSYKPYKVL  202 (260)
Q Consensus       155 ms~eeai~la~~al~~~~~~D-~~sg~~iev~vit~~g~~~~l~~~~~~  202 (260)
                      ||++||++++++||..++++| ..++.+++|++|+++++++++.+.+++
T Consensus       182 ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~~ei~  230 (263)
T 1iru_F          182 CNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVS  230 (263)
T ss_dssp             CCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGH
T ss_pred             CCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCHHHHH
Confidence            999999999999999999999 478999999999999549988666553

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H

Probab=100.00  E-value=4.7e-44  Score=322.92  Aligned_cols=192  Identities=19%  Similarity=0.199  Sum_probs=181.3

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.++     |+++..++++|||+|++||+|++||+.+|++.++++++.+++.|+++++++
T Consensus        64 ~GtTiVgIk~kdGVVlAaD~r~t~-----G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~  138 (294)
T 1q5r_H           64 HGTTIVALTYKGGVLLAGDRRATQ-----GNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVP  138 (294)
T ss_dssp             BCCCEEEEECSSCEEEEECCCEEE-----TTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCceEEEEEECCEEEEEEcCcccc-----CceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCC
Confidence            699999999999999999999999     999999999999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc----cCcceeeEEEEEEeCCCC-----ceEEEEeecceEEee--CEEEEcCChHHHHHHHHhc
Q psy15384         82 IPVICPVTMIKQTLYKY----HGYLMCAFIIGGIDSAGG-----NQLFSIFQHGSSHGH--KFCAMGTGLQPAMGILEAG  150 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~----~~p~g~sliiaG~D~~g~-----p~Ly~idp~Gs~~~~--~~~aiGsgs~~a~~~Le~~  150 (260)
                      ++++.++++|+++++++    .+||++++||||||++++     |+||++||+|++.++  +|+|+|+|+.+|+++||+.
T Consensus       139 isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~  218 (294)
T 1q5r_H          139 LTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKI  218 (294)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHh
Confidence            99999999999998865    369999999999998756     999999999999999  9999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhcCCCCCc--E-----EEEEEEcCCcEEEccCc
Q psy15384        151 WKENLSEKEGLTLMVDAIKAGILYDLGSGSK--V-----DVTIIRKNGQVSSYKPY  199 (260)
Q Consensus       151 y~~~ms~eeai~la~~al~~~~~~D~~sg~~--i-----ev~vit~~g~~~~l~~~  199 (260)
                      |+++||++||++++++||..++++|..+++.  +     +|++|+++| ++++.+.
T Consensus       219 y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g-~~~l~~~  273 (294)
T 1q5r_H          219 YSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG-AVHVSEE  273 (294)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE-EEECCHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCC-EEEcCHH
Confidence            9999999999999999999999999887653  6     999999998 9887433

>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...

Probab=100.00  E-value=1.8e-43  Score=312.21  Aligned_cols=183  Identities=19%  Similarity=0.290  Sum_probs=171.6

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhh-cCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLEC-QFPKAHT   80 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~-~~~~~~~   80 (260)
                      +|||+|||+++||||||+|+|.+.      .++..++++||++|++||+|++||..||++.++++++.+++. |+..++.
T Consensus        30 ~Gtt~vgi~~~dgVvlaaD~r~~~------~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~  103 (250)
T 1ryp_B           30 QGVTSLGIKATNGVVIATEKKSSS------PLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGE  103 (250)
T ss_dssp             TSCCEEEEEETTEEEEEEECCCSC------SSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSS
T ss_pred             cCCcEEEEEECCEEEEEEeccCCC------ccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            699999999999999999999874      889999999999999999999999999999999999999999 9888999


Q ss_pred             CCChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCC
Q psy15384         81 DIPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENL  155 (260)
Q Consensus        81 ~i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~m  155 (260)
                      +++++.+++.+++++.++     .+||++++||||||++++|+||++||+|++.+++++|+|+|+.+|+++||+.|+++|
T Consensus       104 ~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~m  183 (250)
T 1ryp_B          104 YPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDEL  183 (250)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHHhccCC
Confidence            999999988888876543     259999999999998666999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCC
Q psy15384        156 SEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNG  191 (260)
Q Consensus       156 s~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g  191 (260)
                      |++||++++++||..+++++. ++++++|++|++++
T Consensus       184 s~eea~~la~~al~~~~~~~~-sg~~i~v~vi~~~~  218 (250)
T 1ryp_B          184 ELEDAIHIALLTLKESVEGEF-NGDTIELAIIGDEN  218 (250)
T ss_dssp             CHHHHHHHHHHHHHHHCCSCC-STTTEEEEEECSCC
T ss_pred             CHHHHHHHHHHHHHHHhcccc-CCCCEEEEEEEccc
Confidence            999999999999999998865 79999999999985

>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D

Probab=100.00  E-value=2.3e-43  Score=311.51  Aligned_cols=181  Identities=19%  Similarity=0.250  Sum_probs=162.0

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCC-C
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAH-T   80 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~   80 (260)
                      +|+|+|||+++||||||+|+|..             +++|||+|++||+||+||+++|++.|.+.++.+++.|++.++ .
T Consensus        26 ~GtT~vgi~~kdgVVlaadkr~~-------------~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~   92 (248)
T 3mi0_A           26 RAKSVVALAYAGGVLFVAENPSR-------------SLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRR   92 (248)
T ss_dssp             TSCCEEEEEETTEEEEEEECCCS-------------SSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred             CCCcEEEEEeCCEEEEEEeCCCC-------------CCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            69999999999999999999943             489999999999999999999999999999999999999999 8


Q ss_pred             CCChHhHHHHHHHH----HHhccCcceeeEEEEEEeC---CCCceEEEEeecceEEe-eCEEEEcCChHHHHHHHHhccC
Q psy15384         81 DIPVICPVTMIKQT----LYKYHGYLMCAFIIGGIDS---AGGNQLFSIFQHGSSHG-HKFCAMGTGLQPAMGILEAGWK  152 (260)
Q Consensus        81 ~i~v~~l~~~l~~~----l~~~~~p~g~sliiaG~D~---~g~p~Ly~idp~Gs~~~-~~~~aiGsgs~~a~~~Le~~y~  152 (260)
                      +++++.+++++++.    +++..+||++++||||||+   +++|+||++||+|++.. |+++|+|+|+..|+++||++|+
T Consensus        93 ~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~  172 (248)
T 3mi0_A           93 DVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYA  172 (248)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcC
Confidence            99999999999854    3454679999999999997   35699999999999995 9999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHH-------hhcCCCCCcEEEEEEEcCCc---EEEc
Q psy15384        153 ENLSEKEGLTLMVDAIKAGI-------LYDLGSGSKVDVTIIRKNGQ---VSSY  196 (260)
Q Consensus       153 ~~ms~eeai~la~~al~~~~-------~~D~~sg~~iev~vit~~g~---~~~l  196 (260)
                      ++||++||++++++||..++       .++. ++++++|+||+++++   ++++
T Consensus       173 ~~mt~eeai~la~~aL~~~~~~~~~~~~~~~-~~~~iev~vv~~~g~~~~f~~l  225 (248)
T 3mi0_A          173 ENASLTDALRIAVAALRAGSADTSGGDQPTL-GVASLEVAVLDANRPRRAFRRI  225 (248)
T ss_dssp             TTCCHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTSSSCCEEEC
T ss_pred             CCCCHHHHHHHHHHHHHHHHhhcccCccccc-CCCcEEEEEEECCCCcccEEEC
Confidence            99999999999999999999       5664 589999999999872   5555

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H

Probab=100.00  E-value=1.1e-43  Score=320.05  Aligned_cols=194  Identities=20%  Similarity=0.246  Sum_probs=164.6

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.++     |.++.+++++|||+|++||+|++||.+||++.++++++.+++.|++.++.+
T Consensus        56 ~GtTiVgi~~kdGVVlAaD~r~t~-----g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~  130 (291)
T 2jay_A           56 HGTTIVALKYPGGVVMAGDRRSTQ-----GNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVP  130 (291)
T ss_dssp             --CCEEEEEETTEEEEEECCC-------------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCcEEEEEEECCEEEEEECCCccC-----CCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCC
Confidence            799999999999999999999999     889999999999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhcc----CcceeeEEEEEEeCCCC-----ceEEEEeecceEE--eeCEEEEcCChHHHHHHHHhc
Q psy15384         82 IPVICPVTMIKQTLYKYH----GYLMCAFIIGGIDSAGG-----NQLFSIFQHGSSH--GHKFCAMGTGLQPAMGILEAG  150 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~~----~p~g~sliiaG~D~~g~-----p~Ly~idp~Gs~~--~~~~~aiGsgs~~a~~~Le~~  150 (260)
                      ++++.+++++++++++++    +||++++||||||++++     |+||++||+|++.  +++|+|+|+|+.+|+++||+.
T Consensus       131 i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~  210 (291)
T 2jay_A          131 LTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKL  210 (291)
T ss_dssp             CCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHh
Confidence            999999999999998874    38999999999998766     9999999999999  899999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhcCCCCCc--E-----EEEEEEcCCcEEEccCccc
Q psy15384        151 WKENLSEKEGLTLMVDAIKAGILYDLGSGSK--V-----DVTIIRKNGQVSSYKPYKV  201 (260)
Q Consensus       151 y~~~ms~eeai~la~~al~~~~~~D~~sg~~--i-----ev~vit~~g~~~~l~~~~~  201 (260)
                      |+++||++||++++++||..++++|..+++.  +     +|++|+++| ++++.+.++
T Consensus       211 ~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg-~~~l~~~ei  267 (291)
T 2jay_A          211 YSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADG-AVDVPESRI  267 (291)
T ss_dssp             GGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTE-EEECCHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCC-eEEcCHHHH
Confidence            9999999999999999999999999887653  2     699999998 998855444

>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*

Probab=100.00  E-value=2.4e-43  Score=317.47  Aligned_cols=181  Identities=23%  Similarity=0.237  Sum_probs=172.6

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+++||||||+|+|.++     |.++.. +.+|||+|++||+||+||+.||++.|+++++.+++.|+++++++
T Consensus        33 ~GtT~Vgik~kdGVVlAaD~r~t~-----gl~~~~-~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~  106 (288)
T 3nzj_F           33 NGTTSIGIKCNDGVVFAVEKLITS-----KLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTP  106 (288)
T ss_dssp             TSCCEEEEEETTEEEEEEEEEECC-----TTBCTT-CSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCcEEEEEECCEEEEEEcCCccc-----CCcccc-ccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            799999999999999999999999     766554 78999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhc---cCC
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAG---WKE  153 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~---y~~  153 (260)
                      +++..++++|+++++.|     .+||++++||||||++| |+||++||+|++.+++++|+|+|+..++++||+.   |++
T Consensus       107 i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~G-p~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~~~~  185 (288)
T 3nzj_F          107 IPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNG-AHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPE  185 (288)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTE-EEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCC-CEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHhccccCC
Confidence            99999999999998765     35999999999999866 9999999999999999999999999999999999   999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEc
Q psy15384        154 NLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRK  189 (260)
Q Consensus       154 ~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~  189 (260)
                      +||++||++++++||..++.+|..++.+++|++|++
T Consensus       186 ~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~  221 (288)
T 3nzj_F          186 GLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSL  221 (288)
T ss_dssp             CCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEET
T ss_pred             CCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEe
Confidence            999999999999999999999988889999999998

>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A

Probab=100.00  E-value=7.3e-43  Score=310.07  Aligned_cols=187  Identities=16%  Similarity=0.251  Sum_probs=167.1

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCC-C
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAH-T   80 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~   80 (260)
                      +|||+|||+++||||||+|+|..             +++|||+|++||+||+||..||++.|+++++.+++.|++.++ +
T Consensus        26 ~Gtt~vgi~~~dgVVlaaD~rs~-------------~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~   92 (259)
T 1q5q_A           26 RGRSVVVLTFRDGVLFVAENPST-------------ALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRR   92 (259)
T ss_dssp             TSCCEEEEECSSEEEEEECCSCS-------------SSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred             cCCcEEEEEeCCEEEEEEecCCC-------------CcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            69999999999999999999832             489999999999999999999999999999999999988887 4


Q ss_pred             CCChHhHHHHHHHHH---Hhc-cCcceeeEEEEEEe--C-CCCceEEEEeecceEE-eeCEEEEcCChHHHHHHHHhccC
Q psy15384         81 DIPVICPVTMIKQTL---YKY-HGYLMCAFIIGGID--S-AGGNQLFSIFQHGSSH-GHKFCAMGTGLQPAMGILEAGWK  152 (260)
Q Consensus        81 ~i~v~~l~~~l~~~l---~~~-~~p~g~sliiaG~D--~-~g~p~Ly~idp~Gs~~-~~~~~aiGsgs~~a~~~Le~~y~  152 (260)
                      ++++..++++|++++   |.+ .+||++++||||||  + +++|+||++||+|++. +++++|+|+|+..|+++||++|+
T Consensus        93 ~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~  172 (259)
T 1q5q_A           93 DVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYR  172 (259)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhcc
Confidence            999999999999953   333 46999999999999  3 4459999999999999 89999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHH-----hhcCCCCCcEEEEEEEcCC---cEEEccCcccc
Q psy15384        153 ENLSEKEGLTLMVDAIKAGI-----LYDLGSGSKVDVTIIRKNG---QVSSYKPYKVL  202 (260)
Q Consensus       153 ~~ms~eeai~la~~al~~~~-----~~D~~sg~~iev~vit~~g---~~~~l~~~~~~  202 (260)
                      ++||++||++++++||..++     ++|. ++.+++|++|++++   +++++.+.+++
T Consensus       173 ~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~~~~~~~~l~~~ei~  229 (259)
T 1q5q_A          173 ADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSRPRRAFRRIAGTALE  229 (259)
T ss_dssp             TTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTSSSCCEEECCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCCCcCCeEECCHHHHH
Confidence            99999999999999999999     8999 89999999999994   48888655554

>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A

Probab=100.00  E-value=8.4e-38  Score=263.33  Aligned_cols=168  Identities=19%  Similarity=0.165  Sum_probs=152.8

Q ss_pred             CCcceEEEEEeCCEEEEEEeCCCcccCCCCCce-eeccCcCceEEe-cCeEEEEecCChhHHHHHHHHHHHHHhhcCCCC
Q psy15384          1 MTGTTICGLLYEDGVILGADTRATMKDASGSSI-LIDHNCSKINRL-SEKIYCCGAGSAADMKRLSGLVEANLECQFPKA   78 (260)
Q Consensus         1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~l-i~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~   78 (260)
                      ++|||+|||+++||||||+|+|.+.     |.+ +.+++++||++| ++|++||+||.+||++.+.++++.+++.|+   
T Consensus         3 ~~GtTivgi~~~dgVvlaaD~r~t~-----g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---   74 (180)
T 2z3b_A            3 FHATTIFAVQHKGRSAMSGDGQVTF-----GQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---   74 (180)
T ss_dssp             BCCCCEEEEEETTEEEEEECCCEEE-----TTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---
T ss_pred             CCCeEEEEEEECCEEEEEECCCccC-----CCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---
Confidence            4799999999999999999999999     888 999999999999 999999999999999999999999999998   


Q ss_pred             CCCCChHhHHHHHHHHHHhcc--CcceeeEEEEEEeCCCCceEEEEeecceEEee--CEEEEcCChHHHHHHHHhccCC-
Q psy15384         79 HTDIPVICPVTMIKQTLYKYH--GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGH--KFCAMGTGLQPAMGILEAGWKE-  153 (260)
Q Consensus        79 ~~~i~v~~l~~~l~~~l~~~~--~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~--~~~aiGsgs~~a~~~Le~~y~~-  153 (260)
                      +  ..+..+ ..|++.+++++  +||++++|||  |  + |+||++||+|++.++  +++|+|+|+.+|+++||+.|++ 
T Consensus        75 g--~~~~~~-~~l~~~~~~~~~~rp~~~~~lva--d--~-p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~  146 (180)
T 2z3b_A           75 G--NLKRAA-VELAKEWRSDKVLRKLEAMLIVM--N--Q-DTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHA  146 (180)
T ss_dssp             T--CHHHHH-HHHHHHHHHCTTGGGCCCCEEEE--C--S-SCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHH
T ss_pred             C--ChHHHH-HHHHHHHHhhhCcCcceEEEEEE--c--C-CeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhcc
Confidence            3  233333 35677777654  6999999999  4  4 999999999999984  9999999999999999999998 


Q ss_pred             --CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384        154 --NLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTII  187 (260)
Q Consensus       154 --~ms~eeai~la~~al~~~~~~D~~sg~~iev~vi  187 (260)
                        +||.||   ++.+||+.+.+||..++++++|++|
T Consensus       147 ~~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i  179 (180)
T 2z3b_A          147 GESMSASE---IARAALETAGEICVYTNDQIILEEL  179 (180)
T ss_dssp             GGGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred             CCCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence              999999   5789999999999999999999998

>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A

Probab=100.00  E-value=4.4e-37  Score=257.34  Aligned_cols=166  Identities=19%  Similarity=0.207  Sum_probs=152.4

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEe-cCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRL-SEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDI   82 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i   82 (260)
                      ||+|||+++||||||+|+|.+.     |.++.+++++||++| ++|++|++||.+||++.+.++++.+++.|++      
T Consensus         1 tT~vgi~~~dgVvlaaD~r~t~-----g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------   69 (174)
T 1g3k_A            1 TTIVSVRRNGQVVVGGDGQVSL-----GNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------   69 (174)
T ss_dssp             CCEEEEEETTEEEEEECCCEEE-----TTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------
T ss_pred             CeEEEEEECCEEEEEECCCCcc-----CCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------
Confidence            7999999999999999999999     889999999999999 9999999999999999999999999999986      


Q ss_pred             ChHhHHHHHHHHHHhccC--cceeeEEEEEEeCCCCceEEEEeecceEEeeC---EEEEcCChHHHHHHHHhccC-CCCC
Q psy15384         83 PVICPVTMIKQTLYKYHG--YLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHK---FCAMGTGLQPAMGILEAGWK-ENLS  156 (260)
Q Consensus        83 ~v~~l~~~l~~~l~~~~~--p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~---~~aiGsgs~~a~~~Le~~y~-~~ms  156 (260)
                      ++...+..|++.+++++.  |+  +.+++|+|  + |+||++||+|++.+++   ++|+|+|+.+|+++||+.|+ ++||
T Consensus        70 ~~~~~~~~l~~~~~~~~~~r~~--~~~l~g~d--~-p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt  144 (174)
T 1g3k_A           70 HLLKSAVELAKDWRTDRALRKL--EAMLIVAD--E-KESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELS  144 (174)
T ss_dssp             CHHHHHHHHHHHHHHSTTGGGC--CCEEEEEC--S-SCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCC
T ss_pred             cHHHHHHHHHHHHHhccCcCcc--eEEEEEEC--C-CEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCC
Confidence            445667778888887643  65  56777887  4 9999999999999988   99999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEE
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIR  188 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit  188 (260)
                      .+   +++++||+.+.++|..++++++|++|+
T Consensus       145 ~~---~l~~~al~~a~~rd~~sg~~i~v~~i~  173 (174)
T 1g3k_A          145 AH---EIVEKSLRIAGDICVFTNTNFTIEELP  173 (174)
T ss_dssp             HH---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred             HH---HHHHHHHHHHHHhccccCCceEEEEec
Confidence            55   799999999999999999999999985

>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4

Probab=100.00  E-value=5.9e-37  Score=255.75  Aligned_cols=165  Identities=21%  Similarity=0.217  Sum_probs=150.6

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEe-cCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRL-SEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDI   82 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i   82 (260)
                      ||+|||+++||||||+|+|.+.     |.++.+++++||++| ++|++|++||..||++.+.++++.+++.|+++     
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~-----g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----   70 (171)
T 1m4y_A            1 TTILVVRRNGQTVMGGDGQVTF-----GSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----   70 (171)
T ss_dssp             CCEEEEEETTEEEEEECCCEEE-----TTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred             CeEEEEEECCEEEEEECCCccc-----CCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----
Confidence            7999999999999999999999     899999999999999 99999999999999999999999999999865     


Q ss_pred             ChHhHHHHHHHHHHhcc--CcceeeEEEEEEeCCCCceEEEEeecceEEeeC--EEEEcCChHHHHHHHHhccC-CCCCH
Q psy15384         83 PVICPVTMIKQTLYKYH--GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHK--FCAMGTGLQPAMGILEAGWK-ENLSE  157 (260)
Q Consensus        83 ~v~~l~~~l~~~l~~~~--~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~--~~aiGsgs~~a~~~Le~~y~-~~ms~  157 (260)
                      .++.++++ .+.+++++  +||++++|+|  |  | |+||++||+|++.+++  ++|+|+|+.+|+++||+.|+ ++||.
T Consensus        71 ~~~~~~~l-~~~~~~~~~~~~~~~~~lv~--D--~-p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~  144 (171)
T 1m4y_A           71 LTKAAVEL-AKDWRTDRVLRRLEALLLVA--D--K-ENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA  144 (171)
T ss_dssp             HHHHHHHH-HHHHHHCTTGGGCCCEEEEE--C--S-SCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH
T ss_pred             HHHHHHHH-HHHHHHhCCCCceEEEEEEE--c--C-CEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH
Confidence            25666665 44666654  4799999998  6  4 9999999999999998  99999999999999999999 99997


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384        158 KEGLTLMVDAIKAGILYDLGSGSKVDVTII  187 (260)
Q Consensus       158 eeai~la~~al~~~~~~D~~sg~~iev~vi  187 (260)
                         ++++++||+.+++||..++++++|+++
T Consensus       145 ---~~l~~~al~~a~~rd~~sg~~i~v~~~  171 (171)
T 1m4y_A          145 ---REIVEKAMTIAGEICIYTNQNIVIEEV  171 (171)
T ss_dssp             ---HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred             ---HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence               678999999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	260
d1rypi_	222	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	2e-47
d1irui_	220	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	3e-44
d1iruh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	2e-40
d1ryph_	205	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	2e-37
d1rypl_	212	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	7e-37
d1irue_	234	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	6e-36
d1ryp2_	233	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	4e-35
d1irul_	201	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	2e-34
d1j2qh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	2e-33
d1rypk_	198	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	1e-32
d1ryp1_	222	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	2e-32
d1irud_	243	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	2e-32
d1iruc_	250	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	7e-32
d1rypb_	250	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	1e-31
d1yara1	221	d.153.1.4 (A:13-233) Proteasome alpha subunit (non	2e-31
d1rypc_	244	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	2e-31
d1iru2_	217	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	2e-31
d1rypj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	4e-31
d1rype_	242	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	5e-31
d1j2pa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	8e-31
d1irug_	245	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	1e-30
d1yarh1	203	d.153.1.4 (H:1-203) Proteasome beta subunit (catal	1e-30
d1rypa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	2e-30
d1iruj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	3e-30
d1rypg_	244	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	4e-30
d1q5qh_	224	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	4e-29
d1iruk_	199	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	5e-29
d1q5qa_	227	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	9e-28
d1iru1_	213	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	1e-27
d1iruf_	238	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	6e-27
d1rypd_	241	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	1e-26
d1rypf_	233	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	2e-25
d1irua_	244	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	7e-25
d1irub_	233	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	7e-24
d2z3ba1	180	d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus	1e-23
d1m4ya_	171	d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga ma	1e-20
d1g3ka_	173	d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus i	4e-20

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  155 bits (392), Expect = 2e-47
 Identities = 85/226 (37%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI G+ + +GV++ ADTR+T        I+ D NC+K++R+S KI+C GAG+AAD + +
Sbjct: 1   TTIVGVKFNNGVVIAADTRSTQ-----GPIVADKNCAKLHRISPKIWCAGAGTAADTEAV 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
           + L+ +N+E        +  V+  + M+KQ L+KY G++    I+ G+D   G+ LFSI 
Sbjct: 56  TQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDP-TGSHLFSIH 114

Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
            HGS+    + ++G+G   AM +LE+ WK++L+++E + L  DAI+AGI  DLGSGS VD
Sbjct: 115 AHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVD 174

Query: 184 VTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPI 229
           V ++         + Y   + R  K      P GTT VL   ++ I
Sbjct: 175 VCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTAVLKESIVNI 220

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  147 bits (371), Expect = 3e-44
 Identities = 89/227 (39%), Positives = 136/227 (59%), Gaps = 7/227 (3%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI G++Y+DG++LGADTRAT        ++ D NCSKI+ +S  IYCCGAG+AAD    
Sbjct: 1   TTIAGVVYKDGIVLGADTRATEG-----MVVADKNCSKIHFISPNIYCCGAGTAADTDMT 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
           + L+ +NLE           V+    M+KQ L++Y GY+  A ++GG+D   G  L+SI+
Sbjct: 56  TQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVDV-TGPHLYSIY 114

Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
            HGS+    +  MG+G   AM + E  ++ ++ E+E   L+ +AI AGI  DLGSGS +D
Sbjct: 115 PHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNID 174

Query: 184 VTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE 230
           + +I KN  +   +PY V + +  +  +     GTT VL+ ++ P+E
Sbjct: 175 LCVISKNK-LDFLRPYTVPNKKGTRLGRYRCEKGTTAVLTEKITPLE 220

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  136 bits (343), Expect = 2e-40
 Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 5/188 (2%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI  + ++ GV+LGAD+R T       S + +    K+  + ++I+CC +GSAAD + +
Sbjct: 1   TTIMAVQFDGGVVLGADSRTTTG-----SYIANRVTDKLTPIHDRIFCCRSGSAADTQAV 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
           +  V   L     + +    V    ++ K+  Y+Y   LM   II G D   G Q++S+ 
Sbjct: 56  ADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVP 115

Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
             G      F   G+G     G ++A ++E ++++E L    +A+   +  D  SG  + 
Sbjct: 116 MGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIR 175

Query: 184 VTIIRKNG 191
           +  I ++G
Sbjct: 176 LAAIAESG 183

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  128 bits (323), Expect = 2e-37
 Identities = 48/190 (25%), Positives = 95/190 (50%), Gaps = 6/190 (3%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
            G +I  + ++DGVILGAD+R T       + + +    K+ R+ +KI+CC +GSAAD +
Sbjct: 8   LGASIMAVTFKDGVILGADSRTTT-----GAYIANRVTDKLTRVHDKIWCCRSGSAADTQ 62

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
            ++ +V+ +LE  +   +         ++ K+  Y+    L    I+ G D     ++++
Sbjct: 63  AIADIVQYHLE-LYTSQYGTPSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYT 121

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
           I   GS H   +   G+G     G  +  ++EN+S++E +  +  ++   I +D  SG  
Sbjct: 122 IPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGV 181

Query: 182 VDVTIIRKNG 191
           + + ++   G
Sbjct: 182 IRMVVLTAAG 191

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  127 bits (320), Expect = 7e-37
 Identities = 40/189 (21%), Positives = 80/189 (42%), Gaps = 6/189 (3%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TT     ++ G+I+  D+RAT       + +      ++  ++  +    AG AAD +  
Sbjct: 1   TTTLAFRFQGGIIVAVDSRATA-----GNWVASQTVKRVIEINPFLLGTMAGGAADCQFW 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSI 122
              + +       +    I V     ++   +Y+Y G  L    +I G     G  ++ +
Sbjct: 56  ETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYV 115

Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKV 182
              G+        +G+G   A G+L++ +K +LS ++ L L   +I A    D  SG  V
Sbjct: 116 DSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSV 175

Query: 183 DVTIIRKNG 191
           ++  + ++G
Sbjct: 176 NLYHVTEDG 184

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 234

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  125 bits (316), Expect = 6e-36
 Identities = 35/213 (16%), Positives = 81/213 (38%), Gaps = 24/213 (11%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
            G+T  G+   +GV L  + R T      S ++   +  KI  +   I C  +G  AD K
Sbjct: 26  LGSTAIGIQTSEGVCLAVEKRIT------SPLMEPSSIEKIVEIDAHIGCAMSGLIADAK 79

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY----------LMCAFIIGGI 111
            L        +  +   +  + V      +     ++                A + GG+
Sbjct: 80  TLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGV 139

Query: 112 DSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAG 171
           D  G  QLF +   G+       A+G+  + A   L+  + ++++ KE +   +  +K  
Sbjct: 140 DEKGP-QLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQ- 197

Query: 172 ILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
           ++ +  + + +++  ++        + + + + 
Sbjct: 198 VMEEKLNATNIELATVQPG------QNFHMFTK 224

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  123 bits (310), Expect = 4e-35
 Identities = 39/214 (18%), Positives = 81/214 (37%), Gaps = 18/214 (8%)

Query: 1   MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
           +TGT++  + Y++GVI+ AD   +       S+L  +   ++  + +      +G  +DM
Sbjct: 6   VTGTSVISMKYDNGVIIAADNLGSY-----GSLLRFNGVERLIPVGDNTVVGISGDISDM 60

Query: 61  KRLSGLVEANLEC-----QFPKAHTDIPVICPVTMIKQTLYKYHGYLM---CAFIIGGID 112
           + +  L++  +           A   +        +   +Y+    +     A I+ G+ 
Sbjct: 61  QHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQ 120

Query: 113 SAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE-----NLSEKEGLTLMVDA 167
           S G   L  +   G ++     A G G   A  +L             + +     +V+A
Sbjct: 121 SNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNA 180

Query: 168 IKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKV 201
           ++     D  S     + II KN  ++  K  +V
Sbjct: 181 MRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQV 214

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  121 bits (303), Expect = 2e-34
 Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 7/189 (3%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TT     +  GVI+ AD+RAT       + +      K+  ++  +    AG AAD    
Sbjct: 1   TTTLAFKFRHGVIVAADSRATA-----GAYIASQTVKKVIEINPYLLGTMAGGAADCSFW 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSI 122
             L+         +    I V     ++   +Y+Y G  L    +I G D   G  L+ +
Sbjct: 56  ERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYV 114

Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKV 182
              G+       ++G+G   A G+++ G+  +L  ++   L   AI      D  SG  V
Sbjct: 115 DSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAV 174

Query: 183 DVTIIRKNG 191
           ++  +R++G
Sbjct: 175 NLYHVREDG 183

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  118 bits (296), Expect = 2e-33
 Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 6/189 (3%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TT  GL+ +DGV++  + RATM      + +      KI ++++++    AGS  D + L
Sbjct: 1   TTTVGLVCKDGVVMATEKRATM-----GNFIASKAAKKIYQIADRMAMTTAGSVGDAQFL 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSI 122
           + +++        +      V    T+    L  Y  +  +   +IGGIDS G +     
Sbjct: 56  ARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSID 115

Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKV 182
              G+       A G+G   A G+LE  +   +   E + L V AI + +  D  SG  +
Sbjct: 116 PIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGI 175

Query: 183 DVTIIRKNG 191
           DV  I ++ 
Sbjct: 176 DVVKITEDE 184

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 198

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  116 bits (291), Expect = 1e-32
 Identities = 38/192 (19%), Positives = 75/192 (39%), Gaps = 9/192 (4%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
             I G+  +D VIL +    T         ++  +  K  +LS       AG A D  + 
Sbjct: 2   DIILGIRVQDSVILASSKAVTR-----GISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQF 56

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLM---CAFIIGGID-SAGGNQL 119
           +  ++AN++    +   ++      + ++Q L K            +IGG D      +L
Sbjct: 57  AEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPEL 116

Query: 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSG 179
           + I   G+     + A G        +L+  ++ +++ +EGL L+   ++          
Sbjct: 117 YQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDF 176

Query: 180 SKVDVTIIRKNG 191
             V V I+ K+G
Sbjct: 177 KGVIVKIVDKDG 188

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  116 bits (291), Expect = 2e-32
 Identities = 41/210 (19%), Positives = 68/210 (32%), Gaps = 24/210 (11%)

Query: 1   MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
             G TI G+  ED  +L  DTR           +      K+    + I     G AAD 
Sbjct: 7   DNGGTILGIAGEDFAVLAGDTRNITD-----YSINSRYEPKVFDCGDNIVMSANGFAADG 61

Query: 61  KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQ--TLYKYHGYLMCAFIIGGIDSAGGNQ 118
             L    + +++      +     I       Q     K         II G+D  G   
Sbjct: 62  DALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGA 121

Query: 119 LFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWK-----------------ENLSEKEGL 161
           ++S    GS    +  A G      M  L+                     + LS +E +
Sbjct: 122 VYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVI 181

Query: 162 TLMVDAIKAGILYDLGSGSKVDVTIIRKNG 191
            L+ D+  +     +  G  +++ I+ K+G
Sbjct: 182 KLVRDSFTSATERHIQVGDGLEILIVTKDG 211

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  116 bits (292), Expect = 2e-32
 Identities = 40/208 (19%), Positives = 79/208 (37%), Gaps = 18/208 (8%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
            G+T  G+   D V+LG + ++       + +  +    KI  L + +    AG  AD +
Sbjct: 27  KGSTAVGVRGRDIVVLGVEKKSV------AKLQDERTVRKICALDDNVCMAFAGLTADAR 80

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-----LMCAFIIGGIDSAGG 116
            +        +         + V      I     +Y           + +I G D  G 
Sbjct: 81  IVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGT 140

Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDL 176
            +L+     G+ H  K  A+G G +     LE  + +   E + LT+ +  IKA +    
Sbjct: 141 PRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKL-VIKALLEVVQ 199

Query: 177 GSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
             G  +++ ++R++      +  K+L+ 
Sbjct: 200 SGGKNIELAVMRRD------QSLKILNP 221

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  115 bits (289), Expect = 7e-32
 Identities = 44/205 (21%), Positives = 79/205 (38%), Gaps = 11/205 (5%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
              T  G+L  DGV+L A+ R   K      +       KI +L+E + C  AG  +D  
Sbjct: 29  HAGTCLGILANDGVLLAAERRNIHK-----LLDEVFFSEKIYKLNEDMACSVAGITSDAN 83

Query: 62  ---RLSGLVEANLECQFPKAHTDIPVICPVTMIKQ--TLYKYHGYLMCAFIIGGIDSAGG 116
                  L+      Q+ +      ++  +  IKQ  T +        + +  G D   G
Sbjct: 84  VLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYG 143

Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE-NLSEKEGLTLMVDAIKAGILYD 175
            QL+     G+  G K   +G     A+ +L+  +KE  ++ K  L L +  +   +   
Sbjct: 144 FQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVS 203

Query: 176 LGSGSKVDVTIIRKNGQVSSYKPYK 200
             S  KV++  + +    +  +  K
Sbjct: 204 KLSAEKVEIATLTRENGKTVIRVLK 228

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  115 bits (288), Expect = 1e-31
 Identities = 36/213 (16%), Positives = 81/213 (38%), Gaps = 14/213 (6%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
            G T  G+   +GV++  + +++        + +    SK++ L+  I    +G   D +
Sbjct: 30  QGVTSLGIKATNGVVIATEKKSSSP------LAMSETLSKVSLLTPDIGAVYSGMGPDYR 83

Query: 62  RLSGLVEANLECQFPKAHT-DIPVICPVTMIKQTLYKYHGY-----LMCAFIIGGIDSAG 115
            L           + + +    P    V+ + + + +            + +I G D   
Sbjct: 84  VLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFN 143

Query: 116 GNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYD 175
           G  L+ +   GS    K  A+G G   A   LE  W + L  ++ + + +  +K  +  +
Sbjct: 144 GFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGE 203

Query: 176 LGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPK 208
             +G  +++ II             + +D+ P+
Sbjct: 204 F-NGDTIELAIIGDEN-PDLLGYTGIPTDKGPR 234

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  114 bits (285), Expect = 2e-31
 Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 23/210 (10%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
            G+T  G+ + +GV+L +D +        S ++  ++  KI  + + +    +G  AD +
Sbjct: 21  KGSTALGMKFANGVLLISDKKVR------SRLIEQNSIEKIQLIDDYVAAVTSGLVADAR 74

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPV-------TMIKQTLYKYHGYLMCAFIIGGIDSA 114
            L     A +  Q  K      V            M + T Y        + I  GID  
Sbjct: 75  VLVDF--ARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQI 132

Query: 115 GGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILY 174
           G  +LF     G+ + +K  A+G+G    +  LE  +KENL EKE +TL + A+K+ +  
Sbjct: 133 GP-RLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEE 191

Query: 175 DLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
                   ++  I           Y++   
Sbjct: 192 GE-ELKAPEIASITVGN------KYRIYDQ 214

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (286), Expect = 2e-31
 Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 11/208 (5%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
              T  G++  DG++L A+ + T        +  D +  K+ +L++KI    AG  AD +
Sbjct: 30  HAGTAIGIMASDGIVLAAERKVTST-----LLEQDTSTEKLYKLNDKIAVAVAGLTADAE 84

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-----LMCAFIIGGIDSAGG 116
            L      + +      + DIPV   V  +      Y  +        +FI  G D   G
Sbjct: 85  ILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYG 144

Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDL 176
            QL++    G+  G K  ++G     A  +L+  +K+++   + + L +  +        
Sbjct: 145 YQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSA 204

Query: 177 GSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
            +  +++   IRK          K+   
Sbjct: 205 LTYDRLEFATIRKGA-NDGEVYQKIFKP 231

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  113 bits (284), Expect = 2e-31
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 11/206 (5%)

Query: 1   MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
           +TGT++ G+ +E GV++ AD   +       S+    N S+I R++       +G  AD 
Sbjct: 6   VTGTSVLGVKFEGGVVIAADMLGSY-----GSLARFRNISRIMRVNNSTMLGASGDYADF 60

Query: 61  KRLSGLVEANL-ECQFPKAHTDIPVICPVTMIKQTLYKYHGY--LMCAFIIGGIDSAGGN 117
           + L  ++   + + +              + + + +Y        +   ++ G  + G +
Sbjct: 61  QYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGES 120

Query: 118 QLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAG--WKENLSEKEGLTLMVDAIKAGILYD 175
            L  +   G ++     A G G   A  +L      +  LS+ E   L+   ++     D
Sbjct: 121 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRD 180

Query: 176 LGSGSKVDVTIIRKNGQVSSYKPYKV 201
             S ++     + + G V    P   
Sbjct: 181 ARSYNRFQTATVTEKG-VEIEGPLST 205

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  112 bits (281), Expect = 4e-31
 Identities = 37/194 (19%), Positives = 69/194 (35%), Gaps = 9/194 (4%)

Query: 1   MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
           + G  +  +  +D V +  D R   +     S+ + +   KI      ++    G A D+
Sbjct: 6   INGGIVVAMTGKDCVAIACDLRLGSQ-----SLGVSNKFEKIFHYG-HVFLGITGLATDV 59

Query: 61  KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGN-Q 118
             L+ +          K    I       ++  +LY+          ++ GI+S  G   
Sbjct: 60  TTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPF 119

Query: 119 LFSIFQHGSSHGHK-FCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLG 177
           +      G     K F   GT      G+ E+ ++ NL  ++    +  A+      D  
Sbjct: 120 IAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDAL 179

Query: 178 SGSKVDVTIIRKNG 191
           SG    V II+K+ 
Sbjct: 180 SGWGAVVYIIKKDE 193

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 242

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  113 bits (283), Expect = 5e-31
 Identities = 44/214 (20%), Positives = 81/214 (37%), Gaps = 24/214 (11%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
            G+T  G+  ++GV+LG + RAT        +L   +  KI  +   I C  +G  AD +
Sbjct: 25  LGSTAIGIATKEGVVLGVEKRATSP------LLESDSIEKIVEIDRHIGCAMSGLTADAR 78

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-----------LMCAFIIGG 110
            +                 DI V      +     ++                 A +I G
Sbjct: 79  SMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAG 138

Query: 111 IDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKA 170
            D+  G QLF     G+ + +   A+G+G + A   L   W  +L+ KE   L++  +K 
Sbjct: 139 HDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQ 198

Query: 171 GILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
            ++ +    +   ++ I K         +K+  +
Sbjct: 199 -VMEEKLDENNAQLSCITKQ------DGFKIYDN 225

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  112 bits (282), Expect = 8e-31
 Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 19/208 (9%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
            G T  G+  ++GVIL AD R   K      +L      KI ++ E I    +G  AD +
Sbjct: 30  RGATAIGIKCKEGVILIADKRVGSK------LLEKDTIEKIYKIDEHICAATSGLVADAR 83

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-----LMCAFIIGGIDSAGG 116
            L        +         I V      I     +Y  Y        + +I G++    
Sbjct: 84  VLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVP- 142

Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDL 176
            +L+     G+   +K  A+G G        E  ++++LS  + + L + A+   I  +L
Sbjct: 143 -KLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESEL 201

Query: 177 GSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
                ++V  ++ +      + +K +S 
Sbjct: 202 VP-ENIEVGYVKVDD-----RTFKEVSP 223

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 245

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  112 bits (281), Expect = 1e-30
 Identities = 33/194 (17%), Positives = 75/194 (38%), Gaps = 11/194 (5%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
             +T  G+  +DGV+ G +          S +  + +  ++  +   +    AG  AD +
Sbjct: 32  NSSTAIGIRCKDGVVFGVEKLVL------SKLYEEGSNKRLFNVDRHVGMAVAGLLADAR 85

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLM-----CAFIIGGIDSAGG 116
            L+ +              +IP+      +   ++ Y  Y       C+F++G      G
Sbjct: 86  SLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDG 145

Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDL 176
            QL+ I   G S+G+  CA+G   Q A   +E    + ++ ++ +  +   I        
Sbjct: 146 AQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVK 205

Query: 177 GSGSKVDVTIIRKN 190
               +++++ + + 
Sbjct: 206 DKAFELELSWVGEL 219

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 203

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  111 bits (277), Expect = 1e-30
 Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 8/188 (4%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TT  G+  +D VI+  + R TM      + ++  N  K+ ++        AG   D + L
Sbjct: 1   TTTVGITLKDAVIMATERRVTM-----ENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVL 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQLFSI 122
              ++A LE    +   ++P+    T++   L +      M   ++GGID+     +FSI
Sbjct: 56  VRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDT--APHVFSI 113

Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKV 182
              G S    + + G+G     G+LE+ + E ++  EG+ L++ AI A    D  SG  +
Sbjct: 114 DAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMI 173

Query: 183 DVTIIRKN 190
           DV +I + 
Sbjct: 174 DVAVITRK 181

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (279), Expect = 2e-30
 Identities = 32/201 (15%), Positives = 60/201 (29%), Gaps = 17/201 (8%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
           T      +  +D  ++ +  +          +L     S I  +S  I     G   D +
Sbjct: 29  TNINSLAVRGKDCTVVISQKKVP------DKLLDPTTVSYIFCISRTIGMVVNGPIPDAR 82

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMI-----KQTLYKYHGYLMCAFIIGGIDSAGG 116
             +   +A       K   D+P       +       T   Y   L        +D   G
Sbjct: 83  NAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELG 142

Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGI---- 172
             ++     G   G+K  A G   Q     LE  +K++  +          ++  I    
Sbjct: 143 PSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMI 202

Query: 173 --LYDLGSGSKVDVTIIRKNG 191
             L    S + ++V +  K+ 
Sbjct: 203 DALGTEFSKNDLEVGVATKDK 223

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  109 bits (274), Expect = 3e-30
 Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 8/192 (4%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKR 62
           G  +  +  ++ V + AD R  ++     + L+  +  KI  + +++Y   AG A D++ 
Sbjct: 7   GGAVMAMKGKNCVAIAADRRFGIQ-----AQLVTTDFQKIFPMGDRLYIGLAGLATDVQT 61

Query: 63  LSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDS-AGGNQLF 120
           ++  ++  L     K    I     ++M+   LY+          +I G+D       + 
Sbjct: 62  VAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFIC 121

Query: 121 SIFQHGSSHGHK-FCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSG 179
           S+   G       F   GT  +   G+ E+ W+ N+        +  A+   +  D  SG
Sbjct: 122 SLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSG 181

Query: 180 SKVDVTIIRKNG 191
             V V II K+ 
Sbjct: 182 MGVIVHIIEKDK 193

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  110 bits (277), Expect = 4e-30
 Identities = 46/198 (23%), Positives = 70/198 (35%), Gaps = 15/198 (7%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
            GTT  G+   DGV+   +   T K      +L+     KI  +   I C  +G   D +
Sbjct: 29  NGTTSIGIKCNDGVVFAVEKLITSK------LLVPQKNVKIQVVDRHIGCVYSGLIPDGR 82

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQ-----TLYKYHGYLMCAFIIGGIDSAGG 116
            L                T IP+      + Q     TLY        + I GG+D   G
Sbjct: 83  HLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NG 141

Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILE---AGWKENLSEKEGLTLMVDAIKAGIL 173
             L+ +   GS  G+K  A G G Q A   LE       E LS +E +      I     
Sbjct: 142 AHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHE 201

Query: 174 YDLGSGSKVDVTIIRKNG 191
            +     +++++    + 
Sbjct: 202 DNKEKDFELEISWCSLSE 219

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score =  107 bits (268), Expect = 4e-29
 Identities = 37/212 (17%), Positives = 69/212 (32%), Gaps = 16/212 (7%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI  L Y+ GV+L  D RAT       +++   +  K+    E      AG+A     L
Sbjct: 1   TTIVALTYKGGVLLAGDRRATQG-----NLIASRDVEKVYVTDEYSAAGIAGTAGIAIEL 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY---------LMCAFIIGGIDSA 114
             L    LE         +        +   +    G          L+  + +   D +
Sbjct: 56  VRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDES 115

Query: 115 GGNQLFSIFQHG--SSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGI 172
              ++ S    G        + A+G+G   A   L+  +  +  E+  L   ++++    
Sbjct: 116 RAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAA 175

Query: 173 LYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
             D  +G       I       +      +S+
Sbjct: 176 DDDSATGGPDLTRGIYPTAVTITQAGAVHVSE 207

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 199

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  106 bits (266), Expect = 5e-29
 Identities = 32/191 (16%), Positives = 71/191 (37%), Gaps = 8/191 (4%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
             + G+   D V++ +D  A         + +  +  K+ ++SEKI     G A D  + 
Sbjct: 2   EYLIGIQGPDYVLVASDRVAASN-----IVQMKDDHDKMFKMSEKILLLCVGEAGDTVQF 56

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQ---TLYKYHGYLMCAFIIGGIDSAGGNQLF 120
           +  ++ N++    +   ++         ++      +         ++ G D   G  L+
Sbjct: 57  AEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALY 116

Query: 121 SIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGS 180
            +    +     F A G G    + IL+  +   +S +  + L+   ++      + +  
Sbjct: 117 YMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLP 176

Query: 181 KVDVTIIRKNG 191
              V II KNG
Sbjct: 177 TFSVRIIDKNG 187

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 227

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score =  104 bits (260), Expect = 9e-28
 Identities = 23/216 (10%), Positives = 71/216 (32%), Gaps = 29/216 (13%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
            G ++  L + DGV+  A+  +T                K++ L +++     G   + +
Sbjct: 18  RGRSVVVLTFRDGVLFVAENPSTALH-------------KVSELYDRLGFAAVGKYNEFE 64

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVT-----MIKQTLYKYHGYLMCAFIIGGIDSA-- 114
            L      + + +             +       +     +          +  +     
Sbjct: 65  NLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGS 124

Query: 115 -GGNQLFSIFQHGSSHGHKFCAMGTG-LQPAMGILEAGWKENLSEKEGLTLMVDAIKAGI 172
               QL+ I   GS    +   +  G  +P    +   ++ +L  +  + + V+A++ G 
Sbjct: 125 PKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGG 184

Query: 173 LYDLGSG----SKVDVTIIRKNGQVSSYKPYKVLSD 204
             +        + ++V ++ ++      + ++ ++ 
Sbjct: 185 AGEGEKRNVDVASLEVAVLDQSR---PRRAFRRIAG 217

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  103 bits (258), Expect = 1e-27
 Identities = 43/201 (21%), Positives = 75/201 (37%), Gaps = 15/201 (7%)

Query: 1   MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADM 60
             G TI  +  ED  I+ +DTR +         +   +  K  +L++K     +G   D 
Sbjct: 7   FNGGTILAIAGEDFAIVASDTRLSEG-----FSIHTRDSPKCYKLTDKTVIGCSGFHGDC 61

Query: 61  KRLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-LMCAFIIGGIDSAGGNQL 119
             L+ ++EA L+      +  +       M+   LY    +      IIGG+D  G   +
Sbjct: 62  LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAV 121

Query: 120 FSIFQHGSSHGHKFCAMGTGLQPAMGILE---------AGWKENLSEKEGLTLMVDAIKA 170
           +S    GS     F A G+       +L+               LS    + L+ D   +
Sbjct: 122 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFIS 181

Query: 171 GILYDLGSGSKVDVTIIRKNG 191
               D+ +G  + + I+ K G
Sbjct: 182 AAERDVYTGDALRICIVTKEG 202

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 238

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  102 bits (255), Expect = 6e-27
 Identities = 36/211 (17%), Positives = 65/211 (30%), Gaps = 23/211 (10%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
            G+   GL  +   +L A  RA  +       L  H   KI  +   I    AG  AD +
Sbjct: 28  QGSATVGLKSKTHAVLVALKRAQSE-------LAAHQ-KKILHVDNHIGISIAGLTADAR 79

Query: 62  RLSGLVEAN-----LECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGG 116
            L   +             P   + +  +        T            +I G D   G
Sbjct: 80  LLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MG 138

Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKEN--LSEKEGLTLMVDAIKAGILY 174
             +F      +    +  ++G   Q A   LE    E    +  E +   + A++  +  
Sbjct: 139 PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPA 198

Query: 175 DLG-SGSKVDVTIIRKNGQVSSYKPYKVLSD 204
           +   +   V + I+ K+        + +  D
Sbjct: 199 EQDLTTKNVSIGIVGKDL------EFTIYDD 223

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (252), Expect = 1e-26
 Identities = 26/206 (12%), Positives = 67/206 (32%), Gaps = 11/206 (5%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
            GT   G+  ++ V+LG + R+T+K             SK++++   +    +G  AD +
Sbjct: 27  RGTCAVGVKGKNCVVLGCERRSTLK-----LQDTRITPSKVSKIDSHVVLSFSGLNADSR 81

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-----LMCAFIIGGIDSAGG 116
            L        +         + V      +     +Y           + +I G D    
Sbjct: 82  ILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDD 141

Query: 117 N-QLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYD 175
             +L+     G         +G   +     LE  +            +   +++ +   
Sbjct: 142 EPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVV 201

Query: 176 LGSGSKVDVTIIRKNGQVSSYKPYKV 201
                 +++T+++ +  + +    ++
Sbjct: 202 QTGAKNIEITVVKPDSDIVALSSEEI 227

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 97.8 bits (243), Expect = 2e-25
 Identities = 37/212 (17%), Positives = 65/212 (30%), Gaps = 24/212 (11%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
            G+   GL      +L A  R   +       L  +   KI +  E +    AG A D +
Sbjct: 30  QGSVTVGLRSNTHAVLVALKRNADE-------LSSYQ-KKIIKCDEHMGLSLAGLAPDAR 81

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-----LMCAFIIGGIDSAGG 116
            LS  +           +  + V     ++     K              +I G D +G 
Sbjct: 82  VLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGA 141

Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKEN----LSEKEGLTLMVDAIKAGI 172
             L      G+       A+G   Q A   LE           +  E +   V+AI   +
Sbjct: 142 -HLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL 200

Query: 173 LYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
             +  +   + + I+ K+       P+ +   
Sbjct: 201 RDESLTVDNLSIAIVGKD------TPFTIYDG 226

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 97.0 bits (241), Expect = 7e-25
 Identities = 36/210 (17%), Positives = 71/210 (33%), Gaps = 19/210 (9%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
            G T   +  +D  ++    +          +L     + + +++E I C   G  AD +
Sbjct: 34  GGLTSVAVRGKDCAVIVTQKKVP------DKLLDSSTVTHLFKITENIGCVMTGMTADSR 87

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGY-----LMCAFIIGGIDSAGG 116
                          K   +IPV      I      Y        L C  I+ GID   G
Sbjct: 88  SQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQG 147

Query: 117 NQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKEN--LSEKEGLTLMVDAIKAGILY 174
            Q++     G   G K  A G     +   LE   K+    + ++ +   +  +   +  
Sbjct: 148 PQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSI 207

Query: 175 DLGSGSKVDVTIIRKNGQVSSYKPYKVLSD 204
           D    S+++V ++           +++L++
Sbjct: 208 DFKP-SEIEVGVVTVEN-----PKFRILTE 231

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 94.0 bits (233), Expect = 7e-24
 Identities = 29/194 (14%), Positives = 63/194 (32%), Gaps = 11/194 (5%)

Query: 2   TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMK 61
            G    G+   +GV+L  + +          +  + +  K+  +++ I    +G   D +
Sbjct: 30  GGAPSVGIKAANGVVLATEKKQKSI------LYDERSVHKVEPITKHIGLVYSGMGPDYR 83

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIK----QTLYKYHGYLMCAFIIGGIDSAGGN 117
            L        +  +      IP    V  +     +             ++    + G  
Sbjct: 84  VLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRP 143

Query: 118 QLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLG 177
            LF     G+    K  AMG         LE  + E+L  ++ +   +  +K      + 
Sbjct: 144 YLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQM- 202

Query: 178 SGSKVDVTIIRKNG 191
           +   ++V I  + G
Sbjct: 203 TEDNIEVGICNEAG 216

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Length = 180

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

 Score = 92.2 bits (228), Expect = 1e-23
 Identities = 30/186 (16%), Positives = 58/186 (31%), Gaps = 12/186 (6%)

Query: 3   GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKI-YCCGAGSAADMK 61
            TTI  + ++    +  D + T     G ++++ H   K+ +L         AGS AD  
Sbjct: 5   ATTIFAVQHKGRSAMSGDGQVTF----GQAVVMKHTARKVRKLFNGKVLAGFAGSVADAF 60

Query: 62  RLSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFS 121
            L    EA LE            +       + L K    L+       +  +G      
Sbjct: 61  TLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGT----- 115

Query: 122 IFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSK 181
                        A+G+G   A+    A  K          +   A++      + +  +
Sbjct: 116 --GEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQ 173

Query: 182 VDVTII 187
           + +  +
Sbjct: 174 IILEEL 179

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

 Score = 84.0 bits (207), Expect = 1e-20
 Identities = 26/181 (14%), Positives = 54/181 (29%), Gaps = 13/181 (7%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRL 63
           TTI  +      ++G D + T     GS++L   N  K+ +L E     G   +      
Sbjct: 1   TTILVVRRNGQTVMGGDGQVTF----GSTVL-KGNARKVRKLGEGKVLAGFAGSVADAMT 55

Query: 64  SGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIF 123
                     ++    T   V          + +    L+       I    GN      
Sbjct: 56  LFDRFEAKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISGN------ 109

Query: 124 QHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKVD 183
                      A+G+G   A+   +A  +   ++     ++  A+       + +   + 
Sbjct: 110 GEVIQPDDDAAAIGSGGPYALAAAKALLRN--TDLSAREIVEKAMTIAGEICIYTNQNIV 167

Query: 184 V 184
           +
Sbjct: 168 I 168

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Length = 173

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

 Score = 82.5 bits (203), Expect = 4e-20
 Identities = 29/185 (15%), Positives = 64/185 (34%), Gaps = 14/185 (7%)

Query: 4   TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSE-KIYCCGAGSAADMKR 62
           TTI  +     V++G D + ++    G++++   N  K+ RL   K+    AG  AD   
Sbjct: 1   TTIVSVRRNGQVVVGGDGQVSL----GNTVM-KGNARKVRRLYNGKVLAGFAGGTADAFT 55

Query: 63  LSGLVEANLECQFPKAHTDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSI 122
           L  L E  LE           ++     + +             ++   D      +  I
Sbjct: 56  LFELFERKLE------MHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGI 109

Query: 123 FQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTLMVDAIKAGILYDLGSGSKV 182
                    +  A+G+G   A+    A  +   +E     ++  +++      + + +  
Sbjct: 110 GDVVQPEEDQILAIGSGGNYALSAARALVEN--TELSAHEIVEKSLRIAGDICVFTNTNF 167

Query: 183 DVTII 187
            +  +
Sbjct: 168 TIEEL 172

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	260
d1irui_	220	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1rypi_	222	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1ryph_	205	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1rypk_	198	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1iruh_	202	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1irul_	201	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1ryp2_	233	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1rypl_	212	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1yarh1	203	Proteasome beta subunit (catalytic) {Archaeon Ther	100.0
d1iruc_	250	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1j2qh_	202	Proteasome beta subunit (catalytic) {Archaeon Arch	100.0
d1iru2_	217	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1rypb_	250	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1yara1	221	Proteasome alpha subunit (non-catalytic) {Archaeon	100.0
d1irue_	234	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1rypc_	244	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1irud_	243	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1rype_	242	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1iruj_	204	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1rypa_	243	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1rypj_	204	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1irug_	245	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1rypd_	241	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1ryp1_	222	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1rypf_	233	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1irua_	244	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1j2pa_	243	Proteasome alpha subunit (non-catalytic) {Archaeon	100.0
d1iruf_	238	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1irub_	233	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1iruk_	199	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1q5qh_	224	Proteasome beta subunit (catalytic) {Rhodococcus e	100.0
d1iru1_	213	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1rypg_	244	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1q5qa_	227	Proteasome alpha subunit (non-catalytic) {Rhodococ	100.0
d2z3ba1	180	HslV (ClpQ) protease {Bacillus subtilis [TaxId: 14	99.96
d1m4ya_	171	HslV (ClpQ) protease {Thermotoga maritima [TaxId:	99.95
d1g3ka_	173	HslV (ClpQ) protease {Haemophilus influenzae [TaxI	99.95

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-53  Score=368.07  Aligned_cols=220  Identities=40%  Similarity=0.723  Sum_probs=215.8

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+|+||||||+|+|.++     |.++.+++++||++|++|++||+||..+|++.+.+.++.+++.|++.++++++
T Consensus         1 TTivgi~~~dgVvlaaD~r~s~-----g~~i~~~~~~KI~~i~~~i~~~~aG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   75 (220)
T d1irui_           1 TTIAGVVYKDGIVLGADTRATE-----GMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPR   75 (220)
T ss_dssp             CCEEEEEETTEEEEEECCCEES-----SSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCC
T ss_pred             CeEEEEEECCEEEEEEcCCccc-----CCEeecCCcccEEEecCcEEEEEccccHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            7999999999999999999999     99999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHHH
Q psy15384         84 VICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTL  163 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~l  163 (260)
                      +..+++++++++|++++|+++++|+||+|.+| |+||++||.|++.+++|+|+|+|+.+++++|++.|+++||++||+++
T Consensus        76 ~~~~a~~l~~~~y~~~~p~~~~~ivaG~D~~g-~~L~~id~~G~~~~~~~~a~Gsgs~~a~~~L~~~~~~~~s~~ea~~l  154 (220)
T d1irui_          76 VVTANRMLKQMLFRYRGYIGAALVLGGVDVTG-PHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNL  154 (220)
T ss_dssp             HHHHHHHHHHHHHHTTTCSCEEEEEEEECSSC-EEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTH
T ss_pred             HHHHHHHHHhhhhhcccccceeEEEEEEeCCC-cEEEEEeCCCcEEEeeEEEEccccHHHHHHHHHhcccCCCHHHHHHH
Confidence            99999999999999999999999999999877 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccccccCCCCCcceeeeeeeecc
Q psy15384        164 MVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIE  230 (260)
Q Consensus       164 a~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~  230 (260)
                      +++||+.+.++|..++++++|++|+++| +++++|+++++.|..+..+++||+|+++++++.+.|+|
T Consensus       155 ~~~al~~~~~~D~~sg~~i~i~vitkdg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (220)
T d1irui_         155 VSEAIAAGIFNDLGSGSNIDLCVISKNK-LDFLRPYTVPNKKGTRLGRYRCEKGTTAVLTEKITPLE  220 (220)
T ss_dssp             HHHHHHHHHHHCTTCCSCEEEEEEETTE-EECCSEEECCCCCCCCCSCCCCCTTCSCBSCCCCCBCC
T ss_pred             HHHHHHHhhccCCCCCCcEEEEEEECCC-eEEeCcccccchhhhhhhccccCCCCcceeeeeeEECc
Confidence            9999999999999999999999999999 99999999999999999999999999999999999985

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-52  Score=361.16  Aligned_cols=220  Identities=39%  Similarity=0.672  Sum_probs=214.0

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+|+||||||+|+|.+.     |.++.+++++||++|++||+||++|..+|++.+.+.++.+++.|++.++.+++
T Consensus         1 TTiVgik~~dGVviaaD~r~s~-----g~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~   75 (222)
T d1rypi_           1 TTIVGVKFNNGVVIAADTRSTQ-----GPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPR   75 (222)
T ss_dssp             CCEEEEEETTEEEEEECCCEEE-----TTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             CeEEEEEECCEEEEEECCCccc-----CceeecCCcccEEEEcCCEEEEecccchHHHHHHHHHHHHHHHhhhhhCCCCc
Confidence            7999999999999999999999     99999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHHH
Q psy15384         84 VICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTL  163 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~l  163 (260)
                      +..++++++++++++++|+++++|+||+|++| |+||.+||+|++.+++++|+|+|+.+|+++||+.|+++||++||+++
T Consensus        76 v~~~a~~l~~~~~~~~~p~~~~~l~aG~d~~g-~~Ly~id~~G~~~~~~~~a~Gsg~~~a~~~Le~~~k~~ms~eea~~l  154 (222)
T d1rypi_          76 VVSALQMLKQHLFKYQGHIGAYLIVAGVDPTG-SHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKL  154 (222)
T ss_dssp             HHHHHHHHHHHHHHTTTCSCEEEEEEEEETTE-EEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccceeEEEEEEcCCC-cEEEEEecCcceEEeeEEEECCCcHHHHHHHHhhccCCCCHHHHHHH
Confidence            99999999999999999999999999999866 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccccccCCCCCcceeeeeeeec
Q psy15384        164 MVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPI  229 (260)
Q Consensus       164 a~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~  229 (260)
                      +++||+.++++|..++++++|++|++++..++++++..++.|..++..++||+||++++++.+..|
T Consensus       155 ~~~al~~a~~~D~~sg~~i~i~vi~~~~~~~~~~~~~~~~~~~~~~~~~kf~~~~~~v~~~~~~~~  220 (222)
T d1rypi_         155 ASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTAVLKESIVNI  220 (222)
T ss_dssp             HHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCCCCSSCCCCCTTCSCEEEEEECCC
T ss_pred             HHHHHHHHhcccCCCCCcEEEEEEEcCCCeEEecCcCCchhhhhhhhccCCCCCceeeEeeeeEec
Confidence            999999999999999999999999998768999999999999999999999999999999988766

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.8e-48  Score=329.35  Aligned_cols=188  Identities=27%  Similarity=0.506  Sum_probs=181.4

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|||+|||+|+||||||+|+|.+.     |.++.+++.+||++|++|++||++|..+|++.+.++++.+++.|+++++++
T Consensus         8 ~GtTivgi~~~dgVvlaaD~r~s~-----g~~i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   82 (205)
T d1ryph_           8 LGASIMAVTFKDGVILGADSRTTT-----GAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTP   82 (205)
T ss_dssp             CCCCEEEEEETTEEEEEECCCEEE-----TTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             CcceEEEEEECCEEEEEECCcccc-----CceeeccccceEEEccCceEEeeccchhHHHHHHHHHHHHHHHHHHHcCCc
Confidence            699999999999999999999999     999999999999999999999999999999999999999999999998864


Q ss_pred             CChHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHH
Q psy15384         82 IPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGL  161 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai  161 (260)
                       ++..+++++++++|++++||++++||||+|++++|+||++||.|++.+++|+|+|+|+.+++++||+.|+++||++||+
T Consensus        83 -~~~~~~~~~~~~~~~~~~p~~~~~lvaG~d~~~~p~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~  161 (205)
T d1ryph_          83 -STETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETV  161 (205)
T ss_dssp             -CHHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHHHHH
T ss_pred             -cHHHHHHHHHHHHHhCccCceEEEEEEeecCCCCcEEEEECCCCcEEecCeEEeecCcHHHHHHHHhhhhcccCHHHHH
Confidence             5789999999999999999999999999998888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEc
Q psy15384        162 TLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSY  196 (260)
Q Consensus       162 ~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l  196 (260)
                      +++++||+.++++|..++++++|++||++| ++++
T Consensus       162 ~l~~~al~~a~~rD~~sg~~v~v~iitk~G-~~~~  195 (205)
T d1ryph_         162 DFIKHSLSQAIKWDGSSGGVIRMVVLTAAG-VERL  195 (205)
T ss_dssp             HHHHHHHHHHHHHBTTCCSCEEEEEEETTE-EEEE
T ss_pred             HHHHHHHHHHHHhcCcCCCCEEEEEEcCCc-eEEE
Confidence            999999999999999999999999999999 7654

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.5e-48  Score=326.96  Aligned_cols=193  Identities=20%  Similarity=0.257  Sum_probs=185.0

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      +|+|||+++||||||+|+|.+.     |.++..++.+||++|++||+|++||..||++.+.+.++.+++.|+++++.+++
T Consensus         2 ~tiigi~~~dgVvlaaD~r~s~-----g~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   76 (198)
T d1rypk_           2 DIILGIRVQDSVILASSKAVTR-----GISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELS   76 (198)
T ss_dssp             CCEEEEECSSCEEEEEECCEEE-----TTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             eEEEEEEECCEEEEEEcCCccc-----CCEeecCccceEEEecCCEEEEecCCcccHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            7999999999999999999999     99999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhc---cCcceeeEEEEEEeC-CCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHH
Q psy15384         84 VICPVTMIKQTLYKY---HGYLMCAFIIGGIDS-AGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKE  159 (260)
Q Consensus        84 v~~l~~~l~~~l~~~---~~p~g~sliiaG~D~-~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~ee  159 (260)
                      ++.+++++++.++++   ++||++++||||||+ +++|+||++||+|++.+++|+|+|+|+.+++++||++|+++||++|
T Consensus        77 ~~~~~~~i~~~~~~~~~~~~P~~~~~liaG~D~~~~~p~L~~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~ee  156 (198)
T d1rypk_          77 PQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEE  156 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHH
T ss_pred             hHHHHHHHHHHHHHHHhcccccceEEEEEEEecCCCceEEEEecccccEEecceEEEeccchhhHHHHHhcccccCCHHH
Confidence            999999999988763   469999999999996 4569999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384        160 GLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL  202 (260)
Q Consensus       160 ai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~  202 (260)
                      |++++++||+.+.++|..++++++|++|+++| ++.+.+++++
T Consensus       157 a~~l~~~~l~~~~~~d~~s~~~~~v~vi~~dG-~~~~~~~~~~  198 (198)
T d1rypk_         157 GLDLLKLCVQELEKRMPMDFKGVIVKIVDKDG-IRQVDDFQAQ  198 (198)
T ss_dssp             HHHHHHHHHHHHHHHCSBCCCCEEEEEEETTE-EEEECCCSCC
T ss_pred             HHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCC-eEEcchhccC
Confidence            99999999999999999999999999999999 9999888763

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.5e-48  Score=327.18  Aligned_cols=197  Identities=26%  Similarity=0.449  Sum_probs=189.2

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+|+||||||+|+|.+.     |.++.+++.+||++|++|++||++|..+|++.+.++++.+++.|+++++++++
T Consensus         1 TTivai~~~dgVvlaaD~r~t~-----g~~i~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   75 (202)
T d1iruh_           1 TTIMAVQFDGGVVLGADSRTTT-----GSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPL   75 (202)
T ss_dssp             CCEEEEEETTEEEEEECCCEEE-----TTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             CeEEEEEECCEEEEEECCcccc-----CCeeecCCcceEEEcCCcEEEEeccchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            8999999999999999999999     99999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHHH
Q psy15384         84 VICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLTL  163 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~l  163 (260)
                      ++.+++++++++|++++||++++|++|+|++++|+||.+||.|++.+++|+|+|+|+.+++++||+.|+++||++||+++
T Consensus        76 ~~~~a~~l~~~l~~~~~p~~~~~lvaG~d~~~~~~l~~~d~~g~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~~ea~~l  155 (202)
T d1iruh_          76 VHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQF  155 (202)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccceeEEEEEEEeecCCCcEEEEECCCCceeecceeEEeCCHHHHHHHHHHhhccCCcHHHHHHH
Confidence            99999999999999999999999999999887799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcEEEEEEEcCCcEE--EccCccccCCCC
Q psy15384        164 MVDAIKAGILYDLGSGSKVDVTIIRKNGQVS--SYKPYKVLSDRM  206 (260)
Q Consensus       164 a~~al~~~~~~D~~sg~~iev~vit~~g~~~--~l~~~~~~~~~~  206 (260)
                      +++||+.++++|..+|++++|++|+++| ++  ++.+++++..|.
T Consensus       156 ~~~al~~a~~rD~~sg~~i~v~vi~~~G-~~~~~~~~d~~~~~~~  199 (202)
T d1iruh_         156 TANALALAMERDGSSGGVIRLAAIAESG-VERQVLLGDQIPKFAV  199 (202)
T ss_dssp             HHHHHHHHHHHBTTCCSCEEEEEEETTE-EEEEEECGGGSCCCCC
T ss_pred             HHHHHHHHHhhCCCCCCCEEEEEEeCCC-eEEEEcCHHHhhhhhh
Confidence            9999999999999999999999999998 64  477777776654

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-47  Score=325.28  Aligned_cols=192  Identities=23%  Similarity=0.318  Sum_probs=185.4

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+|+||||||||+|.++     |+++.+++++|||+|+++|+||+||..+|++.+.++++.+++.|++.++.+++
T Consensus         1 TT~igi~~~dgVvlaaD~~~t~-----g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   75 (201)
T d1irul_           1 TTTLAFKFRHGVIVAADSRATA-----GAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERIS   75 (201)
T ss_dssp             CCEEEEEETTEEEEEECCCEEE-----TTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CeEEEEEECCEEEEEEcCcccc-----CCEeecCCcccEEEeCCcEEEEEcCccchHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            7999999999999999999999     99999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHH
Q psy15384         84 VICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLT  162 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~  162 (260)
                      ++.++++|++++++++ .||+++++++|+|++| |+||++||+|++.+++++|+|+|+.+++++||+.|+++||++||++
T Consensus        76 ~~~~a~~l~~~~~~~~~~p~~~~~lvaG~d~~~-~~l~~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~eea~~  154 (201)
T d1irul_          76 VAAASKLLANMVYQYKGMGLSMGTMICGWDKRG-PGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYD  154 (201)
T ss_dssp             HHHHHHHHHHHHHTTTTSCCCBEEEEEEECSSS-EEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHH
T ss_pred             hhHHHHHHHHHhhhccCCCceEEEEEEEEecCC-ceEEEEccCceEEEeeeEEecCchHHHHHHHHhhccCCCCHHHHHH
Confidence            9999999999999886 5999999999999876 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384        163 LMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL  202 (260)
Q Consensus       163 la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~  202 (260)
                      ++++||+++.++|..++++++|++|+++| ++.+.+.+++
T Consensus       155 l~~~~l~~~~~~d~~sg~~~~v~~i~~~G-~~~i~~~ev~  193 (201)
T d1irul_         155 LARRAIYQATYRDAYSGGAVNLYHVREDG-WIRVSSDNVA  193 (201)
T ss_dssp             HHHHHHHHHHHHBTTCCSEEEEEEECSSC-EEEEEEEEHH
T ss_pred             HHHHHHHHHHHhCCCCCCceEEEEEeCCc-eEEECHHHHH
Confidence            99999999999999999999999999999 9888777663

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-47  Score=333.17  Aligned_cols=209  Identities=19%  Similarity=0.198  Sum_probs=196.0

Q ss_pred             CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCC--
Q psy15384          1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKA--   78 (260)
Q Consensus         1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~--   78 (260)
                      .+|||+|||+++||||||+|+|.+.     |+++..++++||++|++|++||+||..+|++.+.+.++.+++.|++++  
T Consensus         6 ~tGtTivgi~~~dgVvlaaD~r~s~-----g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~   80 (233)
T d1ryp2_           6 VTGTSVISMKYDNGVIIAADNLGSY-----GSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPL   80 (233)
T ss_dssp             EEECCEEEEEETTEEEEEEECCEEE-----TTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             cccceEEEEEECCEEEEEECCCccc-----CCeeecCCcceEEEeCCCEEEEeccCchHHHHHHHHHHHHHHHHHHhhCC
Confidence            3799999999999999999999998     899999999999999999999999999999999999999999988765  


Q ss_pred             ---CCCCChHhHHHHHHHHHHhc---cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccC
Q psy15384         79 ---HTDIPVICPVTMIKQTLYKY---HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWK  152 (260)
Q Consensus        79 ---~~~i~v~~l~~~l~~~l~~~---~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~  152 (260)
                         +..+++..+++++++++|.+   .+||++++||+|+|++|+|+||.+||.|++.+++++|+|+|+.+|+++||+.|+
T Consensus        81 ~~~~~~~~~~~~a~~l~~~~y~~~~~~~P~~~~~liaG~d~~g~~~ly~~d~~G~~~~~~~~a~G~g~~~a~~~Le~~~~  160 (233)
T d1ryp2_          81 ADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVD  160 (233)
T ss_dssp             TTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCC
T ss_pred             CCCCcccCHHHHHHHHHHHHHhhccccCCceeEEEEEEEcCCCCeEEEEEcCCCcEEeeeeEEecCccHHHHHHHHHHHh
Confidence               56789999999999988764   369999999999999988999999999999999999999999999999999998


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccC-CCCcccccccC
Q psy15384        153 -----ENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLS-DRMPKCVQCII  214 (260)
Q Consensus       153 -----~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~-~~~~~~~~~~~  214 (260)
                           |+||+|||++++++||+.+++||+.++++|+|++|++|++++++.|+++++ .|.+++..-.|
T Consensus       161 ~~~~~~~ms~eeA~~l~~~al~~~~~rD~~sg~~i~i~~itkd~g~~~~~~~~ie~~~~~~a~~~~~~  228 (233)
T d1ryp2_         161 RESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAKDIKGY  228 (233)
T ss_dssp             SGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCSCCCGGGGGCCSS
T ss_pred             hcccccccCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCCCEEECChhcchhhhhhHhhhccCc
Confidence                 789999999999999999999999999999999999985599999999987 79988776666

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-47  Score=326.57  Aligned_cols=194  Identities=21%  Similarity=0.300  Sum_probs=186.8

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+||||||||+|+|+++     |.++..++++|||+|++||+||+||..+|++.++++++.+++.|++.++++++
T Consensus         1 TT~iai~~kdgVvlaaD~r~t~-----g~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   75 (212)
T d1rypl_           1 TTTLAFRFQGGIIVAVDSRATA-----GNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERIS   75 (212)
T ss_dssp             CCEEEEEETTEEEEEECCCEEE-----TTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CeEEEEEECCEEEEEEcCcccc-----CceeecCCcceEEEECCcEEEEeccchHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            8999999999999999999999     99999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhccC-cceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHH
Q psy15384         84 VICPVTMIKQTLYKYHG-YLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLT  162 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~~-p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~  162 (260)
                      +..+++++++++|+|++ |++++.+++|+|++++|+||++||+|++.+++++|+|+|+.+++++||++|+++||++||++
T Consensus        76 ~~~~a~~ls~~~~~~~~~p~~~~~~l~G~~~~~g~~Ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~mt~~ea~~  155 (212)
T d1rypl_          76 VAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALY  155 (212)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCcceEeeeeEeecCCCCEEEEECCCceEEecceEEEccCcccchhHHHHhccCCCCHHHHHH
Confidence            99999999999998864 88999999999988779999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccC
Q psy15384        163 LMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLS  203 (260)
Q Consensus       163 la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~  203 (260)
                      ++++||+.+++||..++++++|++|+++| ++++.++++..
T Consensus       156 l~~~al~~~~~rd~~sg~~v~v~vi~~~g-~~~~~~~ev~~  195 (212)
T d1rypl_         156 LGKRSILAAAHRDAYSGGSVNLYHVTEDG-WIYHGNHDVGE  195 (212)
T ss_dssp             HHHHHHHHHHHHBTTCCSEEEEEEEETTE-EEEEEEEEHHH
T ss_pred             HHHHHHHHHHHhcCCCCCceEEEEEcCCc-eEEeCHHHHHH
Confidence            99999999999999999999999999999 99997777644

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=3.1e-46  Score=317.52  Aligned_cols=193  Identities=26%  Similarity=0.407  Sum_probs=183.6

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+|+||||||+|+|++.     |+++.+++++|||+|++||+||+||..+|++.+++.++.+++.|++.++.+++
T Consensus         1 TT~igi~~kdgVvia~D~r~s~-----~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   75 (203)
T d1yarh1           1 TTTVGITLKDAVIMATERRVTM-----ENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMP   75 (203)
T ss_dssp             CCEEEEEETTEEEEEECCCEEE-----TTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CcEEEEEECCEEEEEECCCccc-----CCEeecCCcccEEEecCCeeeecCCCcchHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            7999999999999999999999     89999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHHH
Q psy15384         84 VICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGLT  162 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai~  162 (260)
                      ++.++++|++++++++ +||++++|+||+|. + |+||++||+|++.+++++|+|+|+..++++||++|+++||++||++
T Consensus        76 ~~~~a~~l~~~~~~~~~~p~~~~~lvaG~d~-~-p~l~~~d~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~eea~~  153 (203)
T d1yarh1          76 IEAVATLLSNMLNQVKYMPYMVQLLVGGIDT-A-PHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVD  153 (203)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCCEEEEEEEESS-S-EEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccCCccceeEEEEEcC-C-CeeEecCCccceecccccccCCCcHHHHHHHHHhccCCCCHHHHHH
Confidence            9999999999988876 69999999999985 3 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccC
Q psy15384        163 LMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLS  203 (260)
Q Consensus       163 la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~  203 (260)
                      ++.+||+.+.++|..++++++|++|+++++++.+.+.+++.
T Consensus       154 l~~~~l~~~~~~d~~~~~~v~v~ii~~~~g~~~l~~~ei~~  194 (203)
T d1yarh1         154 LVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIES  194 (203)
T ss_dssp             HHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCeEEEEEEECCCCEEECCHHHHHH
Confidence            99999999999999999999999999765599887766643

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.8e-46  Score=327.18  Aligned_cols=185  Identities=23%  Similarity=0.291  Sum_probs=177.7

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|++.++     |.++.+++.+|||+|++||+||+||..+|++.+++.++.+++.|++.++.+
T Consensus        29 ~G~tvvgik~~dgVvlaad~~~~~-----~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~  103 (250)
T d1iruc_          29 HAGTCLGILANDGVLLAAERRNIH-----KLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEP  103 (250)
T ss_dssp             TSCCEEEEBCSSEEEEEECCCCCC-----TTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCcEEEEEeCCEEEEEEeCcccc-----CCcccCcccceEEECCCcEEEEeecccchHHHHHHHHHHHHHHHHHHcCCC
Confidence            699999999999999999999999     889999999999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhcc-----CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCC-CC
Q psy15384         82 IPVICPVTMIKQTLYKYH-----GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE-NL  155 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~~-----~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~-~m  155 (260)
                      ++++.+++.++++++.+.     +||++++||+|+|++++|+||++||+|++.+++++|+|+|+..++++||++|++ +|
T Consensus       104 i~~~~la~~l~~~~~~~~~~~~~rP~~~~~li~G~D~~~gp~Ly~~Dp~G~~~~~~~~a~G~gs~~a~~~Le~~y~~~~m  183 (250)
T d1iruc_         104 IPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEM  183 (250)
T ss_dssp             CCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCCTTCC
T ss_pred             cchHHHHHHHHHHHHHHhhhccCCcceEEEEEEEEcCCCCCEEEEEcccccEeeeeEEEeCcChHHHHHHHHhhcccCCC
Confidence            999999999999887653     499999999999988779999999999999999999999999999999999985 89


Q ss_pred             CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCC
Q psy15384        156 SEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNG  191 (260)
Q Consensus       156 s~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g  191 (260)
                      |++||++++++||+.++++|..++++++|++|++++
T Consensus       184 s~eeai~la~~al~~~~~~d~~~~~~iei~ii~~~~  219 (250)
T d1iruc_         184 TLKSALALAIKVLNKTMDVSKLSAEKVEIATLTREN  219 (250)
T ss_dssp             CHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCS
T ss_pred             CHHHHHHHHHHHHHHHhcccCCCCCeEEEEEEEcCC
Confidence            999999999999999999999999999999999987

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2.1e-45  Score=311.37  Aligned_cols=192  Identities=28%  Similarity=0.432  Sum_probs=183.7

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+++||||||+|+|.+.     |+++.+++++|||+|++||+||+||..+|++.+.++++.+++.|++.++.+++
T Consensus         1 TT~vgi~~~dgVvlaaD~r~s~-----~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   75 (202)
T d1j2qh_           1 TTTVGLVCKDGVVMATEKRATM-----GNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPT   75 (202)
T ss_dssp             CCEEEEEETTEEEEEEECCEEE-----TTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CcEEEEEECCEEEEEECCCccc-----CCeeccCccceEEEecCcEEEEecCcchhHHHHHHHHHHHhhhhhhccCCCcc
Confidence            7999999999999999999999     99999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEEee-CEEEEcCChHHHHHHHHhccCCCCCHHHHH
Q psy15384         84 VICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGH-KFCAMGTGLQPAMGILEAGWKENLSEKEGL  161 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~-~~~aiGsgs~~a~~~Le~~y~~~ms~eeai  161 (260)
                      ++.+++++++++++++ +||++++|+||+|++| |+||++||+|++.++ .++|+|+|+.+++++||++|+++||++||+
T Consensus        76 ~~~~a~~~~~~~~~~~~~p~~~~~lvaG~d~~~-~~l~~~d~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~  154 (202)
T d1j2qh_          76 VRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEG-KSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAV  154 (202)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTE-EEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHhhhcccceeeEEEEEEEcCCC-ceEEEEeCCCCeEeecceEEccCChHHHHHHHHhhcCCCCCHHHHH
Confidence            9999999999999876 4999999999999877 999999999998876 599999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384        162 TLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL  202 (260)
Q Consensus       162 ~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~  202 (260)
                      +++++||..++++|..++++++|++|+++| ++.+.|.+++
T Consensus       155 ~l~~~al~~~~~~d~~~g~~v~v~~i~~~g-~~~~~~~ei~  194 (202)
T d1j2qh_         155 ELAVRAIYSAMKRDSASGDGIDVVKITEDE-FYQYSPEEVE  194 (202)
T ss_dssp             HHHHHHHHHHHTTCTTSCSCEEEEEECSSC-EEECHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCeEEEEEEECCC-EEEeCHHHHH
Confidence            999999999999999999999999999999 9999777654

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-45  Score=316.60  Aligned_cols=202  Identities=19%  Similarity=0.203  Sum_probs=189.4

Q ss_pred             CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCC-CCC
Q psy15384          1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFP-KAH   79 (260)
Q Consensus         1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~-~~~   79 (260)
                      .+|||+|||+++||||||+|+|.+.     |.++..++++||++|++|++||++|..+|++.+.+.++.++..|+. .++
T Consensus         6 ~~GtTivgi~~~dgVviaaD~r~t~-----g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~   80 (217)
T d1iru2_           6 VTGTSVLGVKFEGGVVIAADMLGSY-----GSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDG   80 (217)
T ss_dssp             SEECCCEEEEETTEEEEEEECCEEE-----TTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             CcccEEEEEEECCEEEEEEcCCccc-----CCeeecCCcceEEEeCCCeEEEeccccHHHHHHHHHHHHHHHHhhhhcCC
Confidence            4799999999999999999999999     9999999999999999999999999999999999999999988764 567


Q ss_pred             CCCChHhHHHHHHHHHHhc---cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccC--CC
Q psy15384         80 TDIPVICPVTMIKQTLYKY---HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWK--EN  154 (260)
Q Consensus        80 ~~i~v~~l~~~l~~~l~~~---~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~--~~  154 (260)
                      .+++++.+++++++.+|.+   .+|+++++|+||+|.. +|+||.+||+|++.+++++|+|+|+.+++++||+.|+  ++
T Consensus        81 ~~~~v~~~a~~l~~~~y~~~~~~~p~~~~~li~G~d~~-~~~l~~~D~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~  159 (217)
T d1iru2_          81 HSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADG-ESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPV  159 (217)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETT-EEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSC
T ss_pred             CCCCHHHHHHHHHHHHHHhccccCcccceEEEEEEcCC-CcEEEEEecCceeEeeeEEeccCcHHHHHHHHHHHhcccCC
Confidence            8999999999999988754   3599999999999965 5999999999999999999999999999999999664  89


Q ss_pred             CCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCccc
Q psy15384        155 LSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKC  209 (260)
Q Consensus       155 ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~  209 (260)
                      ||++||++++++||+.++++|..++++++|++|+++| ++++.|++++..|.+++
T Consensus       160 lt~~ea~~l~~~al~~a~~rd~~sg~~i~i~vi~~~G-~~~~~~~~~~~~~~~a~  213 (217)
T d1iru2_         160 LSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKG-VEIEGPLSTETNWDIAH  213 (217)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE-EEEEEEECCCCCCGGGG
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEeCCC-EEEcCCeeccccHHHHh
Confidence            9999999999999999999999999999999999999 99999999999999763

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.8e-46  Score=325.05  Aligned_cols=213  Identities=17%  Similarity=0.257  Sum_probs=190.1

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHh-hcCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLE-CQFPKAHT   80 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~-~~~~~~~~   80 (260)
                      +|+|+|||+++||||||+|+|.+.     + ++..++++||++|++|++|++||.++|++.++++++.+++ .|+..+++
T Consensus        30 ~G~tvvgi~~~dgVvlaad~r~~~-----~-~~~~~~~~ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~y~~~~~~  103 (250)
T d1rypb_          30 QGVTSLGIKATNGVVIATEKKSSS-----P-LAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGE  103 (250)
T ss_dssp             TSCCEEEEEETTEEEEEEECCCSC-----S-SBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSS
T ss_pred             cCCCEEEEEeCCEEEEEEecccCC-----c-cccccccceeEeccCCEEEEeeecccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            699999999999999999999887     4 4567889999999999999999999999999999999987 58889999


Q ss_pred             CCChHhHHHHHHHHHHhcc-----CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCC
Q psy15384         81 DIPVICPVTMIKQTLYKYH-----GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENL  155 (260)
Q Consensus        81 ~i~v~~l~~~l~~~l~~~~-----~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~m  155 (260)
                      +++++.+++.++++++++.     +||++++||||+|++++|+||++||+|++.+++++|+|+|+.+++++||++|+++|
T Consensus       104 ~~~~~~la~~~~~~~~~~~~~~~~rp~~v~~li~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~m  183 (250)
T d1rypb_         104 YPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDEL  183 (250)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTC
T ss_pred             CCCHHHHHHHHHHHHHHHhhhcCCcCeeEEEEEEEecCCCCCEEEEEcCcEEEEEeeEEecCcchHHHHHHHHHhcccCC
Confidence            9999999999999876542     59999999999998767999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccccccCCCCCcceeeeeee
Q psy15384        156 SEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVI  227 (260)
Q Consensus       156 s~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~  227 (260)
                      |++||++++++||++++.+|. +++++||++|++++ ...+.+..++..|..     .|+..++++|++++.
T Consensus       184 s~eea~~la~~al~~~~~~d~-s~~~iev~vi~~~~-~~~~~~~~v~~~~~~-----~fr~ls~eei~~~l~  248 (250)
T d1rypb_         184 ELEDAIHIALLTLKESVEGEF-NGDTIELAIIGDEN-PDLLGYTGIPTDKGP-----RFRKLTSQEINDRLE  248 (250)
T ss_dssp             CHHHHHHHHHHHHHHHCCSCC-STTTEEEEEECSCC-GGGTSEESCSSCCCC-----SEEECCHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhhccC-CCCCEEEEEEeCCC-cccccccccccccCC-----ceEECCHHHHHHHHH
Confidence            999999999999999999996 68999999999998 666666666665553     455567777766554

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=8.1e-45  Score=313.01  Aligned_cols=193  Identities=22%  Similarity=0.326  Sum_probs=180.4

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|+|.+.      +++..++++||++|++|++||++|+.+|++.+.+.++.+++.|+++++++
T Consensus        21 ~G~t~vgi~~~dgVvlaad~r~~~------~~~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   94 (221)
T d1yara1          21 KGSTALGMKFANGVLLISDKKVRS------RLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSL   94 (221)
T ss_dssp             TSCCEEEEEETTEEEEEECCCCCC------TTBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCcEEEEEeCCEEEEEEecccCC------cccccCccceEEEecCCceEEeeeccchHHHHHHHHHHHHHHHHHHcCCc
Confidence            699999999999999999999875      67788999999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS  156 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms  156 (260)
                      ++++.+++.++.+++++     .+||++++||||+|++| |+||++||+|++.+++++|+|+|+..++++||++|+++||
T Consensus        95 ~~~~~l~~~~a~~~~~~~~~~~~rP~~~~~li~G~d~~g-p~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms  173 (221)
T d1yara1          95 VNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIG-PRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLP  173 (221)
T ss_dssp             CCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSC-EEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred             chHHHHHHHHHHHHHHHhhhccCCCcceEEEEEEEecCC-CeEEEEcCCccEEEeeEEEECCchHHHHHHHHHHhhcccc
Confidence            99999999999988765     25999999999999776 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL  202 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~  202 (260)
                      ++||++++++||+.++++|. ++++++|++|+++++++++.+.+++
T Consensus       174 ~~ea~~la~~~l~~~~~~~~-~~~~~ei~~i~~~~~~r~l~~~ei~  218 (221)
T d1yara1         174 EKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNKYRIYDQEEVK  218 (221)
T ss_dssp             HHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSCCEECCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccC-CCCCcEEEEEEcCCCEEECCHHHHH
Confidence            99999999999999998876 5789999999987769999777654

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.2e-45  Score=317.44  Aligned_cols=192  Identities=18%  Similarity=0.290  Sum_probs=178.6

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|++.+.     + ++..++++||++|++|++||+||+.+|++.+++.++.++..|+++++++
T Consensus        26 ~G~t~vgik~~dgVvlaad~~~~~-----~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   99 (234)
T d1irue_          26 LGSTAIGIQTSEGVCLAVEKRITS-----P-LMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNET   99 (234)
T ss_dssp             TSCCEEEEEETTEEEEEEECCCCC-----T-TBCTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCCEEEEEeCCEEEEEEecCccC-----C-CcccCcccCEEEccCcEEEEEeeccchHHHHHHHHHHHHHHHHHhhCCC
Confidence            699999999999999999999987     4 5668899999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc----------cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhcc
Q psy15384         82 IPVICPVTMIKQTLYKY----------HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGW  151 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~----------~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y  151 (260)
                      ++++.++++|++++++|          .+||++++|+||||++| |+||++||+|++.+++++|+|+|+..++++||+.|
T Consensus       100 i~~~~la~~i~~~~~~~t~~~~~~~~~~rP~~~~~il~G~D~~g-p~Ly~idp~G~~~~~~~~a~G~gs~~~~~~Le~~~  178 (234)
T d1irue_         100 MTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKG-PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELY  178 (234)
T ss_dssp             CCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTE-EEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHhhcccccccccccceEEEEEEEEcCCC-CEEEEEecCcccceeeeEEeCCchHHHHHHHHHhh
Confidence            99999999999988754          35999999999999876 99999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccc
Q psy15384        152 KENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKV  201 (260)
Q Consensus       152 ~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~  201 (260)
                      +++|+++||++++++||+.+..+|. +++++||++|+++++++++.+.++
T Consensus       179 ~~~~~~eeai~~a~~al~~~~~~~~-~~~~iei~ii~~~~~~k~l~~~ei  227 (234)
T d1irue_         179 HKSMTLKEAIKSSLIILKQVMEEKL-NATNIELATVQPGQNFHMFTKEEL  227 (234)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHCSSCC-CTTSEEEEEECSSSCCEECCHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHhccC-CCCCEEEEEEECCCCEEECCHHHH
Confidence            9999999999999999999887775 678999999998766888866554

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-44  Score=316.60  Aligned_cols=185  Identities=22%  Similarity=0.326  Sum_probs=178.3

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|+|.+.     |.++.+++++||++|++|++++++|+++|++.+++.++.+++.|+++++++
T Consensus        30 ~G~T~vgi~~~dgVvlaad~r~s~-----~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~  104 (244)
T d1rypc_          30 HAGTAIGIMASDGIVLAAERKVTS-----TLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNED  104 (244)
T ss_dssp             TSCCEEEEEETTEEEEEEECSSCC-----SSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCCEEEEEeCCEEEEEEeCCccC-----CCcccCCccceEEEcCCCeEEEEecccCcHHHHHHHHHHHHHHHHHHhCCC
Confidence            799999999999999999999999     899999999999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS  156 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms  156 (260)
                      ++++.+++.++++++++     .+||++++||||+|++++|+||++||+|++.+++++|+|+|+.+|+++||++|+++||
T Consensus       105 ~~~~~~~~~l~~~~~~~~~~~~~rP~~~~~ll~G~d~~~gp~Ly~id~~Gs~~~~~~~a~G~g~~~a~~~Le~~~~~~ms  184 (244)
T d1rypc_         105 IPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMK  184 (244)
T ss_dssp             CCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred             CCHHHHHHHHHHHHhhhhhccccCccceeEEEEEEecCCCceEEEecCCCcEeeeeeeeccchhHHHHHHHHhcccCCCC
Confidence            99999999999987654     3599999999999987779999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCC
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNG  191 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g  191 (260)
                      ++||++++++||+.++++|..+++++||++|++++
T Consensus       185 ~eeai~l~~~al~~a~~~d~~~~~~iei~ii~~~~  219 (244)
T d1rypc_         185 VDDAIELALKTLSKTTDSSALTYDRLEFATIRKGA  219 (244)
T ss_dssp             HHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCS
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCC
Confidence            99999999999999999999999999999999987

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.5e-45  Score=318.50  Aligned_cols=209  Identities=20%  Similarity=0.321  Sum_probs=187.4

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|+|++      +.++..++++|||+|++||+|++||+.+|++.+++.++.+++.|+++++.+
T Consensus        27 ~G~Tvvgik~~dgVvla~d~r~~------~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~  100 (243)
T d1irud_          27 KGSTAVGVRGRDIVVLGVEKKSV------AKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDP  100 (243)
T ss_dssp             TSCCEEEECCSSEEEEEECCCCC------CSSSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred             cCCCEEEEEeCCEEEEEEecccc------CcccCCCccccEEECCCCEEEEEEEchhhHHHHHHHHHHHHHHHHHhcCCC
Confidence            69999999999999999999965      588899999999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCC-
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENL-  155 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~m-  155 (260)
                      ++++.++++|++++++|     .+||++++||+|||++|+|+||++||+|++.+++++|+|+|+..++++||++|+++| 
T Consensus       101 i~v~~la~~ls~~~~~~t~~~~~rp~~v~~li~G~D~~~~p~Ly~idp~G~~~~~~~~a~G~gs~~a~~~Lek~~~~~~~  180 (243)
T d1irud_         101 VTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI  180 (243)
T ss_dssp             CCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCCSSTT
T ss_pred             ccHHHHHHHHHHHHHHHHhcccCCccceEEEEEEEcCCCCCEEEEecCcEEEEeccEEEECCChHHHHHHHHHhcccCCC
Confidence            99999999999988654     359999999999998877999999999999999999999999999999999999998 


Q ss_pred             -CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccccccCCCCCcceeeeeeeecccccc
Q psy15384        156 -SEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKKPS  234 (260)
Q Consensus       156 -s~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~~~  234 (260)
                       +.++++++++++|....   ..++++|+|++|+++++++++                     +.++|++++.+|+.++.
T Consensus       181 ~~~~~~i~~ai~~l~~~~---~~~~~~vei~ii~k~~~~~~l---------------------~~~eI~~~l~~i~~~~~  236 (243)
T d1irud_         181 ETDDLTIKLVIKALLEVV---QSGGKNIELAVMRRDQSLKIL---------------------NPEEIEKYVAEIEKEKE  236 (243)
T ss_dssp             CSHHHHHHHHHHHHHTTS---CTTSTTCCEEEEESSSCEECC---------------------CHHHHHHHTTTTTTTTT
T ss_pred             ccHHHHHHHHHHHHHHHh---cCCCCcEEEEEEECCCCEEEC---------------------CHHHHHHHHHHHHhhhh
Confidence             77788888888877644   445789999999998547776                     56667788888887776


Q ss_pred             cccccc
Q psy15384        235 EGKKRK  240 (260)
Q Consensus       235 ~~~~~~  240 (260)
                      ++.+++
T Consensus       237 ~~~~~~  242 (243)
T d1irud_         237 ENEKKK  242 (243)
T ss_dssp             TTTSSC
T ss_pred             hhhhcc
Confidence            665543

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-44  Score=315.75  Aligned_cols=193  Identities=24%  Similarity=0.316  Sum_probs=179.5

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|+|.+.     | ++..++++||++|+++|+|++||..+|++.++++++.+++.|++.++++
T Consensus        25 ~G~t~Vgi~~~dgVvla~d~r~~~-----~-~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   98 (242)
T d1rype_          25 LGSTAIGIATKEGVVLGVEKRATS-----P-LLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDED   98 (242)
T ss_dssp             TSCCEEEEECSSCEEEEEECCCSS-----T-TBCGGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCCEEEEEeCCEEEEEEeCCccC-----c-CcccCccceEEEcCCCEEEEEeecchhHHHHHHHHHHHHHHHHHHcCCC
Confidence            699999999999999999999988     5 7788889999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----------cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhc
Q psy15384         82 IPVICPVTMIKQTLYKY-----------HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAG  150 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----------~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~  150 (260)
                      ++++.+++.|++++++|           .+||++++||||+|++++|+||++||+|++.+++++|+|+|+..++++||++
T Consensus        99 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~rP~~~~~ii~G~D~~~~p~L~~idp~G~~~~~~~~a~G~gs~~~~~~Le~~  178 (242)
T d1rype_          99 INVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNE  178 (242)
T ss_dssp             CCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhccccccchhccccceEEEEEEEeccccceEEEEEcCCCceeccceeecccchHHHHHHHHHh
Confidence            99999999999987654           3599999999999988889999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccc
Q psy15384        151 WKENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKV  201 (260)
Q Consensus       151 y~~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~  201 (260)
                      |+++||++||++++++||+.+.++|.. +++++|++|+++.+++++.+.++
T Consensus       179 ~~~~ms~~ea~~la~~~l~~~~~~~~~-~~~~~v~~i~~~~g~~~l~~~~i  228 (242)
T d1rype_         179 WHSSLTLKEAELLVLKILKQVMEEKLD-ENNAQLSCITKQDGFKIYDNEKT  228 (242)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHCSSCCC-TTSEEEEEEETTTEEEECCHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHhccCC-CCceEEEEEECCCCeEECCHHHH
Confidence            999999999999999999999988864 56899999998655998855544

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-43  Score=300.64  Aligned_cols=188  Identities=22%  Similarity=0.296  Sum_probs=178.9

Q ss_pred             CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCC
Q psy15384          1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHT   80 (260)
Q Consensus         1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~   80 (260)
                      .+|||+|||+++||||||+|+|.+.     |.++..++.+||++|++|++||++|..+|++.+.++++.+++.|++.++.
T Consensus         5 ~nG~Tvigi~~~dgVvlaaD~r~s~-----g~~~~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~   79 (204)
T d1iruj_           5 YNGGAVMAMKGKNCVAIAADRRFGI-----QAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGR   79 (204)
T ss_dssp             SSCCEEEEEECSSEEEEEEECCEEE-----TTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             eCCceEEEEEECCEEEEEECCCccc-----CCeeEcCcccEEEEeCCCeEEEeccCchHHHHHHHHHHHhhhhhhhhccc
Confidence            3799999999999999999999999     99999999999999999999999999999999999999999999999999


Q ss_pred             CCChHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCC-CceEEEEeecceEEee-CEEEEcCChHHHHHHHHhccCCCCCH
Q psy15384         81 DIPVICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAG-GNQLFSIFQHGSSHGH-KFCAMGTGLQPAMGILEAGWKENLSE  157 (260)
Q Consensus        81 ~i~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g-~p~Ly~idp~Gs~~~~-~~~aiGsgs~~a~~~Le~~y~~~ms~  157 (260)
                      ++++..+++++++++|+++ +||++++||||+|+++ +|++|.+||.|....+ .+++.|+|+.+++++|++.|+++||+
T Consensus        80 ~~~~~~~a~~l~~~~~~~~~~p~~~~~lvaG~D~~~~~~~~~~~d~~g~~~~~~~~~~~G~g~~~~~~~l~~~~~~~ms~  159 (204)
T d1iruj_          80 QIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP  159 (204)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred             ccchHHHHHHHHHHHHHhhhccceeEEEEEEEcCCCCceEEEEecCCCceeeecceEEechhHHHHHHHHHhccccCCCH
Confidence            9999999999999999874 5999999999999754 5889999999987765 58999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEE
Q psy15384        158 KEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVS  194 (260)
Q Consensus       158 eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~  194 (260)
                      +||++++++||+.+.++|..++++++|++|+++| ++
T Consensus       160 ~ea~~l~~~al~~a~~rd~~sg~~~~v~ii~k~g-i~  195 (204)
T d1iruj_         160 DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDK-IT  195 (204)
T ss_dssp             HHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSB-EE
T ss_pred             HHHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCC-EE
Confidence            9999999999999999999999999999999999 65

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-44  Score=313.44  Aligned_cols=193  Identities=16%  Similarity=0.095  Sum_probs=179.0

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|+|++.      +++..++++||++|++|++|++||+.+|++.+.++++.+++.|+++++++
T Consensus        29 ~g~T~igik~~dgVvlaad~r~~~------~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~  102 (243)
T d1rypa_          29 TNINSLAVRGKDCTVVISQKKVPD------KLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYD  102 (243)
T ss_dssp             TCCCEEEEECSSEEEEEEECCCCC------TTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCceEEEEEcCCEEEEEEeccccc------cccccCcccceEecCCCEEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            377999999999999999999886      67888899999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCC---
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE---  153 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~---  153 (260)
                      ++++.+++.|++.++.+     .+||++++||||||++++|+||++||+|++.+++++|+|+|+..++++||++|++   
T Consensus       103 ~~~~~~a~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~g~~Ly~~Dp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~  182 (243)
T d1rypa_         103 MPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKI  182 (243)
T ss_dssp             CCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCS
T ss_pred             CCHHHHHHHHHHHHHHHhhcccccCccceEEEEEEccCCCCeEEEEcCCEEEEecceEEeCccHHHHHHHHHHHhhcccc
Confidence            99999999999887644     4599999999999988779999999999999999999999999999999999985   


Q ss_pred             ----CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384        154 ----NLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL  202 (260)
Q Consensus       154 ----~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~  202 (260)
                          +||.+||++++++||+.++.+|. ++++++|++++++| ++.+.+++++
T Consensus       183 ~~~~~~s~eeav~la~~~l~~~~~~d~-~~~~iei~iitk~g-~~~l~~eeI~  233 (243)
T d1rypa_         183 DHINEESWEKVVEFAITHMIDALGTEF-SKNDLEVGVATKDK-FFTLSAENIE  233 (243)
T ss_dssp             SSCCCSSHHHHHHHHHHHHHHHHTCCC-CTTSEEEEEEETTE-EEECCHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCCc-eEEeCHHHHH
Confidence                45999999999999999999997 68899999999999 9999666553

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-43  Score=297.96  Aligned_cols=187  Identities=21%  Similarity=0.255  Sum_probs=177.9

Q ss_pred             CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCC
Q psy15384          1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHT   80 (260)
Q Consensus         1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~   80 (260)
                      ++|+|+|||+++||||||+|+|.+.     |.++..++.+|||++ +|++|+++|..+|++.+.++++.+++.|+++++.
T Consensus         6 ~nG~Tivgi~~~d~VvlaaD~r~~~-----~~~~~~~~~~Ki~~i-~~i~~~~~G~~~D~~~l~~~~~~~~~~~~~~~~~   79 (204)
T d1rypj_           6 INGGIVVAMTGKDCVAIACDLRLGS-----QSLGVSNKFEKIFHY-GHVFLGITGLATDVTTLNEMFRYKTNLYKLKEER   79 (204)
T ss_dssp             SSCCEEEEEECSSEEEEEEECCEEE-----TTEEEESCCCCEEEE-TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             cCCeEEEEEEECCEEEEEEcCCccc-----CCEeecCcccEEEEc-CCEEEEecCcchHHHHHHHHHHHHHHHHHHhcCC
Confidence            5799999999999999999999999     899999999999999 5999999999999999999999999999999999


Q ss_pred             CCChHhHHHHHHHHHHhcc-CcceeeEEEEEEeC-CCCceEEEEeecceEEeeC-EEEEcCChHHHHHHHHhccCCCCCH
Q psy15384         81 DIPVICPVTMIKQTLYKYH-GYLMCAFIIGGIDS-AGGNQLFSIFQHGSSHGHK-FCAMGTGLQPAMGILEAGWKENLSE  157 (260)
Q Consensus        81 ~i~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~-~g~p~Ly~idp~Gs~~~~~-~~aiGsgs~~a~~~Le~~y~~~ms~  157 (260)
                      +++++.++++|++++|.++ +||++++|++|+|+ +|.|+||++||+|++.+++ ++++|+|+.+++++||+.|+++||+
T Consensus        80 ~~~~~~la~~l~~~l~~~~~~p~~v~~li~G~d~~~g~~~L~~~D~~G~~~~~~~~~~~G~g~~~a~~~l~~~~~~~ms~  159 (204)
T d1rypj_          80 AIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEP  159 (204)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred             CCcchHHHHHHHHHHHhhcccceeeeEEEEEEecCCCcceEEEeCCCCccccccCcEEeecchHHHHHHHHhccccCCCH
Confidence            9999999999999998764 59999999999995 5669999999999999875 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEE
Q psy15384        158 KEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVS  194 (260)
Q Consensus       158 eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~  194 (260)
                      +||++++++||..+.++|..++++++|++|+++| ++
T Consensus       160 ~ea~~l~~~al~~a~~~d~~sg~~~~v~ii~kdg-~~  195 (204)
T d1rypj_         160 EDLFETISQALLNAADRDALSGWGAVVYIIKKDE-VV  195 (204)
T ss_dssp             HHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSC-EE
T ss_pred             HHHHHHHHHHHHHHHHhcCccCCeEEEEEEECCc-eE
Confidence            9999999999999999999999999999999999 54

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.1e-44  Score=313.58  Aligned_cols=183  Identities=17%  Similarity=0.218  Sum_probs=172.5

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|+|.+.      .++..++.+|||+|++||+|++||+.+|++.++++++.+++.|+++++++
T Consensus        32 ~G~t~VGik~~dgVvlaad~~~~~------~~~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~g~~  105 (245)
T d1irug_          32 NSSTAIGIRCKDGVVFGVEKLVLS------KLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYN  105 (245)
T ss_dssp             TSCCEEEEECSSBEEEEEEEECSC------TTBCTTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCcEEEEEeCCEEEEEEeccccc------cccccCccceEEEcCCCEEEEeccCchhHHHHHHHHHHHHHHHHHHhCCC
Confidence            699999999999999999999887      44568889999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhcc-----CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384         82 IPVICPVTMIKQTLYKYH-----GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS  156 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~~-----~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms  156 (260)
                      ++++.++++|++++++|.     +||++++||||+|++++|+||++||+|++.+++++|+|+|+..++++||+.|+++||
T Consensus       106 i~~~~la~~la~~~~~~t~~~~~rP~~vs~li~G~D~~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~dmt  185 (245)
T d1irug_         106 IPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMT  185 (245)
T ss_dssp             CCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCGGGCC
T ss_pred             CCHHHHHHHHHHHHHHhhccccccccceEEEEEEEcCCCCceEEEEcCCceEEeeeEEEECCccHHHHHHHHhhcCCCCC
Confidence            999999999999887652     499999999999987779999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcC
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKN  190 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~  190 (260)
                      .+||++++.+||+.+..++..++.+|||++|+++
T Consensus       186 ~eea~~l~~~~l~~~~~~~~~~~~~iei~~v~~~  219 (245)
T d1irug_         186 CRDIVKEVAKIIYIVHDEVKDKAFELELSWVGEL  219 (245)
T ss_dssp             HHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTT
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCceEEEEEEEec
Confidence            9999999999999998887777889999999885

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.6e-44  Score=310.85  Aligned_cols=204  Identities=15%  Similarity=0.235  Sum_probs=184.2

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|++.++     +.++...+++||++|++|++|++||+.+|++.+++.++.+++.|+++++++
T Consensus        27 ~G~tvIgik~~dgVvlaad~~~~~-----~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~  101 (241)
T d1rypd_          27 RGTCAVGVKGKNCVVLGCERRSTL-----KLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDP  101 (241)
T ss_dssp             TSCCEEEEECSSCEEEEEECCCSS-----CCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCCEEEEEeCCEEEEEEEccccc-----cCcccccccccEEEeCCCEEEEeeeccchHHHHHHHHHHHHHHHHHHcCCC
Confidence            699999999999999999999999     788888899999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeC-CCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCC--
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDS-AGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKE--  153 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~-~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~--  153 (260)
                      ++++.+++.++.+++++     .+||++++||||+|+ +++|+||++||+|++.+++++|+|+|+..++++||++|++  
T Consensus       102 i~~~~la~~i~~~~~~~t~~~~~rP~~v~~li~G~d~~~~~p~Ly~idp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~  181 (241)
T d1rypd_         102 VTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKE  181 (241)
T ss_dssp             CCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTS
T ss_pred             CCHHHHHHHHHHHHHHHhhccccCcccceEEEEEEccccCcceEEEecCCEEEEeeCeEEECcCHHHHHHHHHHhhhccc
Confidence            99999999999998765     359999999999996 4569999999999999999999999999999999999964  


Q ss_pred             -CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCccccCCCCcccccccCCCCCcceeeeeeeecccc
Q psy15384        154 -NLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVLSDRMPKCVQCIIPLGTTKVLSTQVIPIEKK  232 (260)
Q Consensus       154 -~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~  232 (260)
                       +||++||+++|++||+.+..+   ++.+++|++++++++++.+                     +.+++++++.+|+.+
T Consensus       182 ~~~t~~e~i~lal~al~~~~~~---~~~~iei~ii~~d~~~~~l---------------------~~~ei~~~l~~i~~~  237 (241)
T d1rypd_         182 PPATVEECVKLTVRSLLEVVQT---GAKNIEITVVKPDSDIVAL---------------------SSEEINQYVTQIEQE  237 (241)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHCS---CSTTEEEEEEETTTEEEEC---------------------CHHHHHHHHHHHTHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhcC---CCCcEEEEEEECCCCEEEC---------------------CHHHHHHHHHHHHHH
Confidence             699999999999999998754   4679999999998767777                     455566666666554


Q ss_pred             cc
Q psy15384        233 PS  234 (260)
Q Consensus       233 ~~  234 (260)
                      +.
T Consensus       238 ~~  239 (241)
T d1rypd_         238 KQ  239 (241)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-43  Score=301.96  Aligned_cols=189  Identities=22%  Similarity=0.261  Sum_probs=178.1

Q ss_pred             CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCC-
Q psy15384          1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAH-   79 (260)
Q Consensus         1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-   79 (260)
                      .+|||+|||+++||||||+|+|.+.     |.++..++++||++|++|+++++||..+|++.+.++++.+++.|++.++ 
T Consensus         7 ~nG~Tivgi~~~dgVviaaD~r~s~-----~~~i~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~   81 (222)
T d1ryp1_           7 DNGGTILGIAGEDFAVLAGDTRNIT-----DYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHND   81 (222)
T ss_dssp             CCCCEEEEEECSSCEEEEEECCEEE-----TTEEEESCCCCCEECSTTCEEEEEESHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCcEEEEEEECCEEEEEECCCccc-----CCEeccCCcceEEEecCCEEEEeccChHHHHHHHHHHHHHhhhhhhhcCC
Confidence            3799999999999999999999999     8999999999999999999999999999999999999999999988765 


Q ss_pred             CCCChHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccC------
Q psy15384         80 TDIPVICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWK------  152 (260)
Q Consensus        80 ~~i~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~------  152 (260)
                      ..+++..++++++..+++++ +||++++||+|+|++|+|+||.+||+|++.+++++|+|+|+.+|+++||+.|+      
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~Ly~~D~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~~  161 (222)
T d1ryp1_          82 KKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYE  161 (222)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBC
T ss_pred             CCCcHHHHHHHHHHHHHhhhhhhheeeeeEEEEeCCCCeEEEEECCCcEEEEeceEEEcccHHHHHHHHHHhhccccccC
Confidence            56788999999988887654 69999999999999988999999999999999999999999999999999987      


Q ss_pred             -----------CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEE
Q psy15384        153 -----------ENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSS  195 (260)
Q Consensus       153 -----------~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~  195 (260)
                                 ++||++||++++++||..+.++|..++++++|++|++|| ++.
T Consensus       162 ~~~~~~~~~~~~~lt~~ea~~l~~~al~~a~~rd~~sg~~v~v~iitkdG-v~~  214 (222)
T d1ryp1_         162 PGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDG-VRK  214 (222)
T ss_dssp             TTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE-EEE
T ss_pred             cccchhhhcccccccHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEeCCC-EEE
Confidence                       689999999999999999999999999999999999999 664

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-43  Score=307.78  Aligned_cols=192  Identities=20%  Similarity=0.160  Sum_probs=178.1

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|++.++     + +  ..+.+|||.|++|++|++||..+|++.++++++.+++.|+++++++
T Consensus        30 ~g~t~igi~~~dgvvlaad~~~~~-----~-l--~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~  101 (233)
T d1rypf_          30 QGSVTVGLRSNTHAVLVALKRNAD-----E-L--SSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRK  101 (233)
T ss_dssp             TSCCEEEEECSSEEEEEEECCCSS-----T-T--BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             cCCCEEEEEECCeEEEEEeccccc-----c-C--CcchheEEEcCCCEEEEEeeccccHHHHHHHHHHHHHhhhhhcCCC
Confidence            699999999999999999999987     3 3  3567899999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhcc----C
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGW----K  152 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y----~  152 (260)
                      ++++.+++.|+++++++     ++||++++||||+|++| |+||++||+|++.+++++|+|+|+..++++||+.|    +
T Consensus       102 i~~~~la~~l~~~~~~~t~~~~~RP~gv~~il~G~d~~g-~~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~  180 (233)
T d1rypf_         102 LAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSG-AHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIK  180 (233)
T ss_dssp             CCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTE-EEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHHHhcccccCCccceEEEEEEcCCC-CEEEEEccccceecccEEEecCchHHHHHHHHHHHhhccc
Confidence            99999999999988643     35999999999999887 99999999999999999999999999999999865    6


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384        153 ENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL  202 (260)
Q Consensus       153 ~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~  202 (260)
                      ++|+++||++++++||+.++.+|..+++++||++|+++++++++.+.+++
T Consensus       181 ~dms~eeai~l~~~~l~~~~~~d~~~~~~iev~ii~k~~~~~~l~~~ei~  230 (233)
T d1rypf_         181 IDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVA  230 (233)
T ss_dssp             CCSCHHHHHHHHHHHHTTSCCSSCCCTTTEEEEEEETTEEEEEEEGGGGG
T ss_pred             cCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEECCCCeEECCHHHHH
Confidence            79999999999999999999999889999999999999878988777664

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-43  Score=309.85  Aligned_cols=192  Identities=18%  Similarity=0.216  Sum_probs=175.3

Q ss_pred             cceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCC
Q psy15384          3 GTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDI   82 (260)
Q Consensus         3 Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i   82 (260)
                      |+|+|||+++||||||+|+|.+.      .++..++++|||+|++||+|++||+.+|++.+++.++.+++.|++.+++++
T Consensus        35 g~t~igIk~~dgVVlaad~r~~~------~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~  108 (244)
T d1irua_          35 GLTSVAVRGKDCAVIVTQKKVPD------KLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEI  108 (244)
T ss_dssp             CCEEEEEECSSEEEEEEECCCCC------SSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             CccEEEEEcCCEEEEEEeccccc------ccccCCccceEEEecCCcEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            57999999999999999999876      556677899999999999999999999999999999999999999999999


Q ss_pred             ChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccC--CCC
Q psy15384         83 PVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWK--ENL  155 (260)
Q Consensus        83 ~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~--~~m  155 (260)
                      +++.+++.++.+++++     .+||++++||||||++++|+||++||+|++.+++++|+|+|+..++++||++|+  ++|
T Consensus       109 ~v~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~D~~~g~~Ly~~Dp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~d~  188 (244)
T d1irua_         109 PVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDW  188 (244)
T ss_dssp             CHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCCC
T ss_pred             CchHHHHHHHHHHHHHhcccccCccceeeEEEEEcCCCCcEEEEEcCCccEEecceEeccCchhHHHHHHHhccccccCC
Confidence            9999999999887653     369999999999998767999999999999999999999999999999999995  589


Q ss_pred             CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCC-cEEEccCccc
Q psy15384        156 SEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNG-QVSSYKPYKV  201 (260)
Q Consensus       156 s~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g-~~~~l~~~~~  201 (260)
                      +++||++++++||+.++.+|.. ++++||+||++++ +++++.+.++
T Consensus       189 t~eeai~l~~~~l~~~~~~d~~-~~~iev~ii~~~~~~~~~l~~~ei  234 (244)
T d1irua_         189 TFEQTVETAITCLSTVLSIDFK-PSEIEVGVVTVENPKFRILTEAEI  234 (244)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCC-TTSEEEEEEETTEEEEEECCHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCCC-CCcEEEEEEEeCCCcEEECCHHHH
Confidence            9999999999999999999975 5789999999987 3677744443

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2.6e-43  Score=307.87  Aligned_cols=190  Identities=21%  Similarity=0.265  Sum_probs=174.9

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|+|.++     |. ...++++|||+|++|++|++||..+|++.+++.++.+++.|+++++.+
T Consensus        30 ~G~t~Igik~~dgVvlaad~r~~~-----~~-~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~  103 (243)
T d1j2pa_          30 RGATAIGIKCKEGVILIADKRVGS-----KL-LEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIP  103 (243)
T ss_dssp             TSCCEEEEEETTEEEEEEECCCSC-----TT-BCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred             cCCCEEEEEECCEEEEEEecCccc-----cC-ccccccccEeecCCcEEEEeeecccHHHHHHHHHHHHHHHHHHhhCCC
Confidence            699999999999999999999998     55 456789999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS  156 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms  156 (260)
                      ++++.+++.++..++.+     .+||++++|+||+|. + |+||++||+|++.+++++|+|+|+..++++||+.|+++||
T Consensus       104 ~~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~D~-~-p~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~y~~~ms  181 (243)
T d1j2pa_         104 ITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNE-V-PKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLS  181 (243)
T ss_dssp             CCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEESS-S-EEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred             CcHHHHHHHHHHHHHHHhhhccCCccceeEEEEEecC-C-ceEEEEeccCceeeeeEEEeCCCcHHHHHHHHhhcccCCC
Confidence            99999999999988753     359999999999984 3 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCC-cEEEccCcc
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNG-QVSSYKPYK  200 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g-~~~~l~~~~  200 (260)
                      ++||++++++||+.++.+|.. +++|||+++++++ +++.+.+.+
T Consensus       182 ~eeai~la~~~l~~~~~~d~~-~~~iei~iv~~~~~~~~~l~~~e  225 (243)
T d1j2pa_         182 FDDAMVLGLVAMGLSIESELV-PENIEVGYVKVDDRTFKEVSPEE  225 (243)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCC-GGGEEEEEEETTTCCCEECCHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccC-CCceEEEEEEeCCCcEEECCHHH
Confidence            999999999999999999975 5799999999864 377774443

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-43  Score=308.05  Aligned_cols=191  Identities=19%  Similarity=0.180  Sum_probs=173.2

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|+|.++     +..   .+.+||++|++||+||+||+.+|++.+++.++.+++.|+++++++
T Consensus        28 ~G~t~vgik~~dgVvlaad~~~~~-----~~~---~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   99 (238)
T d1iruf_          28 QGSATVGLKSKTHAVLVALKRAQS-----ELA---AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRP   99 (238)
T ss_dssp             HSCCEEEEECSSEEEEEEECCCSS-----TTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCCEEEEEeCCEEEEEEeccccc-----CCC---CccceEEEeCCceEEEEeccchHHHHHHHHHHHHHHHHHHHcCCC
Confidence            599999999999999999999998     443   246899999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCC-
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENL-  155 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~m-  155 (260)
                      ++++.+++.|+...++|     .+||++++||||||++| |+||++||+|++.+++++|+|+|+..++++||++|+++| 
T Consensus       100 i~~~~l~~~l~~~~~~y~~~~~~rP~~v~~il~G~D~~g-p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Lek~~~~~~~  178 (238)
T d1iruf_         100 LPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMG-PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME  178 (238)
T ss_dssp             CCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTE-EEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHHhhccCCCcccceEEEEEEcCCC-ceEEEEcCCCCEEeeeeEEECCCchhhHHHHHhhcccccC
Confidence            99999999998875543     35999999999999866 999999999999999999999999999999999999865 


Q ss_pred             -CHHHHHHHHHHHHHHHHhhcC-CCCCcEEEEEEEcCCcEEEccCccc
Q psy15384        156 -SEKEGLTLMVDAIKAGILYDL-GSGSKVDVTIIRKNGQVSSYKPYKV  201 (260)
Q Consensus       156 -s~eeai~la~~al~~~~~~D~-~sg~~iev~vit~~g~~~~l~~~~~  201 (260)
                       +++||++++++||+.++.+|. .++.+|||++|+++++++++.+.++
T Consensus       179 ~~~~eav~lai~al~~~~~~~~~~~~~~iev~ii~k~~~~~~l~~~ei  226 (238)
T d1iruf_         179 CNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDV  226 (238)
T ss_dssp             CCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGG
T ss_pred             CCHHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEeCCCCEEECCHHHH
Confidence             899999999999999887654 4789999999999976888855544

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.9e-43  Score=302.93  Aligned_cols=192  Identities=17%  Similarity=0.251  Sum_probs=180.3

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+|+||||||+|+|.++     +. +..++.+|||+|++|++||++|..+|++.+++.++.+++.|+++++++
T Consensus        30 ~G~tvigik~~dgVvlaaD~r~~~-----~~-~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~  103 (233)
T d1irub_          30 GGAPSVGIKAANGVVLATEKKQKS-----IL-YDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEP  103 (233)
T ss_dssp             TSCCEEEEECSSCEEEEEECCCCC-----SS-BCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCCEEEEEeCCEEEEEEeCCccc-----CC-ccccccceEEEecCceEEEEeccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            699999999999999999999998     65 468889999999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCC
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLS  156 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms  156 (260)
                      ++++.+++.+++.++++     .+|++++++++|+|++| |+||++||.|++.+++++|+|+|+.+++++||+.|+++||
T Consensus       104 ~~~~~~~~~l~~~~~~~~~~~~~~p~~~~~li~g~d~~~-~~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms  182 (233)
T d1irub_         104 IPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGR-PYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLE  182 (233)
T ss_dssp             CCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSS-EEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred             CCHHHHHHHHHHHHHHHhhccccccceEEEeeeecccCC-ceEEEEcCCcceEeccceecCCcHHHHHHHHHhhcccCcc
Confidence            99999999999988654     25899999999999766 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384        157 EKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL  202 (260)
Q Consensus       157 ~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~  202 (260)
                      ++||++++++||+.++++|. ++++++|++|+++| ++++.|++++
T Consensus       183 ~eea~~l~~~~L~~~~~~d~-~~~~vev~ii~~~g-~~~l~~~eI~  226 (233)
T d1irub_         183 LEDAIHTAILTLKESFEGQM-TEDNIEVGICNEAG-FRRLTPTEVK  226 (233)
T ss_dssp             HHHHHHHHHHHHHTTCCSCC-CSSSEEEEEEETTE-EEECCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccC-CCCcEEEEEEeCCC-eEECCHHHHH
Confidence            99999999999999999998 46789999999999 9999877764

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-42  Score=289.49  Aligned_cols=193  Identities=17%  Similarity=0.239  Sum_probs=184.1

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+++||||||+|+|.+.     |.++.+++++||++|+++++++++|..+|++.+.++++.+++.|...++.+++
T Consensus         2 t~ivgi~~kdgVviaaD~r~~~-----g~~~~~~~~~Ki~~i~~~i~~~~~G~~aD~~~l~~~~~~~~~~~~~~~~~~~~   76 (199)
T d1iruk_           2 EYLIGIQGPDYVLVASDRVAAS-----NIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELS   76 (199)
T ss_dssp             CCEEEEECSSEEEEEEECCEEE-----TTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             eEEEEEEECCEEEEEECCCccC-----CCeeecCCcceEEEecCcEEEEecccchHHHHHHHHHHHHhhhhhhhcCCcCc
Confidence            7899999999999999999999     89999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhc---cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHH
Q psy15384         84 VICPVTMIKQTLYKY---HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEG  160 (260)
Q Consensus        84 v~~l~~~l~~~l~~~---~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eea  160 (260)
                      +..+++.+++.++.+   .+|++++++++|+|.+++|+||++||.|.+.+.+++|+|+|+.+++++|++.|+++|+++||
T Consensus        77 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~aG~d~~~~~~l~~~~~~g~~~~~~~~a~G~gs~~a~~~l~~~~~~~~~~~ea  156 (199)
T d1iruk_          77 PTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERA  156 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccCCcceeeeecceeccCCceEEeecccceEEeeeeeeecccchhhhHHHHHhccCCCCHHHH
Confidence            999999998877653   45999999999999987799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEEEccCcccc
Q psy15384        161 LTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVSSYKPYKVL  202 (260)
Q Consensus       161 i~la~~al~~~~~~D~~sg~~iev~vit~~g~~~~l~~~~~~  202 (260)
                      ++++++||..+.++|..++++++|++|+++| ++.+++..++
T Consensus       157 ~~l~~~al~~~~~~d~~sg~~~~v~vv~~~g-~~~~~~~~~~  197 (199)
T d1iruk_         157 VELLRKCLEELQKRFILNLPTFSVRIIDKNG-IHDLDNISFP  197 (199)
T ss_dssp             HHHHHHHHHHHHHTBCBCCCCEEEEEEETTE-EECCCCBCCC
T ss_pred             HHHHHHHHHHHHHhcCCcCCceEEEEEcCCC-eEEcCCccCC
Confidence            9999999999999999999999999999999 9988776654

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=1.5e-42  Score=298.03  Aligned_cols=191  Identities=19%  Similarity=0.196  Sum_probs=177.7

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+|+||||||+|+|.++     |+++..++++||++|++|++|+++|..+|++.+.++++.+++.|++.++.+++
T Consensus         1 TTivgi~~kdgVvlaaD~r~s~-----g~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   75 (224)
T d1q5qh_           1 TTIVALTYKGGVLLAGDRRATQ-----GNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLT   75 (224)
T ss_dssp             CCEEEEECSSCEEEEECCCEEE-----TTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CeEEEEEECCEEEEEECCCccc-----CCEeecCCcceEEEeCCcEEEEecccchHHHHHHHHHHHHhHHHHHhhCCCcc
Confidence            7999999999999999999999     99999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhcc----CcceeeEEEEEEe-----CCCCceEEEEeecceEEee--CEEEEcCChHHHHHHHHhccC
Q psy15384         84 VICPVTMIKQTLYKYH----GYLMCAFIIGGID-----SAGGNQLFSIFQHGSSHGH--KFCAMGTGLQPAMGILEAGWK  152 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~----~p~g~sliiaG~D-----~~g~p~Ly~idp~Gs~~~~--~~~aiGsgs~~a~~~Le~~y~  152 (260)
                      +..+++.++++++.++    +|+++.++++|+|     .+++|+||++||+|++..+  +|+|+|+|+.+|+++||++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~d~~~~~~l~~~d~~G~~~~~~~~~~a~GsG~~~a~~~Le~~~~  155 (224)
T d1q5qh_          76 FDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS  155 (224)
T ss_dssp             HHHHHHHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhhcccccCccceeeEEEeecccccccCCceEEEEEccCcEEEeccceeeecCccHHHHHHHHHhhc
Confidence            9999999999988663    4788888888887     3456999999999998765  789999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCCCCCc-------EEEEEEEcCCcEEEccCcc
Q psy15384        153 ENLSEKEGLTLMVDAIKAGILYDLGSGSK-------VDVTIIRKNGQVSSYKPYK  200 (260)
Q Consensus       153 ~~ms~eeai~la~~al~~~~~~D~~sg~~-------iev~vit~~g~~~~l~~~~  200 (260)
                      ++||++||++++++||+.++++|..||+.       +++++|+++| ++.+.+.+
T Consensus       156 ~~mt~~ea~~l~~~al~~a~~rD~~SGg~~~~~~~~~~~~~i~~~g-~~~l~~~e  209 (224)
T d1q5qh_         156 PDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG-AVHVSEET  209 (224)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE-EEECCHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhhccccCCcccccccceEEEEEeCCc-EEEcCHHH
Confidence            99999999999999999999999998874       8999999999 99884443

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-41  Score=287.91  Aligned_cols=188  Identities=23%  Similarity=0.282  Sum_probs=180.4

Q ss_pred             CCcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCC
Q psy15384          1 MTGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHT   80 (260)
Q Consensus         1 ~~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~   80 (260)
                      .+|||+|||+++||||||+|+|.+.     |.++..++++||++|++|++++++|..+|++.+.++++.+++.|++.++.
T Consensus         7 ~nG~Tivai~~~dgVviaaD~r~t~-----g~~~~~~~~~KI~~i~~~i~~~~aG~~~D~~~l~~~~~~~~~~~~~~~~~   81 (213)
T d1iru1_           7 FNGGTILAIAGEDFAIVASDTRLSE-----GFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNK   81 (213)
T ss_dssp             CCCCEEEEEEETTEEEEEEECCEEE-----TTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCcEEEEEEECCEEEEEECCcccc-----CceeeccccCEEEEcCCCEEEEecCccchHHHHHHHHHHHHHHHHHhhCC
Confidence            3799999999999999999999999     89999999999999999999999999999999999999999999999999


Q ss_pred             CCChHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccC-------
Q psy15384         81 DIPVICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWK-------  152 (260)
Q Consensus        81 ~i~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~-------  152 (260)
                      ++++..+++++++.++.++ .|++++++++|+|.+|+|+||.+||.|++.+++++|+|+|+.+|+++||+.|+       
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~l~~~d~~g~~~~~~~~a~G~g~~~a~~~l~~~~~~~~~~~~  161 (213)
T d1iru1_          82 AMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNV  161 (213)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSC
T ss_pred             chhHHHHHHHHHHHHHHHHhhhcccccceEEEecCCCcEEEecCCcceeeecCeeeecCccHHHHHHHHHhhcccchhcc
Confidence            9999999999999999875 48999999999999888999999999999999999999999999999998764       


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCCcEE
Q psy15384        153 --ENLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNGQVS  194 (260)
Q Consensus       153 --~~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g~~~  194 (260)
                        ++||++||++++++||..+.++|..++++++|++|+++| ++
T Consensus       162 ~~~~~s~~ea~~~~~~~l~~~~~~d~~sg~~~~v~~i~k~G-~~  204 (213)
T d1iru1_         162 EHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG-IR  204 (213)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTE-EE
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-EE
Confidence              689999999999999999999999999999999999999 65

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6e-42  Score=299.45  Aligned_cols=183  Identities=22%  Similarity=0.244  Sum_probs=171.0

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTD   81 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (260)
                      +|+|+|||+++||||||+|+|.++     |.++ ..+.+||++|++|++||+||+.+|++.+++.++.+++.|++.++++
T Consensus        29 ~G~t~igik~~dgVvlaad~~~~~-----~~~~-~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~  102 (244)
T d1rypg_          29 NGTTSIGIKCNDGVVFAVEKLITS-----KLLV-PQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTP  102 (244)
T ss_dssp             TSCCEEEEEETTEEEEEEEEECCC-----TTBC-TTTSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCCEEEEEeCCEEEEEEecccCC-----CCcc-ccccceEEEccCceEEEEccchhhHHHHHHHHHHHHHHHHHhcCCC
Confidence            599999999999999999999998     6554 5567899999999999999999999999999999999999999999


Q ss_pred             CChHhHHHHHHHHHHhc-----cCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHh---ccCC
Q psy15384         82 IPVICPVTMIKQTLYKY-----HGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEA---GWKE  153 (260)
Q Consensus        82 i~v~~l~~~l~~~l~~~-----~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~---~y~~  153 (260)
                      ++++.+++.+++++++|     .+||++++||||||++| |+||++||+|++.+++++|+|+|+..++++||+   .|++
T Consensus       103 ~~~~~la~~~~~~~~~~t~~~~~RP~~~~~iiaG~D~~g-p~Ly~idp~Gs~~~~~~~a~G~gs~~~~~~Lek~~~~~~~  181 (244)
T d1rypg_         103 IPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNG-AHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPE  181 (244)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTE-EEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHHHHHHHHhhcccccCCceEEEEEEEEeCCC-CEEEEEcCCccEEecCeEecCCccHHHHHHHHHHHhhCCC
Confidence            99999999999998765     25999999999999876 999999999999999999999999999999996   6999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEEcCC
Q psy15384        154 NLSEKEGLTLMVDAIKAGILYDLGSGSKVDVTIIRKNG  191 (260)
Q Consensus       154 ~ms~eeai~la~~al~~~~~~D~~sg~~iev~vit~~g  191 (260)
                      +||++||++++++||+.+.+++..++.+++|.+|+.++
T Consensus       182 ~mt~eeai~la~~~L~~~~~~~~~~~~~iev~ii~~~~  219 (244)
T d1rypg_         182 GLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSE  219 (244)
T ss_dssp             CCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTT
T ss_pred             CCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEEEc
Confidence            99999999999999999998888888899999998643

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=2e-41  Score=293.32  Aligned_cols=188  Identities=15%  Similarity=0.227  Sum_probs=161.7

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCC-
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHT-   80 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~-   80 (260)
                      +|||+|||+|+||||||+|+|.++             .+||++|++||+||+||+.+|++.++++++.+++.|+++++. 
T Consensus        18 ~GtT~vgi~~~~GVvlaad~r~~s-------------~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~   84 (227)
T d1q5qa_          18 RGRSVVVLTFRDGVLFVAENPSTA-------------LHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRR   84 (227)
T ss_dssp             TSCCEEEEECSSEEEEEECCSCSS-------------SCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred             cCCCEEEEEECCEEEEEEccCCCC-------------cceEEEecCceEEEecCchHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            699999999999999999999876             689999999999999999999999999999999999999885 


Q ss_pred             CCChHhHHHHHHHHH----HhccCcceeeEEEEEEeCC---CCceEEEEeecceEEeeC-EEEEcCChHHHHHHHHhccC
Q psy15384         81 DIPVICPVTMIKQTL----YKYHGYLMCAFIIGGIDSA---GGNQLFSIFQHGSSHGHK-FCAMGTGLQPAMGILEAGWK  152 (260)
Q Consensus        81 ~i~v~~l~~~l~~~l----~~~~~p~g~sliiaG~D~~---g~p~Ly~idp~Gs~~~~~-~~aiGsgs~~a~~~Le~~y~  152 (260)
                      +++++.+++.+++++    +++.+||++++||||||..   ++|+||++||+|++.+++ +++.|+++..++++|+++|+
T Consensus        85 ~~~~~~la~~~~~~~~~~~~~~~rP~gvs~lvaG~D~~g~~~~p~Ly~vDpsG~~~~~~~~~~~g~~s~~~~~~Le~~y~  164 (227)
T d1q5qa_          85 DVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYR  164 (227)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEEecCCCCCCCEEEEEccccceeeecccccCCCchHHHHHHHHHhcc
Confidence            588888888887763    3345799999999999963   359999999999998776 56677789999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCC----CCCcEEEEEEEcCCc---EEEccCcccc
Q psy15384        153 ENLSEKEGLTLMVDAIKAGILYDLG----SGSKVDVTIIRKNGQ---VSSYKPYKVL  202 (260)
Q Consensus       153 ~~ms~eeai~la~~al~~~~~~D~~----sg~~iev~vit~~g~---~~~l~~~~~~  202 (260)
                      ++||++||+++|++||+.++.+|..    .+.++||+|++++++   |+.+.+.+++
T Consensus       165 ~~ms~eea~~la~~aL~~a~~~d~~~~~~~~~~ievavi~k~~~~~~fr~l~~~ei~  221 (227)
T d1q5qa_         165 ADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALE  221 (227)
T ss_dssp             TTCCHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCEEECCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhhcccccCCcCcceEEEEEEECCCCccceEEcCHHHHH
Confidence            9999999999999999999988743    467899999998863   7777555543

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

Probab=99.96  E-value=1.3e-30  Score=216.15  Aligned_cols=174  Identities=17%  Similarity=0.078  Sum_probs=138.4

Q ss_pred             CcceEEEEEeCCEEEEEEeCCCcccCCCCCceeecc-CcCceEEecCe-EEEEecCChhHHHHHHHHHHHHHhhcCCCCC
Q psy15384          2 TGTTICGLLYEDGVILGADTRATMKDASGSSILIDH-NCSKINRLSEK-IYCCGAGSAADMKRLSGLVEANLECQFPKAH   79 (260)
Q Consensus         2 ~Gttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~-~~~KI~~I~~~-i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~   79 (260)
                      +|||+|||+|+||||||||+|+|+     |+++..+ ..+|++.++++ ++++++|..+|.+.+.+.++.+.+.+.....
T Consensus         4 ~GTTivai~~~dGVvlAaDtR~S~-----G~~i~~~~~~~ki~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   78 (180)
T d2z3ba1           4 HATTIFAVQHKGRSAMSGDGQVTF-----GQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLK   78 (180)
T ss_dssp             CCCCEEEEEETTEEEEEECCCEEE-----TTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred             CCeEEEEEEECCEEEEEECCcccC-----CceeEecccceEEEEecccceecccchHHHHHHHHHHHHHHHHHhhccccc
Confidence            799999999999999999999999     8877766 58999999774 8888899999999999999988877764433


Q ss_pred             CCCChHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHH
Q psy15384         80 TDIPVICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKE  159 (260)
Q Consensus        80 ~~i~v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~ee  159 (260)
                      ...........+..+++++..++......+|++..+ ++++..++.|      |.|+|||+.+|+++||+.|+++||.+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~a~GSGs~~A~g~l~~~~~~~~s~~e  151 (180)
T d2z3ba1          79 RAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSG-TGEVIEPDDG------ILAIGSGGNYALAAGRALKKHAGESMS  151 (180)
T ss_dssp             HHHHHHHHHHHHCTTGGGCCCCEEEECSSCEEEECT-TCCEECCSSS------EEEESTTHHHHHHHHHHHHHHHGGGCC
T ss_pred             hhHHHHHHHHhHHHHHHHhhcceeeeeccccccccC-Cceeeccccc------EEEEcCchHHHHHHHHHHhhcCCCccC
Confidence            222222222222222333334555555566666555 6666666665      789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384        160 GLTLMVDAIKAGILYDLGSGSKVDVTII  187 (260)
Q Consensus       160 ai~la~~al~~~~~~D~~sg~~iev~vi  187 (260)
                      |++|+++||+.+.++|.+++++++|.+|
T Consensus       152 A~~l~~~Al~~A~e~dvyT~~~~~~~~i  179 (180)
T d2z3ba1         152 ASEIARAALETAGEICVYTNDQIILEEL  179 (180)
T ss_dssp             HHHHHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred             HHHHHHHHHHHHHhhcEEcCCcEEEEEe
Confidence            9999999999999999999999999887

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=2.6e-28  Score=200.12  Aligned_cols=170  Identities=13%  Similarity=0.036  Sum_probs=137.8

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCeEEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEKIYCCGAGSAADMKRLSGLVEANLECQFPKAHTDIP   83 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   83 (260)
                      ||+|||+|+||||||+|+|+|.     |+++.+++++||++|+++++++++|..+|.+.+...+..+...+.....    
T Consensus         1 TTivav~~~~gVviAaDtR~S~-----G~~i~~r~~~Ki~~i~~~~~~~~~g~~ad~~~~~~~~~~~~~~~~~~~~----   71 (171)
T d1m4ya_           1 TTILVVRRNGQTVMGGDGQVTF-----GSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGNL----   71 (171)
T ss_dssp             CCEEEEEETTEEEEEECCCEEE-----TTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTCH----
T ss_pred             CeEEEEEECCEEEEEECCCccc-----CCEEEeCCcceEEEecCCcEEEEEeechhhHHHHHHHHHHHHHHhhccc----
Confidence            7999999999999999999999     9999999999999999999999999999999999888877776654332    


Q ss_pred             hHhHHHHHHHHHHhccCcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccC-CCCCHHHHHH
Q psy15384         84 VICPVTMIKQTLYKYHGYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWK-ENLSEKEGLT  162 (260)
Q Consensus        84 v~~l~~~l~~~l~~~~~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~-~~ms~eeai~  162 (260)
                       .......+..+..+.-++....++.+.+. ++|+++..|+.|.....++.|+|||+.+|+++|+..|+ ++|+   |.+
T Consensus        72 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~l~~~~~~~~~~---a~e  146 (171)
T d1m4ya_          72 -TKAAVELAKDWRTDRVLRRLEALLLVADK-ENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLS---ARE  146 (171)
T ss_dssp             -HHHHHHHHHHHHHCTTGGGCCCEEEEECS-SCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCC---HHH
T ss_pred             -hhhHHHHHHHHHHhhhhcccccccceecC-CcceEEecCCceeeecCCEEEEcchHHHHHHHHHhhccCCCCC---HHH
Confidence             22222222233322222333344445554 45999999999999999999999999999999998765 5675   777


Q ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384        163 LMVDAIKAGILYDLGSGSKVDVTII  187 (260)
Q Consensus       163 la~~al~~~~~~D~~sg~~iev~vi  187 (260)
                      ++++||+.+.++|.++|++++|..|
T Consensus       147 l~~~Ai~~A~e~dvyTg~~~~i~~~  171 (171)
T d1m4ya_         147 IVEKAMTIAGEICIYTNQNIVIEEV  171 (171)
T ss_dssp             HHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred             HHHHHHHHHHhhceEcCCcEEEEEC
Confidence            9999999999999999999998753

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

Probab=99.95  E-value=1.5e-27  Score=195.96  Aligned_cols=170  Identities=16%  Similarity=0.145  Sum_probs=133.1

Q ss_pred             ceEEEEEeCCEEEEEEeCCCcccCCCCCceeeccCcCceEEecCe-EEEEecCChhHHHHHHHHHHHHHhhcCCCCCCCC
Q psy15384          4 TTICGLLYEDGVILGADTRATMKDASGSSILIDHNCSKINRLSEK-IYCCGAGSAADMKRLSGLVEANLECQFPKAHTDI   82 (260)
Q Consensus         4 ttivgi~~kdGVVlaaD~r~t~~~~~~g~li~~~~~~KI~~I~~~-i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i   82 (260)
                      ||+|||+|+||||||+|+|+|.     |+++.+++++||++|+++ ++++.+|...+.+.+.+..+.+.+.++.      
T Consensus         1 TTivai~~~dGVVlAaDtRaS~-----G~~i~~r~~~Ki~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   69 (173)
T d1g3ka_           1 TTIVSVRRNGQVVVGGDGQVSL-----GNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------   69 (173)
T ss_dssp             CCEEEEEETTEEEEEECCCEEE-----TTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------
T ss_pred             CeEEEEEECCEEEEEECCCccc-----CCEeEcCCcceEEEecCCcEEEEeeehhHhHHHHHHHHHHHHHhhcC------
Confidence            7999999999999999999999     999999999999999887 5556667666666666665555554432      


Q ss_pred             ChHhHHHHHHHHHHhcc-CcceeeEEEEEEeCCCCceEEEEeecceEEeeCEEEEcCChHHHHHHHHhccCCCCCHHHHH
Q psy15384         83 PVICPVTMIKQTLYKYH-GYLMCAFIIGGIDSAGGNQLFSIFQHGSSHGHKFCAMGTGLQPAMGILEAGWKENLSEKEGL  161 (260)
Q Consensus        83 ~v~~l~~~l~~~l~~~~-~p~g~sliiaG~D~~g~p~Ly~idp~Gs~~~~~~~aiGsgs~~a~~~Le~~y~~~ms~eeai  161 (260)
                      .....+..+...++..+ .+.... .+.+.|.++++.++..|+.|.+.+.++.|+|||+.+|++.|+.+|+  ++.+||.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~GSGs~~A~~~l~~~~~--~~~~~A~  146 (173)
T d1g3ka_          70 HLLKSAVELAKDWRTDRALRKLEA-MLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVE--NTELSAH  146 (173)
T ss_dssp             CHHHHHHHHHHHHHHSTTGGGCCC-EEEEECSSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHH--HCCCCHH
T ss_pred             cchhHHHHHHHHHHHhhhhccccc-ccccccCCCcceecccCceEEecCCCEEEecchHHHHHHHHHHhhh--cCCCCHH
Confidence            22233333444333332 233333 3445566667999999999999999999999999999999998885  4556799


Q ss_pred             HHHHHHHHHHHhhcCCCCCcEEEEEE
Q psy15384        162 TLMVDAIKAGILYDLGSGSKVDVTII  187 (260)
Q Consensus       162 ~la~~al~~~~~~D~~sg~~iev~vi  187 (260)
                      +++++||+.+.++|.+++++++|..|
T Consensus       147 ela~~Ai~~Aae~dvyTgd~~~i~~~  172 (173)
T d1g3ka_         147 EIVEKSLRIAGDICVFTNTNFTIEEL  172 (173)
T ss_dssp             HHHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred             HHHHHHHHHHHhhcEEcCCcEEEEEC
Confidence            99999999999999999999999876