Psyllid ID: psy15389

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860----
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEETNTRARHETLPTKLTVGEGMEEGEFSEAREDLAALEKDYEEVGMDSRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKMS
ccEEEEEcccHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEccccccccccEEEEccccccccEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccEEEEEcccccccccHHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccccccEEEEEcHHHHHHHHHHccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccEEccccccccccEEEEEEcccccHHHHHHHHHHHHHccccccccccccccEEEEEcccccccccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccEEEEEcccHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEcccccccccccEEEEccccccccEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccEEEEEcccccccccHHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccccccEEEEEcHHHHHHHHHHccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccEEccccccccccEEEEEccccccHHHHHHHHHHHHHccccccccccccccEEEEEcccccccccccccccc
cEEEEEEEccccHHHcHHHHHHHHHHcccccccccccccccccccccEEEEEEcccccccccEEEEEEcccccHHEcccccccccccccHcEcccccccccHHHHcccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHcccccEEEEEEEcccccccEEEccccHEEEHHHHEccccEEEEEccHHHHHHHHHcccccccccccHHHHHHHHHHHHHEEEcccccccccHHHHHHcccccccEcccccccccccccccHHHHHccHHHHHHHHccHHHHccccccccccEEEEEEEEccccccHHHHHHHHHHHcccccEEEEEcccccEEEEEcccccccccccHHHcHHHEHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccEcccccccccEccccccHEEEccccHHccccEEEEEEEEEccccHHccHHHHHHHHHHcccccccccccccccccccccEEEEEEcccccccccEEEEEEcccccHHEEccccccccccccHcEcccccccccHccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHcccccEEEEEEEcccccccEEEccccHEEEHHHHEccccEEEEEccHHHHHHHHHcccccccccccHHHHHHHHHHHHHEEEcccccccccHHHHHHcccccccEcccccccccccccccHHHHHccHHHHHHHHccHHHHccccccccccEEEEEEEEccccccHHHHHHHHHHHcccccEEEEEcccccEEEEEcccccccccccccccc
RECISIHVGQAGVQIGNACWELyclehgiqpdgqmpsdktigggddsfntffsetgagkhvpravfvdleptvvdevrtgtyrqlfhpeqlitgkeDAARQIgeysghytigKEIVDLVLDRIRKLADQCTGLQgflifhsfgggtgsgFTSLLMERLSVdygkksklefaiypapqvstavvepynsiltthttlehsdcafmvdneaIYDICRRnldierptytnlNRLIGQIVSSITAslrfdgalnvdltefqtnlvpyprihfplvtyapvisAEKAYHEQLSVAEItnacfepanqmvkcdprhgkymaccmlyrgdvvpkDVNAAIATIktkrtiqfvdwcptgfkvginyqpptvvpggdlakVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWyvgegmeegefsEAREDLAALEKDYeevgmdsvegegeetntrarhetlptkltvgegmeegefsEAREDLAALEKDYeevgmdsrecISIHVGQAGVQIGNACWELyclehgiqpdgqmpsdktigggddsfntffsetgagkhvpravfvdleptvvdevrtgtyrqlfhpeqlitgkedaannyarghytiGKEIVDLVLDRIRKLADQCTGLQgflifhsfgggtgsgFTSLLMERLSVdygkksklefaiypapqvstavvepynsiltthttlehsdcafmvdneaIYDICRRnldierptytnlNRLIGQIVSSITAslrfdgalnvdltefqtnlvpyprihfplvtyapvisAEKAYHEQLSVAEItnacfepanqmvkcdprhgkymaccmlyrgdvvpkDVNAAIATIktkrtiqfvdwcptgfkvginyqpptvvpggdlakms
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTgtyrqlfhpeqlitgkedAARQIGEYSGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIAtiktkrtiqfvDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYeevgmdsvegegeetntrarhetlptkltvgegmeegefSEAREDLAALEKDYEEVGMDSRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGtyrqlfhpeqlitgkedaaNNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIAtiktkrtiqfvDWCPTGfkvginyqpptvvpggdlakms
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHsfgggtgsgftsLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEETNTRARHETLPTKLTVGEGMEEGEFSEAREDLAALEKDYEEVGMDSRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHsfgggtgsgftsLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKMS
**CISIHVGQAGVQIGNACWELYCLEHGI***************************AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG***************************************************************************VGMDSRECISIHVGQAGVQIGNACWELYCLEHGI**************************GAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV**********
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSVEGEGEE*******************************************MDSRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKT**GGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLA***
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGM*************ARHETLPTKLTVGEGMEEGEFSEAREDLAALEKDYEEVGMDSRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKMS
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSV******************KLTVGE**EEGEFSEAREDLAALEKDYEEVGMDSRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGD*****
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RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGExxxxxxxxxxxxxxxxxxxxxSVEGEGEETNTRARHETLPTKLTVGEGMEEGExxxxxxxxxxxxxxxxxxxxxSRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKMS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query864 2.2.26 [Sep-21-2011]
P18288450 Tubulin alpha chain, test N/A N/A 0.508 0.975 0.972 0.0
P06603450 Tubulin alpha-1 chain OS= yes N/A 0.506 0.973 0.981 0.0
Q68FR8450 Tubulin alpha-3 chain OS= yes N/A 0.508 0.975 0.975 0.0
P05214450 Tubulin alpha-3 chain OS= yes N/A 0.508 0.975 0.975 0.0
Q13748450 Tubulin alpha-3C/D chain yes N/A 0.508 0.975 0.975 0.0
P06605450 Tubulin alpha-3 chain OS= yes N/A 0.506 0.973 0.977 0.0
Q32KN8450 Tubulin alpha-3 chain OS= yes N/A 0.508 0.975 0.972 0.0
P68373449 Tubulin alpha-1C chain OS yes N/A 0.515 0.991 0.955 0.0
P68365449 Tubulin alpha-1C chain OS yes N/A 0.515 0.991 0.955 0.0
Q2HJ86452 Tubulin alpha-1D chain OS yes N/A 0.508 0.971 0.965 0.0
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1 Back     alignment and function desciption
 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/441 (97%), Positives = 432/441 (97%), Gaps = 2/441 (0%)

Query: 1   RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
           RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2   RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61

Query: 61  VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
           VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAA       GHYTIGKEIVDLVL
Sbjct: 62  VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYAR--GHYTIGKEIVDLVL 119

Query: 121 DRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVST 180
           DR+RKL+DQCTGLQGFLIFHSFGGGTGSGF SLLMERLSVDYGKKSKLEFAIYPAPQVST
Sbjct: 120 DRVRKLSDQCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVST 179

Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
           AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 239

Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
           ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHE LSVAEITNACFEPA
Sbjct: 240 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEMLSVAEITNACFEPA 299

Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
           NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP
Sbjct: 300 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 359

Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
           PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS
Sbjct: 360 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 419

Query: 421 EAREDLAALEKDYEEVGMDSV 441
           EAREDLAALEKDYEEVG+DSV
Sbjct: 420 EAREDLAALEKDYEEVGVDSV 440
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Oncorhynchus mykiss (taxid: 8022)
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain OS=Drosophila melanogaster GN=alphaTub84B PE=2 SV=1 Back     alignment and function description
>sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba3a PE=2 SV=1 Back     alignment and function description
>sp|P05214|TBA3_MOUSE Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE=1 SV=1 Back     alignment and function description
>sp|Q13748|TBA3C_HUMAN Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3 Back     alignment and function description
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain OS=Drosophila melanogaster GN=alphaTub84D PE=2 SV=1 Back     alignment and function description
>sp|Q32KN8|TBA3_BOVIN Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 SV=1 Back     alignment and function description
>sp|P68373|TBA1C_MOUSE Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c PE=1 SV=1 Back     alignment and function description
>sp|P68365|TBA1C_CRIGR Tubulin alpha-1C chain OS=Cricetulus griseus GN=TUBA1C PE=2 SV=1 Back     alignment and function description
>sp|Q2HJ86|TBA1D_BOVIN Tubulin alpha-1D chain OS=Bos taurus GN=TUBA1D PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query864
326922893814 PREDICTED: tubulin alpha-4A chain-like [ 0.763 0.810 0.864 0.0
397511428681 PREDICTED: tubulin alpha-1C chain-like [ 0.554 0.703 0.854 0.0
195157178 1216 GL12416 [Drosophila persimilis] gi|19411 0.506 0.360 0.981 0.0
332027696595 Tubulin alpha-1 chain [Acromyrmex echina 0.513 0.746 0.968 0.0
432094860791 Tubulin alpha-3 chain [Myotis davidii] 0.508 0.554 0.975 0.0
344295288758 PREDICTED: tubulin alpha-3 chain-like [L 0.508 0.579 0.975 0.0
321478016450 hypothetical protein DAPPUDRAFT_220904 [ 0.513 0.986 0.970 0.0
405963072458 Tubulin alpha-3 chain [Crassostrea gigas 0.508 0.958 0.979 0.0
449271034453 Tubulin alpha-3 chain, partial [Columba 0.515 0.982 0.966 0.0
307208702463 Tubulin alpha-1 chain [Harpegnathos salt 0.517 0.965 0.959 0.0
>gi|326922893|ref|XP_003207677.1| PREDICTED: tubulin alpha-4A chain-like [Meleagris gallopavo] Back     alignment and taxonomy information
 Score = 1164 bits (3010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/684 (86%), Positives = 617/684 (90%), Gaps = 24/684 (3%)

Query: 1   RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
           RECIS+HVGQAGVQ+GN CWELYCLEHGIQPDGQMPSDKTIGGGDDSF TFF ETGAGKH
Sbjct: 19  RECISVHVGQAGVQMGNTCWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKH 78

Query: 61  VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
           VPRA+FVDLEPTV+DE+R G YRQLFHPEQ+ITGKEDAA       GHYTIGKEI+D VL
Sbjct: 79  VPRAIFVDLEPTVIDEIRGGVYRQLFHPEQMITGKEDAANNYAR--GHYTIGKEIIDQVL 136

Query: 121 DRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVST 180
           DRIRKLADQCTGLQGFL+F SFGGGTGSGFTSLLMERLSVDYGKKSKLEF+IYPAPQVST
Sbjct: 137 DRIRKLADQCTGLQGFLVFRSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 196

Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
           AVVEPYNSILTTH+TLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI Q+VSSIT
Sbjct: 197 AVVEPYNSILTTHSTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQVVSSIT 256

Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
           ASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPV+SAE+AYHEQLSVAEITN+CFEPA
Sbjct: 257 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVVSAERAYHEQLSVAEITNSCFEPA 316

Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
           NQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKR+IQFVDWCPTGFKVGINYQP
Sbjct: 317 NQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQP 376

Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
           PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS
Sbjct: 377 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 436

Query: 421 EAREDLAALEKDYEEVGMDSVEGEGEETNTRARHET-LPTKLTVGEGMEEGEFSEAREDL 479
           EARED+AALEKDYEEVG+DS E E E        E  +P                A  DL
Sbjct: 437 EAREDMAALEKDYEEVGLDSYEDEEEGEELSCTFELHIP--------------PSAMSDL 482

Query: 480 AALEKDYEEVGMDSRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDD 539
                         RECIS+HVGQAGVQ+GN CWELYCLEHGIQPDGQMPSDKTIGGGDD
Sbjct: 483 ILPPP-------PQRECISVHVGQAGVQMGNTCWELYCLEHGIQPDGQMPSDKTIGGGDD 535

Query: 540 SFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGH 599
           SF TFF ETGAGKHVPRA+FVDLEPTV+DEVR G YRQLFHPEQLITGKEDAANNYARGH
Sbjct: 536 SFTTFFCETGAGKHVPRAIFVDLEPTVIDEVRAGIYRQLFHPEQLITGKEDAANNYARGH 595

Query: 600 YTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKL 659
           YTIGKEI+D VLDRIRKLADQCTGLQGFL+FHSFGGGTGSGFTSLLMERLSVDYGKKSKL
Sbjct: 596 YTIGKEIIDQVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKL 655

Query: 660 EFAIYPAPQVSTAVVEPYNSILTT 683
           EF+IYPAPQVSTAVVEPYNSILTT
Sbjct: 656 EFSIYPAPQVSTAVVEPYNSILTT 679

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota
>gi|397511428|ref|XP_003826076.1| PREDICTED: tubulin alpha-1C chain-like [Pan paniscus] Back     alignment and taxonomy information
>gi|195157178|ref|XP_002019473.1| GL12416 [Drosophila persimilis] gi|194116064|gb|EDW38107.1| GL12416 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|332027696|gb|EGI67764.1| Tubulin alpha-1 chain [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|432094860|gb|ELK26268.1| Tubulin alpha-3 chain [Myotis davidii] Back     alignment and taxonomy information
>gi|344295288|ref|XP_003419344.1| PREDICTED: tubulin alpha-3 chain-like [Loxodonta africana] Back     alignment and taxonomy information
>gi|321478016|gb|EFX88974.1| hypothetical protein DAPPUDRAFT_220904 [Daphnia pulex] Back     alignment and taxonomy information
>gi|405963072|gb|EKC28676.1| Tubulin alpha-3 chain [Crassostrea gigas] Back     alignment and taxonomy information
>gi|449271034|gb|EMC81649.1| Tubulin alpha-3 chain, partial [Columba livia] Back     alignment and taxonomy information
>gi|307208702|gb|EFN85992.1| Tubulin alpha-1 chain [Harpegnathos saltator] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query864
ZFIN|ZDB-GENE-040801-77577 tuba8l3 "tubulin, alpha 8 like 0.515 0.771 0.904 3.1e-236
FB|FBgn0003884450 alphaTub84B "alpha-Tubulin at 0.513 0.986 0.950 9.2e-246
UNIPROTKB|Q2HJ86452 TUBA1D "Tubulin alpha-1D chain 0.515 0.984 0.939 1.2e-245
UNIPROTKB|F2Z4C1451 TUBA3C "Uncharacterized protei 0.515 0.986 0.939 5.1e-245
UNIPROTKB|Q71U36451 TUBA1A "Tubulin alpha-1A chain 0.515 0.986 0.939 5.1e-245
UNIPROTKB|F2Z5T5451 TUBA1B "Tubulin alpha-1A chain 0.515 0.986 0.939 5.1e-245
MGI|MGI:98869451 Tuba1a "tubulin, alpha 1A" [Mu 0.515 0.986 0.939 5.1e-245
RGD|619717451 Tuba1a "tubulin, alpha 1A" [Ra 0.515 0.986 0.939 5.1e-245
ZFIN|ZDB-GENE-090507-4451 tuba1a "tubulin, alpha 1a" [Da 0.515 0.986 0.937 6.5e-245
UNIPROTKB|F1N9J7450 LOC100859737 "Uncharacterized 0.515 0.988 0.948 8.2e-245
ZFIN|ZDB-GENE-040801-77 tuba8l3 "tubulin, alpha 8 like 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 2153 (763.0 bits), Expect = 3.1e-236, Sum P(2) = 3.1e-236
 Identities = 405/448 (90%), Positives = 419/448 (93%)

Query:     1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
             RECIS+HVGQAG Q+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct:   128 RECISMHVGQAGAQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 187

Query:    61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
             VPRA+FVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAA       GHYTIGKEI+DLVL
Sbjct:   188 VPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYAR--GHYTIGKEIIDLVL 245

Query:   121 DRIR-KLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVS 179
             DR + + ADQCTGLQGFLIFH            LLMERLSVDYGKKSKLEFAIYPAPQVS
Sbjct:   246 DRTQIQQADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVS 305

Query:   180 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 239
             TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICR+NLDIERPTYTNLNRLIGQIVSSI
Sbjct:   306 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRKNLDIERPTYTNLNRLIGQIVSSI 365

Query:   240 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEP 299
             TASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVA+ITNACFEP
Sbjct:   366 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVADITNACFEP 425

Query:   300 ANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQ 359
             +NQMVKCDPRHGKYMACC+LYRGDVVPKDVN+AIA IKTKRTIQFVDWCPTGFKVGINYQ
Sbjct:   426 SNQMVKCDPRHGKYMACCLLYRGDVVPKDVNSAIAAIKTKRTIQFVDWCPTGFKVGINYQ 485

Query:   360 PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEF 419
             PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEF
Sbjct:   486 PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEF 545

Query:   420 SEAREDLAALEKDYEEVGMDSVEGEGEE 447
             SEARED+AALEKDYEEVG DS+  E EE
Sbjct:   546 SEAREDMAALEKDYEEVGTDSMGEEDEE 573
GO:0043234 "protein complex" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0005200 "structural constituent of cytoskeleton" evidence=IEA
GO:0005525 "GTP binding" evidence=IEA
GO:0005874 "microtubule" evidence=IEA
GO:0006184 "GTP catabolic process" evidence=IEA
GO:0007017 "microtubule-based process" evidence=IEA
GO:0003924 "GTPase activity" evidence=IEA
GO:0021782 "glial cell development" evidence=IMP
GO:0042552 "myelination" evidence=IMP
GO:0000166 "nucleotide binding" evidence=IEA
GO:0005856 "cytoskeleton" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
FB|FBgn0003884 alphaTub84B "alpha-Tubulin at 84B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q2HJ86 TUBA1D "Tubulin alpha-1D chain" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4C1 TUBA3C "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q71U36 TUBA1A "Tubulin alpha-1A chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5T5 TUBA1B "Tubulin alpha-1A chain" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:98869 Tuba1a "tubulin, alpha 1A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|619717 Tuba1a "tubulin, alpha 1A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-090507-4 tuba1a "tubulin, alpha 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1N9J7 LOC100859737 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P68365TBA1C_CRIGRNo assigned EC number0.95540.51500.9910yesN/A
P68367TBA4A_MACFANo assigned EC number0.93270.51380.9910N/AN/A
P68366TBA4A_HUMANNo assigned EC number0.93270.51380.9910noN/A
P68361TBA1B_CRIGRNo assigned EC number0.96140.50810.9733yesN/A
P68360TBA1B_MERUNNo assigned EC number0.96140.50810.9733N/AN/A
P68363TBA1B_HUMANNo assigned EC number0.96140.50810.9733yesN/A
P68362TBA1A_CRIGRNo assigned EC number0.96590.50810.9733yesN/A
Q5XIF6TBA4A_RATNo assigned EC number0.93270.51380.9910noN/A
P18258TBA1_PARLINo assigned EC number0.95450.50690.9690N/AN/A
P05213TBA1B_MOUSENo assigned EC number0.96140.50810.9733yesN/A
P68369TBA1A_MOUSENo assigned EC number0.96590.50810.9733yesN/A
P68368TBA4A_MOUSENo assigned EC number0.93270.51380.9910noN/A
Q71U36TBA1A_HUMANNo assigned EC number0.96590.50810.9733yesN/A
Q6P9V9TBA1B_RATNo assigned EC number0.96140.50810.9733yesN/A
Q13748TBA3C_HUMANNo assigned EC number0.97500.50810.9755yesN/A
Q2HJ86TBA1D_BOVINNo assigned EC number0.96590.50810.9712yesN/A
P08537TBA_XENLANo assigned EC number0.95100.51500.9910N/AN/A
P02550TBA1A_PIGNo assigned EC number0.95910.50810.9733yesN/A
P09644TBA5_CHICKNo assigned EC number0.92950.50690.9776noN/A
P41383TBA2_PATVUNo assigned EC number0.95910.50810.9712N/AN/A
P36220TBA_TORMANo assigned EC number0.95910.50810.9733N/AN/A
Q28IX8TBA_XENTRNo assigned EC number0.94540.50690.9755yesN/A
P52273TBA_BOMMONo assigned EC number0.9750.50690.9733N/AN/A
A5A6J1TBA1A_PANTRNo assigned EC number0.96590.50810.9733yesN/A
Q32KN8TBA3_BOVINNo assigned EC number0.97270.50810.9755yesN/A
Q3ZCJ7TBA1C_BOVINNo assigned EC number0.94840.51380.9888yesN/A
Q94572TBA3_HOMAMNo assigned EC number0.93900.51040.9778N/AN/A
Q06331TBA_ENTDONo assigned EC number0.92720.50690.9711N/AN/A
Q2XVP4TBA1B_PIGNo assigned EC number0.96140.50810.9733yesN/A
Q6AYZ1TBA1C_RATNo assigned EC number0.95320.51500.9910yesN/A
P68373TBA1C_MOUSENo assigned EC number0.95540.51500.9910yesN/A
P68370TBA1A_RATNo assigned EC number0.96590.50810.9733yesN/A
Q4R538TBA1B_MACFANo assigned EC number0.96140.50810.9733N/AN/A
Q68FR8TBA3_RATNo assigned EC number0.97500.50810.9755yesN/A
P05214TBA3_MOUSENo assigned EC number0.97500.50810.9755yesN/A
P06603TBA1_DROMENo assigned EC number0.98180.50690.9733yesN/A
Q6PEY2TBA3E_HUMANNo assigned EC number0.96590.50810.9755yesN/A
P06604TBA2_DROMENo assigned EC number0.93730.51500.9910yesN/A
P06605TBA3_DROMENo assigned EC number0.97720.50690.9733yesN/A
P91910TBA3_CAEELNo assigned EC number0.90600.51500.9888yesN/A
Q8T6A5TBA1_APLCANo assigned EC number0.95910.50810.9733N/AN/A
P81947TBA1B_BOVINNo assigned EC number0.96140.50810.9733yesN/A
P81948TBA4A_BOVINNo assigned EC number0.93270.51380.9910noN/A
Q9BQE3TBA1C_HUMANNo assigned EC number0.95290.51380.9888yesN/A
Q25008TBA1_HOMAMNo assigned EC number0.93280.51500.9866N/AN/A
P18288TBAT_ONCMYNo assigned EC number0.97270.50810.9755N/AN/A
Q91060TBA_NOTVINo assigned EC number0.94090.50690.9733N/AN/A
Q8WQ47TBA_LEPDSNo assigned EC number0.94220.51500.9888N/AN/A
P30436TBA_ONCKENo assigned EC number0.93870.50810.9755N/AN/A
Q5R1W4TBA1B_PANTRNo assigned EC number0.95910.50810.9733yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query864
cd02186434 cd02186, alpha_tubulin, The tubulin superfamily in 0.0
cd02186434 cd02186, alpha_tubulin, The tubulin superfamily in 0.0
PTZ00335448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 0.0
PTZ00335448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 0.0
PLN00221450 PLN00221, PLN00221, tubulin alpha chain; Provision 0.0
PLN00221450 PLN00221, PLN00221, tubulin alpha chain; Provision 0.0
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 0.0
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 0.0
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 1e-165
cd02187425 cd02187, beta_tubulin, The tubulin superfamily inc 1e-151
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 1e-139
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 1e-139
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 1e-137
PTZ00010445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 1e-137
cd02187425 cd02187, beta_tubulin, The tubulin superfamily inc 1e-135
PLN00220447 PLN00220, PLN00220, tubulin beta chain; Provisiona 1e-131
PTZ00010445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 1e-121
PLN00220447 PLN00220, PLN00220, tubulin beta chain; Provisiona 1e-115
cd02188431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 5e-98
cd02190379 cd02190, epsilon_tubulin, The tubulin superfamily 6e-92
cd02188431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 9e-91
PTZ00387465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 1e-87
PLN00222454 PLN00222, PLN00222, tubulin gamma chain; Provision 1e-82
cd02190379 cd02190, epsilon_tubulin, The tubulin superfamily 6e-82
PTZ00387465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 1e-81
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 1e-78
PLN00222454 PLN00222, PLN00222, tubulin gamma chain; Provision 1e-77
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 2e-77
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 1e-72
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 5e-71
pfam03953126 pfam03953, Tubulin_C, Tubulin C-terminal domain 1e-69
pfam03953126 pfam03953, Tubulin_C, Tubulin C-terminal domain 6e-59
cd02189446 cd02189, delta_tubulin, The tubulin superfamily in 3e-52
cd02189446 cd02189, delta_tubulin, The tubulin superfamily in 6e-47
smart00865120 smart00865, Tubulin_C, Tubulin/FtsZ family, C-term 2e-25
smart00865120 smart00865, Tubulin_C, Tubulin/FtsZ family, C-term 6e-22
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information 
 Score =  978 bits (2530), Expect = 0.0
 Identities = 401/437 (91%), Positives = 424/437 (97%), Gaps = 4/437 (0%)

Query: 1   RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
           RE ISIH+GQAG+QIGNACWELYCLEHGIQPDGQMPSDKTIGGGDD+FNTFFSETG+GKH
Sbjct: 1   REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKH 60

Query: 61  VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYS-GHYTIGKEIVDLV 119
           VPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAA     ++ GHYTIGKEI+DLV
Sbjct: 61  VPRAVFIDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAA---NNFARGHYTIGKEIIDLV 117

Query: 120 LDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVS 179
           LDRIRKLAD CTGLQGFLIFHSFGGGTGSGF SLL+ERLSVDYGKKSKLEF +YP+PQVS
Sbjct: 118 LDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKSKLEFTVYPSPQVS 177

Query: 180 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 239
           TAVVEPYNS+LTTH+ LEHSDC+FMVDNEAIYDICRRNLDIERPTYTNLNRLI Q+VSSI
Sbjct: 178 TAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSI 237

Query: 240 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEP 299
           TASLRFDGALNVDL EFQTNLVPYPRIHFPLV+YAP+ISAEKAYHEQLSVAEITNACFEP
Sbjct: 238 TASLRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEP 297

Query: 300 ANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQ 359
           ANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFKVGINYQ
Sbjct: 298 ANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQ 357

Query: 360 PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEF 419
           PPTVVPGGDLAKVQRAVCMLSNTTAIAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEF
Sbjct: 358 PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEF 417

Query: 420 SEAREDLAALEKDYEEV 436
           SEAREDLAALEKDYEEV
Sbjct: 418 SEAREDLAALEKDYEEV 434

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Length = 434
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain Back     alignment and domain information
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 864
COG5023443 Tubulin [Cytoskeleton] 100.0
COG5023443 Tubulin [Cytoskeleton] 100.0
PLN00221450 tubulin alpha chain; Provisional 100.0
PTZ00335448 tubulin alpha chain; Provisional 100.0
cd02186434 alpha_tubulin The tubulin superfamily includes fiv 100.0
cd02188431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
PTZ00010445 tubulin beta chain; Provisional 100.0
PLN00222454 tubulin gamma chain; Provisional 100.0
cd02187425 beta_tubulin The tubulin superfamily includes five 100.0
PLN00220447 tubulin beta chain; Provisional 100.0
PTZ00387465 epsilon tubulin; Provisional 100.0
KOG1374|consensus448 100.0
PLN00221450 tubulin alpha chain; Provisional 100.0
PTZ00335448 tubulin alpha chain; Provisional 100.0
cd02190379 epsilon_tubulin The tubulin superfamily includes f 100.0
cd02189446 delta_tubulin The tubulin superfamily includes fiv 100.0
PLN00222454 tubulin gamma chain; Provisional 100.0
cd02188431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
PTZ00010445 tubulin beta chain; Provisional 100.0
cd02186434 alpha_tubulin The tubulin superfamily includes fiv 100.0
KOG1374|consensus448 100.0
PTZ00387465 epsilon tubulin; Provisional 100.0
PLN00220447 tubulin beta chain; Provisional 100.0
cd02187425 beta_tubulin The tubulin superfamily includes five 100.0
cd06059382 Tubulin The tubulin superfamily includes five dist 100.0
KOG1376|consensus407 100.0
cd02189446 delta_tubulin The tubulin superfamily includes fiv 100.0
cd02190379 epsilon_tubulin The tubulin superfamily includes f 100.0
KOG1376|consensus407 100.0
cd06059382 Tubulin The tubulin superfamily includes five dist 100.0
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
KOG1375|consensus369 100.0
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
KOG1375|consensus369 100.0
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 100.0
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 100.0
cd06060493 misato Human Misato shows similarity with Tubulin/ 100.0
cd06060493 misato Human Misato shows similarity with Tubulin/ 100.0
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 100.0
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 100.0
cd02202349 FtsZ_type2 FtsZ is a GTPase that is similar to the 99.97
cd02202349 FtsZ_type2 FtsZ is a GTPase that is similar to the 99.96
KOG2530|consensus483 99.96
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.95
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.94
TIGR00065349 ftsZ cell division protein FtsZ. This family consi 99.92
KOG2530|consensus483 99.92
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.92
TIGR00065349 ftsZ cell division protein FtsZ. This family consi 99.92
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.91
PRK13018378 cell division protein FtsZ; Provisional 99.9
PRK13018378 cell division protein FtsZ; Provisional 99.89
PF03953126 Tubulin_C: Tubulin C-terminal domain; InterPro: IP 99.89
PF03953126 Tubulin_C: Tubulin C-terminal domain; InterPro: IP 99.86
PRK09330384 cell division protein FtsZ; Validated 99.85
PRK09330384 cell division protein FtsZ; Validated 99.84
PF14881180 Tubulin_3: Tubulin domain 99.8
PF14881180 Tubulin_3: Tubulin domain 99.68
COG0206338 FtsZ Cell division GTPase [Cell division and chrom 99.35
COG0206338 FtsZ Cell division GTPase [Cell division and chrom 99.28
PF10644115 Misat_Tub_SegII: Misato Segment II tubulin-like do 99.15
PF10644115 Misat_Tub_SegII: Misato Segment II tubulin-like do 98.94
smart00865120 Tubulin_C Tubulin/FtsZ family, C-terminal domain. 98.45
smart00865120 Tubulin_C Tubulin/FtsZ family, C-terminal domain. 98.12
PF13809345 Tubulin_2: Tubulin like 97.01
PF13809345 Tubulin_2: Tubulin like 96.96
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-124  Score=982.10  Aligned_cols=437  Identities=62%  Similarity=1.081  Sum_probs=422.5

Q ss_pred             CeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCcccccccCCCCccccceeeeCCCCceeeeeecc
Q psy15389          1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG   80 (864)
Q Consensus         1 rEiitiq~Gq~GnqIG~~fW~~~~~e~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailvDle~~~i~~~~~~   80 (864)
                      |||||||+||||||||++||+++|+||||+++|..+...  +..++++++||+|...+|||||||+|||||+||+.+++|
T Consensus         2 REIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~--~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g   79 (443)
T COG5023           2 REIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSS--DEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNG   79 (443)
T ss_pred             ceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCc--ccccccccceeeecCCCccccceEEEecCcchHhhhccC
Confidence            899999999999999999999999999999999965433  334688999999999999999999999999999999999


Q ss_pred             cccccCCCCcccccccccccccCCcccccccchhhHHHHHHHHHHhhhccCCCCceeEEeecCCccccChHHHHHHHHHH
Q psy15389         81 TYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSV  160 (864)
Q Consensus        81 ~~~~~~~~~~~~~~~~gsgnn~a~~~G~~~~G~~~~e~~~d~iR~~vE~cD~lqgf~i~~sl~GGTGSGlgs~lle~L~d  160 (864)
                      +++.+|+|++++.+++|||||||  +|+|++|++..|+++|+|||++|.||.||||+++||+|||||||+|+.|+|+|++
T Consensus        80 ~y~~lf~Pen~i~gkegAgNnwA--~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~  157 (443)
T COG5023          80 PYGSLFHPENIIFGKEGAGNNWA--RGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLRE  157 (443)
T ss_pred             ccccccChhheeecccccccccc--ccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHH
Confidence            99999999999999999999999  9999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCcceeEEEEecCCCCCcccccchhhHHHHHHhhhcCCEEEEEechhHHHhhhhcCCCCCCChhhHHHHHHHHHhhhc
Q psy15389        161 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT  240 (864)
Q Consensus       161 eyp~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~lia~~i~~~t  240 (864)
                      |||||.+.+|+|+|.++.++++|||||++|++++|.|+||+++++||+||+++|.+.|++++|+|.++|+|||++|+++|
T Consensus       158 eypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvT  237 (443)
T COG5023         158 EYPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVT  237 (443)
T ss_pred             hcchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCChhhhhhcCcCCCCcccCccccccccchhhhhhcccCHHHHHHHhcCCCCceeecCCCCCchhhhhhhh
Q psy15389        241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY  320 (864)
Q Consensus       241 ~~~rf~g~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~i~~~~~~~~~~~~~~~~~~~~~ls~~~~~  320 (864)
                      .++||||++|.||.+|.+|||||||+||++++|+|+++..+..+++.|+.++++++|++.|+|++|+|++|+|+++++++
T Consensus       238 tslRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~  317 (443)
T COG5023         238 TSLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLF  317 (443)
T ss_pred             heeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHhhccCcccccccCCCCceEEEecCCCcccCCCCcccccceEEEeeccHHHHHHHHHHHHHHHHHH
Q psy15389        321 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY  400 (864)
Q Consensus       321 RG~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~v~~~~~~p~~~~~~~~~~~~~s~~~lsNst~i~~~l~~l~~~f~~m~  400 (864)
                      ||+++++++.+++.+++.|+.++|++|+|+++++++|+.+|...     .+.++++|+|+|+|+|...|+++.+||++||
T Consensus       318 rG~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~-----~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf  392 (443)
T COG5023         318 RGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEP-----AEVDVSGCMLSNTTSIAEAFKRIDDQFDLMF  392 (443)
T ss_pred             hcCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCccc-----ccceeeeEeecCcHHHHHHHHHhhhHHHHHH
Confidence            99999999999999999999999999999999999999988433     3567899999999999999999999999999


Q ss_pred             hcccceeccccCCCCcccHHHHHHHHHHHHHHHHHhcCCCCCCccc
Q psy15389        401 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSVEGEGE  446 (864)
Q Consensus       401 ~rrAflH~Y~~eGmee~eF~Ea~~~l~~li~~Y~~~~~~~~~~~~~  446 (864)
                      +||||||||.++||||+||.||++.+++|.++|++++++...++++
T Consensus       393 ~krAFlhwY~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~~  438 (443)
T COG5023         393 KKRAFLHWYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEE  438 (443)
T ss_pred             HhhHHHHHHhhccCcccchhhHHHHHHHHHHHHHHhccccccchhh
Confidence            9999999999999999999999999999999999999887766644

>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information
>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>KOG1374|consensus Back     alignment and domain information
>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1374|consensus Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376|consensus Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376|consensus Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>KOG1375|consensus Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>KOG1375|consensus Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>KOG2530|consensus Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>KOG2530|consensus Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] Back     alignment and domain information
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] Back     alignment and domain information
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>PF13809 Tubulin_2: Tubulin like Back     alignment and domain information
>PF13809 Tubulin_2: Tubulin like Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query864
1z2b_A448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 0.0
1z2b_A448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 0.0
3hkb_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 0.0
3hkb_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 0.0
4i4t_A450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 0.0
4i4t_A450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 0.0
3ryc_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 0.0
3ryc_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 0.0
1sa0_A451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 0.0
1sa0_A451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 0.0
1ffx_A451 Tubulin:stathmin-Like Domain Complex Length = 451 0.0
1ffx_A451 Tubulin:stathmin-Like Domain Complex Length = 451 0.0
3du7_A449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 0.0
3du7_A449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 0.0
2xrp_B452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 0.0
2xrp_B452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 0.0
1jff_A451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 0.0
1jff_A451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 0.0
1tub_A440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 0.0
1tub_A440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 0.0
4drx_A437 Gtp-Tubulin In Complex With A Darpin Length = 437 0.0
4drx_A437 Gtp-Tubulin In Complex With A Darpin Length = 437 0.0
4ffb_A447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 0.0
4ffb_A447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 1e-160
4f61_B445 Tubulin:stathmin-Like Domain Complex Length = 445 6e-93
4f61_B445 Tubulin:stathmin-Like Domain Complex Length = 445 7e-82
3ryc_B445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 6e-93
3ryc_B445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 6e-82
3du7_B445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 7e-93
3du7_B445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 9e-82
4drx_B431 Gtp-Tubulin In Complex With A Darpin Length = 431 8e-93
4drx_B431 Gtp-Tubulin In Complex With A Darpin Length = 431 1e-81
1tub_B427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 9e-93
1tub_B427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 1e-81
4i4t_B445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 9e-93
4i4t_B445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 1e-81
1ffx_B445 Tubulin:stathmin-Like Domain Complex Length = 445 9e-93
1ffx_B445 Tubulin:stathmin-Like Domain Complex Length = 445 1e-81
2xrp_A445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 9e-93
2xrp_A445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 1e-81
1z2b_B445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 1e-92
1z2b_B445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 1e-81
4ffb_B463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 6e-92
4ffb_B463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 1e-79
2bto_A473 Structure Of Btuba From Prosthecobacter Dejongeii L 2e-76
2bto_A473 Structure Of Btuba From Prosthecobacter Dejongeii L 1e-68
2btq_B426 Structure Of Btubab Heterodimer From Prosthecobacte 4e-74
2btq_B426 Structure Of Btubab Heterodimer From Prosthecobacte 2e-68
3cb2_A475 Crystal Structure Of Human Gamma-Tubulin Bound To G 4e-55
3cb2_A475 Crystal Structure Of Human Gamma-Tubulin Bound To G 3e-52
1z5v_A474 Crystal Structure Of Human Gamma-Tubulin Bound To G 4e-55
1z5v_A474 Crystal Structure Of Human Gamma-Tubulin Bound To G 3e-52
2e4h_B36 Solution Structure Of Cytoskeletal Protein In Compl 8e-06
2e4h_B36 Solution Structure Of Cytoskeletal Protein In Compl 2e-05
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure 
Iteration: 1

 Score =  868 bits (2243), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/446 (93%), Positives = 423/446 (94%), Gaps = 2/446 (0%)
Query: 1   RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
           RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2   RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61
Query: 61  VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVL 120
           VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAA       GHYTIGKEI+DLVL
Sbjct: 62  VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYAR--GHYTIGKEIIDLVL 119
Query: 121 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 180
           DRIRKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEF+IYPAPQVST
Sbjct: 120 DRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
Query: 181 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 240
           AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT
Sbjct: 180 AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 239
Query: 241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 300
           ASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPA
Sbjct: 240 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299
Query: 301 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 360
           NQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKR+IQFVDWCPTGFKVGINYQP
Sbjct: 300 NQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQP 359
Query: 361 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 420
           PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS
Sbjct: 360 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 419
Query: 421 EAREDLAALEKDYEEVGMDSVEGEGE 446
           EARED+AALEKDYEEVG+DS E E E
Sbjct: 420 EAREDMAALEKDYEEVGIDSYEDEDE 445
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure
>pdb|2E4H|B Chain B, Solution Structure Of Cytoskeletal Protein In Complex With Tubulin Tail Length = 36 Back     alignment and structure
>pdb|2E4H|B Chain B, Solution Structure Of Cytoskeletal Protein In Complex With Tubulin Tail Length = 36 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query864
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 0.0
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 0.0
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 0.0
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 0.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 0.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 0.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 0.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 0.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 0.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 0.0
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 2e-12
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 1e-06
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 2e-06
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
 Score =  811 bits (2096), Expect = 0.0
 Identities = 431/451 (95%), Positives = 439/451 (97%), Gaps = 10/451 (2%)

Query: 1   RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
           RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2   RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61

Query: 61  VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDA----ARQIGEYSGHYTIGKEIV 116
           VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDA    AR      GHYTIGKEI+
Sbjct: 62  VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYAR------GHYTIGKEII 115

Query: 117 DLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAP 176
           DLVLDRIRKLADQCTGLQGFL+FHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF+IYPAP
Sbjct: 116 DLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAP 175

Query: 177 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIV 236
           QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIV
Sbjct: 176 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIV 235

Query: 237 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNAC 296
           SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNAC
Sbjct: 236 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNAC 295

Query: 297 FEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGI 356
           FEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKR+IQFVDWCPTGFKVGI
Sbjct: 296 FEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGI 355

Query: 357 NYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE 416
           NYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE
Sbjct: 356 NYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE 415

Query: 417 GEFSEAREDLAALEKDYEEVGMDSVEGEGEE 447
           GEFSEARED+AALEKDYEEVG+DSVEGEGEE
Sbjct: 416 GEFSEAREDMAALEKDYEEVGVDSVEGEGEE 446
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Length = 36 Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Length = 36 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Length = 360 Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Length = 360 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query864
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
1w5f_A353 Cell division protein FTSZ; complete proteome, GTP 100.0
2vap_A364 FTSZ, cell division protein FTSZ homolog 1; polyme 100.0
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
1rq2_A382 Cell division protein FTSZ; cell cycle, tubulin, G 100.0
2r75_1338 Cell division protein FTSZ; GTPase, tubulin-like, 100.0
2vaw_A394 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
2vxy_A382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 100.0
1w5f_A353 Cell division protein FTSZ; complete proteome, GTP 100.0
2r75_1338 Cell division protein FTSZ; GTPase, tubulin-like, 100.0
2vap_A364 FTSZ, cell division protein FTSZ homolog 1; polyme 100.0
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
2vaw_A394 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
1rq2_A382 Cell division protein FTSZ; cell cycle, tubulin, G 100.0
2vxy_A382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 100.0
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 100.0
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 100.0
4dxd_A396 Cell division protein FTSZ; rossmann fold, GTPase, 99.97
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.96
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.96
4dxd_A396 Cell division protein FTSZ; rossmann fold, GTPase, 99.96
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 99.64
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 99.63
3r4v_A315 Putative uncharacterized protein; tubulin, unknown 99.06
3r4v_A315 Putative uncharacterized protein; tubulin, unknown 99.0
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 94.9
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
Probab=100.00  E-value=7.9e-116  Score=987.08  Aligned_cols=440  Identities=97%  Similarity=1.505  Sum_probs=423.1

Q ss_pred             CeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCcccccccCCCCccccceeeeCCCCceeeeeecc
Q psy15389          1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTG   80 (864)
Q Consensus         1 rEiitiq~Gq~GnqIG~~fW~~~~~e~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailvDle~~~i~~~~~~   80 (864)
                      ||||+||+||||||||++||+++|.||+|+++|.++.+.+....++++++||+|++.|+|+||||||||||+||+++++|
T Consensus         2 rEii~iqvGQcGnQIG~~~We~~~~EHgi~~~g~~~~~~~~~~~~~~~~~fF~e~~~gk~vPRavlvDlEp~vid~v~~g   81 (451)
T 3ryc_A            2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTG   81 (451)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHHHHHHTCCTTSCCCCC-------CGGGGTEEECTTSCEEESEEEEESSSHHHHHHHHS
T ss_pred             ceEEEEeccCchhHHHHHHHHHHHhhcCCCCCCCcCCcccccccccchhhhcccCCCCccccceeeecCCcchhheeeec
Confidence            89999999999999999999999999999999998766544445789999999999999999999999999999999999


Q ss_pred             cccccCCCCcccccccccccccCCcccccccchhhHHHHHHHHHHhhhccCCCCceeEEeecCCccccChHHHHHHHHHH
Q psy15389         81 TYRQLFHPEQLITGKEDAARQIGEYSGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSV  160 (864)
Q Consensus        81 ~~~~~~~~~~~~~~~~gsgnn~a~~~G~~~~G~~~~e~~~d~iR~~vE~cD~lqgf~i~~sl~GGTGSGlgs~lle~L~d  160 (864)
                      +++++|+|++++++++|||||||  +|||+.|+++.|+++|+||+++|+||+||||+++||+|||||||+|+.|+|+|+|
T Consensus        82 ~~~~lf~p~~~i~gk~gAgNNwA--~G~yt~G~e~~d~v~d~IRk~~E~cD~lqGF~i~hSlgGGTGSG~gs~lle~L~~  159 (451)
T 3ryc_A           82 TYRQLFHPEQLITGKEDAANNYA--RGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSV  159 (451)
T ss_dssp             TTTTTSCGGGEEECSSCCTTCHH--HHHHTSHHHHHHHHHHHHHHHHHTCSSCCEEEEEEESSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccCHHHeeeccccccCCCC--eeecccchHhHHHHHHHHHHHHHcCCCccceEEEeccCCCCCccHHHHHHHHHHH
Confidence            99999999999999999999999  9999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCcceeEEEEecCCCCCcccccchhhHHHHHHhhhcCCEEEEEechhHHHhhhhcCCCCCCChhhHHHHHHHHHhhhc
Q psy15389        161 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT  240 (864)
Q Consensus       161 eyp~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~lia~~i~~~t  240 (864)
                      +||++.+++++|+|++..++++|+|||++|++++|.|++|+++++||++|+++|.+.+++..|+|.++|++||++|+++|
T Consensus       160 ey~kk~~~~~~v~P~~~~s~~vvepYNa~Lsl~~L~e~sD~~~~idNeaL~~ic~~~l~i~~p~y~~lN~lIa~~~s~iT  239 (451)
T 3ryc_A          160 DYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSIT  239 (451)
T ss_dssp             HTTTCEEEEEEEECCTTTCCCTTHHHHHHHHHHHHGGGCSEEEEEEHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             hcCcceEEEEEEecCCCcccccceehHHHHHHHHHHhcccceeEeccHHHHHHHHHhccCCCCCchhhHHHHHhcccccc
Confidence            99999999999999988899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCChhhhhhcCcCCCCcccCccccccccchhhhhhcccCHHHHHHHhcCCCCceeecCCCCCchhhhhhhh
Q psy15389        241 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY  320 (864)
Q Consensus       241 ~~~rf~g~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~i~~~~~~~~~~~~~~~~~~~~~ls~~~~~  320 (864)
                      .++||||.+|+||.+|.+||||||++||++++|+|+++..+..++++++.+|++++|++.|+|++|+|++|+|+|+++++
T Consensus       240 ~slRf~G~lN~Dl~~l~tnLVP~PrlHF~~~s~aPl~s~~~~~~~~~sv~elt~~~f~~~n~m~~~dp~~gky~a~~~~~  319 (451)
T 3ryc_A          240 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLY  319 (451)
T ss_dssp             HHHHTTCSSSCSHHHHHHHHCSSSSCCCCEEEEECCCBSSSCCCCCCCHHHHHHHTTCGGGBSSCCCGGGSCEEEEEEEE
T ss_pred             cccccCcccccCHHHHhhccCCCCceeeeccccCccccccccccccCCHHHHHHHHhccccceEecCCCCCchheehhhc
Confidence            99999999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHhhccCcccccccCCCCceEEEecCCCcccCCCCcccccceEEEeeccHHHHHHHHHHHHHHHHHH
Q psy15389        321 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY  400 (864)
Q Consensus       321 RG~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~v~~~~~~p~~~~~~~~~~~~~s~~~lsNst~i~~~l~~l~~~f~~m~  400 (864)
                      ||+++++++.+++..+|.|++++|++|+|+++|+++|++||...|+.++++.++++++|+|+|+|..+|+++.+||++||
T Consensus       320 RG~v~~~dv~~~i~~ik~k~~~~Fv~W~p~~~kv~i~~~pP~~~p~~~la~~~~s~~~lsNsTaI~~~f~rl~~kFd~m~  399 (451)
T 3ryc_A          320 RGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY  399 (451)
T ss_dssp             EESCCHHHHHHHHHHHHHHCCCCBCTTSCEEEEEEEECSCCCCCTTSSBCCCSEEEEEEEEEGGGHHHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHhhcCCcceEEEccCceeeeeeccCCccCCCccccccceeeEEecCchHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccceeccccCCCCcccHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15389        401 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSVE  442 (864)
Q Consensus       401 ~rrAflH~Y~~eGmee~eF~Ea~~~l~~li~~Y~~~~~~~~~  442 (864)
                      +||||||||++|||||+||.||+++|++|+++|++++.+..+
T Consensus       400 ~krAFvHwY~~eGmee~eF~EA~e~l~~L~~eY~~~~~~~~~  441 (451)
T 3ryc_A          400 AKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVE  441 (451)
T ss_dssp             TTTTTTHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred             hcceeHhhhcCCccchhhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            999999999999999999999999999999999999876543
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Back     alignment and structure
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 864
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 1e-130
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 1e-125
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 1e-127
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 1e-122
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 1e-119
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 1e-114
d1tuba2195 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S 1e-110
d1tuba2195 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S 1e-62
d1tubb2184 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su 9e-91
d1tubb2184 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su 5e-52
d2btoa2180 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth 6e-81
d2btoa2180 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth 5e-43
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  387 bits (994), Expect = e-130
 Identities = 239/244 (97%), Positives = 243/244 (99%)

Query: 494 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 553
           RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 2   RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 61

Query: 554 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 613
           VPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDR
Sbjct: 62  VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 121

Query: 614 IRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 673
           IRKLADQCTGLQGF +FHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF+IYPAPQVSTAV
Sbjct: 122 IRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181

Query: 674 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 733
           VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS
Sbjct: 182 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 241

Query: 734 LRFD 737
           LRFD
Sbjct: 242 LRFD 245
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195 Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195 Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184 Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184 Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180 Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query864
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1tuba2195 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d1tubb2184 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d2btoa2180 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1tuba2195 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 99.94
d1tubb2184 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 99.92
d2btoa2180 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 99.87
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 99.6
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 99.58
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 99.58
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 99.56
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 99.56
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 99.56
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 99.54
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 99.52
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=3.3e-75  Score=606.79  Aligned_cols=245  Identities=98%  Similarity=1.502  Sum_probs=238.7

Q ss_pred             ceeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCccccccccCCCCCcccceeEeCCCCCeeccccc
Q psy15389        493 SRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRT  572 (864)
Q Consensus       493 ~rEiItiqvGqcGnqIG~~fW~~~~~eh~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~  572 (864)
                      |||||+|||||||||||.+||+++++||+|+++|....+......++++++||+|.++++|+||||+||+||+||+++++
T Consensus         1 MrEII~iqvGQcGnQIG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRavlvD~E~~vI~~i~~   80 (245)
T d1tuba1           1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT   80 (245)
T ss_dssp             CCCCCEECCSHHHHHHHHHHHHHHTTTCCTTTCCCCSCCTTSSTTCCCSCCSSCSSSCTTTSCSCCEEESSHHHHHHHSG
T ss_pred             CCcEEEEeccCHHHHHHHHHHHHHHHHhCcCCCCCccCccccccccccchhhhhcccCCccccceeEecCCcceeeeecc
Confidence            89999999999999999999999999999999999887766666678899999999999999999999999999999999


Q ss_pred             ccccccCCCcceeeccccCcCCCcccccccchhhHHHHHHHHHHhhhccCCccceeeEeecCCCccccchHHHHHHHHhh
Q psy15389        573 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVD  652 (864)
Q Consensus       573 ~~~~~lf~~~~~~~~~~gagnnwa~G~~~~G~~~~~~~~d~ir~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle~L~de  652 (864)
                      ++++++|+|++++++++|+|||||+|||.+|+++.|+++|.|||++|+||++|||+++||+|||||||+||+|+|.|+|+
T Consensus        81 ~~~~~~f~~~~~i~~~~gsgNNwA~Gy~~~G~~~~d~i~d~iRk~~E~cD~l~gf~i~hSl~GGTGSGlGs~l~e~l~d~  160 (245)
T d1tuba1          81 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVD  160 (245)
T ss_dssp             GGCSCCCCSSSEEECCSCCCCSSSTTTTSHHHHTTHHHHHHHHHHTTSSSCCCCEEEECCSSCGGGTHHHHHHTHHHHHH
T ss_pred             CcchhccCccccccCCCCcccchHhhhhccchhhHHHHHHHHHHHHHhCCCcCceeeeeecCCcCcCchhHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCcceEEEEEecCCCCCCcccchhhHHHHHhhhhhccCccccccchHHHHHhhccCCCCCCCcchhhHHHHHHhhcccc
Q psy15389        653 YGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA  732 (864)
Q Consensus       653 yp~~~i~~~~v~P~~~~~~~~v~~YNs~Lsl~~L~e~sd~vi~~dN~al~~i~~~~l~~~~~~~~~~N~~Ia~~is~~t~  732 (864)
                      ||++.+++++|||+++.++++|||||++|+|++|.+++|++++|||++|+++|.+.++++.|+|++||++||++|+++|+
T Consensus       161 yp~~~~~~~~V~P~~~~~~~vvqpYNtvLsl~~L~~~sD~v~~~dN~al~~i~~~~l~i~~~s~~~lN~via~~ls~~T~  240 (245)
T d1tuba1         161 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA  240 (245)
T ss_dssp             TTTSCEEEEECCCCSSCSTTTTHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred             cccccccceEEeccccCCCcccccchhhhhhHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhh
Confidence            99999999999999877999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccC
Q psy15389        733 SLRFD  737 (864)
Q Consensus       733 ~~rf~  737 (864)
                      ++||.
T Consensus       241 ~~RF~  245 (245)
T d1tuba1         241 SLRFD  245 (245)
T ss_dssp             TTTSS
T ss_pred             hccCC
Confidence            99994
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure