Psyllid ID: psy15388

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQIDLTGIPDQVRLLGLPDKHTLSGIPDQVRLFIGLPDEHTLSGRPDRYT
Secondary Structure (PSIPRED)
ccEEEEEEEEEccEEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEccEEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHccHHHHHHHHcccEEEEEEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHcccccccEEEEcccEEEEEEEcccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHcHHHHHHHccHHHHHHcHcccccccccccccccccccccccccHHHEEEEEccccccccccccccc
Coil and Loop (DISEMBL)
MFLLTMIARVRDGLILsasmqddeysersTLEYQNQAKQLFRklnlnspaklsietgNYFFHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLefhgqyggqfeqctrpyafveFDSSIKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLgnqidltgipdqvrllglpdkhtlsgipdqvrlfiglpdehtlsgrpdryt
Flexible Loop (DISEMBL)
MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIKKLrksftdtrvrrnlntlntelqdvqRIMVQNIDDINATMNLVLGLGNQIDLTGIPDQVRLLGLPDKHTLSGIPDQVRLFiglpdehtlsgrpdryt
Low Complexity Region (SEG)
MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQIDLTGIPDQVRLLGLPDKHTLSGIPDQVRLFIGLPDEHTLSGRPDRYT
Disordered region (IsUnstruct)
**LLTMIARVRDGLIL**********************QLFRKLNLNSPAKLSIETGNYFFHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQIDLTGIPDQVRLLGLPDKHTLSGIPDQVRLFIGL**************
Disordered Region (DISOPRED)
MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLN******LSIETGNYFFHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIKKLRK****************ELQDVQRIMVQNIDDINATMNLVLGLG***************GLPDKHTLSGIPDQVRLFIGLPDEHTL********
Disordered Region (DISEMBL)
MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQIDLTGIPDQVRLLGLPDKHTLSGIPDQVRLFIGLPDEHTL********
Disordered Region (DISPRO)
MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQIDLTGIPDQVRLLGLPDKHTLSGIPDQVRLFIGLPDEHTL*G******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQIDLTGIPDQVRLLGLPDKHTLSGIPDQVRLFIGLPDEHTLSGRPDRYT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
Q6P7L4	215	Vesicle-trafficking prote	yes	N/A	0.718	0.725	0.589	3e-50
Q7SXP0	215	Vesicle-trafficking prote	yes	N/A	0.718	0.725	0.570	2e-49
Q5ZJW4	215	Vesicle-trafficking prote	yes	N/A	0.718	0.725	0.570	5e-49
Q4KM74	215	Vesicle-trafficking prote	yes	N/A	0.718	0.725	0.570	2e-48
Q5RAI9	215	Vesicle-trafficking prote	yes	N/A	0.718	0.725	0.570	2e-48
O08547	215	Vesicle-trafficking prote	yes	N/A	0.718	0.725	0.570	2e-48
O08595	215	Vesicle-trafficking prote	yes	N/A	0.718	0.725	0.564	1e-47
Q7ZV15	215	Vesicle-trafficking prote	no	N/A	0.718	0.725	0.557	8e-47
O75396	215	Vesicle-trafficking prote	yes	N/A	0.718	0.725	0.557	6e-46
Q9Y7L0	215	Protein transport protein	yes	N/A	0.691	0.697	0.444	1e-32

>sp|Q6P7L4|SC22B_XENTR Vesicle-trafficking protein SEC22b OS=Xenopus tropicalis GN=sec22b PE=2 SV=1

 Score =  198 bits (503), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 92/156 (58%), Positives = 120/156 (76%)

Query: 1   MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
           M LLTMIARV DGL L+ASMQ+DE S R   +YQNQAKQLFRKLN  SP + ++E G   
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQNQAKQLFRKLNEQSPTRCTLEAGAMT 60

Query: 61  FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
           FHYLI++GVC+L LCE  F  K+A++YLE L  EF  Q+G +    +RPY+F+EFD+ I+
Sbjct: 61  FHYLIEKGVCYLVLCEAAFPKKLAFAYLEDLFSEFDEQHGKKVPTVSRPYSFIEFDNYIQ 120

Query: 121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           K +KS+ D+R RRNL+++NTELQDVQRIMV NI+++
Sbjct: 121 KTKKSYIDSRARRNLSSVNTELQDVQRIMVANIEEV 156

SNARE involved in targeting and fusion of ER-derived transport vesicles with the Golgi complex as well as Golgi-derived retrograde transport vesicles with the ER.
Xenopus tropicalis (taxid: 8364)

>sp|Q7SXP0|S22BB_DANRE Vesicle-trafficking protein SEC22b-B OS=Danio rerio GN=sec22bb PE=2 SV=1

 Score =  195 bits (495), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/156 (57%), Positives = 120/156 (76%)

Query: 1   MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
           M LLTMIAR+ DGL L+ASMQ+DE   R   +YQ+QAKQLFRKLN  SP + ++E G+  
Sbjct: 1   MVLLTMIARLADGLPLAASMQEDEQMGRDLQQYQSQAKQLFRKLNEQSPNRCTLEAGSMS 60

Query: 61  FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
           FHY+I++GVC+L LCE  F  K+A++YLE L  EFH Q+G +    +RPY+F+EFD+ I+
Sbjct: 61  FHYVIEKGVCYLVLCEAGFPKKLAFAYLEDLQAEFHEQHGKKVPTVSRPYSFIEFDTYIQ 120

Query: 121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           K +KS+ D+R RRNL+ +NTELQDVQRIMV NI+++
Sbjct: 121 KTKKSYIDSRARRNLSNINTELQDVQRIMVANIEEV 156

SNARE involved in targeting and fusion of ER-derived transport vesicles with the Golgi complex as well as Golgi-derived retrograde transport vesicles with the ER.

Danio rerio (taxid: 7955)

>sp|Q5ZJW4|SC22B_CHICK Vesicle-trafficking protein SEC22b OS=Gallus gallus GN=SEC22B PE=2 SV=1

 Score =  194 bits (492), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 89/156 (57%), Positives = 118/156 (75%)

Query: 1   MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
           M LLTMIARV DGL L+ASMQ+DE S R   +YQ+QAKQLFRKLN  SP + ++E G   
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMA 60

Query: 61  FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
           FHY+I++GVC+L LCE  F  K+A++YLE L  EF  Q+G +    +RPY+F+EFD+ I+
Sbjct: 61  FHYIIEKGVCYLVLCEAAFPKKLAFAYLEDLQSEFDEQHGKKVPTVSRPYSFIEFDTYIQ 120

Query: 121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           K +K + D+R RRNL ++NTELQDVQRIMV NI+++
Sbjct: 121 KTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEV 156

SNARE involved in targeting and fusion of ER-derived transport vesicles with the Golgi complex as well as Golgi-derived retrograde transport vesicles with the ER.

Gallus gallus (taxid: 9031)

>sp|Q4KM74|SC22B_RAT Vesicle-trafficking protein SEC22b OS=Rattus norvegicus GN=Sec22b PE=1 SV=3

 Score =  192 bits (487), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 89/156 (57%), Positives = 118/156 (75%)

Query: 1   MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
           M LLTMIARV DGL L+ASMQ+DE S R   +YQ+QAKQLFRKLN  SP + ++E G   
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 60

Query: 61  FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
           FHY+I++GVC+L LCE  F  K+A++YLE L  EF  Q+G +    +RPY+F+EFD+ I+
Sbjct: 61  FHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQ 120

Query: 121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           K +K + D+R RRNL ++NTELQDVQRIMV NI+++
Sbjct: 121 KTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEV 156

SNARE involved in targeting and fusion of ER-derived transport vesicles with the Golgi complex as well as Golgi-derived retrograde transport vesicles with the ER.

Rattus norvegicus (taxid: 10116)

>sp|Q5RAI9|SC22B_PONAB Vesicle-trafficking protein SEC22b OS=Pongo abelii GN=SEC22B PE=2 SV=3

 Score =  192 bits (487), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 89/156 (57%), Positives = 118/156 (75%)

Query: 1   MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
           M LLTMIARV DGL L+ASMQ+DE S R   +YQ+QAKQLFRKLN  SP + ++E G   
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 60

Query: 61  FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
           FHY+I++GVC+L LCE  F  K+A++YLE L  EF  Q+G +    +RPY+F+EFD+ I+
Sbjct: 61  FHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQ 120

Query: 121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           K +K + D+R RRNL ++NTELQDVQRIMV NI+++
Sbjct: 121 KTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEV 156

SNARE involved in targeting and fusion of ER-derived transport vesicles with the Golgi complex as well as Golgi-derived retrograde transport vesicles with the ER.

Pongo abelii (taxid: 9601)

>sp|O08547|SC22B_MOUSE Vesicle-trafficking protein SEC22b OS=Mus musculus GN=Sec22b PE=1 SV=3

 Score =  192 bits (487), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 89/156 (57%), Positives = 118/156 (75%)

Query: 1   MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
           M LLTMIARV DGL L+ASMQ+DE S R   +YQ+QAKQLFRKLN  SP + ++E G   
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 60

Query: 61  FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
           FHY+I++GVC+L LCE  F  K+A++YLE L  EF  Q+G +    +RPY+F+EFD+ I+
Sbjct: 61  FHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQ 120

Query: 121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           K +K + D+R RRNL ++NTELQDVQRIMV NI+++
Sbjct: 121 KTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEV 156

SNARE involved in targeting and fusion of ER-derived transport vesicles with the Golgi complex as well as Golgi-derived retrograde transport vesicles with the ER.

Mus musculus (taxid: 10090)

>sp|O08595|SC22B_CRIGR Vesicle-trafficking protein SEC22b OS=Cricetulus griseus GN=Sec22b PE=1 SV=3

 Score =  189 bits (480), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 88/156 (56%), Positives = 117/156 (75%)

Query: 1   MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
           M LLTMIARV DGL L+ASMQ+DE S R   +YQ+QAKQLFRKLN  SP + ++  G   
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLGAGAMT 60

Query: 61  FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
           FHY+I++GVC+L LCE  F  K+A++YLE L  EF  Q+G +    +RPY+F+EFD+ I+
Sbjct: 61  FHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQ 120

Query: 121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           K +K + D+R RRNL ++NTELQDVQRIMV NI+++
Sbjct: 121 KTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEV 156

SNARE involved in targeting and fusion of ER-derived transport vesicles with the Golgi complex as well as Golgi-derived retrograde transport vesicles with the ER.

Cricetulus griseus (taxid: 10029)

>sp|Q7ZV15|S22BA_DANRE Vesicle-trafficking protein SEC22b-A OS=Danio rerio GN=sec22ba PE=2 SV=1

 Score =  186 bits (473), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 87/156 (55%), Positives = 114/156 (73%)

Query: 1   MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
           M L TMI RV D L L+ASMQ+DE S R   +YQ+QAKQL RKLN  SPA+ ++E G   
Sbjct: 1   MVLQTMIVRVADSLPLAASMQEDEQSGRDLQKYQSQAKQLCRKLNEQSPARCTLEAGKMC 60

Query: 61  FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
           FHY+I++GVC+LALCE  F  K+A++YLE L  EF  QYG +    +RPY+F+EFD+ I+
Sbjct: 61  FHYVIEKGVCYLALCEAGFPKKLAFAYLEDLEGEFSEQYGAKVPSVSRPYSFIEFDTYIQ 120

Query: 121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           K  KS+ D+R RRNL  +N+EL DVQRIMV NI+++
Sbjct: 121 KTIKSYIDSRARRNLGNINSELHDVQRIMVANIEEV 156

SNARE involved in targeting and fusion of ER-derived transport vesicles with the Golgi complex as well as Golgi-derived retrograde transport vesicles with the ER.

Danio rerio (taxid: 7955)

>sp|O75396|SC22B_HUMAN Vesicle-trafficking protein SEC22b OS=Homo sapiens GN=SEC22B PE=1 SV=4

 Score =  184 bits (466), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 87/156 (55%), Positives = 115/156 (73%)

Query: 1   MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
           M LLTMIARV DGL L+ASMQ+DE S R   +YQ+QAKQLFRKLN  SP + ++E G   
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 60

Query: 61  FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
           FHY+I++GVC L LCE  F   +A++YLE L  EF  Q+G +    +RPY+F+EFD+ I+
Sbjct: 61  FHYIIEQGVCDLVLCEAAFPKTLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQ 120

Query: 121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           K +K + D+  RRNL ++NTELQDVQRIMV NI+++
Sbjct: 121 KTKKLYIDSCARRNLGSINTELQDVQRIMVANIEEV 156

SNARE involved in targeting and fusion of ER-derived transport vesicles with the Golgi complex as well as Golgi-derived retrograde transport vesicles with the ER.

Homo sapiens (taxid: 9606)

>sp|Q9Y7L0|SEC22_SCHPO Protein transport protein sec22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec22 PE=3 SV=2

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/153 (44%), Positives = 108/153 (70%), Gaps = 3/153 (1%)

Query: 5   TMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYL 64
           T + R+ DGL L+AS+ DDE +ER+   ++ QAK + ++L+  S  + SIE+G+Y FHYL
Sbjct: 5   TTVTRL-DGLPLAASV-DDESTERNLESHKKQAKLILKRLSPTSEKRASIESGDYTFHYL 62

Query: 65  IDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQ-FEQCTRPYAFVEFDSSIKKLR 123
           ID G+C+L +CE+++  K+A+SYLE L+ EF   +G +  +   RPYAFV+FD+ ++K +
Sbjct: 63  IDNGICYLCICEQSYPRKLAFSYLEELAGEFWNSFGEEALQPGLRPYAFVQFDTFMQKSK 122

Query: 124 KSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           + +   R   NL+ LNTEL+DV R+M +NI+D+
Sbjct: 123 RVYNTPRANDNLDKLNTELKDVTRVMTKNIEDL 155

Nonessential SNARE involved in targeting and fusion of ER-derived transport vesicles with the Golgi complex as well as Golgi-derived retrograde transport vesicles with the ER.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
307201141	213	Vesicle-trafficking protein SEC22b [Harp	0.718	0.732	0.621	9e-53
383848450	213	PREDICTED: vesicle-trafficking protein S	0.718	0.732	0.628	1e-52
291233300	216	PREDICTED: SEC22 vesicle trafficking pro	0.718	0.722	0.643	1e-52
91080669	213	PREDICTED: similar to snare protein sec2	0.718	0.732	0.628	2e-52
332018749	213	Vesicle-trafficking protein SEC22b-B [Ac	0.718	0.732	0.615	4e-52
307180027	213	Vesicle-trafficking protein SEC22b [Camp	0.718	0.732	0.608	7e-52
170065851	211	transport protein SEC22 [Culex quinquefa	0.709	0.729	0.641	7e-52
157133826	211	snare protein sec22 [Aedes aegypti] gi|9	0.709	0.729	0.641	8e-52
350416028	213	PREDICTED: vesicle-trafficking protein S	0.718	0.732	0.608	1e-51
72110057	216	PREDICTED: vesicle-trafficking protein S	0.718	0.722	0.620	2e-51

>gi|307201141|gb|EFN81052.1| Vesicle-trafficking protein SEC22b [Harpegnathos saltator]

 Score =  212 bits (539), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 97/156 (62%), Positives = 123/156 (78%)

Query: 1   MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
           M LLTMIAR+ DGL L+A++Q++E S RS LEYQNQAK LFRKL   SP + ++ETG Y 
Sbjct: 1   MVLLTMIARISDGLPLAATIQENEQSGRSILEYQNQAKMLFRKLAPQSPTRCTLETGPYL 60

Query: 61  FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
           FHYLI+ G+C+L LCE+ +ST++AYSYLE ++ EF+ QYG      TRPY F+EFD+ I+
Sbjct: 61  FHYLIENGICYLILCERNYSTRIAYSYLEDIAQEFYAQYGKHVNIVTRPYTFIEFDTYIQ 120

Query: 121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           K +K F+D R RRNLNTLN +LQDVQRIMVQNIDD+
Sbjct: 121 KAKKVFSDGRSRRNLNTLNNQLQDVQRIMVQNIDDV 156

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848450|ref|XP_003699863.1| PREDICTED: vesicle-trafficking protein SEC22b-B-like [Megachile rotundata]

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/156 (62%), Positives = 122/156 (78%)

Query: 1   MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
           M LLTMIAR+ DGL L+A+MQ+DE S RS LEYQNQAK LFRKL   SPA+ +IETG Y 
Sbjct: 1   MVLLTMIARIADGLPLAATMQEDEQSGRSILEYQNQAKMLFRKLGPQSPARCTIETGPYL 60

Query: 61  FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
           FHYLI+  +C+L LCE+ +S +VAYSYLE ++ EFH  YG +    TRPY+F+EF++ I+
Sbjct: 61  FHYLIENEICYLVLCERNYSKRVAYSYLEDIAQEFHSLYGKRVNTVTRPYSFIEFNTYIQ 120

Query: 121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           K +K F D R RRN+N LNT+LQDVQRIMVQNIDD+
Sbjct: 121 KAKKVFLDGRSRRNMNALNTQLQDVQRIMVQNIDDV 156

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291233300|ref|XP_002736579.1| PREDICTED: SEC22 vesicle trafficking protein-like 1-like [Saccoglossus kowalevskii]

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 101/157 (64%), Positives = 125/157 (79%), Gaps = 1/157 (0%)

Query: 1   MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
           M LLTMIARV+DGL L+ASMQ+DE S RS  +YQNQAK LFRKL+ NSP + SIETG   
Sbjct: 1   MVLLTMIARVQDGLPLAASMQEDEQSGRSLTDYQNQAKMLFRKLDENSPLRCSIETGQMM 60

Query: 61  -FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSI 119
            FHYLIDR VC+L LCEKTFS K+A++YL+ L  EF+GQYG +    +RPY+F+EFD+ +
Sbjct: 61  IFHYLIDRSVCYLVLCEKTFSKKLAFAYLDDLQNEFYGQYGRRVGMVSRPYSFIEFDTYM 120

Query: 120 KKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           +K +K + D+R RRN+N LN ELQDVQRIMVQNIDD+
Sbjct: 121 QKTKKQYMDSRTRRNINVLNNELQDVQRIMVQNIDDV 157

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|91080669|ref|XP_975087.1| PREDICTED: similar to snare protein sec22 [Tribolium castaneum] gi|270005842|gb|EFA02290.1| hypothetical protein TcasGA2_TC007954 [Tribolium castaneum]

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/156 (62%), Positives = 121/156 (77%)

Query: 1   MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
           M L+TMIARV DGL L+A+MQ+DE    S L+YQNQAK LFRKL   SP + +IETG Y 
Sbjct: 1   MVLMTMIARVADGLPLAATMQEDEQFGHSILDYQNQAKMLFRKLGPQSPPRCTIETGPYL 60

Query: 61  FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
           FHYLI+  VC+L LCEK +S ++AYSYLE ++ EFH QYG +    TRPY F+EFD+ I+
Sbjct: 61  FHYLIEYEVCYLVLCEKNYSKRLAYSYLEDIAQEFHAQYGKKVNTVTRPYTFIEFDTYIQ 120

Query: 121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           K +K FTD+R RRNLNT+N +LQDVQRIMVQNIDD+
Sbjct: 121 KAKKVFTDSRSRRNLNTINNQLQDVQRIMVQNIDDV 156

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018749|gb|EGI59314.1| Vesicle-trafficking protein SEC22b-B [Acromyrmex echinatior]

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 96/156 (61%), Positives = 122/156 (78%)

Query: 1   MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
           M L T+IARV DGL L+A+MQD+E   ++ +EYQNQAK LFRKL   SP K ++ETG Y 
Sbjct: 1   MVLFTIIARVADGLPLAATMQDNEQDGKNIVEYQNQAKMLFRKLGPQSPTKCTLETGPYL 60

Query: 61  FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
           FHYLI+  VC+L LCE+ +ST++AYSYLE ++ EFH QYG +    TRPY F+EFD+ I+
Sbjct: 61  FHYLIENEVCYLVLCERNYSTRIAYSYLEDIAQEFHSQYGKRVNTVTRPYTFIEFDTYIQ 120

Query: 121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           K +K F D+R RRNLNTLN++LQDVQRIMVQNIDD+
Sbjct: 121 KAKKIFMDSRSRRNLNTLNSQLQDVQRIMVQNIDDV 156

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180027|gb|EFN68103.1| Vesicle-trafficking protein SEC22b [Camponotus floridanus]

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 95/156 (60%), Positives = 124/156 (79%)

Query: 1   MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
           M L T+IARV DGL L+A+MQD+E   ++ +EYQNQAK LFRKL   SPA+ ++ETG Y 
Sbjct: 1   MVLFTIIARVSDGLPLAATMQDNEQDGKNIVEYQNQAKMLFRKLGPQSPARCTLETGPYL 60

Query: 61  FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
           FHYLI+  VC+L LCE+ +ST++AY+YLE ++ EFH QYG +    TRPY F+EFD+ I+
Sbjct: 61  FHYLIENEVCYLVLCERNYSTRIAYNYLEDIAQEFHVQYGKRVNTVTRPYTFIEFDTYIQ 120

Query: 121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           K +K F+D+R RRNLNTLN++LQDVQRIMVQNIDD+
Sbjct: 121 KAKKIFSDSRSRRNLNTLNSQLQDVQRIMVQNIDDV 156

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170065851|ref|XP_001868047.1| transport protein SEC22 [Culex quinquefasciatus] gi|167862589|gb|EDS25972.1| transport protein SEC22 [Culex quinquefasciatus]

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 100/156 (64%), Positives = 121/156 (77%), Gaps = 2/156 (1%)

Query: 1   MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
           M L+TMIARV DGL L  +MQ+DE S RS LEYQNQAK LFRKL  NSP++ SIETG Y 
Sbjct: 1   MALMTMIARVVDGLPLVGTMQEDEQSGRSVLEYQNQAKMLFRKLGPNSPSRCSIETGPYL 60

Query: 61  FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
           FHYLI+  VC+L LC+K FS ++A+SYLE ++ EFH  YG +    TRPYAF+EFD  I+
Sbjct: 61  FHYLIENDVCYLVLCDKMFSKRIAFSYLEDIAQEFHNNYGRKVNSVTRPYAFIEFDIYIQ 120

Query: 121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           K +KS TD   RRN+NT+NT+LQDVQRIMVQNIDD+
Sbjct: 121 KAKKSLTDR--RRNINTINTQLQDVQRIMVQNIDDV 154

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157133826|ref|XP_001656296.1| snare protein sec22 [Aedes aegypti] gi|94468992|gb|ABF18345.1| vesicle trafficking protein SEC22 [Aedes aegypti] gi|108870699|gb|EAT34924.1| AAEL012875-PA [Aedes aegypti]

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 100/156 (64%), Positives = 121/156 (77%), Gaps = 2/156 (1%)

Query: 1   MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
           M L+TMIARV DGL L  +MQ+DE S RS LEYQNQAK LFRKL  NSPA+ SIETG Y 
Sbjct: 1   MALMTMIARVVDGLPLVGTMQEDEQSGRSVLEYQNQAKMLFRKLGPNSPARCSIETGPYL 60

Query: 61  FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
           FHYLI+  VC+L LC+K FS ++A++YLE ++ EFH  YG +    TRPYAF+EFD  I+
Sbjct: 61  FHYLIENEVCYLVLCDKMFSKRIAFNYLEDIAQEFHNNYGRKVNSVTRPYAFIEFDIYIQ 120

Query: 121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           K +KS TD   RRN+NT+NT+LQDVQRIMVQNIDD+
Sbjct: 121 KAKKSLTDR--RRNINTINTQLQDVQRIMVQNIDDV 154

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416028|ref|XP_003490821.1| PREDICTED: vesicle-trafficking protein SEC22b-B-like [Bombus impatiens]

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/156 (60%), Positives = 119/156 (76%)

Query: 1   MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
           M LLTMIAR+ DGL L+A+MQ+DE SER  LEYQNQAK LFR+L   SPA+ +IETG Y 
Sbjct: 1   MVLLTMIARIADGLPLAATMQEDEQSERRILEYQNQAKMLFRRLEPQSPARCTIETGPYL 60

Query: 61  FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
           FHYLI+  VC+L LCEK +S +  Y+YLE ++ EFH  YG      TRPY+F+EF++ I+
Sbjct: 61  FHYLIENEVCYLVLCEKNYSKRAVYNYLEDIAQEFHSSYGKHVNTVTRPYSFIEFNTYIQ 120

Query: 121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           K +K F D R RRN+N LN++LQDVQRIMVQNIDD+
Sbjct: 121 KAKKVFLDGRSRRNMNALNSQLQDVQRIMVQNIDDV 156

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|72110057|ref|XP_795453.1| PREDICTED: vesicle-trafficking protein SEC22b-like [Strongylocentrotus purpuratus]

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/158 (62%), Positives = 123/158 (77%), Gaps = 2/158 (1%)

Query: 1   MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLN--SPAKLSIETGN 58
           M L+TMIARV DGL L+ASMQ+DE + RS  EYQ QAK LFR L LN  SP + +IE+G 
Sbjct: 1   MVLMTMIARVADGLPLAASMQEDEQAGRSLQEYQTQAKMLFRNLKLNESSPTRFTIESGP 60

Query: 59  YFFHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSS 118
            FFHYLI  G+C+L LCEK+FS K+A++YLE L  EF+ QYG +    +RPY+F+EFD+ 
Sbjct: 61  MFFHYLIQTGICYLTLCEKSFSKKLAFNYLEELHQEFYSQYGKRVPTISRPYSFIEFDTF 120

Query: 119 IKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           I+K +KS+TDTR RRNL  +NTELQDVQ+IMVQNIDD+
Sbjct: 121 IQKTKKSYTDTRARRNLANINTELQDVQKIMVQNIDDV 158

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
FB|FBgn0260855	211	Sec22 [Drosophila melanogaster	0.709	0.729	0.608	1.8e-46
UNIPROTKB|Q5ZJW4	215	SEC22B "Vesicle-trafficking pr	0.718	0.725	0.570	1.5e-44
UNIPROTKB|F1MLE8	251	SEC22B "Uncharacterized protei	0.718	0.621	0.570	2.4e-44
UNIPROTKB|E2R8Y3	247	SEC22B "Uncharacterized protei	0.718	0.631	0.570	2.4e-44
UNIPROTKB|F1SB09	215	LOC100739197 "Uncharacterized	0.718	0.725	0.570	2.4e-44
UNIPROTKB|I3LB79	218	LOC100739197 "Uncharacterized	0.718	0.715	0.570	2.4e-44
MGI|MGI:1338759	215	Sec22b "SEC22 vesicle traffick	0.718	0.725	0.570	2.4e-44
RGD|1309988	215	Sec22b "SEC22 vesicle traffick	0.718	0.725	0.570	2.4e-44
ZFIN|ZDB-GENE-030131-5488	219	sec22bb "SEC22 vesicle traffic	0.718	0.712	0.568	3.9e-44
ZFIN|ZDB-GENE-010724-3	215	sec22ba "SEC22 vesicle traffic	0.718	0.725	0.557	2.5e-42

FB|FBgn0260855 Sec22 [Drosophila melanogaster (taxid:7227)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 95/156 (60%), Positives = 118/156 (75%)

Query:     1 MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
             M LLTMIARV DGL L  +MQDDE S RS L+YQNQAK LFRKL  +SPA+ SIETG Y 
Sbjct:     1 MALLTMIARVIDGLPLVGTMQDDEQSGRSILDYQNQAKMLFRKLGTHSPARCSIETGPYL 60

Query:    61 FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
             FHYLI+  VC+L + +K +S ++A++YLE L+ EFH  YG +    TRPYAF+EFD  I+
Sbjct:    61 FHYLIENDVCYLVMVDKMYSKRLAFNYLEDLAQEFHANYGRRVNSVTRPYAFIEFDVYIQ 120

Query:   121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
             K +K  TD R  RN++ +NT+LQDVQRIMVQNIDD+
Sbjct:   121 KAKKQLTDRR--RNISNINTQLQDVQRIMVQNIDDV 154

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0005484 "SNAP receptor activity" evidence=ISS

GO:0030133 "transport vesicle" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

UNIPROTKB|Q5ZJW4 SEC22B "Vesicle-trafficking protein SEC22b" [Gallus gallus (taxid:9031)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 89/156 (57%), Positives = 118/156 (75%)

Query:     1 MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
             M LLTMIARV DGL L+ASMQ+DE S R   +YQ+QAKQLFRKLN  SP + ++E G   
Sbjct:     1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMA 60

Query:    61 FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
             FHY+I++GVC+L LCE  F  K+A++YLE L  EF  Q+G +    +RPY+F+EFD+ I+
Sbjct:    61 FHYIIEKGVCYLVLCEAAFPKKLAFAYLEDLQSEFDEQHGKKVPTVSRPYSFIEFDTYIQ 120

Query:   121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
             K +K + D+R RRNL ++NTELQDVQRIMV NI+++
Sbjct:   121 KTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEV 156

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|F1MLE8 SEC22B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 89/156 (57%), Positives = 118/156 (75%)

Query:     1 MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
             M LLTMIARV DGL L+ASMQ+DE S R   +YQ+QAKQLFRKLN  SP + ++E G   
Sbjct:     1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 60

Query:    61 FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
             FHY+I++GVC+L LCE  F  K+A++YLE L  EF  Q+G +    +RPY+F+EFD+ I+
Sbjct:    61 FHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTYIQ 120

Query:   121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
             K +K + D+R RRNL ++NTELQDVQRIMV NI+++
Sbjct:   121 KTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEV 156

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2R8Y3 SEC22B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 89/156 (57%), Positives = 118/156 (75%)

Query:     1 MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
             M LLTMIARV DGL L+ASMQ+DE S R   +YQ+QAKQLFRKLN  SP + ++E G   
Sbjct:     1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 60

Query:    61 FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
             FHY+I++GVC+L LCE  F  K+A++YLE L  EF  Q+G +    +RPY+F+EFD+ I+
Sbjct:    61 FHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTYIQ 120

Query:   121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
             K +K + D+R RRNL ++NTELQDVQRIMV NI+++
Sbjct:   121 KTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEV 156

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1SB09 LOC100739197 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 89/156 (57%), Positives = 118/156 (75%)

Query:     1 MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
             M LLTMIARV DGL L+ASMQ+DE S R   +YQ+QAKQLFRKLN  SP + ++E G   
Sbjct:     1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 60

Query:    61 FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
             FHY+I++GVC+L LCE  F  K+A++YLE L  EF  Q+G +    +RPY+F+EFD+ I+
Sbjct:    61 FHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTYIQ 120

Query:   121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
             K +K + D+R RRNL ++NTELQDVQRIMV NI+++
Sbjct:   121 KTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEV 156

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|I3LB79 LOC100739197 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 89/156 (57%), Positives = 118/156 (75%)

Query:     1 MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
             M LLTMIARV DGL L+ASMQ+DE S R   +YQ+QAKQLFRKLN  SP + ++E G   
Sbjct:     4 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 63

Query:    61 FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
             FHY+I++GVC+L LCE  F  K+A++YLE L  EF  Q+G +    +RPY+F+EFD+ I+
Sbjct:    64 FHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTYIQ 123

Query:   121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
             K +K + D+R RRNL ++NTELQDVQRIMV NI+++
Sbjct:   124 KTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEV 159

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1338759 Sec22b "SEC22 vesicle trafficking protein homolog B (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 89/156 (57%), Positives = 118/156 (75%)

Query:     1 MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
             M LLTMIARV DGL L+ASMQ+DE S R   +YQ+QAKQLFRKLN  SP + ++E G   
Sbjct:     1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 60

Query:    61 FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
             FHY+I++GVC+L LCE  F  K+A++YLE L  EF  Q+G +    +RPY+F+EFD+ I+
Sbjct:    61 FHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQ 120

Query:   121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
             K +K + D+R RRNL ++NTELQDVQRIMV NI+++
Sbjct:   121 KTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEV 156

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IDA

RGD|1309988 Sec22b "SEC22 vesicle trafficking protein homolog B (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 89/156 (57%), Positives = 118/156 (75%)

Query:     1 MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
             M LLTMIARV DGL L+ASMQ+DE S R   +YQ+QAKQLFRKLN  SP + ++E G   
Sbjct:     1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 60

Query:    61 FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
             FHY+I++GVC+L LCE  F  K+A++YLE L  EF  Q+G +    +RPY+F+EFD+ I+
Sbjct:    61 FHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQ 120

Query:   121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
             K +K + D+R RRNL ++NTELQDVQRIMV NI+++
Sbjct:   121 KTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEV 156

GO:0000139 "Golgi membrane" evidence=IEA;ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;ISO

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA;ISO

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

ZFIN|ZDB-GENE-030131-5488 sec22bb "SEC22 vesicle trafficking protein homolog B (S. cerevisiae), b" [Danio rerio (taxid:7955)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 91/160 (56%), Positives = 122/160 (76%)

Query:     1 MFLLTMIARVRDGLILSASMQDDEY-SE---RSTLEYQNQAKQLFRKLNLNSPAKLSIET 56
             M LLTMIAR+ DGL L+ASMQ+DE  SE   R   +YQ+QAKQLFRKLN  SP + ++E 
Sbjct:     1 MVLLTMIARLADGLPLAASMQEDEQGSEKMGRDLQQYQSQAKQLFRKLNEQSPNRCTLEA 60

Query:    57 GNYFFHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFD 116
             G+  FHY+I++GVC+L LCE  F  K+A++YLE L  EFH Q+G +    +RPY+F+EFD
Sbjct:    61 GSMSFHYVIEKGVCYLVLCEAGFPKKLAFAYLEDLQAEFHEQHGKKVPTVSRPYSFIEFD 120

Query:   117 SSIKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
             + I+K +KS+ D+R RRNL+ +NTELQDVQRIMV NI+++
Sbjct:   121 TYIQKTKKSYIDSRARRNLSNINTELQDVQRIMVANIEEV 160

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

ZFIN|ZDB-GENE-010724-3 sec22ba "SEC22 vesicle trafficking protein homolog B (S. cerevisiae), a" [Danio rerio (taxid:7955)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 87/156 (55%), Positives = 114/156 (73%)

Query:     1 MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
             M L TMI RV D L L+ASMQ+DE S R   +YQ+QAKQL RKLN  SPA+ ++E G   
Sbjct:     1 MVLQTMIVRVADSLPLAASMQEDEQSGRDLQKYQSQAKQLCRKLNEQSPARCTLEAGKMC 60

Query:    61 FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
             FHY+I++GVC+LALCE  F  K+A++YLE L  EF  QYG +    +RPY+F+EFD+ I+
Sbjct:    61 FHYVIEKGVCYLALCEAGFPKKLAFAYLEDLEGEFSEQYGAKVPSVSRPYSFIEFDTYIQ 120

Query:   121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
             K  KS+ D+R RRNL  +N+EL DVQRIMV NI+++
Sbjct:   121 KTIKSYIDSRARRNLGNINSELHDVQRIMVANIEEV 156

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O08595	SC22B_CRIGR	No assigned EC number	0.5641	0.7188	0.7255	yes	N/A
Q74ZD2	SEC22_ASHGO	No assigned EC number	0.3375	0.7050	0.7149	yes	N/A
P22214	SEC22_YEAST	No assigned EC number	0.3398	0.6866	0.6962	yes	N/A
Q5RAI9	SC22B_PONAB	No assigned EC number	0.5705	0.7188	0.7255	yes	N/A
Q4KM74	SC22B_RAT	No assigned EC number	0.5705	0.7188	0.7255	yes	N/A
O08547	SC22B_MOUSE	No assigned EC number	0.5705	0.7188	0.7255	yes	N/A
Q7SXP0	S22BB_DANRE	No assigned EC number	0.5705	0.7188	0.7255	yes	N/A
Q9Y7L0	SEC22_SCHPO	No assigned EC number	0.4444	0.6912	0.6976	yes	N/A
Q94AU2	SEC22_ARATH	No assigned EC number	0.4046	0.7511	0.7477	yes	N/A
O75396	SC22B_HUMAN	No assigned EC number	0.5576	0.7188	0.7255	yes	N/A
Q5ZJW4	SC22B_CHICK	No assigned EC number	0.5705	0.7188	0.7255	yes	N/A
Q6CJA0	SEC22_KLULA	No assigned EC number	0.3503	0.7050	0.7149	yes	N/A
Q6P7L4	SC22B_XENTR	No assigned EC number	0.5897	0.7188	0.7255	yes	N/A
Q6FWT0	SEC22_CANGA	No assigned EC number	0.3356	0.6635	0.6697	yes	N/A
Q6C880	SEC22_YARLI	No assigned EC number	0.4267	0.7050	0.7183	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	217
pfam13774	82	pfam13774, Longin, Regulated-SNARE-like domain	2e-26
COG5143	190	COG5143, SNC1, Synaptobrevin/VAMP-like protein [In	3e-20

>gnl|CDD|222370 pfam13774, Longin, Regulated-SNARE-like domain

 Score = 96.8 bits (242), Expect = 2e-26
 Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 1/82 (1%)

Query: 36  QAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEF 95
            AK +  KL  NSP + S E GNY FHYL++ G+C+L + +K +  ++A+++LE +  EF
Sbjct: 1   VAKTILEKLPPNSP-RQSYEEGNYTFHYLVEDGLCYLCIADKEYPRRLAFAFLEEIKDEF 59

Query: 96  HGQYGGQFEQCTRPYAFVEFDS 117
             +YGG       PYAF EFD+
Sbjct: 60  LKKYGGSQAATASPYAFPEFDT 81

Longin is one of the approximately 26 components required for transporting proteins from the ER to the plasma membrane, via the Golgi apparatus. It is necessary for the steps of the transfer from the ER to the Golgi complex. Longins are the only R-SNAREs that are common to all eukaryotes, and they are characterized by a conserved N-terminal domain with a profilin-like fold called a longin domain. Length = 82

>gnl|CDD|227472 COG5143, SNC1, Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]

 Score = 84.0 bits (208), Expect = 3e-20
 Identities = 43/159 (27%), Positives = 85/159 (53%), Gaps = 8/159 (5%)

Query: 22  DDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLI-DRGVCFLALCEKTFS 80
           D E     +  ++++ K++ R L+  S ++ SIE+G+YFFHYL    G+ ++ + +K + 
Sbjct: 19  DAESLSSFSFFHRSKVKEVLRFLSKTSASRASIESGDYFFHYLKMSSGIVYVPISDKEYP 78

Query: 81  TKVAYSYLESLSLEFHGQYG-GQFEQCTRPYAFVEFDSSIKKLRKSFTDTRVRRNLNTLN 139
            K+AY YL S++ EF       Q    T     V  D  I+   K + D  ++  L+ L 
Sbjct: 79  NKLAYGYLNSIATEFLKSSALEQLIDDTVGIMRVNIDKVIE---KGYRDPSIQDKLDQLQ 135

Query: 140 TELQDVQRIMVQNIDDI---NATMNLVLGLGNQIDLTGI 175
            EL++ +R++ +NI+ +   +  ++L++ L + + L+  
Sbjct: 136 QELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSK 174

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
KOG0859|consensus	217		100.0
KOG0862|consensus	216		100.0
KOG0861|consensus	198		99.97
COG5143	190	SNC1 Synaptobrevin/VAMP-like protein [Intracellula	99.91
KOG0860|consensus	116		99.83
PF13774	83	Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3	99.78
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	99.73
COG5143	190	SNC1 Synaptobrevin/VAMP-like protein [Intracellula	96.67
PF09426	141	Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro	96.09
PF04086	279	SRP-alpha_N: Signal recognition particle, alpha su	92.95
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	91.09
PF04099	142	Sybindin: Sybindin-like family ; InterPro: IPR0072	88.46

>KOG0859|consensus

Probab=100.00  E-value=8.6e-53  Score=336.30  Aligned_cols=192  Identities=20%  Similarity=0.372  Sum_probs=180.6

Q ss_pred             hhhhhHHHhhcCceeeeeeccccccccchhhhhhHHHHHHHHhCCCCCCceeeeccceeeeeeeecceEEEEeeccccch
Q psy15388          2 FLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGVCFLALCEKTFST   81 (217)
Q Consensus         2 I~~~~IaR~~D~l~L~~~~~~~~~~~~~~~~f~~~a~~il~~i~~~~~~k~s~~~~~~~~h~l~~~~i~~~~it~~~~p~   81 (217)
                      |+|+.||||  .++|++++.  .     .+||..++.++|+++|+..+.|+||++|+|+|||+++||++|+|+++.++++
T Consensus         3 iiYs~VARG--TvvLaeft~--~-----~gNf~sva~qiL~klp~~~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR   73 (217)
T KOG0859|consen    3 IIYSFVARG--TVILAEFTE--F-----SGNFSSIAAQILQKLPSSSNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGR   73 (217)
T ss_pred             eeEEEEecc--eEEEEeeee--c-----cCCHHHHHHHHHHhCCCCCCCceEEecCCeEEEEEEeCCeEEEEEEeccccc
Confidence            899999998  588999984  2     3699999999999999866779999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhccCccceeccceeE-EeechHHHHHHHHhhhhhhhcccccchhhhhHHHHHHhhchhhHHHhh
Q psy15388         82 KVAYSYLESLSLEFHGQYGGQFEQCTRPYAF-VEFDSSIKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDINATM  160 (217)
Q Consensus        82 ~~af~fL~ei~~~F~~~~~~~~~~~~~~~~~-~~F~~~l~~l~~~yn~~~~~dkl~~i~~~l~evk~iM~~NIdkiL~Rg  160 (217)
                      ++||.||++|+++|.+.|+....++. +|++ .+|++.|++.|++|.+.|+.|++.+++.|++|||+||.+|||++|+||
T Consensus        74 ~ipfaFLe~Ik~~F~k~YG~~a~ta~-AysmN~EFs~vL~qqm~y~s~~p~id~lskvkaqv~evk~vM~eNIekvldRG  152 (217)
T KOG0859|consen   74 QIPFAFLERIKEDFKKRYGGGAHTAV-AYSMNKEFSSVLKQQMQYCSEHPEISKLAKVKAQVTEVKGVMMENIEKVLDRG  152 (217)
T ss_pred             cccHHHHHHHHHHHHHHhccchhHHH-HhHhHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999998766664 7777 799999999999999999999999999999999999999999999999


Q ss_pred             hHhhhcCccc-cccCCCcceeecCCCCCccCCCCCcceeeeecC
Q psy15388        161 NLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLSGIPDQVRLFIGL  203 (217)
Q Consensus       161 ekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~~~~~~~~~~~~~  203 (217)
                      |+||.|+||| +|+++|..|++++++++|+|||+|.++.+++++
T Consensus       153 ekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~  196 (217)
T KOG0859|consen  153 EKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLG  196 (217)
T ss_pred             CeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhh
Confidence            9999999999 999999999999999999999999999988764

>KOG0862|consensus

Probab=100.00  E-value=3e-43  Score=286.50  Aligned_cols=193  Identities=47%  Similarity=0.753  Sum_probs=182.1

Q ss_pred             ChhhhhHHHhhcCceeeeeeccccccccchhhhhhHHHHHHHHhCCCCCCceeeeccceeeeeeeecceEEEEeeccccc
Q psy15388          1 MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGVCFLALCEKTFS   80 (217)
Q Consensus         1 mI~~~~IaR~~D~l~L~~~~~~~~~~~~~~~~f~~~a~~il~~i~~~~~~k~s~~~~~~~~h~l~~~~i~~~~it~~~~p   80 (217)
                      ||++++|+|+.||||||+++++++.+..++.++++.++.+++++.+.+++++|++.|.|.|||++++|+||+|+||..||
T Consensus         1 mi~~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s~~r~Sietg~f~fHfli~~~Vcylvicd~~yP   80 (216)
T KOG0862|consen    1 MILLTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQSPTRCSIETGPFVFHFLIESGVCYLVICDKSYP   80 (216)
T ss_pred             CceeEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCCCcccccccCCeEEEEEecCCEEEEEEecCCCc
Confidence            89999999999999999999755556677799999999999999987799999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhhccCccce-eccceeEEeechHHHHHHHHhhhhhhhcccccchhhhhHHHHHHhhchhhHHHh
Q psy15388         81 TKVAYSYLESLSLEFHGQYGGQFEQ-CTRPYAFVEFDSSIKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDINAT  159 (217)
Q Consensus        81 ~~~af~fL~ei~~~F~~~~~~~~~~-~~~~~~~~~F~~~l~~l~~~yn~~~~~dkl~~i~~~l~evk~iM~~NIdkiL~R  159 (217)
                      +++||+||+++.++|.+.|+....+ +.+||+|.+|++.|++..++||+++.++++.++.+++.+|+.||.+||+++|+|
T Consensus        81 ~kLAF~YLedL~~EF~~~~~~~~~~~~~RPY~FieFD~~IQk~Kk~ynd~r~~~n~~~~n~el~~v~~im~~niedvl~r  160 (216)
T KOG0862|consen   81 RKLAFSYLEDLAQEFDKSYGKNIIQPASRPYAFIEFDTFIQKTKKRYNDTRSQRNLLKLNQELQDVQRIMVENLEDVLQR  160 (216)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCCccCCCeeEEehhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence            9999999999999999999877665 889999999999999999999999889999999999999999999999999999


Q ss_pred             hhHhhhcCccc-cccCCCcceeecCCCCCccCCCC
Q psy15388        160 MNLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLSGI  193 (217)
Q Consensus       160 gekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~~~  193 (217)
                      ||.|+.|..++ .|+..|...++.|+.++++-.|+
T Consensus       161 g~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~  195 (216)
T KOG0862|consen  161 GEVLNALSSMASELSSESRKYPKTAKGINRKSLIR  195 (216)
T ss_pred             chHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHH
Confidence            99999999999 99999999999999998765443

>KOG0861|consensus

Probab=99.97  E-value=8.1e-31  Score=206.26  Aligned_cols=149  Identities=15%  Similarity=0.257  Sum_probs=132.1

Q ss_pred             hHHHHHHHHhCCCCCCceeeeccceeee-eeeecceEEEEeeccccchhHHHHHHHHHHHHHhhhccC-ccceeccceeE
Q psy15388         35 NQAKQLFRKLNLNSPAKLSIETGNYFFH-YLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGG-QFEQCTRPYAF  112 (217)
Q Consensus        35 ~~a~~il~~i~~~~~~k~s~~~~~~~~h-~l~~~~i~~~~it~~~~p~~~af~fL~ei~~~F~~~~~~-~~~~~~~~~~~  112 (217)
                      .+++.+.+|.+|  .+++++++++|.+| |...||+++|+++|.+||.|+||.+|.++.++|....+. .|. .. ..+-
T Consensus        42 F~sktvaeRt~~--g~rqsvk~~~Y~~h~yvrndgL~~V~~~D~eYP~rvA~tLL~kvld~~~~k~~~~~W~-~~-~~~~  117 (198)
T KOG0861|consen   42 FISKTVAERTGP--GQRQSVKHEEYLVHVYVRNDGLCGVLIADDEYPVRVAFTLLNKVLDEFTTKVPATQWP-VG-ETAD  117 (198)
T ss_pred             HHHHHHHHhcCc--ccccccccceeEEEEEEecCCeeEEEEecCcCchhHHHHHHHHHHHHHhhcCcccccC-cC-CCcC
Confidence            478889999998  59999999999999 555679999999999999999999999999999776553 444 22 2222


Q ss_pred             EeechHHHHHHHHhhhhhhhcccccchhhhhHHHHHHhhchhhHHHhhhHhhhcCccc-cccCCCcceeecCCCCCc
Q psy15388        113 VEFDSSIKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQI-DLTGIPDQVRLLGLPDKH  188 (217)
Q Consensus       113 ~~F~~~l~~l~~~yn~~~~~dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~L~~kt-~L~~~S~~F~~~a~klkr  188 (217)
                      ..| +.|..++.+|+||.++|+|.++|++|+|+|.||++.|+.+|+||||||+|++|| +|+.+|+.|+++|+|.++
T Consensus       118 ~~~-~~L~~~l~kyqdP~ead~l~kvQ~EldETKiiLhkTiesVL~RgEKLDdLV~KSe~Ls~qSKmfYKsAKK~Ns  193 (198)
T KOG0861|consen  118 LSY-PYLDTLLSKYQDPAEADPLLKVQNELDETKIILHKTIESVLERGEKLDDLVSKSENLSLQSKMFYKSAKKTNS  193 (198)
T ss_pred             CCc-hhHHHHHHHhcChhhhChHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhhHHHHHHHHHHhhcCC
Confidence            444 679999999999999999999999999999999999999999999999999999 999999999999999876

>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]

Probab=99.91  E-value=3.5e-26  Score=183.97  Aligned_cols=183  Identities=25%  Similarity=0.329  Sum_probs=148.6

Q ss_pred             hhHHHhhcCceeeeeeccccccccc-hhhhhhHHHHHHHHhCCCCCCceeeeccceeeeeeee-cceEEEEeeccccchh
Q psy15388          5 TMIARVRDGLILSASMQDDEYSERS-TLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLID-RGVCFLALCEKTFSTK   82 (217)
Q Consensus         5 ~~IaR~~D~l~L~~~~~~~~~~~~~-~~~f~~~a~~il~~i~~~~~~k~s~~~~~~~~h~l~~-~~i~~~~it~~~~p~~   82 (217)
                      +.+-|. ++.|++..++.  ++..+ .---+..+..+|.++.|....+.+++.++|.|||... +|++|+|+|+++||.+
T Consensus         4 ~~~~~~-~~~~~~~~~~~--~s~~~~~ff~~~~v~~~l~~~~~~~a~~~~ies~~~~~~~~~~s~gi~y~~~~~~e~p~~   80 (190)
T COG5143           4 ISLFRV-KGEPLRTLSDA--ESLSSFSFFHRSKVKEVLRFLSKTSASRASIESGDYFFHYLKMSSGIVYVPISDKEYPNK   80 (190)
T ss_pred             EEEEee-cCCcceeeccc--cccCcccccccchHHHHHHHhcccccchhccccCceEEEEEecCCCceeEEecccccchh
Confidence            344454 56666665532  21111 1124567888999999866678899999999998765 5999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccCc-cceeccceeEEeechHHHHHHHHhhhhhhhcccccchhhhhHHHHHHhhchhhHHHhhh
Q psy15388         83 VAYSYLESLSLEFHGQYGGQ-FEQCTRPYAFVEFDSSIKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDINATMN  161 (217)
Q Consensus        83 ~af~fL~ei~~~F~~~~~~~-~~~~~~~~~~~~F~~~l~~l~~~yn~~~~~dkl~~i~~~l~evk~iM~~NIdkiL~Rge  161 (217)
                      +||++++++..+|....+.. +.....++.+..|++.+++   .|+++..+|++.+++.+++||+.+|.+||+++|.|||
T Consensus        81 la~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~d~~~e~---~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~e  157 (190)
T COG5143          81 LAYGYLNSIATEFLKSSALEQLIDDTVGIMRVNIDKVIEK---GYRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDE  157 (190)
T ss_pred             hhhHHHHhhccHhhhhhhHhhcccCccchhhhhHHHHHHh---hcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            99999999999998877643 3333334555677777766   3999999999999999999999999999999999999


Q ss_pred             HhhhcCccc-cccCCCcceeecCCCCCccCCCC
Q psy15388        162 LVLGLGNQI-DLTGIPDQVRLLGLPDKHTLSGI  193 (217)
Q Consensus       162 kLd~L~~kt-~L~~~S~~F~~~a~klkr~m~~~  193 (217)
                      +|+.|+++| .|..+|+.|+++|++.+..+||.
T Consensus       158 kl~~lv~~ss~L~~~s~~~~k~akk~n~~~~~~  190 (190)
T COG5143         158 KLDLLVDLSSILLLSSKMFPKSAKKSNLCCLIN  190 (190)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeC
Confidence            999999999 99999999999999999999984

>KOG0860|consensus

Probab=99.83  E-value=1.4e-23  Score=155.95  Aligned_cols=74  Identities=16%  Similarity=0.222  Sum_probs=70.8

Q ss_pred             hhhcccccchhhhhHHHHHHhhchhhHHHhhhHhhhcCccc-cccCCCcceeecCCCCCccCCCCCcceeeeecC
Q psy15388        130 RVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLSGIPDQVRLFIGL  203 (217)
Q Consensus       130 ~~~dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~~~~~~~~~~~~~  203 (217)
                      +.++++.++|+||+||++||++||+|+|||||||++|++|| .|...|.+|++.|++|||+|||++-++.+++|+
T Consensus        26 ~~~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~  100 (116)
T KOG0860|consen   26 TANDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGL  100 (116)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999 999999999999999999999999999888875

>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D

Probab=99.78  E-value=2.9e-19  Score=127.62  Aligned_cols=81  Identities=40%  Similarity=0.892  Sum_probs=70.1

Q ss_pred             HHHHHHHHhCCCCCCceeeeccceeeeeeeecceEEEEeeccccchhHHHHHHHHHHHHHhhhcc-CccceeccceeEEe
Q psy15388         36 QAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYG-GQFEQCTRPYAFVE  114 (217)
Q Consensus        36 ~a~~il~~i~~~~~~k~s~~~~~~~~h~l~~~~i~~~~it~~~~p~~~af~fL~ei~~~F~~~~~-~~~~~~~~~~~~~~  114 (217)
                      +|+.||++++++.+.|.+++.++|.|||++++|++|+|||+++||.++||.||++|+++|.++|+ ..+.++. ++++.+
T Consensus         1 ~a~~il~~i~~~~~~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~~~~~~a~-~~~~~~   79 (83)
T PF13774_consen    1 QARKILKRIPPNGNSKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGGDQIKSAS-PYSFKE   79 (83)
T ss_dssp             HHHHHHHTS-TTSESEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTTTTTTTST-TTTTHH
T ss_pred             CHHHHHHhcCCCCCCeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCcchhcccC-Ccchhh
Confidence            58899999997545899999999999999999999999999999999999999999999999998 4666665 887766


Q ss_pred             ech
Q psy15388        115 FDS  117 (217)
Q Consensus       115 F~~  117 (217)
                      |++
T Consensus        80 F~~   82 (83)
T PF13774_consen   80 FDS   82 (83)
T ss_dssp             HHH
T ss_pred             cCC
Confidence            654

...

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=99.73  E-value=4.5e-21  Score=138.85  Aligned_cols=72  Identities=17%  Similarity=0.206  Sum_probs=68.8

Q ss_pred             hcccccchhhhhHHHHHHhhchhhHHHhhhHhhhcCccc-cccCCCcceeecCCCCCccCCCCCcceeeeecC
Q psy15388        132 RRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLSGIPDQVRLFIGL  203 (217)
Q Consensus       132 ~dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~~~~~~~~~~~~~  203 (217)
                      +|++.+++++|++|+++|.+||+++++|||+|++|++|| +|+..|..|+++|++++|+|||++.++.+++++
T Consensus         2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~   74 (89)
T PF00957_consen    2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIII   74 (89)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            588999999999999999999999999999999999999 999999999999999999999999988877763

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]

Probab=96.67  E-value=2.2e-05  Score=63.90  Aligned_cols=72  Identities=14%  Similarity=0.157  Sum_probs=66.6

Q ss_pred             ccccchhhhhHHHHHHhhchhhHHHhhhHhhhcCccc-cccCCCcceeecCCCCCccCCCCCcceeeeecCCC
Q psy15388        134 NLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLSGIPDQVRLFIGLPD  205 (217)
Q Consensus       134 kl~~i~~~l~evk~iM~~NIdkiL~RgekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~~~~~~~~~~~~~~~  205 (217)
                      +...++..++.++.+|..|+++.+++|++...+.|+. .|..+++.|++-+.+...+||||+.++...+++..
T Consensus        95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss  167 (190)
T COG5143          95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSS  167 (190)
T ss_pred             hhhhHhhcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence            4567889999999999999999999999999999999 99999999999999999999999999988877643

>PF09426 Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro: IPR019005 This entry represents the N-terminal domain of vacuolar R-SNARE Nyv1, which adopts a longin fold []

Probab=96.09  E-value=0.0064  Score=46.65  Aligned_cols=58  Identities=14%  Similarity=0.148  Sum_probs=38.8

Q ss_pred             HHHHHHHHhCCC---CCCceeee-ccceeeeeee---ecceEEEEeeccccchhHHHHHHHHHHH
Q psy15388         36 QAKQLFRKLNLN---SPAKLSIE-TGNYFFHYLI---DRGVCFLALCEKTFSTKVAYSYLESLSL   93 (217)
Q Consensus        36 ~a~~il~~i~~~---~~~k~s~~-~~~~~~h~l~---~~~i~~~~it~~~~p~~~af~fL~ei~~   93 (217)
                      +-..+++++-|-   +-.|+|.. .+||.++|.+   +++-+++|+|..+.|+-++...|.|++.
T Consensus        46 i~dmVlPkVV~v~GNKVTK~S~~lIDGyDCYYTT~~~d~~~vlVCFt~~~vPKILPiRlLSeLK~  110 (141)
T PF09426_consen   46 IHDMVLPKVVPVEGNKVTKMSMHLIDGYDCYYTTEDNDDNKVLVCFTRVDVPKILPIRLLSELKG  110 (141)
T ss_dssp             HHHTTGGG----SS-SSEE--S--SSSEEEEE---SS-TTEEEEEEEETTS-SSHHHHHHHHHTT
T ss_pred             HhhccccceEEccCCeEEEEEeecccccceeeecccCCCCeEEEEEEecCCcceecHHHHHhhcc
Confidence            444567777663   35566766 5899999988   3679999999999999999999999884

Vacuolar v-SNARE is required for docking and is only involved in homotypic vacuole fusion. Nyv1 is required for Ca(2+) efflux from the vacuolar lumen, a required signal for subsequent membrane fusion events, by inhibiting vacuolar Ca(2+)-ATPase PMC1 and promoting Ca(2+) release when forming trans-SNARE assemblies during the docking step. In yeast, the N-terminal domain of Nyv1 is sufficient to direct the transport of Nyv1 to limiting membrane of the vacuole []. ; PDB: 2FZ0_A.

>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=92.95  E-value=0.18  Score=43.49  Aligned_cols=78  Identities=22%  Similarity=0.415  Sum_probs=45.0

Q ss_pred             Cceeeeccceeeeeeeec--ceEEEEeeccccchhHHHHHHHHHHHHHhhhccCccceeccce---eEEeechHHHHHHH
Q psy15388         50 AKLSIETGNYFFHYLIDR--GVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPY---AFVEFDSSIKKLRK  124 (217)
Q Consensus        50 ~k~s~~~~~~~~h~l~~~--~i~~~~it~~~~p~~~af~fL~ei~~~F~~~~~~~~~~~~~~~---~~~~F~~~l~~l~~  124 (217)
                      ...+|.+++|.++|...+  +++||||=..-..-.-+=.||+.|+..|...|...........   ....|+....+++.
T Consensus        18 ~~~~~~~d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~l~~~~~~~~~~~~~~Fd~~F~~~l~   97 (279)
T PF04086_consen   18 GNSSFTYDNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQLKQLKPNTSINEYFDFDEEFDQLLK   97 (279)
T ss_dssp             ----------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHHHHSSSTHHHHT-----HHHHHHHHH
T ss_pred             CCCceeEcCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHHhhccccccccccchhHHHHHHHHHH
Confidence            456789999999998876  6999999888888777779999999999999975433111011   11256666666555


Q ss_pred             Hhh
Q psy15388        125 SFT  127 (217)
Q Consensus       125 ~yn  127 (217)
                      ...
T Consensus        98 ~~e  100 (279)
T PF04086_consen   98 ELE  100 (279)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.09  E-value=0.65  Score=35.79  Aligned_cols=95  Identities=18%  Similarity=0.213  Sum_probs=60.5

Q ss_pred             ChhhhhHHHhhcCceeeeeeccccccccchhhhhhHHHHHHHHhCCCC-CCceeeeccceeeeeeeecceEEEEeecccc
Q psy15388          1 MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNS-PAKLSIETGNYFFHYLIDRGVCFLALCEKTF   79 (217)
Q Consensus         1 mI~~~~IaR~~D~l~L~~~~~~~~~~~~~~~~f~~~a~~il~~i~~~~-~~k~s~~~~~~~~h~l~~~~i~~~~it~~~~   79 (217)
                      ||.+.+|.=......++-+... ..    ...-+...+.+........ +.--.+.++++.+-|..-+++.++++++.+.
T Consensus         1 MI~~i~i~n~~G~~i~~k~y~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~dl~~~~v~~~~e   75 (141)
T PF01217_consen    1 MIKAILILNSQGKRILSKYYRD-VS----EEERQKLFEKFIKKKSSRNSKQSPIFEHDNYRIVYKRYSDLYFVVVGDENE   75 (141)
T ss_dssp             SEEEEEEEETTSEEEEEEESST-ST----SHHHHHHHHHHHHHHHTSSSSSTSEEEETTEEEEEEEETTEEEEEEESSTS
T ss_pred             CEEEEEEEcCCCCEEEehhcCC-cc----HHHHHHHHHHHHHHHHhcccccceeeecccceeeeEeeccEEEEEEeeccc
Confidence            6666666554333455555532 11    1222333444443333321 2233466788888888889999999999999


Q ss_pred             chhHHHHHHHHHHHHHhhhcc
Q psy15388         80 STKVAYSYLESLSLEFHGQYG  100 (217)
Q Consensus        80 p~~~af~fL~ei~~~F~~~~~  100 (217)
                      ..-....||..+.+-+..-++
T Consensus        76 Nel~~~e~l~~~v~~l~~~~~   96 (141)
T PF01217_consen   76 NELLLLEFLHRLVEVLDDYFG   96 (141)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHS
T ss_pred             chHHHHHHHHHhhhhhhhhhc
Confidence            998999999998888877554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses

Probab=88.46  E-value=1.9  Score=33.58  Aligned_cols=86  Identities=20%  Similarity=0.230  Sum_probs=44.2

Q ss_pred             HHHHHHhCCC--------CCCceeeeccceeeeeee-ecceEEEEeeccccchhHHHHHHHHHHHHHhhhc-cCccceec
Q psy15388         38 KQLFRKLNLN--------SPAKLSIETGNYFFHYLI-DRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQY-GGQFEQCT  107 (217)
Q Consensus        38 ~~il~~i~~~--------~~~k~s~~~~~~~~h~l~-~~~i~~~~it~~~~p~~~af~fL~ei~~~F~~~~-~~~~~~~~  107 (217)
                      +.+..++.|.        ..+-.+++.+.|.+|+.- -.|+-|+++||+..+. ..-.++..+.+.|..-. .++.-...
T Consensus        46 ~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~dyV~KNPfy~~~  124 (142)
T PF04099_consen   46 KAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCFETPTGLKFVLITDPNVPS-LRDELLRIYYELYVDYVVKNPFYSLE  124 (142)
T ss_dssp             HHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEEE-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHHHHHHS-TTS-TT
T ss_pred             HHHHHHhCCCCcccccccceeEEEEEeCCEEEEEEEcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence            4567778772        234678888999999654 5899999999999863 23344555554444321 12211111


Q ss_pred             cceeEEeechHHHHHHH
Q psy15388        108 RPYAFVEFDSSIKKLRK  124 (217)
Q Consensus       108 ~~~~~~~F~~~l~~l~~  124 (217)
                      -|-....|+..|.++++
T Consensus       125 ~pI~~~lF~~~l~~~~~  141 (142)
T PF04099_consen  125 MPIRCELFDTKLDQYVK  141 (142)
T ss_dssp             S----HHHHHHHHHHHH
T ss_pred             CcEehHHHHHHHHHHHh
Confidence            22222356666665543

Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	217
2nup_C	196	Crystal Structure Of The Human Sec23a24A HETERODIME		1e-49
3egd_C	157	Crystal Structure Of The Mammalian Copii-Coat Prote		1e-49
1ifq_A	138	Sec22b N-Terminal Domain Length = 138		8e-34
4b93_A	189	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		4e-07
4afi_A	173	Complex Between Vamp7 Longin Domain And Fragment Of		5e-04
2vx8_A	169	Vamp7 Longin Domain Hrb Peptide Complex Length = 16		6e-04

>pdb|2NUP|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 196

Iteration: 1
 Score =  192 bits (488), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 89/156 (57%), Positives = 118/156 (75%)
Query: 1   MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
           M LLTMIARV DGL L+ASMQ+DE S R   +YQ+QAKQLFRKLN  SP + ++E G   
Sbjct: 2   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 61
Query: 61  FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
           FHY+I++GVC+L LCE  F  K+A++YLE L  EF  Q+G +    +RPY+F+EFD+ I+
Sbjct: 62  FHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQ 121
Query: 121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           K +K + D+R RRNL ++NTELQDVQRIMV NI+++
Sbjct: 122 KTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEV 157

>pdb|3EGD|C Chain C, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 157

Iteration: 1
 Score =  192 bits (488), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 89/156 (57%), Positives = 118/156 (75%)
Query: 1   MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
           M LLTMIARV DGL L+ASMQ+DE S R   +YQ+QAKQLFRKLN  SP + ++E G   
Sbjct: 1   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 60
Query: 61  FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
           FHY+I++GVC+L LCE  F  K+A++YLE L  EF  Q+G +    +RPY+F+EFD+ I+
Sbjct: 61  FHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQ 120
Query: 121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           K +K + D+R RRNL ++NTELQDVQRIMV NI+++
Sbjct: 121 KTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEV 156

>pdb|1IFQ|A Chain A, Sec22b N-Terminal Domain Length = 138

Iteration: 1
 Score =  139 bits (351), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 66/122 (54%), Positives = 88/122 (72%)
Query: 3   LLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFH 62
           LLT IARV DGL L+AS Q+DE S R   +YQ+QAKQLFRKLN  SP + ++E G   FH
Sbjct: 14  LLTXIARVADGLPLAASXQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAXTFH 73
Query: 63  YLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIKKL 122
           Y+I++GVC+L LCE  F  K+A++YLE L  EF  Q+G +    +RPY+F+EFD+ I+K 
Sbjct: 74  YIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKT 133
Query: 123 RK 124
           +K
Sbjct: 134 KK 135

>pdb|4B93|A Chain A, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 189

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 51  KLSIETGNYFFHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPY 110
           KL+   GNY FHY+    + +L + +  F    A+S+L  +   F   YG +  Q   PY
Sbjct: 43  KLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSR-AQTALPY 101
Query: 111 AF-VEFDSSIKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNID 154
           A   EF S +    K  ++ +    +     ++ +++ IMV+NID
Sbjct: 102 AMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRNID 146

>pdb|4AFI|A Chain A, Complex Between Vamp7 Longin Domain And Fragment Of Delta- Adaptin From Ap3 Length = 173

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 51  KLSIETGNYFFHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPY 110
           KL+   GNY FHY+    + +L + +  F    A+S+L  +   F   YG +  Q   PY
Sbjct: 95  KLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSR-AQTALPY 153
Query: 111 AF-VEFDS 117
           A   EF S
Sbjct: 154 AMNSEFSS 161

>pdb|2VX8|A Chain A, Vamp7 Longin Domain Hrb Peptide Complex Length = 169

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 51  KLSIETGNYFFHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPY 110
           KL+   GNY FHY+    + +L + +  F    A+S+L  +   F   YG +  Q   PY
Sbjct: 85  KLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSR-AQTALPY 143
Query: 111 AF-VEFDS 117
           A   EF S
Sbjct: 144 AMNSEFSS 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	1e-37
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	1e-19
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	3e-19
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	3e-18
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A Length = 196

 Score =  128 bits (323), Expect = 1e-37
 Identities = 89/156 (57%), Positives = 118/156 (75%)

Query: 1   MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYF 60
           M LLTMIARV DGL L+ASMQ+DE S R   +YQ+QAKQLFRKLN  SP + ++E G   
Sbjct: 2   MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 61

Query: 61  FHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIK 120
           FHY+I++GVC+L LCE  F  K+A++YLE L  EF  Q+G +    +RPY+F+EFD+ I+
Sbjct: 62  FHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQ 121

Query: 121 KLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
           K +K + D+R RRNL ++NTELQDVQRIMV NI+++
Sbjct: 122 KTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEV 157

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus} Length = 199

 Score = 82.2 bits (202), Expect = 1e-19
 Identities = 25/164 (15%), Positives = 65/164 (39%), Gaps = 11/164 (6%)

Query: 1   MFLLTMIARVRDGL----ILSASMQDDEYS--ERSTL-EYQNQAKQLFRKLNLNSPAKLS 53
           +  L  ++    G     +L A+     +S  +RS++ E+     QL  + +     + S
Sbjct: 1   LMKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGS-RAS 59

Query: 54  IETGNYFFHY-LIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAF 112
           ++   Y  H  +    +  + + +  + ++VA++ LE +  EF  Q          P   
Sbjct: 60  VKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPAT- 118

Query: 113 VEFDSSIKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDI 156
               +++      + + R    ++ +  EL + + I+   ++ +
Sbjct: 119 -IHYTALDGHLSRYQNPREADPMSKVQAELDETKIILHNTMESL 161

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A Length = 169

 Score = 80.3 bits (197), Expect = 3e-19
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 12/130 (9%)

Query: 2   FLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFF 61
            L  ++AR    L   A    +         +    +Q+  K+  +   KL+   GNY F
Sbjct: 46  ILFAVVARGTTILAKHAWCGGN---------FLEVTEQILAKIP-SENNKLTYSHGNYLF 95

Query: 62  HYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFV-EFDSSIK 120
           HY+    + +L + +  F    A+S+L  +   F   YG + +    PYA   EF S + 
Sbjct: 96  HYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTA-LPYAMNSEFSSVLA 154

Query: 121 KLRKSFTDTR 130
              K  ++  
Sbjct: 155 AQLKHHSENH 164

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens} Length = 173

 Score = 77.9 bits (191), Expect = 3e-18
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 10/120 (8%)

Query: 10  VRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGV 69
            R   IL+      +++      +    +Q+  K+  +   KL+   GNY FHY+    +
Sbjct: 62  ARGTTILA------KHAWCGG-NFLEVTEQILAKIP-SENNKLTYSHGNYLFHYICQDRI 113

Query: 70  CFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFV-EFDSSIKKLRKSFTD 128
            +L + +  F    A+S+L  +   F   YG + +    PYA   EF S +    K  ++
Sbjct: 114 VYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTA-LPYAMNSEFSSVLAAQLKHHSE 172

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A Length = 144

 Score = 50.0 bits (119), Expect = 3e-08
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 37  AKQLFRKLNLNSPAKLSIETGNYFFH-YLIDRGVCFLALCEKTFSTKVAYSYLESLSLEF 95
           A+ +  +       + SIE GNY  H Y    G+C + + +K +  + AY+ L  +  E+
Sbjct: 48  AETVASRTGAGQ--RQSIEEGNYIGHVYARSEGICGVLITDKEYPVRPAYTLLNKILDEY 105

Query: 96  HGQYGGQ----FEQCTRPYAFVEFDSSIKK 121
              +  +      +        + D+ I K
Sbjct: 106 LVAHPKEEWADVTETNDALKMKQLDTYISK 135

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 21/183 (11%), Positives = 62/183 (33%), Gaps = 43/183 (23%)

Query: 13  GLILSASMQDDEYSE--RSTLE-YQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGV 69
            + L   ++ +      RS ++ Y      + +  + +      ++   YF+ ++     
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYN-----IPKTFDSDDLIPPYLD--QYFYSHI----- 477

Query: 70  CFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIKKLRKSFTDT 129
                          + +L+++    H +    F      + F+E     +K+R   T  
Sbjct: 478 --------------GH-HLKNIE---HPERMTLFRMVFLDFRFLE-----QKIRHDSTAW 514

Query: 130 RVRRNLNTLNTELQDVQRIMVQNIDD----INATMNLVLGLGNQIDLTGIPDQVRLLGLP 185
               ++     +L+  +  +  N       +NA ++ +  +   +  +   D +R + L 
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR-IALM 573

Query: 186 DKH 188
            + 
Sbjct: 574 AED 576

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	100.0
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	100.0
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	100.0
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	99.94
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	99.91
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	99.9
2nps_A	74	VAMP-4, vesicle-associated membrane protein 4; ves	99.86
1l4a_A	80	Synaptobrevin; snare, snare complex, membrane fusi	99.86
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	99.84
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	99.84
1sfc_A	96	VAMP 2, protein (synaptobrevin 2); membrane fusion	99.81
1n7s_A	63	Vesicle-associated membrane protein 2; neuronal sn	99.79
3b5n_A	61	Synaptobrevin homolog 1; snare complex, syntaxin,	99.78
1gl2_A	65	Endobrevin; membrane protein, membrane fusion prot	99.74
1urq_A	63	M-tomosyn isoform; transport protein, tomosyn-snar	99.56
3fie_C	38	Fragment of vesicle-associated membrane protein 2;	98.63
3zym_A	310	Phosphatidylinositol-binding clathrin assembly PR	98.35
2fz0_A	149	R-snare NYV1P, V-snare component of the vacuolar s	96.32
2fh5_A	185	Signal recognition particle receptor alpha subunit	95.94
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	92.84
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	91.96
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	88.31
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	87.92
2j3w_A	142	Sedlin, trafficking protein particle complex prote	86.49
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	83.61
3cue_C	159	Transport protein particle 18 kDa subunit; membran	83.32

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=100.00  E-value=9.4e-55  Score=357.09  Aligned_cols=193  Identities=47%  Similarity=0.744  Sum_probs=125.7

Q ss_pred             ChhhhhHHHhhcCceeeeeeccccc-cccchhhhhhHHHHHHHHhCCCCCCceeeeccceeeeeeeecceEEEEeecccc
Q psy15388          1 MFLLTMIARVRDGLILSASMQDDEY-SERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGVCFLALCEKTF   79 (217)
Q Consensus         1 mI~~~~IaR~~D~l~L~~~~~~~~~-~~~~~~~f~~~a~~il~~i~~~~~~k~s~~~~~~~~h~l~~~~i~~~~it~~~~   79 (217)
                      ||+|++|||++|++|||++++.... ++ +.++|+++++.++++++++.++|+|++.++|.|||+.++|++|+|||+++|
T Consensus         2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~-~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~y   80 (196)
T 2nut_C            2 MVLLTMIARVADGLPLAASMQEDEQSGR-DLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAF   80 (196)
T ss_dssp             CCCCEEEEETTTCCEEEEECCCC------CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTS
T ss_pred             ceEEEEEEEcCCCcEEEEeecccccccc-cHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCc
Confidence            9999999999999999999853212 22 467899999999999997668999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHhhhccCccceeccceeEEeechHHHHHHHHhhhhhhhcccccchhhhhHHHHHHhhchhhHHHh
Q psy15388         80 STKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDINAT  159 (217)
Q Consensus        80 p~~~af~fL~ei~~~F~~~~~~~~~~~~~~~~~~~F~~~l~~l~~~yn~~~~~dkl~~i~~~l~evk~iM~~NIdkiL~R  159 (217)
                      |+++||.||++|+++|...|+..+.+..+|+++.+|++.|+++|++|++++.+|+|.+++.+|+||++||.+||+++|+|
T Consensus        81 p~r~af~fL~~i~~~F~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~~~~d~l~~~~~~l~ev~~im~~ni~~vl~R  160 (196)
T 2nut_C           81 PKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQR  160 (196)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTTTTCCSTTTTGGGHHHHHHHHTTTSCCC-----------------CCEEEHHHHC--
T ss_pred             chHHHHHHHHHHHHHHHHhccchhccccCCCchHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999876655557899899999999999999999899999999999999999999999999999


Q ss_pred             hhHhhhcCccc-cccCCCcceeecCCCCCccCCCCC
Q psy15388        160 MNLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLSGIP  194 (217)
Q Consensus       160 gekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~~~~  194 (217)
                      ||+||.|++|| +|+.+|..|+++|++++|+|||+.
T Consensus       161 ge~l~~L~~ks~~L~~~s~~f~~~a~~l~~~~~~~k  196 (196)
T 2nut_C          161 GEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAK  196 (196)
T ss_dssp             ------------------------------------
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999 999999999999999999999974

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=100.00  E-value=6.4e-53  Score=344.37  Aligned_cols=184  Identities=21%  Similarity=0.350  Sum_probs=141.1

Q ss_pred             hhhhhHHHhhcCceeeeeeccccccccchhhhhhHHHHHHHHhCCCCCCceeeeccceeeeeeeecceEEEEeeccccch
Q psy15388          2 FLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGVCFLALCEKTFST   81 (217)
Q Consensus         2 I~~~~IaR~~D~l~L~~~~~~~~~~~~~~~~f~~~a~~il~~i~~~~~~k~s~~~~~~~~h~l~~~~i~~~~it~~~~p~   81 (217)
                      |+|++|||+  ++|||+|+..       .++|..+++.+|+++|+ .++|+|+++|+|.|||+.++|++|+||||.+||+
T Consensus         4 ilYa~VArg--~~iLae~t~~-------~gnf~~ia~~iL~kip~-~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~   73 (189)
T 4b93_A            4 ILFAVVARG--TTILAKHAWC-------GGNFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFER   73 (189)
T ss_dssp             EEEEEEEET--TEEEEEEESS-------EECHHHHHHHHHTTCCS-SSEEEEEEETTEEEEEEEETTEEEEEEEETTSCH
T ss_pred             eEEEEEEeC--CEEEEeCCCC-------CCCHHHHHHHHHHhCCC-CCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCH
Confidence            799999996  7899999842       25899999999999997 6899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhccCccceeccceeE-EeechHHHHHHHHhhhhhhhcccccchhhhhHHHHHHhhchhhHHHhh
Q psy15388         82 KVAYSYLESLSLEFHGQYGGQFEQCTRPYAF-VEFDSSIKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDINATM  160 (217)
Q Consensus        82 ~~af~fL~ei~~~F~~~~~~~~~~~~~~~~~-~~F~~~l~~l~~~yn~~~~~dkl~~i~~~l~evk~iM~~NIdkiL~Rg  160 (217)
                      ++||.||++|+++|.+.|+..+.++. |+.+ .+|++.|+++|++|++++.+|++.+++++|+||++||.+||+++|+||
T Consensus        74 r~af~fL~~i~~eF~~~~~~~~~~~~-~~~~~~~f~~~l~~~~~~y~d~~~~d~l~~~~~~l~ev~~im~~Ni~~vl~Rg  152 (189)
T 4b93_A           74 SRAFSFLNEVKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRNIDLVAQRG  152 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGGGTCC-TTTTHHHHHHHHHHHHHHHHCC-------CCHHHHHTTTTCCEECCCCBCTTS
T ss_pred             HHHHHHHHHHHHHHHhhccccccccC-CccccchhhHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999987666654 5555 789999999999999999999999999999999999999999999999


Q ss_pred             hHhhhcCccc-cccCCCcceeecCCCCCccCCCCCcc
Q psy15388        161 NLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLSGIPDQ  196 (217)
Q Consensus       161 ekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~~~~~~  196 (217)
                      |+||.|++|| +|+.+|..|+++|++|+|+|||++.+
T Consensus       153 e~l~~L~~ks~~L~~~s~~f~~~a~~l~r~mwwkn~K  189 (189)
T 4b93_A          153 ERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIK  189 (189)
T ss_dssp             SBCCCCEETTCC-------------------------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999 99999999999999999999999864

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=100.00  E-value=6.6e-39  Score=263.10  Aligned_cols=172  Identities=12%  Similarity=0.213  Sum_probs=144.9

Q ss_pred             Cceeeeeeccccc---cccchhhhhhHH-HHHHHHhCCCCCCceeeeccceeee-eeeecceEEEEeeccccchhHHHHH
Q psy15388         13 GLILSASMQDDEY---SERSTLEYQNQA-KQLFRKLNLNSPAKLSIETGNYFFH-YLIDRGVCFLALCEKTFSTKVAYSY   87 (217)
Q Consensus        13 ~l~L~~~~~~~~~---~~~~~~~f~~~a-~~il~~i~~~~~~k~s~~~~~~~~h-~l~~~~i~~~~it~~~~p~~~af~f   87 (217)
                      .++|++..+-...   .-.+.++|...+ +.|+++++|  ++|+|+++++|.|| |+.++|++|+||||.+||+++||.|
T Consensus        17 ~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~--~~r~s~~~~~y~fH~y~~~~gl~yl~itd~~yp~r~AF~f   94 (199)
T 3kyq_A           17 AVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK--GSRASVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTL   94 (199)
T ss_dssp             EEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT--TEEEEEECSSEEEEEEECTTSEEEEEEEETTSCHHHHHHH
T ss_pred             ceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC--CCeEEEEeCCEEEEEEEecCCEEEEEEECCCCCHHHHHHH
Confidence            3567777743111   123356666655 589999886  68999999999999 9999999999999999999999999


Q ss_pred             HHHHHHHHhhhccCccc--eeccceeEEeechHHHHHHHHhhhhhhhcccccchhhhhHHHHHHhhchhhHHHhhhHhhh
Q psy15388         88 LESLSLEFHGQYGGQFE--QCTRPYAFVEFDSSIKKLRKSFTDTRVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLG  165 (217)
Q Consensus        88 L~ei~~~F~~~~~~~~~--~~~~~~~~~~F~~~l~~l~~~yn~~~~~dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~  165 (217)
                      |++|+++|.+.|+...+  ...+++.   | +.++++|.+|++++.+|++.+++++|+||++||.+||+++|+|||+||.
T Consensus        95 L~ei~~eF~~~~~~~~~~~~~~~~~~---f-~~l~~~m~~Y~dp~~~d~l~~~q~el~evk~iM~~NI~~vl~RgekLd~  170 (199)
T 3kyq_A           95 LEKVLDEFSKQVDRIDWPVGSPATIH---Y-TALDGHLSRYQNPREADPMSKVQAELDETKIILHNTMESLLERGEKLDD  170 (199)
T ss_dssp             HHHHHHHHHHHSCGGGSTTCCTTTCC---C-CTHHHHHHHTTSGGGCCCCHHHHHHHHTCCCEEESSGGGTSCTTCCHHH
T ss_pred             HHHHHHHHHHhccchhhhcccccccc---c-HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHccchHHH
Confidence            99999999999974322  2234553   6 6799999999999889999999999999999999999999999999999


Q ss_pred             cCccc-cccCCCcceeecCCCCCccCCC
Q psy15388        166 LGNQI-DLTGIPDQVRLLGLPDKHTLSG  192 (217)
Q Consensus       166 L~~kt-~L~~~S~~F~~~a~klkr~m~~  192 (217)
                      |++|| +|+.+|..|+++|+++++  ||
T Consensus       171 L~~ks~~L~~~s~~F~k~a~~lns--Cc  196 (199)
T 3kyq_A          171 LVSKSEVLGTQSKAFYKTARKQNS--CC  196 (199)
T ss_dssp             HHHHCSSSCHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh--hh
Confidence            99999 999999999999999987  65

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}

Probab=99.94  E-value=8.5e-28  Score=192.83  Aligned_cols=116  Identities=26%  Similarity=0.501  Sum_probs=106.3

Q ss_pred             hhhhhHHHhhcCceeeeeeccccccccchhhhhhHHHHHHHHhCCCCCCceeeeccceeeeeeeecceEEEEeeccccch
Q psy15388          2 FLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGVCFLALCEKTFST   81 (217)
Q Consensus         2 I~~~~IaR~~D~l~L~~~~~~~~~~~~~~~~f~~~a~~il~~i~~~~~~k~s~~~~~~~~h~l~~~~i~~~~it~~~~p~   81 (217)
                      |+|++|||+  .+|||+++..       .++|..+++.+|+++++ .++|++++.++|.|||++++|++|+||||.+||+
T Consensus        56 I~Ya~VArg--~tiLAE~t~~-------~gnf~~va~~iL~kip~-~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~r  125 (173)
T 4afi_A           56 ILFAVVARG--TTILAKHAWC-------GGNFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFER  125 (173)
T ss_dssp             EEEEEEEET--TEEEEEEESS-------CCCHHHHHHHHHTTSCS-SSEEEEEEETTEEEEEEEETTEEEEEEEETTSCH
T ss_pred             EEEEEEECC--CEEEEEccCC-------CCCHHHHHHHHHHhCCC-CCCeEEEEECCEEEEEEEECCEEEEEEECCccCh
Confidence            899999997  5999999842       25899999999999997 5789999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhccCccceeccceeEE-eechHHHHHHHHhhh
Q psy15388         82 KVAYSYLESLSLEFHGQYGGQFEQCTRPYAFV-EFDSSIKKLRKSFTD  128 (217)
Q Consensus        82 ~~af~fL~ei~~~F~~~~~~~~~~~~~~~~~~-~F~~~l~~l~~~yn~  128 (217)
                      ++||+||++|+++|.+.|+..+.++ +||++. +|++.|+++|++||+
T Consensus       126 r~aF~FLedI~~eF~~~yg~~~~ta-~pya~~~eF~~~L~~~M~~yn~  172 (173)
T 4afi_A          126 SRAFSFLNEVKKRFQTTYGSRAQTA-LPYAMNSEFSSVLAAQLKHHSE  172 (173)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGGGTC-CTTTTHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhchhhhhc-cCcchhHHHHHHHHHHHHHhcC
Confidence            9999999999999999998766554 799995 999999999999986

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A

Probab=99.91  E-value=7.2e-25  Score=171.19  Aligned_cols=128  Identities=18%  Similarity=0.286  Sum_probs=101.9

Q ss_pred             Chhhhh-HHHhhc--Cceeeeeeccccc---cccchhhh-hhHHHHHHHHhCCCCCCceeeeccceeeeee-eecceEEE
Q psy15388          1 MFLLTM-IARVRD--GLILSASMQDDEY---SERSTLEY-QNQAKQLFRKLNLNSPAKLSIETGNYFFHYL-IDRGVCFL   72 (217)
Q Consensus         1 mI~~~~-IaR~~D--~l~L~~~~~~~~~---~~~~~~~f-~~~a~~il~~i~~~~~~k~s~~~~~~~~h~l-~~~~i~~~   72 (217)
                      |.+|++ |+|+.|  +++|+++++-...   +-.+.++| ..+++.|++|+++  ++|+|++.++|.|||+ .++|++|+
T Consensus         5 Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~--~~R~sv~~~~y~fH~~~~~~gl~~l   82 (144)
T 3bw6_A            5 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA--GQRQSIEEGNYIGHVYARSEGICGV   82 (144)
T ss_dssp             CCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCT--TEEEEEEETTEEEEEEECTTSEEEE
T ss_pred             EEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCC--CceEEEEeCCEEEEEEEecCCEEEE
Confidence            556666 999877  8999999853111   11122666 8899999999997  5899999999999999 78999999


Q ss_pred             EeeccccchhHHHHHHHHHHHHHhhhccCc-cceecc---ceeEEeechHHHHHHHHhhhhhhhcc
Q psy15388         73 ALCEKTFSTKVAYSYLESLSLEFHGQYGGQ-FEQCTR---PYAFVEFDSSIKKLRKSFTDTRVRRN  134 (217)
Q Consensus        73 ~it~~~~p~~~af~fL~ei~~~F~~~~~~~-~~~~~~---~~~~~~F~~~l~~l~~~yn~~~~~dk  134 (217)
                      ||||.+||+|+||.||++|+++|.++|+.. +.++.+   ++.   | +.|++.|++|++|+++|+
T Consensus        83 ~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~~~~---f-~~l~~~i~kYqdp~~aD~  144 (144)
T 3bw6_A           83 LITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALK---M-KQLDTYISKYQDPSQADA  144 (144)
T ss_dssp             EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCGGGC---C-THHHHHHHHTSCC-----
T ss_pred             EEECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccCCcc---h-HHHHHHHHHhCchhhcCC
Confidence            999999999999999999999999999866 655555   554   4 789999999999887775

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A

Probab=99.90  E-value=5.6e-25  Score=175.87  Aligned_cols=117  Identities=26%  Similarity=0.498  Sum_probs=100.6

Q ss_pred             hhhhhHHHhhcCceeeeeeccccccccchhhhhhHHHHHHHHhCCCCCCceeeeccceeeeeeeecceEEEEeeccccch
Q psy15388          2 FLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGVCFLALCEKTFST   81 (217)
Q Consensus         2 I~~~~IaR~~D~l~L~~~~~~~~~~~~~~~~f~~~a~~il~~i~~~~~~k~s~~~~~~~~h~l~~~~i~~~~it~~~~p~   81 (217)
                      |+|++|+|+  ++||++++..       .++|+.+++.+++++++ .++|++++.++|.|||+.++|++|+||||++||+
T Consensus        46 ilYa~VaRG--~~VLae~t~~-------~gnf~~iak~ll~kl~~-~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~  115 (169)
T 2vx8_A           46 ILFAVVARG--TTILAKHAWC-------GGNFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFER  115 (169)
T ss_dssp             CCEEEEEET--TEEEEEEESS-------CBSHHHHHHHHHTTSCS-SCEEEEEEETTEEEEEEEETTEEEEEEEETTSCH
T ss_pred             eEEEEEEcC--CEEEEEeccC-------CCCHHHHHHHHHhhCCC-CCCceEEEECCEEEEEEEECCEEEEEEEccccch
Confidence            899999996  7999999842       25899999999999998 5789999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhccCccceeccceeEE-eechHHHHHHHHhhhh
Q psy15388         82 KVAYSYLESLSLEFHGQYGGQFEQCTRPYAFV-EFDSSIKKLRKSFTDT  129 (217)
Q Consensus        82 ~~af~fL~ei~~~F~~~~~~~~~~~~~~~~~~-~F~~~l~~l~~~yn~~  129 (217)
                      ++||.||++|+++|.+.|+..+..+ +++++. +|++.|++.|++|+++
T Consensus       116 r~AF~fLedI~~eF~~~y~~~~~~a-~pysf~~eF~~~Lk~~~~~~~~~  163 (169)
T 2vx8_A          116 SRAFSFLNEVKKRFQTTYGSRAQTA-LPYAMNSEFSSVLAAQLKHHSEN  163 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTGGGTC-CTTTTHHHHHHHHSCC-------
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcc-CCcchhHHHHHHHHHHHHHhcCc
Confidence            9999999999999999998766555 689996 9999999999999764

>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}

Probab=99.86  E-value=2.8e-24  Score=149.50  Aligned_cols=70  Identities=9%  Similarity=0.049  Sum_probs=61.6

Q ss_pred             hhhhhcccccchhhhhHHHHHHhhchhhHHHhhhHhhhcCccc-cccCCCcceeecCCCCCccCCCCCcce
Q psy15388        128 DTRVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLSGIPDQV  197 (217)
Q Consensus       128 ~~~~~dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~~~~~~~  197 (217)
                      +|+..|+|.+++.+|+||++||.+||+++|+|||+||.|++|| +|+.+|..|+++|++++|+|||++.++
T Consensus         3 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww~n~K~   73 (74)
T 2nps_A            3 MGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKI   73 (74)
T ss_dssp             ---CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5678899999999999999999999999999999999999999 999999999999999999999999876

>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=99.86  E-value=1.2e-23  Score=148.35  Aligned_cols=69  Identities=14%  Similarity=0.119  Sum_probs=61.5

Q ss_pred             hhhhcccccchhhhhHHHHHHhhchhhHHHhhhHhhhcCccc-cccCCCcceeecCCCCCccCCCCCcce
Q psy15388        129 TRVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLSGIPDQV  197 (217)
Q Consensus       129 ~~~~dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~~~~~~~  197 (217)
                      ++..|+|.+++.+|+||++||.+||+++|+|||+||.|++|| +|+.+|..|+++|++++|+|||++.++
T Consensus        11 ~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~wwkn~K~   80 (80)
T 1l4a_A           11 VQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWWKNCKM   80 (80)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC------
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            467899999999999999999999999999999999999999 999999999999999999999998864

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=99.84  E-value=1.1e-24  Score=157.21  Aligned_cols=73  Identities=16%  Similarity=0.157  Sum_probs=70.0

Q ss_pred             hhcccccchhhhhHHHHHHhhchhhHHHhhhHhhhcCccc-cccCCCcceeecCCCCCccCCCCCcceeeeecC
Q psy15388        131 VRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLSGIPDQVRLFIGL  203 (217)
Q Consensus       131 ~~dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~~~~~~~~~~~~~  203 (217)
                      ++|++.+++++|+||++||.+||+++|+|||+||.|++|| +|+.+|..|+++|++++|+|||++.++.+++|+
T Consensus         3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~   76 (91)
T 3hd7_A            3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGV   76 (91)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999 999999999999999999999999999888764

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=99.84  E-value=6.1e-24  Score=160.28  Aligned_cols=74  Identities=16%  Similarity=0.168  Sum_probs=70.8

Q ss_pred             hhhcccccchhhhhHHHHHHhhchhhHHHhhhHhhhcCccc-cccCCCcceeecCCCCCccCCCCCcceeeeecC
Q psy15388        130 RVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLSGIPDQVRLFIGL  203 (217)
Q Consensus       130 ~~~dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~~~~~~~~~~~~~  203 (217)
                      +..|++.+++++|+||++||.+||+++|+|||+||.|++|| +|+.+|..|+++|++++|+|||++.++.+++|+
T Consensus        30 ~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~  104 (119)
T 2kog_A           30 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGV  104 (119)
T ss_dssp             SSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999 999999999999999999999999998887764

>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.81  E-value=7.5e-23  Score=148.85  Aligned_cols=68  Identities=16%  Similarity=0.117  Sum_probs=64.5

Q ss_pred             hhhcccccchhhhhHHHHHHhhchhhHHHhhhHhhhcCccc-cccCCCcceeecCCCCCccCCCCCcce
Q psy15388        130 RVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLSGIPDQV  197 (217)
Q Consensus       130 ~~~dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~~~~~~~  197 (217)
                      +..|+|.+++.+|+||++||.+||+++|+|||+||.|++|| +|+.+|..|+++|++|+|+|||++.++
T Consensus        27 ~~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwkn~K~   95 (96)
T 1sfc_A           27 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKM   95 (96)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            46899999999999999999999999999999999999999 999999999999999999999999875

>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B

Probab=99.79  E-value=6.3e-22  Score=133.45  Aligned_cols=62  Identities=18%  Similarity=0.167  Sum_probs=60.2

Q ss_pred             hhhcccccchhhhhHHHHHHhhchhhHHHhhhHhhhcCccc-cccCCCcceeecCCCCCccCC
Q psy15388        130 RVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLS  191 (217)
Q Consensus       130 ~~~dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~  191 (217)
                      |.+|++.+++.+|+||++||.+||+++|+|||+||.|++|| +|+.+|..|+++|++++|+||
T Consensus         1 ~~~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW   63 (63)
T 1n7s_A            1 GSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW   63 (63)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            35789999999999999999999999999999999999999 999999999999999999999

>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=99.78  E-value=9.7e-22  Score=131.65  Aligned_cols=60  Identities=13%  Similarity=0.161  Sum_probs=58.5

Q ss_pred             hcccccchhhhhHHHHHHhhchhhHHHhhhHhhhcCccc-cccCCCcceeecCCCCCccCC
Q psy15388        132 RRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQI-DLTGIPDQVRLLGLPDKHTLS  191 (217)
Q Consensus       132 ~dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~L~~kt-~L~~~S~~F~~~a~klkr~m~  191 (217)
                      .|++.+++.+|+||++||.+||+++|+|||+||.|++|| +|+.+|..|+++|++|+|+||
T Consensus         1 gd~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW   61 (61)
T 3b5n_A            1 GSRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW   61 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            378999999999999999999999999999999999999 999999999999999999999

>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.74  E-value=4.1e-20  Score=125.22  Aligned_cols=61  Identities=21%  Similarity=0.256  Sum_probs=51.9

Q ss_pred             hhhhhcccccchhhhhHHHHHHhhchhhHHHhhhHhhhcCccc-cccCCCcceeecCCCCCc
Q psy15388        128 DTRVRRNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQI-DLTGIPDQVRLLGLPDKH  188 (217)
Q Consensus       128 ~~~~~dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~L~~kt-~L~~~S~~F~~~a~klkr  188 (217)
                      +|+.+|+|.+++.+|+||+.||.+||+++|+|||+||.|++|| +|+.+|..|+++|++|+|
T Consensus         4 ~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r   65 (65)
T 1gl2_A            4 MSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR   65 (65)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4568899999999999999999999999999999999999999 999999999999999986

>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.56  E-value=3.6e-17  Score=109.54  Aligned_cols=58  Identities=5%  Similarity=-0.018  Sum_probs=54.7

Q ss_pred             cccccchhhhhHHHHHHhhchhhHHHhhhHhhhcCccc-cccCCCcceeecCCCCCccC
Q psy15388        133 RNLNTLNTELQDVQRIMVQNIDDINATMNLVLGLGNQI-DLTGIPDQVRLLGLPDKHTL  190 (217)
Q Consensus       133 dkl~~i~~~l~evk~iM~~NIdkiL~RgekLd~L~~kt-~L~~~S~~F~~~a~klkr~m  190 (217)
                      .++.+++.++++|++||.+||+++++|||+|+.|++|| +|..+|..|.+.|++|+++|
T Consensus         4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky   62 (63)
T 1urq_A            4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY   62 (63)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            47999999999999999999999999999999999999 99999999999999998876

>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}

Probab=98.63  E-value=5e-10  Score=67.22  Aligned_cols=32  Identities=22%  Similarity=0.309  Sum_probs=30.2

Q ss_pred             hhhcccccchhhhhHHHHHHhhchhhHHHhhh
Q psy15388        130 RVRRNLNTLNTELQDVQRIMVQNIDDINATMN  161 (217)
Q Consensus       130 ~~~dkl~~i~~~l~evk~iM~~NIdkiL~Rge  161 (217)
                      +..|++.+++.+|+||++||.+||+++|+||+
T Consensus         6 ~~~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~   37 (38)
T 3fie_C            6 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDC   37 (38)
T ss_dssp             CCCCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence            45799999999999999999999999999996

>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}

Probab=98.35  E-value=8.3e-08  Score=83.18  Aligned_cols=51  Identities=20%  Similarity=0.309  Sum_probs=33.6

Q ss_pred             EeechHHHHHHHHhhh---------------hhhhcccccchhhhhHHHHHHhhchhhHHHhhhHh
Q psy15388        113 VEFDSSIKKLRKSFTD---------------TRVRRNLNTLNTELQDVQRIMVQNIDDINATMNLV  163 (217)
Q Consensus       113 ~~F~~~l~~l~~~yn~---------------~~~~dkl~~i~~~l~evk~iM~~NIdkiL~RgekL  163 (217)
                      ..|.....++.+.|..               .+..|++.++|+||+||++||.+|||++|+|||+|
T Consensus       245 krf~~Q~e~L~~Fy~~ck~l~l~~~~iP~L~~~p~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l  310 (310)
T 3zym_A          245 KKFLTRMTRISEFLKVAEQVGIDRGDISGSGSGHMDRVRNLQSEVEGVKNIMTQNVERILARGENL  310 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTC------------------CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence            4556666666666654               23468999999999999999999999999999986

>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}

Probab=96.32  E-value=0.0027  Score=47.75  Aligned_cols=59  Identities=12%  Similarity=0.130  Sum_probs=47.2

Q ss_pred             hHHHHHHHHhCCC---CCCceeee-ccceeeeeeee---cceEEEEeeccccchhHHHHHHHHHHH
Q psy15388         35 NQAKQLFRKLNLN---SPAKLSIE-TGNYFFHYLID---RGVCFLALCEKTFSTKVAYSYLESLSL   93 (217)
Q Consensus        35 ~~a~~il~~i~~~---~~~k~s~~-~~~~~~h~l~~---~~i~~~~it~~~~p~~~af~fL~ei~~   93 (217)
                      .+...+++++-|-   +-.|+|.. .+||.++|.+.   ++.+++|.|..+.|+-++...|.++++
T Consensus        49 Li~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~  114 (149)
T 2fz0_A           49 LIMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE  114 (149)
T ss_dssp             HHHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred             HHHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence            3455677887764   34466666 58999999883   578999999999999999999999986

>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1

Probab=95.94  E-value=0.0083  Score=47.86  Aligned_cols=90  Identities=14%  Similarity=0.177  Sum_probs=56.5

Q ss_pred             hhHHHhhcCceeeeeeccccccccchhhhhhHHHHHHHHhCCCCCCceeeeccceeeeeeeec--ceEEEEeeccccchh
Q psy15388          5 TMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDR--GVCFLALCEKTFSTK   82 (217)
Q Consensus         5 ~~IaR~~D~l~L~~~~~~~~~~~~~~~~f~~~a~~il~~i~~~~~~k~s~~~~~~~~h~l~~~--~i~~~~it~~~~p~~   82 (217)
                      +++-|+  |+||-+++.. ....  ......+++.++=.=+   .+..++.+++|.+.|..++  +++||+|=..-.+-.
T Consensus        15 ~IfTkG--GvVLWs~~~~-~~~~--~~~IN~LIr~VlLEER---~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~   86 (185)
T 2fh5_A           15 TIFSKG--GLVLWCFQGV-SDSC--TGPVNALIRSVLLQER---GGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLT   86 (185)
T ss_dssp             EEEETT--SBEEEEEBTT-TBSC--CCHHHHHHHHTGGGC----------CCCCCEEEEEEETTTTEEEEEEESCGGGHH
T ss_pred             EEEeCC--eEEEEeecCC-cccc--cchHHHHHHHhhhccc---cCCCceeEcCeEEEEEEeccCCEEEEEEEcccccch
Confidence            444554  9999876421 1110  1234444444443222   2334688999999998875  699999977777777


Q ss_pred             HHHHHHHHHHHHHhhhccCc
Q psy15388         83 VAYSYLESLSLEFHGQYGGQ  102 (217)
Q Consensus        83 ~af~fL~ei~~~F~~~~~~~  102 (217)
                      -.=.||+.|+..|...|...
T Consensus        87 YiD~LL~~v~~~Fv~~Y~~~  106 (185)
T 2fh5_A           87 YVDKLIDDVHRLFRDKYRTE  106 (185)
T ss_dssp             HHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            77799999999999999644

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=92.84  E-value=0.47  Score=35.64  Aligned_cols=95  Identities=13%  Similarity=0.124  Sum_probs=59.0

Q ss_pred             ChhhhhHHHhhcCceeeeeeccccccccchhhhhhHHHHHHHHhCCCCC-CceeeeccceeeeeeeecceEEEEeecccc
Q psy15388          1 MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSP-AKLSIETGNYFFHYLIDRGVCFLALCEKTF   79 (217)
Q Consensus         1 mI~~~~IaR~~D~l~L~~~~~~~~~~~~~~~~f~~~a~~il~~i~~~~~-~k~s~~~~~~~~h~l~~~~i~~~~it~~~~   79 (217)
                      ||.+.+|.= +.|-++.+-.-. ..   +...-+.+.+.+.+.+....+ .--.++.+++.+-|...+++.|+|+++.+.
T Consensus         1 MI~~i~i~~-~~Gk~~l~k~y~-~~---~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~   75 (142)
T 2vgl_S            1 MIRFILIQN-RAGKTRLAKWYM-QF---DDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVND   75 (142)
T ss_dssp             CEEEEEEEE-TTSCEEEEEECS-CC---CHHHHHHHHHHHHHHHHTCCTTSCSEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred             CeEEEEEEc-CCCCEEEEEeCC-CC---ChhhhHHHHHHHHHHHhcCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCC
Confidence            666666653 345555443311 01   111233344444444433211 222455678888888889999999999999


Q ss_pred             chhHHHHHHHHHHHHHhhhcc
Q psy15388         80 STKVAYSYLESLSLEFHGQYG  100 (217)
Q Consensus        80 p~~~af~fL~ei~~~F~~~~~  100 (217)
                      +.-..+.||..+.+-+..-++
T Consensus        76 N~l~~le~L~~~ve~l~~yf~   96 (142)
T 2vgl_S           76 NNLAYLEAIHNFVEVLNEYFH   96 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHc
Confidence            999999999988887776554

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=91.96  E-value=0.63  Score=35.68  Aligned_cols=94  Identities=13%  Similarity=0.117  Sum_probs=58.7

Q ss_pred             ChhhhhHHHhhcCceeee-eeccccccccchhhhhhHHHHHHHHhCCCCCC-ceeeeccceeeeeeeecceEEEEeeccc
Q psy15388          1 MFLLTMIARVRDGLILSA-SMQDDEYSERSTLEYQNQAKQLFRKLNLNSPA-KLSIETGNYFFHYLIDRGVCFLALCEKT   78 (217)
Q Consensus         1 mI~~~~IaR~~D~l~L~~-~~~~~~~~~~~~~~f~~~a~~il~~i~~~~~~-k~s~~~~~~~~h~l~~~~i~~~~it~~~   78 (217)
                      ||.+.+|.= +.|-++.+ +...  .+   ...-..+.+.+.+.+....+. --.++.+++.|.|...+++.|+|+++.+
T Consensus         1 MI~~i~Il~-~~Gk~~lsk~y~~--~~---~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~   74 (158)
T 1w63_Q            1 MMRFMLLFS-RQGKLRLQKWYLA--TS---DKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQ   74 (158)
T ss_dssp             CEEEEEEEC-SSSCEEEEEESSC--CC---HHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSS
T ss_pred             CeEEEEEEC-CCCCEEEEEeCCC--CC---HHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCC
Confidence            666666653 34555544 3321  11   111123344444444432112 2245567888888888999999999999


Q ss_pred             cchhHHHHHHHHHHHHHhhhcc
Q psy15388         79 FSTKVAYSYLESLSLEFHGQYG  100 (217)
Q Consensus        79 ~p~~~af~fL~ei~~~F~~~~~  100 (217)
                      .+.-..+.||..+.+-+..-++
T Consensus        75 ~Nel~~le~L~~~vevl~~yf~   96 (158)
T 1w63_Q           75 DNELITLELIHRYVELLDKYFG   96 (158)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999988877766554

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=88.31  E-value=0.93  Score=34.32  Aligned_cols=87  Identities=14%  Similarity=0.137  Sum_probs=56.3

Q ss_pred             HHHHHHhCCC--CCCceeeeccceeee-eeeecceEEEEeeccccchhHHHHHHHHHH-HHHhhhcc-CccceeccceeE
Q psy15388         38 KQLFRKLNLN--SPAKLSIETGNYFFH-YLIDRGVCFLALCEKTFSTKVAYSYLESLS-LEFHGQYG-GQFEQCTRPYAF  112 (217)
Q Consensus        38 ~~il~~i~~~--~~~k~s~~~~~~~~h-~l~~~~i~~~~it~~~~p~~~af~fL~ei~-~~F~~~~~-~~~~~~~~~~~~  112 (217)
                      ..+.+++.|.  ...-.+++.++|.+| |.+-.|+=|+++||+..+.  .-.||.+|. +.|..-.- ++.-....|-..
T Consensus        46 ~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiKFvl~td~~~~~--i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s  123 (145)
T 2j3t_C           46 RSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGP--IRDVLHHIYSALYVEFVVKNPLCPLGQTVQS  123 (145)
T ss_dssp             HHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCEEEEEECTTCCC--CHHHHHHHHHTTHHHHTTTCTTSCTTSCCCC
T ss_pred             HHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCEEEEEecCCcch--HHHHHHHHHHHHHHHHHhcCCCCCCCCceec
Confidence            4467788873  234577888899777 6667899999999987554  557888888 56654211 222111122222


Q ss_pred             EeechHHHHHHHHh
Q psy15388        113 VEFDSSIKKLRKSF  126 (217)
Q Consensus       113 ~~F~~~l~~l~~~y  126 (217)
                      ..|+..++++++++
T Consensus       124 ~~Fd~~v~~~~~~~  137 (145)
T 2j3t_C          124 ELFRSRLDSYVRSL  137 (145)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhC
Confidence            46888888887655

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A

Probab=87.92  E-value=1.8  Score=33.01  Aligned_cols=61  Identities=11%  Similarity=0.052  Sum_probs=47.7

Q ss_pred             HHHHHHHhCCCCCCceeeeccceeeeeeeecceEEEEeeccccchhHHHHHHHHHHHHHhhhc
Q psy15388         37 AKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQY   99 (217)
Q Consensus        37 a~~il~~i~~~~~~k~s~~~~~~~~h~l~~~~i~~~~it~~~~p~~~af~fL~ei~~~F~~~~   99 (217)
                      .+.+..++.. .+ .-.+..+++.+.|....++.|+|+++.+...-..+.||..+-+.+..-+
T Consensus        45 e~~i~~~~~r-~~-~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~ile~L~~~ve~l~~yf  105 (153)
T 3tjz_C           45 EKNIFNKTHR-TD-SEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQML  105 (153)
T ss_dssp             HHHHHHHHSS-CC-CCEEEETTEEEEEEECSSCEEEEEEETTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CC-CCEEEECCEEEEEEEECCEEEEEEEcCCCChHHHHHHHHHHHHHHHHHh
Confidence            4445555543 22 2356678999999988999999999999999999999999888887766

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A

Probab=86.49  E-value=2  Score=32.25  Aligned_cols=87  Identities=14%  Similarity=0.133  Sum_probs=53.4

Q ss_pred             HHHHhCCCCCC---ceeeeccceeee-eeeecceEEEEeeccccchhHHHHHHHHHHHHHhhhccCccceeccceeEEee
Q psy15388         40 LFRKLNLNSPA---KLSIETGNYFFH-YLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEF  115 (217)
Q Consensus        40 il~~i~~~~~~---k~s~~~~~~~~h-~l~~~~i~~~~it~~~~p~~~af~fL~ei~~~F~~~~~~~~~~~~~~~~~~~F  115 (217)
                      +++++.+..++   ..+...++|.+| |.+-.|+=|+.++++. .....-.||.+|.+.|....-++.-....|-....|
T Consensus        50 iv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~NPfy~~~~pI~s~~F  128 (142)
T 2j3w_A           50 LVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAF  128 (142)
T ss_dssp             HHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCCEEEEEESSC-CHHHHHHHHHHHHHHHHHHHHSTTCCTTCCCCCHHH
T ss_pred             HHHHhcCCCCcceeEeeecccceEEEEEEcCCCcEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHH
Confidence            55555432223   355556677666 6777899999999973 234456888898887776322322111112222468


Q ss_pred             chHHHHHHHHhh
Q psy15388        116 DSSIKKLRKSFT  127 (217)
Q Consensus       116 ~~~l~~l~~~yn  127 (217)
                      +..+++++++|-
T Consensus       129 d~~v~~~~~~~l  140 (142)
T 2j3w_A          129 DRKVQFLGKKHL  140 (142)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            888888887763

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A

Probab=83.61  E-value=3.3  Score=33.61  Aligned_cols=91  Identities=18%  Similarity=0.148  Sum_probs=60.4

Q ss_pred             HHHHHHHhCCC--CCCceeeeccceeee-eeeecceEEEEeeccccchhHHHHHHHHHHHHHhhhcc-CccceeccceeE
Q psy15388         37 AKQLFRKLNLN--SPAKLSIETGNYFFH-YLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYG-GQFEQCTRPYAF  112 (217)
Q Consensus        37 a~~il~~i~~~--~~~k~s~~~~~~~~h-~l~~~~i~~~~it~~~~p~~~af~fL~ei~~~F~~~~~-~~~~~~~~~~~~  112 (217)
                      .+.+..++.|.  ...-.+++.+.|.+| |.+-.|+-|+++|++..  .-.-.||.+|.+.|....- +..-....|-..
T Consensus       118 Ld~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~~--~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~s  195 (219)
T 2j3t_D          118 LFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQ--AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRC  195 (219)
T ss_dssp             HHHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTTC--CCHHHHHHHHHHHHHHHHTTCTTCCTTSCCCC
T ss_pred             HHHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCCc--hHHHHHHHHHHHHHHHHhccCCCCCCCCccch
Confidence            45567788873  124467778899777 66678999999999863  3356888898877765312 322211122223


Q ss_pred             EeechHHHHHHHHhhhh
Q psy15388        113 VEFDSSIKKLRKSFTDT  129 (217)
Q Consensus       113 ~~F~~~l~~l~~~yn~~  129 (217)
                      ..|+..++++++.++..
T Consensus       196 ~~Fd~~v~~l~~~~~~~  212 (219)
T 2j3t_D          196 ELFDQNLKLALEVAEKA  212 (219)
T ss_dssp             HHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHhhcc
Confidence            46899999999888653

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=83.32  E-value=2.1  Score=32.84  Aligned_cols=59  Identities=24%  Similarity=0.305  Sum_probs=42.6

Q ss_pred             HHHHHHHhCCCC--CCceeeeccceeee-eeeecceEEEEeeccccchhHHHHHHHHHHH-HHhh
Q psy15388         37 AKQLFRKLNLNS--PAKLSIETGNYFFH-YLIDRGVCFLALCEKTFSTKVAYSYLESLSL-EFHG   97 (217)
Q Consensus        37 a~~il~~i~~~~--~~k~s~~~~~~~~h-~l~~~~i~~~~it~~~~p~~~af~fL~ei~~-~F~~   97 (217)
                      ++.+.+++.|..  +.-.+++.+.|.+| |.+-.|+-||++||...+.  .-.+|.+|.. .|..
T Consensus        51 L~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~~--i~~~l~~iy~~lYv~  113 (159)
T 3cue_C           51 LRSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQS--YTQVLQYIYSHIYVK  113 (159)
T ss_dssp             HHHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSSC--THHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcch--HHHHHHHHHHHHHHH
Confidence            344677888742  45667778899887 5666899999999987543  4577888886 6654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	217
d1ifqa_	127	d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId	5e-49
d1ioua_	140	d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker	1e-14

>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Sec22b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  154 bits (391), Expect = 5e-49
 Identities = 68/125 (54%), Positives = 91/125 (72%)

Query: 2   FLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFF 61
            LLTMIARV DGL L+ASMQ+DE S R   +YQ+QAKQLFRKLN  SP + ++E G   F
Sbjct: 2   VLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTF 61

Query: 62  HYLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIKK 121
           HY+I++GVC+L LCE  F  K+A++YLE L  EF  Q+G +    +RPY+F+EFD+ I+K
Sbjct: 62  HYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQK 121

Query: 122 LRKSF 126
            +K +
Sbjct: 122 TKKLY 126

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.0 bits (161), Expect = 1e-14
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 15/131 (11%)

Query: 4   LTMIARVRDG----LILSAS--MQDDEYSERSTL-EYQN-QAKQLFRKLNLNSPAKLSIE 55
           +  I   R G    L LS    +    + ERS++ ++    A+ +  +       + SIE
Sbjct: 3   IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGE--RQSIE 60

Query: 56  TGNYFFH-YLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQ----FEQCTRPY 110
            GNY  H Y    G+C + + +K +  + AY+ L  +  E+   +  +      +     
Sbjct: 61  EGNYIGHVYARSEGICGVLITDKQYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDAL 120

Query: 111 AFVEFDSSIKK 121
              + D+ I K
Sbjct: 121 KMKQLDTYISK 131

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d1ifqa_	127	Sec22b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ioua_	140	Synaptobrevin homolog 1 ykt6 {Baker's yeast (Sacch	99.8
d2fh5a1	129	Signal recognition particle receptor alpha subunit	96.19
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	95.09
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	93.32
d2j3wa1	140	Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]	84.42

>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Sec22b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-34  Score=218.15  Aligned_cols=126  Identities=54%  Similarity=0.908  Sum_probs=117.7

Q ss_pred             ChhhhhHHHhhcCceeeeeeccccccccchhhhhhHHHHHHHHhCCCCCCceeeeccceeeeeeeecceEEEEeeccccc
Q psy15388          1 MFLLTMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDRGVCFLALCEKTFS   80 (217)
Q Consensus         1 mI~~~~IaR~~D~l~L~~~~~~~~~~~~~~~~f~~~a~~il~~i~~~~~~k~s~~~~~~~~h~l~~~~i~~~~it~~~~p   80 (217)
                      .|+||+|||++||||||++++++...+.++.+++++|+.|+++++|+.++|+|++.++|.|||++++|++|+|+||++||
T Consensus         1 sil~t~IaR~~DgL~L~~s~~~~~~~~~~~~~~k~qak~ll~kl~~~~~~r~s~~~~~y~fHy~~~~gi~yl~i~d~~~~   80 (127)
T d1ifqa_           1 SVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP   80 (127)
T ss_dssp             CCCEEEEEETTTCCEEEEECCCTTCCHHHHHHHHHHHHHHHTTCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred             CeEEEEEEEecCCcEEEEEeccccccchhHHHHHHHHHHHHHhCCCCCCCcEEEEECCEEEEEEecCCeEEEEEEccccC
Confidence            38999999999999999999655555667888999999999999987889999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhhccCccceeccceeEEeechHHHHHHHHh
Q psy15388         81 TKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIKKLRKSF  126 (217)
Q Consensus        81 ~~~af~fL~ei~~~F~~~~~~~~~~~~~~~~~~~F~~~l~~l~~~y  126 (217)
                      +++||.||++|+++|.++|+..+.++.+||+|.+|+..|++.++.|
T Consensus        81 ~~laF~fLeei~~eF~~~y~~~i~~~~rpy~Fi~Fd~~iqk~k~~y  126 (127)
T d1ifqa_          81 KKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLY  126 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTTTTCCSTTTTGGGHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhhhhhhhcccCCcchHHHHHHHHHHHHhc
Confidence            9999999999999999999988888889999999999999999887

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=1.8e-20  Score=143.67  Aligned_cols=128  Identities=17%  Similarity=0.174  Sum_probs=94.5

Q ss_pred             hhhHHH--hhcCceeeeeeccccc---cccchhh-hhhHHHHHHHHhCCCCCCceeeeccceeee-eeeecceEEEEeec
Q psy15388          4 LTMIAR--VRDGLILSASMQDDEY---SERSTLE-YQNQAKQLFRKLNLNSPAKLSIETGNYFFH-YLIDRGVCFLALCE   76 (217)
Q Consensus         4 ~~~IaR--~~D~l~L~~~~~~~~~---~~~~~~~-f~~~a~~il~~i~~~~~~k~s~~~~~~~~h-~l~~~~i~~~~it~   76 (217)
                      +.+|.|  ..+.++|++..+-..-   +-.+..+ +..+++.|++|.++  ++|++++.++|.|| |+.++|++|+||||
T Consensus         5 ~~~v~~~~~~~~~~L~~a~Dlssf~ffqR~svkE~~~f~sr~i~~Rt~~--g~r~sv~~~~y~~h~yv~~~gl~~l~i~d   82 (140)
T d1ioua_           5 YIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA--GERQSIEEGNYIGHVYARSEGICGVLITD   82 (140)
T ss_dssp             EEEEEEEETTEEEEEEEEECCSSCCTTHHHHHHHHHHHHHHHHHHHCCS--SSEEEEEETTEEEEEECCSSSCEEEEEBC
T ss_pred             EEEEEEcCCCCcEEEeeeccccccceeehHhHHHHHHHHHHHHhhcCCC--CceEEEEcCCeEEEEEEeeCCEEEEEEEC
Confidence            444555  3456888888753111   1111233 34488999999997  58999999999999 78889999999999


Q ss_pred             cccchhHHHHHHHHHHHHHhhhccCccceeccceeEEeechHHHHHHHHhhhhhhhc
Q psy15388         77 KTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAFVEFDSSIKKLRKSFTDTRVRR  133 (217)
Q Consensus        77 ~~~p~~~af~fL~ei~~~F~~~~~~~~~~~~~~~~~~~F~~~l~~l~~~yn~~~~~d  133 (217)
                      .+||+|+||.||++|.++|.+.|+...+.+........+-+.|+.++++|+||.++|
T Consensus        83 ~~Yp~r~AF~~L~~i~~eF~~~~~~~~~~~i~~~~~~~~~~~l~~~l~kYQdP~~aD  139 (140)
T d1ioua_          83 KQYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKMKQLDTYISKYQDPSQAD  139 (140)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHSSCHHHHTTCSCCCTTTSCHHHHHHHHHTTSSCGGG
T ss_pred             CCcchHHHHHHHHHHHHHHHHHcChHhhhhhhccccccchHHHHHHHHHhCchhhcc
Confidence            999999999999999999999997543322111111223478999999999987776

>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: SRP alpha N-terminal domain-like
domain: Signal recognition particle receptor alpha subunit, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.002  Score=46.75  Aligned_cols=114  Identities=14%  Similarity=0.199  Sum_probs=65.7

Q ss_pred             hhHHHhhcCceeeeeeccccccccchhhhhhHHHHHHHHhCCCCCCceeeeccceeeeeeeec--ceEEEEeeccccchh
Q psy15388          5 TMIARVRDGLILSASMQDDEYSERSTLEYQNQAKQLFRKLNLNSPAKLSIETGNYFFHYLIDR--GVCFLALCEKTFSTK   82 (217)
Q Consensus         5 ~~IaR~~D~l~L~~~~~~~~~~~~~~~~f~~~a~~il~~i~~~~~~k~s~~~~~~~~h~l~~~--~i~~~~it~~~~p~~   82 (217)
                      +++.+|  |++|-+++.   .+...........+.++=.=+   .+..++.+++|..+|..++  +++|||+=.+-..-.
T Consensus         6 ~IftkG--GiVLW~~~~---~~~~~~~~IN~LI~~vlLEER---~~~~~~~~d~y~lkw~~~Ne~~lvfV~vYQ~il~l~   77 (129)
T d2fh5a1           6 TIFSKG--GLVLWCFQG---VSDSCTGPVNALIRSVLLQER---GGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLT   77 (129)
T ss_dssp             EEEETT--SBEEEEEBT---TTBSCCCHHHHHHHHTGGGC----------CCCCCEEEEEEETTTTEEEEEEESCGGGHH
T ss_pred             EEEeCC--eEEEEeecC---CCcccchhHHHHHHHhheecc---cCCCceeECCEEEEEEEeccCCEEEEEEEhhhhchH
Confidence            344454  999987652   111111234444444442222   2445688899999998876  689999977777777


Q ss_pred             HHHHHHHHHHHHHhhhccCcccee--c-cceeEEeechHHHHHHHHh
Q psy15388         83 VAYSYLESLSLEFHGQYGGQFEQC--T-RPYAFVEFDSSIKKLRKSF  126 (217)
Q Consensus        83 ~af~fL~ei~~~F~~~~~~~~~~~--~-~~~~~~~F~~~l~~l~~~y  126 (217)
                      -.=.||+.++..|...|.+.....  . ......+|++.-.+++++-
T Consensus        78 yvd~lL~~i~~~F~~~y~~~l~~~~~~~~~~~~~~Fd~~F~~~l~~~  124 (129)
T d2fh5a1          78 YVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREA  124 (129)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccccccccchHHHHHHHHHHH
Confidence            777999999999999986432211  0 0111125666666655443

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.42  E-value=1.2  Score=31.62  Aligned_cols=89  Identities=15%  Similarity=0.137  Sum_probs=55.5

Q ss_pred             HHHHHHHhCCCCCC---ceeeeccceeee-eeeecceEEEEeeccccchhHHHHHHHHHHHHHhhhccCccceeccceeE
Q psy15388         37 AKQLFRKLNLNSPA---KLSIETGNYFFH-YLIDRGVCFLALCEKTFSTKVAYSYLESLSLEFHGQYGGQFEQCTRPYAF  112 (217)
Q Consensus        37 a~~il~~i~~~~~~---k~s~~~~~~~~h-~l~~~~i~~~~it~~~~p~~~af~fL~ei~~~F~~~~~~~~~~~~~~~~~  112 (217)
                      +..+++...+..+.   +.....++|.+| |.+..|+=|+.+++..-+.. .-.|+.++.+.|....-++.-....|-..
T Consensus        45 sLDive~~~~~~~~~~l~~l~~~~~~~v~~y~T~tg~Kfvl~td~~~~~~-i~~~~~~v~~lYv~~v~NPfy~~~~pI~s  123 (140)
T d2j3wa1          45 ALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDG-IKNFFTDVYDLYIKFAMNPFYEPNSPIRS  123 (140)
T ss_dssp             HHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCCEEEEEESSCCHHH-HHHHHHHHHHHHHHHHHSTTCCTTCCCCC
T ss_pred             HHHHHHHhcccCCCccceeEEecCCEEEEEEEcCCCcEEEEEeCCCcchH-HHHHHHHHHHHHHHHhhCccCCCCCcccC
Confidence            33455555543222   234456788777 77789999999999876543 35778888877765332322211123223


Q ss_pred             EeechHHHHHHHHh
Q psy15388        113 VEFDSSIKKLRKSF  126 (217)
Q Consensus       113 ~~F~~~l~~l~~~y  126 (217)
                      ..|+..++++.++|
T Consensus       124 ~~Fd~~v~~~~~~~  137 (140)
T d2j3wa1         124 SAFDRKVQFLGKKH  137 (140)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            46888898888877