Psyllid ID: psy1545
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 454 | 2.2.26 [Sep-21-2011] | |||||||
| Q6PBT5 | 490 | Pyridine nucleotide-disul | yes | N/A | 0.986 | 0.914 | 0.465 | 1e-119 | |
| Q5REJ2 | 500 | Pyridine nucleotide-disul | yes | N/A | 0.964 | 0.876 | 0.451 | 1e-115 | |
| Q8WU10 | 500 | Pyridine nucleotide-disul | yes | N/A | 0.962 | 0.874 | 0.450 | 1e-115 | |
| A7YVH9 | 502 | Pyridine nucleotide-disul | yes | N/A | 0.958 | 0.866 | 0.453 | 1e-112 | |
| Q68FS6 | 498 | Pyridine nucleotide-disul | yes | N/A | 0.962 | 0.877 | 0.443 | 1e-110 | |
| Q3TMV7 | 498 | Pyridine nucleotide-disul | yes | N/A | 0.966 | 0.881 | 0.437 | 1e-110 | |
| Q54H36 | 546 | Pyridine nucleotide-disul | yes | N/A | 0.986 | 0.820 | 0.360 | 1e-90 | |
| A0KEJ2 | 388 | Nitric oxide reductase Fl | yes | N/A | 0.422 | 0.494 | 0.259 | 2e-08 | |
| P42435 | 805 | Nitrite reductase [NAD(P) | yes | N/A | 0.832 | 0.469 | 0.222 | 3e-08 | |
| Q5JGP4 | 442 | Coenzyme A disulfide redu | no | N/A | 0.729 | 0.748 | 0.220 | 8e-08 |
| >sp|Q6PBT5|PYRD1_DANRE Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 OS=Danio rerio GN=pyroxd1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 430 bits (1106), Expect = e-119, Method: Compositional matrix adjust.
Identities = 223/479 (46%), Positives = 312/479 (65%), Gaps = 31/479 (6%)
Query: 5 YLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDAN- 63
++I+GGGIAGV+C E +A P + + L+T S +VK VT V+K L + +EE +
Sbjct: 14 FVIVGGGIAGVTCAEQIASQFPSDEVCLLTASPLVKKVTNFRQVSKTLEEFDIEEQPSRV 73
Query: 64 ---KFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWY-SPHVITI 119
K+ L V+ V + R + + TE R Y+ LC+C+G P+ + +PHV+ I
Sbjct: 74 LEEKYPNL-KVLQSAVRLLKAREHLLETEDGQRFFYRKLCLCSGGRPKLLSKDNPHVLGI 132
Query: 120 RDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAE 179
RDTDS Q++L +AK+IVVIGNGGIA ELV+E+ +++W VKDK I TF D GAA+
Sbjct: 133 RDTDSAQEFQKRLSTAKRIVVIGNGGIALELVYEVEGCEVIWAVKDKAIGNTFFDAGAAQ 192
Query: 180 FFQDSINKTNTAKPETIFKRMRYNT----------GGEKGPSLGPDWHTQVNLHGSSRDT 229
F S+ + + + ++ KR RY T E G +LGPDWH + L G+ +
Sbjct: 193 FLIPSL-EADRREASSVCKRARYTTDSSAAGHSGSSSELGSALGPDWHEGIELRGAKQSV 251
Query: 230 K-ITIEYSCEVERI------VDSEDDTCNA-------YVKLTNGHTHACDIVVSAIGVVP 275
+ + IEY CEVE+I + SE T A YV+LTNG + CD +VSA GVVP
Sbjct: 252 RGVHIEYECEVEQIYTQQELLQSEHGTKTAELGVWPAYVQLTNGKIYGCDFIVSATGVVP 311
Query: 276 NSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKH 335
N++ + G F++A D G+ V++ M+TS ++V+AAGDVC+ W+ + W QMRLWTQA+
Sbjct: 312 NTDPFLPGNNFDVAADLGLLVDDHMRTSEADVFAAGDVCSAGWEPSSIWQQMRLWTQARQ 371
Query: 336 MGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVT 395
MG YAA+CM V +EP+ DF FE+F+H+TKFF YKV+LLG FN Q L D+E+L+R T
Sbjct: 372 MGWYAARCMAADVLDEPIELDFCFELFSHITKFFNYKVVLLGKFNAQGLGQDHELLVRCT 431
Query: 396 RGEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDYFD 454
+G+EY+K+V+ GRM GAVLIGET++EE ENLILNQ+DLT ++LLNPNIDI+DYFD
Sbjct: 432 KGQEYVKVVLSGGRMVGAVLIGETDLEETFENLILNQMDLTRYGEELLNPNIDIEDYFD 490
|
Danio rerio (taxid: 7955) EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: - |
| >sp|Q5REJ2|PYRD1_PONAB Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 OS=Pongo abelii GN=PYROXD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/478 (45%), Positives = 295/478 (61%), Gaps = 40/478 (8%)
Query: 16 SCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEGL---CTVI 72
+C E LA P E I LVT S ++KAVT ++K+L + VEE + E VI
Sbjct: 24 TCAEQLATHFPSEDILLVTASPVIKAVTNFKQISKILEEFDVEEQSSTMLEKRFPNIKVI 83
Query: 73 VDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWY-SPHVITIRDTDSVAVLQEK 131
V + +C++TE N+ YK LC+C GA P+ I +P+V+ IRDTDS Q++
Sbjct: 84 ESGVKQLKSEEHCIVTEDGNQHVYKKLCLCAGAKPKLICEGNPYVLGIRDTDSAQEFQKQ 143
Query: 132 LKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTA 191
L AK+I++IGNGGIA ELV+E+ +++W +KDK I TF D GAAEF + +
Sbjct: 144 LIKAKRIMIIGNGGIALELVYEIEGCEVIWAIKDKAIGNTFFDAGAAEFLTSKL-IAEKS 202
Query: 192 KPETIFKRMRYNTGGEK------------GPSLGPDWHTQVNLHGSSR-DTKITIEYSCE 238
+ + KR RY T G K G +LGPDWH +NL G+ KI +E CE
Sbjct: 203 EAKIAHKRTRYTTEGRKKEARSKCKSDNVGSALGPDWHEGLNLKGTKEFSHKIHLETMCE 262
Query: 239 VERI----------------------VDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276
V++I V ++ + YV+LTN + CD +VSA GV PN
Sbjct: 263 VKKIYLQDEFRILKKKSFSFPRDHKSVTTDTEMWPVYVELTNEKIYGCDFIVSATGVTPN 322
Query: 277 SNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHM 336
+HG FEL D G+ V++ M TS+ +VYAAGD+CT +W L+ W QMRLWTQA+ M
Sbjct: 323 VEPFLHGNSFELGEDGGLKVDDHMHTSLPDVYAAGDICTTAWQLSPVWQQMRLWTQARQM 382
Query: 337 GTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTR 396
G YAAKCM A + + DFSFE+F H+TKFF YKV+LLG +N Q L +D+E++LR T+
Sbjct: 383 GWYAAKCMAAASSGDSIDMDFSFELFAHVTKFFNYKVVLLGKYNAQGLGSDHELMLRCTK 442
Query: 397 GEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDYFD 454
G+EY+K+VM++GRM GAVLIGET++EE ENLILNQ++L+ +DLL+PNIDI+DYFD
Sbjct: 443 GQEYVKVVMQNGRMMGAVLIGETDLEETFENLILNQMNLSSYGEDLLDPNIDIEDYFD 500
|
Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: - |
| >sp|Q8WU10|PYRD1_HUMAN Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 OS=Homo sapiens GN=PYROXD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 414 bits (1063), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/479 (45%), Positives = 296/479 (61%), Gaps = 42/479 (8%)
Query: 16 SCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDA----NKFEGLCTV 71
+C E LA P E I LVT S ++KAVT ++K+L + VEE + +F + V
Sbjct: 24 TCAEQLATHFPSEDILLVTASPVIKAVTNFKQISKILEEFDVEEQSSTMLGKRFPNI-KV 82
Query: 72 IVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWY-SPHVITIRDTDSVAVLQE 130
I V + +C++TE N+ YK LC+C GA P+ I +P+V+ IRDTDS Q+
Sbjct: 83 IESGVKQLKSEEHCIVTEDGNQHVYKKLCLCAGAKPKLICEGNPYVLGIRDTDSAQEFQK 142
Query: 131 KLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNT 190
+L AK+I++IGNGGIA ELV+E+ +++W +KDK I TF D GAAEF +
Sbjct: 143 QLTKAKRIMIIGNGGIALELVYEIEGCEVIWAIKDKAIGNTFFDAGAAEFLTSKL-IAEK 201
Query: 191 AKPETIFKRMRYNTGGEK------------GPSLGPDWHTQVNLHGSSR-DTKITIEYSC 237
++ + KR RY T G K G +LGPDWH +NL G+ KI +E C
Sbjct: 202 SEAKIAHKRTRYTTEGRKKEARSKSKADNVGSALGPDWHEGLNLKGTKEFSHKIHLETMC 261
Query: 238 EVERI----------------------VDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275
EV++I V ++ + YV+LTN + CD +VSA GV P
Sbjct: 262 EVKKIYLQDEFRILKKKSFTFPRDHKSVTADTEMWPVYVELTNEKIYGCDFIVSATGVTP 321
Query: 276 NSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKH 335
N +HG F+L D G+ V++ M TS+ ++YAAGD+CT SW L+ W QMRLWTQA+
Sbjct: 322 NVEPFLHGNSFDLGEDGGLKVDDHMHTSLPDIYAAGDICTTSWQLSPVWQQMRLWTQARQ 381
Query: 336 MGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVT 395
MG YAAKCM A + + DFSFE+F H+TKFF YKV+LLG +N Q L +D+E++LR T
Sbjct: 382 MGWYAAKCMAAASSGDSIDMDFSFELFAHVTKFFNYKVVLLGKYNAQGLGSDHELMLRCT 441
Query: 396 RGEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDYFD 454
+G EYIK+VM++GRM GAVLIGET++EE ENLILNQ++L+ +DLL+PNIDI+DYFD
Sbjct: 442 KGREYIKVVMQNGRMMGAVLIGETDLEETFENLILNQMNLSSYGEDLLDPNIDIEDYFD 500
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: - |
| >sp|A7YVH9|PYRD1_BOVIN Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 OS=Bos taurus GN=PYROXD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/483 (45%), Positives = 299/483 (61%), Gaps = 48/483 (9%)
Query: 16 SCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDA----NKFEGLCTV 71
+C E LA P E I L+T S ++KAVT V+K+L + VEE + N+F + V
Sbjct: 24 TCAEQLAINFPSEDILLITASPVIKAVTNFKQVSKVLEEFDVEEQPSTMLENRFPNI-KV 82
Query: 72 IVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWY-SPHVITIRDTDSVAVLQE 130
I V + + +CV+TE N+ YK LC+C GA P+ I +P+V+ IRDTDS Q+
Sbjct: 83 IESGVKQLKSKEHCVLTEDGNQHIYKKLCLCAGAKPKLICEGNPYVLGIRDTDSAQEFQK 142
Query: 131 KLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNT 190
+L AK+I++IGNGGIA ELV+E+ +++WV+KDK I TF D GAAEF +K
Sbjct: 143 QLTKAKRIMIIGNGGIALELVYEIEGCEVIWVIKDKAIGNTFFDAGAAEFL---TSKLID 199
Query: 191 AKPETIF--KRMRYNTGGEK------------GPSLGPDWHTQVNLHGSSR-DTKITIEY 235
KPE KR RY T G K G +LGPDWH ++L G+ KI IE
Sbjct: 200 EKPEAKIAQKRTRYTTEGRKKETQARASAGNVGSALGPDWHEGLDLKGTKEFSHKIHIET 259
Query: 236 SCEVERI------------------------VDSEDDTCNAYVKLTNGHTHACDIVVSAI 271
CEV++I V ++ + YV+LTN + CD +VSA
Sbjct: 260 MCEVKKIYLQEEFRISEKKSLTFPRDHHDQSVTTDKEIWPVYVELTNEKIYGCDFIVSAT 319
Query: 272 GVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWT 331
GV PN+ + G F++ D G+ V++ M TS+ ++YAAGD+CT +W + W QMRLWT
Sbjct: 320 GVTPNTEPFLCGNNFDVGEDGGLKVDDHMHTSLPDIYAAGDICTAAWHPSPVWQQMRLWT 379
Query: 332 QAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEIL 391
QA+ MG YAAKCM A E + DFSFE+F H+TKFF YKV+LLG +N Q L +++E+L
Sbjct: 380 QARQMGWYAAKCMAAASVGESIDMDFSFELFAHVTKFFNYKVVLLGKYNAQGLGSNHELL 439
Query: 392 LRVTRGEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNIDIDD 451
LR T+G+EYIK V+++GRM GAVLIGET++EE ENLILNQ++L+ +DLL+PNIDI+D
Sbjct: 440 LRCTKGQEYIKAVLQNGRMMGAVLIGETDLEETFENLILNQMNLSAYGEDLLDPNIDIED 499
Query: 452 YFD 454
YFD
Sbjct: 500 YFD 502
|
Bos taurus (taxid: 9913) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: - |
| >sp|Q68FS6|PYRD1_RAT Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 OS=Rattus norvegicus GN=Pyroxd1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust.
Identities = 213/480 (44%), Positives = 288/480 (60%), Gaps = 43/480 (8%)
Query: 16 SCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDA----NKFEGLCTV 71
+C E LA P E I LVT S ++KAVT V+K+L + VEE + N+F + V
Sbjct: 21 TCAEQLAINFPAEDILLVTASPVIKAVTNFKQVSKVLEEFDVEEQPSTMLENRFPNI-KV 79
Query: 72 IVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWY-SPHVITIRDTDSVAVLQE 130
I V + +C+ TE YK LC+C GA P+ I +P+V+ IRDTDS Q+
Sbjct: 80 IESGVKQLKSDKHCIFTEDGREYVYKKLCLCAGAKPKLICEGNPYVLGIRDTDSAQEFQK 139
Query: 131 KLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNT 190
+L A++I+++GNGGIA EL +E+ +++W +KDK I TF D GAAEF + +
Sbjct: 140 QLTKARRIMIVGNGGIALELAYEVEVCEVIWAIKDKAIGNTFFDAGAAEFLTSRL-LSEK 198
Query: 191 AKPETIFKRMRYNTGGEK------------GPSLGPDWHTQVNLHGSSRDT-KITIEYSC 237
++ + KR Y K G +LGPDWH + L G+ + I IE C
Sbjct: 199 SEAKLAHKRTIYTVEEAKKETSTKSKADYVGSALGPDWHGGLALKGTEEFSHSIHIETKC 258
Query: 238 EVERIVDSED-----------------------DTCNAYVKLTNGHTHACDIVVSAIGVV 274
EV++I E+ + YV+LTNG + CD +VSA GV
Sbjct: 259 EVKKIYLQEEFKIMKKKSLAFPKDHHKSVTVDKEMWPVYVELTNGSIYGCDFLVSATGVT 318
Query: 275 PNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAK 334
PN +HG F+L D G+ V+E M+TS+ ++YAAGD+CT W + W QMRLWTQA+
Sbjct: 319 PNVQPFLHGNDFDLGEDGGLRVDEQMRTSLPDIYAAGDICTACWPPSPVWQQMRLWTQAR 378
Query: 335 HMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRV 394
MG YAAKCM A P+ DFSFE+F H+TKFF YKV+LLG +N Q L D+E++LR
Sbjct: 379 QMGCYAAKCMAAATMGHPIDMDFSFELFAHVTKFFNYKVVLLGKYNAQGLGVDHELMLRC 438
Query: 395 TRGEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDYFD 454
TRG+EYIK+VM +GRM GAVLIGET++EE ENLILNQ+DL+ +DLLNP+IDI+DYFD
Sbjct: 439 TRGQEYIKVVMHNGRMMGAVLIGETDLEETFENLILNQMDLSSYGEDLLNPDIDIEDYFD 498
|
Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: - |
| >sp|Q3TMV7|PYRD1_MOUSE Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 OS=Mus musculus GN=Pyroxd1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 397 bits (1020), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/478 (43%), Positives = 286/478 (59%), Gaps = 39/478 (8%)
Query: 16 SCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEGL---CTVI 72
+C E LA P E I LVT S ++KAVT V+K+L + VEE E VI
Sbjct: 21 TCAEQLAVSFPEEDILLVTASPVIKAVTNFRQVSKVLEEFDVEEQPGTMLESRFPNIKVI 80
Query: 73 VDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWY-SPHVITIRDTDSVAVLQEK 131
V + +C+ TE YK LC+C GA P+ I+ +P V+ IRDTDS Q++
Sbjct: 81 ESGVKQLKSEDHCIFTEDGREFVYKKLCLCAGAKPKLIYEGNPRVLGIRDTDSAQEFQKE 140
Query: 132 LKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSI----NK 187
L A++I+++GNGGIA EL +E+ ++VW +KD I TF D GAAEF + ++
Sbjct: 141 LAKARRIMIVGNGGIALELAYEIEGCEVVWAIKDNAIGNTFFDAGAAEFLTSKLMSEKSE 200
Query: 188 TNTAKPETIF------KRMRYNTGGEK-GPSLGPDWHTQVNLHGSSRDT-KITIEYSCEV 239
A TI+ K R + + G +LGPDWH + L G+ + + IE CEV
Sbjct: 201 AKIAHKRTIYTVEEAKKETRTKSKADYVGSALGPDWHGGLALKGTEEFSHSVHIETRCEV 260
Query: 240 ERI-----------------------VDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276
++I V ++ + YV+LTNG + CD +VSA GV PN
Sbjct: 261 KKIYLEEEFKIMKKKSLAFPKDHHKSVTADKEMWPVYVELTNGTIYGCDFLVSATGVTPN 320
Query: 277 SNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHM 336
+ +H F L D G+ V++ M+TS+ ++YAAGD+CT W + W QMRLWTQA+ M
Sbjct: 321 VHPFLHRNNFALGEDGGLRVDDQMRTSLPDIYAAGDICTACWQPSPVWQQMRLWTQARQM 380
Query: 337 GTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTR 396
G YAAKCM A P+ DFSFE+F H+TKFF YKV+LLG +N Q L D+E++LR TR
Sbjct: 381 GYYAAKCMAAASMGHPIDMDFSFELFAHVTKFFNYKVVLLGKYNAQGLGADHELMLRCTR 440
Query: 397 GEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDYFD 454
G+EY+K+VM++GRM GAVLIGET++EE ENLILNQ+DL+ +DLL+PNIDI+DYFD
Sbjct: 441 GQEYVKVVMQNGRMMGAVLIGETDLEETFENLILNQMDLSSYGEDLLDPNIDIEDYFD 498
|
Mus musculus (taxid: 10090) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: - |
| >sp|Q54H36|PYRD1_DICDI Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 OS=Dictyostelium discoideum GN=pyroxd1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 334 bits (856), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 195/541 (36%), Positives = 293/541 (54%), Gaps = 93/541 (17%)
Query: 6 LIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKF 65
++IGGGIAG++C E + L P + + +++ S I+K V ++K+L V ET
Sbjct: 7 IVIGGGIAGLTCAESYSHLKPNDKVTILSCSPILKTVCNVQKISKVLESFEVFETQFTDI 66
Query: 66 EGL---CTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSPHVITIRDT 122
E +VI+ V +ID V T+K N KY L IC+GA P + SP++I IRDT
Sbjct: 67 EFKNPNISVIICDVDSIDINNRIVKTDKGN-FKYDYLSICSGAKPNLVKESPYLIGIRDT 125
Query: 123 DSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFF- 181
+++ L+ +L +AK+IV++GNGGIA EL+HE+ N I+W +KDKHI F D AA+F
Sbjct: 126 ETIVDLKNRLSNAKRIVIVGNGGIALELIHEIKNCQIIWSIKDKHIGNAFFDKDAADFLF 185
Query: 182 -------QDSINKTNTAKP---------------ETIFKRMRYNT-------GGEKGPSL 212
D+ +K N K E I K ++ E G +L
Sbjct: 186 RSKQIIDDDNHDKKNVVKEQQQQQQKDGILLNEDELIAKNQNISSQSNSSLYKSESGSAL 245
Query: 213 GPDWHTQVNLHGSSRDTK------------ITIEYSCEVERIVDSEDDTCNA-------- 252
GP W+++ N + + K + I+YS ++ I + D N
Sbjct: 246 GPQWYSKYNFKTTDQYNKNNQEKKYNFNENVNIQYSTFLDEIYSNHDKKLNQEIINNNNN 305
Query: 253 -----------YVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTP-------FELAPDCGI 294
YVKL+NG+ C+ ++SA GV+PNS I +L+ + I
Sbjct: 306 GDGDDKEDWPIYVKLSNGNLFGCNFIISATGVIPNSTILTKDNNNNNNNKIIKLSNEGAI 365
Query: 295 GVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG-AVKNEP- 352
V+E M+TS+ +Y+AGDVC+ W ++ WFQMRLW+QA+ G Y A+C+ +VKN P
Sbjct: 366 IVDEQMKTSVDRIYSAGDVCSIEWSESEVWFQMRLWSQARTQGRYTAQCIANESVKNTPQ 425
Query: 353 ------VIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDY-------------EILLR 393
+ +F FE+F H TKFFG+KVI+LGL+N Q L + +I R
Sbjct: 426 QDNLDQICTNFEFELFAHATKFFGFKVIMLGLYNAQGLNLNLDNNNQNEENQDNIKIYTR 485
Query: 394 VTRGEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDYF 453
GE+Y+K+++K+GR+ G++LIG+T++EE ENLILNQ+DL+ ++LNP IDI+DYF
Sbjct: 486 EIIGEQYVKVILKNGRLIGSLLIGDTDLEETFENLILNQIDLSGYGAEILNPEIDIEDYF 545
Query: 454 D 454
D
Sbjct: 546 D 546
|
Dictyostelium discoideum (taxid: 44689) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: - |
| >sp|A0KEJ2|NORW_AERHH Nitric oxide reductase FlRd-NAD(+) reductase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=norW PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 103/239 (43%), Gaps = 47/239 (19%)
Query: 76 VAAIDPRVNCVITEKQNRIKYKTLCICTGASPRK--IWYSPHVITIRDTDSVAVLQEKLK 133
V IDP V+TE Q Y L + TGAS + + S H++T+ A ++ ++
Sbjct: 91 VLGIDPVRRLVLTE-QGEFPYGQLVLATGASAVRPELPGSEHLVTLNSQQEYAAVEGAIQ 149
Query: 134 SAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKP 193
A++I+V+G G I EL ++++ T LD DS + P
Sbjct: 150 QARRILVLGAGLIGCELAMDMAS---------DGREVTLLD------LADS--PLSALLP 192
Query: 194 ETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAY 253
T+ + L + R +++++ + RI D
Sbjct: 193 ATLTQ----------------------PLQQALRSQGVSLQFGTGLARIDGQPGDGWR-- 228
Query: 254 VKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGD 312
V LT+G T D+V++AIG+ PN + G LA + GI V + +QTS +++A GD
Sbjct: 229 VTLTDGRTSEQDLVIAAIGLRPNLAL-ARGA--GLAVERGILVGDRLQTSDPHIFALGD 284
|
One of at least two accessory proteins for anaerobic nitric oxide (NO) reductase. Reduces the rubredoxin moiety of NO reductase. Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) (taxid: 380703) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: - |
| >sp|P42435|NASD_BACSU Nitrite reductase [NAD(P)H] OS=Bacillus subtilis (strain 168) GN=nasD PE=2 SV=1 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 101/454 (22%), Positives = 180/454 (39%), Gaps = 76/454 (16%)
Query: 6 LIIGGGIAGVSCVEGLAFLHPGE---SIGLVTPSGIVKAV--TKTVPVTKLLSDITVEET 60
+++G G+AGV +E + + E +I P + +K + + DIT+ +
Sbjct: 7 VLVGNGMAGVRAIEEILSVAKDEFQITIFGAEPHPNYNRILLSKVLQGDTDIKDITLNDW 66
Query: 61 DANKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWY----SPHV 116
D + + +TV +D VIT+ Y L + TG+ P + V
Sbjct: 67 DWYEENNIQLYTNETVIKVDTENKTVITDADRIQPYDELILATGSVPFILPIPGADKKGV 126
Query: 117 ITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNV--DIVWVVKDKHISATFLD 174
RD + K KK VIG G + E L N+ D+ + + LD
Sbjct: 127 TAFRDIKDTDTMLAASKQYKKAAVIGGGLLGLEAARGLLNLGMDVSVIHLAPFLMERQLD 186
Query: 175 PGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIE 234
A Q+ + K +T
Sbjct: 187 ATAGRLLQNELEKQG-----------------------------------------MTFL 205
Query: 235 YSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGI 294
+ E IV DD ++ +G + D+VV A+G+ PN+ + G + + GI
Sbjct: 206 LEKQTEEIVG--DDRVEG-LRFKDGTSIEADLVVMAVGIRPNTTL---GAESGIPVNRGI 259
Query: 295 GVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVI 354
VN+ MQT I ++YA G+ C +A L+ QAK + AK M G ++ +P
Sbjct: 260 IVNDYMQTEIPHIYAVGE-CAEHRGIA-YGLVAPLYEQAKVL----AKHMCG-IETKP-- 310
Query: 355 QDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEE--YIKLVMKDGRMQG 412
+ + + K G +V G FN E++ + ++V ++ Y K+V++ ++ G
Sbjct: 311 --YEGSVLSTQLKVSGVEVFSAGDFN----ESEEKKAIKVFDEQDGIYKKIVLRGNQIVG 364
Query: 413 AVLIGETEIEEMCENLILNQLDLTDIAD-DLLNP 445
AVL G++ ++I + D+++ + +L P
Sbjct: 365 AVLFGDSSEGNRLFSMIQKEADISETSKISILQP 398
|
Required for nitrite assimilation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 1 EC: . EC: 7 EC: . EC: 1 EC: . EC: 4 |
| >sp|Q5JGP4|CDR_PYRKO Coenzyme A disulfide reductase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1299 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 89/404 (22%), Positives = 159/404 (39%), Gaps = 73/404 (18%)
Query: 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLV--------TPSGIVKAVTKTVPVTKLL--- 52
T ++IGGG AG+S + L P + + P GI V P KL+
Sbjct: 5 TVVVIGGGAAGMSTASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGISPKEKLMHYP 64
Query: 53 SDITVEETDANKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWY 112
++ +++ + + + + RV + + ++ L GASP+
Sbjct: 65 PEVFIKKRGID-----LHLKAEVIEVEQGRVRVREEDGEKTYEWDYLVFANGASPQVPAI 119
Query: 113 S----PHVITIR-DTDSVAVLQEKLKSA-KKIVVIGNGGIATELVHELSNVDIVWVVKDK 166
P V T D+VA+ + K+ + +VVIG G IA E+ +V + K
Sbjct: 120 EGIDLPGVFTADLPPDAVAITEYLEKNPVENVVVIGTGYIAIEMAE-------AFVERGK 172
Query: 167 HISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSS 226
+++ L + + + +K T + + +++R H + L
Sbjct: 173 NVT---LIGRSERVLRKTFDKEIT---DIVEEKLRN--------------HLNLRLE--- 209
Query: 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPF 286
+ + IE VER+V T+ + D+V+ A G+ PN+ + G
Sbjct: 210 -EVTLRIEGKERVERVV-------------TDAGEYPADLVIVATGIKPNTEL-ARGLGV 254
Query: 287 ELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346
+ I N+ MQTS+ NVYAAGDV + + M L MG A + G
Sbjct: 255 RIGETGAIWTNDRMQTSVENVYAAGDVAETKHLITGRRVWMPLAPAGNKMGYVAGSNIAG 314
Query: 347 AVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEI 390
+ P + + T +TKF ++ GL + ++ Y++
Sbjct: 315 KEIHFPGV------LGTSITKFLDLEIGKTGLTEAEAMKEGYDV 352
|
Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 1 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 454 | ||||||
| 307212291 | 473 | Pyridine nucleotide-disulfide oxidoreduc | 0.997 | 0.957 | 0.531 | 1e-137 | |
| 380015320 | 477 | PREDICTED: pyridine nucleotide-disulfide | 0.991 | 0.943 | 0.521 | 1e-136 | |
| 322798339 | 497 | hypothetical protein SINV_15644 [Solenop | 0.995 | 0.909 | 0.528 | 1e-135 | |
| 350410594 | 477 | PREDICTED: pyridine nucleotide-disulfide | 0.991 | 0.943 | 0.519 | 1e-134 | |
| 340719568 | 477 | PREDICTED: pyridine nucleotide-disulfide | 0.991 | 0.943 | 0.519 | 1e-134 | |
| 307185023 | 482 | Pyridine nucleotide-disulfide oxidoreduc | 0.997 | 0.939 | 0.521 | 1e-133 | |
| 383863131 | 477 | PREDICTED: pyridine nucleotide-disulfide | 0.984 | 0.937 | 0.522 | 1e-132 | |
| 332019172 | 476 | Pyridine nucleotide-disulfide oxidoreduc | 0.997 | 0.951 | 0.504 | 1e-129 | |
| 242011258 | 471 | conserved hypothetical protein [Pediculu | 0.995 | 0.959 | 0.492 | 1e-129 | |
| 110456566 | 217 | unknown [Diaphorina citri] | 0.477 | 1.0 | 1.0 | 1e-125 |
| >gi|307212291|gb|EFN88099.1| Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 252/474 (53%), Positives = 336/474 (70%), Gaps = 21/474 (4%)
Query: 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEET 60
ME T+ ++GGGIAGVSC EGL+FL+P ESI L+T S +VKAV VP+ K L +EE
Sbjct: 1 MECTFAVVGGGIAGVSCAEGLSFLYPEESIILITASPLVKAVMNIVPLGKTLMHFDIEEK 60
Query: 61 DANKF---EGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSPH-V 116
A + VI DTV ID + T + I +K LC+CTGASP+ I + + V
Sbjct: 61 SAVTLGDKHKMLQVIQDTVIKIDTIKKLIETRNKKIINFKMLCLCTGASPKLIAENNNFV 120
Query: 117 ITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPG 176
I IRDT+SV +KLK+AK++++IGNGGIATE+VHE+ +V+I+WV+KDKHISATF+DPG
Sbjct: 121 IGIRDTESVVQFSQKLKNAKRVIIIGNGGIATEIVHEVKDVEIIWVIKDKHISATFVDPG 180
Query: 177 AAEFFQDSINKTNTAK---PETIFKRMRY----NTGGEKGPSLGPDWHTQVNLHGS-SRD 228
AAEFF + I+K+NT++ + KRMRY +T + G +LGPDWH+ ++ G+
Sbjct: 181 AAEFFLNKISKSNTSENLTKDVPTKRMRYVISDSTPIKNGAALGPDWHSSFDMSGTLVES 240
Query: 229 TKITIEYSCEVERI--------VDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQ 280
T I +EY CEV R+ + S + YV+LTNG CD+++SA GV+PNS+I
Sbjct: 241 TNIQVEYECEVSRLFTPDEQKLLGSSMEEWPIYVQLTNGKIIGCDLIISATGVIPNSDI- 299
Query: 281 VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYA 340
E D G+ V+ ++TS ++YAAGDVCT +W AK WFQMRLWTQA MG YA
Sbjct: 300 CGLENLERGEDAGLLVDWKLETSQKDIYAAGDVCTANWPRAKHWFQMRLWTQAHQMGRYA 359
Query: 341 AKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEY 400
AK MV +K+E +QDF FE+FTH+TKFF YKV+LLGL+NGQTL +YEILLR+T+ +EY
Sbjct: 360 AKSMVSRLKHEDFLQDFCFELFTHVTKFFNYKVVLLGLYNGQTLGKNYEILLRITKDQEY 419
Query: 401 IKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDYFD 454
IK++++DG+MQGAVLIGET++EEMCENLILNQLDL+ ++LLNP+IDI+DYFD
Sbjct: 420 IKIILQDGKMQGAVLIGETDLEEMCENLILNQLDLSMYGEELLNPDIDIEDYFD 473
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380015320|ref|XP_003691652.1| PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 245/470 (52%), Positives = 330/470 (70%), Gaps = 20/470 (4%)
Query: 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDAN 63
T+LI+GGGIAGVSCVE +AFL P E I L+T S ++K VT +P+ K L +EE D
Sbjct: 9 TFLIVGGGIAGVSCVESIAFLVPEEKIILITASPLIKTVTNVIPLGKTLMQFDIEEKDTT 68
Query: 64 ---KFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIW-YSPHVITI 119
K L +I D V ID V T+ I YK LC+C GA P+ I ++ ++ I
Sbjct: 69 VLMKVHNLLKIINDLVIKIDSLNKQVETKSGKIINYKMLCLCNGARPKLIENHNNFILGI 128
Query: 120 RDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAE 179
RDT+SV +K+K++K+IV++GNGGIATE+VHE+ ++++WV+KDKHISATF+DPGAAE
Sbjct: 129 RDTESVFQFSQKIKNSKRIVIVGNGGIATEIVHEVHGLEMIWVIKDKHISATFVDPGAAE 188
Query: 180 FFQDSINKTNT---AKPETIFKRMRYN----TGGEKGPSLGPDWHTQVNLHGSS-RDTKI 231
FF + I K +T A ++ KRMRY T GP+LGPDWH ++ + + K+
Sbjct: 189 FFMNKIYKNDTFVNANVSSLTKRMRYTVSDITAVADGPALGPDWHNNFDIKSTYLKSAKV 248
Query: 232 TIEYSCEVERIVDSED-------DTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGT 284
IEY CE+ +I++ + + + YV+LTNG CD +VSA GV+PNS+I +
Sbjct: 249 QIEYECEIIKILNKSEQKEFDPMEKWSIYVQLTNGKIIGCDFIVSATGVIPNSDI-IGLE 307
Query: 285 PFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCM 344
+ D G+ V+ ++TS +++AAGDVC+ W+LAK WFQMRLWTQA MG YAAK M
Sbjct: 308 DIKKEKDGGLLVDWKLETSKQDIFAAGDVCSAGWELAKHWFQMRLWTQAHQMGRYAAKSM 367
Query: 345 VGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIKLV 404
V +KNE +QDF FE+FTH+TKFFGYKV+LLGL+NGQ L+N+YE+LLR+TRGEEYIKL+
Sbjct: 368 VSKMKNEEFLQDFCFELFTHVTKFFGYKVVLLGLYNGQKLDNNYEVLLRMTRGEEYIKLI 427
Query: 405 MKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDYFD 454
+K+G+MQGA+LIG+T +EEMCENLILNQLDL+ +DLLNP IDI+DYFD
Sbjct: 428 LKNGKMQGAILIGDTNLEEMCENLILNQLDLSIYGEDLLNPAIDIEDYFD 477
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322798339|gb|EFZ20079.1| hypothetical protein SINV_15644 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 251/475 (52%), Positives = 328/475 (69%), Gaps = 23/475 (4%)
Query: 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEET 60
ME T++IIGGGIAGVSC EGL+FL P ESI L+T S +VKAVT VP+ + L VEE
Sbjct: 25 MESTFVIIGGGIAGVSCAEGLSFLAPEESIILITASPLVKAVTNVVPLGRTLMHFDVEEK 84
Query: 61 DA----NKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS-PH 115
+A K+E L VI DT IDP V T I YK LC+CTGA P+ + +
Sbjct: 85 NAAVLSEKYETL-QVIHDTAVKIDPTEKLVETSSGKVISYKILCLCTGAKPKLLAENNDF 143
Query: 116 VITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDP 175
VI IRDT+SV KLK A++++++GNGGIATE+VHE+ V+++WV+KDKHISATF+DP
Sbjct: 144 VIGIRDTESVLQFSHKLKDARRVMIVGNGGIATEIVHEVKGVEMIWVIKDKHISATFVDP 203
Query: 176 GAAEFFQDSINK----TNTAKPETIFKRMRY----NTGGEKGPSLGPDWHTQVNLHGSS- 226
GAAEFF D I+ + + KRMRY +T E G +LGPDWH ++ G+
Sbjct: 204 GAAEFFLDKISSKSDVSENLDKNSPTKRMRYVVSDSTPIENGAALGPDWHNSFDMSGTHF 263
Query: 227 RDTKITIEYSCEVERIVDSEDDT---CNA----YVKLTNGHTHACDIVVSAIGVVPNSNI 279
T + +EY CE+ +++ S++ C Y +LTNG CD+++SA GV PNS+I
Sbjct: 264 TPTNVQVEYQCEILKLLTSDERKQFDCTEEWPIYAQLTNGKIIGCDLIISATGVTPNSDI 323
Query: 280 QVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTY 339
E D G+ V+ ++TS +VYAAGDVCT W AK WFQMRLWTQA MG Y
Sbjct: 324 -CGLEDLERGEDTGLLVDWKLETSKKDVYAAGDVCTVGWSKAKHWFQMRLWTQAHQMGRY 382
Query: 340 AAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEE 399
AAK M+ +++E +QDF FE+FTH+TKFF YKV+LLGL+NGQTL +YEILLR+T+ +E
Sbjct: 383 AAKSMISNLRSEEFLQDFCFELFTHVTKFFSYKVVLLGLYNGQTLGKNYEILLRITKDQE 442
Query: 400 YIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDYFD 454
Y+K++++DG+MQGAVLIGET++EEMCENLILNQLDL+ +DLLNPNIDI+DYFD
Sbjct: 443 YVKIILQDGKMQGAVLIGETDLEEMCENLILNQLDLSMYGEDLLNPNIDIEDYFD 497
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350410594|ref|XP_003489085.1| PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 244/470 (51%), Positives = 329/470 (70%), Gaps = 20/470 (4%)
Query: 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDAN 63
T+ I+GGGIAGVSC + +AFL P E I L+T S ++KAVT VP++K L +EE DA
Sbjct: 9 TFAIVGGGIAGVSCAKSIAFLVPEEKIILITASPLIKAVTNIVPLSKTLMQFDIEEKDAA 68
Query: 64 ---KFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIW-YSPHVITI 119
+ +I D V ID V T I YK LC+C GA P+ I ++ ++ I
Sbjct: 69 VLMEAHDSLKIINDFVIQIDSLNKQVQTRNGRIINYKMLCLCNGARPKLIEEHNNFILGI 128
Query: 120 RDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAE 179
RDT+SV +K+K++++IV++GNGGIATELV+E+ V+++WV+KDKHISATF+DPGAAE
Sbjct: 129 RDTESVLQFSQKIKNSRRIVIVGNGGIATELVNEVDGVEMIWVIKDKHISATFVDPGAAE 188
Query: 180 FFQDSINKTN---TAKPETIFKRMRYNTGGEK----GPSLGPDWHTQVNLHGSS-RDTKI 231
FF D + KT+ ++ KRMRY GP+LGPDWH ++ G+ + K+
Sbjct: 189 FFMDKVYKTDPCTNTNASSLTKRMRYTVSNTSVVTGGPALGPDWHNNFDVKGTFLKSAKV 248
Query: 232 TIEYSCEVERIVDSED-------DTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGT 284
IEY CE+ +I+ + + + YV+LTNG CD VVSA GV+PNS+I V
Sbjct: 249 QIEYECEIIKILSKSEQKEVDPMEEWSIYVELTNGKIIGCDFVVSATGVIPNSDI-VGLE 307
Query: 285 PFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCM 344
+ + D G+ V+ ++TS ++YAAGDVC+ W+LAK WFQMRLWTQA MG YAAK M
Sbjct: 308 DIKKSEDGGLLVDWKLETSKQDIYAAGDVCSAGWELAKHWFQMRLWTQAHQMGRYAAKSM 367
Query: 345 VGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIKLV 404
V +KNE +QDF FE+FTH+TKFFGYKV+LLGL+NGQ L+N+YEILLR+T+G EYIKL+
Sbjct: 368 VSKLKNEEFLQDFCFELFTHVTKFFGYKVVLLGLYNGQKLDNNYEILLRMTQGTEYIKLI 427
Query: 405 MKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDYFD 454
+++G+MQGAVLIG+T++EEMCENLILNQLDL+ +DLLNP+IDI+DYFD
Sbjct: 428 LENGKMQGAVLIGDTDLEEMCENLILNQLDLSIYGEDLLNPDIDIEDYFD 477
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340719568|ref|XP_003398222.1| PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 244/470 (51%), Positives = 328/470 (69%), Gaps = 20/470 (4%)
Query: 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDAN 63
T+ I+GGGIAGVSC + +AFL P E I L+T S ++KAVT VP++K L +EE D
Sbjct: 9 TFAIVGGGIAGVSCAKSIAFLVPEEKIILITASPLIKAVTNIVPLSKTLMQFDIEEKDTA 68
Query: 64 ---KFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIW-YSPHVITI 119
+ VI D V ID V T I YK LC+C GA P+ I ++ ++ I
Sbjct: 69 VLMEAHDSLKVINDFVIQIDSLNKQVQTRNGRIINYKMLCLCNGARPKLIEEHNNFILGI 128
Query: 120 RDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAE 179
RDT+SV +K+K++++IV++GNGGIATELV+E+ V+++WV+KDKHISATF+DPGAAE
Sbjct: 129 RDTESVLQFSQKIKNSRRIVIVGNGGIATELVNEVDGVEMIWVIKDKHISATFVDPGAAE 188
Query: 180 FFQDSINKTN---TAKPETIFKRMRYNTGGEK----GPSLGPDWHTQVNLHGSS-RDTKI 231
FF D + KT+ + KRMRY GP+LGPDWH ++ G+ + K+
Sbjct: 189 FFMDKVYKTDPYTNTNASSFTKRMRYTVTNTSVVTGGPALGPDWHNNFDVKGAFLKSAKV 248
Query: 232 TIEYSCEVERIVDSED-------DTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGT 284
IEY CE+ +I++ + + + YV+LTNG CD VVSA GV+PNS+I V
Sbjct: 249 QIEYECEIIKILNKSEQKEVDPMEEWSIYVELTNGKVIGCDFVVSATGVIPNSDI-VGLE 307
Query: 285 PFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCM 344
+ + D G+ V+ ++TS ++YAAGDVC+ W+LAK WFQMRLWTQA MG YAAK M
Sbjct: 308 DIKKSEDGGLLVDWKLETSKQDIYAAGDVCSAGWELAKHWFQMRLWTQAHQMGRYAAKSM 367
Query: 345 VGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIKLV 404
V +KNE +QDF FE+FTH+TKFFGYKV+LLGL+NGQ L+N+YEILLR+T+G EYIKL+
Sbjct: 368 VSKLKNEEFLQDFCFELFTHVTKFFGYKVVLLGLYNGQKLDNNYEILLRMTKGTEYIKLI 427
Query: 405 MKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDYFD 454
+++G+MQGAVLIG+T++EEMCENLILNQLDL+ +DLLNP+IDI+DYFD
Sbjct: 428 LENGKMQGAVLIGDTDLEEMCENLILNQLDLSIYGEDLLNPDIDIEDYFD 477
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307185023|gb|EFN71252.1| Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 246/472 (52%), Positives = 332/472 (70%), Gaps = 19/472 (4%)
Query: 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEET 60
+E T++I+GGGIAGVSC EGL+FL P E+I L+T S ++KAVT +P+ K L VEE
Sbjct: 12 IESTFVIVGGGIAGVSCAEGLSFLAPEENIILITASPLIKAVTNIIPLGKTLMHFDVEEK 71
Query: 61 DA---NKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSPHVI 117
A +K + VI DTV ID V I +K LC+CTGA P+ I + +I
Sbjct: 72 SATTLDKKYKMLQVIHDTVIKIDTIGKLVEISNGEIISFKILCLCTGAKPKLIAENNDLI 131
Query: 118 T-IRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPG 176
IRDT+SV +KLK+AK+I+++GNGGIATE+V+E+ V+I+WV+KDKHISATF+DPG
Sbjct: 132 VGIRDTESVLQFSQKLKNAKRIIIVGNGGIATEIVYEIKGVEIIWVIKDKHISATFVDPG 191
Query: 177 AAEFFQDSI-NKTNTAKPETI-FKRMRY----NTGGEKGPSLGPDWHTQVNLHGSSRDTK 230
AAEFF + I +K++T+ + + KRMRY T + G +LGPDWH ++ G+ +K
Sbjct: 192 AAEFFLNKIYSKSDTSDNKNMPSKRMRYVVSDTTSVKNGAALGPDWHNSFDISGTCFTSK 251
Query: 231 -ITIEYSCEVERIVDSED-------DTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVH 282
+ +EY CE+ +++ S++ + Y +LTNG CD+++SA GV+PNS+I
Sbjct: 252 NVHVEYECEISKLLTSDEQKHLNSTEKWPIYAQLTNGKIIGCDLIISATGVIPNSDI-CG 310
Query: 283 GTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAK 342
+ D G+ V+ ++TS N+YAAGDVCT W AK WFQMRLWTQA MG YAAK
Sbjct: 311 LENLKKGEDTGLLVDWKLETSEKNIYAAGDVCTADWSKAKHWFQMRLWTQAHQMGRYAAK 370
Query: 343 CMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIK 402
MV ++NE +QDF FE+FTH+TKFF YKVILLGL+NGQTL +YEILLR T+ +EY+K
Sbjct: 371 SMVSNLRNEEFLQDFCFELFTHVTKFFTYKVILLGLYNGQTLGKNYEILLRTTKDQEYVK 430
Query: 403 LVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDYFD 454
++++DG+MQGAVLIGET++EEMCENLILNQLDL+ +DLLNPNIDI+DYFD
Sbjct: 431 IILQDGKMQGAVLIGETDLEEMCENLILNQLDLSMYGEDLLNPNIDIEDYFD 482
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383863131|ref|XP_003707036.1| PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 247/473 (52%), Positives = 328/473 (69%), Gaps = 26/473 (5%)
Query: 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDAN 63
T+ I+GGGIAGVSCVE + FL P ES L+T S ++KAVT +P+ K L VEE D
Sbjct: 9 TFAIVGGGIAGVSCVESIGFLAPEESTVLITASPLIKAVTNIIPLGKTLMQFNVEEKDIE 68
Query: 64 KF---EGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWY-SPHVITI 119
VI D V ++ + T+ I YK LC+C GA P+ + + V+ I
Sbjct: 69 TLTNTRNSLIVIHDFVEKVNTTNKQLETKNGRIIHYKMLCLCNGARPKLVAECNNFVLGI 128
Query: 120 RDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAE 179
RDT+SV +K+KS++KIV+IGNGGIATE++HE+ +++VWV+KDKHISATF+DPGAAE
Sbjct: 129 RDTESVVQFSQKIKSSRKIVIIGNGGIATEIIHEVDGIEMVWVIKDKHISATFIDPGAAE 188
Query: 180 FFQDSINKTNTAKPETIF---KRMRYN----TGGEKGPSLGPDWHTQVNLHGSS-RDTKI 231
FF D + +TNT+ KRMRY T + GP+LGPDWH ++ G+ + +K+
Sbjct: 189 FFVDKVYRTNTSTNVNTNTVTKRMRYTISDPTAVKAGPALGPDWHNNFDIKGTYLKASKV 248
Query: 232 TIEYSCEVERIVDSED-------DTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGT 284
IEY CE+ +I++ + YV+LTNG CD +VSA GV+PN+NI T
Sbjct: 249 QIEYECEMIKILNESEKKEFDPMQEWPVYVELTNGKIIGCDFIVSATGVIPNTNI----T 304
Query: 285 PFE---LAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAA 341
E D G+ V+ ++TS +VYAAGDVC+ W++AK WFQMRLWTQA MG YAA
Sbjct: 305 GLEDITKGEDGGLLVDWKLETSKQDVYAAGDVCSAGWEIAKHWFQMRLWTQAHQMGRYAA 364
Query: 342 KCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYI 401
K MV ++NE +QDF FE+FTH+TKFFGYKV+LLGLFNGQ L+N YEILLR+T+G+EYI
Sbjct: 365 KSMVSKLRNEEFLQDFCFELFTHVTKFFGYKVVLLGLFNGQKLDNKYEILLRMTKGQEYI 424
Query: 402 KLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDYFD 454
KL++++G+MQGAVLIG+T++EEMCENLILNQLDL+D +DLLNP+IDI+DYFD
Sbjct: 425 KLILENGKMQGAVLIGDTDLEEMCENLILNQLDLSDYGEDLLNPDIDIEDYFD 477
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332019172|gb|EGI59682.1| Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 239/474 (50%), Positives = 320/474 (67%), Gaps = 21/474 (4%)
Query: 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEET 60
+E T++IIGGGIAGVSC EGL+FL P SI L+T S ++KAVT +P+ + L VEE
Sbjct: 4 IESTFVIIGGGIAGVSCAEGLSFLAPDASIILITASPLIKAVTNIIPLGRTLMHFDVEEK 63
Query: 61 DA---NKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS-PHV 116
A ++ + VI DT ID + I +K LC+CTGA P+ I + V
Sbjct: 64 SATVLSEKHKMLRVIHDTAVKIDIIKKQIEIGSGKIISFKMLCLCTGAKPKLIAENNDFV 123
Query: 117 ITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPG 176
I IRDT+SV KL+ A++++++GNGGIATE+VHE+ VD++WV+KDKHISATF+DPG
Sbjct: 124 IGIRDTESVLQFSHKLRDARRVIIVGNGGIATEIVHEVKGVDMIWVIKDKHISATFVDPG 183
Query: 177 AAEFFQDSINK----TNTAKPETIFKRMRY----NTGGEKGPSLGPDWHTQVNLHGSS-R 227
AAEFF D I+ + + KRMRY NT + G +LGPDWH ++ G+
Sbjct: 184 AAEFFLDKISSKSDVSGNLNKDLPTKRMRYVVSDNTPVKNGAALGPDWHNSFDMSGTHFT 243
Query: 228 DTKITIEYSCEVERIVDSED-------DTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQ 280
T + +EY CE+ ++ ++ + Y +LTNG CD+++SA GV NSNI
Sbjct: 244 PTNVQVEYECEISKLFTLDERKQFDSTEEWPIYAQLTNGKIIGCDLIISATGVTSNSNI- 302
Query: 281 VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYA 340
E D G+ V+ ++TS ++YAAGDVCT W AK WFQMRLWTQA MG YA
Sbjct: 303 CGLEELEKGEDSGLLVDWKLETSKQDIYAAGDVCTVGWPKAKHWFQMRLWTQAHQMGRYA 362
Query: 341 AKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEY 400
AK MV ++NE +QDF FE+FTH+TKFF YKV+LLGL+NGQTL +YEILLR+T+ +EY
Sbjct: 363 AKSMVSNLRNEDFLQDFCFELFTHVTKFFSYKVVLLGLYNGQTLGKNYEILLRITKDQEY 422
Query: 401 IKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDYFD 454
+K++++DG+MQGAVLIGET++EEMCENLILNQLDL+ +DLLNP+IDI+DYFD
Sbjct: 423 VKIILQDGKMQGAVLIGETDLEEMCENLILNQLDLSMYGEDLLNPDIDIEDYFD 476
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242011258|ref|XP_002426372.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212510449|gb|EEB13634.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 232/471 (49%), Positives = 327/471 (69%), Gaps = 19/471 (4%)
Query: 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEET 60
++T++++GGGIAGV+C E LA L+ I L+T S I+K V+ V +TK + ++ VEET
Sbjct: 3 FDYTFVVLGGGIAGVTCAETLAQLNRESDILLITRSEIIKTVSSAVYLTKTIMELDVEET 62
Query: 61 DANKFEGL---CTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWY-SPHV 116
++K + D V ++ + TE + +I +K LCICTG P I +P+V
Sbjct: 63 TSSKISDKYPNVKFLTDNVTKLNYDDRIIETENKLKISFKKLCICTGGEPNLIKMCNPYV 122
Query: 117 ITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPG 176
I IRDT+SV + K+K++K+I+V+GNGGIA+E+++E+ ++ +WV+KD +I+ F+DPG
Sbjct: 123 IGIRDTESVKDFESKIKNSKRIMVVGNGGIASEVIYEVEGIEKIWVIKDNYITKNFIDPG 182
Query: 177 AAEFFQDSINKTNTAKPETIFKRMRYNTG------------GEKGPSLGPDWHTQVNLHG 224
AAEFFQ+ ++K +I KR+ Y T +K P+LGPDWH + +L G
Sbjct: 183 AAEFFQNKLDK-KCGDVSSIIKRVVYTTTTTTSPNSSDANLKKKNPALGPDWHKRYDLKG 241
Query: 225 SSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGT 284
S ++ + IEY+ VE I+ + D+ YV+LTNG + D VVSA GVVPNS I V
Sbjct: 242 SLKENSVAIEYNTRVENII-TGDENYPVYVELTNGKRYGVDFVVSATGVVPNSEIFVRDN 300
Query: 285 P-FELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKC 343
+++ D GI V+ M+T++ +V+AAGDVC+ W A+ W QMRLWTQA+ MG Y AKC
Sbjct: 301 KDLKISEDGGIIVDWKMETTLKDVFAAGDVCSAGWTWAQHWHQMRLWTQAQQMGCYGAKC 360
Query: 344 MVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIKL 403
M +V NE + QDF FE+F+H+TK +GYKVILLGL+NGQ LENDYE+LLRVTR +EY+K+
Sbjct: 361 MTASVNNEEIYQDFCFEIFSHVTKLYGYKVILLGLYNGQKLENDYEVLLRVTRDKEYVKI 420
Query: 404 VMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDYFD 454
V+K+G+MQGA+LIG+T++EEMCENLILNQLDLT DDLLNP+IDIDDYFD
Sbjct: 421 VLKNGKMQGALLIGDTDLEEMCENLILNQLDLTQYGDDLLNPDIDIDDYFD 471
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|110456566|gb|ABG74725.1| unknown [Diaphorina citri] | Back alignment and taxonomy information |
|---|
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/217 (100%), Positives = 217/217 (100%)
Query: 238 EVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVN 297
EVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVN
Sbjct: 1 EVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVN 60
Query: 298 ELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDF 357
ELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDF
Sbjct: 61 ELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDF 120
Query: 358 SFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIKLVMKDGRMQGAVLIG 417
SFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIKLVMKDGRMQGAVLIG
Sbjct: 121 SFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIKLVMKDGRMQGAVLIG 180
Query: 418 ETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDYFD 454
ETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDYFD
Sbjct: 181 ETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDYFD 217
|
Source: Diaphorina citri Species: Diaphorina citri Genus: Diaphorina Family: Psyllidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 454 | ||||||
| ZFIN|ZDB-GENE-040426-1732 | 490 | ryroxd1 "pyridine nucleotide-d | 0.552 | 0.512 | 0.490 | 1.3e-107 | |
| FB|FBgn0032846 | 472 | CG10721 [Drosophila melanogast | 0.984 | 0.947 | 0.456 | 1.8e-101 | |
| UNIPROTKB|Q8WU10 | 500 | PYROXD1 "Pyridine nucleotide-d | 0.466 | 0.424 | 0.514 | 3.6e-101 | |
| UNIPROTKB|A7YVH9 | 502 | PYROXD1 "Pyridine nucleotide-d | 0.473 | 0.428 | 0.488 | 1.1e-99 | |
| RGD|1303253 | 498 | Pyroxd1 "pyridine nucleotide-d | 0.495 | 0.451 | 0.502 | 2e-98 | |
| MGI|MGI:2676395 | 498 | Pyroxd1 "pyridine nucleotide-d | 0.495 | 0.451 | 0.488 | 4.7e-97 | |
| UNIPROTKB|F1NPI8 | 501 | PYROXD1 "Uncharacterized prote | 0.444 | 0.403 | 0.519 | 8.8e-96 | |
| UNIPROTKB|B3KWN8 | 429 | PYROXD1 "cDNA FLJ43472 fis, cl | 0.466 | 0.494 | 0.514 | 4.3e-92 | |
| UNIPROTKB|F1SQZ8 | 487 | PYROXD1 "Uncharacterized prote | 0.466 | 0.435 | 0.504 | 3.4e-90 | |
| UNIPROTKB|J9PBH9 | 430 | PYROXD1 "Uncharacterized prote | 0.427 | 0.451 | 0.546 | 5.6e-90 |
| ZFIN|ZDB-GENE-040426-1732 ryroxd1 "pyridine nucleotide-disulphide oxidoreductase domain 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 648 (233.2 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 130/265 (49%), Positives = 176/265 (66%)
Query: 204 TGGEKGPSLGPDWHTQVNLHGSSRDTK-ITIEYSCEVERI------VDSEDDTCNA---- 252
+ E G +LGPDWH + L G+ + + + IEY CEVE+I + SE T A
Sbjct: 226 SSSELGSALGPDWHEGIELRGAKQSVRGVHIEYECEVEQIYTQQELLQSEHGTKTAELGV 285
Query: 253 ---YVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYA 309
YV+LTNG + CD +VSA GVVPN++ + G F++A D G+ V++ M+TS ++V+A
Sbjct: 286 WPAYVQLTNGKIYGCDFIVSATGVVPNTDPFLPGNNFDVAADLGLLVDDHMRTSEADVFA 345
Query: 310 AGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFF 369
AGDVC+ W+ + W QMRLWTQA+ MG YAA+CM V +EP+ DF FE+F+H+TKFF
Sbjct: 346 AGDVCSAGWEPSSIWQQMRLWTQARQMGWYAARCMAADVLDEPIELDFCFELFSHITKFF 405
Query: 370 GYKVILLGLFNGQTLENDYEILLRVTRGEEYIKLVMKDGRMQGAVLIGETEIEEMCENLI 429
YKV+LLG FN Q L D+E+L+R T+G+EY+K+V+ GRM GAVLIGET++EE ENLI
Sbjct: 406 NYKVVLLGKFNAQGLGQDHELLVRCTKGQEYVKVVLSGGRMVGAVLIGETDLEETFENLI 465
Query: 430 LNQLDLTXXXXXXXXXXXXXXXYFD 454
LNQ+DLT YFD
Sbjct: 466 LNQMDLTRYGEELLNPNIDIEDYFD 490
|
|
| FB|FBgn0032846 CG10721 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
Identities = 214/469 (45%), Positives = 290/469 (61%)
Query: 5 YLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIXXXXXXXXXXXXLLSDITVEETDANK 64
+L++GGGIAGVSC E LA P SI L+T S I L V E D ++
Sbjct: 7 FLVVGGGIAGVSCAESLAIYRPNASILLLTESSIVKSVTNLVPVARYLHKFDVREQDVSE 66
Query: 65 FEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPR----KIWYSPHVITIR 120
+VD + I+ R +C+ T+ IKY+ LC+CTG +P+ K+ +P VI IR
Sbjct: 67 MGASFQTLVDRLDHINSREHCIRTKAGLEIKYRYLCLCTGGTPKLFSGKV-VNPLVIGIR 125
Query: 121 DTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEF 180
DTDSV +LQ KL +AK ++++GNGGIA+EL +EL +V++ WVVKD HISATF+DPGAAEF
Sbjct: 126 DTDSVQLLQRKLATAKDVLILGNGGIASELAYELKDVNVHWVVKDSHISATFVDPGAAEF 185
Query: 181 FQDSINKTNT--AKPETIFKRMRYNTGGEK------GPSLGPDWHTQVNLHGS--SRDTK 230
F ++N+ N + P KRMRY+ K G +LGPDWH V+L G+ + +
Sbjct: 186 FHIAMNECNAKDSSPVVAIKRMRYSEVLPKEQTNNHGAALGPDWHRSVDLSGAREGEENR 245
Query: 231 IT-IEYSCEVERIVDSEDDTCNAYVKLTN--GHTH--ACDIVVSAIGVVPNSNIQVHGTP 285
+ I Y + + D DD A VKL + G CD +VSA GV PN++ +P
Sbjct: 246 LPKIYYKSRISSVQDLADDA-GAIVKLEHEDGSFQQLTCDFIVSATGVWPNTDYTCD-SP 303
Query: 286 FELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMV 345
+ + D GI V+E+M+T++ +V+AAGDVCT +W A WFQMRLWTQA+ MG+ A + M
Sbjct: 304 LQFSDDGGISVDEMMRTNLVDVFAAGDVCTANWPAAMHWFQMRLWTQARQMGSMAGRSMA 363
Query: 346 GAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIKLVM 405
A + E V QDF FE+F H+TK FGY V+LLG FNGQ L DYEIL+R TR +EYIK V+
Sbjct: 364 AASEGESVYQDFCFELFGHVTKLFGYPVVLLGRFNGQDLGRDYEILVRCTRNKEYIKFVL 423
Query: 406 KDGRMQGAVLIGETEIEEMCENLILNQLDLTXXXXXXXXXXXXXXXYFD 454
++GR++GA+LIG T++ E CENLILN +DL YFD
Sbjct: 424 QNGRLRGAMLIGNTDLAETCENLILNGIDLEPYGDDILNPDIDIEDYFD 472
|
|
| UNIPROTKB|Q8WU10 PYROXD1 "Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 582 (209.9 bits), Expect = 3.6e-101, Sum P(2) = 3.6e-101
Identities = 109/212 (51%), Positives = 145/212 (68%)
Query: 243 VDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQT 302
V ++ + YV+LTN + CD +VSA GV PN +HG F+L D G+ V++ M T
Sbjct: 289 VTADTEMWPVYVELTNEKIYGCDFIVSATGVTPNVEPFLHGNSFDLGEDGGLKVDDHMHT 348
Query: 303 SISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMF 362
S+ ++YAAGD+CT SW L+ W QMRLWTQA+ MG YAAKCM A + + DFSFE+F
Sbjct: 349 SLPDIYAAGDICTTSWQLSPVWQQMRLWTQARQMGWYAAKCMAAASSGDSIDMDFSFELF 408
Query: 363 THMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIKLVMKDGRMQGAVLIGETEIE 422
H+TKFF YKV+LLG +N Q L +D+E++LR T+G EYIK+VM++GRM GAVLIGET++E
Sbjct: 409 AHVTKFFNYKVVLLGKYNAQGLGSDHELMLRCTKGREYIKVVMQNGRMMGAVLIGETDLE 468
Query: 423 EMCENLILNQLDLTXXXXXXXXXXXXXXXYFD 454
E ENLILNQ++L+ YFD
Sbjct: 469 ETFENLILNQMNLSSYGEDLLDPNIDIEDYFD 500
|
|
| UNIPROTKB|A7YVH9 PYROXD1 "Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 555 (200.4 bits), Expect = 1.1e-99, Sum P(2) = 1.1e-99
Identities = 105/215 (48%), Positives = 146/215 (67%)
Query: 240 ERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNEL 299
++ V ++ + YV+LTN + CD +VSA GV PN+ + G F++ D G+ V++
Sbjct: 288 DQSVTTDKEIWPVYVELTNEKIYGCDFIVSATGVTPNTEPFLCGNNFDVGEDGGLKVDDH 347
Query: 300 MQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSF 359
M TS+ ++YAAGD+CT +W + W QMRLWTQA+ MG YAAKCM A E + DFSF
Sbjct: 348 MHTSLPDIYAAGDICTAAWHPSPVWQQMRLWTQARQMGWYAAKCMAAASVGESIDMDFSF 407
Query: 360 EMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIKLVMKDGRMQGAVLIGET 419
E+F H+TKFF YKV+LLG +N Q L +++E+LLR T+G+EYIK V+++GRM GAVLIGET
Sbjct: 408 ELFAHVTKFFNYKVVLLGKYNAQGLGSNHELLLRCTKGQEYIKAVLQNGRMMGAVLIGET 467
Query: 420 EIEEMCENLILNQLDLTXXXXXXXXXXXXXXXYFD 454
++EE ENLILNQ++L+ YFD
Sbjct: 468 DLEETFENLILNQMNLSAYGEDLLDPNIDIEDYFD 502
|
|
| RGD|1303253 Pyroxd1 "pyridine nucleotide-disulphide oxidoreductase domain 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
Identities = 113/225 (50%), Positives = 149/225 (66%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELA 289
K ++ + + + V + + YV+LTNG + CD +VSA GV PN +HG F+L
Sbjct: 274 KKSLAFPKDHHKSVTVDKEMWPVYVELTNGSIYGCDFLVSATGVTPNVQPFLHGNDFDLG 333
Query: 290 PDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349
D G+ V+E M+TS+ ++YAAGD+CT W + W QMRLWTQA+ MG YAAKCM A
Sbjct: 334 EDGGLRVDEQMRTSLPDIYAAGDICTACWPPSPVWQQMRLWTQARQMGCYAAKCMAAATM 393
Query: 350 NEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIKLVMKDGR 409
P+ DFSFE+F H+TKFF YKV+LLG +N Q L D+E++LR TRG+EYIK+VM +GR
Sbjct: 394 GHPIDMDFSFELFAHVTKFFNYKVVLLGKYNAQGLGVDHELMLRCTRGQEYIKVVMHNGR 453
Query: 410 MQGAVLIGETEIEEMCENLILNQLDLTXXXXXXXXXXXXXXXYFD 454
M GAVLIGET++EE ENLILNQ+DL+ YFD
Sbjct: 454 MMGAVLIGETDLEETFENLILNQMDLSSYGEDLLNPDIDIEDYFD 498
|
|
| MGI|MGI:2676395 Pyroxd1 "pyridine nucleotide-disulphide oxidoreductase domain 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 579 (208.9 bits), Expect = 4.7e-97, Sum P(2) = 4.7e-97
Identities = 110/225 (48%), Positives = 150/225 (66%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELA 289
K ++ + + + V ++ + YV+LTNG + CD +VSA GV PN + +H F L
Sbjct: 274 KKSLAFPKDHHKSVTADKEMWPVYVELTNGTIYGCDFLVSATGVTPNVHPFLHRNNFALG 333
Query: 290 PDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349
D G+ V++ M+TS+ ++YAAGD+CT W + W QMRLWTQA+ MG YAAKCM A
Sbjct: 334 EDGGLRVDDQMRTSLPDIYAAGDICTACWQPSPVWQQMRLWTQARQMGYYAAKCMAAASM 393
Query: 350 NEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIKLVMKDGR 409
P+ DFSFE+F H+TKFF YKV+LLG +N Q L D+E++LR TRG+EY+K+VM++GR
Sbjct: 394 GHPIDMDFSFELFAHVTKFFNYKVVLLGKYNAQGLGADHELMLRCTRGQEYVKVVMQNGR 453
Query: 410 MQGAVLIGETEIEEMCENLILNQLDLTXXXXXXXXXXXXXXXYFD 454
M GAVLIGET++EE ENLILNQ+DL+ YFD
Sbjct: 454 MMGAVLIGETDLEETFENLILNQMDLSSYGEDLLDPNIDIEDYFD 498
|
|
| UNIPROTKB|F1NPI8 PYROXD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 8.8e-96, Sum P(2) = 8.8e-96
Identities = 105/202 (51%), Positives = 139/202 (68%)
Query: 253 YVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGD 312
YV+LTNG + C+ +VSA GVVPN + G F + D G+ V++ M TS+ +YAAGD
Sbjct: 300 YVELTNGKIYGCNFIVSATGVVPNVKPFLDGNNFAIGEDGGLKVDKHMHTSLPGIYAAGD 359
Query: 313 VCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYK 372
+CT +W+ + W QMRLWTQA+ MG YAAKCM E + DFSFE+F H+TKFF YK
Sbjct: 360 ICTAAWEPSSVWHQMRLWTQARQMGWYAAKCMAADTTGESIDLDFSFELFAHVTKFFNYK 419
Query: 373 VILLGLFNGQTLENDYEILLRVTRGEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQ 432
V++LG FN Q L D+E++LR T+G+EY+K+VM++GRM GAVLIGET++EE ENLILNQ
Sbjct: 420 VVVLGKFNAQGLGLDHELMLRCTKGQEYVKVVMQNGRMMGAVLIGETDLEETFENLILNQ 479
Query: 433 LDLTXXXXXXXXXXXXXXXYFD 454
+DL+ YFD
Sbjct: 480 MDLSAYGEDLLNPDIDIEDYFD 501
|
|
| UNIPROTKB|B3KWN8 PYROXD1 "cDNA FLJ43472 fis, clone OCBBF2037638" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 582 (209.9 bits), Expect = 4.3e-92, Sum P(2) = 4.3e-92
Identities = 109/212 (51%), Positives = 145/212 (68%)
Query: 243 VDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQT 302
V ++ + YV+LTN + CD +VSA GV PN +HG F+L D G+ V++ M T
Sbjct: 218 VTADTEMWPVYVELTNEKIYGCDFIVSATGVTPNVEPFLHGNSFDLGEDGGLKVDDHMHT 277
Query: 303 SISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMF 362
S+ ++YAAGD+CT SW L+ W QMRLWTQA+ MG YAAKCM A + + DFSFE+F
Sbjct: 278 SLPDIYAAGDICTTSWQLSPVWQQMRLWTQARQMGWYAAKCMAAASSGDSIDMDFSFELF 337
Query: 363 THMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIKLVMKDGRMQGAVLIGETEIE 422
H+TKFF YKV+LLG +N Q L +D+E++LR T+G EYIK+VM++GRM GAVLIGET++E
Sbjct: 338 AHVTKFFNYKVVLLGKYNAQGLGSDHELMLRCTKGREYIKVVMQNGRMMGAVLIGETDLE 397
Query: 423 EMCENLILNQLDLTXXXXXXXXXXXXXXXYFD 454
E ENLILNQ++L+ YFD
Sbjct: 398 ETFENLILNQMNLSSYGEDLLDPNIDIEDYFD 429
|
|
| UNIPROTKB|F1SQZ8 PYROXD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 560 (202.2 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 107/212 (50%), Positives = 143/212 (67%)
Query: 243 VDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQT 302
V ++ + YV+LTN + CD +VSA GV PN+ + G F++ D G+ V++ M T
Sbjct: 276 VTTDKEIWPVYVELTNEKIYGCDFIVSATGVTPNTEPFLCGNNFDVGDDGGLKVDDHMHT 335
Query: 303 SISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMF 362
S+ ++YAAGD+CT SW + W QMRLWTQA+ MG YAAKCM A E + DFSFE+F
Sbjct: 336 SLPDIYAAGDICTASWQPSPVWQQMRLWTQARQMGWYAAKCMAAASVGESIDMDFSFELF 395
Query: 363 THMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIKLVMKDGRMQGAVLIGETEIE 422
H+TKFF YKV+LLG +N Q L D+E+LLR T+G+EYIK V+++GRM GAVLIGET++E
Sbjct: 396 AHVTKFFNYKVVLLGKYNAQGLGPDHELLLRCTKGQEYIKAVLQNGRMMGAVLIGETDLE 455
Query: 423 EMCENLILNQLDLTXXXXXXXXXXXXXXXYFD 454
E ENLILNQ++L+ YFD
Sbjct: 456 ETFENLILNQMNLSAYGEDLLDPNIDIEDYFD 487
|
|
| UNIPROTKB|J9PBH9 PYROXD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 565 (203.9 bits), Expect = 5.6e-90, Sum P(2) = 5.6e-90
Identities = 106/194 (54%), Positives = 142/194 (73%)
Query: 243 VDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQT 302
V ++ + YV+LTN T+ CD +VSA GV PN+ + G F+L D G+ V+ M T
Sbjct: 220 VTTDKEAWPVYVELTNEKTYGCDFIVSATGVTPNTEPFLCGNNFDLGEDGGLKVDAQMHT 279
Query: 303 SISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMF 362
S+S+VYAAGD+CT SW + W QMRLWTQA+ MG YAAKCM A E + DFSFE+F
Sbjct: 280 SVSDVYAAGDICTASWPPSPFWQQMRLWTQARQMGWYAAKCMAAASLGESIDLDFSFELF 339
Query: 363 THMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIKLVMKDGRMQGAVLIGETEIE 422
H+TKFF YKV+LLG +N Q L +D+E++LR T+G+EY+K+VM++G+M GAVLIGET++E
Sbjct: 340 AHVTKFFNYKVVLLGKYNAQGLGSDHELMLRCTKGQEYVKVVMQNGQMMGAVLIGETDLE 399
Query: 423 EMCENLILNQLDLT 436
E E+LILNQ DL+
Sbjct: 400 ETFEHLILNQTDLS 413
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8WU10 | PYRD1_HUMAN | 1, ., 8, ., 1, ., - | 0.4509 | 0.9625 | 0.874 | yes | N/A |
| Q68FS6 | PYRD1_RAT | 1, ., 8, ., 1, ., - | 0.4437 | 0.9625 | 0.8775 | yes | N/A |
| Q54H36 | PYRD1_DICDI | 1, ., 8, ., 1, ., - | 0.3604 | 0.9867 | 0.8205 | yes | N/A |
| Q6PBT5 | PYRD1_DANRE | 1, ., 8, ., 1, ., - | 0.4655 | 0.9867 | 0.9142 | yes | N/A |
| Q3TMV7 | PYRD1_MOUSE | 1, ., 8, ., 1, ., - | 0.4372 | 0.9669 | 0.8815 | yes | N/A |
| A7YVH9 | PYRD1_BOVIN | 1, ., 8, ., 1, ., - | 0.4534 | 0.9581 | 0.8665 | yes | N/A |
| Q5REJ2 | PYRD1_PONAB | 1, ., 8, ., 1, ., - | 0.4518 | 0.9647 | 0.876 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 454 | |||
| COG1251 | 793 | COG1251, NirB, NAD(P)H-nitrite reductase [Energy p | 6e-24 | |
| COG0446 | 415 | COG0446, HcaD, Uncharacterized NAD(FAD)-dependent | 3e-22 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 6e-22 | |
| COG1249 | 454 | COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas | 7e-15 | |
| PRK04965 | 377 | PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu | 1e-13 | |
| TIGR03385 | 427 | TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | 3e-13 | |
| TIGR02374 | 785 | TIGR02374, nitri_red_nirB, nitrite reductase [NAD( | 3e-12 | |
| PRK09754 | 396 | PRK09754, PRK09754, phenylpropionate dioxygenase f | 9e-11 | |
| PRK13512 | 438 | PRK13512, PRK13512, coenzyme A disulfide reductase | 1e-10 | |
| PRK09564 | 444 | PRK09564, PRK09564, coenzyme A disulfide reductase | 1e-09 | |
| COG0492 | 305 | COG0492, TrxB, Thioredoxin reductase [Posttranslat | 7e-08 | |
| PRK06116 | 450 | PRK06116, PRK06116, glutathione reductase; Validat | 8e-08 | |
| TIGR01350 | 460 | TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog | 1e-07 | |
| PRK12770 | 352 | PRK12770, PRK12770, putative glutamate synthase su | 3e-07 | |
| PRK06292 | 460 | PRK06292, PRK06292, dihydrolipoamide dehydrogenase | 3e-06 | |
| PRK11749 | 457 | PRK11749, PRK11749, dihydropyrimidine dehydrogenas | 4e-06 | |
| PRK07251 | 438 | PRK07251, PRK07251, pyridine nucleotide-disulfide | 9e-06 | |
| TIGR01423 | 486 | TIGR01423, trypano_reduc, trypanothione-disulfide | 3e-05 | |
| TIGR02053 | 463 | TIGR02053, MerA, mercuric reductase | 4e-05 | |
| PRK07846 | 451 | PRK07846, PRK07846, mycothione reductase; Reviewed | 8e-05 | |
| PRK06370 | 463 | PRK06370, PRK06370, mercuric reductase; Validated | 8e-05 | |
| PRK05249 | 461 | PRK05249, PRK05249, soluble pyridine nucleotide tr | 2e-04 | |
| TIGR03452 | 452 | TIGR03452, mycothione_red, mycothione reductase | 3e-04 | |
| PRK06327 | 475 | PRK06327, PRK06327, dihydrolipoamide dehydrogenase | 7e-04 | |
| TIGR01316 | 449 | TIGR01316, gltA, glutamate synthase (NADPH), homot | 0.001 | |
| TIGR01292 | 299 | TIGR01292, TRX_reduct, thioredoxin-disulfide reduc | 0.001 | |
| PRK06912 | 458 | PRK06912, acoL, dihydrolipoamide dehydrogenase; Va | 0.002 | |
| PRK12778 | 752 | PRK12778, PRK12778, putative bifunctional 2-polypr | 0.003 | |
| PRK07818 | 466 | PRK07818, PRK07818, dihydrolipoamide dehydrogenase | 0.003 |
| >gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 6e-24
Identities = 117/475 (24%), Positives = 170/475 (35%), Gaps = 113/475 (23%)
Query: 6 LIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTK-LLSDI-----TVEE 59
+IIG G+AG +E L L + +T V + LLS + T E+
Sbjct: 7 VIIGNGMAGHRTIEEL--LESAPDLYDIT----VFGEEPRPNYNRILLSSVLAGEKTAED 60
Query: 60 TDANKFE-----GLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWY-- 112
N+ + G+ + V ID V T+ + Y L I TG+ P +
Sbjct: 61 ISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPG 120
Query: 113 --SPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDI-VWVVKDKHIS 169
P V R D V + + ++ KK VVIG G + E L ++ + V VV HI+
Sbjct: 121 SDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVV---HIA 177
Query: 170 ATF----LDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGS 225
T LD A + + LG + N
Sbjct: 178 PTLMERQLDRTAGRLLRRKLED------------------------LGIKVLLEKN---- 209
Query: 226 SRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTP 285
E IV ED V+ +G D+VV A+G+ PN
Sbjct: 210 -------------TEEIVG-EDKVEG--VRFADGTEIPADLVVMAVGIRPND-------- 245
Query: 286 FELAPDCGIGVNE------LMQTSISNVYAAGDVCTPSWDLAKQWFQMR------LWTQA 333
ELA + G+ VN MQTS ++YA G+ + L+ QA
Sbjct: 246 -ELAKEAGLAVNRGIVVNDYMQTSDPDIYAVGECA--------EHRGKVYGLVAPLYEQA 296
Query: 334 KHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLR 393
K A + G T + K G V G F E I+ R
Sbjct: 297 K----VLADHLCGGEAEAYEGSV----TSTKL-KVSGVDVFSAGDFQET--EGAESIVFR 345
Query: 394 VTRGEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNID 448
+ Y KLV+KD ++ GAVL G+T +LIL D+++I D L+ P
Sbjct: 346 DEQRGIYKKLVLKDDKIVGAVLYGDTSDGGWLLDLILKGADISEIRDTLILPQGS 400
|
Length = 793 |
| >gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.1 bits (244), Expect = 3e-22
Identities = 82/430 (19%), Positives = 141/430 (32%), Gaps = 60/430 (13%)
Query: 5 YLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK----AVTKTVPVTKLLSDITVEET 60
+I+GGG AG+S L L I L+ ++ V +
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPP 60
Query: 61 DANKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRK--IWYSPHVIT 118
N+ G+ V +IDP V+ + I+Y L + TGA PR I V+T
Sbjct: 61 RFNRATGIDVRTGTEVTSIDPENKVVLLDD-GEIEYDYLVLATGARPRPPPISDWEGVVT 119
Query: 119 IRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHEL--SNVDIVWVVKDKHISATFLDPG 176
+R + L+ + K +VV+G G I E + + + LDP
Sbjct: 120 LRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPE 179
Query: 177 AAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYS 236
AE + + + +
Sbjct: 180 VAEELA---------------ELLEKY--------------------------GVELLLG 198
Query: 237 CEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGV 296
+V + + V +G D+V+ G PN + P + V
Sbjct: 199 TKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLV 258
Query: 297 NELMQTS-ISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQ 355
+E TS +VYAAGDV + ++ LW A G AA+ + GA++ ++
Sbjct: 259 DERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGALRIPGLLG 318
Query: 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIKLVMKDGRMQGAVL 415
GL G E +++L V+ G++ + + G L
Sbjct: 319 TVIS-------DVGDLCAASTGLTEG--KERGIDVVLVVSGGKDPRAHLYPGAELVGIKL 369
Query: 416 IGETEIEEMC 425
+G+ + +
Sbjct: 370 VGDADTGRIL 379
|
Length = 415 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 6e-22
Identities = 77/332 (23%), Positives = 114/332 (34%), Gaps = 72/332 (21%)
Query: 5 YLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG--------IVKAV------TKTVPVTK 50
+IIGGG AG++ LA G + L+ G + K + + +
Sbjct: 2 VVIIGGGPAGLAAAIRLA--RLGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGL 59
Query: 51 LLSDITVEETDANKFEGLCTVIVDTVAAIDP---RVNCVITEKQNRIKYKTLCICTGASP 107
L + +E G V ID V E I Y L I TGA P
Sbjct: 60 ALPEEVYKEFGVEVLLG------TEVVDIDRGEKTVVLKDVETGREITYDKLIIATGARP 113
Query: 108 RKIWYS-PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSN--VDIVWVVK 164
R V T+R + E L+ K++VV+G G I EL L+ ++ V +
Sbjct: 114 RIPGIPGVEVATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGKEVTVVER 173
Query: 165 DKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHG 224
+ A D +A + K + G
Sbjct: 174 RDRLLARADDEISAALLE---------------KLEKLLLGVTVL--------------- 203
Query: 225 SSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGT 284
V +V D VKL +G D+V+ AIG PN+ + +
Sbjct: 204 -------------LVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIGRRPNTEL-LEQA 249
Query: 285 PFELAPDCGIGVNELMQTSISNVYAAGDVCTP 316
EL I V+E ++TS+ +YAAGDV
Sbjct: 250 GVELDERGYIVVDEYLRTSVPGIYAAGDVAEG 281
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 7e-15
Identities = 83/391 (21%), Positives = 122/391 (31%), Gaps = 104/391 (26%)
Query: 1 MEFTYLIIGGGIAG-----------------------------VSCVEGLAFLHPGESI- 30
E+ ++IG G AG V C+ A LH E I
Sbjct: 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIE 62
Query: 31 --GLVTPSGIVKAVTKTVPVTKLLSDI-TVEETDANKFEGL-----CTVIVDTVAAIDPR 82
+ A + KLL+ V EGL VI +DP
Sbjct: 63 EARHAAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPH 122
Query: 83 VNCVITEKQNRIKYKTLCICTGASPRKI----WYSPHVITIRDTDSVAVLQEKLKSAKKI 138
V E + I + I TG+ PR ++ D A+ +L K +
Sbjct: 123 TVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILDSSD----ALFLLELP--KSL 176
Query: 139 VVIGNGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETI 196
V++G G I E + + V + I DP ++ + K
Sbjct: 177 VIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGE-DPEISKELTKQLEK--------- 226
Query: 197 FKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL 256
GG K +TK+T + +V ED
Sbjct: 227 --------GGVK-------ILL---------NTKVTAVEKKDDGVLVTLEDGE------- 255
Query: 257 TNGHTHACDIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCT 315
G T D V+ AIG PN+ + + EL I V++ M T++ +YA GDV
Sbjct: 256 --GGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIG 313
Query: 316 PSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346
LA A G AA+ + G
Sbjct: 314 G-PMLA---------HVAMAEGRIAAENIAG 334
|
Length = 454 |
| >gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 50/249 (20%), Positives = 93/249 (37%), Gaps = 68/249 (27%)
Query: 76 VAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSP------HVITIRDTDSVAVLQ 129
V ID V + + N+ +Y L + TGAS + P ++T+ +
Sbjct: 81 VTDIDAEAQVVKS-QGNQWQYDKLVLATGASA----FVPPIPGRELMLTLNSQQEYRAAE 135
Query: 130 EKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTN 189
+L+ A++++V+G G I TEL +L K + T +D A+
Sbjct: 136 TQLRDAQRVLVVGGGLIGTELAMDLCR-------AGKAV--TLVDNAASLL--------- 177
Query: 190 TAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDT 249
SL P + L + + + +++ + ++
Sbjct: 178 --------------------ASLMPPEVSS-RLQHRLTEMGVHLLLKSQLQGLEKTDSGI 216
Query: 250 CNAYVKLTNGHTHACDIVVSAIGVVPN------SNIQVHGTPFELAPDCGIGVNELMQTS 303
L +G + D V++A G+ PN + + V+ GI V+ +QTS
Sbjct: 217 R---ATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNR---------GIVVDSYLQTS 264
Query: 304 ISNVYAAGD 312
++YA GD
Sbjct: 265 APDIYALGD 273
|
Length = 377 |
| >gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 3e-13
Identities = 75/327 (22%), Positives = 117/327 (35%), Gaps = 88/327 (26%)
Query: 76 VAAIDPRVNCVI-----TEKQNRIKYKTLCICTGASPRKI----WYSPHVITIR---DTD 123
V ++ V+ T + Y L + GASP V T+R DTD
Sbjct: 67 VIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTD 126
Query: 124 SVAVLQEKLKSAKKIVVIGNGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFF 181
++ +K + +V+IG G I E+ L ++ + + + I D +
Sbjct: 127 AIKQYIDK-NKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIV 185
Query: 182 QDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVER 241
++ + K +NL + EV+
Sbjct: 186 EEELKKHE------------------------------INLR-----------LNEEVDS 204
Query: 242 IVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCG-------- 293
I E T+G + D+V+ A G+ PNS ELA D G
Sbjct: 205 IEGEE-----RVKVFTSGGVYQADMVILATGIKPNS---------ELAKDSGLKLGETGA 250
Query: 294 IGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPV 353
I VNE QTS+ N+YAAGDV + K+ + L A MG A + + G
Sbjct: 251 IWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAG------- 303
Query: 354 IQDFSFEMF--THMTKFFGYKVILLGL 378
D F+ T++TKFF + G+
Sbjct: 304 -NDIEFKGVLGTNITKFFDLTIASTGV 329
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427 |
| >gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 3e-12
Identities = 103/454 (22%), Positives = 163/454 (35%), Gaps = 99/454 (21%)
Query: 7 IIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSGIVKAVTKTVPVTKLLS------DITVEE 59
++G G+AG C+E + L+ I + + ++ +L DIT+
Sbjct: 3 LVGNGMAGHRCIEEVLKLNRHMFEITIFGEEP--HPNYNRILLSSVLQGEADLDDITLNS 60
Query: 60 TDANKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSP----- 114
D + G+ +TV ID VIT+ + Y L + TG+ P + P
Sbjct: 61 KDWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYP---FILPIPGAD 117
Query: 115 ----HVI-TIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDI-VWVVK-DKH 167
+V TI D D+ + + KK VIG G + E L N+ + V V+
Sbjct: 118 KKGVYVFRTIEDLDA---IMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPG 174
Query: 168 ISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSR 227
+ A LD A Q + + G + + +
Sbjct: 175 LMAKQLDQTAGRLLQRELEQ------------------------KGLTFLLEKDTVEIVG 210
Query: 228 DTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFE 287
TK +RI + +G + D++V A G+ PN E
Sbjct: 211 ATK--------ADRI------------RFKDGSSLEADLIVMAAGIRPND---------E 241
Query: 288 LAPDCGIGV------NELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAA 341
LA GI V N+ MQTS ++YA G+ + L+ QAK A
Sbjct: 242 LAVSAGIKVNRGIIVNDSMQTSDPDIYAVGECA--EHNGRVYGLVAPLYEQAK----VLA 295
Query: 342 KCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYI 401
+ G E D S ++ K G V G E I + + Y
Sbjct: 296 DHICGVECEEYEGSDLSAKL-----KLLGVDVWSAGDAQET--ERTTSIKIYDEQKGIYK 348
Query: 402 KLVMKDGRMQGAVLIGETEIEEMCENLILNQLDL 435
KLV+ D ++ GAVL G+T +++L Q D+
Sbjct: 349 KLVLSDDKLLGAVLFGDTSDYGRLLDMVLKQADI 382
|
[Central intermediary metabolism, Nitrogen metabolism]. Length = 785 |
| >gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 9e-11
Identities = 56/279 (20%), Positives = 93/279 (33%), Gaps = 57/279 (20%)
Query: 75 TVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKI----WYSPHVITIRDTDSVAVLQE 130
T+ + ++ + L I TGA+ R + T+R A L+E
Sbjct: 80 TIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLRE 139
Query: 131 KLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNT 190
L+ + +V++G G I EL AA Q T
Sbjct: 140 VLQPERSVVIVGAGTIGLEL--------------------------AASATQRRCKVTVI 173
Query: 191 AKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTC 250
T+ G P + + H + + I + +E +VD E
Sbjct: 174 ELAATVM--------GRNAPPPVQRY--LLQRH---QQAGVRILLNNAIEHVVDGEK--- 217
Query: 251 NAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAA 310
+ L +G T D+V+ IG+ N + L GI ++E +T ++A
Sbjct: 218 -VELTLQSGETLQADVVIYGIGISANDQLAREAN---LDTANGIVIDEACRTCDPAIFAG 273
Query: 311 GDVC---TPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346
GDV + L + W A + AA M+G
Sbjct: 274 GDVAITRLDNGALHRC----ESWENANNQAQIAAAAMLG 308
|
Length = 396 |
| >gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 1e-10
Identities = 49/251 (19%), Positives = 91/251 (36%), Gaps = 62/251 (24%)
Query: 76 VAAIDPRVNCV-----ITEKQNRIKYKTLCICTGASPRKIWY-SPHVITIR---DTDSVA 126
V AI+ V T +Q Y L + GAS + + S T+R DTD++
Sbjct: 81 VIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAID 140
Query: 127 VLQEKLKSAKKIVVIGNGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDS 184
+ + K +V+G G I+ E++ L + + + I+ +
Sbjct: 141 QFIKANQ-VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN---------KLMDAD 190
Query: 185 INKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVD 244
+N+ I + +I + E++ I
Sbjct: 191 MNQP-------ILDELD--------------------------KREIPYRLNEEIDAING 217
Query: 245 SEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSI 304
+E V +G D+++ +G PNS + + +L I VN+ +T++
Sbjct: 218 NE-------VTFKSGKVEHYDMIIEGVGTHPNSKF-IESSNIKLDDKGFIPVNDKFETNV 269
Query: 305 SNVYAAGDVCT 315
N+YA GD+ T
Sbjct: 270 PNIYAIGDIIT 280
|
Length = 438 |
| >gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 57/250 (22%), Positives = 88/250 (35%), Gaps = 67/250 (26%)
Query: 88 TEKQNRIKYKTLCICTGASPRKIWYSP--------HVITIRDTDSVAVLQEKLK--SAKK 137
T Y L I TGA P P +V T++ + L+E LK K
Sbjct: 96 TGSIFNDTYDKLMIATGARP----IIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKN 151
Query: 138 IVVIGNGGIATELVHEL----SNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKP 193
IV+IG G I E V NV I+ + I D + ++ + +
Sbjct: 152 IVIIGAGFIGLEAVEAAKHLGKNVRIIQ--LEDRILPDSFDKEITDVMEEELRENG---- 205
Query: 194 ETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAY 253
V LH + V+ + ED
Sbjct: 206 --------------------------VELH-----------LNEFVKSL-IGED---KVE 224
Query: 254 VKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
+T+ + D+V+ A GV PN+ + T + + I V+E +TSI N+YAAGD
Sbjct: 225 GVVTDKGEYEADVVIVATGVKPNTEF-LEDTGLKTLKNGAIIVDEYGETSIENIYAAGD- 282
Query: 314 CTPSWDLAKQ 323
C +++
Sbjct: 283 CATIYNIVSN 292
|
Length = 444 |
| >gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 7e-08
Identities = 70/341 (20%), Positives = 111/341 (32%), Gaps = 98/341 (28%)
Query: 6 LIIGGGIAGVSC--------------VEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL 51
+IIGGG AG++ +EG PG + T + +L
Sbjct: 7 IIIGGGPAGLTAAIYAARAGLKVVLILEGGE---PGGQLTKTTDVENYPGFPGGILGPEL 63
Query: 52 LSDITVEETDANKFEGLCTVIVDTVAAIDPRVN--CVITEKQNRIKYKTLCICTGASPRK 109
+ + + A KF ++ D V ++ V T+K + K + I TGA RK
Sbjct: 64 MEQM---KEQAEKFG--VEIVEDEVEKVELEGGPFKVKTDK-GTYEAKAVIIATGAGARK 117
Query: 110 I--------W-YSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIV 160
+ D K +VVIG G V E
Sbjct: 118 LGVPGEEEFEGKGVSYCATCDGFFKG---------KDVVVIGGG---DSAVEE------- 158
Query: 161 WVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQV 220
A +L + AK T+ R +
Sbjct: 159 ---------ALYL--------------SKIAKKVTLVHR---------RDEFRAEEILVE 186
Query: 221 NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG----HTHACDIVVSAIGVVPN 276
L ++ KI + + V+ I+ + + V L N D V AIG +PN
Sbjct: 187 RLK---KNVKIEVLTNTVVKEILGDDVEG----VVLKNVKGEEKELPVDGVFIAIGHLPN 239
Query: 277 SNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPS 317
+ + L + I V+E M+TS+ ++AAGDV +
Sbjct: 240 TELLKGLG--VLDENGYIVVDEEMETSVPGIFAAGDVADKN 278
|
Length = 305 |
| >gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 8e-08
Identities = 39/182 (21%), Positives = 63/182 (34%), Gaps = 49/182 (26%)
Query: 136 KKIVVIGNGGIATEL---VHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAK 192
K++ V+G G IA E ++ L + V+ F DP E + + K
Sbjct: 168 KRVAVVGAGYIAVEFAGVLNGL-GSETHLFVRGDAPLRGF-DPDIRETLVEEMEK----- 220
Query: 193 PETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNA 252
KG L HT + + + D +
Sbjct: 221 ---------------KGIRL----HTN-----------------AVPKAVEKNADGSLT- 243
Query: 253 YVKLTNGHTHACDIVVSAIGVVPN-SNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAG 311
+ L +G T D ++ AIG PN + + +L I V+E T++ +YA G
Sbjct: 244 -LTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVG 302
Query: 312 DV 313
DV
Sbjct: 303 DV 304
|
Length = 450 |
| >gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 60/288 (20%), Positives = 100/288 (34%), Gaps = 62/288 (21%)
Query: 70 TVIVDTVAAIDPRVNCVITEK-QNRIKYKTLCICTGASPRKI--WYSPHVITIRDTDSVA 126
TVI +DP V E + ++ K + I TG+ PR + + + +
Sbjct: 105 TVIKGEAKFLDPGTVSVTGENGEETLEAKNIIIATGSRPRSLPGPFDFDGKVVITSTGAL 164
Query: 127 VLQEKLKSAKKIVVIGNGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDS 184
L+E +S +V+IG G I E ++ + + I D ++ Q +
Sbjct: 165 NLEEVPES---LVIIGGGVIGVEFASIFASLGSKVTVIEMLDRILP-GEDAEVSKVLQKA 220
Query: 185 INKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVD 244
+ K K ++ T T+V D ++T E
Sbjct: 221 LKK----------KGVKILTN------------TKV-TAVEKNDDQVTYE-------NKG 250
Query: 245 SEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN-SNIQVHGTPFELAPDCGIGVNELMQTS 303
E +T + V+ A+G PN + + EL I V+E M+T+
Sbjct: 251 GETETLTG------------EKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDEYMRTN 298
Query: 304 ISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351
+ +YA GDV LA A H G AA+ + G
Sbjct: 299 VPGIYAIGDV-IGGPMLAH---------VASHEGIVAAENIAGKEPAH 336
|
This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460 |
| >gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 265 DIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCT-PS 317
D VV AIG +P EL I V+E TS V+AAGDV T PS
Sbjct: 276 DTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPS 329
|
Length = 352 |
| >gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 3e-06
Identities = 54/229 (23%), Positives = 80/229 (34%), Gaps = 57/229 (24%)
Query: 93 RIKYKTLCICTGASPRKI---WY--SPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIA 147
RI+ K + I TG+ I W ++T +D L + KS + VIG G I
Sbjct: 128 RIEAKNIVIATGSRVPPIPGVWLILGDRLLT---SDDAFELDKLPKS---LAVIGGGVIG 181
Query: 148 TELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTG 205
EL LS V + + I DP ++ Q ++K
Sbjct: 182 LELGQALSRLGVKVTVFERGDRI-LPLEDPEVSKQAQKILSK------------------ 222
Query: 206 GEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACD 265
+ I+ +V + S D+ K T D
Sbjct: 223 ------------------------EFKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEAD 258
Query: 266 IVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
V+ A G PN+ + + T EL V+E QTS+ +YAAGDV
Sbjct: 259 YVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDV 307
|
Length = 460 |
| >gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 4e-06
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 260 HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNEL-MQTSISNVYAAGDVCT 315
T D+V+ AIG PN I EL I ++ +TS+ V+A GD+ T
Sbjct: 372 FTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVT 428
|
Length = 457 |
| >gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 9e-06
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN-SNIQVHGTPFELA 289
IT + + + D + +T T+ D ++ A G PN + + T EL
Sbjct: 213 ITFLLNAHTTEVKNDGDQV----LVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELT 268
Query: 290 PDCGIGVNELMQTSISNVYAAGDV 313
I V++ QTS+ V+A GDV
Sbjct: 269 ERGAIKVDDYCQTSVPGVFAVGDV 292
|
Length = 438 |
| >gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 3e-05
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 253 YVKLTNGHTHACDIVVSAIGVVPNSN-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAG 311
+V +G T D+V+ AIG VP + +Q+ EL I V+E +T++ N+YA G
Sbjct: 266 HVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNVPNIYAIG 325
Query: 312 DV 313
DV
Sbjct: 326 DV 327
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486 |
| >gnl|CDD|233700 TIGR02053, MerA, mercuric reductase | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 66/321 (20%), Positives = 110/321 (34%), Gaps = 62/321 (19%)
Query: 7 IIGGGIAGVSCVEGLAFLHPGESIGLV--TPSGIVKAVTKTVPVTKLLSDI--TVEETDA 62
+GG V CV L E P G + A T V +LL VEE
Sbjct: 33 PLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAA-TVAVDFGELLEGKREVVEELRH 91
Query: 63 NKFEGLCT-----VIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSPHVI 117
K+E + + + DP+ V + K I TGA P P +
Sbjct: 92 EKYEDVLSSYGVDYLRGRARFKDPKTVKV-DLGREVRGAKRFLIATGARPAI----PPIP 146
Query: 118 TIRDTD---SVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDI-VWVVKDKHISATFL 173
+++ S L + + + VIG G I EL + + V +++
Sbjct: 147 GLKEAGYLTSEEALALD-RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPRE 205
Query: 174 DPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITI 233
+P + ++++ E+G + T + S
Sbjct: 206 EPEISAAVEEALA--------------------EEGIEV----VTSAQVKAVSVRGGG-- 239
Query: 234 EYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN-IQVHGTPFELAPDC 292
+I+ E G A +++V A G PN++ + + +L
Sbjct: 240 -------KIITVE-------KPGGQGEVEADELLV-ATGRRPNTDGLGLEKAGVKLDERG 284
Query: 293 GIGVNELMQTSISNVYAAGDV 313
GI V+E ++TS +YAAGDV
Sbjct: 285 GILVDETLRTSNPGIYAAGDV 305
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463 |
| >gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 8e-05
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 240 ERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN-IQVHGTPFELAPDCGIGVNE 298
+V D ++L +G T D+++ A G VPN + + ++ D + V+E
Sbjct: 227 RNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDE 286
Query: 299 LMQTSISNVYAAGDVCTP 316
+TS V+A GDV +P
Sbjct: 287 YQRTSAEGVFALGDVSSP 304
|
Length = 451 |
| >gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 8e-05
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS---NIQVHGTPFE 287
I + + E R+ D ++ A+G VPN+ ++ G E
Sbjct: 227 IDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGV--E 284
Query: 288 LAPDCGIGVNELMQTSISNVYAAGDVC 314
I V++ ++T+ +YAAGD
Sbjct: 285 TDARGYIKVDDQLRTTNPGIYAAGDCN 311
|
Length = 463 |
| >gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 2e-04
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS---NIQVHG 283
RD+ +TI ++ EVE++ +D V L +G D ++ A G N+ N++ G
Sbjct: 227 RDSGVTIRHNEEVEKVEGGDDGV---IVHLKSGKKIKADCLLYANGRTGNTDGLNLENAG 283
Query: 284 TPFELAPDC-G-IGVNELMQTSISNVYAAGDV 313
L D G + VNE QT++ ++YA GDV
Sbjct: 284 ----LEADSRGQLKVNENYQTAVPHIYAVGDV 311
|
Length = 461 |
| >gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 242 IVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN-IQVHGTPFELAPDCGIGVNELM 300
+ E D + L +G T D+++ A G VPN + + E+ D I V+E
Sbjct: 232 VTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYG 291
Query: 301 QTSISNVYAAGDVCTP 316
+TS V+A GDV +P
Sbjct: 292 RTSARGVWALGDVSSP 307
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452 |
| >gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 7e-04
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 12/118 (10%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYV-KLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFEL 288
+ I ++ I AY T D ++ +IG VPN+ + + +L
Sbjct: 239 LDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKL 298
Query: 289 APDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346
I V++ +T++ NVYA GDV LA +A+ G A+ + G
Sbjct: 299 DERGFIPVDDHCRTNVPNVYAIGDV-VRGPMLAH---------KAEEEGVAVAERIAG 346
|
Length = 475 |
| >gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 260 HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
D V+ AIG N I T + + I V+E +TSI V+A GD+
Sbjct: 372 CKLEADAVIVAIGNGSNP-IMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDI 424
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449 |
| >gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTH-----ACDIVVSAIGVVPNSNIQVHGT 284
KI ++ V+ IV D+ VK+ N T D V AIG PN+ +
Sbjct: 190 KIEFLWNSTVKEIV--GDNKVEG-VKIKNTVTGEEEELEVDGVFIAIGHEPNTELLKG-- 244
Query: 285 PFELAPDCGIGVNELMQTSISNVYAAGDVC 314
EL + I +E M+TS+ V+AAGDV
Sbjct: 245 LLELDENGYIVTDEGMRTSVPGVFAAGDVR 274
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299 |
| >gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 265 DIVVSAIGVVPNSNIQVHGTPFELA----PDCGIGVNELMQTSISNVYAAGDV 313
+ V+ ++G P +V E A + GI VNE MQT++ ++YA GDV
Sbjct: 258 EFVLVSVGRKP----RVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYACGDV 306
|
Length = 458 |
| >gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 264 CDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCT 315
D+V+ ++GV PN + EL I V+E MQ+SI +YA GD+
Sbjct: 675 VDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVR 726
|
Length = 752 |
| >gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 63/230 (27%), Positives = 92/230 (40%), Gaps = 47/230 (20%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHA--CDIVVSAIGVVPNSNIQVHG----- 283
+ I +VE I D+ V +G D V+ AIG P V G
Sbjct: 228 VKILTGTKVESIDDN-GSKVTVTVSKKDGKAQELEADKVLQAIGFAPR----VEGYGLEK 282
Query: 284 TPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKC 343
T L I +++ M+T++ ++YA GDV AK ++L A+ G AA+
Sbjct: 283 TGVALTDRGAIAIDDYMRTNVPHIYAIGDVT------AK----LQLAHVAEAQGVVAAET 332
Query: 344 MVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEIL------------ 391
+ GA E + D + M T F +V GL Q E Y++
Sbjct: 333 IAGAETLE--LGD--YRMMPRAT-FCQPQVASFGLTEEQAREEGYDVKVAKFPFTANGKA 387
Query: 392 --LRVTRGEEYIKLVM--KDGRMQGAVLIGETEIEEMCENLILNQL-DLT 436
L G ++KLV K G + G LIG ++ E+ L L Q DLT
Sbjct: 388 HGLGDPTG--FVKLVADAKYGELLGGHLIGP-DVSELLPELTLAQKWDLT 434
|
Length = 466 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 454 | |||
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 100.0 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 100.0 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 100.0 | |
| PLN02507 | 499 | glutathione reductase | 100.0 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 100.0 | |
| PRK06116 | 450 | glutathione reductase; Validated | 100.0 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 100.0 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 100.0 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 100.0 | |
| PRK06370 | 463 | mercuric reductase; Validated | 100.0 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 100.0 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 100.0 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 100.0 | |
| PLN02546 | 558 | glutathione reductase | 100.0 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 100.0 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 100.0 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 100.0 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 100.0 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 100.0 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 100.0 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 100.0 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 100.0 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 100.0 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 100.0 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 100.0 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 100.0 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 100.0 | |
| KOG0405|consensus | 478 | 100.0 | ||
| KOG1335|consensus | 506 | 100.0 | ||
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 100.0 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 100.0 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 100.0 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 100.0 | |
| KOG1336|consensus | 478 | 100.0 | ||
| KOG4716|consensus | 503 | 100.0 | ||
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 100.0 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 100.0 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 100.0 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 100.0 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 100.0 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 100.0 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 100.0 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 100.0 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 100.0 | |
| KOG1346|consensus | 659 | 100.0 | ||
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 100.0 | |
| KOG2495|consensus | 491 | 100.0 | ||
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 100.0 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 100.0 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 100.0 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 99.98 | |
| KOG2755|consensus | 334 | 99.98 | ||
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 99.97 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 99.97 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 99.97 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 99.97 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 99.97 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 99.97 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 99.96 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 99.96 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 99.96 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 99.95 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 99.95 | |
| KOG0404|consensus | 322 | 99.95 | ||
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.94 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.94 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 99.93 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 99.93 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 99.88 | |
| KOG3851|consensus | 446 | 99.88 | ||
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.84 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.83 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.83 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.82 | |
| KOG0399|consensus | 2142 | 99.81 | ||
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.8 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 99.73 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.72 | |
| KOG1800|consensus | 468 | 99.68 | ||
| KOG1399|consensus | 448 | 99.66 | ||
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 99.66 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 99.65 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 99.61 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 99.29 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 99.12 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.1 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 99.08 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 99.06 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 99.02 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.01 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 98.96 | |
| PF02852 | 110 | Pyr_redox_dim: Pyridine nucleotide-disulphide oxid | 98.95 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 98.93 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 98.89 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 98.88 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 98.88 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 98.86 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 98.86 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.83 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 98.83 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 98.81 | |
| PLN02463 | 447 | lycopene beta cyclase | 98.79 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.79 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 98.78 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 98.75 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 98.73 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.73 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 98.72 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.72 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 98.71 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 98.7 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 98.7 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.68 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 98.68 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 98.68 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.66 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 98.65 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 98.63 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 98.62 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.62 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 98.61 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.6 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 98.59 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.58 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.58 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.58 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.57 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 98.57 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 98.55 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 98.52 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 98.52 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.52 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 98.51 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.51 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 98.5 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 98.5 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.5 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 98.5 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.49 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 98.49 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.49 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 98.48 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.48 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 98.47 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 98.46 | |
| PRK05868 | 372 | hypothetical protein; Validated | 98.46 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 98.46 | |
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 98.45 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 98.44 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 98.44 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 98.42 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 98.41 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 98.41 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 98.41 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 98.41 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 98.4 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 98.4 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 98.39 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.39 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 98.38 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 98.38 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 98.36 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.36 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 98.35 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.35 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.34 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 98.34 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 98.34 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 98.34 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 98.32 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 98.32 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 98.32 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 98.31 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 98.29 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 98.29 | |
| KOG2820|consensus | 399 | 98.28 | ||
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.27 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 98.27 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 98.27 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 98.26 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 98.26 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 98.25 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 98.25 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 98.24 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.24 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 98.24 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 98.24 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 98.23 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 98.22 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 98.22 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 98.21 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.2 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 98.2 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 98.2 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 98.18 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 98.18 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 98.18 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 98.17 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 98.16 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 98.16 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 98.16 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 98.15 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 98.15 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 98.15 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 98.15 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 98.15 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 98.14 | |
| PRK06116 | 450 | glutathione reductase; Validated | 98.13 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 98.13 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 98.1 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 98.09 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 98.09 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 98.08 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 98.08 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 98.07 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 98.07 | |
| PF14759 | 85 | Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LX | 98.06 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 98.05 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 98.05 | |
| PRK06370 | 463 | mercuric reductase; Validated | 98.05 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 98.05 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 98.05 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 98.04 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 98.04 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.03 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 98.03 | |
| PLN02985 | 514 | squalene monooxygenase | 98.02 | |
| PLN02507 | 499 | glutathione reductase | 98.02 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 98.01 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.0 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 98.0 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 97.99 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 97.99 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 97.97 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 97.97 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 97.97 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 97.96 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 97.96 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.96 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 97.95 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 97.95 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 97.94 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 97.94 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 97.93 | |
| KOG2665|consensus | 453 | 97.92 | ||
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 97.89 | |
| KOG1336|consensus | 478 | 97.89 | ||
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 97.88 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 97.85 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 97.84 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 97.83 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 97.83 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 97.83 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 97.82 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 97.8 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.78 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 97.76 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 97.76 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 97.75 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 97.73 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 97.72 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 97.72 | |
| KOG0029|consensus | 501 | 97.7 | ||
| KOG2311|consensus | 679 | 97.69 | ||
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 97.68 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 97.67 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 97.67 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 97.65 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 97.64 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 97.63 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 97.62 | |
| PLN02546 | 558 | glutathione reductase | 97.61 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.61 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 97.6 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 97.6 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 97.59 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.59 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 97.58 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 97.58 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 97.58 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 97.57 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 97.57 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 97.56 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 97.55 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 97.55 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 97.54 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 97.54 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 97.54 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 97.53 | |
| PLN02268 | 435 | probable polyamine oxidase | 97.52 | |
| KOG2415|consensus | 621 | 97.52 | ||
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 97.51 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 97.51 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 97.51 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 97.5 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 97.5 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 97.49 | |
| KOG2495|consensus | 491 | 97.48 | ||
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 97.46 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 97.46 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 97.46 | |
| KOG1298|consensus | 509 | 97.45 | ||
| KOG1399|consensus | 448 | 97.45 | ||
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 97.44 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 97.44 | |
| PLN02463 | 447 | lycopene beta cyclase | 97.43 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 97.43 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 97.42 | |
| PRK07121 | 492 | hypothetical protein; Validated | 97.41 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.41 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 97.41 | |
| KOG1276|consensus | 491 | 97.4 | ||
| PRK12831 | 464 | putative oxidoreductase; Provisional | 97.39 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 97.38 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 97.38 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 97.38 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 97.38 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 97.37 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 97.37 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 97.36 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.36 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.35 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 97.35 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 97.34 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 97.34 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 97.33 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 97.31 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 97.3 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 97.3 | |
| PLN02661 | 357 | Putative thiazole synthesis | 97.3 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 97.3 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.29 | |
| PLN02568 | 539 | polyamine oxidase | 97.29 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 97.28 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 97.28 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 97.28 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 97.24 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 97.23 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 97.23 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 97.23 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 97.22 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 97.21 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 97.21 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 97.21 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.2 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 97.2 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 97.2 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 97.18 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 97.17 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 97.16 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 97.15 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 97.15 | |
| KOG2404|consensus | 477 | 97.14 | ||
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 97.14 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 97.14 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.13 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.13 | |
| KOG1335|consensus | 506 | 97.12 | ||
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.12 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 97.11 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 97.1 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.09 | |
| PLN02676 | 487 | polyamine oxidase | 97.09 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 97.09 | |
| KOG2853|consensus | 509 | 97.08 | ||
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 97.07 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 97.07 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 97.06 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 97.05 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 97.04 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.03 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 97.03 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 97.02 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 97.01 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.01 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 97.01 | |
| KOG0685|consensus | 498 | 96.99 | ||
| PRK10015 | 429 | oxidoreductase; Provisional | 96.99 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 96.99 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 96.98 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 96.98 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 96.98 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 96.97 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 96.97 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 96.97 | |
| KOG2614|consensus | 420 | 96.96 | ||
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 96.93 | |
| PLN02815 | 594 | L-aspartate oxidase | 96.93 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 96.91 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 96.91 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.9 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 96.9 | |
| KOG2960|consensus | 328 | 96.89 | ||
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 96.89 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 96.89 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 96.88 | |
| PLN02487 | 569 | zeta-carotene desaturase | 96.88 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 96.87 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 96.87 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 96.87 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 96.86 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 96.84 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 96.81 | |
| PLN02612 | 567 | phytoene desaturase | 96.78 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 96.78 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 96.77 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 96.77 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 96.77 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 96.75 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 96.74 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 96.73 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 96.72 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 96.66 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 96.66 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 96.62 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 96.6 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 96.58 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 96.57 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 96.54 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 96.54 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 96.5 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 96.5 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 96.44 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 96.44 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 96.4 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 96.39 | |
| KOG2844|consensus | 856 | 96.38 | ||
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 96.32 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 96.32 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 96.29 | |
| PLN03000 | 881 | amine oxidase | 96.29 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 96.28 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 96.27 | |
| COG3573 | 552 | Predicted oxidoreductase [General function predict | 96.24 | |
| KOG0399|consensus | 2142 | 96.2 | ||
| PLN02976 | 1713 | amine oxidase | 96.19 | |
| KOG1346|consensus | 659 | 96.18 | ||
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 96.17 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 96.16 | |
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 96.02 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 95.98 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 95.98 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 95.91 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 95.86 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.8 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 95.78 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 95.71 | |
| PLN02785 | 587 | Protein HOTHEAD | 95.7 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 95.7 | |
| COG1206 | 439 | Gid NAD(FAD)-utilizing enzyme possibly involved in | 95.7 | |
| KOG2852|consensus | 380 | 95.68 | ||
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 95.58 | |
| KOG0042|consensus | 680 | 95.58 | ||
| KOG1238|consensus | 623 | 95.57 | ||
| PLN02985 | 514 | squalene monooxygenase | 95.45 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 95.32 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 95.31 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 95.28 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 95.09 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 95.04 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 94.99 | |
| KOG0404|consensus | 322 | 94.98 | ||
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 94.9 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 94.87 | |
| KOG2755|consensus | 334 | 94.86 | ||
| KOG2614|consensus | 420 | 94.74 | ||
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 94.56 | |
| KOG3851|consensus | 446 | 94.54 | ||
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 94.53 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 94.44 | |
| KOG4254|consensus | 561 | 94.43 | ||
| KOG3855|consensus | 481 | 94.26 | ||
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 94.24 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 94.19 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 94.11 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 94.05 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 94.03 | |
| KOG3923|consensus | 342 | 93.96 | ||
| PTZ00367 | 567 | squalene epoxidase; Provisional | 93.93 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 93.93 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 93.92 | |
| PRK07121 | 492 | hypothetical protein; Validated | 93.84 | |
| KOG2852|consensus | 380 | 93.79 | ||
| KOG2311|consensus | 679 | 93.79 | ||
| PLN02815 | 594 | L-aspartate oxidase | 93.73 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 93.73 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 93.66 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 93.65 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 93.65 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 93.56 |
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-56 Score=436.21 Aligned_cols=382 Identities=23% Similarity=0.309 Sum_probs=303.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC-Cccccccccccccccc--------------c----------ccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS-GIVKAVTKTVPVTKLL--------------S----------DIT 56 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~-~~~~~~~~~~~~~~~~--------------~----------~~~ 56 (454)
+||+||||+||||..||.+++++ |.+++++|+. ...+.|.++.+.+... . .++
T Consensus 4 ~yDvvVIG~GpaG~~aA~raa~~--G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id 81 (454)
T COG1249 4 EYDVVVIGAGPAGYVAAIRAAQL--GLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKID 81 (454)
T ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcC
Confidence 69999999999999999999999 7779999999 6888888775543211 0 112
Q ss_pred hhh-------------hHHHHH-hc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC--Cceeee
Q psy1545 57 VEE-------------TDANKF-EG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS--PHVITI 119 (454)
Q Consensus 57 ~~~-------------~~~~~~-~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~--~~~~~~ 119 (454)
+.. ...+.+ .. +++++.+++.+++++...|...+.+++.++++|||||++|+.|+++ ++.. +
T Consensus 82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~-~ 160 (454)
T COG1249 82 FEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGAR-I 160 (454)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCCe-E
Confidence 210 111222 23 9999999999999665444322237899999999999999999877 3322 4
Q ss_pred eccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhh
Q psy1545 120 RDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIF 197 (454)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~ 197 (454)
.+.++...+.+. |++++|||||++|+|+|..++ |++||++++.+++++. +|+++++.+.+.|.+
T Consensus 161 ~~s~~~l~~~~l---P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-~D~ei~~~~~~~l~~---------- 226 (454)
T COG1249 161 LDSSDALFLLEL---PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTKQLEK---------- 226 (454)
T ss_pred EechhhcccccC---CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-CCHHHHHHHHHHHHh----------
Confidence 455555444433 999999999999999999997 9999999999999995 899999999999865
Q ss_pred hhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCc--EEecCEEEEeeccCc
Q psy1545 198 KRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGH--THACDIVVSAIGVVP 275 (454)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~--~~~~D~vi~a~G~~p 275 (454)
.|+++++++.+++++..++ .+.+.+++|. ++++|.+++|+|++|
T Consensus 227 -------------------------------~gv~i~~~~~v~~~~~~~~---~v~v~~~~g~~~~~~ad~vLvAiGR~P 272 (454)
T COG1249 227 -------------------------------GGVKILLNTKVTAVEKKDD---GVLVTLEDGEGGTIEADAVLVAIGRKP 272 (454)
T ss_pred -------------------------------CCeEEEccceEEEEEecCC---eEEEEEecCCCCEEEeeEEEEccCCcc
Confidence 8999999999999988763 3778888875 799999999999999
Q ss_pred Ccc-cccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcce
Q psy1545 276 NSN-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVI 354 (454)
Q Consensus 276 ~~~-~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~ 354 (454)
|++ +-++..|++++++|+|.||++++|++|||||+|||++.+ +++|.|.+||++||.||++.......+
T Consensus 273 n~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~~~~----------~Lah~A~~eg~iaa~~i~g~~~~~~d~ 342 (454)
T COG1249 273 NTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGP----------MLAHVAMAEGRIAAENIAGGKRTPIDY 342 (454)
T ss_pred CCCCCChhhcCceECCCCCEEeCCccccCCCCEEEeeccCCCc----------ccHhHHHHHHHHHHHHHhCCCCCcCcc
Confidence 998 446778999999999999977889999999999998865 489999999999999999832223335
Q ss_pred eccceeeeeeeeeecCeEEEEeecccCCcCCCCce--EEE----------eecCCccEEEEEE--ECCeEEEEEEEcCC-
Q psy1545 355 QDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE--ILL----------RVTRGEEYIKLVM--KDGRMQGAVLIGET- 419 (454)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~----------~~~~~~~~~k~~~--~~~~i~G~~~~g~~- 419 (454)
..+|+.+|++| ++++||+++.++....++ +.. ......||+|+++ ++++|+|+|++|++
T Consensus 343 ~~iP~~ift~P------eia~VGlte~ea~~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A 416 (454)
T COG1249 343 RLIPSVVFTDP------EIASVGLTEEEAKEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGA 416 (454)
T ss_pred cCCCEEEECCC------cceeeeCCHHHHHhcCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCH
Confidence 56899999988 899999999887644332 211 0123579999999 47999999999999
Q ss_pred -chHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 420 -EIEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 420 -~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
+.++.++.+|.++++.+++.+ ..++++++++
T Consensus 417 ~ElI~~~~~a~~~g~t~~~~~~-~i~~HPT~sE 448 (454)
T COG1249 417 SELINEIALAIEMGATAEDLAL-TIHAHPTLSE 448 (454)
T ss_pred HHHHHHHHHHHHCCCcHHHHhc-CCCCCCChHH
Confidence 468999999999999999843 4444444443
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-53 Score=420.37 Aligned_cols=391 Identities=18% Similarity=0.289 Sum_probs=299.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc-cccccccc-cccc-chhhhHHHHH-hc-CcEEE-cceE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT-KTVPVTKL-LSDI-TVEETDANKF-EG-LCTVI-VDTV 76 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~-~~~~~~~~-~~~~-~~~~~~~~~~-~~-~i~~~-~~~v 76 (454)
++|||||||+||++||..|++++++.+|+|||+++.+.+.. ..+.+... .... +......+.+ .+ +++++ .++|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 48999999999999999999987889999999998765432 12222111 1111 1111111233 34 89986 5799
Q ss_pred EEEeCcccEEEeccC---c--EEEecEEEEecCCCCCCCCCC-CceeeeeccchHHHHHHHhh--cCCeEEEEcCchhHH
Q psy1545 77 AAIDPRVNCVITEKQ---N--RIKYKTLCICTGASPRKIWYS-PHVITIRDTDSVAVLQEKLK--SAKKIVVIGNGGIAT 148 (454)
Q Consensus 77 ~~i~~~~~~v~~~~g---~--~i~~d~lviAtG~~p~~~~~~-~~~~~~~~~~~~~~l~~~~~--~~~~vvVvG~G~~g~ 148 (454)
+.+|++++.|.+.++ + ++.||+||||||++|+.|+++ ++++.+.+..++..+.+.+. .+++++|||+|++|+
T Consensus 82 ~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~ 161 (438)
T PRK13512 82 IAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISL 161 (438)
T ss_pred EEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHH
Confidence 999999998887643 2 478999999999999988877 67777777778877776543 378999999999999
Q ss_pred HHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCc
Q psy1545 149 ELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSS 226 (454)
Q Consensus 149 e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 226 (454)
|+|..|+ |.+|+++++.+++++. +++++...+.+.+.+
T Consensus 162 E~A~~l~~~g~~Vtli~~~~~l~~~-~d~~~~~~l~~~l~~--------------------------------------- 201 (438)
T PRK13512 162 EVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDK--------------------------------------- 201 (438)
T ss_pred HHHHHHHhCCCcEEEEecccccchh-cCHHHHHHHHHHHHh---------------------------------------
Confidence 9999986 9999999999988764 688887777777754
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCc
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISN 306 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~ 306 (454)
.||++++++++++++.. .+.+++|+++++|.|++|+|++|+.+ +++..++.++++|+|.||+++||++||
T Consensus 202 --~gI~i~~~~~v~~i~~~-------~v~~~~g~~~~~D~vl~a~G~~pn~~-~l~~~gl~~~~~G~i~Vd~~~~t~~~~ 271 (438)
T PRK13512 202 --REIPYRLNEEIDAINGN-------EVTFKSGKVEHYDMIIEGVGTHPNSK-FIESSNIKLDDKGFIPVNDKFETNVPN 271 (438)
T ss_pred --cCCEEEECCeEEEEeCC-------EEEECCCCEEEeCEEEECcCCCcChH-HHHhcCcccCCCCcEEECCCcccCCCC
Confidence 89999999999999642 36677888899999999999999998 888888888888999999999999999
Q ss_pred eeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC
Q psy1545 307 VYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN 386 (454)
Q Consensus 307 Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ 386 (454)
|||+|||+.......+.+...++++.|.+||+++|+||++... ..++.....+...+++++++++|+++.++...
T Consensus 272 IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~-----~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~ 346 (438)
T PRK13512 272 IYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDT-----IEFKGFLGNNIVKFFDYTFASVGVKPNELKQF 346 (438)
T ss_pred EEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCCc-----cccCCcccceEEEEcCceEEeecCCHHHHccC
Confidence 9999999975433333333457888999999999999987421 11111112223456777999999999877644
Q ss_pred CceEEEe---------ecCCccEEEEEE--ECCeEEEEEEEcCCc---hHHHHHHHHhcCCCcchhhhh--ccCCCCC
Q psy1545 387 DYEILLR---------VTRGEEYIKLVM--KDGRMQGAVLIGETE---IEEMCENLILNQLDLTDIADD--LLNPNID 448 (454)
Q Consensus 387 ~~~~~~~---------~~~~~~~~k~~~--~~~~i~G~~~~g~~~---~~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 448 (454)
++..... .....+|+|+++ ++++|+|+|++|++. .++.++.+|++++|++++.+. .+||+++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~ 424 (438)
T PRK13512 347 DYKMVEVTQGAHANYYPGNSPLHLRVYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYS 424 (438)
T ss_pred CcEEEEEecCCcCCCcCCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCC
Confidence 4332211 123468999999 479999999999862 578999999999999999764 3576655
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-52 Score=417.50 Aligned_cols=377 Identities=20% Similarity=0.262 Sum_probs=288.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc---------------------c--ccch-
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL---------------------S--DITV- 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~---------------------~--~~~~- 57 (454)
+|||+||||||||++||..++++ |++|+|+|+....+.|.+..+.+... . ..++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~--G~~V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 79 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH--GAKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWK 79 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHH
Confidence 68999999999999999999998 99999999987666666553332210 0 0111
Q ss_pred -------------hhhHHHHHhc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCCCceeeeeccc
Q psy1545 58 -------------EETDANKFEG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSPHVITIRDTD 123 (454)
Q Consensus 58 -------------~~~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~~~~~~~~~~~ 123 (454)
.......+.+ +++++.+++..++++...+. .+|+.++||+||||||++|..|++++.-. ..+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~~p~i~G~~~-~~~~~ 157 (446)
T TIGR01424 80 KLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQKPNLPGHEL-GITSN 157 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCCCCCCCCccc-eechH
Confidence 0111122334 89999999999998765554 35678999999999999999888872111 22444
Q ss_pred hHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcc
Q psy1545 124 SVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMR 201 (454)
Q Consensus 124 ~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~ 201 (454)
++..+.+ .+++++|||+|++|+|+|..+. |.+|+++++++.+++. +++++...+.+.+.+
T Consensus 158 ~~~~l~~---~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~-------------- 219 (446)
T TIGR01424 158 EAFHLPT---LPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDMRALLARNMEG-------------- 219 (446)
T ss_pred Hhhcccc---cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHHHHHHHHHHHH--------------
Confidence 4544432 3899999999999999999886 9999999999988875 677777777766654
Q ss_pred cccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccc-
Q psy1545 202 YNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQ- 280 (454)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~- 280 (454)
.||++++++.+.+++..++ ...+.+.+|+++++|.|++|+|++|+.+ .
T Consensus 220 ---------------------------~gV~i~~~~~v~~i~~~~~---~~~v~~~~g~~i~~D~viva~G~~pn~~-~l 268 (446)
T TIGR01424 220 ---------------------------RGIRIHPQTSLTSITKTDD---GLKVTLSHGEEIVADVVLFATGRSPNTK-GL 268 (446)
T ss_pred ---------------------------CCCEEEeCCEEEEEEEcCC---eEEEEEcCCcEeecCEEEEeeCCCcCCC-cC
Confidence 8999999999999986542 3566777888899999999999999987 4
Q ss_pred -cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccce
Q psy1545 281 -VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSF 359 (454)
Q Consensus 281 -~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~ 359 (454)
++..+++++++|+|.||+++||++|||||+|||++. .++++.|.+||++||+||++.......+..+|.
T Consensus 269 ~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~----------~~l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~ 338 (446)
T TIGR01424 269 GLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTDR----------INLTPVAIMEATCFANTEFGNNPTKFDHDLIAT 338 (446)
T ss_pred CccccCeEECCCCcEEeCCCCccCCCCEEEeeccCCC----------ccchhHHHHHHHHHHHHHhcCCCCccCcCCCCe
Confidence 466778888889999999999999999999999864 368889999999999999974321122234566
Q ss_pred eeeeeeeeecCeEEEEeecccCCcCCC---CceEEEe----------ecCCccEEEEEE--ECCeEEEEEEEcCCc--hH
Q psy1545 360 EMFTHMTKFFGYKVILLGLFNGQTLEN---DYEILLR----------VTRGEEYIKLVM--KDGRMQGAVLIGETE--IE 422 (454)
Q Consensus 360 ~~~~~~~~~~~~~~~~vG~~~~~~~~~---~~~~~~~----------~~~~~~~~k~~~--~~~~i~G~~~~g~~~--~~ 422 (454)
.+|+.| +++++|+++.++... ++.+... ....++|+|+++ ++++|+|+|++|++. .+
T Consensus 339 ~if~~p------~ia~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i 412 (446)
T TIGR01424 339 AVFSQP------PLGTVGLTEEEAREKFTGDILVYRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEII 412 (446)
T ss_pred EEeCCc------hhEEEECCHHHHHhhcCCCEEEEEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHH
Confidence 666655 899999998776533 2221111 123468999999 489999999999873 57
Q ss_pred HHHHHHHhcCCCcchhhhhcc-CCCC
Q psy1545 423 EMCENLILNQLDLTDIADDLL-NPNI 447 (454)
Q Consensus 423 ~~~~~~i~~~~~~~~~~~~~~-~~~~ 447 (454)
+.++.+|++++|++|+.+.++ ||++
T Consensus 413 ~~~~~ai~~~~t~~~l~~~~~~hPt~ 438 (446)
T TIGR01424 413 QGIAIALKMGATKADFDSTVGIHPSS 438 (446)
T ss_pred HHHHHHHHcCCCHHHHhhccccCCCh
Confidence 899999999999999977553 5554
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-52 Score=419.93 Aligned_cols=380 Identities=19% Similarity=0.252 Sum_probs=291.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECC----------CCccccccccccccccc-------------------
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTP----------SGIVKAVTKTVPVTKLL------------------- 52 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~----------~~~~~~~~~~~~~~~~~------------------- 52 (454)
+||++||||||||+.||..++++ |.+|+|||+ +...+.|.++.+.+...
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~--G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 48999999999999999999998 999999996 34555565543322110
Q ss_pred -----cccchhh----------h---HH-HHHhc-CcEEEcceEEEEeCcccEEEeccCc--EEEecEEEEecCCCCCCC
Q psy1545 53 -----SDITVEE----------T---DA-NKFEG-LCTVIVDTVAAIDPRVNCVITEKQN--RIKYKTLCICTGASPRKI 110 (454)
Q Consensus 53 -----~~~~~~~----------~---~~-~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lviAtG~~p~~~ 110 (454)
..+++.. + .. ..+.. +++++.+++.+++++...|.+.+|+ .+.||+||||||++|+.|
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~p 182 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRP 182 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCCC
Confidence 0111111 0 01 11233 8999999999999998888877775 588999999999999988
Q ss_pred CCCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhcc
Q psy1545 111 WYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKT 188 (454)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~ 188 (454)
++++.- ...+.+++..+.. .+++++|||+|++|+|+|..+. |.+|+++++.+++++. +++++...+.+.+.+
T Consensus 183 ~ipG~~-~~~~~~~~~~l~~---~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~- 256 (499)
T PLN02507 183 NIPGKE-LAITSDEALSLEE---LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEMRAVVARNLEG- 256 (499)
T ss_pred CCCCcc-ceechHHhhhhhh---cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHHHHHHHHHHHh-
Confidence 887211 1235566665544 3899999999999999999986 9999999999988875 788888888777755
Q ss_pred CCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEE
Q psy1545 189 NTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVV 268 (454)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi 268 (454)
.||++++++.+++++..++ .+.+.+.+|+++++|.|+
T Consensus 257 ----------------------------------------~GI~i~~~~~V~~i~~~~~---~~~v~~~~g~~i~~D~vl 293 (499)
T PLN02507 257 ----------------------------------------RGINLHPRTNLTQLTKTEG---GIKVITDHGEEFVADVVL 293 (499)
T ss_pred ----------------------------------------CCCEEEeCCEEEEEEEeCC---eEEEEECCCcEEEcCEEE
Confidence 8999999999999986542 356777788889999999
Q ss_pred EeeccCcCcccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 269 SAIGVVPNSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 269 ~a~G~~p~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
+++|++|+.+ + ++..+++++++|+|.||+++||+.|||||+|||++.. .+++.|.+||++||+||++
T Consensus 294 ~a~G~~pn~~-~l~l~~~gl~~~~~G~I~Vd~~~~Ts~p~IyAiGDv~~~~----------~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 294 FATGRAPNTK-RLNLEAVGVELDKAGAVKVDEYSRTNIPSIWAIGDVTNRI----------NLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred EeecCCCCCC-CCCchhhCcEECCCCcEecCCCCcCCCCCEEEeeEcCCCC----------ccHHHHHHHHHHHHHHHcC
Confidence 9999999998 5 4567888888899999999999999999999998743 5788999999999999987
Q ss_pred CCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC---CceEEE---e-------ecCCccEEEEEE--ECCeEE
Q psy1545 347 AVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN---DYEILL---R-------VTRGEEYIKLVM--KDGRMQ 411 (454)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~---~~~~~~---~-------~~~~~~~~k~~~--~~~~i~ 411 (454)
.....+.+...|..+|+.+ +++.+|+++.++... .+.+.. . .....+|+|+++ ++++|+
T Consensus 363 ~~~~~~~~~~~p~~if~~p------~ia~vGlte~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~il 436 (499)
T PLN02507 363 GQPTKPDYENVACAVFCIP------PLSVVGLSEEEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVL 436 (499)
T ss_pred CCCCcCCCCCCCeEEECCC------ccEEEeCCHHHHHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEE
Confidence 4322222233456666655 899999998766532 122111 0 112457999999 489999
Q ss_pred EEEEEcCCc--hHHHHHHHHhcCCCcchhhhhccCCCCCCC
Q psy1545 412 GAVLIGETE--IEEMCENLILNQLDLTDIADDLLNPNIDID 450 (454)
Q Consensus 412 G~~~~g~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 450 (454)
|+|++|++. .++.++.+|++++|++|+.+.+ +|++++.
T Consensus 437 G~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~-~~hPt~~ 476 (499)
T PLN02507 437 GASMCGPDAPEIMQGIAVALKCGATKAQFDSTV-GIHPSAA 476 (499)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcC-cCCCChH
Confidence 999999873 5789999999999999997755 3444443
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=411.21 Aligned_cols=376 Identities=20% Similarity=0.275 Sum_probs=286.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-------------------c-----ccch
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-------------------S-----DITV 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-------------------~-----~~~~ 57 (454)
+|||+||||||||++||..|+++ |.+|+|||++...+.|.++.+.+... . ..++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~--G~~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 79 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEH--GAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNW 79 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC--CCcEEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCH
Confidence 58999999999999999999998 99999999987777676654433210 0 0111
Q ss_pred hh----------h----HHHHHhc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCC-CCCCceeeeec
Q psy1545 58 EE----------T----DANKFEG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKI-WYSPHVITIRD 121 (454)
Q Consensus 58 ~~----------~----~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~-~~~~~~~~~~~ 121 (454)
.. . ....+.+ +++++.+++...+. ++|.+ +++.+.||+||||||++|+.| +++.... ..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~--~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~~-~~~ 155 (450)
T TIGR01421 80 PELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKD--GTVEV-NGRDYTAPHILIATGGKPSFPENIPGAEL-GTD 155 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCce-eEc
Confidence 11 1 1122333 89999888877654 45655 566899999999999999988 6762211 234
Q ss_pred cchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhh
Q psy1545 122 TDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKR 199 (454)
Q Consensus 122 ~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~ 199 (454)
.+++..+.. .+++++|||||++|+|+|..|+ |.+||++++++++++. +|+++.+.+.+.+.+
T Consensus 156 ~~~~~~~~~---~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~------------ 219 (450)
T TIGR01421 156 SDGFFALEE---LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-FDSMISETITEEYEK------------ 219 (450)
T ss_pred HHHhhCccc---cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-cCHHHHHHHHHHHHH------------
Confidence 455544433 3899999999999999999987 9999999999998874 788888888887755
Q ss_pred cccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC-cEEecCEEEEeeccCcCcc
Q psy1545 200 MRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG-HTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 200 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g-~~~~~D~vi~a~G~~p~~~ 278 (454)
.||++++++.+++++.+.+ ..+.+.+++| +++++|.|++|+|++|+++
T Consensus 220 -----------------------------~gI~i~~~~~v~~i~~~~~--~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 220 -----------------------------EGINVHKLSKPVKVEKTVE--GKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred -----------------------------cCCEEEcCCEEEEEEEeCC--ceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 8999999999999986532 1356777778 6799999999999999997
Q ss_pred cc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCC-Cccee
Q psy1545 279 IQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKN-EPVIQ 355 (454)
Q Consensus 279 ~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~ 355 (454)
+ ++..+++++++|+|.||+++||++|||||+|||++.+ .+++.|..||+.+|+||++.... ...+.
T Consensus 269 -~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~ 337 (450)
T TIGR01421 269 -GLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVVGKV----------ELTPVAIAAGRKLSERLFNGKTDDKLDYN 337 (450)
T ss_pred -cCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecCCCc----------ccHHHHHHHHHHHHHHHhcCCCCCccCcc
Confidence 5 4667888888999999999999999999999999743 57889999999999999864211 11223
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCC-C---ceEEEe----------ecCCccEEEEEE--ECCeEEEEEEEcCC
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLEN-D---YEILLR----------VTRGEEYIKLVM--KDGRMQGAVLIGET 419 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~-~---~~~~~~----------~~~~~~~~k~~~--~~~~i~G~~~~g~~ 419 (454)
..|..+|+.| +++++|+++.++... + +..... .....+|+|+++ ++++|||+|++|+.
T Consensus 338 ~~p~~~f~~p------~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~ 411 (450)
T TIGR01421 338 NVPTVVFSHP------PIGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDG 411 (450)
T ss_pred cCCeEEeCCC------ceEEEeCCHHHHHhhcCCCCEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCC
Confidence 4555566555 899999999876432 1 221111 123568999999 48999999999977
Q ss_pred --chHHHHHHHHhcCCCcchhhhhc-cCCCC
Q psy1545 420 --EIEEMCENLILNQLDLTDIADDL-LNPNI 447 (454)
Q Consensus 420 --~~~~~~~~~i~~~~~~~~~~~~~-~~~~~ 447 (454)
+.++.++.+|++++|++|+.+.. .||++
T Consensus 412 a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~ 442 (450)
T TIGR01421 412 VDEMLQGFAVAIKMGATKADFDNTVAIHPTS 442 (450)
T ss_pred HHHHHHHHHHHHHCCCCHHHHhhcccCCCCh
Confidence 35789999999999999997765 35554
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-52 Score=415.20 Aligned_cols=378 Identities=20% Similarity=0.254 Sum_probs=286.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc--------------------c----cccch
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL--------------------L----SDITV 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~--------------------~----~~~~~ 57 (454)
+||++||||||||++||..|+++ |.+|+|||++...+.|.++.+.+.. + ...++
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~--G~~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMY--GAKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDW 81 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCH
Confidence 68999999999999999999998 9999999998666656554332211 0 00111
Q ss_pred h--------------hhHHHHHhc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCCCceeeeecc
Q psy1545 58 E--------------ETDANKFEG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSPHVITIRDT 122 (454)
Q Consensus 58 ~--------------~~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~~~~~~~~~~ 122 (454)
. ......+.+ +++++.++++++++. +|.+ +++++.||+||||||++|+.|++++. ..+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~--~v~~-~g~~~~~d~lViATGs~p~~p~i~g~-~~~~~~ 157 (450)
T PRK06116 82 AKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAH--TVEV-NGERYTADHILIATGGRPSIPDIPGA-EYGITS 157 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCC--EEEE-CCEEEEeCEEEEecCCCCCCCCCCCc-ceeEch
Confidence 1 001112333 899999999998764 5666 67789999999999999999888721 112334
Q ss_pred chHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhc
Q psy1545 123 DSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRM 200 (454)
Q Consensus 123 ~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~ 200 (454)
.++..+.. .+++++|||+|.+|+|+|..+. |.+|+++++++++++. +++++...+.+.+.+
T Consensus 158 ~~~~~~~~---~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~L~~------------- 220 (450)
T PRK06116 158 DGFFALEE---LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG-FDPDIRETLVEEMEK------------- 220 (450)
T ss_pred hHhhCccc---cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc-cCHHHHHHHHHHHHH-------------
Confidence 44443332 3799999999999999999986 9999999999988764 677777777777654
Q ss_pred ccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccc
Q psy1545 201 RYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQ 280 (454)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~ 280 (454)
.||++++++++.+++.+++ ..+.+.+.+|+++++|.|++|+|++|+.+ .
T Consensus 221 ----------------------------~GV~i~~~~~V~~i~~~~~--g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~-~ 269 (450)
T PRK06116 221 ----------------------------KGIRLHTNAVPKAVEKNAD--GSLTLTLEDGETLTVDCLIWAIGREPNTD-G 269 (450)
T ss_pred ----------------------------CCcEEECCCEEEEEEEcCC--ceEEEEEcCCcEEEeCEEEEeeCCCcCCC-C
Confidence 8999999999999987542 23567788888999999999999999997 4
Q ss_pred --cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC-CCcceecc
Q psy1545 281 --VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK-NEPVIQDF 357 (454)
Q Consensus 281 --~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~~ 357 (454)
++..+++++++|+|.||+++||++|||||+|||+.. +++++.|..||+.||+||++... ....+..+
T Consensus 270 l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~----------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~ 339 (450)
T PRK06116 270 LGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGR----------VELTPVAIAAGRRLSERLFNNKPDEKLDYSNI 339 (450)
T ss_pred CCchhcCceECCCCcEecCCCCCcCCCCEEEEeecCCC----------cCcHHHHHHHHHHHHHHHhCCCCCCcCCcCCC
Confidence 456688888899999999999999999999999863 35788999999999999997432 11222345
Q ss_pred ceeeeeeeeeecCeEEEEeecccCCcCCCC----ceEEE---e-------ecCCccEEEEEE--ECCeEEEEEEEcCC--
Q psy1545 358 SFEMFTHMTKFFGYKVILLGLFNGQTLEND----YEILL---R-------VTRGEEYIKLVM--KDGRMQGAVLIGET-- 419 (454)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~----~~~~~---~-------~~~~~~~~k~~~--~~~~i~G~~~~g~~-- 419 (454)
|..+|+.| +++++|+++.++...+ +.+.. . .....+|+|+++ ++++|+|+|++|+.
T Consensus 340 p~~if~~p------~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~ 413 (450)
T PRK06116 340 PTVVFSHP------PIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGAD 413 (450)
T ss_pred CeEEeCCC------ccEEeeCCHHHHHHhCCCCcEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHH
Confidence 66666655 8999999997765332 22111 0 123578999999 47999999999977
Q ss_pred chHHHHHHHHhcCCCcchhhhhccCCCCCCC
Q psy1545 420 EIEEMCENLILNQLDLTDIADDLLNPNIDID 450 (454)
Q Consensus 420 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 450 (454)
+.++.++.+|++++|++|+.+.+ +|++++.
T Consensus 414 e~i~~~~~ai~~~~t~~~l~~~~-~~hPt~~ 443 (450)
T PRK06116 414 EMIQGFAVAIKMGATKADFDNTV-AIHPTAA 443 (450)
T ss_pred HHHHHHHHHHHCCCCHHHHhccc-ccCCChH
Confidence 35789999999999999997764 3444443
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=411.42 Aligned_cols=393 Identities=21% Similarity=0.260 Sum_probs=298.9
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc-cccccccc-ccc-cchhhhHHHHHhc-CcEEE-cceEEE
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT-KTVPVTKL-LSD-ITVEETDANKFEG-LCTVI-VDTVAA 78 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~-~~~~~~~~-~~~-~~~~~~~~~~~~~-~i~~~-~~~v~~ 78 (454)
+|||||||+||+++|..|++++++.+|+|||+++.+.+.. ..+.+... ... .+......+.+.+ +++++ ..+|+.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~ 81 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVK 81 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEE
Confidence 7999999999999999999987778999999998765321 11111111 111 1122223344555 99986 569999
Q ss_pred EeCcccEEEecc---CcEEE--ecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhh--cCCeEEEEcCchhH
Q psy1545 79 IDPRVNCVITEK---QNRIK--YKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLK--SAKKIVVIGNGGIA 147 (454)
Q Consensus 79 i~~~~~~v~~~~---g~~i~--~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~--~~~~vvVvG~G~~g 147 (454)
++++.+.|.+.+ +..+. ||+||||||++|+.|+++ ++++++.+..+..++++.+. .+++++|+|+|++|
T Consensus 82 id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g 161 (444)
T PRK09564 82 VDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIG 161 (444)
T ss_pred EECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHH
Confidence 999888887754 55666 999999999999888876 45777777777777776654 37899999999999
Q ss_pred HHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccC
Q psy1545 148 TELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGS 225 (454)
Q Consensus 148 ~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 225 (454)
+|+|..+. |.+|+++++.+++++..+++++.+.+.+.+.+
T Consensus 162 ~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~-------------------------------------- 203 (444)
T PRK09564 162 LEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRE-------------------------------------- 203 (444)
T ss_pred HHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHH--------------------------------------
Confidence 99999886 99999999999888755678777777777754
Q ss_pred ccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccC
Q psy1545 226 SRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSIS 305 (454)
Q Consensus 226 l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~ 305 (454)
.||++++++.+.++..++. ...+.++ +.++++|.+++|+|++|+.+ +++..|++++++|+|.||+++||+.|
T Consensus 204 ---~gI~v~~~~~v~~i~~~~~---~~~v~~~-~~~i~~d~vi~a~G~~p~~~-~l~~~gl~~~~~g~i~vd~~~~t~~~ 275 (444)
T PRK09564 204 ---NGVELHLNEFVKSLIGEDK---VEGVVTD-KGEYEADVVIVATGVKPNTE-FLEDTGLKTLKNGAIIVDEYGETSIE 275 (444)
T ss_pred ---CCCEEEcCCEEEEEecCCc---EEEEEeC-CCEEEcCEEEECcCCCcCHH-HHHhcCccccCCCCEEECCCcccCCC
Confidence 8999999999999975432 3334444 45799999999999999998 88888888888899999999999999
Q ss_pred ceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCC
Q psy1545 306 NVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLE 385 (454)
Q Consensus 306 ~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~ 385 (454)
||||+|||+..+....+.+..+++++.|..||+++|+||++... .++....+....+++++++++|+++.++..
T Consensus 276 ~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~------~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~ 349 (444)
T PRK09564 276 NIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHV------SFKGTLGSACIKVLDLEAARTGLTEEEAKK 349 (444)
T ss_pred CEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCC------CCCCcccceEEEECCEEEEEecCCHHHHHH
Confidence 99999999986443333334467899999999999999997421 122222222345678899999999887653
Q ss_pred CCce--EEE-e--------ecCCccEEEEEE--ECCeEEEEEEEcCC---chHHHHHHHHhcCCCcchhhhh--ccCCCC
Q psy1545 386 NDYE--ILL-R--------VTRGEEYIKLVM--KDGRMQGAVLIGET---EIEEMCENLILNQLDLTDIADD--LLNPNI 447 (454)
Q Consensus 386 ~~~~--~~~-~--------~~~~~~~~k~~~--~~~~i~G~~~~g~~---~~~~~~~~~i~~~~~~~~~~~~--~~~~~~ 447 (454)
.+++ ... . .....+|+|+++ ++++|+|+|++|+. ..++.+..+|++++|++++.+. .++|++
T Consensus 350 ~g~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~ 429 (444)
T PRK09564 350 LGIDYKTVFIKDKNHTNYYPGQEDLYVKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPF 429 (444)
T ss_pred CCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCC
Confidence 3322 111 1 112357999999 58999999999986 3578999999999999998544 456776
Q ss_pred C
Q psy1545 448 D 448 (454)
Q Consensus 448 ~ 448 (454)
+
T Consensus 430 ~ 430 (444)
T PRK09564 430 A 430 (444)
T ss_pred C
Confidence 5
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=412.51 Aligned_cols=380 Identities=17% Similarity=0.202 Sum_probs=284.1
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC--ccccccccccccccc------cccchh------h-------
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG--IVKAVTKTVPVTKLL------SDITVE------E------- 59 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~--~~~~~~~~~~~~~~~------~~~~~~------~------- 59 (454)
.+|||+|||||+||++||..|++. +.+|+|||+++ ..+.|.+..+.+... ...++. .
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~--g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKA--GWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLR 79 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHC--CCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 158999999999999999999998 89999999975 344454444332211 011111 0
Q ss_pred -hHHHHHhc--CcEEEcceEEEEeCcccEEEeccCc-EEEecEEEEecCCCCCCCCCCC--ceeeeeccchHHHHHHHhh
Q psy1545 60 -TDANKFEG--LCTVIVDTVAAIDPRVNCVITEKQN-RIKYKTLCICTGASPRKIWYSP--HVITIRDTDSVAVLQEKLK 133 (454)
Q Consensus 60 -~~~~~~~~--~i~~~~~~v~~i~~~~~~v~~~~g~-~i~~d~lviAtG~~p~~~~~~~--~~~~~~~~~~~~~l~~~~~ 133 (454)
.....+.+ +++++.+++.+++++...|.+.++. ++.||+||||||++|+.|++++ ....+.+..++..+. .
T Consensus 80 ~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~~v~~~~~~~~~~---~ 156 (441)
T PRK08010 80 NKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLK---E 156 (441)
T ss_pred HhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCCCEEChhHhhccc---c
Confidence 01112222 8999999999999887777776664 6999999999999999988872 212233444444332 2
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCC
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPS 211 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (454)
.+++++|||+|++|+|+|..+. |.+|+++++++++++. +++++...+.+.+.+
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~------------------------ 211 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRD------------------------ 211 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHHHHHHHHHHHHh------------------------
Confidence 4889999999999999999986 9999999999998875 577777777666654
Q ss_pred CCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCccccc--CCCCceec
Q psy1545 212 LGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQV--HGTPFELA 289 (454)
Q Consensus 212 l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~--~~~~l~~~ 289 (454)
.||++++++.+.+++.+++ .+.+..+++ ++++|.|++|+|++|+.+ ++ ...+++++
T Consensus 212 -----------------~gV~v~~~~~v~~i~~~~~---~v~v~~~~g-~i~~D~vl~a~G~~pn~~-~l~~~~~gl~~~ 269 (441)
T PRK08010 212 -----------------QGVDIILNAHVERISHHEN---QVQVHSEHA-QLAVDALLIASGRQPATA-SLHPENAGIAVN 269 (441)
T ss_pred -----------------CCCEEEeCCEEEEEEEcCC---EEEEEEcCC-eEEeCEEEEeecCCcCCC-CcCchhcCcEEC
Confidence 8999999999999987542 345555555 589999999999999997 53 45678888
Q ss_pred CCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCC-Ccceeccceeeeeeeeee
Q psy1545 290 PDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKN-EPVIQDFSFEMFTHMTKF 368 (454)
Q Consensus 290 ~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~~~~~~~~~~~~~ 368 (454)
++|+|.||+++||+.|||||+|||++.+ ++.+.|..||++++.||++.... .......|..+|+
T Consensus 270 ~~G~i~vd~~~~Ts~~~IyA~GD~~~~~----------~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~----- 334 (441)
T PRK08010 270 ERGAIVVDKYLHTTADNIWAMGDVTGGL----------QFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFM----- 334 (441)
T ss_pred CCCcEEECCCcccCCCCEEEeeecCCCc----------cchhHHHHHHHHHHHHHcCCCCcccCccCCCCEEEEC-----
Confidence 8899999999999999999999999753 67889999999999999874211 1112234444444
Q ss_pred cCeEEEEeecccCCcCCCCc--eEEEe----------ecCCccEEEEEE--ECCeEEEEEEEcCCc--hHHHHHHHHhcC
Q psy1545 369 FGYKVILLGLFNGQTLENDY--EILLR----------VTRGEEYIKLVM--KDGRMQGAVLIGETE--IEEMCENLILNQ 432 (454)
Q Consensus 369 ~~~~~~~vG~~~~~~~~~~~--~~~~~----------~~~~~~~~k~~~--~~~~i~G~~~~g~~~--~~~~~~~~i~~~ 432 (454)
+++++++|+++.++...++ .+... .....+|+|+++ ++++|+|+|++|+.. .++.++.+|+++
T Consensus 335 -~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 413 (441)
T PRK08010 335 -TPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAG 413 (441)
T ss_pred -CCCceeeeCCHHHHHHcCCCeEEEEEecCcChhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 5599999999987754332 22110 113467999999 489999999999874 578999999999
Q ss_pred CCcchhhhhc-cCCCCC
Q psy1545 433 LDLTDIADDL-LNPNID 448 (454)
Q Consensus 433 ~~~~~~~~~~-~~~~~~ 448 (454)
+|++++.+.+ .||+++
T Consensus 414 ~t~~~l~~~~~~hPt~~ 430 (441)
T PRK08010 414 LPYSILRDQIFTHPSMS 430 (441)
T ss_pred CCHHHHhhccccCCchH
Confidence 9999997544 466543
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-51 Score=408.51 Aligned_cols=375 Identities=20% Similarity=0.290 Sum_probs=287.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc---------------------c--ccchh
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL---------------------S--DITVE 58 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~---------------------~--~~~~~ 58 (454)
+||++|||||++|.+||.. .. |.+|+|||++...+.|.++.+.+... . ..++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~--G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 76 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FA--DKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWP 76 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HC--CCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHH
Confidence 4899999999999999865 34 89999999998888888875433210 0 11111
Q ss_pred ----------hhH----HHH--Hhc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCCC-ceeeee
Q psy1545 59 ----------ETD----ANK--FEG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSP-HVITIR 120 (454)
Q Consensus 59 ----------~~~----~~~--~~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~~-~~~~~~ 120 (454)
.+. ... +.. +++++.+++++++ .++|.+.+|+.++||+||||||++|+.|+++. ....++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~--~~~V~v~~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~ 154 (451)
T PRK07846 77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIG--PKTLRTGDGEEITADQVVIAAGSRPVIPPVIADSGVRYH 154 (451)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEec--CCEEEECCCCEEEeCEEEEcCCCCCCCCCCCCcCCccEE
Confidence 011 111 233 8999999999885 45677777778999999999999999998872 223456
Q ss_pred ccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhh
Q psy1545 121 DTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFK 198 (454)
Q Consensus 121 ~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~ 198 (454)
+.+++..+.. .+++++|||+|++|+|+|..++ |.+|+++++++++++. +++++...+.+.+ +
T Consensus 155 ~~~~~~~l~~---~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~l~-~----------- 218 (451)
T PRK07846 155 TSDTIMRLPE---LPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-LDDDISERFTELA-S----------- 218 (451)
T ss_pred chHHHhhhhh---cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHH-h-----------
Confidence 7777766654 3899999999999999999987 9999999999998864 6777666554432 1
Q ss_pred hcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 199 RMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 199 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
.||++++++.+++++..++ .+.+.+.+|+++++|.|++|+|++|+.+
T Consensus 219 ------------------------------~~v~i~~~~~v~~i~~~~~---~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 265 (451)
T PRK07846 219 ------------------------------KRWDVRLGRNVVGVSQDGS---GVTLRLDDGSTVEADVLLVATGRVPNGD 265 (451)
T ss_pred ------------------------------cCeEEEeCCEEEEEEEcCC---EEEEEECCCcEeecCEEEEEECCccCcc
Confidence 5799999999999986542 4567778888999999999999999998
Q ss_pred ccc--CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCC-Cccee
Q psy1545 279 IQV--HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKN-EPVIQ 355 (454)
Q Consensus 279 ~~~--~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~ 355 (454)
++ +..+++++++|+|.||+++||++|||||+|||+..+ ++.+.|.+||+++|+||++.... ...+.
T Consensus 266 -~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~~~~~~~ 334 (451)
T PRK07846 266 -LLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPY----------QLKHVANHEARVVQHNLLHPDDLIASDHR 334 (451)
T ss_pred -ccCchhcCceECCCCcEeECCCcccCCCCEEEEeecCCCc----------cChhHHHHHHHHHHHHHcCCCCccccCCC
Confidence 65 456788888999999999999999999999999743 67889999999999999975211 11223
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEEe------------ecCCccEEEEEE--ECCeEEEEEEEcCCc-
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLR------------VTRGEEYIKLVM--KDGRMQGAVLIGETE- 420 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~------------~~~~~~~~k~~~--~~~~i~G~~~~g~~~- 420 (454)
..|..+|+.+ +++++|+++.+++..++++... .....+|+|+++ ++++|+|+|++|++.
T Consensus 335 ~~p~~if~~p------~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~ 408 (451)
T PRK07846 335 FVPAAVFTHP------QIASVGLTENEARAAGLDITVKVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQAS 408 (451)
T ss_pred CCCeEEECCC------CcEeEeCCHHHHHhcCCCEEEEEEecCcchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHH
Confidence 3555555544 8999999998775433321110 123468999999 479999999999873
Q ss_pred -hHHHHHHHHhcCCCcchhhhhc--cCCCCC
Q psy1545 421 -IEEMCENLILNQLDLTDIADDL--LNPNID 448 (454)
Q Consensus 421 -~~~~~~~~i~~~~~~~~~~~~~--~~~~~~ 448 (454)
.++.++.+|++++|++||.+.. .||+++
T Consensus 409 e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~ 439 (451)
T PRK07846 409 TLIQPLIQAMSFGLDAREMARGQYWIHPALP 439 (451)
T ss_pred HHHHHHHHHHHcCCCHHHHhhCCCccCCcHH
Confidence 5789999999999999998754 576654
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-51 Score=411.66 Aligned_cols=378 Identities=20% Similarity=0.241 Sum_probs=284.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC-ccccccccccccccc-----------------------cccch
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG-IVKAVTKTVPVTKLL-----------------------SDITV 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~-~~~~~~~~~~~~~~~-----------------------~~~~~ 57 (454)
+||++||||||||++||..|+++ |.+|+|||+.+ ..+.|.++.+.+... ...++
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~--G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 81 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADL--GLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDI 81 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCH
Confidence 59999999999999999999998 99999999874 555566554332210 00111
Q ss_pred hh------hH--------HHHHhc-CcEEEcceEEEEeCcccEEEeccC--cEEEecEEEEecCCCCCCCC-CCCceeee
Q psy1545 58 EE------TD--------ANKFEG-LCTVIVDTVAAIDPRVNCVITEKQ--NRIKYKTLCICTGASPRKIW-YSPHVITI 119 (454)
Q Consensus 58 ~~------~~--------~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lviAtG~~p~~~~-~~~~~~~~ 119 (454)
.. .. ...+.+ +++++.+++.+++++...|...+| .+++||+||||||++|+.+| ++.....+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~v 161 (471)
T PRK06467 82 DKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRI 161 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCCcE
Confidence 10 00 111233 899999999998876656665555 47999999999999997544 33221224
Q ss_pred eccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhh
Q psy1545 120 RDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIF 197 (454)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~ 197 (454)
.+.+++..+.+ .+++++|||+|++|+|+|..+. |.+||++++.+++++. +|+++...+.+.+.+
T Consensus 162 ~~~~~~~~~~~---~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~---------- 227 (471)
T PRK06467 162 WDSTDALELKE---VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFTKRIKK---------- 227 (471)
T ss_pred EChHHhhcccc---CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHHHHHhh----------
Confidence 45566665543 3799999999999999999986 9999999999999985 788888888777754
Q ss_pred hhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC----cEEecCEEEEeecc
Q psy1545 198 KRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG----HTHACDIVVSAIGV 273 (454)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g----~~~~~D~vi~a~G~ 273 (454)
. |++++++.+++++..++ .+.+.++++ +++++|.|++|+|+
T Consensus 228 -------------------------------~-v~i~~~~~v~~i~~~~~---~~~v~~~~~~~~~~~i~~D~vi~a~G~ 272 (471)
T PRK06467 228 -------------------------------Q-FNIMLETKVTAVEAKED---GIYVTMEGKKAPAEPQRYDAVLVAVGR 272 (471)
T ss_pred -------------------------------c-eEEEcCCEEEEEEEcCC---EEEEEEEeCCCcceEEEeCEEEEeecc
Confidence 6 99999999999986543 345555442 46999999999999
Q ss_pred CcCccccc--CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC
Q psy1545 274 VPNSNIQV--HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351 (454)
Q Consensus 274 ~p~~~~~~--~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 351 (454)
+|+.+ ++ ...+++++++|+|.||+++||+.|+|||+|||++.+ ++++.|..||+.||.||++... +
T Consensus 273 ~pn~~-~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~----------~la~~A~~eG~~aa~~i~g~~~-~ 340 (471)
T PRK06467 273 VPNGK-LLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQP----------MLAHKGVHEGHVAAEVIAGKKH-Y 340 (471)
T ss_pred cccCC-ccChhhcCceECCCCcEeeCCCcccCCCCEEEehhhcCCc----------ccHHHHHHHHHHHHHHHcCCCC-C
Confidence 99997 43 456788888999999999999999999999998643 5788999999999999997432 1
Q ss_pred cceeccceeeeeeeeeecCeEEEEeecccCCcCCCCce--EEE-e---------ecCCccEEEEEE--ECCeEEEEEEEc
Q psy1545 352 PVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE--ILL-R---------VTRGEEYIKLVM--KDGRMQGAVLIG 417 (454)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~-~---------~~~~~~~~k~~~--~~~~i~G~~~~g 417 (454)
..+...|..+| ++++++++|+++.++...+++ ... . .....+|+|+++ ++++|+|+|++|
T Consensus 341 ~~~~~~p~~~~------~~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg 414 (471)
T PRK06467 341 FDPKVIPSIAY------TEPEVAWVGLTEKEAKEEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVG 414 (471)
T ss_pred CCCCCCCeEEE------CCCceeEEECCHHHHHhcCCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEEC
Confidence 12223444444 455999999999877543332 111 0 123468999999 479999999999
Q ss_pred CCc--hHHHHHHHHhcCCCcchhhhhc-cCCCCC
Q psy1545 418 ETE--IEEMCENLILNQLDLTDIADDL-LNPNID 448 (454)
Q Consensus 418 ~~~--~~~~~~~~i~~~~~~~~~~~~~-~~~~~~ 448 (454)
++. .++.++.+|++++|++|+.+.+ .||+++
T Consensus 415 ~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~ 448 (471)
T PRK06467 415 TNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLH 448 (471)
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChH
Confidence 984 5788999999999999998774 366554
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-51 Score=411.58 Aligned_cols=378 Identities=20% Similarity=0.297 Sum_probs=289.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC-ccccccccccccccc-----------------------cccch
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG-IVKAVTKTVPVTKLL-----------------------SDITV 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~-~~~~~~~~~~~~~~~-----------------------~~~~~ 57 (454)
+|||+|||||+||++||..|++. |.+|+|||+.+ ..+.|.+..+.+... ...++
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~--G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKL--GKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITF 82 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhC--CCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCH
Confidence 58999999999999999999998 89999999964 444444433221100 00011
Q ss_pred h---h-----------hHHHHHhc-CcEEEcceEEEEeCcccEEEeccCc--EEEecEEEEecCCCCCCCCCC-Cceeee
Q psy1545 58 E---E-----------TDANKFEG-LCTVIVDTVAAIDPRVNCVITEKQN--RIKYKTLCICTGASPRKIWYS-PHVITI 119 (454)
Q Consensus 58 ~---~-----------~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lviAtG~~p~~~~~~-~~~~~~ 119 (454)
. . .....+.+ +++++.+++.+++.....|...+|+ .++||+||||||++|+.|+++ .....+
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~~v 162 (461)
T PRK05249 83 ADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRI 162 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCCeE
Confidence 0 0 01112334 8999999999998877677666664 799999999999999988765 122234
Q ss_pred eccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhh
Q psy1545 120 RDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIF 197 (454)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~ 197 (454)
.+.+++..+.. .+++++|||+|++|+|+|..++ |.+|+++++++++++. +|+++...+.+.+.+
T Consensus 163 ~~~~~~~~~~~---~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~---------- 228 (461)
T PRK05249 163 YDSDSILSLDH---LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-LDDEISDALSYHLRD---------- 228 (461)
T ss_pred EcHHHhhchhh---cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-CCHHHHHHHHHHHHH----------
Confidence 45555554443 4899999999999999999987 9999999999999884 788888888777754
Q ss_pred hhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 198 KRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
.||++++++.+++++..++ .+.+.+++|+++++|.|++|+|++|+.
T Consensus 229 -------------------------------~gI~v~~~~~v~~i~~~~~---~~~v~~~~g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 229 -------------------------------SGVTIRHNEEVEKVEGGDD---GVIVHLKSGKKIKADCLLYANGRTGNT 274 (461)
T ss_pred -------------------------------cCCEEEECCEEEEEEEeCC---eEEEEECCCCEEEeCEEEEeecCCccc
Confidence 8999999999999986542 355677788889999999999999999
Q ss_pred ccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCccee
Q psy1545 278 NIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQ 355 (454)
Q Consensus 278 ~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~ 355 (454)
+ + ++..+++++++|+|.||+++||+.|||||+|||++.+ ++++.|..||++||.||++... ...+.
T Consensus 275 ~-~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~-~~~~~ 342 (461)
T PRK05249 275 D-GLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFP----------SLASASMDQGRIAAQHAVGEAT-AHLIE 342 (461)
T ss_pred c-CCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeecCCCc----------ccHhHHHHHHHHHHHHHcCCCc-ccccC
Confidence 7 4 4566788888899999999999999999999998643 5788999999999999996432 22233
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCCC--ceEEE----------eecCCccEEEEEE--ECCeEEEEEEEcCC--
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLEND--YEILL----------RVTRGEEYIKLVM--KDGRMQGAVLIGET-- 419 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~--~~~~~----------~~~~~~~~~k~~~--~~~~i~G~~~~g~~-- 419 (454)
.+|..+|+.+ +++++|+++.++...+ +.+.. ......+|+|+++ ++++|+|+|++|+.
T Consensus 343 ~~p~~i~~~p------~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~ 416 (461)
T PRK05249 343 DIPTGIYTIP------EISSVGKTEQELTAAKVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGERAT 416 (461)
T ss_pred CCCeEEECCC------cceEecCCHHHHHHcCCCeEEEEEccccccceeecCCCCcEEEEEEECCCCEEEEEEEECCCHH
Confidence 4666777765 8999999987765332 22111 0123468999999 47999999999987
Q ss_pred chHHHHHHHHhcCCCcchhhhhcc-CCCC
Q psy1545 420 EIEEMCENLILNQLDLTDIADDLL-NPNI 447 (454)
Q Consensus 420 ~~~~~~~~~i~~~~~~~~~~~~~~-~~~~ 447 (454)
+.++.+..+|++++|++|+.+..+ ||++
T Consensus 417 e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~ 445 (461)
T PRK05249 417 EIIHIGQAIMEQKGTIEYFVNTTFNYPTM 445 (461)
T ss_pred HHHHHHHHHHHCCCCHHHHhcCccCCCCH
Confidence 357889999999999999966653 6654
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-51 Score=411.08 Aligned_cols=380 Identities=17% Similarity=0.243 Sum_probs=283.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc-------------------c-----cccch
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL-------------------L-----SDITV 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~-------------------~-----~~~~~ 57 (454)
+|||+||||||||++||..|+++ |++|+|||+....+.|.++.+.+.. + ...++
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~--G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGL--GMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDF 82 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhC--CCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCH
Confidence 58999999999999999999998 9999999998877777766543221 0 01111
Q ss_pred hh--------------hHHHHHhc--CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC-Cceeeee
Q psy1545 58 EE--------------TDANKFEG--LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS-PHVITIR 120 (454)
Q Consensus 58 ~~--------------~~~~~~~~--~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~-~~~~~~~ 120 (454)
.. .....+.+ +++++.++..+++. ++|.+ +++++.||+||||||++|+.|+++ .....+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~--~~v~v-~~~~~~~d~lViATGs~p~~p~i~G~~~~~~~ 159 (463)
T PRK06370 83 KAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESP--NTVRV-GGETLRAKRIFINTGARAAIPPIPGLDEVGYL 159 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccC--CEEEE-CcEEEEeCEEEEcCCCCCCCCCCCCCCcCceE
Confidence 10 11122333 78988888777664 45665 566899999999999999999887 2222344
Q ss_pred ccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhh
Q psy1545 121 DTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFK 198 (454)
Q Consensus 121 ~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~ 198 (454)
+.+++..+.. .+++++|||+|++|+|+|..+. |.+|+++++.+++++. +++++.+.+.+.+.+
T Consensus 160 ~~~~~~~~~~---~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~----------- 224 (463)
T PRK06370 160 TNETIFSLDE---LPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILER----------- 224 (463)
T ss_pred cchHhhCccc---cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHHHHHHHHHHHh-----------
Confidence 5555544332 3899999999999999999986 9999999999998875 577777777666644
Q ss_pred hcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC-CcEEecCEEEEeeccCcCc
Q psy1545 199 RMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN-GHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 199 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~-g~~~~~D~vi~a~G~~p~~ 277 (454)
.||++++++.+.+++..++ +..+.+...+ +.++++|.|++|+|++|+.
T Consensus 225 ------------------------------~GV~i~~~~~V~~i~~~~~-~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 225 ------------------------------EGIDVRLNAECIRVERDGD-GIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred ------------------------------CCCEEEeCCEEEEEEEcCC-EEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 8999999999999987542 1112233333 4679999999999999998
Q ss_pred c-cccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceec
Q psy1545 278 N-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQD 356 (454)
Q Consensus 278 ~-~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~ 356 (454)
+ ..++..+++++++|+|.||+++||+.|||||+|||+..+ ++.+.|..||++||+||++..........
T Consensus 274 ~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~ 343 (463)
T PRK06370 274 DDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDCNGRG----------AFTHTAYNDARIVAANLLDGGRRKVSDRI 343 (463)
T ss_pred CCcCchhhCceECCCCcEeECcCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCCCCccccc
Confidence 7 224566888888999999999999999999999998743 57789999999999999975322222223
Q ss_pred cceeeeeeeeeecCeEEEEeecccCCcCCCCce--EEEe----------ecCCccEEEEEE--ECCeEEEEEEEcCC--c
Q psy1545 357 FSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE--ILLR----------VTRGEEYIKLVM--KDGRMQGAVLIGET--E 420 (454)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~~----------~~~~~~~~k~~~--~~~~i~G~~~~g~~--~ 420 (454)
+|+.+|+ +++++++|+++.++...+++ .... ....++|+|+++ ++++|+|+|++|+. +
T Consensus 344 ~p~~~~~------~p~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e 417 (463)
T PRK06370 344 VPYATYT------DPPLARVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDE 417 (463)
T ss_pred CCeEEEc------CCCcEeeeCCHHHHHHcCCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHH
Confidence 4444444 44899999998876543332 2110 123468999999 48999999999988 3
Q ss_pred hHHHHHHHHhcCCCcchhhhhcc-CCCCC
Q psy1545 421 IEEMCENLILNQLDLTDIADDLL-NPNID 448 (454)
Q Consensus 421 ~~~~~~~~i~~~~~~~~~~~~~~-~~~~~ 448 (454)
.++.+..+|++++|++||.+..+ ||+++
T Consensus 418 ~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 446 (463)
T PRK06370 418 MIHEILDAMYAGAPYTTLSRAIHIHPTVS 446 (463)
T ss_pred HHHHHHHHHHCCCCHHHHhcCcccCCChH
Confidence 57899999999999999977663 66543
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=397.83 Aligned_cols=381 Identities=19% Similarity=0.293 Sum_probs=299.7
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-cc--c-chhhhHHHHHhc-CcEEEcc-
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-SD--I-TVEETDANKFEG-LCTVIVD- 74 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-~~--~-~~~~~~~~~~~~-~i~~~~~- 74 (454)
-+.+|||||||+||++||..|++.++..+|+|+++++..++ .++.++..+ .. . .......+++.. +++++.+
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y--~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~ 79 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPY--ERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGV 79 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCC--CCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCC
Confidence 04689999999999999999999977779999999987643 333333211 10 0 011112344555 9999876
Q ss_pred eEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHH
Q psy1545 75 TVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATEL 150 (454)
Q Consensus 75 ~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~ 150 (454)
.|..++++++.|.+.+|+.+.||+||||||++|+.++++ ++++.+++.+++.++.+.+..+++++|||+|++|+|+
T Consensus 80 ~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~ 159 (396)
T PRK09754 80 TIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLEL 159 (396)
T ss_pred EEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHH
Confidence 799999999999988888999999999999999877764 5678888888998888887789999999999999999
Q ss_pred HHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccC
Q psy1545 151 VHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRD 228 (454)
Q Consensus 151 a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 228 (454)
|..|. |.+||++++.++++++.+++.....+.+.+.+
T Consensus 160 A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~----------------------------------------- 198 (396)
T PRK09754 160 AASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQ----------------------------------------- 198 (396)
T ss_pred HHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHH-----------------------------------------
Confidence 99986 99999999999988765676666666666644
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCcee
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVY 308 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iy 308 (454)
.||++++++.+++++.++ .+.+.+.+|+++++|.|++++|.+|+.. +++..++.. +++|.||+++||+.||||
T Consensus 199 ~GV~i~~~~~V~~i~~~~----~~~v~l~~g~~i~aD~Vv~a~G~~pn~~-l~~~~gl~~--~~gi~vd~~~~ts~~~Iy 271 (396)
T PRK09754 199 AGVRILLNNAIEHVVDGE----KVELTLQSGETLQADVVIYGIGISANDQ-LAREANLDT--ANGIVIDEACRTCDPAIF 271 (396)
T ss_pred CCCEEEeCCeeEEEEcCC----EEEEEECCCCEEECCEEEECCCCChhhH-HHHhcCCCc--CCCEEECCCCccCCCCEE
Confidence 899999999999998632 3567888999999999999999999998 777777765 467999999999999999
Q ss_pred ecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCc
Q psy1545 309 AAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDY 388 (454)
Q Consensus 309 a~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~ 388 (454)
|+|||+..+.+ .+.....++|+.|..||++||+||++.... ++...+ .|+++||.++.++|.....
T Consensus 272 A~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~------~~~~p~-~~~~~~~~~~~~~G~~~~~------ 337 (396)
T PRK09754 272 AGGDVAITRLD-NGALHRCESWENANNQAQIAAAAMLGLPLP------LLPPPW-FWSDQYSDNLQFIGDMRGD------ 337 (396)
T ss_pred EccceEeeeCC-CCCEEEECcHHHHHHHHHHHHHHhcCCCCC------CCCCCc-eEEEeCCccEEEeeCCCCC------
Confidence 99999976544 343445678999999999999999975321 222222 3578999999999985431
Q ss_pred eEEEeecC-CccEEEEEEECCeEEEEEEEcCCchHHHHHHHHhcCCCcchhhhhccCCCC
Q psy1545 389 EILLRVTR-GEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNI 447 (454)
Q Consensus 389 ~~~~~~~~-~~~~~k~~~~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 447 (454)
+.+.+.++ ...|+.+++++|+|+|+.++|.......+..+|.++..++. +.|.+|++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 395 (396)
T PRK09754 338 DWLCRGNPETQKAIWFNLQNGVLIGAVTLNQGREIRPIRKWIQSGKTFDA--KLLIDENI 395 (396)
T ss_pred EEEEecCCCCceEEEEEeeCCEEEEEEEECCHHHHHHHHHHHHCCCCCCH--HHhcCccc
Confidence 22333332 33466666689999999999999889999999999999876 56777754
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=409.60 Aligned_cols=390 Identities=18% Similarity=0.282 Sum_probs=288.2
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-------------------c---ccchh
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-------------------S---DITVE 58 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-------------------~---~~~~~ 58 (454)
|+||++|||||+||++||..+++. |.+|+|||++...+.|.++.+.+... . ..++.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~--G~~ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~ 124 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARN--KAKVALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLP 124 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc--CCeEEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHH
Confidence 468999999999999999999998 89999999988777777765443211 0 01111
Q ss_pred ------h--------hHHHHHhc-CcEEEcceEEEEeCcccEE--------------------------EeccCcEEEec
Q psy1545 59 ------E--------TDANKFEG-LCTVIVDTVAAIDPRVNCV--------------------------ITEKQNRIKYK 97 (454)
Q Consensus 59 ------~--------~~~~~~~~-~i~~~~~~v~~i~~~~~~v--------------------------~~~~g~~i~~d 97 (454)
. .....+.+ +++++.+++.+.++++..| .+.+|++++||
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad 204 (561)
T PTZ00058 125 LLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGK 204 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECC
Confidence 0 01112233 9999999998888665332 12356789999
Q ss_pred EEEEecCCCCCCCCCCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCC
Q psy1545 98 TLCICTGASPRKIWYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDP 175 (454)
Q Consensus 98 ~lviAtG~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~ 175 (454)
+||||||++|+.|++++.-+ ..+.+++..+. .+++++|||+|++|+|+|..+. |++||++++++++++. +|+
T Consensus 205 ~lVIATGS~P~~P~IpG~~~-v~ts~~~~~l~----~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~-~d~ 278 (561)
T PTZ00058 205 NILIAVGNKPIFPDVKGKEF-TISSDDFFKIK----EAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK-FDE 278 (561)
T ss_pred EEEEecCCCCCCCCCCCcee-EEEHHHHhhcc----CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc-CCH
Confidence 99999999999998873212 23445554432 3899999999999999999986 9999999999998874 788
Q ss_pred cchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEE
Q psy1545 176 GAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVK 255 (454)
Q Consensus 176 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~ 255 (454)
++.+.+.+.+++ .||++++++.+.+++..++ ..+.+.
T Consensus 279 ~i~~~l~~~L~~-----------------------------------------~GV~i~~~~~V~~I~~~~~--~~v~v~ 315 (561)
T PTZ00058 279 TIINELENDMKK-----------------------------------------NNINIITHANVEEIEKVKE--KNLTIY 315 (561)
T ss_pred HHHHHHHHHHHH-----------------------------------------CCCEEEeCCEEEEEEecCC--CcEEEE
Confidence 888888777755 8999999999999986542 124444
Q ss_pred ecCC-cEEecCEEEEeeccCcCcccccCCCCce-ecCCCceEeccccccccCceeecCcccccCCc--------------
Q psy1545 256 LTNG-HTHACDIVVSAIGVVPNSNIQVHGTPFE-LAPDCGIGVNELMQTSISNVYAAGDVCTPSWD-------------- 319 (454)
Q Consensus 256 ~~~g-~~~~~D~vi~a~G~~p~~~~~~~~~~l~-~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~-------------- 319 (454)
+.++ +++++|.|++|+|++|+.+ .+...++. .+++|+|.||+++||+.|||||+|||++....
T Consensus 316 ~~~~~~~i~aD~VlvA~Gr~Pn~~-~L~l~~~~~~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~ 394 (561)
T PTZ00058 316 LSDGRKYEHFDYVIYCVGRSPNTE-DLNLKALNIKTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNE 394 (561)
T ss_pred ECCCCEEEECCEEEECcCCCCCcc-ccCccccceecCCCeEEECcCCccCCCCEEEeEeccCcccccccccccccccccc
Confidence 5444 5799999999999999998 76554432 24679999999999999999999999983221
Q ss_pred ---------cccchh-hccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC---
Q psy1545 320 ---------LAKQWF-QMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN--- 386 (454)
Q Consensus 320 ---------~~~~~~-~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~--- 386 (454)
.++... .+++++.|..||++||+||++.......+..+|..+|+.| +++.+|+++.++...
T Consensus 395 ~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~~~~~~~~~~ip~~vft~p------eiA~vGlte~eA~~~~g~ 468 (561)
T PTZ00058 395 EPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYKLIPSVIFSHP------PIGTIGLSEQEAIDIYGK 468 (561)
T ss_pred ccccccccccccccccCcCchHHHHHHHHHHHHHHhCCCCcccCCCCCCeEEeCCc------hheeeeCCHHHHHHhcCC
Confidence 111222 3678999999999999999975322222233555566554 899999999877532
Q ss_pred -CceEEE-ee-------------cCCccEEEEEE--ECCeEEEEEEEcCCc--hHHHHHHHHhcCCCcchhhhhcc-CCC
Q psy1545 387 -DYEILL-RV-------------TRGEEYIKLVM--KDGRMQGAVLIGETE--IEEMCENLILNQLDLTDIADDLL-NPN 446 (454)
Q Consensus 387 -~~~~~~-~~-------------~~~~~~~k~~~--~~~~i~G~~~~g~~~--~~~~~~~~i~~~~~~~~~~~~~~-~~~ 446 (454)
.+.... .. ....+|+|+++ ++++|+|+|++|+.. .++.++.+|++++|++|+.+.++ ||+
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt 548 (561)
T PTZ00058 469 ENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPT 548 (561)
T ss_pred CcEEEEEeecchhhhhhhcccccCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCC
Confidence 122210 00 12458999999 489999999999773 46789999999999999977653 655
Q ss_pred CC
Q psy1545 447 ID 448 (454)
Q Consensus 447 ~~ 448 (454)
++
T Consensus 549 ~~ 550 (561)
T PTZ00058 549 AA 550 (561)
T ss_pred hH
Confidence 43
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=407.12 Aligned_cols=380 Identities=22% Similarity=0.305 Sum_probs=287.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-------------------c-------cc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-------------------S-------DI 55 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-------------------~-------~~ 55 (454)
+.|++|||||++|+.||..++++ +.+|+|||++...+.|.++.+.+... . ..
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~--g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 78 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQL--GADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV 78 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC--CCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence 14899999999999999999998 99999999988777666654432110 0 01
Q ss_pred chh--------------hhHHHHHhc-CcEEEcceEEE----EeCcccEEEeccCc--EEEecEEEEecCCCCCCCCCC-
Q psy1545 56 TVE--------------ETDANKFEG-LCTVIVDTVAA----IDPRVNCVITEKQN--RIKYKTLCICTGASPRKIWYS- 113 (454)
Q Consensus 56 ~~~--------------~~~~~~~~~-~i~~~~~~v~~----i~~~~~~v~~~~g~--~i~~d~lviAtG~~p~~~~~~- 113 (454)
++. ....+.+.+ +++++.+++++ ++++...|.+.+|+ .+.||+||||||++|+.|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~ 158 (466)
T PRK07845 79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAE 158 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCC
Confidence 110 011122334 89999999998 44555556555665 799999999999999877654
Q ss_pred CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCC
Q psy1545 114 PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTA 191 (454)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~ 191 (454)
.....+.+..++..+.. .+++++|||+|.+|+|+|..|+ |.+||++++.+++++. +++++...+.+.+.+
T Consensus 159 ~~~~~v~~~~~~~~~~~---~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~L~~---- 230 (466)
T PRK07845 159 PDGERILTWRQLYDLDE---LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADAAEVLEEVFAR---- 230 (466)
T ss_pred CCCceEEeehhhhcccc---cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHHHHHHHHHHHH----
Confidence 22122334444444332 2789999999999999999986 9999999999999886 678777777777754
Q ss_pred ChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEee
Q psy1545 192 KPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAI 271 (454)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~ 271 (454)
+||++++++.+.+++..++ .+.+.+.+|+++++|.|++++
T Consensus 231 -------------------------------------~gV~i~~~~~v~~v~~~~~---~~~v~~~~g~~l~~D~vl~a~ 270 (466)
T PRK07845 231 -------------------------------------RGMTVLKRSRAESVERTGD---GVVVTLTDGRTVEGSHALMAV 270 (466)
T ss_pred -------------------------------------CCcEEEcCCEEEEEEEeCC---EEEEEECCCcEEEecEEEEee
Confidence 8999999999999976542 356777788899999999999
Q ss_pred ccCcCcccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 272 GVVPNSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 272 G~~p~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
|++|+.+ . ++..+++++++|+|.||+++||+.|||||+|||++. +++++.|..||++||.|+++...
T Consensus 271 G~~pn~~-~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~----------~~l~~~A~~~g~~aa~~i~g~~~ 339 (466)
T PRK07845 271 GSVPNTA-GLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGDCTGV----------LPLASVAAMQGRIAMYHALGEAV 339 (466)
T ss_pred cCCcCCC-CCCchhhCceECCCCcEeECCCcccCCCCEEEEeeccCC----------ccchhHHHHHHHHHHHHHcCCCC
Confidence 9999997 4 466788888889999999999999999999999874 36889999999999999997532
Q ss_pred CCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCC--ceEEE---e-------ecCCccEEEEEE--ECCeEEEEEE
Q psy1545 350 NEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEND--YEILL---R-------VTRGEEYIKLVM--KDGRMQGAVL 415 (454)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~--~~~~~---~-------~~~~~~~~k~~~--~~~~i~G~~~ 415 (454)
....+..+|..+|+.+ +++++|+++.++...+ +.... . .....+|+|+++ ++++|+|+|+
T Consensus 340 ~~~~~~~~p~~vf~~p------~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~ 413 (466)
T PRK07845 340 SPLRLKTVASNVFTRP------EIATVGVSQAAIDSGEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVV 413 (466)
T ss_pred CcCCCCCCCEEEeCCC------cceeecCCHHHHHhCCCceEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEE
Confidence 1112233555555544 8999999987665333 22211 1 112468999999 4899999999
Q ss_pred EcCCc--hHHHHHHHHhcCCCcchhhhhc-cCCCCC
Q psy1545 416 IGETE--IEEMCENLILNQLDLTDIADDL-LNPNID 448 (454)
Q Consensus 416 ~g~~~--~~~~~~~~i~~~~~~~~~~~~~-~~~~~~ 448 (454)
+|+.. .++.+..+|++++|++||.+.+ .||+++
T Consensus 414 ~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 449 (466)
T PRK07845 414 VAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLS 449 (466)
T ss_pred ECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHH
Confidence 99873 5789999999999999997755 366543
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-51 Score=412.64 Aligned_cols=376 Identities=21% Similarity=0.282 Sum_probs=285.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECC----------CCccccccccccccccc-------------------
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTP----------SGIVKAVTKTVPVTKLL------------------- 52 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~----------~~~~~~~~~~~~~~~~~------------------- 52 (454)
+|||+|||||+||+.||..++++ |++|+|||+ +...+.|.++.+.+...
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~--G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~ 156 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNF--GASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW 156 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 48999999999999999999998 999999996 44566666665432211
Q ss_pred -----cccchh----------hhH----HHHHhc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCC
Q psy1545 53 -----SDITVE----------ETD----ANKFEG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWY 112 (454)
Q Consensus 53 -----~~~~~~----------~~~----~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~ 112 (454)
...++. .+. ...+.+ +++++.+++++++++. |.+ +|+.+.||+||||||++|..|++
T Consensus 157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~--V~v-~G~~~~~D~LVIATGs~p~~P~I 233 (558)
T PLN02546 157 KYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHT--VDV-DGKLYTARNILIAVGGRPFIPDI 233 (558)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCE--EEE-CCEEEECCEEEEeCCCCCCCCCC
Confidence 011111 011 112233 8999999999998864 555 67789999999999999999988
Q ss_pred CCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCC
Q psy1545 113 SPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNT 190 (454)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~ 190 (454)
++. ..+.+.+++..+.. .+++++|||+|++|+|+|..+. +.+|+++++.+++++. +++++...+.+.+.+
T Consensus 234 pG~-~~v~~~~~~l~~~~---~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-~d~~~~~~l~~~L~~--- 305 (558)
T PLN02546 234 PGI-EHAIDSDAALDLPS---KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-FDEEVRDFVAEQMSL--- 305 (558)
T ss_pred CCh-hhccCHHHHHhccc---cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-cCHHHHHHHHHHHHH---
Confidence 721 11234444444332 4899999999999999999986 8999999999998874 788888888777755
Q ss_pred CChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEe
Q psy1545 191 AKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSA 270 (454)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a 270 (454)
+||++++++.+.++...++ ..+.+.+.+++...+|.|+++
T Consensus 306 --------------------------------------~GV~i~~~~~v~~i~~~~~--g~v~v~~~~g~~~~~D~Viva 345 (558)
T PLN02546 306 --------------------------------------RGIEFHTEESPQAIIKSAD--GSLSLKTNKGTVEGFSHVMFA 345 (558)
T ss_pred --------------------------------------CCcEEEeCCEEEEEEEcCC--CEEEEEECCeEEEecCEEEEe
Confidence 8999999999999976432 234555555555568999999
Q ss_pred eccCcCcccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 271 IGVVPNSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 271 ~G~~p~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
+|++|+.+ + ++..+++++++|+|.||+++||++|||||+|||+.. .++++.|..||+++|+||++..
T Consensus 346 ~G~~Pnt~-~L~le~~gl~~d~~G~I~VD~~l~Ts~p~IYAaGDv~~~----------~~l~~~A~~~g~~~a~~i~g~~ 414 (558)
T PLN02546 346 TGRKPNTK-NLGLEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDVTDR----------INLTPVALMEGGALAKTLFGNE 414 (558)
T ss_pred eccccCCC-cCChhhcCCcCCCCCcEeECCCceeCCCCEEEeeccCCC----------cccHHHHHHHHHHHHHHHcCCC
Confidence 99999998 5 466788888889999999999999999999999974 3578899999999999999753
Q ss_pred CCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC--CceEEEe----------ecCCccEEEEEE--ECCeEEEEE
Q psy1545 349 KNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN--DYEILLR----------VTRGEEYIKLVM--KDGRMQGAV 414 (454)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~--~~~~~~~----------~~~~~~~~k~~~--~~~~i~G~~ 414 (454)
.....+..+|..+|+.| +++.||+++.++... ++.+... ..+..+|+|+++ ++++|+|+|
T Consensus 415 ~~~~~~~~vp~~vft~P------eia~VGlte~eA~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ 488 (558)
T PLN02546 415 PTKPDYRAVPSAVFSQP------PIGQVGLTEEQAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVH 488 (558)
T ss_pred CCcCCCCCCCEEEeCCc------hHhhccCCHHHHHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEE
Confidence 22222334566666655 899999999876543 2322111 113468999999 589999999
Q ss_pred EEcCCc--hHHHHHHHHhcCCCcchhhhhcc-CCCC
Q psy1545 415 LIGETE--IEEMCENLILNQLDLTDIADDLL-NPNI 447 (454)
Q Consensus 415 ~~g~~~--~~~~~~~~i~~~~~~~~~~~~~~-~~~~ 447 (454)
++|+.. .++.+..+|++++|++|+.+.++ ||++
T Consensus 489 ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPT~ 524 (558)
T PLN02546 489 MCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTA 524 (558)
T ss_pred EECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCh
Confidence 999883 57899999999999999976543 5543
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=407.13 Aligned_cols=378 Identities=22% Similarity=0.326 Sum_probs=286.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-----------------------cccchh
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-----------------------SDITVE 58 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-----------------------~~~~~~ 58 (454)
+||++||||||||++||..|+++ |.+|+|+|+++..+.|.+..+.+... ...++.
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~--G~~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQL--GLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK 81 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHC--CCcEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence 58999999999999999999998 99999999988666666554332110 001111
Q ss_pred h--h------------HHHHHhc-CcEEEcceEEEEeCcccEEEecc-CcEEEecEEEEecCCCCCCCCCC-Cceeeeec
Q psy1545 59 E--T------------DANKFEG-LCTVIVDTVAAIDPRVNCVITEK-QNRIKYKTLCICTGASPRKIWYS-PHVITIRD 121 (454)
Q Consensus 59 ~--~------------~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~-g~~i~~d~lviAtG~~p~~~~~~-~~~~~~~~ 121 (454)
. + ....+.+ +++++.++++++++++..|...+ ++.+.||+||||||++|..|+.. .....+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg~~~~~~~v~~ 161 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWT 161 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCCCCCCCCeEEc
Confidence 0 0 1112333 99999999999988776665433 36899999999999999766533 12223446
Q ss_pred cchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhh
Q psy1545 122 TDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKR 199 (454)
Q Consensus 122 ~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~ 199 (454)
.+++..+.. .+++++|||+|++|+|+|..|. |.+||++++.+++++. +++++.+.+.+.+.+
T Consensus 162 ~~~~~~~~~---~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~------------ 225 (462)
T PRK06416 162 SDEALNLDE---VPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAERALKK------------ 225 (462)
T ss_pred chHhhCccc---cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHH------------
Confidence 666655443 3799999999999999999986 9999999999998885 677777777777754
Q ss_pred cccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC---cEEecCEEEEeeccCcC
Q psy1545 200 MRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG---HTHACDIVVSAIGVVPN 276 (454)
Q Consensus 200 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g---~~~~~D~vi~a~G~~p~ 276 (454)
.||++++++.+.+++.+++ .+.+.++++ +++++|.|++|+|++|+
T Consensus 226 -----------------------------~gV~i~~~~~V~~i~~~~~---~v~v~~~~gg~~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 226 -----------------------------RGIKIKTGAKAKKVEQTDD---GVTVTLEDGGKEETLEADYVLVAVGRRPN 273 (462)
T ss_pred -----------------------------cCCEEEeCCEEEEEEEeCC---EEEEEEEeCCeeEEEEeCEEEEeeCCccC
Confidence 8999999999999987542 455666665 67999999999999999
Q ss_pred ccccc--CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcce
Q psy1545 277 SNIQV--HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVI 354 (454)
Q Consensus 277 ~~~~~--~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~ 354 (454)
.+ ++ +..++.++ +|+|.||+++||+.|+|||+|||+.. +++++.|..||+.+|.||++...
T Consensus 274 ~~-~l~l~~~gl~~~-~g~i~vd~~~~t~~~~VyAiGD~~~~----------~~~~~~A~~~g~~aa~ni~~~~~----- 336 (462)
T PRK06416 274 TE-NLGLEELGVKTD-RGFIEVDEQLRTNVPNIYAIGDIVGG----------PMLAHKASAEGIIAAEAIAGNPH----- 336 (462)
T ss_pred CC-CCCchhcCCeec-CCEEeECCCCccCCCCEEEeeecCCC----------cchHHHHHHHHHHHHHHHcCCCC-----
Confidence 98 64 46678887 89999999999999999999999864 35788999999999999997421
Q ss_pred eccceeeeeeeeeecCeEEEEeecccCCcCCCCce--EEEe----------ecCCccEEEEEE--ECCeEEEEEEEcCC-
Q psy1545 355 QDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE--ILLR----------VTRGEEYIKLVM--KDGRMQGAVLIGET- 419 (454)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~~----------~~~~~~~~k~~~--~~~~i~G~~~~g~~- 419 (454)
.+++. ..+...+++++++++|+++.++...+++ +... .....+|+|+++ ++++|+|+|++|+.
T Consensus 337 -~~~~~-~~~~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a 414 (462)
T PRK06416 337 -PIDYR-GIPAVTYTHPEVASVGLTEAKAKEEGFDVKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARA 414 (462)
T ss_pred -CCCCC-CCCeEEECCCceEEEeCCHHHHHhcCCCeEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCH
Confidence 11111 1223456677999999998876543332 2211 123468999999 58999999999987
Q ss_pred -chHHHHHHHHhcCCCcchhhhhc-cCCCCC
Q psy1545 420 -EIEEMCENLILNQLDLTDIADDL-LNPNID 448 (454)
Q Consensus 420 -~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~ 448 (454)
+.++.++.+|++++|++||.+.. .||+++
T Consensus 415 ~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 445 (462)
T PRK06416 415 SELIQEAQLAINWEATPEDLALTIHPHPTLS 445 (462)
T ss_pred HHHHHHHHHHHHCCCCHHHHhhCccCCCCHH
Confidence 35789999999999999998875 366543
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-50 Score=404.97 Aligned_cols=380 Identities=21% Similarity=0.248 Sum_probs=280.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc--c---------------------ccchh
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL--S---------------------DITVE 58 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~--~---------------------~~~~~ 58 (454)
+||++||||||||++||..|++. |.+|+|||++...+.|.+..+.+... . ..++.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~--G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 81 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQL--GLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYG 81 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHH
Confidence 58999999999999999999998 99999999987777776664433210 0 00000
Q ss_pred h-------------hHHHH-Hhc-CcEEEcceEEEEeCcccEEEeccC--cEEEecEEEEecCCCCCCCCCCCceeeeec
Q psy1545 59 E-------------TDANK-FEG-LCTVIVDTVAAIDPRVNCVITEKQ--NRIKYKTLCICTGASPRKIWYSPHVITIRD 121 (454)
Q Consensus 59 ~-------------~~~~~-~~~-~i~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lviAtG~~p~~~~~~~~~~~~~~ 121 (454)
. ..... +.. +++.+.++.++++.....|...+| .+++||+||||||++|+.||..+....+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~~~v~~ 161 (466)
T PRK07818 82 AAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSENVVT 161 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCCCcEEc
Confidence 0 00011 122 778888888888776655655455 379999999999999987543211011223
Q ss_pred cchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhh
Q psy1545 122 TDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKR 199 (454)
Q Consensus 122 ~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~ 199 (454)
.++..... ..+++++|||+|++|+|+|..++ |.+|+++++.+++++. +|+++...+.+.+.+
T Consensus 162 ~~~~~~~~---~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~------------ 225 (466)
T PRK07818 162 YEEQILSR---ELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEIAKQYKK------------ 225 (466)
T ss_pred hHHHhccc---cCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHHHHHHHH------------
Confidence 33322221 13799999999999999999987 9999999999999885 677777777777754
Q ss_pred cccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec--CC--cEEecCEEEEeeccCc
Q psy1545 200 MRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT--NG--HTHACDIVVSAIGVVP 275 (454)
Q Consensus 200 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~--~g--~~~~~D~vi~a~G~~p 275 (454)
.||++++++.|++++.+++ .+.+.+. +| +++++|.|++|+|++|
T Consensus 226 -----------------------------~gV~i~~~~~v~~i~~~~~---~~~v~~~~~~g~~~~i~~D~vi~a~G~~p 273 (466)
T PRK07818 226 -----------------------------LGVKILTGTKVESIDDNGS---KVTVTVSKKDGKAQELEADKVLQAIGFAP 273 (466)
T ss_pred -----------------------------CCCEEEECCEEEEEEEeCC---eEEEEEEecCCCeEEEEeCEEEECcCccc
Confidence 8999999999999986542 3444443 56 4799999999999999
Q ss_pred Ccccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCc-
Q psy1545 276 NSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEP- 352 (454)
Q Consensus 276 ~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~- 352 (454)
+.+ + ++..++.++++|+|.||+++||+.|+|||+|||+.. +++++.|..||++||.||++......
T Consensus 274 n~~-~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~----------~~l~~~A~~~g~~aa~~i~g~~~~~~~ 342 (466)
T PRK07818 274 RVE-GYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAK----------LQLAHVAEAQGVVAAETIAGAETLELG 342 (466)
T ss_pred CCC-CCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeecCCC----------cccHhHHHHHHHHHHHHHcCCCCCccC
Confidence 997 5 466788888889999999999999999999999863 36889999999999999997532111
Q ss_pred ceeccceeeeeeeeeecCeEEEEeecccCCcCCCCce--EEEe----------ecCCccEEEEEE--ECCeEEEEEEEcC
Q psy1545 353 VIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE--ILLR----------VTRGEEYIKLVM--KDGRMQGAVLIGE 418 (454)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~~----------~~~~~~~~k~~~--~~~~i~G~~~~g~ 418 (454)
.+...|..+|+ +++++++|+++.++...+++ .... .....+|+|+++ ++++|+|+|++|+
T Consensus 343 ~~~~~p~~~~~------~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~ 416 (466)
T PRK07818 343 DYRMMPRATFC------QPQVASFGLTEEQAREEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGP 416 (466)
T ss_pred ccCCCCeEEEC------CCCeEEEeCCHHHHHhCCCcEEEEEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECC
Confidence 12223444444 45999999999876543332 1110 123468999999 4899999999998
Q ss_pred Cc--hHHHHHHHHhcCCCcchhhhhc-cCCCCC
Q psy1545 419 TE--IEEMCENLILNQLDLTDIADDL-LNPNID 448 (454)
Q Consensus 419 ~~--~~~~~~~~i~~~~~~~~~~~~~-~~~~~~ 448 (454)
.. .++.++.+|++++|++||.+.+ .||+++
T Consensus 417 ~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 449 (466)
T PRK07818 417 DVSELLPELTLAQKWDLTAEELARNVHTHPTLS 449 (466)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHhcCccCCCchH
Confidence 73 5788999999999999998765 365543
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-50 Score=403.27 Aligned_cols=381 Identities=19% Similarity=0.245 Sum_probs=286.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC---------Cccccccccccccccc--------------c-----
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS---------GIVKAVTKTVPVTKLL--------------S----- 53 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~---------~~~~~~~~~~~~~~~~--------------~----- 53 (454)
+||++|||||++|+.||..++++ .|.+|+|||+. ...+.|.++.+.+... .
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~-~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATL-YKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHh-cCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 58999999999999999999995 17899999973 4566677765433211 0
Q ss_pred ------ccchhh--------------hHHHHHhc--CcEEEcceEEEEeCcccEEEecc------CcEEEecEEEEecCC
Q psy1545 54 ------DITVEE--------------TDANKFEG--LCTVIVDTVAAIDPRVNCVITEK------QNRIKYKTLCICTGA 105 (454)
Q Consensus 54 ------~~~~~~--------------~~~~~~~~--~i~~~~~~v~~i~~~~~~v~~~~------g~~i~~d~lviAtG~ 105 (454)
..++.. .....+.+ +++++.++..+++++...|.... .+.+.||+||||||+
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs 161 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGS 161 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCC
Confidence 011110 01112333 79999999999987654443211 247999999999999
Q ss_pred CCCCCCCCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc-----CCcEEEEEeCCCccccccCCcchhh
Q psy1545 106 SPRKIWYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS-----NVDIVWVVKDKHISATFLDPGAAEF 180 (454)
Q Consensus 106 ~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~-----g~~V~~i~~~~~~~~~~~d~~~~~~ 180 (454)
+|..|++++. ..+.+.+++..+.. .+++++|||+|++|+|+|..+. |.+||++++.+++++. +|+++.+.
T Consensus 162 ~p~~p~i~G~-~~~~~~~~~~~~~~---~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~-~d~~~~~~ 236 (486)
T TIGR01423 162 WPQMLGIPGI-EHCISSNEAFYLDE---PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG-FDSTLRKE 236 (486)
T ss_pred CCCCCCCCCh-hheechhhhhcccc---CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc-cCHHHHHH
Confidence 9998888721 11235555554432 4899999999999999997653 8999999999999874 78988888
Q ss_pred hHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCc
Q psy1545 181 FQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGH 260 (454)
Q Consensus 181 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~ 260 (454)
+.+.+++ +||++++++.+++++..++ ....+.+++|+
T Consensus 237 l~~~L~~-----------------------------------------~GI~i~~~~~v~~i~~~~~--~~~~v~~~~g~ 273 (486)
T TIGR01423 237 LTKQLRA-----------------------------------------NGINIMTNENPAKVTLNAD--GSKHVTFESGK 273 (486)
T ss_pred HHHHHHH-----------------------------------------cCCEEEcCCEEEEEEEcCC--ceEEEEEcCCC
Confidence 8888865 8999999999999986532 23556777888
Q ss_pred EEecCEEEEeeccCcCccccc--CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHH
Q psy1545 261 THACDIVVSAIGVVPNSNIQV--HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGT 338 (454)
Q Consensus 261 ~~~~D~vi~a~G~~p~~~~~~--~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~ 338 (454)
++++|.|++|+|++|+.+ ++ +..+++++++|+|.||+++||++|||||+|||++.+ ++.+.|.+||+
T Consensus 274 ~i~~D~vl~a~G~~Pn~~-~l~l~~~gl~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~----------~l~~~A~~qG~ 342 (486)
T TIGR01423 274 TLDVDVVMMAIGRVPRTQ-TLQLDKVGVELTKKGAIQVDEFSRTNVPNIYAIGDVTDRV----------MLTPVAINEGA 342 (486)
T ss_pred EEEcCEEEEeeCCCcCcc-cCCchhhCceECCCCCEecCCCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHH
Confidence 899999999999999998 54 456788888999999999999999999999998743 67888999999
Q ss_pred HHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCc--eEEE---e-------e-cCCccEEEEEE
Q psy1545 339 YAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDY--EILL---R-------V-TRGEEYIKLVM 405 (454)
Q Consensus 339 ~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~--~~~~---~-------~-~~~~~~~k~~~ 405 (454)
+||+||++.......+...|..+|+.| ++++||+++.++..... .... . . ....+|+|+++
T Consensus 343 ~aa~ni~g~~~~~~~~~~vp~~vft~p------eia~vGlte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~ 416 (486)
T TIGR01423 343 AFVDTVFGNKPRKTDHTRVASAVFSIP------PIGTCGLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVT 416 (486)
T ss_pred HHHHHHhCCCCcccCCCCCCEEEeCCC------ceEEeeCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEE
Confidence 999999974321112233666777765 89999999987653321 1110 0 0 01257999999
Q ss_pred --ECCeEEEEEEEcCC--chHHHHHHHHhcCCCcchhhhhc-cCCCCC
Q psy1545 406 --KDGRMQGAVLIGET--EIEEMCENLILNQLDLTDIADDL-LNPNID 448 (454)
Q Consensus 406 --~~~~i~G~~~~g~~--~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~ 448 (454)
++++|||+|++|+. +.++.++.+|++++|++|+.+.+ .||+++
T Consensus 417 d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~dl~~~~~~hPt~s 464 (486)
T TIGR01423 417 NHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSA 464 (486)
T ss_pred ECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCCcH
Confidence 48999999999987 35789999999999999997765 355554
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=398.01 Aligned_cols=375 Identities=20% Similarity=0.288 Sum_probs=284.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-------------------c----ccchh
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-------------------S----DITVE 58 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-------------------~----~~~~~ 58 (454)
+||++|||+|++|+.||.. .. |.+|+|||++...+.|.++.+.+... . ..++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~--g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FA--DKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HC--CCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHH
Confidence 5899999999999998654 34 89999999988888787775433211 0 01110
Q ss_pred -----------hhH----HHHH---hc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC-Cceee
Q psy1545 59 -----------ETD----ANKF---EG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS-PHVIT 118 (454)
Q Consensus 59 -----------~~~----~~~~---~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~-~~~~~ 118 (454)
... .... ++ +++++.++..+.+. ++|.+.+|++++||+||||||++|+.|++. .....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~--~~V~~~~g~~~~~d~lIiATGs~p~~p~~~~~~~~~ 155 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGP--RTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSGVR 155 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecC--CEEEECCCcEEEeCEEEEEECCCCCCCCCCCCCCCE
Confidence 000 1111 22 89999998888854 557776777899999999999999888754 22224
Q ss_pred eeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhh
Q psy1545 119 IRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETI 196 (454)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~ 196 (454)
+.+.+++..+.+. +++++|||+|++|+|+|..|. |.+|+++++.+++++. +++++...+.+.+
T Consensus 156 ~~~~~~~~~l~~~---~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~~~----------- 220 (452)
T TIGR03452 156 YHTNEDIMRLPEL---PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-LDEDISDRFTEIA----------- 220 (452)
T ss_pred EEcHHHHHhhhhc---CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-cCHHHHHHHHHHH-----------
Confidence 5677787777653 899999999999999999986 9999999999988764 6777666554432
Q ss_pred hhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 197 FKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
+.||++++++.+++++.+++ .+.+.+.+|+++++|.|++|+|++|+
T Consensus 221 -------------------------------~~gI~i~~~~~V~~i~~~~~---~v~v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 221 -------------------------------KKKWDIRLGRNVTAVEQDGD---GVTLTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred -------------------------------hcCCEEEeCCEEEEEEEcCC---eEEEEEcCCCEEEcCEEEEeeccCcC
Confidence 15899999999999986542 35677778888999999999999999
Q ss_pred ccccc--CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC-CCcc
Q psy1545 277 SNIQV--HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK-NEPV 353 (454)
Q Consensus 277 ~~~~~--~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~ 353 (454)
.+ ++ +..|++++++|+|.||+++||++|+|||+|||+.. +++.+.|.+||+++|+||++... ....
T Consensus 267 ~~-~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~----------~~l~~~A~~~g~~~a~ni~~~~~~~~~~ 335 (452)
T TIGR03452 267 GD-LLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSP----------YQLKHVANAEARVVKHNLLHPNDLRKMP 335 (452)
T ss_pred CC-CcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccCc----------ccChhHHHHHHHHHHHHhcCCCCcccCC
Confidence 98 64 45688888889999999999999999999999874 36788999999999999997532 1112
Q ss_pred eeccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEEe------------ecCCccEEEEEE--ECCeEEEEEEEcCC
Q psy1545 354 IQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLR------------VTRGEEYIKLVM--KDGRMQGAVLIGET 419 (454)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~------------~~~~~~~~k~~~--~~~~i~G~~~~g~~ 419 (454)
+...|..+|+. ++++++|+++.++...+++.... .....+|+|+++ ++++|||+|++|+.
T Consensus 336 ~~~~p~~i~t~------p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~ 409 (452)
T TIGR03452 336 HDFVPSAVFTH------PQIATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQ 409 (452)
T ss_pred CCCCCeEEECC------CCeeeeeCCHHHHHhcCCCeEEEEecCCchhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCC
Confidence 23345555544 49999999998775433322110 123568999999 48999999999987
Q ss_pred c--hHHHHHHHHhcCCCcchhhhh-c-cCCCCC
Q psy1545 420 E--IEEMCENLILNQLDLTDIADD-L-LNPNID 448 (454)
Q Consensus 420 ~--~~~~~~~~i~~~~~~~~~~~~-~-~~~~~~ 448 (454)
. .++.++.+|++++|++|+.+. + .||+++
T Consensus 410 a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~ 442 (452)
T TIGR03452 410 ASSLIQPLITAMAFGLDAREMARKQYWIHPALP 442 (452)
T ss_pred HHHHHHHHHHHHHcCCCHHHHhhCCcccCCchH
Confidence 4 578889999999999999875 3 577654
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-50 Score=402.61 Aligned_cols=379 Identities=19% Similarity=0.243 Sum_probs=282.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc----------------------cccchh--
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL----------------------SDITVE-- 58 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~----------------------~~~~~~-- 58 (454)
||++||||||||++||..++++ |.+|+|||+++..+.|.++.+.+... ...++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~--g~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL--GASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGEL 78 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHH
Confidence 6999999999999999999998 89999999988777776653322100 001111
Q ss_pred ----hh---------HHHHHhc-CcEEEcceEEEEeCcccEEEeccCc-EEEecEEEEecCCCCCCCCCC-Cceeeeecc
Q psy1545 59 ----ET---------DANKFEG-LCTVIVDTVAAIDPRVNCVITEKQN-RIKYKTLCICTGASPRKIWYS-PHVITIRDT 122 (454)
Q Consensus 59 ----~~---------~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~-~i~~d~lviAtG~~p~~~~~~-~~~~~~~~~ 122 (454)
.. ....+.+ +++++.+++.+++. ++|.+.++. .+.||+||||||++|+.|+++ .....+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~--~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~~~~~ 156 (463)
T TIGR02053 79 LEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDP--KTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTS 156 (463)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccC--CEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCceECc
Confidence 00 1122334 89999999888764 456665553 689999999999999999887 222234555
Q ss_pred chHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhc
Q psy1545 123 DSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRM 200 (454)
Q Consensus 123 ~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~ 200 (454)
+++..+.+ .+++++|||+|.+|+|+|..|. |.+|+++++.+++++. +++++...+.+.+.+
T Consensus 157 ~~~~~~~~---~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~------------- 219 (463)
T TIGR02053 157 EEALALDR---IPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAE------------- 219 (463)
T ss_pred hhhhCccc---CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHHHHHHHHHHHH-------------
Confidence 55544432 3799999999999999999986 9999999999998885 677777777777654
Q ss_pred ccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec---CCcEEecCEEEEeeccCcCc
Q psy1545 201 RYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---NGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g~~~~~D~vi~a~G~~p~~ 277 (454)
.||+++++++|++++.+++ ...+.+. +++++++|.|++|+|++|+.
T Consensus 220 ----------------------------~gV~i~~~~~V~~i~~~~~---~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 220 ----------------------------EGIEVVTSAQVKAVSVRGG---GKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred ----------------------------cCCEEEcCcEEEEEEEcCC---EEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 8999999999999987542 2344443 23679999999999999998
Q ss_pred ccc-cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceec
Q psy1545 278 NIQ-VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQD 356 (454)
Q Consensus 278 ~~~-~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~ 356 (454)
+.+ ++..+++++++|+|.||+++||+.|+|||+|||+..+ ++++.|..||++||.||++....+..+..
T Consensus 269 ~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~ 338 (463)
T TIGR02053 269 DGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDVTGGL----------QLEYVAAKEGVVAAENALGGANAKLDLLV 338 (463)
T ss_pred CCCCccccCCEECCCCcEeECCCccCCCCCEEEeeecCCCc----------ccHhHHHHHHHHHHHHhcCCCCCccCcCC
Confidence 722 5667788888999999999999999999999999743 57889999999999999974221111222
Q ss_pred cceeeeeeeeeecCeEEEEeecccCCcCCCCce--EEE---e-------ecCCccEEEEEE--ECCeEEEEEEEcCCc--
Q psy1545 357 FSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE--ILL---R-------VTRGEEYIKLVM--KDGRMQGAVLIGETE-- 420 (454)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~---~-------~~~~~~~~k~~~--~~~~i~G~~~~g~~~-- 420 (454)
+|..+ +.+++++++|+++.++...+++ ... . .....+|+|+++ ++++|+|+|++|+..
T Consensus 339 ~p~~~------~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e 412 (463)
T TIGR02053 339 IPRVV------FTDPAVASVGLTEAEAQKAGIECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAE 412 (463)
T ss_pred CCeEE------eccCceEEEeCCHHHHHhcCCCeEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHH
Confidence 34433 4455999999998776543332 111 0 123468999999 489999999999983
Q ss_pred hHHHHHHHHhcCCCcchhhhhccCCCCCCC
Q psy1545 421 IEEMCENLILNQLDLTDIADDLLNPNIDID 450 (454)
Q Consensus 421 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 450 (454)
.++.+..+|++++|++|+.+.. +|+.++.
T Consensus 413 ~i~~~~~ai~~~~t~~~l~~~~-~~~pt~~ 441 (463)
T TIGR02053 413 VINEAALAIRAGMTVDDLIDTL-HPFPTMA 441 (463)
T ss_pred HHHHHHHHHHCCCCHHHHhhCc-ccCCChH
Confidence 5789999999999999996654 3444443
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=400.46 Aligned_cols=380 Identities=19% Similarity=0.198 Sum_probs=277.7
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECC-CCccccccccccccccc------------------------ccc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTP-SGIVKAVTKTVPVTKLL------------------------SDI 55 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~-~~~~~~~~~~~~~~~~~------------------------~~~ 55 (454)
++|||+||||||||++||..+++. |++|+|||+ ....+.|.++.+.+... ...
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~--G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~ 79 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQL--GLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTL 79 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCcc
Confidence 158999999999999999999998 999999997 45555555553322110 001
Q ss_pred chhh-------------hHHH-HHhc-CcEEEcceEEEEeCcccEEEeccCc--EEEecEEEEecCCCCCCCCCC--Cce
Q psy1545 56 TVEE-------------TDAN-KFEG-LCTVIVDTVAAIDPRVNCVITEKQN--RIKYKTLCICTGASPRKIWYS--PHV 116 (454)
Q Consensus 56 ~~~~-------------~~~~-~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lviAtG~~p~~~~~~--~~~ 116 (454)
++.. ...+ .+.+ +++++.+++.+.++++..|...+|+ +++||+||||||++|..++.. ++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ipg~~~~~~ 159 (466)
T PRK06115 80 NLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQ 159 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCCCCCCCCCC
Confidence 1110 0011 1223 7999998887766655455555554 699999999999998643322 222
Q ss_pred eeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChh
Q psy1545 117 ITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPE 194 (454)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~ 194 (454)
. +.+.+++..+. ..+++++|||+|++|+|+|..+. |.+||++++.+++++. +++++...+.+.+.+
T Consensus 160 ~-~~~~~~~~~~~---~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~~~l~~------- 227 (466)
T PRK06115 160 R-IIDSTGALSLP---EVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQKALTK------- 227 (466)
T ss_pred e-EECHHHHhCCc---cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHHHHHHh-------
Confidence 2 23444444332 24899999999999999999886 9999999999999885 677777777777754
Q ss_pred hhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec---C--CcEEecCEEEE
Q psy1545 195 TIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---N--GHTHACDIVVS 269 (454)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~--g~~~~~D~vi~ 269 (454)
.||++++++.+++++.+++ .+.+.+. + ++++++|.|++
T Consensus 228 ----------------------------------~gV~i~~~~~V~~i~~~~~---~v~v~~~~~~~g~~~~i~~D~vi~ 270 (466)
T PRK06115 228 ----------------------------------QGMKFKLGSKVTGATAGAD---GVSLTLEPAAGGAAETLQADYVLV 270 (466)
T ss_pred ----------------------------------cCCEEEECcEEEEEEEcCC---eEEEEEEEcCCCceeEEEeCEEEE
Confidence 8999999999999986542 2334332 2 35799999999
Q ss_pred eeccCcCccccc--CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 270 AIGVVPNSNIQV--HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 270 a~G~~p~~~~~~--~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
|+|++|+++ .+ +..++.++++| +.||+++||+.|+|||+|||++.+ ++++.|.+||+++|+||++.
T Consensus 271 a~G~~pn~~-~l~~~~~g~~~~~~G-~~vd~~~~Ts~~~IyA~GD~~~~~----------~la~~A~~~g~~aa~~i~~~ 338 (466)
T PRK06115 271 AIGRRPYTQ-GLGLETVGLETDKRG-MLANDHHRTSVPGVWVIGDVTSGP----------MLAHKAEDEAVACIERIAGK 338 (466)
T ss_pred ccCCccccc-cCCcccccceeCCCC-EEECCCeecCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCC
Confidence 999999997 54 45567776666 778999999999999999999743 68899999999999999975
Q ss_pred CCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCce--EEE---e-------ecCCccEEEEEE--ECCeEEEE
Q psy1545 348 VKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE--ILL---R-------VTRGEEYIKLVM--KDGRMQGA 413 (454)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~---~-------~~~~~~~~k~~~--~~~~i~G~ 413 (454)
.. ...+..+|..+|+.+ +++++|+++.++...+++ +.. . .....+|+|+++ ++++|+|+
T Consensus 339 ~~-~~~~~~~p~~~~t~p------~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~ 411 (466)
T PRK06115 339 AG-EVNYGLIPGVIYTRP------EVATVGKTEEQLKAEGRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGV 411 (466)
T ss_pred CC-CCCCCCCCeEEECCc------ccEEeeCCHHHHHHCCCCEEEEEEecccChhhHhcCCCceEEEEEEECCCCEEEEE
Confidence 32 222344677777765 899999999876543332 211 1 123468999999 48999999
Q ss_pred EEEcCCc--hHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 414 VLIGETE--IEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 414 ~~~g~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
|++|+.. .++.++.+|++++|++||.+.+ +|++++.+
T Consensus 412 ~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~-~~hPt~~e 450 (466)
T PRK06115 412 HMVGPSVSEMIGEFCVAMEFSASAEDIALTC-HPHPTRSE 450 (466)
T ss_pred EEECCCHHHHHHHHHHHHHcCCCHHHHhhCc-cCCCChHH
Confidence 9999873 5788899999999999997654 34444443
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=417.10 Aligned_cols=388 Identities=20% Similarity=0.269 Sum_probs=309.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcC--CCCeEEEECCCCccccccccccccccccc---cchhhhHHHHHhc-CcEEEcc-
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLH--PGESIGLVTPSGIVKAVTKTVPVTKLLSD---ITVEETDANKFEG-LCTVIVD- 74 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~--~g~~v~lie~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~i~~~~~- 74 (454)
+++|||||+|+||+++|..|+++. ++.+|+||++++++.+ ++..++..+.. .++......++.+ +++++.+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y--~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~ 80 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAY--DRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGE 80 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcc--cCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCC
Confidence 568999999999999999998763 3679999999988753 33222222211 1122222345556 9999876
Q ss_pred eEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHH
Q psy1545 75 TVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATEL 150 (454)
Q Consensus 75 ~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~ 150 (454)
+|+.+++..+.|.+.+|+.+.||+||||||++|+.|+++ .+++.+++.+++.++.+....+++++|||||++|+|+
T Consensus 81 ~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~ 160 (847)
T PRK14989 81 RAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEA 160 (847)
T ss_pred EEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHH
Confidence 799999998899888888999999999999999999887 4577888999999988877789999999999999999
Q ss_pred HHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccC
Q psy1545 151 VHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRD 228 (454)
Q Consensus 151 a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 228 (454)
|..|. |.+|+++++.+++++..+|++....+.+.+.+
T Consensus 161 A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~----------------------------------------- 199 (847)
T PRK14989 161 AGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIES----------------------------------------- 199 (847)
T ss_pred HHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHH-----------------------------------------
Confidence 99997 99999999999998877899988888888865
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCcee
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVY 308 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iy 308 (454)
.||++++++.++++..+++ +....+.+++|+++++|.|++|+|++|+.+ +++..|++++++|+|.||++|||+.||||
T Consensus 200 ~GV~v~~~~~v~~I~~~~~-~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~-L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IY 277 (847)
T PRK14989 200 MGVRVHTSKNTLEIVQEGV-EARKTMRFADGSELEVDFIVFSTGIRPQDK-LATQCGLAVAPRGGIVINDSCQTSDPDIY 277 (847)
T ss_pred CCCEEEcCCeEEEEEecCC-CceEEEEECCCCEEEcCEEEECCCcccCch-HHhhcCccCCCCCcEEECCCCcCCCCCEE
Confidence 8999999999999976432 224567889999999999999999999998 88888999988999999999999999999
Q ss_pred ecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCc
Q psy1545 309 AAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDY 388 (454)
Q Consensus 309 a~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~ 388 (454)
|+|||+..... ...+++.|..||++||.||++.. ..|+....+...+.+|++++++|.......+ ..
T Consensus 278 AiGD~a~~~~~------~~gl~~~a~~~a~vaa~~i~g~~------~~~~g~~~~~~lk~~G~~v~s~G~~~~~~~~-~~ 344 (847)
T PRK14989 278 AIGECASWNNR------VFGLVAPGYKMAQVAVDHLLGSE------NAFEGADLSAKLKLLGVDVGGIGDAHGRTPG-AR 344 (847)
T ss_pred EeecceeEcCc------ccccHHHHHHHHHHHHHHhcCCC------cCCCCcccceEEEECCcceEecccccCCCCC-ce
Confidence 99999986321 23578899999999999999752 1244444555678899999999954322111 11
Q ss_pred eEEEeecCCccEEEEEE--ECCeEEEEEEEcCCchHHHHHHHHhcCCCcchhhhhccCCCC
Q psy1545 389 EILLRVTRGEEYIKLVM--KDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNI 447 (454)
Q Consensus 389 ~~~~~~~~~~~~~k~~~--~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 447 (454)
...+.+....+|.|+++ ++++|+|++++|+......+..++.+++++.+-.+.|+.|..
T Consensus 345 ~~~~~~~~~~~y~Klv~~~~~~~LlGa~lvGd~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ 405 (847)
T PRK14989 345 SYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIELPENPDSLILPAH 405 (847)
T ss_pred eEEEEcCCCCEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHcCCCCccchhheecCCC
Confidence 12222333468999999 467999999999988788888888899999887777776544
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=396.29 Aligned_cols=378 Identities=18% Similarity=0.223 Sum_probs=278.2
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc--ccccccccccccccc--------ccc-hh-----------
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI--VKAVTKTVPVTKLLS--------DIT-VE----------- 58 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~--~~~~~~~~~~~~~~~--------~~~-~~----------- 58 (454)
++|||+||||||||++||..|+++ |.+|+|||+++. .+.|.+..+.+.... ++. +.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~--g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASA--GKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLR 79 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhC--CCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHH
Confidence 158999999999999999999998 899999999863 444555443332210 110 00
Q ss_pred hhHHHHHhc-CcEEEcceEEEEeCcccEEEecc---CcEEEecEEEEecCCCCCCCCCCC--ceeeeeccchHHHHHHHh
Q psy1545 59 ETDANKFEG-LCTVIVDTVAAIDPRVNCVITEK---QNRIKYKTLCICTGASPRKIWYSP--HVITIRDTDSVAVLQEKL 132 (454)
Q Consensus 59 ~~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~---g~~i~~d~lviAtG~~p~~~~~~~--~~~~~~~~~~~~~l~~~~ 132 (454)
....+.+.+ +++++.+++.+++.. +|.+.. ...+.||+||||||++|+.|++++ ....+.+..++..+..
T Consensus 80 ~~~~~~~~~~gV~~~~g~~~~~~~~--~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~~~v~~~~~~~~~~~-- 155 (438)
T PRK07251 80 GKNYAMLAGSGVDLYDAEAHFVSNK--VIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTGIQSLET-- 155 (438)
T ss_pred HHHHHHHHhCCCEEEEEEEEEccCC--EEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCCCcEEchHHHhcchh--
Confidence 011123344 999999988887644 444432 247999999999999999888872 2223445555555432
Q ss_pred hcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCC
Q psy1545 133 KSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP 210 (454)
Q Consensus 133 ~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (454)
.+++++|||+|++|+|+|..++ |.+|+++++++++++. .++++...+.+.+.+
T Consensus 156 -~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~----------------------- 210 (438)
T PRK07251 156 -LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEE----------------------- 210 (438)
T ss_pred -cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHHHHHHHHHHHHH-----------------------
Confidence 4899999999999999999986 9999999999998875 477777766666644
Q ss_pred CCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccC--CCCcee
Q psy1545 211 SLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVH--GTPFEL 288 (454)
Q Consensus 211 ~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~--~~~l~~ 288 (454)
.||++++++++++++.+++ .+.+. .+++++++|.+++|+|++|+.+ .+. ..++.+
T Consensus 211 ------------------~GI~i~~~~~V~~i~~~~~---~v~v~-~~g~~i~~D~viva~G~~p~~~-~l~l~~~~~~~ 267 (438)
T PRK07251 211 ------------------DGITFLLNAHTTEVKNDGD---QVLVV-TEDETYRFDALLYATGRKPNTE-PLGLENTDIEL 267 (438)
T ss_pred ------------------cCCEEEcCCEEEEEEecCC---EEEEE-ECCeEEEcCEEEEeeCCCCCcc-cCCchhcCcEE
Confidence 8999999999999986542 23333 4567899999999999999987 543 356777
Q ss_pred cCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC-cceeccceeeeeeeee
Q psy1545 289 APDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE-PVIQDFSFEMFTHMTK 367 (454)
Q Consensus 289 ~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~-~~~~~~~~~~~~~~~~ 367 (454)
+++|+|.||+++||+.|||||+|||++.+ ++.+.|..+|+.++.++++..... ..+..+|.. .
T Consensus 268 ~~~g~i~vd~~~~t~~~~IyaiGD~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~------~ 331 (438)
T PRK07251 268 TERGAIKVDDYCQTSVPGVFAVGDVNGGP----------QFTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTT------M 331 (438)
T ss_pred CCCCcEEECCCcccCCCCEEEeeecCCCc----------ccHhHHHHHHHHHHHHHcCCCCccccccCCCCEE------E
Confidence 78899999999999999999999998743 577889999999999998642110 111123333 3
Q ss_pred ecCeEEEEeecccCCcCCCCceEEE-----e-------ecCCccEEEEEE--ECCeEEEEEEEcCCc--hHHHHHHHHhc
Q psy1545 368 FFGYKVILLGLFNGQTLENDYEILL-----R-------VTRGEEYIKLVM--KDGRMQGAVLIGETE--IEEMCENLILN 431 (454)
Q Consensus 368 ~~~~~~~~vG~~~~~~~~~~~~~~~-----~-------~~~~~~~~k~~~--~~~~i~G~~~~g~~~--~~~~~~~~i~~ 431 (454)
+++++++.+|+++.++...+++... . .....+|+|+++ ++++|+|+|++|+.. .++.++.+|++
T Consensus 332 ~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~ 411 (438)
T PRK07251 332 FITPPLSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDN 411 (438)
T ss_pred ECCCceEeeeCCHHHHHhcCCCeEEEEEECCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHC
Confidence 4566999999998876543332111 1 112367999999 479999999999873 57899999999
Q ss_pred CCCcchhhhhc-cCCCCC
Q psy1545 432 QLDLTDIADDL-LNPNID 448 (454)
Q Consensus 432 ~~~~~~~~~~~-~~~~~~ 448 (454)
++|++++.+.+ .||+++
T Consensus 412 ~~t~~~l~~~~~~hPt~~ 429 (438)
T PRK07251 412 KIPYTYFKKQIFTHPTMA 429 (438)
T ss_pred CCCHHHHhcccccCCChH
Confidence 99999997755 366543
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=398.62 Aligned_cols=376 Identities=19% Similarity=0.257 Sum_probs=282.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc--------------------cc----ccch
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL--------------------LS----DITV 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~--------------------~~----~~~~ 57 (454)
+|||+|||||+||++||..|++. |.+|+|||++...+.|.+..+.+.. +. ..++
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~--g~~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 83 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATER--GARVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDR 83 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC--CCcEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCH
Confidence 48999999999999999999998 8899999998766655554321110 10 1111
Q ss_pred h------hhH--------H-HHHhc--CcEEEcceEEEEeCcccEEEeccCc--EEEecEEEEecCCCCCCCCCCC-cee
Q psy1545 58 E------ETD--------A-NKFEG--LCTVIVDTVAAIDPRVNCVITEKQN--RIKYKTLCICTGASPRKIWYSP-HVI 117 (454)
Q Consensus 58 ~------~~~--------~-~~~~~--~i~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lviAtG~~p~~~~~~~-~~~ 117 (454)
. ... . ..+.. +++++.++++.++++.+.|.+.+|. +++||+||||||++|+.|++++ .-.
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~ 163 (468)
T PRK14694 84 SALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLAET 163 (468)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCCCCC
Confidence 1 011 1 11222 7899999999999998888887763 7999999999999999998872 112
Q ss_pred eeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhh
Q psy1545 118 TIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPET 195 (454)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~ 195 (454)
.+.+.++...+.. .+++++|||+|++|+|+|..|. |.+|+++++ +++++. +++++...+.+.+.+
T Consensus 164 ~~~~~~~~~~l~~---~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~~~~l~~~l~~-------- 230 (468)
T PRK14694 164 PYLTSTSALELDH---IPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQ-EDPAVGEAIEAAFRR-------- 230 (468)
T ss_pred ceEcchhhhchhc---CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCC-CCHHHHHHHHHHHHh--------
Confidence 2344455554432 3799999999999999999886 999999987 456654 677777777777754
Q ss_pred hhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 196 IFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
.||++++++.+.+++.+++ .+.+.++++ ++++|.|++|+|++|
T Consensus 231 ---------------------------------~GI~v~~~~~v~~i~~~~~---~~~v~~~~~-~i~~D~vi~a~G~~p 273 (468)
T PRK14694 231 ---------------------------------EGIEVLKQTQASEVDYNGR---EFILETNAG-TLRAEQLLVATGRTP 273 (468)
T ss_pred ---------------------------------CCCEEEeCCEEEEEEEcCC---EEEEEECCC-EEEeCEEEEccCCCC
Confidence 8999999999999986542 344555444 699999999999999
Q ss_pred Cccccc--CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcc
Q psy1545 276 NSNIQV--HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPV 353 (454)
Q Consensus 276 ~~~~~~--~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~ 353 (454)
+.+ ++ ...+++. ++|+|.||+++||++|+|||+|||+..+ .+.+.|..||+.||.||++... +..
T Consensus 274 n~~-~l~l~~~g~~~-~~G~i~vd~~~~Ts~~~IyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~~~~~-~~~ 340 (468)
T PRK14694 274 NTE-NLNLESIGVET-ERGAIRIDEHLQTTVSGIYAAGDCTDQP----------QFVYVAAAGGSRAAINMTGGDA-SLD 340 (468)
T ss_pred CcC-CCCchhcCccc-CCCeEeeCCCcccCCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHhcCCCc-ccc
Confidence 998 64 3456665 5789999999999999999999998743 5678899999999999987532 112
Q ss_pred eeccceeeeeeeeeecCeEEEEeecccCCcCCCCceE--EE-e---------ecCCccEEEEEE--ECCeEEEEEEEcCC
Q psy1545 354 IQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEI--LL-R---------VTRGEEYIKLVM--KDGRMQGAVLIGET 419 (454)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~--~~-~---------~~~~~~~~k~~~--~~~~i~G~~~~g~~ 419 (454)
+..+|..+| ++++++++|+++.++...+++. .. . .....+|+|+++ ++++|||+|++|+.
T Consensus 341 ~~~~p~~~~------~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~ 414 (468)
T PRK14694 341 LSAMPEVIF------TDPQVATVGLSEAEAQAQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGE 414 (468)
T ss_pred cCCCCeEEE------CCCCeEEeeCCHHHHHHcCCceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCC
Confidence 223455444 4559999999998775433321 11 1 113468999999 58999999999987
Q ss_pred --chHHHHHHHHhcCCCcchhhhhcc-CCCCC
Q psy1545 420 --EIEEMCENLILNQLDLTDIADDLL-NPNID 448 (454)
Q Consensus 420 --~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~ 448 (454)
+.++.++.+|++++|++||.+..+ ||+++
T Consensus 415 a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 446 (468)
T PRK14694 415 AGELIQTAVMALRARMTVNEIADELFPYLTMV 446 (468)
T ss_pred HHHHHHHHHHHHHCCCCHHHHhccccCCCchH
Confidence 357899999999999999977664 76654
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-49 Score=396.55 Aligned_cols=380 Identities=18% Similarity=0.204 Sum_probs=280.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC---------Cccccccccccccccc--------------------
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS---------GIVKAVTKTVPVTKLL-------------------- 52 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~---------~~~~~~~~~~~~~~~~-------------------- 52 (454)
+||+||||||+||+.||..+++. |.+|++||+. ...+.|.++.+.+...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~--G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~ 79 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY--GAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWN 79 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcc
Confidence 58999999999999999999998 9999999973 2445555544332110
Q ss_pred ----cccchh--------------hhHHHHHhc-CcEEEcceEEEEeCcccEEEeccC--cEEEecEEEEecCCCCCCCC
Q psy1545 53 ----SDITVE--------------ETDANKFEG-LCTVIVDTVAAIDPRVNCVITEKQ--NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 53 ----~~~~~~--------------~~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lviAtG~~p~~~~ 111 (454)
...++. ......+.. +++++.+.+.+++++...|...++ ..++||+||||||++|+.|+
T Consensus 80 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~ 159 (484)
T TIGR01438 80 VEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPG 159 (484)
T ss_pred cCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCC
Confidence 001111 011112333 999999999999987655543343 37999999999999999998
Q ss_pred CCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccC
Q psy1545 112 YSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTN 189 (454)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~ 189 (454)
++..-....+.+++..+.. .+++++|||+|++|+|+|..|+ |.+||++++ +++++ .+|+++.+.+.+.|++
T Consensus 160 ipG~~~~~~~~~~~~~~~~---~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~-~~d~~~~~~l~~~L~~-- 232 (484)
T TIGR01438 160 IPGAKELCITSDDLFSLPY---CPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLR-GFDQDCANKVGEHMEE-- 232 (484)
T ss_pred CCCccceeecHHHhhcccc---cCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-ccccc-ccCHHHHHHHHHHHHH--
Confidence 8721111235555554432 3789999999999999999986 999999998 46665 4788888888877755
Q ss_pred CCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC---cEEecCE
Q psy1545 190 TAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG---HTHACDI 266 (454)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g---~~~~~D~ 266 (454)
.||++++++.+.+++..++ .+.++++++ +++++|.
T Consensus 233 ---------------------------------------~gV~i~~~~~v~~v~~~~~---~~~v~~~~~~~~~~i~~D~ 270 (484)
T TIGR01438 233 ---------------------------------------HGVKFKRQFVPIKVEQIEA---KVKVTFTDSTNGIEEEYDT 270 (484)
T ss_pred ---------------------------------------cCCEEEeCceEEEEEEcCC---eEEEEEecCCcceEEEeCE
Confidence 8999999999999886542 345666655 4799999
Q ss_pred EEEeeccCcCcccc--cCCCCceecC-CCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhh
Q psy1545 267 VVSAIGVVPNSNIQ--VHGTPFELAP-DCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKC 343 (454)
Q Consensus 267 vi~a~G~~p~~~~~--~~~~~l~~~~-~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~ 343 (454)
|++|+|++||++ + ++..++++++ +|+|.||+++||+.|+|||+|||+... .++++.|..||+.+|+|
T Consensus 271 vl~a~G~~pn~~-~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~GDv~~~~---------~~l~~~A~~~g~~aa~~ 340 (484)
T TIGR01438 271 VLLAIGRDACTR-KLNLENVGVKINKKTGKIPADEEEQTNVPYIYAVGDILEDK---------QELTPVAIQAGRLLAQR 340 (484)
T ss_pred EEEEecCCcCCC-cCCcccccceecCcCCeEecCCCcccCCCCEEEEEEecCCC---------ccchHHHHHHHHHHHHH
Confidence 999999999998 5 4566788765 489999999999999999999998632 35788899999999999
Q ss_pred hcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC----CceEEEe---e---------cCCccEEEEEE-E
Q psy1545 344 MVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN----DYEILLR---V---------TRGEEYIKLVM-K 406 (454)
Q Consensus 344 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~----~~~~~~~---~---------~~~~~~~k~~~-~ 406 (454)
|++.......+...|..+|+. ++++++|+++.++... .+..... . ..+.+|+|+++ +
T Consensus 341 i~~~~~~~~~~~~~p~~i~~~------p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~ 414 (484)
T TIGR01438 341 LFSGSTVICDYENVPTTVFTP------LEYGACGLSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNR 414 (484)
T ss_pred HhcCCCcccccccCCeEEeCC------CceeeecCCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEec
Confidence 987432111222345555544 4999999999776532 2222110 0 11458999998 3
Q ss_pred --CCeEEEEEEEcCC--chHHHHHHHHhcCCCcchhhhhc-cCCCCC
Q psy1545 407 --DGRMQGAVLIGET--EIEEMCENLILNQLDLTDIADDL-LNPNID 448 (454)
Q Consensus 407 --~~~i~G~~~~g~~--~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~ 448 (454)
+++|||+|++|+. +.++.++.+|++++|++||.+.. .||+++
T Consensus 415 ~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~dl~~~~~~hPt~s 461 (484)
T TIGR01438 415 KENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCA 461 (484)
T ss_pred CCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhhhcCCCChH
Confidence 7999999999986 46789999999999999998765 366654
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-49 Score=397.16 Aligned_cols=379 Identities=20% Similarity=0.237 Sum_probs=279.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-----------------------cccchh
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-----------------------SDITVE 58 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-----------------------~~~~~~ 58 (454)
.||++||||||||++||..|+++ |++|+|||++...+.|.++.+.+... ...++.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~--G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL--GLKTALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC--CCeEEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 48999999999999999999998 99999999987766666654332211 011111
Q ss_pred ------hh--------HHHHHhc-CcEEEcceEEEEeCc-------ccEEEeccC--cEEEecEEEEecCCCCCCCCCC-
Q psy1545 59 ------ET--------DANKFEG-LCTVIVDTVAAIDPR-------VNCVITEKQ--NRIKYKTLCICTGASPRKIWYS- 113 (454)
Q Consensus 59 ------~~--------~~~~~~~-~i~~~~~~v~~i~~~-------~~~v~~~~g--~~i~~d~lviAtG~~p~~~~~~- 113 (454)
+. ....+.+ +++++.+++++++++ ...|.+.+| .++.||+||||||++|+.++..
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~ 161 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLP 161 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCCCC
Confidence 00 1112334 899999999999988 666776666 4799999999999999765433
Q ss_pred -CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCC
Q psy1545 114 -PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNT 190 (454)
Q Consensus 114 -~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~ 190 (454)
... .+.+.+++..+.. .+++++|||+|++|+|+|..|+ |.+|+++++.+++++. +++++...+.+.+.+
T Consensus 162 ~~~~-~~~~~~~~~~~~~---~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~~~l~~~l~~--- 233 (472)
T PRK05976 162 FDGE-YVISSDEALSLET---LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELSKEVARLLKK--- 233 (472)
T ss_pred CCCc-eEEcchHhhCccc---cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHHHHHHHHHHh---
Confidence 222 2345555555433 3799999999999999999987 9999999999998875 577777777676654
Q ss_pred CChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEE
Q psy1545 191 AKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVV 268 (454)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi 268 (454)
.||++++++.+++++...+ +....+.+.+| +++++|.++
T Consensus 234 --------------------------------------~gI~i~~~~~v~~i~~~~~-~~~~~~~~~~g~~~~i~~D~vi 274 (472)
T PRK05976 234 --------------------------------------LGVRVVTGAKVLGLTLKKD-GGVLIVAEHNGEEKTLEADKVL 274 (472)
T ss_pred --------------------------------------cCCEEEeCcEEEEEEEecC-CCEEEEEEeCCceEEEEeCEEE
Confidence 8999999999999975111 11333445566 469999999
Q ss_pred EeeccCcCcccccC--CCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 269 SAIGVVPNSNIQVH--GTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 269 ~a~G~~p~~~~~~~--~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
+|+|++|+.+ .+. ..++.. .+|++.||+++||+.|+|||+|||+.. +++++.|..||+.||+||++
T Consensus 275 ~a~G~~p~~~-~l~l~~~~~~~-~~g~i~Vd~~l~ts~~~IyAiGD~~~~----------~~~~~~A~~~g~~aa~~i~g 342 (472)
T PRK05976 275 VSVGRRPNTE-GIGLENTDIDV-EGGFIQIDDFCQTKERHIYAIGDVIGE----------PQLAHVAMAEGEMAAEHIAG 342 (472)
T ss_pred EeeCCccCCC-CCCchhcCcee-cCCEEEECCCcccCCCCEEEeeecCCC----------cccHHHHHHHHHHHHHHHcC
Confidence 9999999987 543 334544 468999999999999999999999863 35788999999999999987
Q ss_pred CCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEE-----e-------ecCCccEEEEEE--ECCeEEE
Q psy1545 347 AVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILL-----R-------VTRGEEYIKLVM--KDGRMQG 412 (454)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~-----~-------~~~~~~~~k~~~--~~~~i~G 412 (454)
.......+...|. ..+++++++.+|+++.+++..+++... . .....+|+|+++ ++++|+|
T Consensus 343 ~~~~~~~~~~~p~------~~~~~p~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG 416 (472)
T PRK05976 343 KKPRPFDYAAIPA------CCYTDPEVASVGLTEEEAKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILG 416 (472)
T ss_pred CCCCCCCCCCCCE------EEECcCceEEEeCCHHHHHHcCCCEEEEEEECCcchhhhhcCCCceEEEEEEECCCCEEEE
Confidence 4211111111222 345566999999998776544332111 0 123578999999 4799999
Q ss_pred EEEEcCCc--hHHHHHHHHhcCCCcchhhhhc-cCCCC
Q psy1545 413 AVLIGETE--IEEMCENLILNQLDLTDIADDL-LNPNI 447 (454)
Q Consensus 413 ~~~~g~~~--~~~~~~~~i~~~~~~~~~~~~~-~~~~~ 447 (454)
+|++|+.. .++.+..+|++++|++|+.+.+ .||++
T Consensus 417 ~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~ 454 (472)
T PRK05976 417 VQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTL 454 (472)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCh
Confidence 99999873 4678899999999999997765 36654
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-49 Score=395.25 Aligned_cols=377 Identities=17% Similarity=0.198 Sum_probs=278.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC-Cccccccccccccc-------------------cc----cccch
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS-GIVKAVTKTVPVTK-------------------LL----SDITV 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~-~~~~~~~~~~~~~~-------------------~~----~~~~~ 57 (454)
++|++|||||+||+++|..|++. |.+|++||++ ...+.|.++.+.+. .+ ...++
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~--g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 93 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEH--GARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDR 93 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC--CCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCH
Confidence 58999999999999999999998 8999999997 44444444321110 00 01111
Q ss_pred hh----------h-----HHHHHhc--CcEEEcceEEEEeCcccEEEeccCc--EEEecEEEEecCCCCCCCCCCC-cee
Q psy1545 58 EE----------T-----DANKFEG--LCTVIVDTVAAIDPRVNCVITEKQN--RIKYKTLCICTGASPRKIWYSP-HVI 117 (454)
Q Consensus 58 ~~----------~-----~~~~~~~--~i~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lviAtG~~p~~~~~~~-~~~ 117 (454)
.. + +...+.. +++++.+++.+++.+...|.+.+|+ +++||+||||||++|+.|+++. ...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~ 173 (479)
T PRK14727 94 GLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLMDT 173 (479)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcCcc
Confidence 10 0 1111222 7899999999999877677766664 6999999999999999998872 111
Q ss_pred eeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhh
Q psy1545 118 TIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPET 195 (454)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~ 195 (454)
.+.+..+..... ..+++++|||+|++|+|+|..+. |.+|+++++. ++++. +|+++...+.+.+.+
T Consensus 174 ~~~~~~~~l~~~---~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~l~~~L~~-------- 240 (479)
T PRK14727 174 PYWTSTEALFSD---ELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLLGETLTACFEK-------- 240 (479)
T ss_pred ceecchHHhccc---cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHHHHHHHHHHHh--------
Confidence 223333333221 13799999999999999999986 9999999885 56654 677777777777654
Q ss_pred hhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 196 IFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
.||++++++.+++++.+++ .+.+..+++ ++++|.|++|+|++|
T Consensus 241 ---------------------------------~GV~i~~~~~V~~i~~~~~---~~~v~~~~g-~i~aD~VlvA~G~~p 283 (479)
T PRK14727 241 ---------------------------------EGIEVLNNTQASLVEHDDN---GFVLTTGHG-ELRAEKLLISTGRHA 283 (479)
T ss_pred ---------------------------------CCCEEEcCcEEEEEEEeCC---EEEEEEcCC-eEEeCEEEEccCCCC
Confidence 8999999999999986542 345555555 699999999999999
Q ss_pred Ccccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcc
Q psy1545 276 NSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPV 353 (454)
Q Consensus 276 ~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~ 353 (454)
++. + ++..+++++++|+|.||+++||++|||||+|||+..+ .+.+.|..||+.||.||++.... ..
T Consensus 284 n~~-~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~g~~~~-~~ 351 (479)
T PRK14727 284 NTH-DLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCSDLP----------QFVYVAAAAGSRAGINMTGGNAT-LD 351 (479)
T ss_pred Ccc-CCCchhhCceecCCCCEEECCCeecCCCCEEEeeecCCcc----------hhhhHHHHHHHHHHHHHcCCCcc-cc
Confidence 997 5 4556788888899999999999999999999999753 46778999999999999975321 11
Q ss_pred eeccceeeeeeeeeecCeEEEEeecccCCcCCCCceEE---Ee---------ecCCccEEEEEE--ECCeEEEEEEEcCC
Q psy1545 354 IQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEIL---LR---------VTRGEEYIKLVM--KDGRMQGAVLIGET 419 (454)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~---~~---------~~~~~~~~k~~~--~~~~i~G~~~~g~~ 419 (454)
....|+.+ +++++++.+|+++.++...+++.. .. .....+|+|+++ ++++|||+|++|+.
T Consensus 352 ~~~~p~~~------~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~ 425 (479)
T PRK14727 352 LSAMPAVI------FTDPQVATVGLSEAKAHLSGIETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHE 425 (479)
T ss_pred cccCCcEE------EecCceeeeeCCHHHHHHcCCceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCC
Confidence 22234434 445599999999887754333221 10 112468999999 48999999999988
Q ss_pred c--hHHHHHHHHhcCCCcchhhhhc-cCCCCC
Q psy1545 420 E--IEEMCENLILNQLDLTDIADDL-LNPNID 448 (454)
Q Consensus 420 ~--~~~~~~~~i~~~~~~~~~~~~~-~~~~~~ 448 (454)
. .++.+..+|++++|++||.+.. .||+++
T Consensus 426 a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 457 (479)
T PRK14727 426 GGELIQSAALAIHNRMTVEELADQLFPYLTMV 457 (479)
T ss_pred HHHHHHHHHHHHHcCCCHHHHhcCCccCCChH
Confidence 3 5789999999999999997665 366654
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=403.79 Aligned_cols=376 Identities=18% Similarity=0.241 Sum_probs=280.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc--------------------c----cccch
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL--------------------L----SDITV 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~--------------------~----~~~~~ 57 (454)
+||++||||||||++||..|++. |.+|+|||++...+.|.++.+.+.. + ...++
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~--G~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQ--GARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhC--CCeEEEEecCcceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 48999999999999999999998 8999999998666666554322110 0 01111
Q ss_pred hh---h------------HHHHHhc--CcEEEcceEEEEeCcccEEEeccCc--EEEecEEEEecCCCCCCCCCC--Cce
Q psy1545 58 EE---T------------DANKFEG--LCTVIVDTVAAIDPRVNCVITEKQN--RIKYKTLCICTGASPRKIWYS--PHV 116 (454)
Q Consensus 58 ~~---~------------~~~~~~~--~i~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lviAtG~~p~~~~~~--~~~ 116 (454)
.. + ....+.+ +++++.++++++++....|.+.+|+ .++||+||||||++|+.|+++ ...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~ 255 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKET 255 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCcc
Confidence 10 0 0111223 6899999999999887777766653 699999999999999999887 222
Q ss_pred eeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChh
Q psy1545 117 ITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPE 194 (454)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~ 194 (454)
.+.+..+..... ..+++++|||+|++|+|+|..|. |.+|+++++. .+++. +|+++...+.+.+.+
T Consensus 256 -~~~~~~~~~~~~---~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~~~~l~~~l~~------- 322 (561)
T PRK13748 256 -PYWTSTEALVSD---TIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFR-EDPAIGEAVTAAFRA------- 322 (561)
T ss_pred -ceEccHHHhhcc---cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHHHHHHHHHHHH-------
Confidence 233333333222 23799999999999999999987 9999999985 45554 688888877777755
Q ss_pred hhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccC
Q psy1545 195 TIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVV 274 (454)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~ 274 (454)
.||++++++.+++++.+++ .+.+.++++ ++++|.|++|+|++
T Consensus 323 ----------------------------------~gI~i~~~~~v~~i~~~~~---~~~v~~~~~-~i~~D~vi~a~G~~ 364 (561)
T PRK13748 323 ----------------------------------EGIEVLEHTQASQVAHVDG---EFVLTTGHG-ELRADKLLVATGRA 364 (561)
T ss_pred ----------------------------------CCCEEEcCCEEEEEEecCC---EEEEEecCC-eEEeCEEEEccCCC
Confidence 8999999999999986542 344555555 69999999999999
Q ss_pred cCcccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCc
Q psy1545 275 PNSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEP 352 (454)
Q Consensus 275 p~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~ 352 (454)
||.. + ++..+++++++|+|.||+++||+.|||||+|||+..+ .+.+.|..||++||.||++... ..
T Consensus 365 pn~~-~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~-~~ 432 (561)
T PRK13748 365 PNTR-SLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQP----------QFVYVAAAAGTRAAINMTGGDA-AL 432 (561)
T ss_pred cCCC-CcCchhcCceECCCCCEeECCCcccCCCCEEEeeecCCCc----------cchhHHHHHHHHHHHHHcCCCc-cc
Confidence 9997 5 4567888888999999999999999999999999753 5677899999999999986421 11
Q ss_pred ceeccceeeeeeeeeecCeEEEEeecccCCcCCCCce--EEE---e-------ecCCccEEEEEEE--CCeEEEEEEEcC
Q psy1545 353 VIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE--ILL---R-------VTRGEEYIKLVMK--DGRMQGAVLIGE 418 (454)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~---~-------~~~~~~~~k~~~~--~~~i~G~~~~g~ 418 (454)
.....|.. .+++++++++|+++.++...+++ ... . .....+|+|++++ +++|||+|++|+
T Consensus 433 ~~~~~p~~------~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~ 506 (561)
T PRK13748 433 DLTAMPAV------VFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAP 506 (561)
T ss_pred CCCCCCeE------EEccCCceeeeCCHHHHHHcCCCeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECC
Confidence 11123333 35566999999999776543322 111 1 1134689999993 899999999998
Q ss_pred Cc--hHHHHHHHHhcCCCcchhhhhcc-CCCCC
Q psy1545 419 TE--IEEMCENLILNQLDLTDIADDLL-NPNID 448 (454)
Q Consensus 419 ~~--~~~~~~~~i~~~~~~~~~~~~~~-~~~~~ 448 (454)
.. .++.+..+|++++|+++|.+.++ ||+++
T Consensus 507 ~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~ 539 (561)
T PRK13748 507 EAGELIQTAALAIRNRMTVQELADQLFPYLTMV 539 (561)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHhcccccCCchH
Confidence 74 57888999999999999977664 66654
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=398.70 Aligned_cols=380 Identities=17% Similarity=0.227 Sum_probs=279.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC--Cccccccccccccccc----------------------c----
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS--GIVKAVTKTVPVTKLL----------------------S---- 53 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~--~~~~~~~~~~~~~~~~----------------------~---- 53 (454)
+||++|||+|++|+.||..++++ |.+|+|||+. ...+.|.++.+.+... .
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~--G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~ 193 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMER--GLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAF 193 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccc
Confidence 47999999999999999999998 9999999975 5566666654332110 0
Q ss_pred ------------------ccchhh--------------hHHHHHhc-C-------cEEEcceEEEEeCcccEEEeccCcE
Q psy1545 54 ------------------DITVEE--------------TDANKFEG-L-------CTVIVDTVAAIDPRVNCVITEKQNR 93 (454)
Q Consensus 54 ------------------~~~~~~--------------~~~~~~~~-~-------i~~~~~~v~~i~~~~~~v~~~~g~~ 93 (454)
..++.. .....+.+ + ++++.+...+++++...+. .++++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~-~~g~~ 272 (659)
T PTZ00153 194 KNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE-KSGKE 272 (659)
T ss_pred cccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEc-cCCEE
Confidence 011110 01111222 2 7888888888887654443 35678
Q ss_pred EEecEEEEecCCCCCCCCCC-CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccc
Q psy1545 94 IKYKTLCICTGASPRKIWYS-PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISA 170 (454)
Q Consensus 94 i~~d~lviAtG~~p~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~ 170 (454)
+.||+||||||++|+.|+++ .....+.+.+++..+... +++++|||+|++|+|+|..+. |.+||++++.+++++
T Consensus 273 i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~l---pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~ 349 (659)
T PTZ00153 273 FKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGL---QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP 349 (659)
T ss_pred EECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhc---CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence 99999999999999988754 122234566777666543 899999999999999999886 999999999999988
Q ss_pred cccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCcc
Q psy1545 171 TFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTC 250 (454)
Q Consensus 171 ~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~ 250 (454)
. +|+++...+.+.+. ++.||++++++.|++++..++ ..
T Consensus 350 ~-~d~eis~~l~~~ll----------------------------------------~~~GV~I~~~~~V~~I~~~~~-~~ 387 (659)
T PTZ00153 350 L-LDADVAKYFERVFL----------------------------------------KSKPVRVHLNTLIEYVRAGKG-NQ 387 (659)
T ss_pred c-CCHHHHHHHHHHHh----------------------------------------hcCCcEEEcCCEEEEEEecCC-ce
Confidence 4 78888777766642 237999999999999986542 12
Q ss_pred ceEEEecC-------C--------cEEecCEEEEeeccCcCccccc--CCCCceecCCCceEeccccccc------cCce
Q psy1545 251 NAYVKLTN-------G--------HTHACDIVVSAIGVVPNSNIQV--HGTPFELAPDCGIGVNELMQTS------ISNV 307 (454)
Q Consensus 251 ~~~v~~~~-------g--------~~~~~D~vi~a~G~~p~~~~~~--~~~~l~~~~~g~i~vd~~~~t~------~~~I 307 (454)
.+.+.+.+ + +++++|.|++|+|++||++ .+ +..++.++ +|+|.||++|||+ +|+|
T Consensus 388 ~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~-~L~l~~~gi~~~-~G~I~VDe~lqTs~~~~~~v~~I 465 (659)
T PTZ00153 388 PVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTN-NLGLDKLKIQMK-RGFVSVDEHLRVLREDQEVYDNI 465 (659)
T ss_pred EEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCc-cCCchhcCCccc-CCEEeECCCCCcCCCCCCCCCCE
Confidence 24454421 1 3799999999999999998 64 45567765 5899999999997 6999
Q ss_pred eecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCC------------CcceeccceeeeeeeeeecCeEEEE
Q psy1545 308 YAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKN------------EPVIQDFSFEMFTHMTKFFGYKVIL 375 (454)
Q Consensus 308 ya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (454)
||+|||++. +++++.|..||+++|+||++.... ...+..+|..+|+. +++++
T Consensus 466 YAiGDv~g~----------~~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~------PeiA~ 529 (659)
T PTZ00153 466 FCIGDANGK----------QMLAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTT------PELAF 529 (659)
T ss_pred EEEEecCCC----------ccCHHHHHHHHHHHHHHHcCCCccccccccccccccccccCcCCEEEECc------CceEE
Confidence 999999863 368899999999999999975210 01122344444544 49999
Q ss_pred eecccCCcCCCC----ceE---EEee-----------------------------cCCccEEEEEE--ECCeEEEEEEEc
Q psy1545 376 LGLFNGQTLEND----YEI---LLRV-----------------------------TRGEEYIKLVM--KDGRMQGAVLIG 417 (454)
Q Consensus 376 vG~~~~~~~~~~----~~~---~~~~-----------------------------~~~~~~~k~~~--~~~~i~G~~~~g 417 (454)
||+++.++...+ +.+ .+.. +...+|+|+++ ++++|||+|++|
T Consensus 530 VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG 609 (659)
T PTZ00153 530 IGLTEKEAKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVG 609 (659)
T ss_pred eeCCHHHHHhcCCCcceEEEEEEecccchhhhccccccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEEC
Confidence 999998765432 111 1110 01578999999 589999999999
Q ss_pred CCc--hHHHHHHHHhcCCCcchhhhhcc-CCCC
Q psy1545 418 ETE--IEEMCENLILNQLDLTDIADDLL-NPNI 447 (454)
Q Consensus 418 ~~~--~~~~~~~~i~~~~~~~~~~~~~~-~~~~ 447 (454)
++. .++.++.+|++++|++||.+.++ ||++
T Consensus 610 ~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~ 642 (659)
T PTZ00153 610 SYASILIHEGVLAINLKLSVKDLAHMVHSHPTI 642 (659)
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCh
Confidence 984 57889999999999999977763 5554
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=392.14 Aligned_cols=374 Identities=18% Similarity=0.255 Sum_probs=278.8
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-------------------c------ccchh
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-------------------S------DITVE 58 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-------------------~------~~~~~ 58 (454)
+++|||||+||++||..+++. |.+|+|||+++..+.|.++.+.+... . ..++.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~--g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 79 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN--GKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWK 79 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC--CCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHH
Confidence 899999999999999999998 99999999998887777654332100 0 01111
Q ss_pred h------h-------HHHH-Hhc-CcEEEcceEEEEeCcccEEEeccC-cEEEecEEEEecCCCCCCCCCCC-ceeeeec
Q psy1545 59 E------T-------DANK-FEG-LCTVIVDTVAAIDPRVNCVITEKQ-NRIKYKTLCICTGASPRKIWYSP-HVITIRD 121 (454)
Q Consensus 59 ~------~-------~~~~-~~~-~i~~~~~~v~~i~~~~~~v~~~~g-~~i~~d~lviAtG~~p~~~~~~~-~~~~~~~ 121 (454)
. . ..+. +.. +++++.+++.+++++...|...++ .+++||+||||||++|+.|++++ ....+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~~~v~~ 159 (458)
T PRK06912 80 QMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIIN 159 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCCCeEEc
Confidence 0 0 0111 223 899999999999987767765455 37999999999999998877651 1122345
Q ss_pred cchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhh
Q psy1545 122 TDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKR 199 (454)
Q Consensus 122 ~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~ 199 (454)
..++..+.+ .+++++|||+|++|+|+|..+. |.+|+++++.+++++. +++++.+.+.+.+.+
T Consensus 160 ~~~~~~~~~---~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~------------ 223 (458)
T PRK06912 160 SKHAMSLPS---IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLEN------------ 223 (458)
T ss_pred chHHhCccc---cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHH------------
Confidence 555555443 3799999999999999999886 9999999999998875 577777777766654
Q ss_pred cccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEEEeeccCcCc
Q psy1545 200 MRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 200 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi~a~G~~p~~ 277 (454)
.||++++++.+++++.++. .+.+.. +| .++++|.|++|+|++|+.
T Consensus 224 -----------------------------~GI~i~~~~~V~~i~~~~~---~v~~~~-~g~~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 224 -----------------------------DGVKIFTGAALKGLNSYKK---QALFEY-EGSIQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred -----------------------------CCCEEEECCEEEEEEEcCC---EEEEEE-CCceEEEEeCEEEEecCCccCC
Confidence 8999999999999976542 233332 34 469999999999999998
Q ss_pred cccc--CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCccee
Q psy1545 278 NIQV--HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQ 355 (454)
Q Consensus 278 ~~~~--~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~ 355 (454)
+ .+ +..++.++++| |.||+++||+.|||||+|||+.. +++++.|..||+.||.||++... ...+.
T Consensus 271 ~-~l~l~~~gv~~~~~g-i~Vd~~~~ts~~~VyA~GD~~~~----------~~la~~A~~~g~~aa~~~~g~~~-~~~~~ 337 (458)
T PRK06912 271 Q-QLNLEKAGVQFSNKG-ISVNEHMQTNVPHIYACGDVIGG----------IQLAHVAFHEGTTAALHASGEDV-KVNYH 337 (458)
T ss_pred C-CCCchhcCceecCCC-EEeCCCeecCCCCEEEEeecCCC----------cccHHHHHHHHHHHHHHHcCCCC-CCCcC
Confidence 7 54 45577776655 99999999999999999999863 36888999999999999987421 11122
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEEe------------ecCCccEEEEEE--ECCeEEEEEEEcCCc-
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLR------------VTRGEEYIKLVM--KDGRMQGAVLIGETE- 420 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~------------~~~~~~~~k~~~--~~~~i~G~~~~g~~~- 420 (454)
.+|..+|+ +++++.+|+++.++.....+.... .....+|+|+++ ++++|+|+|++|+..
T Consensus 338 ~~p~~v~~------~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~ 411 (458)
T PRK06912 338 AVPRCIYT------SPEIASVGLTEKQAREQYGDIRIGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRAT 411 (458)
T ss_pred CCCeEEec------CchhEEeeCCHHHHHHCCCCeEEEEEecCcchhHhhcCCCceEEEEEEECCCCEEEEEEEECCCHH
Confidence 34444444 448999999997765433221110 112468999999 489999999999873
Q ss_pred -hHHHHHHHHhcCCCcchhhhhcc-CCCC
Q psy1545 421 -IEEMCENLILNQLDLTDIADDLL-NPNI 447 (454)
Q Consensus 421 -~~~~~~~~i~~~~~~~~~~~~~~-~~~~ 447 (454)
.++.++.+|++++|++|+.+.++ ||++
T Consensus 412 e~i~~~~~ai~~~~t~~~l~~~~~~hPt~ 440 (458)
T PRK06912 412 ELIGQGTVMIHTEVTADIMEDFIAAHPTL 440 (458)
T ss_pred HHHHHHHHHHHCCCCHHHHhhCcccCCCH
Confidence 56888999999999999987742 5543
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=392.43 Aligned_cols=378 Identities=20% Similarity=0.249 Sum_probs=277.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECC-------CCcccccccccccccc--------------------cc-
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTP-------SGIVKAVTKTVPVTKL--------------------LS- 53 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~-------~~~~~~~~~~~~~~~~--------------------~~- 53 (454)
+||++|||||+||++||..+++. +.+|+|||+ ....+.|.++.+.+.. ..
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~--g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~ 81 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQL--GLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHV 81 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhC--CCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccC
Confidence 58999999999999999999998 899999998 4444445444332210 00
Q ss_pred ---ccchh---h----------hHHHH-Hhc-CcEEEcceEEEEeCc--ccEEEec--cCcEEEecEEEEecCCCCCCCC
Q psy1545 54 ---DITVE---E----------TDANK-FEG-LCTVIVDTVAAIDPR--VNCVITE--KQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 54 ---~~~~~---~----------~~~~~-~~~-~i~~~~~~v~~i~~~--~~~v~~~--~g~~i~~d~lviAtG~~p~~~~ 111 (454)
..++. . ..... +.. +++++.+++.+++.. ..+|.+. ++++++||+||||||++|+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p 161 (475)
T PRK06327 82 DGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLP 161 (475)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCC
Confidence 00110 0 01111 223 899999999888732 3456553 3458999999999999997655
Q ss_pred CC-CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhcc
Q psy1545 112 YS-PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKT 188 (454)
Q Consensus 112 ~~-~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~ 188 (454)
.. .....+.+.+++..+.. .+++++|||+|++|+|+|..+. |.+||++++++++++. +++++...+.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~---~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~- 236 (475)
T PRK06327 162 GVPFDNKIILDNTGALNFTE---VPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQVAKEAAKAFTK- 236 (475)
T ss_pred CCCCCCceEECcHHHhcccc---cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCHHHHHHHHHHHHH-
Confidence 33 11122345455544432 3899999999999999999886 9999999999988874 577777777776654
Q ss_pred CCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC--C--cEEec
Q psy1545 189 NTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN--G--HTHAC 264 (454)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~--g--~~~~~ 264 (454)
.||+++++++|++++.+++ .+.+.+.+ | +++++
T Consensus 237 ----------------------------------------~gi~i~~~~~v~~i~~~~~---~v~v~~~~~~g~~~~i~~ 273 (475)
T PRK06327 237 ----------------------------------------QGLDIHLGVKIGEIKTGGK---GVSVAYTDADGEAQTLEV 273 (475)
T ss_pred ----------------------------------------cCcEEEeCcEEEEEEEcCC---EEEEEEEeCCCceeEEEc
Confidence 8999999999999987642 34555544 3 57999
Q ss_pred CEEEEeeccCcCccccc--CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHh
Q psy1545 265 DIVVSAIGVVPNSNIQV--HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAK 342 (454)
Q Consensus 265 D~vi~a~G~~p~~~~~~--~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~ 342 (454)
|.|++|+|++|+.+ ++ +..++.++++|+|.||+++||+.|+|||+|||+..+ ++++.|..||+.||.
T Consensus 274 D~vl~a~G~~p~~~-~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~VyA~GD~~~~~----------~~~~~A~~~G~~aa~ 342 (475)
T PRK06327 274 DKLIVSIGRVPNTD-GLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGP----------MLAHKAEEEGVAVAE 342 (475)
T ss_pred CEEEEccCCccCCC-CCCcHhhCceeCCCCeEeECCCCccCCCCEEEEEeccCCc----------chHHHHHHHHHHHHH
Confidence 99999999999987 43 456788888999999999999999999999998743 578899999999999
Q ss_pred hhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEE-----e-------ecCCccEEEEEE--ECC
Q psy1545 343 CMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILL-----R-------VTRGEEYIKLVM--KDG 408 (454)
Q Consensus 343 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~-----~-------~~~~~~~~k~~~--~~~ 408 (454)
||++... +..+..+|..+| ++++++.+|+++.++...+++... . .....+|+|+++ +++
T Consensus 343 ~i~g~~~-~~~~~~~p~~~~------~~pe~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~ 415 (475)
T PRK06327 343 RIAGQKG-HIDYNTIPWVIY------TSPEIAWVGKTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTD 415 (475)
T ss_pred HHcCCCC-CCCCCCCCeEEe------CCcceEEEeCCHHHHHHcCCCEEEEEEcccccchhhhcCCCCeEEEEEEECCCC
Confidence 9987432 111222344444 355999999998776543332111 0 123468999999 489
Q ss_pred eEEEEEEEcCCc--hHHHHHHHHhcCCCcchhhhhc-cCCCC
Q psy1545 409 RMQGAVLIGETE--IEEMCENLILNQLDLTDIADDL-LNPNI 447 (454)
Q Consensus 409 ~i~G~~~~g~~~--~~~~~~~~i~~~~~~~~~~~~~-~~~~~ 447 (454)
+|+|+|++|+.. .++.+..+|++++|++||.+.+ .||++
T Consensus 416 ~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~ 457 (475)
T PRK06327 416 EILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTL 457 (475)
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCCcCCCCh
Confidence 999999999873 5688899999999999997764 36654
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=393.48 Aligned_cols=378 Identities=23% Similarity=0.283 Sum_probs=275.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc-------------------c----cccch-
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL-------------------L----SDITV- 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~-------------------~----~~~~~- 57 (454)
+||+||||||+||++||..|++. |.+|+|||++...+.|.++.+.+.. + ...++
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 80 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL--GKKVALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFK 80 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHH
Confidence 68999999999999999999998 8999999996555544433221100 0 01111
Q ss_pred --hh---hHH--------HH-Hhc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCC-CCCCCCCC-ceeeee
Q psy1545 58 --EE---TDA--------NK-FEG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGAS-PRKIWYSP-HVITIR 120 (454)
Q Consensus 58 --~~---~~~--------~~-~~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~-p~~~~~~~-~~~~~~ 120 (454)
.. ... .. +.. +++++.+++..++... +.+ +++++.||+||||||++ |..|.... ....+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~--v~v-~~~~~~~d~lIiATGs~~p~ipg~~~~~~~~~~ 157 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNT--VEV-NGERIEAKNIVIATGSRVPPIPGVWLILGDRLL 157 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCE--EEE-CcEEEEeCEEEEeCCCCCCCCCCCcccCCCcEE
Confidence 00 000 11 222 7888888888887654 444 67789999999999999 55444321 122334
Q ss_pred ccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhh
Q psy1545 121 DTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFK 198 (454)
Q Consensus 121 ~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~ 198 (454)
+.++...+.. .+++++|||+|++|+|+|..|. |.+|+++++.+++++. +|+++...+.+.+.+
T Consensus 158 ~~~~~~~~~~---~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~----------- 222 (460)
T PRK06292 158 TSDDAFELDK---LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-EDPEVSKQAQKILSK----------- 222 (460)
T ss_pred CchHHhCccc---cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-hhHHHHHHHHHHHhh-----------
Confidence 5555554433 3899999999999999999886 9999999999998874 678777777777654
Q ss_pred hcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEEEeeccCcC
Q psy1545 199 RMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPN 276 (454)
Q Consensus 199 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi~a~G~~p~ 276 (454)
. |++++++.+.+++.+++ ..+.+++.++ +++++|.|++|+|++|+
T Consensus 223 ------------------------------~-I~i~~~~~v~~i~~~~~--~~v~~~~~~~~~~~i~~D~vi~a~G~~p~ 269 (460)
T PRK06292 223 ------------------------------E-FKIKLGAKVTSVEKSGD--EKVEELEKGGKTETIEADYVLVATGRRPN 269 (460)
T ss_pred ------------------------------c-cEEEcCCEEEEEEEcCC--ceEEEEEcCCceEEEEeCEEEEccCCccC
Confidence 7 99999999999986542 1233433333 57999999999999999
Q ss_pred cccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcce
Q psy1545 277 SNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVI 354 (454)
Q Consensus 277 ~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~ 354 (454)
.+ . ++..+++++++|+|.||+++||+.|||||+|||+..+ ++++.|..||++||.||++........
T Consensus 270 ~~-~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~~~~----------~~~~~A~~qg~~aa~~i~~~~~~~~~~ 338 (460)
T PRK06292 270 TD-GLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKP----------PLLHEAADEGRIAAENAAGDVAGGVRY 338 (460)
T ss_pred CC-CCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEecCCCc----------cchhHHHHHHHHHHHHhcCCCCCCcCC
Confidence 98 4 4556788888899999999999999999999998743 578899999999999998742111112
Q ss_pred eccceeeeeeeeeecCeEEEEeecccCCcCCCCce--EEEe----------ecCCccEEEEEE--ECCeEEEEEEEcCCc
Q psy1545 355 QDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE--ILLR----------VTRGEEYIKLVM--KDGRMQGAVLIGETE 420 (454)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~~----------~~~~~~~~k~~~--~~~~i~G~~~~g~~~ 420 (454)
..+|..+|+. ++++++|+++.++...+++ .... .....+|+|+++ ++++|+|+|++|+..
T Consensus 339 ~~~p~~~~~~------~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a 412 (460)
T PRK06292 339 HPIPSVVFTD------PQIASVGLTEEELKAAGIDYVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDA 412 (460)
T ss_pred CCCCeEEECC------CccEEeECCHHHHHhcCCCeEEEEEecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCH
Confidence 2344445544 4899999999876543332 1110 123578999999 479999999999983
Q ss_pred --hHHHHHHHHhcCCCcchhhhhccCCCCCCC
Q psy1545 421 --IEEMCENLILNQLDLTDIADDLLNPNIDID 450 (454)
Q Consensus 421 --~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 450 (454)
.++.++.+|++++|++|+.+..+ |++++.
T Consensus 413 ~e~i~~~~~ai~~~~t~~~l~~~~~-~hPt~~ 443 (460)
T PRK06292 413 EHLIHLLAWAMQQGLTVEDLLRMPF-YHPTLS 443 (460)
T ss_pred HHHHHHHHHHHHCCCCHHHHhhCcc-CCCCHH
Confidence 57899999999999999988764 444443
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-48 Score=388.40 Aligned_cols=379 Identities=18% Similarity=0.183 Sum_probs=276.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC---------Ccccccccccccccc--------------------c
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS---------GIVKAVTKTVPVTKL--------------------L 52 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~---------~~~~~~~~~~~~~~~--------------------~ 52 (454)
+||++||||||||++||..++++ |.+|+|||+. ...+.|.++.+.+.. +
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~--G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~ 82 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAH--GKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGW 82 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC--CCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCC
Confidence 38999999999999999999998 9999999963 244455554333210 0
Q ss_pred c---ccch---hh---hHH--------HHHhc-CcEEEcceEEEEeCcccEEEecc-CcEEEecEEEEecCCCCCCCC-C
Q psy1545 53 S---DITV---EE---TDA--------NKFEG-LCTVIVDTVAAIDPRVNCVITEK-QNRIKYKTLCICTGASPRKIW-Y 112 (454)
Q Consensus 53 ~---~~~~---~~---~~~--------~~~~~-~i~~~~~~v~~i~~~~~~v~~~~-g~~i~~d~lviAtG~~p~~~~-~ 112 (454)
. ..++ .+ ... ..+.. +++++.+++.+.+.....+...+ +..++||+||||||++|+.|+ +
T Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i 162 (499)
T PTZ00052 83 KTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDV 162 (499)
T ss_pred CCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCC
Confidence 0 0111 10 111 11122 88889998888765543333212 347999999999999999874 6
Q ss_pred CCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCC
Q psy1545 113 SPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNT 190 (454)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~ 190 (454)
+.......+.+++..+.+ .+++++|||+|++|+|+|..|+ |.+||++++. .+++ .+|+++.+.+.+.+.+
T Consensus 163 ~G~~~~~~~~~~~~~~~~---~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~-~~d~~~~~~l~~~l~~--- 234 (499)
T PTZ00052 163 PGAKEYSITSDDIFSLSK---DPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLR-GFDRQCSEKVVEYMKE--- 234 (499)
T ss_pred CCccceeecHHHHhhhhc---CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-cccc-cCCHHHHHHHHHHHHH---
Confidence 621112345555555433 3789999999999999999986 9999999974 5554 3788888887777755
Q ss_pred CChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEe
Q psy1545 191 AKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSA 270 (454)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a 270 (454)
.||++++++.+.+++..++ ...+.+.+|+++++|.|+++
T Consensus 235 --------------------------------------~GV~i~~~~~v~~v~~~~~---~~~v~~~~g~~i~~D~vl~a 273 (499)
T PTZ00052 235 --------------------------------------QGTLFLEGVVPINIEKMDD---KIKVLFSDGTTELFDTVLYA 273 (499)
T ss_pred --------------------------------------cCCEEEcCCeEEEEEEcCC---eEEEEECCCCEEEcCEEEEe
Confidence 8999999999999886542 35577788888999999999
Q ss_pred eccCcCccccc--CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 271 IGVVPNSNIQV--HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 271 ~G~~p~~~~~~--~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
+|++||++ ++ +..+++++++|++.+++. ||+.|+|||+|||+... +++++.|.+||+.+|+||++..
T Consensus 274 ~G~~pn~~-~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~IyAiGDv~~~~---------~~l~~~A~~~g~~aa~ni~g~~ 342 (499)
T PTZ00052 274 TGRKPDIK-GLNLNAIGVHVNKSNKIIAPND-CTNIPNIFAVGDVVEGR---------PELTPVAIKAGILLARRLFKQS 342 (499)
T ss_pred eCCCCCcc-ccCchhcCcEECCCCCEeeCCC-cCCCCCEEEEEEecCCC---------cccHHHHHHHHHHHHHHHhCCC
Confidence 99999998 65 466788888898777777 99999999999998632 3578999999999999998753
Q ss_pred CCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC----CceEEE------------ee-----c--------CCcc
Q psy1545 349 KNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN----DYEILL------------RV-----T--------RGEE 399 (454)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~----~~~~~~------------~~-----~--------~~~~ 399 (454)
.....+..+|..+|+.+ ++++||+++.++... .+.... +. . ...+
T Consensus 343 ~~~~~~~~~p~~ift~p------~ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 416 (499)
T PTZ00052 343 NEFIDYTFIPTTIFTPI------EYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNC 416 (499)
T ss_pred CCcCccccCCeEEecCC------cceeecCCHHHHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCc
Confidence 22222233455555554 899999998876532 121110 00 0 1468
Q ss_pred EEEEEE-E--CCeEEEEEEEcCC--chHHHHHHHHhcCCCcchhhhhc-cCCCCC
Q psy1545 400 YIKLVM-K--DGRMQGAVLIGET--EIEEMCENLILNQLDLTDIADDL-LNPNID 448 (454)
Q Consensus 400 ~~k~~~-~--~~~i~G~~~~g~~--~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~ 448 (454)
|+|+++ + +++|+|+|++|++ +.++.++.+|++++|+++|.+.+ .||+++
T Consensus 417 ~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPt~s 471 (499)
T PTZ00052 417 LAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDA 471 (499)
T ss_pred eEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCCCc
Confidence 999999 3 6999999999988 36789999999999999997765 355443
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=386.64 Aligned_cols=381 Identities=21% Similarity=0.286 Sum_probs=284.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc--------------c---------ccchh
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL--------------S---------DITVE 58 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~--------------~---------~~~~~ 58 (454)
.|||+|||||+||++||..|++. |.+|+|||+....+.|.++.+.+... . ..++.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~--G~~v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 78 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQL--GLKVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWE 78 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHH
Confidence 38999999999999999999998 99999999966556555543322100 0 00100
Q ss_pred h------h--------HHHHHhc-CcEEEcceEEEEeCcccEEEeccC-cEEEecEEEEecCCCCCCCCCC-C-ceeeee
Q psy1545 59 E------T--------DANKFEG-LCTVIVDTVAAIDPRVNCVITEKQ-NRIKYKTLCICTGASPRKIWYS-P-HVITIR 120 (454)
Q Consensus 59 ~------~--------~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g-~~i~~d~lviAtG~~p~~~~~~-~-~~~~~~ 120 (454)
. . ....+.+ +++++.+++.++++....+...++ ..+.||+||||||++|+.|+++ + ....+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~~ 158 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGEVVI 158 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCCceEE
Confidence 0 0 0011223 899999999998877766665454 4799999999999999888764 1 111345
Q ss_pred ccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhh
Q psy1545 121 DTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFK 198 (454)
Q Consensus 121 ~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~ 198 (454)
+.++...+.. .+++++|||+|.+|+|+|..+. |.+|+++++.+++++. +++++...+.+.+.+
T Consensus 159 ~~~~~~~~~~---~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~----------- 223 (461)
T TIGR01350 159 TSTGALNLKE---VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-EDAEVSKVVAKALKK----------- 223 (461)
T ss_pred cchHHhcccc---CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-CCHHHHHHHHHHHHH-----------
Confidence 6666655443 3799999999999999999986 9999999999998874 677777777766654
Q ss_pred hcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEEEeeccCcC
Q psy1545 199 RMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPN 276 (454)
Q Consensus 199 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi~a~G~~p~ 276 (454)
.||++++++.+.+++.+++ .+.+.+.+| +++++|.+++|+|++|+
T Consensus 224 ------------------------------~gi~i~~~~~v~~i~~~~~---~v~v~~~~g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 224 ------------------------------KGVKILTNTKVTAVEKNDD---QVVYENKGGETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred ------------------------------cCCEEEeCCEEEEEEEeCC---EEEEEEeCCcEEEEEeCEEEEecCCccc
Confidence 8999999999999986542 355666667 57999999999999999
Q ss_pred cc-cccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCccee
Q psy1545 277 SN-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQ 355 (454)
Q Consensus 277 ~~-~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~ 355 (454)
.+ .+++..++.++.+|+|.||+++||+.|+|||+|||+.. +++++.|..||+.+|+||.+.........
T Consensus 271 ~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~~~----------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~ 340 (461)
T TIGR01350 271 TEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDVIGG----------PMLAHVASHEGIVAAENIAGKEPAPIDYD 340 (461)
T ss_pred CCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeecCCC----------cccHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 86 13566678888889999999999999999999999874 35788999999999999997532111111
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCCCceE--EEe----------ecCCccEEEEEE--ECCeEEEEEEEcCCc-
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEI--LLR----------VTRGEEYIKLVM--KDGRMQGAVLIGETE- 420 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~--~~~----------~~~~~~~~k~~~--~~~~i~G~~~~g~~~- 420 (454)
..|. ..+++.+++.+|+++.++...+++. ... .....+|+|+++ ++++|+|+|++|+..
T Consensus 341 ~~~~------~~~~~~~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~ 414 (461)
T TIGR01350 341 AVPS------CIYTDPEVASVGLTEEQAKEAGYDVKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHAT 414 (461)
T ss_pred CCCe------EEecCCceEEEeCCHHHHHhCCCCeEEEEEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHH
Confidence 2222 3345669999999987765433321 111 123568999999 479999999999873
Q ss_pred -hHHHHHHHHhcCCCcchhhhhc-cCCCCC
Q psy1545 421 -IEEMCENLILNQLDLTDIADDL-LNPNID 448 (454)
Q Consensus 421 -~~~~~~~~i~~~~~~~~~~~~~-~~~~~~ 448 (454)
.++.++.+|++++|++|+.+.+ .+|+++
T Consensus 415 e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~ 444 (461)
T TIGR01350 415 ELISEAVLAMELELTVEELAKTIHPHPTLS 444 (461)
T ss_pred HHHHHHHHHHHCCCCHHHHhcCcccCCCHH
Confidence 5789999999999999998865 366543
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-47 Score=399.29 Aligned_cols=377 Identities=22% Similarity=0.290 Sum_probs=305.0
Q ss_pred EEEECCCHHHHHHHHHHhhcC-CCCeEEEECCCCcccccccccccccccc----ccchhhhHHHHHhc-CcEEEcc-eEE
Q psy1545 5 YLIIGGGIAGVSCVEGLAFLH-PGESIGLVTPSGIVKAVTKTVPVTKLLS----DITVEETDANKFEG-LCTVIVD-TVA 77 (454)
Q Consensus 5 vvIIGgG~aGl~aA~~l~~~~-~g~~v~lie~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~i~~~~~-~v~ 77 (454)
|||||||+||+++|..|+++. ++.+|+||++++++.+ +++.++..+. ..++.....+++.+ +++++.+ +|+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y--~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~ 78 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNY--NRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVI 78 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCc--ccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEE
Confidence 689999999999999999875 4679999999998753 3332322221 11222233455666 9999876 899
Q ss_pred EEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHH
Q psy1545 78 AIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHE 153 (454)
Q Consensus 78 ~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~ 153 (454)
.++++++.|.+.+|.++.||+||||||++|+.|++| ++++.+++.+++..+.+....+++++|||+|++|+|+|..
T Consensus 79 ~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~ 158 (785)
T TIGR02374 79 QIDTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVG 158 (785)
T ss_pred EEECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHH
Confidence 999999999998888999999999999999999887 4678888889998888877788999999999999999999
Q ss_pred hc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCce
Q psy1545 154 LS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKI 231 (454)
Q Consensus 154 l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv 231 (454)
|. |.+|+++++.++++++.+++.....+.+.+.+ .||
T Consensus 159 L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~-----------------------------------------~GV 197 (785)
T TIGR02374 159 LQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQ-----------------------------------------KGL 197 (785)
T ss_pred HHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHH-----------------------------------------cCC
Confidence 97 99999999999998877888888888777755 899
Q ss_pred EEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCceeecC
Q psy1545 232 TIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAG 311 (454)
Q Consensus 232 ~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~G 311 (454)
++++++.++++..++ ....+.+++|+++++|.||+++|++|+.+ ++...+++++ |+|.||++|||+.|||||+|
T Consensus 198 ~v~~~~~v~~i~~~~---~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~-la~~~gl~~~--ggI~Vd~~~~Ts~p~IyA~G 271 (785)
T TIGR02374 198 TFLLEKDTVEIVGAT---KADRIRFKDGSSLEADLIVMAAGIRPNDE-LAVSAGIKVN--RGIIVNDSMQTSDPDIYAVG 271 (785)
T ss_pred EEEeCCceEEEEcCC---ceEEEEECCCCEEEcCEEEECCCCCcCcH-HHHhcCCccC--CCEEECCCcccCCCCEEEee
Confidence 999999999998654 24568889999999999999999999998 8877788764 77999999999999999999
Q ss_pred cccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCceEE
Q psy1545 312 DVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEIL 391 (454)
Q Consensus 312 D~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~ 391 (454)
||+..+.. ...++..|..||+++|.||++... ..|+...++...+.+|++++++|.+...... ....
T Consensus 272 D~a~~~~~------~~gl~~~a~~qa~vaA~ni~g~~~-----~~~~~~~~~~~lk~~g~~v~s~G~~~~~~~~--~~~~ 338 (785)
T TIGR02374 272 ECAEHNGR------VYGLVAPLYEQAKVLADHICGVEC-----EEYEGSDLSAKLKLLGVDVWSAGDAQETERT--TSIK 338 (785)
T ss_pred ecceeCCc------ccccHHHHHHHHHHHHHHhcCCCC-----cCCCCCccceEEEECCcceEecccCCCCCCc--EEEE
Confidence 99975421 234678899999999999997421 2355556667788999999999986643221 1222
Q ss_pred EeecCCccEEEEEEECCeEEEEEEEcCCchHHHHHHHHhcCCCcchhhhhcc
Q psy1545 392 LRVTRGEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLL 443 (454)
Q Consensus 392 ~~~~~~~~~~k~~~~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~ 443 (454)
+.+.....|.|+++++++|+|++++|.......+..+|.++..+++....|+
T Consensus 339 ~~d~~~~~y~kl~~~~~rLlGavlvgd~~~~~~L~~li~~~~~l~~~~~ll~ 390 (785)
T TIGR02374 339 IYDEQKGIYKKLVLSDDKLLGAVLFGDTSDYGRLLDMVLKQADISEDPAIIK 390 (785)
T ss_pred EEcCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHcCCCCCcChhhhc
Confidence 2233345699999999999999999999888999999999998888763333
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=367.67 Aligned_cols=354 Identities=19% Similarity=0.259 Sum_probs=275.5
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccccc----ccchhhhHH-HHHhc-CcEEEc-
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLS----DITVEETDA-NKFEG-LCTVIV- 73 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~-~i~~~~- 73 (454)
|++++||||||+||+++|..|++.+++.+|+||++++...+ +.+.++..+. ..++..... +.+.+ +++++.
T Consensus 1 m~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~ 78 (377)
T PRK04965 1 MSNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEY--NKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPH 78 (377)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCc--CcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECC
Confidence 77899999999999999999999888899999999886532 2232222111 112222122 33444 999875
Q ss_pred ceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC--CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHH
Q psy1545 74 DTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS--PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELV 151 (454)
Q Consensus 74 ~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a 151 (454)
.+|+.++++.+.+.+ ++..+.||+||||||++|+.|+++ +.++.+.+..++..+...+..+++++|||+|++|+|+|
T Consensus 79 ~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A 157 (377)
T PRK04965 79 TWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELA 157 (377)
T ss_pred CEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHH
Confidence 589999998888887 567899999999999999999888 34667777777877777777789999999999999999
Q ss_pred HHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCC
Q psy1545 152 HELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDT 229 (454)
Q Consensus 152 ~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 229 (454)
..|. +.+|+++++.++++++.++++....+.+.+.+ .
T Consensus 158 ~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~-----------------------------------------~ 196 (377)
T PRK04965 158 MDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTE-----------------------------------------M 196 (377)
T ss_pred HHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHh-----------------------------------------C
Confidence 9987 89999999999988776677777777777654 8
Q ss_pred ceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCceee
Q psy1545 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYA 309 (454)
Q Consensus 230 gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya 309 (454)
||++++++.+.++..+++ .+.+.+++|+++++|.||+|+|.+|+.+ +++..|+.++ + +|.||+++||+.|||||
T Consensus 197 gV~i~~~~~v~~i~~~~~---~~~v~~~~g~~i~~D~vI~a~G~~p~~~-l~~~~gl~~~-~-gi~vd~~l~ts~~~VyA 270 (377)
T PRK04965 197 GVHLLLKSQLQGLEKTDS---GIRATLDSGRSIEVDAVIAAAGLRPNTA-LARRAGLAVN-R-GIVVDSYLQTSAPDIYA 270 (377)
T ss_pred CCEEEECCeEEEEEccCC---EEEEEEcCCcEEECCEEEECcCCCcchH-HHHHCCCCcC-C-CEEECCCcccCCCCEEE
Confidence 999999999999987642 4567888999999999999999999998 8777788764 3 49999999999999999
Q ss_pred cCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCce
Q psy1545 310 AGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE 389 (454)
Q Consensus 310 ~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~ 389 (454)
+|||+..... ..+.+..|..||+++|+||++... .|.........+.+++++.++|...... ..|
T Consensus 271 ~GD~a~~~~~------~~~~~~~a~~~g~~~a~n~~g~~~------~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~- 335 (377)
T PRK04965 271 LGDCAEINGQ------VLPFLQPIQLSAMALAKNLLGQNT------PLKLPAMLVKVKTPELPLQLAGETQRQD--LRW- 335 (377)
T ss_pred eeecEeECCc------eeehHHHHHHHHHHHHHHhcCCCc------ccccCCccEEEecCceeeEECCCCCCCC--ceE-
Confidence 9999975311 234677799999999999998532 2333333344578899999999865322 122
Q ss_pred EEEeecCCccEEEEEEECCeEEEEEEEcCCc
Q psy1545 390 ILLRVTRGEEYIKLVMKDGRMQGAVLIGETE 420 (454)
Q Consensus 390 ~~~~~~~~~~~~k~~~~~~~i~G~~~~g~~~ 420 (454)
.+.+.....|.|+++++|+|+|+.++|+..
T Consensus 336 -~~~~~~~~~~~~~~~~~~~l~g~~~~g~~~ 365 (377)
T PRK04965 336 -QINAESQGMVAKGVDEAGQLRAFVVSEDRM 365 (377)
T ss_pred -EEEeCCCCeEEEEEccCCcEEEEEEEChhH
Confidence 222333345778888999999999999974
|
|
| >KOG0405|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=342.00 Aligned_cols=371 Identities=20% Similarity=0.301 Sum_probs=301.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC-Cccccccccccccccc------------------------cccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS-GIVKAVTKTVPVTKLL------------------------SDIT 56 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~-~~~~~~~~~~~~~~~~------------------------~~~~ 56 (454)
.||..|||||.+|+++|++.++. |.++.|+|.. ...+.|.++.+.++.. ..++
T Consensus 20 ~fDylvIGgGSGGvasARrAa~~--GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fd 97 (478)
T KOG0405|consen 20 DFDYLVIGGGSGGVASARRAASH--GAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFD 97 (478)
T ss_pred ccceEEEcCCcchhHHhHHHHhc--CceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCc
Confidence 48999999999999999999998 9999999998 6667777765544321 1122
Q ss_pred hhh------h--------HHHHHhc-CcEEEcceEEEEeCcccEEEeccCc--EEEecEEEEecCCCCCCCCCCCceeee
Q psy1545 57 VEE------T--------DANKFEG-LCTVIVDTVAAIDPRVNCVITEKQN--RIKYKTLCICTGASPRKIWYSPHVITI 119 (454)
Q Consensus 57 ~~~------~--------~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lviAtG~~p~~~~~~~~~~~~ 119 (454)
|.. . +.+.+.+ +++++.++..++++.+..|...++. .+++++++||||++|..|.+|..-+.+
T Consensus 98 W~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~gi 177 (478)
T KOG0405|consen 98 WKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELGI 177 (478)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchhhcc
Confidence 211 1 1112233 8999999999999999888887874 478999999999999999998444443
Q ss_pred eccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhh
Q psy1545 120 RDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIF 197 (454)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~ 197 (454)
+++.++.|.+. |+|++|+|+|++|+|+|..++ |++++++.|.+.++.. ||+.+...+.+.+..
T Consensus 178 -dSDgff~Lee~---Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~-FD~~i~~~v~~~~~~---------- 242 (478)
T KOG0405|consen 178 -DSDGFFDLEEQ---PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG-FDEMISDLVTEHLEG---------- 242 (478)
T ss_pred -ccccccchhhc---CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc-hhHHHHHHHHHHhhh----------
Confidence 66778888775 999999999999999999997 9999999999999986 799999998888855
Q ss_pred hhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 198 KRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
+||+++++++++++.+..+ ....+..++|+...+|.++||+|+.|++
T Consensus 243 -------------------------------~ginvh~~s~~~~v~K~~~--g~~~~i~~~~~i~~vd~llwAiGR~Pnt 289 (478)
T KOG0405|consen 243 -------------------------------RGINVHKNSSVTKVIKTDD--GLELVITSHGTIEDVDTLLWAIGRKPNT 289 (478)
T ss_pred -------------------------------cceeecccccceeeeecCC--CceEEEEeccccccccEEEEEecCCCCc
Confidence 8999999999999988764 2455666777666799999999999998
Q ss_pred c-cccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC-CCCCccee
Q psy1545 278 N-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA-VKNEPVIQ 355 (454)
Q Consensus 278 ~-~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~ 355 (454)
. +-++..|+.++.+|.|.||+|.+||+|+||++||+++. ..+.+.|++.|+..|+.+.+. ...+..+.
T Consensus 290 k~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~gk----------~~LTPVAiaagr~la~rlF~~~~~~kldY~ 359 (478)
T KOG0405|consen 290 KGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTGK----------INLTPVAIAAGRKLANRLFGGGKDTKLDYE 359 (478)
T ss_pred ccccchhcceeeCCCCCEEEeccccCCCCceEEeccccCc----------EecchHHHhhhhhHHHHhhcCCCCCccccc
Confidence 7 34566789999999999999999999999999999874 357789999999999999984 23345566
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCCC----ceEEE----------eecCCccEEEEEE--ECCeEEEEEEEcCC
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLEND----YEILL----------RVTRGEEYIKLVM--KDGRMQGAVLIGET 419 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~----~~~~~----------~~~~~~~~~k~~~--~~~~i~G~~~~g~~ 419 (454)
.+|..+|++| ++.++|+++.++..+. +.++- ...+..-++|+++ ++.+++|+|++|+.
T Consensus 360 nVp~vVFshP------~igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~ 433 (478)
T KOG0405|consen 360 NVPCVVFSHP------PIGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDD 433 (478)
T ss_pred cCceEEEecC------CcccccCCHHHHHHHhCccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCC
Confidence 7888999998 8999999998875322 22221 1124556999999 79999999999998
Q ss_pred c--hHHHHHHHHhcCCCcchh
Q psy1545 420 E--IEEMCENLILNQLDLTDI 438 (454)
Q Consensus 420 ~--~~~~~~~~i~~~~~~~~~ 438 (454)
. ..+-+..+++.|.|-.|.
T Consensus 434 s~EilQGf~VAvKmGaTKadF 454 (478)
T KOG0405|consen 434 SAEILQGFAVAVKMGATKADF 454 (478)
T ss_pred cHHHHhhhhhheecCcchhhh
Confidence 4 578999999999998886
|
|
| >KOG1335|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=341.47 Aligned_cols=385 Identities=22% Similarity=0.279 Sum_probs=300.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc-ccccccccccc-c------------------------ccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK-AVTKTVPVTKL-L------------------------SDI 55 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~-~~~~~~~~~~~-~------------------------~~~ 55 (454)
.+|++|||+||+|..||..++++ |.+.+.+|++..++ .|.+..+.+.. + ..+
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQl--GlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~ 116 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQL--GLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSL 116 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHh--cceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceec
Confidence 38999999999999999999999 99999999966544 44444322110 0 001
Q ss_pred chhh--------------hHHHHHhc-CcEEEcceEEEEeCcccEEEeccCc--EEEecEEEEecCC-CCCCCCCCCcee
Q psy1545 56 TVEE--------------TDANKFEG-LCTVIVDTVAAIDPRVNCVITEKQN--RIKYKTLCICTGA-SPRKIWYSPHVI 117 (454)
Q Consensus 56 ~~~~--------------~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lviAtG~-~p~~~~~~~~~~ 117 (454)
++.. -....|++ +++++.+...+++|+...+.-.||+ .+.+++++||||+ .+..|.+.-+--
T Consensus 117 dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~PGI~IDek 196 (506)
T KOG1335|consen 117 DLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGITIDEK 196 (506)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCCCeEecCc
Confidence 1100 11122334 8999999999999998777766664 7899999999999 455555551112
Q ss_pred eeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhh
Q psy1545 118 TIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPET 195 (454)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~ 195 (454)
.+.++..++.|.+. |++++|+|+|.+|+|++..+. |++||+++-.+.+.+. +|++++..+++.|.+
T Consensus 197 kIVSStgALsL~~v---Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~L~k-------- 264 (506)
T KOG1335|consen 197 KIVSSTGALSLKEV---PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRVLQK-------- 264 (506)
T ss_pred eEEecCCccchhhC---cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHHHHh--------
Confidence 34567778888765 999999999999999999875 9999999999999986 899999999999866
Q ss_pred hhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC---C--cEEecCEEEEe
Q psy1545 196 IFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN---G--HTHACDIVVSA 270 (454)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~---g--~~~~~D~vi~a 270 (454)
+|+++++++.|..++.++++ .+.+++.+ + ++++||.++++
T Consensus 265 ---------------------------------QgikF~l~tkv~~a~~~~dg--~v~i~ve~ak~~k~~tle~DvlLVs 309 (506)
T KOG1335|consen 265 ---------------------------------QGIKFKLGTKVTSATRNGDG--PVEIEVENAKTGKKETLECDVLLVS 309 (506)
T ss_pred ---------------------------------cCceeEeccEEEEeeccCCC--ceEEEEEecCCCceeEEEeeEEEEE
Confidence 99999999999999987752 45555543 2 67999999999
Q ss_pred eccCcCcc-cccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 271 IGVVPNSN-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 271 ~G~~p~~~-~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
+|++|-+. +-++..|+..|..|++.||..++|.+|+||++||++..| +++|.|..||..+.+.|.+..
T Consensus 310 iGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP~i~~IGDv~~gp----------MLAhkAeeegI~~VE~i~g~~- 378 (506)
T KOG1335|consen 310 IGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVPHIYAIGDVTLGP----------MLAHKAEEEGIAAVEGIAGGH- 378 (506)
T ss_pred ccCcccccCCChhhcccccccccceeccccccccCCceEEecccCCcc----------hhhhhhhhhchhheeeecccC-
Confidence 99999887 334555788899999999999999999999999999865 799999999999999998753
Q ss_pred CCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEE---------e---ecCCccEEEEEE--ECCeEEEEEE
Q psy1545 350 NEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILL---------R---VTRGEEYIKLVM--KDGRMQGAVL 415 (454)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~---------~---~~~~~~~~k~~~--~~~~i~G~~~ 415 (454)
+...+.-+|..+||+| ++++||+++.+.+...+...+ | ....++|+|+++ ++++|||+|+
T Consensus 379 ~hv~ynciP~v~ythP------EvawVG~TEeqlkeegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHi 452 (506)
T KOG1335|consen 379 GHVDYNCIPSVVYTHP------EVAWVGKTEEQLKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHI 452 (506)
T ss_pred cccccCCCCceeeccc------ceeeeccchhhHHhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEE
Confidence 1222333677889988 899999999876543332211 1 223578999999 6999999999
Q ss_pred EcCCc--hHHHHHHHHhcCCCcchhhhhccCCCCCCCCCC
Q psy1545 416 IGETE--IEEMCENLILNQLDLTDIADDLLNPNIDIDDYF 453 (454)
Q Consensus 416 ~g~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 453 (454)
+|+.+ .+....++|.-|.+.+|+ .+.-|++.++++-|
T Consensus 453 igp~AgEli~EA~lAieyGasaeDv-arvchaHPTlSEa~ 491 (506)
T KOG1335|consen 453 IGPNAGELIHEASLAIEYGASAEDV-ARVCHAHPTLSEAF 491 (506)
T ss_pred ecCCHHHHHHHHHHHHHhCccHHHH-hhccCCCCcHHHHH
Confidence 99994 678889999999999998 55666677666544
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=365.00 Aligned_cols=380 Identities=22% Similarity=0.299 Sum_probs=286.7
Q ss_pred HHHHHHhhcCCCCeEEEECCCCcccccc-ccccccccc-c-ccchhhhHHHHH-hc-CcEEE-cceEEEEeCcccEEEec
Q psy1545 16 SCVEGLAFLHPGESIGLVTPSGIVKAVT-KTVPVTKLL-S-DITVEETDANKF-EG-LCTVI-VDTVAAIDPRVNCVITE 89 (454)
Q Consensus 16 ~aA~~l~~~~~g~~v~lie~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~-~~-~i~~~-~~~v~~i~~~~~~v~~~ 89 (454)
+||..|++++++.+|+|||+++.+.+.. ..+.+.... . ..+......+.+ .+ +++++ .++|+.+++.++.+.+.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~ 80 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVR 80 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEEEE
Confidence 4789999987788999999999765432 222222111 1 111111112333 45 99986 56999999988888765
Q ss_pred c---CcEEE--ecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHh--hcCCeEEEEcCchhHHHHHHHhc--C
Q psy1545 90 K---QNRIK--YKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKL--KSAKKIVVIGNGGIATELVHELS--N 156 (454)
Q Consensus 90 ~---g~~i~--~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~--~~~~~vvVvG~G~~g~e~a~~l~--g 156 (454)
+ ++.+. ||+||||||++|+.|+++ ++++...+..++..+++.+ ..+++++|||+|++|+|+|..++ |
T Consensus 81 ~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g 160 (427)
T TIGR03385 81 NNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERG 160 (427)
T ss_pred ECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCC
Confidence 3 35677 999999999999988887 3466667777777776665 35799999999999999999886 8
Q ss_pred CcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeC
Q psy1545 157 VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYS 236 (454)
Q Consensus 157 ~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~ 236 (454)
.+|++++++++++...+++++...+.+.+.+ .||+++++
T Consensus 161 ~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~-----------------------------------------~gV~v~~~ 199 (427)
T TIGR03385 161 KNVTLIHRSERILNKLFDEEMNQIVEEELKK-----------------------------------------HEINLRLN 199 (427)
T ss_pred CcEEEEECCcccCccccCHHHHHHHHHHHHH-----------------------------------------cCCEEEeC
Confidence 9999999998875444666666666666644 89999999
Q ss_pred ceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCceeecCccccc
Q psy1545 237 CEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTP 316 (454)
Q Consensus 237 ~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~ 316 (454)
+.+.++..++ .+ +.+.+|+++++|.+++|+|++|+.+ +++..++.++++|+|.||+++||+.|+|||+|||+..
T Consensus 200 ~~v~~i~~~~----~~-v~~~~g~~i~~D~vi~a~G~~p~~~-~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~ 273 (427)
T TIGR03385 200 EEVDSIEGEE----RV-KVFTSGGVYQADMVILATGIKPNSE-LAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAES 273 (427)
T ss_pred CEEEEEecCC----CE-EEEcCCCEEEeCEEEECCCccCCHH-HHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEe
Confidence 9999998654 22 5667888999999999999999998 8888888888889999999999999999999999986
Q ss_pred CCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC--CceEEE-e
Q psy1545 317 SWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN--DYEILL-R 393 (454)
Q Consensus 317 ~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~--~~~~~~-~ 393 (454)
+....+.+...++++.|.+||+++|+||++... .++.......+.+++++++++|+++.+++.. ++.... .
T Consensus 274 ~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~~~------~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~ 347 (427)
T TIGR03385 274 HNIITKKPAWVPLAWGANKMGRIAGENIAGNDI------EFKGVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVK 347 (427)
T ss_pred eeccCCCceeeechHHHHHHHHHHHHHhcCCCC------CCCCcceeeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEe
Confidence 543333333457899999999999999987521 2322223334667888999999998765432 232211 1
Q ss_pred --------ecCCccEEEEEE--ECCeEEEEEEEcCC---chHHHHHHHHhcCCCcchhhhhc--cCCCCC
Q psy1545 394 --------VTRGEEYIKLVM--KDGRMQGAVLIGET---EIEEMCENLILNQLDLTDIADDL--LNPNID 448 (454)
Q Consensus 394 --------~~~~~~~~k~~~--~~~~i~G~~~~g~~---~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~ 448 (454)
.....+|+|+++ ++++|+|+|++|+. +.++.++.+|++++|++++.+.. ++|.|+
T Consensus 348 ~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~ 417 (427)
T TIGR03385 348 AKTHANYYPGNSPLHLKLIYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFELAYAPPYS 417 (427)
T ss_pred cCCCCCcCCCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCC
Confidence 112457999999 47999999999988 34679999999999999997555 677776
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=356.43 Aligned_cols=384 Identities=25% Similarity=0.335 Sum_probs=323.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCC-CeEEEECCCCccccccccccccccccc----cchhhhHHHHHhc-CcEEEcc-
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPG-ESIGLVTPSGIVKAVTKTVPVTKLLSD----ITVEETDANKFEG-LCTVIVD- 74 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g-~~v~lie~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~i~~~~~- 74 (454)
+.++||||.|++|..+..++.+..|+ .+|+++..+++.. +++..++..++. .++.....++|.+ +++++.+
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n--Y~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~ 80 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN--YNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGE 80 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc--ccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCC
Confidence 57899999999999999999996543 5899999998875 466655555543 2233344567777 9999866
Q ss_pred eEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHH
Q psy1545 75 TVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATEL 150 (454)
Q Consensus 75 ~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~ 150 (454)
+|+++|++++.|+++.|.++.||+|++||||.|+.+|+| +.++.+++.+|+..+...-+..++.+|||||..|+|+
T Consensus 81 ~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEa 160 (793)
T COG1251 81 KVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEA 160 (793)
T ss_pred eeEEeccCcceEEccCCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHH
Confidence 999999999999999999999999999999999999998 6889999999999888776667788999999999999
Q ss_pred HHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccC
Q psy1545 151 VHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRD 228 (454)
Q Consensus 151 a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 228 (454)
|..|. |.+++|++..+.++.+.+|+....+++..+.+
T Consensus 161 A~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~----------------------------------------- 199 (793)
T COG1251 161 ARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLED----------------------------------------- 199 (793)
T ss_pred HHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHh-----------------------------------------
Confidence 99997 99999999999999999999999999888866
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCcee
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVY 308 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iy 308 (454)
+|++++++...+++...+ ....++++||+.+++|.|++|+|++||.. +....|+.+++ +|.||++|||+.|+||
T Consensus 200 ~Gi~~~l~~~t~ei~g~~---~~~~vr~~DG~~i~ad~VV~a~GIrPn~e-la~~aGlavnr--GIvvnd~mqTsdpdIY 273 (793)
T COG1251 200 LGIKVLLEKNTEEIVGED---KVEGVRFADGTEIPADLVVMAVGIRPNDE-LAKEAGLAVNR--GIVVNDYMQTSDPDIY 273 (793)
T ss_pred hcceeecccchhhhhcCc---ceeeEeecCCCcccceeEEEecccccccH-hHHhcCcCcCC--CeeecccccccCCCee
Confidence 999999999888888743 47789999999999999999999999999 99999999854 7999999999999999
Q ss_pred ecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCc
Q psy1545 309 AAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDY 388 (454)
Q Consensus 309 a~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~ 388 (454)
|+|+|+...- ..+.+...+..||+++|+++++...+ .|...+.+...|..|+++.+.|.........
T Consensus 274 AvGEcae~~g------~~yGLVaP~yeq~~v~a~hl~~~~~~-----~y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~-- 340 (793)
T COG1251 274 AVGECAEHRG------KVYGLVAPLYEQAKVLADHLCGGEAE-----AYEGSVTSTKLKVSGVDVFSAGDFQETEGAE-- 340 (793)
T ss_pred ehhhHHHhcC------ccceehhHHHHHHHHHHHHhccCccc-----ccccccchhhhcccccceeeccchhhcCCCc--
Confidence 9999998642 23567778999999999999987543 2334444445688899999999987332222
Q ss_pred eEEEeecCCccEEEEEEECCeEEEEEEEcCCchHHHHHHHHhcCCCcchhhhhccCCCC
Q psy1545 389 EILLRVTRGEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNI 447 (454)
Q Consensus 389 ~~~~~~~~~~~~~k~~~~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 447 (454)
.+++++....-|-|+++++++|+|+.++|+..+-.++..+|.++.+++++.+.|+-|.-
T Consensus 341 ~iv~~D~~~~iYKrlvL~dd~IvgavL~GDt~d~~~l~~li~~~~~~se~r~~li~~~~ 399 (793)
T COG1251 341 SIVFRDEQRGIYKKLVLKDDKIVGAVLYGDTSDGGWLLDLILKGADISEIRDTLILPQG 399 (793)
T ss_pred eEEEecccccceeEEEEeCCeEEEEEEEeecccchHHHHHHhcCCCccccchhhccccc
Confidence 23344433456999999999999999999999999999999999999999888876654
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=334.40 Aligned_cols=297 Identities=22% Similarity=0.282 Sum_probs=248.2
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc-ccccchhhhHHHHHhc--CcEEEcceEE
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL-LSDITVEETDANKFEG--LCTVIVDTVA 77 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~i~~~~~~v~ 77 (454)
|+++|||||||++|+.+|..|.+..++.+|+|||+.+++.+.......... ++...+.......+.+ +++|+.++|+
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~ 81 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVT 81 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEE
Confidence 367899999999999999999997225899999999988655444433222 2222333334444554 5999999999
Q ss_pred EEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC---CceeeeeccchHHHHHHHhh--------cCC-----eEEEE
Q psy1545 78 AIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS---PHVITIRDTDSVAVLQEKLK--------SAK-----KIVVI 141 (454)
Q Consensus 78 ~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~---~~~~~~~~~~~~~~l~~~~~--------~~~-----~vvVv 141 (454)
.||.+.++|+++++..+.||+||+|+|+.+..+.++ ++.+.+.+.+|+.+++..+. ..+ +++|+
T Consensus 82 ~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~Iv 161 (405)
T COG1252 82 DIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIV 161 (405)
T ss_pred EEcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEE
Confidence 999999999998878899999999999999999888 78899999999988877653 222 69999
Q ss_pred cCchhHHHHHHHhc-------C--------CcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCC
Q psy1545 142 GNGGIATELVHELS-------N--------VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGG 206 (454)
Q Consensus 142 G~G~~g~e~a~~l~-------g--------~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 206 (454)
|||++|+|+|.+|. . .+|+++++.+++++. +++++....++.|.+
T Consensus 162 GgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~-~~~~l~~~a~~~L~~------------------- 221 (405)
T COG1252 162 GGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM-FPPKLSKYAERALEK------------------- 221 (405)
T ss_pred CCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC-CCHHHHHHHHHHHHH-------------------
Confidence 99999999999884 1 389999999999995 799999988888866
Q ss_pred CCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCc-EEecCEEEEeeccCcCcccccCC-C
Q psy1545 207 EKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGH-THACDIVVSAIGVVPNSNIQVHG-T 284 (454)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~-~~~~D~vi~a~G~~p~~~~~~~~-~ 284 (454)
+||++++++.|++++++. |.+++|. +++++.+|||+|.+++. +++. .
T Consensus 222 ----------------------~GV~v~l~~~Vt~v~~~~-------v~~~~g~~~I~~~tvvWaaGv~a~~--~~~~l~ 270 (405)
T COG1252 222 ----------------------LGVEVLLGTPVTEVTPDG-------VTLKDGEEEIPADTVVWAAGVRASP--LLKDLS 270 (405)
T ss_pred ----------------------CCCEEEcCCceEEECCCc-------EEEccCCeeEecCEEEEcCCCcCCh--hhhhcC
Confidence 999999999999999876 7888887 59999999999999987 6676 5
Q ss_pred CceecCCCceEeccccc-cccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCc
Q psy1545 285 PFELAPDCGIGVNELMQ-TSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEP 352 (454)
Q Consensus 285 ~l~~~~~g~i~vd~~~~-t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~ 352 (454)
+++.|..|++.||+++| +++|+|||+|||+....+ ...++.++.|.+||.++|+||.+.+.|++
T Consensus 271 ~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~----~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~ 335 (405)
T COG1252 271 GLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP----RPVPPTAQAAHQQGEYAAKNIKARLKGKP 335 (405)
T ss_pred hhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC----CCCCChhHHHHHHHHHHHHHHHHHhcCCC
Confidence 78888889999999999 789999999999987643 22467899999999999999999988854
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=335.01 Aligned_cols=293 Identities=19% Similarity=0.268 Sum_probs=232.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccccccc-chhhhHHHHHhc-CcEEEcceEEEE
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDI-TVEETDANKFEG-LCTVIVDTVAAI 79 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~i~~~~~~v~~i 79 (454)
+.+|||||||+||+.+|..|.+. +.+|+|||+++++.+....+......... .........+.. +++++.++|+.|
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~--~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~I 87 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPK--KYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVYDV 87 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcC--CCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEEEE
Confidence 36899999999999999999764 78999999998875433322221111111 122222333444 899999999999
Q ss_pred eCcccEEEe----------ccCcEEEecEEEEecCCCCCCCCCC---CceeeeeccchHHHHHHHhh-------------
Q psy1545 80 DPRVNCVIT----------EKQNRIKYKTLCICTGASPRKIWYS---PHVITIRDTDSVAVLQEKLK------------- 133 (454)
Q Consensus 80 ~~~~~~v~~----------~~g~~i~~d~lviAtG~~p~~~~~~---~~~~~~~~~~~~~~l~~~~~------------- 133 (454)
|++++.|.+ +++.++.||+||||||++|..+++| +.++.+++.+++.++++.+.
T Consensus 88 d~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~ 167 (424)
T PTZ00318 88 DFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSV 167 (424)
T ss_pred EcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCh
Confidence 999998887 4566899999999999999888887 55667777787777655432
Q ss_pred ----cCCeEEEEcCchhHHHHHHHhc----------------CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCCh
Q psy1545 134 ----SAKKIVVIGNGGIATELVHELS----------------NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKP 193 (454)
Q Consensus 134 ----~~~~vvVvG~G~~g~e~a~~l~----------------g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~ 193 (454)
..++++|||+|++|+|+|..+. +.+|+++++++++++. +++++.+.+.+.+.+
T Consensus 168 ~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~-~~~~~~~~~~~~L~~------ 240 (424)
T PTZ00318 168 EERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS-FDQALRKYGQRRLRR------ 240 (424)
T ss_pred HHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-CCHHHHHHHHHHHHH------
Confidence 1248999999999999998874 4789999999998874 677777777777755
Q ss_pred hhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc
Q psy1545 194 ETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273 (454)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~ 273 (454)
+||++++++.|.++..+. +.+++|+++++|.+++++|.
T Consensus 241 -----------------------------------~gV~v~~~~~v~~v~~~~-------v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 241 -----------------------------------LGVDIRTKTAVKEVLDKE-------VVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred -----------------------------------CCCEEEeCCeEEEEeCCE-------EEECCCCEEEccEEEEccCC
Confidence 899999999999997643 67889999999999999999
Q ss_pred CcCcccccCCCCceecCCCceEeccccc-cccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCc
Q psy1545 274 VPNSNIQVHGTPFELAPDCGIGVNELMQ-TSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEP 352 (454)
Q Consensus 274 ~p~~~~~~~~~~l~~~~~g~i~vd~~~~-t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~ 352 (454)
+|+. +++..+++++++|+|.||++|| |++|||||+|||+..+.. ..+++++.|.+||+++|+||.+.+.+++
T Consensus 279 ~~~~--~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~-----~~~~~~~~A~~qg~~~A~ni~~~l~g~~ 351 (424)
T PTZ00318 279 GPGP--LTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEER-----PLPTLAQVASQQGVYLAKEFNNELKGKP 351 (424)
T ss_pred CCcc--hhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCC-----CCCCchHHHHHHHHHHHHHHHHHhcCCC
Confidence 9984 7777788888889999999999 799999999999985321 1246788999999999999998887754
|
|
| >KOG1336|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=312.08 Aligned_cols=376 Identities=23% Similarity=0.317 Sum_probs=301.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccccc--ccchhhhHHHHHhc-CcEEEcc-eEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLS--DITVEETDANKFEG-LCTVIVD-TVAA 78 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~i~~~~~-~v~~ 78 (454)
.+++|||||++|..|+..+++.++..+++++.++.+++ +.++.++..+. ..++..+..++|+. +|+++.+ .|+.
T Consensus 75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~p--ydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~ 152 (478)
T KOG1336|consen 75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLP--YDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVK 152 (478)
T ss_pred ceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCc--ccchhcccceeeccccccccChhhHhhcCceEEEcceeEE
Confidence 46999999999999999999998888999999887775 34444444332 23455556678888 9999855 9999
Q ss_pred EeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHh
Q psy1545 79 IDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHEL 154 (454)
Q Consensus 79 i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l 154 (454)
+|...+++.+.+|+.+.|++|+||||+.|+.|++| +++..++..+++..+...+...++++++|+|++|+|+|..+
T Consensus 153 ~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l 232 (478)
T KOG1336|consen 153 ADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAAL 232 (478)
T ss_pred eeccccEEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHH
Confidence 99999999999999999999999999999999888 78888999999998888888888999999999999999999
Q ss_pred c--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceE
Q psy1545 155 S--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKIT 232 (454)
Q Consensus 155 ~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~ 232 (454)
. +.+||++++.++.+++++.+++.+.+..++++ .||+
T Consensus 233 ~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~-----------------------------------------kgVk 271 (478)
T KOG1336|consen 233 VSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYEN-----------------------------------------KGVK 271 (478)
T ss_pred HhcCceEEEEccCccchhhhhhHHHHHHHHHHHHh-----------------------------------------cCeE
Confidence 7 88999999999999998999999999888866 9999
Q ss_pred EEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCceeecCc
Q psy1545 233 IEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGD 312 (454)
Q Consensus 233 i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD 312 (454)
++.++.+.+++.+.+ +....|.+.+|+++++|+|++.+|.+|++. +++. +..++++|+|.||+.|||++|||||+||
T Consensus 272 ~~~~t~~s~l~~~~~-Gev~~V~l~dg~~l~adlvv~GiG~~p~t~-~~~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGD 348 (478)
T KOG1336|consen 272 FYLGTVVSSLEGNSD-GEVSEVKLKDGKTLEADLVVVGIGIKPNTS-FLEK-GILLDSKGGIKVDEFFQTSVPNVYAIGD 348 (478)
T ss_pred EEEecceeecccCCC-CcEEEEEeccCCEeccCeEEEeeccccccc-cccc-cceecccCCEeehhceeeccCCcccccc
Confidence 999999999998775 567889999999999999999999999999 8876 7778899999999999999999999999
Q ss_pred ccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEE
Q psy1545 313 VCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILL 392 (454)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~ 392 (454)
|+..+.+.-.......++..|+.+|+.|...+.........+.+|. ++..|+......|.... +.++
T Consensus 349 va~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~~~~~lPyf------~t~~f~~~~~~~G~g~~-------~~v~ 415 (478)
T KOG1336|consen 349 VATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQDAYDYLPYF------YTRFFSLSWRFAGDGVG-------DVVL 415 (478)
T ss_pred eeecccccccccccchHHHHHHHHHHhhhhhhhccCcccccccchH------HHHHhhhhccccCcCcc-------ceee
Confidence 9998877655444467889999999976666554322221122222 22222222222222210 1111
Q ss_pred e-ecCCccEEEEEEECCeEEEEEEEcCC-chHHHHHHHHhcCCCcchh
Q psy1545 393 R-VTRGEEYIKLVMKDGRMQGAVLIGET-EIEEMCENLILNQLDLTDI 438 (454)
Q Consensus 393 ~-~~~~~~~~k~~~~~~~i~G~~~~g~~-~~~~~~~~~i~~~~~~~~~ 438 (454)
. ......|+..+++ +..+++.+-|.. +..+.++.++++|..++-+
T Consensus 416 ~G~~e~~~f~ay~~k-~~~v~a~~~~g~~~~~~~~a~l~~~~~~v~~~ 462 (478)
T KOG1336|consen 416 FGDLEPGSFGAYWIK-GDKVGAVAEGGRDEEVSQFAKLARQGPEVTSL 462 (478)
T ss_pred ecccccccceeeEee-ccEEEEEeccCCChHHHHHHHHHhcCCcchhh
Confidence 1 1122347887789 888888887766 5679999999999998874
|
|
| >KOG4716|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=301.33 Aligned_cols=381 Identities=20% Similarity=0.252 Sum_probs=284.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECC---CCc------ccccccccccccccc-------------------
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTP---SGI------VKAVTKTVPVTKLLS------------------- 53 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~---~~~------~~~~~~~~~~~~~~~------------------- 53 (454)
+||++|||||.+||+||++++.+ |.+|.++|- .|. .+.|.|..+.++.+.
T Consensus 19 dyDLIviGgGSgGLacaKeAa~~--G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~ 96 (503)
T KOG4716|consen 19 DYDLIVIGGGSGGLACAKEAADL--GAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN 96 (503)
T ss_pred CccEEEEcCCcchhhHHHHHHhc--CCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence 48999999999999999999999 999999874 332 123333333322210
Q ss_pred --c----cchh---hhHHHHH-----------hc-CcEEEcceEEEEeCcccEEEeccC--cEEEecEEEEecCCCCCCC
Q psy1545 54 --D----ITVE---ETDANKF-----------EG-LCTVIVDTVAAIDPRVNCVITEKQ--NRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 54 --~----~~~~---~~~~~~~-----------~~-~i~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lviAtG~~p~~~ 110 (454)
+ .+|. +...+.+ ++ .+.+++....++++++...+..+| +.+.++++|||||.+|+.|
T Consensus 97 ~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPrYp 176 (503)
T KOG4716|consen 97 VDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRYP 176 (503)
T ss_pred CccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCCCC
Confidence 0 0110 0111111 11 455566667777777655554455 3689999999999999999
Q ss_pred CCCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhcc
Q psy1545 111 WYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKT 188 (454)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~ 188 (454)
.+|+......+++|+..+.. .|.+.+|||+|++++|+|..|. |.+||+..|+--+. -||.++++.+.+.+.+
T Consensus 177 ~IpG~~Ey~ITSDDlFsl~~---~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~Lr--GFDqdmae~v~~~m~~- 250 (503)
T KOG4716|consen 177 DIPGAKEYGITSDDLFSLPY---EPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLR--GFDQDMAELVAEHMEE- 250 (503)
T ss_pred CCCCceeeeecccccccccC---CCCceEEEccceeeeehhhhHhhcCCCcEEEEEEeecc--cccHHHHHHHHHHHHH-
Confidence 99955555568888888754 3788899999999999999998 89999999864443 4899999999998866
Q ss_pred CCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC-----cEEe
Q psy1545 189 NTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG-----HTHA 263 (454)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g-----~~~~ 263 (454)
+||++...+.+.+++..++ +...|...+. -+-+
T Consensus 251 ----------------------------------------~Gikf~~~~vp~~Veq~~~--g~l~v~~k~t~t~~~~~~~ 288 (503)
T KOG4716|consen 251 ----------------------------------------RGIKFLRKTVPERVEQIDD--GKLRVFYKNTNTGEEGEEE 288 (503)
T ss_pred ----------------------------------------hCCceeecccceeeeeccC--CcEEEEeecccccccccch
Confidence 9999999988888887664 2344444321 3457
Q ss_pred cCEEEEeeccCcCcc-cccCCCCceec-CCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHH
Q psy1545 264 CDIVVSAIGVVPNSN-IQVHGTPFELA-PDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAA 341 (454)
Q Consensus 264 ~D~vi~a~G~~p~~~-~~~~~~~l~~~-~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa 341 (454)
+|.|+||+|+.+.++ .-++..|+.+| .+|.|.+|+.-+|++|+|||+||+.... +.+.+.|++.|+..|
T Consensus 289 ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~k---------pELTPvAIqsGrlLa 359 (503)
T KOG4716|consen 289 YDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDK---------PELTPVAIQSGRLLA 359 (503)
T ss_pred hhhhhhhhccccchhhcCCCccceeecccCCccccChHHhcCCCceEEecceecCC---------cccchhhhhhchHHH
Confidence 899999999999887 34566788875 4588999999999999999999998754 567889999999999
Q ss_pred hhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCC----CCceEE----------Ee-ecCCccEEEEEE-
Q psy1545 342 KCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLE----NDYEIL----------LR-VTRGEEYIKLVM- 405 (454)
Q Consensus 342 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~----~~~~~~----------~~-~~~~~~~~k~~~- 405 (454)
+.+.+..+....+..++.++|++. ++..+|+++..+.. ..++++ +. .+....|+|.++
T Consensus 360 ~Rlf~gs~q~~dy~~V~TTVFTPL------Ey~c~GlsEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~ 433 (503)
T KOG4716|consen 360 RRLFAGSTQLMDYDDVATTVFTPL------EYGCVGLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCE 433 (503)
T ss_pred HHHhcCcceeeeccCCceeeecch------hccccCCCHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeec
Confidence 999986655444555677777765 88999999876641 122221 11 122346999999
Q ss_pred --ECCeEEEEEEEcCC--chHHHHHHHHhcCCCcchhhhhc-cCCCC
Q psy1545 406 --KDGRMQGAVLIGET--EIEEMCENLILNQLDLTDIADDL-LNPNI 447 (454)
Q Consensus 406 --~~~~i~G~~~~g~~--~~~~~~~~~i~~~~~~~~~~~~~-~~~~~ 447 (454)
++.|++|.|++|++ ++++-++.+++.|+|..++.+.+ .||++
T Consensus 434 r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l~ntigIHPt~ 480 (503)
T KOG4716|consen 434 RDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNTIGIHPTT 480 (503)
T ss_pred ccCCceEEEEEEecCchhHHHHHHHHHHHhcccHHHHhhcccccccc
Confidence 58999999999999 47899999999999999986665 57765
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=311.52 Aligned_cols=292 Identities=17% Similarity=0.223 Sum_probs=226.2
Q ss_pred cEEEECCCHHHHHHHHHHhhc-CCCCeEEEECCCCcccccccccccccc-ccccchhhhHHHHHhc-CcEEEcceEEEEe
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFL-HPGESIGLVTPSGIVKAVTKTVPVTKL-LSDITVEETDANKFEG-LCTVIVDTVAAID 80 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~-~~g~~v~lie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~ 80 (454)
+|||||||+||+.+|..|+++ .++.+|+|||+++++.+....+.+... ....++.....+.+.+ +++++.++|+.+|
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id 80 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGID 80 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEEe
Confidence 589999999999999999754 468899999999886544333322111 1112222223344445 9999999999999
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCCCCCCCC---CceeeeeccchHHH----HHHHhh---cCCeEEEEcCchhHHHH
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASPRKIWYS---PHVITIRDTDSVAV----LQEKLK---SAKKIVVIGNGGIATEL 150 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~---~~~~~~~~~~~~~~----l~~~~~---~~~~vvVvG~G~~g~e~ 150 (454)
++++.|.+.+|++++||+||||||++|..|+++ ++++.+.+.+++.. +.+... .+++++|+|+|.+|+|+
T Consensus 81 ~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~ 160 (364)
T TIGR03169 81 PDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEI 160 (364)
T ss_pred cccCEEEECCCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHH
Confidence 999999998888999999999999999988887 55666666666655 332221 35799999999999999
Q ss_pred HHHhc------C--CcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccccccc
Q psy1545 151 VHELS------N--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNL 222 (454)
Q Consensus 151 a~~l~------g--~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (454)
|..|. + .+|+++ +.+.+++. +++++...+.+.+.+
T Consensus 161 A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~~~~~~~l~~----------------------------------- 203 (364)
T TIGR03169 161 ALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVRRLVLRLLAR----------------------------------- 203 (364)
T ss_pred HHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHHHHHHHHHHH-----------------------------------
Confidence 98885 2 489999 66666654 566666666666644
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEecccccc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQT 302 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t 302 (454)
.||++++++.+++++.+ .+.+++|+++++|.+++|+|.+|+. ++...++.++++|++.||+++||
T Consensus 204 ------~gV~v~~~~~v~~i~~~-------~v~~~~g~~i~~D~vi~a~G~~p~~--~l~~~gl~~~~~g~i~vd~~l~~ 268 (364)
T TIGR03169 204 ------RGIEVHEGAPVTRGPDG-------ALILADGRTLPADAILWATGARAPP--WLAESGLPLDEDGFLRVDPTLQS 268 (364)
T ss_pred ------CCCEEEeCCeeEEEcCC-------eEEeCCCCEEecCEEEEccCCChhh--HHHHcCCCcCCCCeEEECCcccc
Confidence 89999999999998643 3677888899999999999999986 55666777888899999999997
Q ss_pred -ccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCc
Q psy1545 303 -SISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEP 352 (454)
Q Consensus 303 -~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~ 352 (454)
+.|||||+|||+..+... .++.+..|..||+++|+||...+.+++
T Consensus 269 ~~~~~Iya~GD~~~~~~~~-----~~~~~~~A~~~g~~~a~ni~~~l~g~~ 314 (364)
T TIGR03169 269 LSHPHVFAAGDCAVITDAP-----RPKAGVYAVRQAPILAANLRASLRGQP 314 (364)
T ss_pred CCCCCEEEeeeeeecCCCC-----CCCchHHHHHhHHHHHHHHHHHhcCCC
Confidence 999999999999753211 134677899999999999998877654
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=286.31 Aligned_cols=274 Identities=25% Similarity=0.250 Sum_probs=203.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc------cccccccccccchhhhHHHHHhc-CcEEEcce
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK------TVPVTKLLSDITVEETDANKFEG-LCTVIVDT 75 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~ 75 (454)
+||+|||||+||++||..|++. +.+|+|||+++..+.+.. ++.+.......++.....+.+.+ +++++.++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~ 78 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA--NLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYEE 78 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC--CCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEEE
Confidence 6899999999999999999998 899999999874332221 12221112222333334444555 88887789
Q ss_pred EEEEeCccc--EEEeccCcEEEecEEEEecCCCCCCCCCC-C------ceeeeeccchHHHHHHHhhcCCeEEEEcCchh
Q psy1545 76 VAAIDPRVN--CVITEKQNRIKYKTLCICTGASPRKIWYS-P------HVITIRDTDSVAVLQEKLKSAKKIVVIGNGGI 146 (454)
Q Consensus 76 v~~i~~~~~--~v~~~~g~~i~~d~lviAtG~~p~~~~~~-~------~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~ 146 (454)
|+.+++... .+.+.++.++.||+||+|||++|+.|++| . .++.....+ .....+++++|+|+|.+
T Consensus 79 v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~------~~~~~~~~v~ViG~G~~ 152 (300)
T TIGR01292 79 VIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCD------GPFFKNKEVAVVGGGDS 152 (300)
T ss_pred EEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecC------hhhcCCCEEEEECCChH
Confidence 999987765 55566677899999999999999888776 1 111111111 11224789999999999
Q ss_pred HHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccccccccc
Q psy1545 147 ATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHG 224 (454)
Q Consensus 147 g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (454)
|+|+|..+. +.+|+++++.+.+.. ...+.+.+.
T Consensus 153 ~~e~a~~l~~~~~~V~~v~~~~~~~~-------~~~~~~~l~-------------------------------------- 187 (300)
T TIGR01292 153 AIEEALYLTRIAKKVTLVHRRDKFRA-------EKILLDRLR-------------------------------------- 187 (300)
T ss_pred HHHHHHHHHhhcCEEEEEEeCcccCc-------CHHHHHHHH--------------------------------------
Confidence 999999987 889999999875421 222333332
Q ss_pred CccCC-ceEEEeCceEEEEEcCCCCccceEEEec---CC--cEEecCEEEEeeccCcCcccccCCCCceecCCCceEecc
Q psy1545 225 SSRDT-KITIEYSCEVERIVDSEDDTCNAYVKLT---NG--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNE 298 (454)
Q Consensus 225 ~l~~~-gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~ 298 (454)
+. ||++++++.+.+++.++. ...+++. ++ .++++|.+++|+|++|+.+ +++.. +.++++|++.||+
T Consensus 188 ---~~~gv~~~~~~~v~~i~~~~~---~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~-~l~~~-~~~~~~g~i~v~~ 259 (300)
T TIGR01292 188 ---KNPNIEFLWNSTVKEIVGDNK---VEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTE-LLKGL-LELDEGGYIVTDE 259 (300)
T ss_pred ---hCCCeEEEeccEEEEEEccCc---EEEEEEEecCCCceEEEEccEEEEeeCCCCChH-HHHHh-heecCCCcEEECC
Confidence 25 999999999999986542 3334442 23 6799999999999999998 77766 6777889999999
Q ss_pred ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 299 LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 299 ~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
+++|++|||||+|||+... ++.+..|+.||+.||.+|..
T Consensus 260 ~~~t~~~~vya~GD~~~~~---------~~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 260 GMRTSVPGVFAAGDVRDKG---------YRQAVTAAGDGCIAALSAER 298 (300)
T ss_pred CCccCCCCEEEeecccCcc---------hhhhhhhhhhHHHHHHHHHh
Confidence 9999999999999999732 35678899999999999875
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=281.24 Aligned_cols=287 Identities=22% Similarity=0.195 Sum_probs=195.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccc---ccc---cccccchhhhHHHHHhc-CcEEEcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVP---VTK---LLSDITVEETDANKFEG-LCTVIVD 74 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~-~i~~~~~ 74 (454)
.+||+||||||||++||..|+++ ++++++||.....+.+..... ++. ......+.....+.... ++++..+
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~--g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARA--NLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD 83 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee
Confidence 47999999999999999999998 889999986544332221111 111 11111112222222233 6677777
Q ss_pred eEEEEeCcccEEEec-cCcEEEecEEEEecCCCCCCCCCCC-ceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHH
Q psy1545 75 TVAAIDPRVNCVITE-KQNRIKYKTLCICTGASPRKIWYSP-HVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVH 152 (454)
Q Consensus 75 ~v~~i~~~~~~v~~~-~g~~i~~d~lviAtG~~p~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~ 152 (454)
++..++.....+.+. +...+.||+||+|||++|+.|++|. ..+..........+......+++++|||+|.+|+|+|.
T Consensus 84 ~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~ 163 (321)
T PRK10262 84 HINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEAL 163 (321)
T ss_pred EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHH
Confidence 777787766554432 2347899999999999999888871 11111111111111111224899999999999999999
Q ss_pred Hhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCc
Q psy1545 153 ELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTK 230 (454)
Q Consensus 153 ~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~g 230 (454)
.|+ +.+|+++++++.+. .++...+.+.+. +++.|
T Consensus 164 ~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~-----------------------------------------l~~~g 199 (321)
T PRK10262 164 YLSNIASEVHLIHRRDGFR---AEKILIKRLMDK-----------------------------------------VENGN 199 (321)
T ss_pred HHHhhCCEEEEEEECCccC---CCHHHHHHHHhh-----------------------------------------ccCCC
Confidence 987 89999999987642 123233333333 34589
Q ss_pred eEEEeCceEEEEEcCCCCccceEEEecCC------cEEecCEEEEeeccCcCcccccCCCCceecCCCceEecc-----c
Q psy1545 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNG------HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNE-----L 299 (454)
Q Consensus 231 v~i~~~~~v~~i~~~~~~~~~~~v~~~~g------~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~-----~ 299 (454)
|++++++.++++..++. ....+++.++ +++++|.|++++|++|+.. ++.. ++.+ ++|+|.||+ +
T Consensus 200 V~i~~~~~v~~v~~~~~--~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~-l~~~-~l~~-~~g~i~vd~~~~~~~ 274 (321)
T PRK10262 200 IILHTNRTLEEVTGDQM--GVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA-IFEG-QLEL-ENGYIKVQSGIHGNA 274 (321)
T ss_pred eEEEeCCEEEEEEcCCc--cEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChh-Hhhc-cccc-cCCEEEECCCCcccc
Confidence 99999999999987542 2334555432 4799999999999999997 6553 4665 468999997 6
Q ss_pred cccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 300 MQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 300 ~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
++|++|+|||+|||++.+ ......|+.+|..||..|...+
T Consensus 275 ~~t~~~~VyA~GD~~~~~---------~~~~~~A~~~g~~Aa~~~~~~l 314 (321)
T PRK10262 275 TQTSIPGVFAAGDVMDHI---------YRQAITSAGTGCMAALDAERYL 314 (321)
T ss_pred cccCCCCEEECeeccCCC---------cceEEEEehhHHHHHHHHHHHH
Confidence 889999999999999753 2344458999999999887644
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=293.02 Aligned_cols=276 Identities=23% Similarity=0.271 Sum_probs=200.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccc-----cccccchhhhHHHHHhc-CcEEEc-ce
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTK-----LLSDITVEETDANKFEG-LCTVIV-DT 75 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~i~~~~-~~ 75 (454)
+||+||||||||++||..|++. |.+|+|+++. ..+.+.+...... .....++.....+.+.+ +++++. .+
T Consensus 213 ~dVvIIGgGpAGl~AA~~la~~--G~~v~li~~~-~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~ 289 (515)
T TIGR03140 213 YDVLVVGGGPAGAAAAIYAARK--GLRTAMVAER-IGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQR 289 (515)
T ss_pred CCEEEECCCHHHHHHHHHHHHC--CCcEEEEecC-CCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCE
Confidence 7999999999999999999998 9999999753 2222211111100 01122233334444555 899875 48
Q ss_pred EEEEeCcc--cEEEeccCcEEEecEEEEecCCCCCCCCCCC-------ceeeeeccchHHHHHHHhhcCCeEEEEcCchh
Q psy1545 76 VAAIDPRV--NCVITEKQNRIKYKTLCICTGASPRKIWYSP-------HVITIRDTDSVAVLQEKLKSAKKIVVIGNGGI 146 (454)
Q Consensus 76 v~~i~~~~--~~v~~~~g~~i~~d~lviAtG~~p~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~ 146 (454)
|..++... ..+.+.++..+.||++|+|||++|+.|+++. .++.....+ .....+++++|||||++
T Consensus 290 V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~------~~~~~~k~VvViGgG~~ 363 (515)
T TIGR03140 290 AKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCD------GPFFKGKDVAVIGGGNS 363 (515)
T ss_pred EEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccC------hhhcCCCEEEEECCcHH
Confidence 88887654 3566667788999999999999998888771 111111111 11234899999999999
Q ss_pred HHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccccccccc
Q psy1545 147 ATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHG 224 (454)
Q Consensus 147 g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (454)
|+|+|..|+ +.+||++++.+.+.. ...+.+.+.
T Consensus 364 g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~-------------------------------------- 398 (515)
T TIGR03140 364 GIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLK-------------------------------------- 398 (515)
T ss_pred HHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHh--------------------------------------
Confidence 999999987 889999998776532 122333332
Q ss_pred CccCCceEEEeCceEEEEEcCCCCccceEEEecC---C--cEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccc
Q psy1545 225 SSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN---G--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNEL 299 (454)
Q Consensus 225 ~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~---g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~ 299 (454)
+..||++++++.++++..+++ ....+.+.+ + +++++|.|++++|++|+++ +++.. +.++++|+|.||++
T Consensus 399 --~~~gV~i~~~~~v~~i~~~~~--~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~-~l~~~-~~~~~~G~I~vd~~ 472 (515)
T TIGR03140 399 --SLPNVDILTSAQTTEIVGDGD--KVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTE-WLKDA-VELNRRGEIVIDER 472 (515)
T ss_pred --cCCCCEEEECCeeEEEEcCCC--EEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCch-HHhhh-cccCCCCeEEECCC
Confidence 126999999999999987642 233465543 2 4699999999999999998 87766 77778899999999
Q ss_pred cccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 300 MQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 300 ~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
+||++|+|||+|||+..+ .+++..|+.+|..||.+|...
T Consensus 473 ~~Ts~p~IyAaGDv~~~~---------~~~~~~A~~~G~~Aa~~i~~~ 511 (515)
T TIGR03140 473 GRTSVPGIFAAGDVTTVP---------YKQIIIAMGEGAKAALSAFDY 511 (515)
T ss_pred CCCCCCCEEEcccccCCc---------cceEEEEEccHHHHHHHHHHH
Confidence 999999999999999754 234557999999999988753
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=264.33 Aligned_cols=275 Identities=27% Similarity=0.277 Sum_probs=209.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCe-EEEECCCCcccc------ccccccccccccccchhhhHHHHHhc-CcEEEc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGES-IGLVTPSGIVKA------VTKTVPVTKLLSDITVEETDANKFEG-LCTVIV 73 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~-v~lie~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~ 73 (454)
.+||+|||||||||+||.++.+. +.+ ++|+|.....++ ..++|.+.......++.++..++... ++++..
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~--~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~ 80 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARA--GLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE 80 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHc--CCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE
Confidence 68999999999999999999998 878 677776544322 23344444434444555555555555 888888
Q ss_pred ceEEEEeCcc--cEEEeccCcEEEecEEEEecCCCCCCCCCC-------CceeeeeccchHHHHHHHhhcCCeEEEEcCc
Q psy1545 74 DTVAAIDPRV--NCVITEKQNRIKYKTLCICTGASPRKIWYS-------PHVITIRDTDSVAVLQEKLKSAKKIVVIGNG 144 (454)
Q Consensus 74 ~~v~~i~~~~--~~v~~~~g~~i~~d~lviAtG~~p~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G 144 (454)
..+..++... ..|.++++. +++++||||||+.++.|.++ .+++.+ ...|. .+ .+|+++|||||
T Consensus 81 ~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc-~~cdg-~~-----~~k~v~ViGgG 152 (305)
T COG0492 81 DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYC-ATCDG-FF-----KGKDVVVIGGG 152 (305)
T ss_pred EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEe-eecCc-cc-----cCCeEEEEcCC
Confidence 8888888765 467776675 99999999999998888765 234333 33444 22 38899999999
Q ss_pred hhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccccccc
Q psy1545 145 GIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNL 222 (454)
Q Consensus 145 ~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (454)
.+++|.|..|. +.+||+++|++.+.+ .+.+.+++.+
T Consensus 153 ~sAve~Al~L~~~a~~Vtlv~r~~~~ra-------~~~~~~~l~~----------------------------------- 190 (305)
T COG0492 153 DSAVEEALYLSKIAKKVTLVHRRDEFRA-------EEILVERLKK----------------------------------- 190 (305)
T ss_pred HHHHHHHHHHHHhcCeEEEEecCcccCc-------CHHHHHHHHh-----------------------------------
Confidence 99999999997 888999999987654 3445555533
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecC--C--cEEecCEEEEeeccCcCcccccCCCCceecCCCceEecc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN--G--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNE 298 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~--g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~ 298 (454)
..+|++++++.+.++..++ ...+.+.+ + +++++|-+++++|..|+.+ ++...+. ++++|+|.||+
T Consensus 191 -----~~~i~~~~~~~i~ei~G~~----v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~-~~~~~~~-~~~~g~I~v~~ 259 (305)
T COG0492 191 -----NVKIEVLTNTVVKEILGDD----VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTE-LLKGLGV-LDENGYIVVDE 259 (305)
T ss_pred -----cCCeEEEeCCceeEEecCc----cceEEEEecCCceEEEEeceEEEecCCCCchH-HHhhccc-cCCCCcEEcCC
Confidence 1389999999999999864 23455554 3 4789999999999999998 8777666 78899999999
Q ss_pred ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 299 LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 299 ~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
.++||+|+|||+|||+... .++...|..+|-.||.++...+
T Consensus 260 ~~~TsvpGifAaGDv~~~~---------~rqi~ta~~~G~~Aa~~a~~~l 300 (305)
T COG0492 260 EMETSVPGIFAAGDVADKN---------GRQIATAAGDGAIAALSAERYL 300 (305)
T ss_pred CcccCCCCEEEeEeeccCc---------ccEEeehhhhHHHHHHHHHHHh
Confidence 9999999999999999865 2356678899999988876543
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=285.30 Aligned_cols=278 Identities=20% Similarity=0.243 Sum_probs=197.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEe
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAID 80 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~ 80 (454)
.++|+|||||+||+++|..|++. |++|+|+|+++.+++...+. ++....+.++.....+.+.+ +++++.+...
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~--G~~V~vie~~~~~GG~l~~g-ip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v--- 206 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKA--GHSVTVFEALHKPGGVVTYG-IPEFRLPKEIVVTEIKTLKKLGVTFRMNFLV--- 206 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCCCcEeeec-CCCccCCHHHHHHHHHHHHhCCcEEEeCCcc---
Confidence 36899999999999999999998 89999999987665433221 11111112333334455556 9998876543
Q ss_pred CcccEEEeccCcEEEecEEEEecCC-CCCCCCCC-CceeeeeccchHHHHHHH------------hhcCCeEEEEcCchh
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGA-SPRKIWYS-PHVITIRDTDSVAVLQEK------------LKSAKKIVVIGNGGI 146 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~-~p~~~~~~-~~~~~~~~~~~~~~l~~~------------~~~~~~vvVvG~G~~ 146 (454)
.+.+.+++. ...||+||||||+ .|+.++++ .....+.+..++...... ...+++++|||+|++
T Consensus 207 --~~~v~~~~~-~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~ 283 (449)
T TIGR01316 207 --GKTATLEEL-FSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNT 283 (449)
T ss_pred --CCcCCHHHH-HhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHH
Confidence 233444333 3579999999998 68888877 222222333333322111 124789999999999
Q ss_pred HHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccccccccc
Q psy1545 147 ATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHG 224 (454)
Q Consensus 147 g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (454)
|+|+|..+. |++||++.|+++.. +. ......+.+
T Consensus 284 a~d~A~~l~~~G~~Vtlv~~~~~~~---~~--~~~~~~~~l--------------------------------------- 319 (449)
T TIGR01316 284 AVDSARTALRLGAEVHCLYRRTRED---MT--ARVEEIAHA--------------------------------------- 319 (449)
T ss_pred HHHHHHHHHHcCCEEEEEeecCccc---CC--CCHHHHHHH---------------------------------------
Confidence 999999886 99999999876421 11 111112223
Q ss_pred CccCCceEEEeCceEEEEEcCCCCccceEEEec---------CC-----------cEEecCEEEEeeccCcCcccccCCC
Q psy1545 225 SSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---------NG-----------HTHACDIVVSAIGVVPNSNIQVHGT 284 (454)
Q Consensus 225 ~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---------~g-----------~~~~~D~vi~a~G~~p~~~~~~~~~ 284 (454)
++.||++++++.+.++..+++ +....+++. +| .++++|.||+|+|+.|+.. +++..
T Consensus 320 --~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~-~l~~~ 395 (449)
T TIGR01316 320 --EEEGVKFHFLCQPVEIIGDEE-GNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPI-MAETT 395 (449)
T ss_pred --HhCCCEEEeccCcEEEEEcCC-CeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCch-hhhcc
Confidence 348999999999999976432 223334332 22 3699999999999999987 88878
Q ss_pred CceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 285 PFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 285 ~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
+++++++|+|.||+++||+.|+|||+|||+..+ .++..|+.+|+.||.+|..
T Consensus 396 gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~----------~~v~~Ai~~G~~AA~~I~~ 447 (449)
T TIGR01316 396 RLKTSERGTIVVDEDQRTSIPGVFAGGDIILGA----------ATVIRAMGQGKRAAKSINE 447 (449)
T ss_pred CcccCCCCeEEeCCCCccCCCCEEEecCCCCCc----------HHHHHHHHHHHHHHHHHHh
Confidence 888888899999999999999999999998643 4678899999999999864
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=290.58 Aligned_cols=277 Identities=23% Similarity=0.296 Sum_probs=197.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccc---ccc--ccccchhhhHHHHHhc-CcEEEcce
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPV---TKL--LSDITVEETDANKFEG-LCTVIVDT 75 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~-~i~~~~~~ 75 (454)
.|||+||||||||++||..|++. +++|+|||++...+.+...... +.. .....+.....+.... +++++.++
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~--g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~~ 81 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRA--KLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQAE 81 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEeccE
Confidence 48999999999999999999998 8999999998765443322111 110 1111222223333444 89988889
Q ss_pred EEEEeCccc--EEEeccCcEEEecEEEEecCCCCCCCCCCC-------ceeeeeccchHHHHHHHhhcCCeEEEEcCchh
Q psy1545 76 VAAIDPRVN--CVITEKQNRIKYKTLCICTGASPRKIWYSP-------HVITIRDTDSVAVLQEKLKSAKKIVVIGNGGI 146 (454)
Q Consensus 76 v~~i~~~~~--~v~~~~g~~i~~d~lviAtG~~p~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~ 146 (454)
|+.++.+.. .+.+.++ .+.|++||||||++|+.|+++. .++.....+. ....+++++|||||++
T Consensus 82 V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~------~~~~g~~VvVIGgG~~ 154 (555)
T TIGR03143 82 VLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDG------EFFTGMDVFVIGGGFA 154 (555)
T ss_pred EEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecCh------hhcCCCEEEEECCCHH
Confidence 999887653 4555444 6899999999999999988872 1221111111 1224899999999999
Q ss_pred HHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccccccccc
Q psy1545 147 ATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHG 224 (454)
Q Consensus 147 g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (454)
|+|+|..|. |.+|+++++.+.+.. . ..+...+.
T Consensus 155 g~E~A~~L~~~g~~Vtli~~~~~~~~---~----~~~~~~~~-------------------------------------- 189 (555)
T TIGR03143 155 AAEEAVFLTRYASKVTVIVREPDFTC---A----KLIAEKVK-------------------------------------- 189 (555)
T ss_pred HHHHHHHHHccCCEEEEEEeCCcccc---C----HHHHHHHH--------------------------------------
Confidence 999999886 899999999876421 1 11112221
Q ss_pred CccCCceEEEeCceEEEEEcCCCCccceEEEe---cCCcE----EecCE----EEEeeccCcCcccccCCCCceecCCCc
Q psy1545 225 SSRDTKITIEYSCEVERIVDSEDDTCNAYVKL---TNGHT----HACDI----VVSAIGVVPNSNIQVHGTPFELAPDCG 293 (454)
Q Consensus 225 ~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~---~~g~~----~~~D~----vi~a~G~~p~~~~~~~~~~l~~~~~g~ 293 (454)
+..||++++++.|+++..++. ...+.+ .+|++ +++|. |++++|++|+.. ++.. ++.++++|+
T Consensus 190 --~~~gV~i~~~~~V~~i~~~~~---v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~-l~~~-~l~l~~~G~ 262 (555)
T TIGR03143 190 --NHPKIEVKFNTELKEATGDDG---LRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSE-LFKG-VVELDKRGY 262 (555)
T ss_pred --hCCCcEEEeCCEEEEEEcCCc---EEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChh-HHhh-hcccCCCCe
Confidence 236999999999999986541 222322 34643 23676 999999999998 7664 577888899
Q ss_pred eEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 294 IGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 294 i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
|.||+++||+.|+|||+|||+... ++.+..|..||+.||.+|...+
T Consensus 263 I~vd~~~~Ts~p~IyAaGDv~~~~---------~~~v~~A~~~G~~Aa~~i~~~l 308 (555)
T TIGR03143 263 IPTNEDMETNVPGVYAAGDLRPKE---------LRQVVTAVADGAIAATSAERYV 308 (555)
T ss_pred EEeCCccccCCCCEEEceeccCCC---------cchheeHHhhHHHHHHHHHHHH
Confidence 999999999999999999997532 2455679999999999987444
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=281.67 Aligned_cols=282 Identities=18% Similarity=0.230 Sum_probs=197.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccc-cccccchhhhHHHHHhc-CcEEEcceEEEE
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTK-LLSDITVEETDANKFEG-LCTVIVDTVAAI 79 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i 79 (454)
.+||+||||||||++||..|++. |++|+|+|+.+..++...+. .+. .++...+.....+++.+ +++++.+....
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~--G~~V~v~e~~~~~GG~l~~g-ip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~- 215 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKM--GYDVTIFEALHEPGGVLVYG-IPEFRLPKETVVKKEIENIKKLGVKIETNVVVG- 215 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEecCCCCCCeeeec-CCCccCCccHHHHHHHHHHHHcCCEEEcCCEEC-
Confidence 36899999999999999999998 89999999987665443321 111 11112233334455666 89987765331
Q ss_pred eCcccEEEeccC-cEEEecEEEEecCC-CCCCCCCC-CceeeeeccchHHHHHH-----------HhhcCCeEEEEcCch
Q psy1545 80 DPRVNCVITEKQ-NRIKYKTLCICTGA-SPRKIWYS-PHVITIRDTDSVAVLQE-----------KLKSAKKIVVIGNGG 145 (454)
Q Consensus 80 ~~~~~~v~~~~g-~~i~~d~lviAtG~-~p~~~~~~-~~~~~~~~~~~~~~l~~-----------~~~~~~~vvVvG~G~ 145 (454)
+.+.+++. +.+.||+||||||+ .|+.++++ .+...+.+..++..... ....+++++|||+|+
T Consensus 216 ----~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~ 291 (464)
T PRK12831 216 ----KTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGN 291 (464)
T ss_pred ----CcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcH
Confidence 22333332 34679999999999 58888887 22223344444443221 123579999999999
Q ss_pred hHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccc
Q psy1545 146 IATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLH 223 (454)
Q Consensus 146 ~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (454)
+|+|+|..+. |++|+++.|++... +.... ..+ ..+
T Consensus 292 va~d~A~~l~r~Ga~Vtlv~r~~~~~---m~a~~-~e~-~~a-------------------------------------- 328 (464)
T PRK12831 292 VAMDAARTALRLGAEVHIVYRRSEEE---LPARV-EEV-HHA-------------------------------------- 328 (464)
T ss_pred HHHHHHHHHHHcCCEEEEEeecCccc---CCCCH-HHH-HHH--------------------------------------
Confidence 9999999886 99999999865311 11111 111 112
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEec------------------CC--cEEecCEEEEeeccCcCcccccCC
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT------------------NG--HTHACDIVVSAIGVVPNSNIQVHG 283 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~------------------~g--~~~~~D~vi~a~G~~p~~~~~~~~ 283 (454)
++.||++++++.+.++..+++ +....+++. +| .++++|.||+|+|..|+.. ++..
T Consensus 329 ---~~eGV~i~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~-~~~~ 403 (464)
T PRK12831 329 ---KEEGVIFDLLTNPVEILGDEN-GWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPL-ISST 403 (464)
T ss_pred ---HHcCCEEEecccceEEEecCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChh-hhcc
Confidence 337999999999999875432 222223321 22 3699999999999999997 7765
Q ss_pred -CCceecCCCceEeccc-cccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 284 -TPFELAPDCGIGVNEL-MQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 284 -~~l~~~~~g~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
.++.++++|+|.||++ ++|+.|+|||+|||+..+ .++..|+.+|+.||.+|...+.
T Consensus 404 ~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~----------~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 404 TKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGA----------ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred cCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCc----------hHHHHHHHHHHHHHHHHHHHhc
Confidence 6888888899999988 999999999999998643 4667899999999999986554
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=282.93 Aligned_cols=278 Identities=22% Similarity=0.242 Sum_probs=202.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc---ccccc--ccccccchhhhHHHHHhc-CcEEEcc-
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK---TVPVT--KLLSDITVEETDANKFEG-LCTVIVD- 74 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~-~i~~~~~- 74 (454)
.+|++||||||||++||.+|++. |++++|+++. ..+.+.. .+.+. ......++.......+.+ +++++.+
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~--G~~v~li~~~-~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~ 287 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARK--GIRTGIVAER-FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQ 287 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCcEEEEecC-CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCC
Confidence 37999999999999999999998 9999999874 2221111 11110 011122333333444455 8888754
Q ss_pred eEEEEeCc--ccEEEeccCcEEEecEEEEecCCCCCCCCCCC-------ceeeeeccchHHHHHHHhhcCCeEEEEcCch
Q psy1545 75 TVAAIDPR--VNCVITEKQNRIKYKTLCICTGASPRKIWYSP-------HVITIRDTDSVAVLQEKLKSAKKIVVIGNGG 145 (454)
Q Consensus 75 ~v~~i~~~--~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~ 145 (454)
+|..++.. ...|.+.++..+.||++|+|||++|+.+++|. .++.....+. ...++++++|||+|+
T Consensus 288 ~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~------~~~~gk~VvVVGgG~ 361 (517)
T PRK15317 288 RASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDG------PLFKGKRVAVIGGGN 361 (517)
T ss_pred EEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCc------hhcCCCEEEEECCCH
Confidence 89888875 34566677788999999999999998887761 1211111111 112489999999999
Q ss_pred hHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccc
Q psy1545 146 IATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLH 223 (454)
Q Consensus 146 ~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (454)
+|+|+|..|+ +.+|+++++++.+.. ...+.+.+.
T Consensus 362 ~g~e~A~~L~~~~~~Vtlv~~~~~l~~-------~~~l~~~l~------------------------------------- 397 (517)
T PRK15317 362 SGVEAAIDLAGIVKHVTVLEFAPELKA-------DQVLQDKLR------------------------------------- 397 (517)
T ss_pred HHHHHHHHHHhcCCEEEEEEECccccc-------cHHHHHHHh-------------------------------------
Confidence 9999999997 899999998876532 123333332
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEecC---C--cEEecCEEEEeeccCcCcccccCCCCceecCCCceEecc
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN---G--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNE 298 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~---g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~ 298 (454)
+..||++++++.++++..++ +....+.+.+ | +++++|.+++++|++|+++ +++.. +.++++|+|.||+
T Consensus 398 ---~~~gI~i~~~~~v~~i~~~~--g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~-~l~~~-v~~~~~g~i~vd~ 470 (517)
T PRK15317 398 ---SLPNVTIITNAQTTEVTGDG--DKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTE-WLKGT-VELNRRGEIIVDA 470 (517)
T ss_pred ---cCCCcEEEECcEEEEEEcCC--CcEEEEEEEECCCCcEEEEEcCEEEEeECCccCch-HHhhh-eeeCCCCcEEECc
Confidence 12699999999999998764 2233455543 3 4699999999999999998 88766 7788889999999
Q ss_pred ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 299 LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 299 ~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
++||++|+|||+|||+..+ .+....|+.+|..||.++...+
T Consensus 471 ~l~Ts~p~IyAaGDv~~~~---------~k~~~~A~~eG~~Aa~~~~~~l 511 (517)
T PRK15317 471 RGATSVPGVFAAGDCTTVP---------YKQIIIAMGEGAKAALSAFDYL 511 (517)
T ss_pred CCCCCCCCEEECccccCCC---------CCEEEEhhhhHHHHHHHHHHHH
Confidence 9999999999999999764 2456679999999999987644
|
|
| >KOG1346|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=251.54 Aligned_cols=383 Identities=23% Similarity=0.311 Sum_probs=271.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccccccc---------------------------
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDI--------------------------- 55 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~--------------------------- 55 (454)
...+|||||.+..+++...+..+++.++.+|..++..+ +++|++++.+..+
T Consensus 179 vp~liigggtaAfaa~rai~s~da~A~vl~iseepelP--YmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~ 256 (659)
T KOG1346|consen 179 VPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP--YMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG 256 (659)
T ss_pred CceeEEcCCchhhhcccccccCCCCceEEeeccCccCc--ccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence 34789999999999998888888899999999887764 4666655533211
Q ss_pred -chhhhHHHHHhc-CcEEEcc-eEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC--------Cceeeeeccch
Q psy1545 56 -TVEETDANKFEG-LCTVIVD-TVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS--------PHVITIRDTDS 124 (454)
Q Consensus 56 -~~~~~~~~~~~~-~i~~~~~-~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~--------~~~~~~~~~~~ 124 (454)
.+..+.+..... +|.+.++ +|+.++.+.+.|.++||.+|.||+++||||.+|+..+.. ..+..++.+.|
T Consensus 257 FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~D 336 (659)
T KOG1346|consen 257 FFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPAD 336 (659)
T ss_pred ceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchH
Confidence 011111222222 8899888 999999999999999999999999999999999887643 56788899999
Q ss_pred HHHHHHHhhcCCeEEEEcCchhHHHHHHHhc------CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhh
Q psy1545 125 VAVLQEKLKSAKKIVVIGNGGIATELVHELS------NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFK 198 (454)
Q Consensus 125 ~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~------g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~ 198 (454)
+.++++.+..-+++.|||+|++|.|+|+.|. |.+|+-+-....- +...+.+++.+ +
T Consensus 337 F~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n--------m~kiLPeyls~-------w--- 398 (659)
T KOG1346|consen 337 FKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN--------MEKILPEYLSQ-------W--- 398 (659)
T ss_pred HHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC--------hhhhhHHHHHH-------H---
Confidence 9999998888899999999999999999884 6677765433222 23333333322 0
Q ss_pred hcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 199 RMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 199 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
-.+.+++.||.++.|..|.++..... .+.++++||.++..|+|++|+|..||.+
T Consensus 399 -----------------------t~ekir~~GV~V~pna~v~sv~~~~~---nl~lkL~dG~~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 399 -----------------------TIEKIRKGGVDVRPNAKVESVRKCCK---NLVLKLSDGSELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred -----------------------HHHHHHhcCceeccchhhhhhhhhcc---ceEEEecCCCeeeeeeEEEEecCCCchh
Confidence 01222458999999999999877652 5789999999999999999999999999
Q ss_pred cccCCCCceecCC-CceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceecc
Q psy1545 279 IQVHGTPFELAPD-CGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDF 357 (454)
Q Consensus 279 ~~~~~~~l~~~~~-g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~ 357 (454)
+++..|+++|++ |++.||..++.. .|||++||++......-+. +....|.+|.-.||.|+.||.+..+.. ..-
T Consensus 453 -la~~sgLeiD~~lGGfrvnaeL~ar-~NvwvAGdaacF~D~~LGr-RRVehhdhavvSGRLAGENMtgAakpy---~hq 526 (659)
T KOG1346|consen 453 -LAEASGLEIDEKLGGFRVNAELKAR-ENVWVAGDAACFEDGVLGR-RRVEHHDHAVVSGRLAGENMTGAAKPY---KHQ 526 (659)
T ss_pred -hcccccceeecccCcEEeeheeecc-cceeeecchhhhhcccccc-eeccccccceeeceecccccccccCCc---ccc
Confidence 999999999866 889999999864 8999999999875444333 334678889999999999999865421 110
Q ss_pred ceeeee-eeeeecCe--------EEEEeecccC---CcC--------CCCc--------eEE----------EeecC--C
Q psy1545 358 SFEMFT-HMTKFFGY--------KVILLGLFNG---QTL--------ENDY--------EIL----------LRVTR--G 397 (454)
Q Consensus 358 ~~~~~~-~~~~~~~~--------~~~~vG~~~~---~~~--------~~~~--------~~~----------~~~~~--~ 397 (454)
.+|+ .+.-..|+ .+-+||.+.. +.+ +.++ +.. +..++ .
T Consensus 527 --smFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~s~~~~~~~se~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~ 604 (659)
T KOG1346|consen 527 --SMFWSDLGPEIGYEAIGLVDSSLPTVGVFALPSSATRVDQLSESSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEA 604 (659)
T ss_pred --ceeeeccCcccccceeeecccCCCcceeeeccccccchhhhhhccCCCCccccccccccccccCCcCCCCCccCcccc
Confidence 0111 11000111 1112222110 000 0000 000 00111 1
Q ss_pred ccEEE---EEEECCeEEEEEEEcCCchHHHHHHHHhcCCCcchhh
Q psy1545 398 EEYIK---LVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIA 439 (454)
Q Consensus 398 ~~~~k---~~~~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~~ 439 (454)
..|=| +|.++++|+|+.++.--..+.+.+..|..+...+|+.
T Consensus 605 ~~ygKgViFYl~d~~iVGilLwN~Fnr~~~AR~II~d~kk~ddln 649 (659)
T KOG1346|consen 605 GNYGKGVIFYLKDDKIVGILLWNLFNRIGLARTIINDNKKYDDLN 649 (659)
T ss_pred cccCceEEEEecCCcEEEEEehhhhccchhhHHHhccccchhhHH
Confidence 22333 3338999999999988778888999999999999974
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-32 Score=270.24 Aligned_cols=281 Identities=19% Similarity=0.238 Sum_probs=195.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
++|+|||||+||+++|..|++. +++|+|+|+++..++...+. .+......++.....+.+.+ +++++.+....
T Consensus 141 ~~VvIIGgGpaGl~aA~~l~~~--g~~V~lie~~~~~gG~l~~g-ip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~--- 214 (457)
T PRK11749 141 KKVAVIGAGPAGLTAAHRLARK--GYDVTIFEARDKAGGLLRYG-IPEFRLPKDIVDREVERLLKLGVEIRTNTEVG--- 214 (457)
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCCCCcEeecc-CCCccCCHHHHHHHHHHHHHcCCEEEeCCEEC---
Confidence 6899999999999999999998 89999999998765443321 11111122333444455555 89987665431
Q ss_pred cccEEEeccCcEEEecEEEEecCCC-CCCCCCC-CceeeeeccchHHHHHHH------hhcCCeEEEEcCchhHHHHHHH
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGAS-PRKIWYS-PHVITIRDTDSVAVLQEK------LKSAKKIVVIGNGGIATELVHE 153 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~-p~~~~~~-~~~~~~~~~~~~~~l~~~------~~~~~~vvVvG~G~~g~e~a~~ 153 (454)
+.+.+++. .+.||+||+|||+. |+.++++ .....+.+..++...... +..+++++|||+|.+|+|+|..
T Consensus 215 --~~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~ 291 (457)
T PRK11749 215 --RDITLDEL-RAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAART 291 (457)
T ss_pred --CccCHHHH-HhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHH
Confidence 22333333 37899999999995 6766666 222222333333322211 1248999999999999999998
Q ss_pred hc--CC-cEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCc
Q psy1545 154 LS--NV-DIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTK 230 (454)
Q Consensus 154 l~--g~-~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~g 230 (454)
+. |. +|+++.+++... +... ....+.+ ++.|
T Consensus 292 l~~~G~~~Vtlv~~~~~~~---~~~~--~~~~~~~-----------------------------------------~~~G 325 (457)
T PRK11749 292 AKRLGAESVTIVYRRGREE---MPAS--EEEVEHA-----------------------------------------KEEG 325 (457)
T ss_pred HHHcCCCeEEEeeecCccc---CCCC--HHHHHHH-----------------------------------------HHCC
Confidence 86 76 899999865421 1111 1112233 3389
Q ss_pred eEEEeCceEEEEEcCCCCccceEEEec-------------------CCcEEecCEEEEeeccCcCcccccC-CCCceecC
Q psy1545 231 ITIEYSCEVERIVDSEDDTCNAYVKLT-------------------NGHTHACDIVVSAIGVVPNSNIQVH-GTPFELAP 290 (454)
Q Consensus 231 v~i~~~~~v~~i~~~~~~~~~~~v~~~-------------------~g~~~~~D~vi~a~G~~p~~~~~~~-~~~l~~~~ 290 (454)
|++++++.+.++..+++ ....+.+. +++++++|.|++|+|.+|+.. ++. ..++.+++
T Consensus 326 V~i~~~~~v~~i~~~~~--~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~-l~~~~~gl~~~~ 402 (457)
T PRK11749 326 VEFEWLAAPVEILGDEG--RVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPL-ILSTTPGLELNR 402 (457)
T ss_pred CEEEecCCcEEEEecCC--ceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCch-hhccccCccCCC
Confidence 99999999999986542 11122221 235799999999999999976 554 45678888
Q ss_pred CCceEecc-ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC
Q psy1545 291 DCGIGVNE-LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351 (454)
Q Consensus 291 ~g~i~vd~-~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 351 (454)
+|+|.||+ +++|+.|+|||+|||+..+ +++..|+.||+.||.+|...+.++
T Consensus 403 ~g~i~vd~~~~~Ts~~~VfA~GD~~~~~----------~~~~~A~~~G~~aA~~I~~~l~g~ 454 (457)
T PRK11749 403 WGTIIADDETGRTSLPGVFAGGDIVTGA----------ATVVWAVGDGKDAAEAIHEYLEGA 454 (457)
T ss_pred CCCEEeCCCCCccCCCCEEEeCCcCCCc----------hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999998 7899999999999998532 467789999999999998776553
|
|
| >KOG2495|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=253.28 Aligned_cols=287 Identities=18% Similarity=0.264 Sum_probs=223.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc----CcEEEcceEE
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG----LCTVIVDTVA 77 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~v~ 77 (454)
+.+|||+|+|.+|.+++..|-.. ..+|++|++.+++-+.+..|.....--+..-.-+....+.+ ++.++..+.+
T Consensus 55 Kk~vVVLGsGW~a~S~lk~ldts--~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~ 132 (491)
T KOG2495|consen 55 KKRVVVLGSGWGAISLLKKLDTS--LYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAECT 132 (491)
T ss_pred CceEEEEcCchHHHHHHHhcccc--ccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecccE
Confidence 36799999999999999999987 78999999999886655554433322222222233344433 6788899999
Q ss_pred EEeCcccEEEec----cC----cEEEecEEEEecCCCCCCCCCC---CceeeeeccchHHHHHHHhh-------------
Q psy1545 78 AIDPRVNCVITE----KQ----NRIKYKTLCICTGASPRKIWYS---PHVITIRDTDSVAVLQEKLK------------- 133 (454)
Q Consensus 78 ~i~~~~~~v~~~----~g----~~i~~d~lviAtG~~p~~~~~~---~~~~~~~~~~~~~~l~~~~~------------- 133 (454)
.+|++.+.|.++ ++ -.+.||+||+|+|+.+..+.+| ++.+.+...+|+.+++..+-
T Consensus 133 ~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~ 212 (491)
T KOG2495|consen 133 KIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSD 212 (491)
T ss_pred eecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCCh
Confidence 999999988764 33 3689999999999999998888 77777777888887755431
Q ss_pred ----cCCeEEEEcCchhHHHHHHHhc----------------CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCCh
Q psy1545 134 ----SAKKIVVIGNGGIATELVHELS----------------NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKP 193 (454)
Q Consensus 134 ----~~~~vvVvG~G~~g~e~a~~l~----------------g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~ 193 (454)
+--+++|||||++|+|+|.+|+ ..+||+++..+.+++ +||..+.+..++.+.+
T Consensus 213 eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~-mFdkrl~~yae~~f~~------ 285 (491)
T KOG2495|consen 213 EERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN-MFDKRLVEYAENQFVR------ 285 (491)
T ss_pred HHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH-HHHHHHHHHHHHHhhh------
Confidence 1237999999999999999885 248999999999888 5788777777777754
Q ss_pred hhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEEEee
Q psy1545 194 ETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAI 271 (454)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi~a~ 271 (454)
.||++..++.|..+.... +.+...+| +++++-+++|+|
T Consensus 286 -----------------------------------~~I~~~~~t~Vk~V~~~~-----I~~~~~~g~~~~iPYG~lVWat 325 (491)
T KOG2495|consen 286 -----------------------------------DGIDLDTGTMVKKVTEKT-----IHAKTKDGEIEEIPYGLLVWAT 325 (491)
T ss_pred -----------------------------------ccceeecccEEEeecCcE-----EEEEcCCCceeeecceEEEecC
Confidence 899999999999988764 55555666 689999999999
Q ss_pred ccCcCcccccCCCCceecCCC--ceEeccccc-cccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 272 GVVPNSNIQVHGTPFELAPDC--GIGVNELMQ-TSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 272 G~~p~~~~~~~~~~l~~~~~g--~i~vd~~~~-t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
|..|.. +.....-.+++.| ++.||++|| .+.+||||+|||+..+ ...++++.|.+||.++|+|+-.
T Consensus 326 G~~~rp--~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~-------~~~~tAQVA~QqG~yLAk~fn~ 394 (491)
T KOG2495|consen 326 GNGPRP--VIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQR-------GLKPTAQVAEQQGAYLAKNFNK 394 (491)
T ss_pred CCCCch--hhhhHhhcCCccCceeeeeeceeeccCcCceEEeccccccc-------cCccHHHHHHHHHHHHHHHHHH
Confidence 999876 5555444455556 899999999 7899999999999432 1346899999999999998753
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=281.39 Aligned_cols=279 Identities=16% Similarity=0.162 Sum_probs=192.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
.+|+||||||||++||..|++. |++|+|+|+.+.+++...+. .+....+.+......+.+.+ +++++.+....
T Consensus 540 KkVaIIGgGPAGLsAA~~Lar~--G~~VtV~Ek~~~~GG~lr~~-IP~~Rlp~evL~~die~l~~~GVe~~~gt~Vd--- 613 (1019)
T PRK09853 540 KKVAVIGAGPAGLAAAYFLARA--GHPVTVFEREENAGGVVKNI-IPQFRIPAELIQHDIEFVKAHGVKFEFGCSPD--- 613 (1019)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCeEEEEecccccCcceeee-cccccccHHHHHHHHHHHHHcCCEEEeCceeE---
Confidence 5899999999999999999998 89999999988776543321 11111112233334455556 89987664332
Q ss_pred cccEEEeccCcEEEecEEEEecCCCC-CCCCCCCceeeeeccch-HHHH---HHHhhcCCeEEEEcCchhHHHHHHHhc-
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGASP-RKIWYSPHVITIRDTDS-VAVL---QEKLKSAKKIVVIGNGGIATELVHELS- 155 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~p-~~~~~~~~~~~~~~~~~-~~~l---~~~~~~~~~vvVvG~G~~g~e~a~~l~- 155 (454)
+.+++.....||+||||||+++ +.++++.....+.+..+ +... .+.+..+++|+|||||++|+|+|..+.
T Consensus 614 ----i~le~L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~R 689 (1019)
T PRK09853 614 ----LTVEQLKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALR 689 (1019)
T ss_pred ----EEhhhheeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHh
Confidence 2333334567999999999974 44455511111122222 2222 222345899999999999999998764
Q ss_pred --C-CcEEEEEeCCC-ccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCce
Q psy1545 156 --N-VDIVWVVKDKH-ISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKI 231 (454)
Q Consensus 156 --g-~~V~~i~~~~~-~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv 231 (454)
| .+|+++.|++. .++ ...+.+.+.+ +.||
T Consensus 690 lgGakeVTLVyRr~~~~MP-----A~~eEle~Al------------------------------------------eeGV 722 (1019)
T PRK09853 690 VPGVEKVTVVYRRTKQEMP-----AWREEYEEAL------------------------------------------EDGV 722 (1019)
T ss_pred cCCCceEEEEEccCccccc-----ccHHHHHHHH------------------------------------------HcCC
Confidence 4 48999998763 222 1122222222 2689
Q ss_pred EEEeCceEEEEEcCCC-------------CccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEecc
Q psy1545 232 TIEYSCEVERIVDSED-------------DTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNE 298 (454)
Q Consensus 232 ~i~~~~~v~~i~~~~~-------------~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~ 298 (454)
++++++.+.++..++. .++...+...++.++++|.||+|+|.+|+.+ ++...|+.++++|++.||+
T Consensus 723 e~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pnte-lle~~GL~ld~~G~I~VDe 801 (1019)
T PRK09853 723 EFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTE-LLKANGIPLDKKGWPVVDA 801 (1019)
T ss_pred EEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChh-HHHhcCccccCCCCEEeCC
Confidence 9998888888864221 0111112223346899999999999999998 8888888888889999999
Q ss_pred ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 299 LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 299 ~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
++||+.|+|||+|||+..+ .++..|+.||+.||++|++...
T Consensus 802 tlqTs~pgVFAaGD~a~Gp----------~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 802 NGETSLTNVYMIGDVQRGP----------STIVAAIADARRAADAILSREG 842 (1019)
T ss_pred CcccCCCCEEEEeccccCc----------hHHHHHHHHHHHHHHHHhhhcC
Confidence 9999999999999998643 4667899999999999998654
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=284.78 Aligned_cols=281 Identities=20% Similarity=0.233 Sum_probs=198.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
++|+||||||||++||..|++. |++|+|+|+.+.+++...+. .+....+.++.....+.+.+ +++++.+...
T Consensus 432 ~~V~IIGaGpAGl~aA~~l~~~--G~~V~v~e~~~~~GG~l~~g-ip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v---- 504 (752)
T PRK12778 432 KKVAVIGSGPAGLSFAGDLAKR--GYDVTVFEALHEIGGVLKYG-IPEFRLPKKIVDVEIENLKKLGVKFETDVIV---- 504 (752)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCeEEEEecCCCCCCeeeec-CCCCCCCHHHHHHHHHHHHHCCCEEECCCEE----
Confidence 5899999999999999999998 99999999987665544331 11111112233344455666 9998876543
Q ss_pred cccEEEeccCcEEEecEEEEecCC-CCCCCCCC-CceeeeeccchHHHHHHH-----------hhcCCeEEEEcCchhHH
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGA-SPRKIWYS-PHVITIRDTDSVAVLQEK-----------LKSAKKIVVIGNGGIAT 148 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~-~p~~~~~~-~~~~~~~~~~~~~~l~~~-----------~~~~~~vvVvG~G~~g~ 148 (454)
.+.+++++.....||+||||||+ .|+.++++ .+...+.+..++...... ...+++++|||||++|+
T Consensus 505 -~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~ 583 (752)
T PRK12778 505 -GKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAM 583 (752)
T ss_pred -CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHH
Confidence 23355544445779999999999 58888887 333333444444432211 12468999999999999
Q ss_pred HHHHHhc--CCc-EEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccC
Q psy1545 149 ELVHELS--NVD-IVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGS 225 (454)
Q Consensus 149 e~a~~l~--g~~-V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 225 (454)
|+|..+. |++ ||++++++... +.... ..+ ..+
T Consensus 584 d~A~~~~r~Ga~~Vtlv~r~~~~~---~~~~~-~e~-~~~---------------------------------------- 618 (752)
T PRK12778 584 DSARTAKRLGAERVTIVYRRSEEE---MPARL-EEV-KHA---------------------------------------- 618 (752)
T ss_pred HHHHHHHHcCCCeEEEeeecCccc---CCCCH-HHH-HHH----------------------------------------
Confidence 9999886 887 99999875411 11111 111 122
Q ss_pred ccCCceEEEeCceEEEEEcCCCCccceEEEec---------C---------C--cEEecCEEEEeeccCcCcccccCC-C
Q psy1545 226 SRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---------N---------G--HTHACDIVVSAIGVVPNSNIQVHG-T 284 (454)
Q Consensus 226 l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---------~---------g--~~~~~D~vi~a~G~~p~~~~~~~~-~ 284 (454)
++.||++++++.+.++..+++ +....+++. + | .++++|.||+|+|+.|+.. ++.. .
T Consensus 619 -~~~GV~i~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~-l~~~~~ 695 (752)
T PRK12778 619 -KEEGIEFLTLHNPIEYLADEK-GWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPL-VPSSIP 695 (752)
T ss_pred -HHcCCEEEecCcceEEEECCC-CEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCcc-cccccc
Confidence 337999999999988875432 223333331 1 2 3699999999999999987 6554 3
Q ss_pred CceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 285 PFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 285 ~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
++.++++|+|.||++++|+.|+|||+|||+..+ .++..|+.+|+.||.+|...+.
T Consensus 696 gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~----------~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 696 GLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGG----------ATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CceECCCCCEEeCCCCCCCCCCEEEeCCccCCc----------HHHHHHHHHHHHHHHHHHHHhc
Confidence 788888899999999999999999999998643 4677899999999999987554
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=258.05 Aligned_cols=282 Identities=22% Similarity=0.211 Sum_probs=191.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+|+|||||++|+++|..|++. +.+|+++|+.+.+++..... .+......+......+.+.+ +++++.+ .+..++
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~gg~~~~~-~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~ 95 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACL--GYEVHVYDKLPEPGGLMLFG-IPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGE 95 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCCCceeeec-CcccccCHHHHHHHHHHHHhCCeEEecCcEEeecc
Confidence 5899999999999999999998 89999999988765433221 11111111112223344555 8888766 443332
Q ss_pred C----cc-----cEEEeccCcEEEecEEEEecCC-CCCCCCCC-Cceeeeeccch-HHHHHHH---------h--hcCCe
Q psy1545 81 P----RV-----NCVITEKQNRIKYKTLCICTGA-SPRKIWYS-PHVITIRDTDS-VAVLQEK---------L--KSAKK 137 (454)
Q Consensus 81 ~----~~-----~~v~~~~g~~i~~d~lviAtG~-~p~~~~~~-~~~~~~~~~~~-~~~l~~~---------~--~~~~~ 137 (454)
. .. ..+.. ++..+.||+||||||+ .|+.|+++ .+...+.+..+ +..+... . ..+++
T Consensus 96 ~~~~~~~~~~~~~~~~~-~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 174 (352)
T PRK12770 96 PLHEEEGDEFVERIVSL-EELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKK 174 (352)
T ss_pred ccccccccccccccCCH-HHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhccccccccccccccCCCE
Confidence 2 00 11112 1224789999999999 47777777 22222222222 2222110 0 12589
Q ss_pred EEEEcCchhHHHHHHHhc--CCc-EEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCC
Q psy1545 138 IVVIGNGGIATELVHELS--NVD-IVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGP 214 (454)
Q Consensus 138 vvVvG~G~~g~e~a~~l~--g~~-V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 214 (454)
++|||+|++|+|+|..+. |.+ |+++++++... .+ ........+
T Consensus 175 vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~----~~-~~~~~~~~l----------------------------- 220 (352)
T PRK12770 175 VVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINE----AP-AGKYEIERL----------------------------- 220 (352)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhh----CC-CCHHHHHHH-----------------------------
Confidence 999999999999999875 786 99999875421 11 112233334
Q ss_pred ccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEe--------------------cCCcEEecCEEEEeeccC
Q psy1545 215 DWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL--------------------TNGHTHACDIVVSAIGVV 274 (454)
Q Consensus 215 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~--------------------~~g~~~~~D~vi~a~G~~ 274 (454)
+++||++++++.+.+++..+. ...+++ .+++++++|.|++++|++
T Consensus 221 ------------~~~gi~i~~~~~v~~i~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~ 285 (352)
T PRK12770 221 ------------IARGVEFLELVTPVRIIGEGR---VEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEI 285 (352)
T ss_pred ------------HHcCCEEeeccCceeeecCCc---EeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccC
Confidence 338999999999999876531 222322 123579999999999999
Q ss_pred cCcccccCC-CCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 275 PNSNIQVHG-TPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 275 p~~~~~~~~-~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
|+.. +... .++.++++|+|.||++++|+.|+|||+|||+..+ .....|+.||+.||.+|...+
T Consensus 286 p~~~-l~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 286 PTPP-FAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGP----------SKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred CCch-hhhcccCceecCCCcEeeCCCcccCCCCEEEEcccccCc----------chHHHHHHHHHHHHHHHHHHH
Confidence 9987 6655 6788888899999999999999999999998743 467789999999999997654
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-31 Score=280.11 Aligned_cols=282 Identities=17% Similarity=0.194 Sum_probs=199.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
.+|+|||||||||+||..|++. |++|+|+|+.+..++...+. .+....+.++.....+.+.. +++|..+....
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~--G~~VtVfE~~~~~GG~l~yG-IP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG--- 380 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVE--GFPVTVFEAFHDLGGVLRYG-IPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG--- 380 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCCCCceEEcc-CCCCcChHHHHHHHHHHHHhhcCeEEEeEEec---
Confidence 6899999999999999999998 99999999998777654432 11111122344445556666 99987664432
Q ss_pred cccEEEeccCcEEEecEEEEecCCC-CCCCCCC-CceeeeeccchHHHHHHHh-------------hcCCeEEEEcCchh
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGAS-PRKIWYS-PHVITIRDTDSVAVLQEKL-------------KSAKKIVVIGNGGI 146 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~-p~~~~~~-~~~~~~~~~~~~~~l~~~~-------------~~~~~vvVvG~G~~ 146 (454)
+.+++++.....||+|+||||+. |+.+++| .+..++++..+++...... ..+++|+|||||.+
T Consensus 381 --~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~t 458 (944)
T PRK12779 381 --KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNT 458 (944)
T ss_pred --cEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHH
Confidence 34666555566899999999994 8888888 3334444555554322110 14689999999999
Q ss_pred HHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccccccccc
Q psy1545 147 ATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHG 224 (454)
Q Consensus 147 g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (454)
|+|+|..+. |++|+++.|++.. ..|.....+...
T Consensus 459 A~D~A~ta~R~Ga~Vtlv~rr~~~----~mpa~~~e~~~a---------------------------------------- 494 (944)
T PRK12779 459 AMDAARTAKRLGGNVTIVYRRTKS----EMPARVEELHHA---------------------------------------- 494 (944)
T ss_pred HHHHHHHHHHcCCEEEEEEecCcc----cccccHHHHHHH----------------------------------------
Confidence 999999875 8899999987531 111111112111
Q ss_pred CccCCceEEEeCceEEEEEcCCCCccceEEEe---------c--------CC--cEEecCEEEEeeccCcCcccccC-CC
Q psy1545 225 SSRDTKITIEYSCEVERIVDSEDDTCNAYVKL---------T--------NG--HTHACDIVVSAIGVVPNSNIQVH-GT 284 (454)
Q Consensus 225 ~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~---------~--------~g--~~~~~D~vi~a~G~~p~~~~~~~-~~ 284 (454)
.+.||++++++.++++..+++++....+++ . +| .++++|.||+|+|+.|+.. +.. ..
T Consensus 495 --~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~-l~~~~~ 571 (944)
T PRK12779 495 --LEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPI-MKDAEP 571 (944)
T ss_pred --HHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChh-hhhccc
Confidence 237999999999999876532112222221 1 23 4699999999999999875 432 34
Q ss_pred CceecCCCceEecc-ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 285 PFELAPDCGIGVNE-LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 285 ~l~~~~~g~i~vd~-~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
+++++++|.|.||+ +++|+.|+|||+|||+.++ .+...|+.+|+.||.+|...+.
T Consensus 572 gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~----------~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 572 GLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGG----------STAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred CceECCCCCEEECCCCCccCCCCEEEEEcCCCCh----------HHHHHHHHHHHHHHHHHHHHhc
Confidence 68888889999996 5889999999999998743 4667899999999999986554
|
|
| >KOG2755|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-32 Score=235.84 Aligned_cols=314 Identities=38% Similarity=0.693 Sum_probs=242.0
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDPR 82 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~~ 82 (454)
+.+|||||.||.+||..|+...|..+|+|+..++......++...++.+..|++.++....+.. --+++. .|..++..
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~-~v~~~~s~ 79 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLN-DVVTWDSS 79 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHH-hhhhhccc
Confidence 3689999999999999999998999999999999998888888888878888877665555543 113333 48888888
Q ss_pred ccEEEeccCcEEEecEEEEecCCCCCCCC--CCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhcCCcEE
Q psy1545 83 VNCVITEKQNRIKYKTLCICTGASPRKIW--YSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIV 160 (454)
Q Consensus 83 ~~~v~~~~g~~i~~d~lviAtG~~p~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~g~~V~ 160 (454)
++.+.+++|.++.|++|++|||++|..-. +.+.+..+++.+.+..++..+.+.|.|+|+|.|-+++|++.++...+|+
T Consensus 80 ehci~t~~g~~~ky~kKOG~tg~kPklq~E~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~~nv~ 159 (334)
T KOG2755|consen 80 EHCIHTQNGEKLKYFKLCLCTGYKPKLQVEGINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKILNVT 159 (334)
T ss_pred cceEEecCCceeeEEEEEEecCCCcceeecCCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhcceeE
Confidence 99999999999999999999999986542 2366778889899999999999999999999999999999999999999
Q ss_pred EEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccc-cC-----CCCCCCCCCccccccccccCcc--CCceE
Q psy1545 161 WVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYN-TG-----GEKGPSLGPDWHTQVNLHGSSR--DTKIT 232 (454)
Q Consensus 161 ~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~~l~--~~gv~ 232 (454)
|....+.+...|+||++++.+...++. ...+.....+++++. .. ...++.++|+|..+..+....+ ++-+.
T Consensus 160 w~ikd~~IsaTFfdpGaaef~~i~l~a-~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~ 238 (334)
T KOG2755|consen 160 WKIKDEGISATFFDPGAAEFYDINLRA-DRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLT 238 (334)
T ss_pred EEecchhhhhcccCccHHHHhHhhhhc-ccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhH
Confidence 999999999999999999999888843 334444444444444 11 2478899999999877654442 22233
Q ss_pred EEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCceeec
Q psy1545 233 IEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAA 310 (454)
Q Consensus 233 i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~ 310 (454)
...++-+......+. ..........+ ..+.||.+++|+|..||.+ +.-...+...++|++.||+.|+|+.|++||+
T Consensus 239 ~l~~~~~~~~d~~d~-~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e-~~~~~~lq~~edggikvdd~m~tslpdvFa~ 316 (334)
T KOG2755|consen 239 YLRNCVITSTDTSDN-LSVHYMDKEKMADNQLTCDFIVSATGVTPNSE-WAMNKMLQITEDGGIKVDDAMETSLPDVFAA 316 (334)
T ss_pred Hhhhheeeeccchhh-cccccccccccccceeeeeEEEeccccCcCce-EEecChhhhccccCeeehhhccccccceeee
Confidence 333333322222221 01111112222 4678999999999999998 7766667788899999999999999999999
Q ss_pred CcccccCCccc
Q psy1545 311 GDVCTPSWDLA 321 (454)
Q Consensus 311 GD~~~~~~~~~ 321 (454)
||++...++++
T Consensus 317 gDvctt~~~~s 327 (334)
T KOG2755|consen 317 GDVCTTTWEPS 327 (334)
T ss_pred cceeccCCCCc
Confidence 99887654443
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=262.49 Aligned_cols=292 Identities=16% Similarity=0.164 Sum_probs=191.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
++|+|||||+||+++|..|++. |++|+|+|+.+..++...+. .+......+......+.+.+ +++++.+.....+.
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~--G~~V~vie~~~~~GG~l~~g-ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~ 220 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARA--GHKVTVFERADRIGGLLRYG-IPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDI 220 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCCCCceeeec-CCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCcC
Confidence 6899999999999999999998 89999999998776543321 11111122233334455566 89987665443321
Q ss_pred cccEEEeccCcEEEecEEEEecCCC-CCCCCCC-CceeeeeccchHHHHH-----------HHhhcCCeEEEEcCchhHH
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGAS-PRKIWYS-PHVITIRDTDSVAVLQ-----------EKLKSAKKIVVIGNGGIAT 148 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~-p~~~~~~-~~~~~~~~~~~~~~l~-----------~~~~~~~~vvVvG~G~~g~ 148 (454)
.. +.....||+||+|||+. |+.++++ .+..++.+..++..-. .....+++++|||+|++|+
T Consensus 221 -----~~-~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~ 294 (471)
T PRK12810 221 -----TA-EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGM 294 (471)
T ss_pred -----CH-HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHH
Confidence 11 11235799999999997 7777776 2222222222221110 0112479999999999999
Q ss_pred HHHHHhc--CC-cEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccC
Q psy1545 149 ELVHELS--NV-DIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGS 225 (454)
Q Consensus 149 e~a~~l~--g~-~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 225 (454)
|+|..+. |. +|+++++.+.......+......+...+ ..+.
T Consensus 295 e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~ 338 (471)
T PRK12810 295 DCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKL------------------------------------EVSN 338 (471)
T ss_pred HHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHH------------------------------------HHHH
Confidence 9997654 54 7886654432211100000000000000 0111
Q ss_pred ccCCceEEEeCceEEEEEcCCCCccceEEEe-----cCC---------cEEecCEEEEeeccCcCcccccCCCCceecCC
Q psy1545 226 SRDTKITIEYSCEVERIVDSEDDTCNAYVKL-----TNG---------HTHACDIVVSAIGVVPNSNIQVHGTPFELAPD 291 (454)
Q Consensus 226 l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~-----~~g---------~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~ 291 (454)
+++.||++++++.++++...+ +....|++ .+| .++++|.||+|+|.+|+...+++..+++++++
T Consensus 339 ~~~~GV~i~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~ 416 (471)
T PRK12810 339 AHEEGVEREFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDER 416 (471)
T ss_pred HHHcCCeEEeccCceEEEccC--CEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCC
Confidence 234799999999999997533 22333332 122 57999999999999998532777778888888
Q ss_pred CceEec-cccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC
Q psy1545 292 CGIGVN-ELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351 (454)
Q Consensus 292 g~i~vd-~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 351 (454)
|++.+| ++++|+.|+|||+|||+..+ .++..|+.||+.||.+|...+.++
T Consensus 417 g~i~vd~~~~~Ts~~gVfa~GD~~~g~----------~~~~~Av~~G~~AA~~i~~~L~g~ 467 (471)
T PRK12810 417 GRVAAPDNAYQTSNPKVFAAGDMRRGQ----------SLVVWAIAEGRQAARAIDAYLMGS 467 (471)
T ss_pred CCEEeCCCcccCCCCCEEEccccCCCc----------hhHHHHHHHHHHHHHHHHHHHhcC
Confidence 999998 79999999999999998743 466789999999999998776554
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=270.32 Aligned_cols=277 Identities=17% Similarity=0.188 Sum_probs=186.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
++|+||||||||++||+.|++. |++|+|+|+++..++...+. .+....+.+......+.+.+ +++++.+.. .
T Consensus 538 kkVaIIGGGPAGLSAA~~LAr~--G~~VTV~Ek~~~lGG~l~~~-IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~----~ 610 (1012)
T TIGR03315 538 HKVAVIGAGPAGLSAGYFLARA--GHPVTVFEKKEKPGGVVKNI-IPEFRISAESIQKDIELVKFHGVEFKYGCS----P 610 (1012)
T ss_pred CcEEEECCCHHHHHHHHHHHHC--CCeEEEEecccccCceeeec-ccccCCCHHHHHHHHHHHHhcCcEEEEecc----c
Confidence 6899999999999999999998 89999999998776544321 11111112233333445555 888876521 1
Q ss_pred cccEEEeccCcEEEecEEEEecCCCC-CCCCCC-CceeeeeccchHHHHHH---HhhcCCeEEEEcCchhHHHHHHHhc-
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGASP-RKIWYS-PHVITIRDTDSVAVLQE---KLKSAKKIVVIGNGGIATELVHELS- 155 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~p-~~~~~~-~~~~~~~~~~~~~~l~~---~~~~~~~vvVvG~G~~g~e~a~~l~- 155 (454)
.+.+.+.....||+||||||+++ ..++++ .....+...+.+..+.. ....+++|+|||||++|+|+|..+.
T Consensus 611 ---d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~R 687 (1012)
T TIGR03315 611 ---DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALR 687 (1012)
T ss_pred ---ceEhhhhhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHH
Confidence 12233334567999999999974 444554 21111222222222211 1235899999999999999998764
Q ss_pred --CC-cEEEEEeCCC-ccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCce
Q psy1545 156 --NV-DIVWVVKDKH-ISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKI 231 (454)
Q Consensus 156 --g~-~V~~i~~~~~-~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv 231 (454)
|. +|+++.|+.. .++. ..+.+.+.+ +.||
T Consensus 688 l~Ga~kVtLVyRr~~~~Mpa-----~~eEl~~al------------------------------------------eeGV 720 (1012)
T TIGR03315 688 VPGVEKVTVVYRRTKRYMPA-----SREELEEAL------------------------------------------EDGV 720 (1012)
T ss_pred hCCCceEEEEEccCcccccc-----CHHHHHHHH------------------------------------------HcCC
Confidence 64 7999998763 2221 111222221 2688
Q ss_pred EEEeCceEEEEEcCC------------CCccceEEEecCC--cEEecCEEEEeeccCcCcccccCCCCceecCCCceEec
Q psy1545 232 TIEYSCEVERIVDSE------------DDTCNAYVKLTNG--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVN 297 (454)
Q Consensus 232 ~i~~~~~v~~i~~~~------------~~~~~~~v~~~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd 297 (454)
+++++..+.++..+. ..++. ....+| .++++|.||+|+|..|+.+ +++..++.++.+|++.||
T Consensus 721 e~~~~~~p~~I~~g~l~v~~~~l~~~d~sGr~--~~v~~Gee~~I~aD~VIvAiG~~Pnt~-lle~~GL~ld~~G~I~VD 797 (1012)
T TIGR03315 721 DFKELLSPESFEDGTLTCEVMKLGEPDASGRR--RPVGTGETVDLPADTVIAAVGEQVDTD-LLQKNGIPLDEYGWPVVN 797 (1012)
T ss_pred EEEeCCceEEEECCeEEEEEEEeecccCCCce--eeecCCCeEEEEeCEEEEecCCcCChH-HHHhcCcccCCCCCEEeC
Confidence 888888777776211 00000 011223 3689999999999999998 888888888888999999
Q ss_pred cc-cccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 298 EL-MQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 298 ~~-~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
++ ++|+.|+|||+|||+..+ ..+..|+.||+.||.+|++...
T Consensus 798 ~~~~~Ts~pgVFAaGD~a~GP----------~tVv~AIaqGr~AA~nIl~~~~ 840 (1012)
T TIGR03315 798 QATGETNITNVFVIGDANRGP----------ATIVEAIADGRKAANAILSREG 840 (1012)
T ss_pred CCCCccCCCCEEEEeCcCCCc----------cHHHHHHHHHHHHHHHHhcccc
Confidence 86 899999999999998643 4667899999999999997643
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=273.29 Aligned_cols=283 Identities=16% Similarity=0.192 Sum_probs=195.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
++|+||||||||++||..|+++ |++|+|+|+.+..++...+ ..+......++.....+.+.+ +++++.+.+...
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~--G~~VtV~E~~~~~GG~l~~-gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~-- 505 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKY--GVDVTVYEALHVVGGVLQY-GIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK-- 505 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCCcceeec-cCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC--
Confidence 5899999999999999999998 9999999999877654433 111112223444455666666 999887654322
Q ss_pred cccEEEeccCc-EEEecEEEEecCCC-CCCCCCC-CceeeeeccchHHHHHHH------------hhcCCeEEEEcCchh
Q psy1545 82 RVNCVITEKQN-RIKYKTLCICTGAS-PRKIWYS-PHVITIRDTDSVAVLQEK------------LKSAKKIVVIGNGGI 146 (454)
Q Consensus 82 ~~~~v~~~~g~-~i~~d~lviAtG~~-p~~~~~~-~~~~~~~~~~~~~~l~~~------------~~~~~~vvVvG~G~~ 146 (454)
.+++++-. ...||+||||||+. |+.+++| .+...+.+..+++...+. ...+++|+|||||++
T Consensus 506 ---~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~t 582 (1006)
T PRK12775 506 ---TFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNT 582 (1006)
T ss_pred ---ccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHH
Confidence 23322211 24699999999995 8888887 222233344444433221 124799999999999
Q ss_pred HHHHHHHhc--CC-cEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccc
Q psy1545 147 ATELVHELS--NV-DIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLH 223 (454)
Q Consensus 147 g~e~a~~l~--g~-~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (454)
|+++|..+. |+ .|+++.|+.... +... ... .+.+
T Consensus 583 A~D~A~~a~rlGa~~Vtiv~rr~~~e---m~a~-~~e-~~~a-------------------------------------- 619 (1006)
T PRK12775 583 AMDCLRVAKRLGAPTVRCVYRRSEAE---APAR-IEE-IRHA-------------------------------------- 619 (1006)
T ss_pred HHHHHHHHHHcCCCEEEEEeecCccc---CCCC-HHH-HHHH--------------------------------------
Confidence 999998775 76 588888754321 1111 010 1122
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEec-----------------CC--cEEecCEEEEeeccCcCcccccCC-
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT-----------------NG--HTHACDIVVSAIGVVPNSNIQVHG- 283 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~-----------------~g--~~~~~D~vi~a~G~~p~~~~~~~~- 283 (454)
++.||++++++.+.++..+++ +....+++. +| .++++|.||+|+|..|+.. ++..
T Consensus 620 ---~eeGI~~~~~~~p~~i~~~~~-G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~-~~~~~ 694 (1006)
T PRK12775 620 ---KEEGIDFFFLHSPVEIYVDAE-GSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPI-ITQST 694 (1006)
T ss_pred ---HhCCCEEEecCCcEEEEeCCC-CeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChh-hhhcc
Confidence 348999999999999875432 223333321 12 3699999999999999987 6544
Q ss_pred CCceecCCCceEecc-----ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC
Q psy1545 284 TPFELAPDCGIGVNE-----LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351 (454)
Q Consensus 284 ~~l~~~~~g~i~vd~-----~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 351 (454)
.++.++.+|.|.+|+ +++|++|+|||+|||+.++ .++..|+.+|+.||.+|...+.+.
T Consensus 695 ~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~----------~~vv~Ai~~Gr~AA~~I~~~L~~~ 757 (1006)
T PRK12775 695 PGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGG----------ATVILAMGAGRRAARSIATYLRLG 757 (1006)
T ss_pred CCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCc----------cHHHHHHHHHHHHHHHHHHHHhcC
Confidence 367888889999996 7899999999999998643 466789999999999998766543
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-28 Score=243.18 Aligned_cols=380 Identities=22% Similarity=0.227 Sum_probs=268.2
Q ss_pred EEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccc--ccccccccccchhhhHHHHHhc-CcEEEc-ceEEEEe
Q psy1545 5 YLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKT--VPVTKLLSDITVEETDANKFEG-LCTVIV-DTVAAID 80 (454)
Q Consensus 5 vvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~i~~~~-~~v~~i~ 80 (454)
++|||+|++|+++|..+++..++.+++++..+....+.... ..+................... ++.+.. .+|+.++
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id 80 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID 80 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence 58999999999999999998888899988877654322111 1111111111111111112223 788765 4899999
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCCCCCCCC--CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--C
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASPRKIWYS--PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--N 156 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g 156 (454)
+..+.+.+.++ .+.||+|++|||++|..++.. ..++..+..++...+.......++++|+|+|++|+|+|..+. |
T Consensus 81 ~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G 159 (415)
T COG0446 81 PENKVVLLDDG-EIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRG 159 (415)
T ss_pred CCCCEEEECCC-cccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcC
Confidence 99999999888 899999999999999888632 668888888888888876655789999999999999999986 9
Q ss_pred CcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeC
Q psy1545 157 VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYS 236 (454)
Q Consensus 157 ~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~ 236 (454)
.+|++++..+++.++.+.++..+.+.+.+.+ .||+++++
T Consensus 160 ~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~-----------------------------------------~gi~~~~~ 198 (415)
T COG0446 160 KKVTLIEAADRLGGQLLDPEVAEELAELLEK-----------------------------------------YGVELLLG 198 (415)
T ss_pred CeEEEEEcccccchhhhhHHHHHHHHHHHHH-----------------------------------------CCcEEEeC
Confidence 9999999999998863326666666666654 89999999
Q ss_pred ceEEEEEcCCCCccceE--EEecCCcEEecCEEEEeeccCcCcccccCCCCc-eecCCCceEeccccccc-cCceeecCc
Q psy1545 237 CEVERIVDSEDDTCNAY--VKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPF-ELAPDCGIGVNELMQTS-ISNVYAAGD 312 (454)
Q Consensus 237 ~~v~~i~~~~~~~~~~~--v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l-~~~~~g~i~vd~~~~t~-~~~Iya~GD 312 (454)
..+.+++...+ .... +...++..+++|.+++++|.+|+.. +....+. ....+|++.||++++|+ .++|||+||
T Consensus 199 ~~~~~i~~~~~--~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~-l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD 275 (415)
T COG0446 199 TKVVGVEGKGN--TLVVERVVGIDGEEIKADLVIIGPGERPNVV-LANDALPGLALAGGAVLVDERGGTSKDPDVYAAGD 275 (415)
T ss_pred CceEEEEcccC--cceeeEEEEeCCcEEEeeEEEEeecccccHH-HHhhCccceeccCCCEEEccccccCCCCCEEeccc
Confidence 99999998763 1122 5778888999999999999999976 6655541 34567889999999997 999999999
Q ss_pred ccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCce--E
Q psy1545 313 VCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE--I 390 (454)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~ 390 (454)
|+..+............++.|..+++.++.++.+. . .++......+...++......|.+.. . ..... .
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~g~~~~-~-~~~~~~~~ 346 (415)
T COG0446 276 VAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA-L------RIPGLLGTVISDVGDLCAASTGLTEG-K-ERGIDVVL 346 (415)
T ss_pred eEeeecccCCceeeeechhhHhhhhHHHHHHhccc-c------ccccccCceEEEEcCeEEEEecCCcc-c-ccceeeeE
Confidence 99875443222334678999999999999999975 1 11112222334556667777777764 1 11000 0
Q ss_pred --EEe------ecCC--ccEEEEEE--ECCeEEEEEEEcCCchHHHHHHHHhcCCCcchh
Q psy1545 391 --LLR------VTRG--EEYIKLVM--KDGRMQGAVLIGETEIEEMCENLILNQLDLTDI 438 (454)
Q Consensus 391 --~~~------~~~~--~~~~k~~~--~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~ 438 (454)
... ..+. ....|... ++++++|++..+.......+...+..+.++.++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (415)
T COG0446 347 VVSGGKDPRAHLYPGAELVGIKLVGDADTGRILGGQELEVLKRIGALALAIGLGDTVAEL 406 (415)
T ss_pred EEeccCcccccccCCCCeEEEEEEEcCcccceehhhhHHHHhhhhhhhhhhhhcCchhhh
Confidence 000 0011 12556665 678899888821001344556667777777764
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=267.44 Aligned_cols=282 Identities=18% Similarity=0.228 Sum_probs=193.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
++|+|||||+||+++|..|++. |++|+|+|+++..++...+. ++......++.....+.+.+ ++++..+.....+
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~--G~~Vtv~e~~~~~GG~l~~g-ip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~d- 269 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRK--GHDVTIFDANEQAGGMMRYG-IPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRD- 269 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCceeeec-CCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCc-
Confidence 6899999999999999999998 89999999998776544331 11111122233334455555 8888766543222
Q ss_pred cccEEEeccCcEEEecEEEEecCCCC-CCCCCC-CceeeeeccchHHHHH---HHhhcCCeEEEEcCchhHHHHHHHhc-
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGASP-RKIWYS-PHVITIRDTDSVAVLQ---EKLKSAKKIVVIGNGGIATELVHELS- 155 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~p-~~~~~~-~~~~~~~~~~~~~~l~---~~~~~~~~vvVvG~G~~g~e~a~~l~- 155 (454)
+.+++. ...||+||||||+++ +.++++ .+...+.+..++.+.. .....+++++|||+|++|+|+|..+.
T Consensus 270 ----v~~~~~-~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~ 344 (652)
T PRK12814 270 ----ITLEEL-QKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALR 344 (652)
T ss_pred ----cCHHHH-HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHH
Confidence 222222 235999999999975 456666 2222222222222211 12335899999999999999999875
Q ss_pred -CC-cEEEEEeCCC-ccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceE
Q psy1545 156 -NV-DIVWVVKDKH-ISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKIT 232 (454)
Q Consensus 156 -g~-~V~~i~~~~~-~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~ 232 (454)
|. +|+++.|+++ .++ .. ...+.+. .+.||+
T Consensus 345 ~Ga~~Vtlv~r~~~~~mp----a~-~~ei~~a------------------------------------------~~eGV~ 377 (652)
T PRK12814 345 LGAESVTILYRRTREEMP----AN-RAEIEEA------------------------------------------LAEGVS 377 (652)
T ss_pred cCCCeEEEeeecCcccCC----CC-HHHHHHH------------------------------------------HHcCCc
Confidence 65 6999998764 222 11 1112111 126999
Q ss_pred EEeCceEEEEEcCCCCccce-EEEec---------------CC--cEEecCEEEEeeccCcCcccccCCCCceecCCCce
Q psy1545 233 IEYSCEVERIVDSEDDTCNA-YVKLT---------------NG--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGI 294 (454)
Q Consensus 233 i~~~~~v~~i~~~~~~~~~~-~v~~~---------------~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i 294 (454)
+++++.+.++...++ ...+ .+.+. +| .++++|.||+|+|..|+.. ++...++.++.+|+|
T Consensus 378 i~~~~~~~~i~~~~~-~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~-ll~~~gl~~~~~G~I 455 (652)
T PRK12814 378 LRELAAPVSIERSEG-GLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPP-IAEAAGIGTSRNGTV 455 (652)
T ss_pred EEeccCcEEEEecCC-eEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcc-cccccCccccCCCcE
Confidence 999998888875432 1111 11111 22 3699999999999999998 888888888888999
Q ss_pred Eecc-ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCc
Q psy1545 295 GVNE-LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEP 352 (454)
Q Consensus 295 ~vd~-~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~ 352 (454)
.||+ +++|+.|+|||+|||+..+ .++..|+.||+.||.+|...+.+++
T Consensus 456 ~vd~~~~~Ts~pgVfA~GDv~~g~----------~~v~~Ai~~G~~AA~~I~~~L~g~~ 504 (652)
T PRK12814 456 KVDPETLQTSVAGVFAGGDCVTGA----------DIAINAVEQGKRAAHAIDLFLNGKP 504 (652)
T ss_pred eeCCCCCcCCCCCEEEcCCcCCCc----------hHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9997 5889999999999998643 4677899999999999988777654
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=245.30 Aligned_cols=278 Identities=17% Similarity=0.174 Sum_probs=186.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
.+|+|||||++|+++|..|++. |++|+++|+.+.+++...+. .+......++.....+.+.+ +++++.+....
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~--G~~V~i~e~~~~~gG~l~~g-ip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~--- 215 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARA--GVQVVVFDRHPEIGGLLTFG-IPSFKLDKAVLSRRREIFTAMGIEFHLNCEVG--- 215 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCceeeec-CccccCCHHHHHHHHHHHHHCCCEEECCCEeC---
Confidence 6899999999999999999998 89999999998776544431 11111122233334455555 89887553221
Q ss_pred cccEEEeccCcEEEecEEEEecCCCCC-CCCCC-CceeeeeccchHHHHHH--------------HhhcCCeEEEEcCch
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGASPR-KIWYS-PHVITIRDTDSVAVLQE--------------KLKSAKKIVVIGNGG 145 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~p~-~~~~~-~~~~~~~~~~~~~~l~~--------------~~~~~~~vvVvG~G~ 145 (454)
+.+.+++ ....||.||+|||+.+. .++++ .+...+.+..++..... ....+++++|+|+|.
T Consensus 216 --~~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~ 292 (467)
T TIGR01318 216 --RDISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGD 292 (467)
T ss_pred --CccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcH
Confidence 1122222 23579999999999864 45665 22122222222111000 001368999999999
Q ss_pred hHHHHHHHhc--CC-cEEEEEeCCCc-cccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccc
Q psy1545 146 IATELVHELS--NV-DIVWVVKDKHI-SATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVN 221 (454)
Q Consensus 146 ~g~e~a~~l~--g~-~V~~i~~~~~~-~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (454)
+|+++|..+. |+ +||+++|++.. ++. ... ....+
T Consensus 293 ~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~-----~~~-e~~~~------------------------------------ 330 (467)
T TIGR01318 293 TAMDCVRTAIRLGAASVTCAYRRDEANMPG-----SRR-EVANA------------------------------------ 330 (467)
T ss_pred HHHHHHHHHHHcCCCeEEEEEecCcccCCC-----CHH-HHHHH------------------------------------
Confidence 9999998764 75 79999987653 221 111 11222
Q ss_pred cccCccCCceEEEeCceEEEEEcCCCCccceEEEec---------C---------C--cEEecCEEEEeeccCcCccccc
Q psy1545 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---------N---------G--HTHACDIVVSAIGVVPNSNIQV 281 (454)
Q Consensus 222 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---------~---------g--~~~~~D~vi~a~G~~p~~~~~~ 281 (454)
++.||++++++.+.++..+++ +....+++. + | .++++|.||+|+|++|+...++
T Consensus 331 -----~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~ 404 (467)
T TIGR01318 331 -----REEGVEFLFNVQPVYIECDED-GRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWL 404 (467)
T ss_pred -----HhcCCEEEecCCcEEEEECCC-CeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccc
Confidence 338999999999999975432 223223321 1 2 4699999999999999853267
Q ss_pred CCCCceecCCCceEec----cccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 282 HGTPFELAPDCGIGVN----ELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 282 ~~~~l~~~~~g~i~vd----~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
...+++++++|++.|| ++++|+.|+|||+|||+..+ .++..|+.+|+.||.+|...
T Consensus 405 ~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~----------~~~~~Ai~~G~~aA~~i~~~ 464 (467)
T TIGR01318 405 AGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGA----------DLVVTAVAEGRQAAQGILDW 464 (467)
T ss_pred cccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCc----------cHHHHHHHHHHHHHHHHHHH
Confidence 7777888888999999 67899999999999998743 35678999999999998753
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=254.49 Aligned_cols=279 Identities=18% Similarity=0.199 Sum_probs=186.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
.+|+||||||||++||..|++. |++|+|+|+.+..++...+. .+......++.....+.+.+ +++++.+.....+
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~--G~~V~V~E~~~~~GG~l~~g-ip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~- 403 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARN--GVAVTVYDRHPEIGGLLTFG-IPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD- 403 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCCceeeec-CCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc-
Confidence 6899999999999999999998 89999999998876654432 11111112233333445555 8888755322111
Q ss_pred cccEEEeccCcEEEecEEEEecCCC-CCCCCCC----Cceeeeec-----cchHHHHHHH------hhcCCeEEEEcCch
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGAS-PRKIWYS----PHVITIRD-----TDSVAVLQEK------LKSAKKIVVIGNGG 145 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~-p~~~~~~----~~~~~~~~-----~~~~~~l~~~------~~~~~~vvVvG~G~ 145 (454)
+.+++ ....||+|++|||+. ++.++++ .+++.... ..+...+... ...+++++|||+|.
T Consensus 404 ----i~~~~-~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~ 478 (654)
T PRK12769 404 ----ISLES-LLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGD 478 (654)
T ss_pred ----CCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcH
Confidence 22211 124699999999986 3445555 33332110 0000000000 01368999999999
Q ss_pred hHHHHHHHhc--CC-cEEEEEeCCCc-cccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccc
Q psy1545 146 IATELVHELS--NV-DIVWVVKDKHI-SATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVN 221 (454)
Q Consensus 146 ~g~e~a~~l~--g~-~V~~i~~~~~~-~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (454)
+|+|+|..+. |+ +|+++.+++.. ++. .....+.+
T Consensus 479 ~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~------~~~e~~~~------------------------------------ 516 (654)
T PRK12769 479 TAMDCVRTALRHGASNVTCAYRRDEANMPG------SKKEVKNA------------------------------------ 516 (654)
T ss_pred HHHHHHHHHHHcCCCeEEEeEecCCCCCCC------CHHHHHHH------------------------------------
Confidence 9999997654 65 79999987643 221 11112222
Q ss_pred cccCccCCceEEEeCceEEEEEcCCCCccceEEEe---------cCC-----------cEEecCEEEEeeccCcCccccc
Q psy1545 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL---------TNG-----------HTHACDIVVSAIGVVPNSNIQV 281 (454)
Q Consensus 222 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~---------~~g-----------~~~~~D~vi~a~G~~p~~~~~~ 281 (454)
++.||++++++.+.++..+++ +....|++ .+| .++++|.||+|+|+.|+...++
T Consensus 517 -----~~~Gv~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~ 590 (654)
T PRK12769 517 -----REEGANFEFNVQPVALELNEQ-GHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWL 590 (654)
T ss_pred -----HHcCCeEEeccCcEEEEECCC-CeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccc
Confidence 338999999999999875332 22323332 112 2699999999999999853277
Q ss_pred CCCCceecCCCceEecc----ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 282 HGTPFELAPDCGIGVNE----LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 282 ~~~~l~~~~~g~i~vd~----~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
+..+++++.+|.|.||+ +++|+.|+|||+|||+.++ .++..|+.+|+.||.+|...+
T Consensus 591 ~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~----------~~vv~Ai~~Gr~AA~~I~~~L 651 (654)
T PRK12769 591 ESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGA----------DLVVTAMAEGRHAAQGIIDWL 651 (654)
T ss_pred cccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCC----------cHHHHHHHHHHHHHHHHHHHh
Confidence 77788888899999986 4899999999999998643 466789999999999997654
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=245.71 Aligned_cols=292 Identities=16% Similarity=0.206 Sum_probs=184.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
++|+|||||++|+++|..|++. +.+|+|+|+.+..++...+. .+......+......+++.+ +++++.+.....+
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~--g~~V~v~e~~~~~gG~l~~g-ip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~- 219 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRA--GHTVTVFEREDRCGGLLMYG-IPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD- 219 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCeEEEEecCCCCCceeecc-CCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc-
Confidence 5899999999999999999998 89999999998765433321 11111112233344455666 9998866443222
Q ss_pred cccEEEeccCcEEEecEEEEecCCC-CCCCCCC----Cceeeeec-cchHHHH---------HHHhhcCCeEEEEcCchh
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGAS-PRKIWYS----PHVITIRD-TDSVAVL---------QEKLKSAKKIVVIGNGGI 146 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~-p~~~~~~----~~~~~~~~-~~~~~~l---------~~~~~~~~~vvVvG~G~~ 146 (454)
+.. ++....||+|++|||++ |+.++++ ++++.... ..+.... ......+++++|||+|++
T Consensus 220 ----~~~-~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~ 294 (485)
T TIGR01317 220 ----ISA-DELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDT 294 (485)
T ss_pred ----cCH-HHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHH
Confidence 111 12235799999999998 8888887 23433211 1111100 011124799999999999
Q ss_pred HHHHHHHhc---CCcEEEEEeCCCccccccC----Ccchhhh-HHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccc
Q psy1545 147 ATELVHELS---NVDIVWVVKDKHISATFLD----PGAAEFF-QDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHT 218 (454)
Q Consensus 147 g~e~a~~l~---g~~V~~i~~~~~~~~~~~d----~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (454)
|+|+|..+. +.+|+++++.+..+..... +.....+ .....
T Consensus 295 g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~-------------------------------- 342 (485)
T TIGR01317 295 GADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAH-------------------------------- 342 (485)
T ss_pred HHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHH--------------------------------
Confidence 999976553 4589999987765432111 1000000 00000
Q ss_pred ccccccCccCCceEE-EeCceEEEEEcCCCCccceEEEe--------cCC-----------cEEecCEEEEeeccC-cCc
Q psy1545 219 QVNLHGSSRDTKITI-EYSCEVERIVDSEDDTCNAYVKL--------TNG-----------HTHACDIVVSAIGVV-PNS 277 (454)
Q Consensus 219 ~~~~~~~l~~~gv~i-~~~~~v~~i~~~~~~~~~~~v~~--------~~g-----------~~~~~D~vi~a~G~~-p~~ 277 (454)
.+..+..|+.+ ++++.+.++..+++ +....+++ ++| .++++|.||+|+|.. |+.
T Consensus 343 ----~e~~~~~gv~~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~ 417 (485)
T TIGR01317 343 ----EEAAAHYGRDPREYSILTKEFIGDDE-GKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQ 417 (485)
T ss_pred ----HhhhhhcCccceEEecCcEEEEEcCC-CeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCcc
Confidence 01111235443 34556666654321 11222221 122 379999999999996 888
Q ss_pred ccccCCCCceecCCCceEe-ccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC
Q psy1545 278 NIQVHGTPFELAPDCGIGV-NELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351 (454)
Q Consensus 278 ~~~~~~~~l~~~~~g~i~v-d~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 351 (454)
. ++...+++++.+|.+.+ |++++|+.|+|||+|||+..+ .+...|+.+|+.||.+|...+.++
T Consensus 418 ~-~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~----------~~~~~Av~~G~~AA~~i~~~L~g~ 481 (485)
T TIGR01317 418 I-LLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQ----------SLIVWAINEGRKAAAAVDRYLMGS 481 (485)
T ss_pred c-cccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCc----------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7 88888888887888855 578999999999999998643 356679999999999998766553
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=247.06 Aligned_cols=277 Identities=20% Similarity=0.218 Sum_probs=180.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
.+|+|||+|+||+++|..|++. |++|+|+|+++..++...+. .+......+......+.+.+ +++++.+.....+
T Consensus 284 ~~v~IIGaG~aGl~aA~~L~~~--G~~v~vie~~~~~gG~~~~~-i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~- 359 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATM--GYEVTVYESLSKPGGVMRYG-IPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD- 359 (604)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCCceEeec-CCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc-
Confidence 5799999999999999999998 89999999998776543321 11111112233334455566 8888766333221
Q ss_pred cccEEEeccCcEEEecEEEEecCCC-CCCCCCC-Cceeeeecc-chHHHHHHHh-------hcCCeEEEEcCchhHHHHH
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGAS-PRKIWYS-PHVITIRDT-DSVAVLQEKL-------KSAKKIVVIGNGGIATELV 151 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~-p~~~~~~-~~~~~~~~~-~~~~~l~~~~-------~~~~~vvVvG~G~~g~e~a 151 (454)
+..++ ....||+||+|||+. |+.++++ .....+.+. +.+..+...+ ..+++++|||||++|+|+|
T Consensus 360 ----~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A 434 (604)
T PRK13984 360 ----IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIA 434 (604)
T ss_pred ----CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHH
Confidence 11111 235799999999997 5777776 222222222 2223332221 1268999999999999999
Q ss_pred HHhc--C------CcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccc
Q psy1545 152 HELS--N------VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLH 223 (454)
Q Consensus 152 ~~l~--g------~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (454)
..+. + .+|+++...... . .++....+ +.+.
T Consensus 435 ~~l~r~~~~~~g~~~V~v~~~~r~~-~-~~~~~~~e-~~~~--------------------------------------- 472 (604)
T PRK13984 435 RSMARLQKMEYGEVNVKVTSLERTF-E-EMPADMEE-IEEG--------------------------------------- 472 (604)
T ss_pred HHHHhccccccCceEEEEeccccCc-c-cCCCCHHH-HHHH---------------------------------------
Confidence 9885 3 367876432111 1 12222111 1111
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEec-------------------CCcEEecCEEEEeeccCcCcccccCC-
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT-------------------NGHTHACDIVVSAIGVVPNSNIQVHG- 283 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~-------------------~g~~~~~D~vi~a~G~~p~~~~~~~~- 283 (454)
.+.||++++++.+.++..++ +....+++. +..++++|.|++|+|++|+.+ ++..
T Consensus 473 ---~~~GV~i~~~~~~~~i~~~~--g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~-~l~~~ 546 (604)
T PRK13984 473 ---LEEGVVIYPGWGPMEVVIEN--DKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYS-YLPEE 546 (604)
T ss_pred ---HHcCCEEEeCCCCEEEEccC--CEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChh-hhhhh
Confidence 12799999998888876533 222223221 124799999999999999987 6543
Q ss_pred --CCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 284 --TPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 284 --~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
.++.+ ++|+|.||+++||++|+|||+|||+..+ ....|+.+|+.||.+|...+
T Consensus 547 ~~~~l~~-~~G~i~vd~~~~Ts~~gVfAaGD~~~~~-----------~~v~Ai~~G~~AA~~I~~~L 601 (604)
T PRK13984 547 LKSKLEF-VRGRILTNEYGQTSIPWLFAGGDIVHGP-----------DIIHGVADGYWAAEGIDMYL 601 (604)
T ss_pred hccCccc-cCCeEEeCCCCccCCCCEEEecCcCCch-----------HHHHHHHHHHHHHHHHHHHh
Confidence 23544 4688999999999999999999998753 23469999999999997654
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-27 Score=231.50 Aligned_cols=327 Identities=14% Similarity=0.138 Sum_probs=190.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEe
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAID 80 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~ 80 (454)
..+|+||||||||++||..|++..++++|+|+|+.+.+++...+...+.......+.......+.. +++++.+...
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~v--- 102 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTL--- 102 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEE---
Confidence 368999999999999999999744599999999999887765542211111111222222233344 7887654221
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCC-CCCCCC-CceeeeeccchHHHHH----------HHhhcCCeEEEEcCchhHH
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASP-RKIWYS-PHVITIRDTDSVAVLQ----------EKLKSAKKIVVIGNGGIAT 148 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p-~~~~~~-~~~~~~~~~~~~~~l~----------~~~~~~~~vvVvG~G~~g~ 148 (454)
.+.+++++- ...||+||||||+.+ +.+++| .+...+.+..++.... ..+..+++++|||+|++|+
T Consensus 103 --g~dvtl~~L-~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAl 179 (491)
T PLN02852 103 --GRDVSLSEL-RDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVAL 179 (491)
T ss_pred --CccccHHHH-hhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHH
Confidence 122444333 347999999999985 667777 2222333333332211 1123479999999999999
Q ss_pred HHHHHhc----------------------C-CcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccC
Q psy1545 149 ELVHELS----------------------N-VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTG 205 (454)
Q Consensus 149 e~a~~l~----------------------g-~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 205 (454)
|+|..|. + .+|+++.|+......+-..++.++. +...-+.......+.....
T Consensus 180 D~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~-----~l~~~~~~~~~~~~~~~~~ 254 (491)
T PLN02852 180 DCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELL-----GLKNVRVRIKEADLTLSPE 254 (491)
T ss_pred HHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHh-----ccCCCceeechhhhccccc
Confidence 9998763 2 3699999887544332222222211 0000000000000000000
Q ss_pred CCCCCCCCCcccccccccc-C---------ccCCceEEEeCceEEEEEcCCC-CccceEEEec-----------------
Q psy1545 206 GEKGPSLGPDWHTQVNLHG-S---------SRDTKITIEYSCEVERIVDSED-DTCNAYVKLT----------------- 257 (454)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~-~---------l~~~gv~i~~~~~v~~i~~~~~-~~~~~~v~~~----------------- 257 (454)
..-.......-...+.+.. . -...+|.+++.....+|..+++ .+.+..+++.
T Consensus 255 ~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~ 334 (491)
T PLN02852 255 DEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVG 334 (491)
T ss_pred hhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCC
Confidence 0000000000000000000 0 0126899999998888874211 0223334332
Q ss_pred CC--cEEecCEEEEeeccC--cCcc-cccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHH
Q psy1545 258 NG--HTHACDIVVSAIGVV--PNSN-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQ 332 (454)
Q Consensus 258 ~g--~~~~~D~vi~a~G~~--p~~~-~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~ 332 (454)
+| ++++||.||.++|++ |... ++-...++..+.+|+|.+|+.++|+.|+|||+|||..++ ..+...
T Consensus 335 tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp---------~gvI~t 405 (491)
T PLN02852 335 TGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGP---------TGIIGT 405 (491)
T ss_pred CCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCC---------CCeeee
Confidence 23 368999999999998 4443 122334566788899999988899999999999999765 235556
Q ss_pred HHHHHHHHHhhhcCCC
Q psy1545 333 AKHMGTYAAKCMVGAV 348 (454)
Q Consensus 333 A~~~g~~aa~~i~~~~ 348 (454)
++.+|+.++.+|...+
T Consensus 406 ~~~dA~~ta~~i~~d~ 421 (491)
T PLN02852 406 NLTCAEETVASIAEDL 421 (491)
T ss_pred cHhhHHHHHHHHHHHH
Confidence 8899999999998754
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-27 Score=242.46 Aligned_cols=282 Identities=20% Similarity=0.229 Sum_probs=186.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEe
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAID 80 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~ 80 (454)
..+|+|||||++|+++|..|++. |++|+++|+.+.+++...+.-....+ +........+.+.. +++++.+....
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~--G~~Vtv~e~~~~~GG~l~~gip~~~l-~~~~~~~~~~~~~~~Gv~~~~~~~v~-- 384 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA--GVQVDVFDRHPEIGGMLTFGIPPFKL-DKTVLSQRREIFTAMGIDFHLNCEIG-- 384 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc--CCcEEEEeCCCCCCCeeeccCCcccC-CHHHHHHHHHHHHHCCeEEEcCCccC--
Confidence 36899999999999999999998 88999999999877655442111111 12222333445555 88887553221
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCC-CCCCCC----Cceeeeec-----cchHHHHHH------HhhcCCeEEEEcCc
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASP-RKIWYS----PHVITIRD-----TDSVAVLQE------KLKSAKKIVVIGNG 144 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p-~~~~~~----~~~~~~~~-----~~~~~~l~~------~~~~~~~vvVvG~G 144 (454)
+.+.+.+ ....||.+++|||+.+ +.++++ ++++.... ..+...+.+ ....+++++|+|+|
T Consensus 385 ---~~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG 460 (639)
T PRK12809 385 ---RDITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGG 460 (639)
T ss_pred ---CcCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCc
Confidence 1122222 2356999999999974 445555 23332100 001110100 01137899999999
Q ss_pred hhHHHHHHHhc--CC-cEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccc
Q psy1545 145 GIATELVHELS--NV-DIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVN 221 (454)
Q Consensus 145 ~~g~e~a~~l~--g~-~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (454)
.+++++|..+. |+ +||++.|+++... ... ...+. ..
T Consensus 461 ~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~---~~~-~~e~~-~a------------------------------------ 499 (639)
T PRK12809 461 DTTMDCLRTSIRLNAASVTCAYRRDEVSM---PGS-RKEVV-NA------------------------------------ 499 (639)
T ss_pred HHHHHHHHHHHHcCCCeEEEeeecCcccC---CCC-HHHHH-HH------------------------------------
Confidence 99999997653 64 8999998764421 111 11111 11
Q ss_pred cccCccCCceEEEeCceEEEEEcCCCCccceEEEe---c------C---------C--cEEecCEEEEeeccCcCccccc
Q psy1545 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL---T------N---------G--HTHACDIVVSAIGVVPNSNIQV 281 (454)
Q Consensus 222 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~---~------~---------g--~~~~~D~vi~a~G~~p~~~~~~ 281 (454)
++.||++++++.++++..+++ +....+++ . + | .++++|.||+|+|+.|+...++
T Consensus 500 -----~~eGv~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~ 573 (639)
T PRK12809 500 -----REEGVEFQFNVQPQYIACDED-GRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWL 573 (639)
T ss_pred -----HHcCCeEEeccCCEEEEECCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccc
Confidence 237999999999999975432 22222221 1 1 2 3689999999999999753267
Q ss_pred CCCCceecCCCceEecc----ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 282 HGTPFELAPDCGIGVNE----LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 282 ~~~~l~~~~~g~i~vd~----~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
+..+++++++|.|.+|+ ++||+.|+|||+|||+.++ .++..|+.+|+.||.+|...+.
T Consensus 574 ~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~----------~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 574 QGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGA----------DLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred cccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCc----------hHHHHHHHHHHHHHHHHHHHHh
Confidence 77788888889999986 4889999999999998643 4667899999999999986543
|
|
| >KOG0404|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=195.00 Aligned_cols=260 Identities=19% Similarity=0.184 Sum_probs=193.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc---c-c-------cccccccccccccccchhhhHHHHHhc-CcE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI---V-K-------AVTKTVPVTKLLSDITVEETDANKFEG-LCT 70 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~---~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~ 70 (454)
.+|+|||+|||+.+||+++++. ..+-+|+|-.-. . + ...++|.|+..+...++.+...++-.+ +.+
T Consensus 9 e~v~IiGSGPAa~tAAiYaara--elkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~ 86 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARA--ELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTE 86 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhc--ccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcce
Confidence 4799999999999999999998 778888886311 1 1 134667777777777777777666666 999
Q ss_pred EEcceEEEEeCcccEEEe-ccCcEEEecEEEEecCCCCCCCCCC-C-ce-e-----eeeccch-HHHHHHHhhcCCeEEE
Q psy1545 71 VIVDTVAAIDPRVNCVIT-EKQNRIKYKTLCICTGASPRKIWYS-P-HV-I-----TIRDTDS-VAVLQEKLKSAKKIVV 140 (454)
Q Consensus 71 ~~~~~v~~i~~~~~~v~~-~~g~~i~~d~lviAtG~~p~~~~~~-~-~~-~-----~~~~~~~-~~~l~~~~~~~~~vvV 140 (454)
++...|..++...+...+ .+.+.+.+|.+|+|||+..+...+| . .. + +.+...| +..+ .+.|.++|
T Consensus 87 i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapi----frnk~laV 162 (322)
T KOG0404|consen 87 IITETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPI----FRNKPLAV 162 (322)
T ss_pred eeeeehhhccccCCCeEEEecCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchh----hcCCeeEE
Confidence 999999999987763332 2566899999999999987776665 1 11 1 1111112 2222 24799999
Q ss_pred EcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccc
Q psy1545 141 IGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHT 218 (454)
Q Consensus 141 vG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (454)
||||.+++|-|..|. +.+|++++|++.+.. +..++++..
T Consensus 163 IGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA-------s~~Mq~ra~-------------------------------- 203 (322)
T KOG0404|consen 163 IGGGDSAMEEALFLTKYASKVYIIHRRDHFRA-------SKIMQQRAE-------------------------------- 203 (322)
T ss_pred EcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH-------HHHHHHHHh--------------------------------
Confidence 999999999999997 899999999987754 233333332
Q ss_pred ccccccCccCCceEEEeCceEEEEEcCCCCccceEEEe-cCC--cEEecCEEEEeeccCcCcccccCCCCceecCCCceE
Q psy1545 219 QVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL-TNG--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIG 295 (454)
Q Consensus 219 ~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~-~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~ 295 (454)
++.+|++++|+.+.+...++..-..+.++- ..| +.++++-+++++|..|++. +++. .+++|++|+|+
T Consensus 204 --------~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~-~l~g-qve~d~~GYi~ 273 (322)
T KOG0404|consen 204 --------KNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATK-FLKG-QVELDEDGYIV 273 (322)
T ss_pred --------cCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhh-HhcC-ceeeccCceEE
Confidence 447999999999888877642111223322 223 6799999999999999999 8887 59999999999
Q ss_pred ecc-ccccccCceeecCcccccC
Q psy1545 296 VNE-LMQTSISNVYAAGDVCTPS 317 (454)
Q Consensus 296 vd~-~~~t~~~~Iya~GD~~~~~ 317 (454)
+-+ .-.||+|++||+||+....
T Consensus 274 t~pgts~TsvpG~FAAGDVqD~k 296 (322)
T KOG0404|consen 274 TRPGTSLTSVPGVFAAGDVQDKK 296 (322)
T ss_pred eccCcccccccceeeccccchHH
Confidence 984 5669999999999998743
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-26 Score=244.60 Aligned_cols=275 Identities=16% Similarity=0.119 Sum_probs=186.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccc-ccccccccchhhhHHHHHhc--CcEEEc-ceEE
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVP-VTKLLSDITVEETDANKFEG--LCTVIV-DTVA 77 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~i~~~~-~~v~ 77 (454)
.+||+||||||||++||..+++. |.+|+|+|+++..++...+.. ........++.....+.+.. +++++. .+|.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~--G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~ 240 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARA--GARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAF 240 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEE
Confidence 36899999999999999999997 999999999887765443322 11112223343444555554 588875 4777
Q ss_pred EEeCcccEEEec----------c----C--cEEEecEEEEecCCCCCCCCCC-CceeeeeccchHHHHHHH--hhcCCeE
Q psy1545 78 AIDPRVNCVITE----------K----Q--NRIKYKTLCICTGASPRKIWYS-PHVITIRDTDSVAVLQEK--LKSAKKI 138 (454)
Q Consensus 78 ~i~~~~~~v~~~----------~----g--~~i~~d~lviAtG~~p~~~~~~-~~~~~~~~~~~~~~l~~~--~~~~~~v 138 (454)
.+.......... + + ..+.||+||||||++|+.|+++ .....+.+...+..+.+. ...++++
T Consensus 241 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~V 320 (985)
T TIGR01372 241 GYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRI 320 (985)
T ss_pred EEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeE
Confidence 775532211110 0 1 1689999999999999998887 122222233333322211 2247999
Q ss_pred EEEcCchhHHHHHHHhc--CC-cEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCc
Q psy1545 139 VVIGNGGIATELVHELS--NV-DIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPD 215 (454)
Q Consensus 139 vVvG~G~~g~e~a~~l~--g~-~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 215 (454)
+|+|+|++++|+|..|. |. .|+++++.+.+. ..+.+.+
T Consensus 321 vViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~---------~~l~~~L------------------------------ 361 (985)
T TIGR01372 321 VVATNNDSAYRAAADLLAAGIAVVAIIDARADVS---------PEARAEA------------------------------ 361 (985)
T ss_pred EEECCCHHHHHHHHHHHHcCCceEEEEccCcchh---------HHHHHHH------------------------------
Confidence 99999999999999986 74 578887654332 2233344
Q ss_pred cccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec----CCcEEecCEEEEeeccCcCcccccCCCCcee--c
Q psy1545 216 WHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT----NGHTHACDIVVSAIGVVPNSNIQVHGTPFEL--A 289 (454)
Q Consensus 216 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~----~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~--~ 289 (454)
++.||++++++.+.++..++. ...|++. ++++++||.|+++.|++|+++ ++...+..+ +
T Consensus 362 -----------~~~GV~i~~~~~v~~i~g~~~---v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~-L~~~lg~~~~~~ 426 (985)
T TIGR01372 362 -----------RELGIEVLTGHVVAATEGGKR---VSGVAVARNGGAGQRLEADALAVSGGWTPVVH-LFSQRGGKLAWD 426 (985)
T ss_pred -----------HHcCCEEEcCCeEEEEecCCc---EEEEEEEecCCceEEEECCEEEEcCCcCchhH-HHHhcCCCeeec
Confidence 338999999999999987542 2334443 447899999999999999998 777665443 2
Q ss_pred CC--CceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 290 PD--CGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 290 ~~--g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
+. +++. .|+.|+||++|||++. .....|..+|+.||..++..+
T Consensus 427 ~~~~~~~~-----~t~v~gVyaaGD~~g~-----------~~~~~A~~eG~~Aa~~i~~~l 471 (985)
T TIGR01372 427 AAIAAFLP-----GDAVQGCILAGAANGL-----------FGLAAALADGAAAGAAAARAA 471 (985)
T ss_pred cccCceec-----CCCCCCeEEeeccCCc-----------cCHHHHHHHHHHHHHHHHHHc
Confidence 11 1111 2789999999999864 345679999999999886443
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-27 Score=213.08 Aligned_cols=274 Identities=22% Similarity=0.258 Sum_probs=190.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-----cccchhhhHHHHHhc-CcEEEcc-e
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-----SDITVEETDANKFEG-LCTVIVD-T 75 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~i~~~~~-~ 75 (454)
|||+||||||||.+||.+.+|. |.+.=++ .+.+.+...........+ ....+.....+..++ .+++++. +
T Consensus 212 yDVLvVGgGPAgaaAAiYaARK--GiRTGl~-aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qr 288 (520)
T COG3634 212 YDVLVVGGGPAGAAAAIYAARK--GIRTGLV-AERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQR 288 (520)
T ss_pred ceEEEEcCCcchhHHHHHHHhh--cchhhhh-hhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhh
Confidence 8999999999999999999998 7665444 222332222111111111 111222333334444 7777754 7
Q ss_pred EEEEeCc-----ccEEEeccCcEEEecEEEEecCCCCCCCCCC-------CceeeeeccchHHHHHHHhhcCCeEEEEcC
Q psy1545 76 VAAIDPR-----VNCVITEKQNRIKYKTLCICTGASPRKIWYS-------PHVITIRDTDSVAVLQEKLKSAKKIVVIGN 143 (454)
Q Consensus 76 v~~i~~~-----~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~ 143 (454)
++.+.+. -..|++++|..+.++.+|||||++=+...+| .++- ++...|- .+.++|++.||||
T Consensus 289 a~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVa-yCPHCDG-----PLF~gK~VAVIGG 362 (520)
T COG3634 289 ASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVA-YCPHCDG-----PLFKGKRVAVIGG 362 (520)
T ss_pred hhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCee-eCCCCCC-----cccCCceEEEECC
Confidence 7777663 2378899999999999999999987766666 2222 2222222 2235999999999
Q ss_pred chhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccc
Q psy1545 144 GGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVN 221 (454)
Q Consensus 144 G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (454)
|++|+|.|..|+ -..||+++-.+.+.. ...+++++..
T Consensus 363 GNSGvEAAIDLAGiv~hVtllEF~~eLkA-------D~VLq~kl~s---------------------------------- 401 (520)
T COG3634 363 GNSGVEAAIDLAGIVEHVTLLEFAPELKA-------DAVLQDKLRS---------------------------------- 401 (520)
T ss_pred CcchHHHHHhHHhhhheeeeeecchhhhh-------HHHHHHHHhc----------------------------------
Confidence 999999999998 468999975443322 3455555543
Q ss_pred cccCccCCceEEEeCceEEEEEcCCCCccceEEEec---CC--cEEecCEEEEeeccCcCcccccCCCCceecCCCceEe
Q psy1545 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---NG--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGV 296 (454)
Q Consensus 222 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~v 296 (454)
-.++++++|..-+++.++++ .+..+.+. +| ..++-+-|++-+|..||++ |++.. +++++.|.|.|
T Consensus 402 ------l~Nv~ii~na~Ttei~Gdg~--kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~-WLkg~-vel~~rGEIiv 471 (520)
T COG3634 402 ------LPNVTIITNAQTTEVKGDGD--KVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTE-WLKGA-VELNRRGEIIV 471 (520)
T ss_pred ------CCCcEEEecceeeEEecCCc--eecceEEEeccCCceeEEEeeeeEEEEecccChh-Hhhch-hhcCcCccEEE
Confidence 16899999999999998863 23444443 34 4566777999999999999 99987 89999999999
Q ss_pred ccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhc
Q psy1545 297 NELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMV 345 (454)
Q Consensus 297 d~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 345 (454)
|....||+|+|||+|||+..++. ..-.|+.+|..|+-+..
T Consensus 472 D~~g~TsvpGvFAAGD~T~~~yK---------QIIIamG~GA~AaL~AF 511 (520)
T COG3634 472 DARGETNVPGVFAAGDCTTVPYK---------QIIIAMGEGAKASLSAF 511 (520)
T ss_pred ecCCCcCCCceeecCcccCCccc---------eEEEEecCcchhhhhhh
Confidence 99999999999999999987643 22334555555554433
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-25 Score=225.70 Aligned_cols=282 Identities=19% Similarity=0.223 Sum_probs=182.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
.+|+|||+||+|+++|..|++. |.+|+++|+.+..++...+. .+....+.++.....+.+.+ ++++..+.....+.
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~--G~~V~v~e~~~~~GG~l~~g-ip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~ 214 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRM--GHAVTIFEAGPKLGGMMRYG-IPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI 214 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCCCeeeec-CCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence 5799999999999999999998 88999999998876544331 11111112223333444455 88876543221111
Q ss_pred cccEEEeccCcEEEecEEEEecCCCC-CCCCCC-CceeeeeccchHHHH-HH--HhhcCCeEEEEcCchhHHHHHHHhc-
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGASP-RKIWYS-PHVITIRDTDSVAVL-QE--KLKSAKKIVVIGNGGIATELVHELS- 155 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~p-~~~~~~-~~~~~~~~~~~~~~l-~~--~~~~~~~vvVvG~G~~g~e~a~~l~- 155 (454)
.. +.....||.+++|||+.+ ..+.++ ..........++..- .. ....+++++|+|+|.++++++..+.
T Consensus 215 ~~------~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~ 288 (564)
T PRK12771 215 TL------EQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARR 288 (564)
T ss_pred CH------HHHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHH
Confidence 10 001125899999999874 334444 111111121122111 00 1123789999999999999998654
Q ss_pred -C-CcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEE
Q psy1545 156 -N-VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITI 233 (454)
Q Consensus 156 -g-~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i 233 (454)
+ .+|+++.|.+... +. .....+ ... .+.||++
T Consensus 289 lga~~v~ii~r~~~~~---~~-~~~~~~-~~a-----------------------------------------~~~GVki 322 (564)
T PRK12771 289 LGAEEVTIVYRRTRED---MP-AHDEEI-EEA-----------------------------------------LREGVEI 322 (564)
T ss_pred cCCCEEEEEEecCccc---CC-CCHHHH-HHH-----------------------------------------HHcCCEE
Confidence 5 6799998865321 11 111111 111 2379999
Q ss_pred EeCceEEEEEcCCCCccc---eEEEe----cC-------C--cEEecCEEEEeeccCcCcccccCC-CCceecCCCceEe
Q psy1545 234 EYSCEVERIVDSEDDTCN---AYVKL----TN-------G--HTHACDIVVSAIGVVPNSNIQVHG-TPFELAPDCGIGV 296 (454)
Q Consensus 234 ~~~~~v~~i~~~~~~~~~---~~v~~----~~-------g--~~~~~D~vi~a~G~~p~~~~~~~~-~~l~~~~~g~i~v 296 (454)
++++.+.++..++++... ..+.. ++ | .++++|.||+|+|..|+.. ++.. .++. +++|+|.|
T Consensus 323 ~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~-~~~~~~gl~-~~~G~i~v 400 (564)
T PRK12771 323 NWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSA-GLESVPGVE-VGRGVVQV 400 (564)
T ss_pred EecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchh-hhhhccCcc-cCCCCEEe
Confidence 999999999765421111 11221 11 2 4799999999999999987 7764 5676 77899999
Q ss_pred cc-ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC
Q psy1545 297 NE-LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351 (454)
Q Consensus 297 d~-~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 351 (454)
|+ +++|+.|+|||+|||+..+ .++..|+.+|+.||.+|...+.++
T Consensus 401 d~~~~~ts~~~Vfa~GD~~~g~----------~~v~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 401 DPNFMMTGRPGVFAGGDMVPGP----------RTVTTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred CCCCccCCCCCEEeccCcCCCc----------hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 98 7889999999999998643 467789999999999998766554
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-24 Score=210.94 Aligned_cols=270 Identities=12% Similarity=0.167 Sum_probs=176.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccc---------------------------c---c
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVT---------------------------K---L 51 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~---------------------------~---~ 51 (454)
.++|+|||||++||+||++|++. |.+++++|+++..++.|++..-. . .
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~--G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~ 87 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRRE--GHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMG 87 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhc--CCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhcc
Confidence 47899999999999999999998 89999999998887777542100 0 0
Q ss_pred ccc----------------cchhhhHHHHH---hc--CcE--E-EcceEEEEeCccc--EEEeccC--c--EEEecEEEE
Q psy1545 52 LSD----------------ITVEETDANKF---EG--LCT--V-IVDTVAAIDPRVN--CVITEKQ--N--RIKYKTLCI 101 (454)
Q Consensus 52 ~~~----------------~~~~~~~~~~~---~~--~i~--~-~~~~v~~i~~~~~--~v~~~~g--~--~i~~d~lvi 101 (454)
+++ +.-..+..+++ .+ ++. + +..+|+.+++... .|++.++ . +..||+||+
T Consensus 88 f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIv 167 (461)
T PLN02172 88 YRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVV 167 (461)
T ss_pred CCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEE
Confidence 000 10112223333 32 555 3 3568998886543 4554332 2 467999999
Q ss_pred ecC--CCCCCCCCC------CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc
Q psy1545 102 CTG--ASPRKIWYS------PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT 171 (454)
Q Consensus 102 AtG--~~p~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~ 171 (454)
||| +.|+.|+++ +...+.+...+...+ ++|+|+|||+|.+|+|+|..|. +.+|+++.|+..+..
T Consensus 168 AtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~-----~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~- 241 (461)
T PLN02172 168 CNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPF-----KNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDT- 241 (461)
T ss_pred eccCCCCCcCCCCCCcccCCceEEEecccCCcccc-----CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccc-
Confidence 999 678888877 223344444444333 4899999999999999999997 889999998653211
Q ss_pred ccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccc
Q psy1545 172 FLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCN 251 (454)
Q Consensus 172 ~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~ 251 (454)
. ..+ ......+..+..|..+..++
T Consensus 242 ---------~-~~~-----------------------------------------~~~~~~v~~~~~I~~~~~~g----- 265 (461)
T PLN02172 242 ---------Y-EKL-----------------------------------------PVPQNNLWMHSEIDTAHEDG----- 265 (461)
T ss_pred ---------c-ccC-----------------------------------------cCCCCceEECCcccceecCC-----
Confidence 0 000 00122334455565554433
Q ss_pred eEEEecCCcEEecCEEEEeeccCcCcccccCCCC-ceecCCCceEeccc-cccc-cCceeecCcccccCCccccchhhcc
Q psy1545 252 AYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTP-FELAPDCGIGVNEL-MQTS-ISNVYAAGDVCTPSWDLAKQWFQMR 328 (454)
Q Consensus 252 ~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~-l~~~~~g~i~vd~~-~~t~-~~~Iya~GD~~~~~~~~~~~~~~~~ 328 (454)
.|++.||+.+++|.||+|||++++.+ |++..+ +.++++.-...=.+ +-.. .|+++.+|=.... .
T Consensus 266 -~V~f~DG~~~~~D~Ii~~TGy~~~~p-fL~~~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~-----------~ 332 (461)
T PLN02172 266 -SIVFKNGKVVYADTIVHCTGYKYHFP-FLETNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMG-----------I 332 (461)
T ss_pred -eEEECCCCCccCCEEEECCcCCcccc-ccCcccceeeCCCcchhhHHhhcCCCCCCcEEEEeccccc-----------c
Confidence 38899998899999999999999998 876533 33322211011111 1233 4899999965321 2
Q ss_pred ChHHHHHHHHHHHhhhcCCC
Q psy1545 329 LWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 329 ~~~~A~~~g~~aa~~i~~~~ 348 (454)
..+.+..||+++|+-+.|+.
T Consensus 333 ~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 333 QFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred CchhHHHHHHHHHHHHcCCC
Confidence 45578999999999998865
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-21 Score=194.64 Aligned_cols=318 Identities=15% Similarity=0.248 Sum_probs=153.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccc----------------ccc---ccccc-------
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPV----------------TKL---LSDIT------- 56 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~----------------~~~---~~~~~------- 56 (454)
.+|+|||||++||++|+.|.+. |.+++++|+++..++.|.+... ++. ++++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~--g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~ 79 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE--GLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPD 79 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT--T-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSS
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCC
Confidence 5799999999999999999998 9999999999999988864210 000 11111
Q ss_pred --hhh---hHHHHHhc--CcE--E-EcceEEEEeCc-------ccEEEecc-Cc--EEEecEEEEecCC--CCCCCC--C
Q psy1545 57 --VEE---TDANKFEG--LCT--V-IVDTVAAIDPR-------VNCVITEK-QN--RIKYKTLCICTGA--SPRKIW--Y 112 (454)
Q Consensus 57 --~~~---~~~~~~~~--~i~--~-~~~~v~~i~~~-------~~~v~~~~-g~--~i~~d~lviAtG~--~p~~~~--~ 112 (454)
-.. ++++.|.+ ++. + ++.+|+.++.. ...|++.+ |+ +-.||+||+|||. .|+.|. +
T Consensus 80 f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~ 159 (531)
T PF00743_consen 80 FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSF 159 (531)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----
T ss_pred CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhh
Confidence 112 23333333 332 1 34577777542 23565543 32 4579999999996 477774 4
Q ss_pred C------CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCC-CccccccCCc-chhhh-
Q psy1545 113 S------PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDK-HISATFLDPG-AAEFF- 181 (454)
Q Consensus 113 ~------~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~-~~~~~~~d~~-~~~~~- 181 (454)
+ +.+.+.....+...+ ++|||+|||+|.+|+++|.+++ ..+|++..|+. +++++..+.. ..+.+
T Consensus 160 ~G~e~F~G~i~HS~~yr~~~~f-----~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~ 234 (531)
T PF00743_consen 160 PGLEKFKGEIIHSKDYRDPEPF-----KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVF 234 (531)
T ss_dssp CTGGGHCSEEEEGGG--TGGGG-----TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--------------------
T ss_pred hhhhcCCeeEEccccCcChhhc-----CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccccccc
Confidence 4 345554444444433 4899999999999999999997 78999999765 4455433211 11111
Q ss_pred HHHhhc---cCCCC--hhhhhh-hcccccCCCCCCCCCCccc---cc----cccccCccCCceEEEeCceEEEEEcCCCC
Q psy1545 182 QDSINK---TNTAK--PETIFK-RMRYNTGGEKGPSLGPDWH---TQ----VNLHGSSRDTKITIEYSCEVERIVDSEDD 248 (454)
Q Consensus 182 ~~~l~~---~~~~~--~~~~~~-~~~~~~~~~~~~~l~~~~~---~~----~~~~~~l~~~gv~i~~~~~v~~i~~~~~~ 248 (454)
..++.. ...+. .+++.. .+...+... ...+.|... +. -.+...+....|++.. .|.++.++
T Consensus 235 ~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~-~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~--~I~~~~~~--- 308 (531)
T PF00743_consen 235 STRFSSFLQKNLPESLSNWLLEKKLNKRFDHE-NYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKP--DIKRFTEN--- 308 (531)
T ss_dssp -----------------------------------------------------------------EE---EEEE-SS---
T ss_pred cccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc--cccccccc---
Confidence 111100 00000 011110 111000000 000111100 00 0012233445566653 47777654
Q ss_pred ccceEEEecCCcEE-ecCEEEEeeccCcCcccccCCCCceecCCCceEeccc-ccc--ccCceeecCcccccCCccccch
Q psy1545 249 TCNAYVKLTNGHTH-ACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNEL-MQT--SISNVYAAGDVCTPSWDLAKQW 324 (454)
Q Consensus 249 ~~~~~v~~~~g~~~-~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~-~~t--~~~~Iya~GD~~~~~~~~~~~~ 324 (454)
.+.++||+++ ++|.||+|||++...+ |++..-+... ++.+..-.+ +-. ..|++..+|=+-...
T Consensus 309 ----~v~F~DGs~~e~vD~II~~TGY~~~fp-FL~~~~~~~~-~~~~~LYk~vfp~~~~~ptLafIG~~~~~g------- 375 (531)
T PF00743_consen 309 ----SVIFEDGSTEEDVDVIIFCTGYKFSFP-FLDESLIKVD-DNRVRLYKHVFPPNLDHPTLAFIGLVQPFG------- 375 (531)
T ss_dssp ----EEEETTSEEEEE-SEEEE---EE---T-TB-TTTT-S--SSSSSEETTTEETETTSTTEEESS-SBSSS-------
T ss_pred ----ccccccccccccccccccccccccccc-cccccccccc-cccccccccccccccccccccccccccccc-------
Confidence 3789999775 6999999999999988 8886544432 333322222 212 358899999763211
Q ss_pred hhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 325 FQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 325 ~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
...+.+..||+++|+-+.|..+
T Consensus 376 ---~~fp~~ElQArw~a~v~sG~~~ 397 (531)
T PF00743_consen 376 ---SIFPIFELQARWAARVFSGRVK 397 (531)
T ss_dssp ----HHHHHHHHHHHHHHHHTTSS-
T ss_pred ---cccccccccccccccccccccc
Confidence 2345689999999999988653
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >KOG3851|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-22 Score=178.91 Aligned_cols=305 Identities=14% Similarity=0.151 Sum_probs=200.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEe
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAID 80 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~ 80 (454)
+++|+|||||.+|++.|..+.+.-+..+|.++|+.+.+.+...+...+..+...+-..+....+.. +..++++.|..++
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~~f~ 118 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVKEFN 118 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHHHhcC
Confidence 478999999999999999998876677999999999887776666665555544444433344433 7888889999999
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCCCCCCCC--------CceeeeeccchHHHHHHHhhc---CCe--------EEEE
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASPRKIWYS--------PHVITIRDTDSVAVLQEKLKS---AKK--------IVVI 141 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~--------~~~~~~~~~~~~~~l~~~~~~---~~~--------vvVv 141 (454)
|++++|.+.+|++|.||++|||+|-+-+...|+ +++-+..+....++..+.+.+ +.- +=..
T Consensus 119 P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCA 198 (446)
T KOG3851|consen 119 PDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCA 198 (446)
T ss_pred CCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccC
Confidence 999999999999999999999999876655444 445445555555555444432 211 2223
Q ss_pred cCchhHHHHHHHhc---C--CcEEEEEe--CCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCC
Q psy1545 142 GNGGIATELVHELS---N--VDIVWVVK--DKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGP 214 (454)
Q Consensus 142 G~G~~g~e~a~~l~---g--~~V~~i~~--~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 214 (454)
|+-.-.+-++..+. | .++.++.. -+.++. -...++.+++.
T Consensus 199 GAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFg---Vk~Y~~AL~k~------------------------------ 245 (446)
T KOG3851|consen 199 GAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFG---VKHYADALEKV------------------------------ 245 (446)
T ss_pred CCchhhhhhhHHHHHHhCccccccEEEecCccceec---HHHHHHHHHHH------------------------------
Confidence 44333333333331 2 22333322 112211 01112222222
Q ss_pred ccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC-C--cEEecCEEEEeeccCcCcccccCCCCceecCC
Q psy1545 215 DWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN-G--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPD 291 (454)
Q Consensus 215 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~-g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~ 291 (454)
.++++|++.......++..+++ ..+--.+++ | .+++++++-+....++.. ++....+. |..
T Consensus 246 -----------~~~rni~vn~krnLiEV~~~~~--~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe--~l~~s~~a-dkt 309 (446)
T KOG3851|consen 246 -----------IQERNITVNYKRNLIEVRTNDR--KAVFENLDKPGVTEEIEYSLLHVTPPMSTPE--VLANSDLA-DKT 309 (446)
T ss_pred -----------HHhcceEeeeccceEEEeccch--hhHHHhcCCCCceeEEeeeeeeccCCCCChh--hhhcCccc-Ccc
Confidence 2458899988888888887663 111111222 5 568899988887776644 56666654 788
Q ss_pred CceEecc-ccc-cccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeee
Q psy1545 292 CGIGVNE-LMQ-TSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFT 363 (454)
Q Consensus 292 g~i~vd~-~~~-t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~ 363 (454)
|++.||. .+| +.+||||++|||.+.|. .+.+..+..|..++-+|+..-..|+.+...|.....|
T Consensus 310 GfvdVD~~TlQs~kypNVFgiGDc~n~Pn--------sKTaAAvaaq~~vv~~nl~~~m~g~~pt~~ydGYtSC 375 (446)
T KOG3851|consen 310 GFVDVDQSTLQSKKYPNVFGIGDCMNLPN--------SKTAAAVAAQSPVVDKNLTQVMQGKRPTMKYDGYTSC 375 (446)
T ss_pred cceecChhhhccccCCCceeeccccCCCc--------hhhHHHHHhcCchhhhhHHHHhcCCCcceeecCcccC
Confidence 9999994 577 78999999999998652 2345556788888889988877777665555543334
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-20 Score=182.19 Aligned_cols=280 Identities=20% Similarity=0.211 Sum_probs=180.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
.+|.||||||||+++|..|.+. |++|+++|+.+..++...+. .+......++..+..+.+.+ +++|+.+.....+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~--G~~Vtv~e~~~~~GGll~yG-IP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~- 199 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA--GHDVTVFERVALDGGLLLYG-IPDFKLPKDILDRRLELLERSGVEFKLNVRVGRD- 199 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC--CCeEEEeCCcCCCceeEEec-CchhhccchHHHHHHHHHHHcCeEEEEcceECCc-
Confidence 4799999999999999999998 99999999999888766553 33333445666677777777 9888755333222
Q ss_pred cccEEEeccCcEEEecEEEEecCCC-CCCCCCC-CceeeeeccchHHHHHHH--hh----------cCCeEEEEcCchhH
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGAS-PRKIWYS-PHVITIRDTDSVAVLQEK--LK----------SAKKIVVIGNGGIA 147 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~-p~~~~~~-~~~~~~~~~~~~~~l~~~--~~----------~~~~vvVvG~G~~g 147 (454)
++++. -.-.||.+++|||+. |+..+++ .+.-.++...+++.-... +. .+++++|||+|.++
T Consensus 200 ----it~~~-L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta 274 (457)
T COG0493 200 ----ITLEE-LLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTA 274 (457)
T ss_pred ----CCHHH-HHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCH
Confidence 32221 133469999999984 7777777 333333343333322111 11 23899999999999
Q ss_pred HHHHHHhc--CC-cEEEEEeCCCccccccCCc---chhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccc
Q psy1545 148 TELVHELS--NV-DIVWVVKDKHISATFLDPG---AAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVN 221 (454)
Q Consensus 148 ~e~a~~l~--g~-~V~~i~~~~~~~~~~~d~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (454)
++++.... |+ +|+.+.+...-.. ..+. ......+
T Consensus 275 ~D~~~t~~r~Ga~~v~~~~~~~~~~~--~~~~~~~~~~~~~~-------------------------------------- 314 (457)
T COG0493 275 MDCAGTALRLGAKSVTCFYREDRDDE--TNEWPTWAAQLEVR-------------------------------------- 314 (457)
T ss_pred HHHHHHHhhcCCeEEEEecccccccc--CCcccccchhhhhh--------------------------------------
Confidence 99996654 66 6777652221100 0100 0111111
Q ss_pred cccCccCCceEEEeCceEEEEEcCCCCccceEEE--------------------ecCC-cEEecCEEEEeeccCcCcccc
Q psy1545 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVK--------------------LTNG-HTHACDIVVSAIGVVPNSNIQ 280 (454)
Q Consensus 222 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~--------------------~~~g-~~~~~D~vi~a~G~~p~~~~~ 280 (454)
....+|+...+.....++..+++ ++...+. ..+. ..+++|.|+.|+|+.++....
T Consensus 315 ---~a~eeg~~~~~~~~~~~~~~~e~-GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~ 390 (457)
T COG0493 315 ---SAGEEGVERLPFVQPKAFIGNEG-GRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDG 390 (457)
T ss_pred ---hhhhcCCcccccCCceeEeecCC-CcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccc
Confidence 11335555555555555554332 1111111 1111 468899999999999886512
Q ss_pred cC-CCCceecCCCceEecccc-ccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhc
Q psy1545 281 VH-GTPFELAPDCGIGVNELM-QTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMV 345 (454)
Q Consensus 281 ~~-~~~l~~~~~g~i~vd~~~-~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 345 (454)
.. ..++..+..|.+.+|+.+ +|+.|++||.||+..+. .+...|+.+|+.+|+.|-
T Consensus 391 ~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~----------~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 391 LLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGA----------ALVVWAIAEGREAAKAID 447 (457)
T ss_pred cccccccccCCCCceecccccccccCCCeeeCceeccch----------hhhhhHHhhchHHHHhhh
Confidence 22 225677888999999998 89999999999998753 355679999999998876
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-20 Score=177.72 Aligned_cols=268 Identities=16% Similarity=0.164 Sum_probs=144.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccc--------cccccc-------cccch----------
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTV--------PVTKLL-------SDITV---------- 57 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~--------~~~~~~-------~~~~~---------- 57 (454)
+|+|+||.||++|+.|..|.+.. ..++..+|+.+.+.+..... ++-+.+ +++.+
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~~-~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEHG-DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHH----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred eeEEEEeeCHHHHHHHHHhhhcC-CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 79999999999999999999983 58999999987654322210 000000 00100
Q ss_pred ---------------hhhHHHHHhc--Cc-EEEcceEEEEeCcc------cEEEec----cCcEEEecEEEEecCCCCCC
Q psy1545 58 ---------------EETDANKFEG--LC-TVIVDTVAAIDPRV------NCVITE----KQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 58 ---------------~~~~~~~~~~--~i-~~~~~~v~~i~~~~------~~v~~~----~g~~i~~d~lviAtG~~p~~ 109 (454)
...+.++..+ .- -.+..+|+.|++.. ..|.+. +++.+.++.||+|||..|+.
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~i 161 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRI 161 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE--
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCC
Confidence 0133444444 32 22456888887654 255552 34689999999999999998
Q ss_pred CCCC---C-ceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--C--CcEEEEEeCCCccccccCCcchhhh
Q psy1545 110 IWYS---P-HVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--N--VDIVWVVKDKHISATFLDPGAAEFF 181 (454)
Q Consensus 110 ~~~~---~-~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g--~~V~~i~~~~~~~~~~~d~~~~~~~ 181 (454)
|+.. . ....+++.+-.... +....+++|+|||||.+|.|++..|. + .+|+|+.|++.+.+....+-..+.+
T Consensus 162 P~~~~~~~~~~~v~Hss~~~~~~-~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f 240 (341)
T PF13434_consen 162 PEWFQDLPGSPRVFHSSEYLSRI-DQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIF 240 (341)
T ss_dssp -GGGGGGTT-TTEEEGGGHHHHH-T-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGG
T ss_pred CcchhhcCCCCCEEEehHhhhcc-ccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhc
Confidence 8764 1 12223343333332 22345899999999999999999986 3 5899999999887742222222232
Q ss_pred HHH----hhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec
Q psy1545 182 QDS----INKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT 257 (454)
Q Consensus 182 ~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~ 257 (454)
.+. +-....++...+..+.+-++...+.+.+..++...++..+...+..++++.+++|++++..++ ..+.+.+.
T Consensus 241 ~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~--~~~~l~~~ 318 (341)
T PF13434_consen 241 SPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGD--GGVRLTLR 318 (341)
T ss_dssp SHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES---SSEEEEEE
T ss_pred CchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCC--CEEEEEEE
Confidence 222 211122222334444444455555555555555555443333455799999999999987763 25667776
Q ss_pred CC-----cEEecCEEEEeeccC
Q psy1545 258 NG-----HTHACDIVVSAIGVV 274 (454)
Q Consensus 258 ~g-----~~~~~D~vi~a~G~~ 274 (454)
+. .++++|.||+|||++
T Consensus 319 ~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 319 HRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp ETTT--EEEEEESEEEE---EE
T ss_pred ECCCCCeEEEecCEEEEcCCcc
Confidence 52 678999999999985
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-20 Score=168.37 Aligned_cols=124 Identities=25% Similarity=0.272 Sum_probs=80.8
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-----cccch-h--h--hHHHHHhc-CcEE-
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-----SDITV-E--E--TDANKFEG-LCTV- 71 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-----~~~~~-~--~--~~~~~~~~-~i~~- 71 (454)
||||||||+||++||.+|++. +.+++++++.+...+. ...++... ..... . . ...+.+.. ++++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~--~~~v~ii~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 76 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP--GAKVLIIEKSPGTPYN--SGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIR 76 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--TSEEEEESSSSHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEE
T ss_pred CEEEEecHHHHHHHHHHHhcC--CCeEEEEecccccccc--cccccccccccccccccccccccccccccccccceEEEe
Confidence 799999999999999999986 9999999988754321 11111111 00000 0 1 23334444 9998
Q ss_pred EcceEEEEeCcccEE----------EeccCcEEEecEEEEecCCCCCCCCCCC--ceeeeeccchHHHHHHH
Q psy1545 72 IVDTVAAIDPRVNCV----------ITEKQNRIKYKTLCICTGASPRKIWYSP--HVITIRDTDSVAVLQEK 131 (454)
Q Consensus 72 ~~~~v~~i~~~~~~v----------~~~~g~~i~~d~lviAtG~~p~~~~~~~--~~~~~~~~~~~~~l~~~ 131 (454)
+..++..++...+.+ ...++.++.||+||+|||+.|+.|+++. ......+..++..+.+.
T Consensus 77 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~ 148 (201)
T PF07992_consen 77 LNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLEL 148 (201)
T ss_dssp HHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTH
T ss_pred eccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCcccccccccccccccccc
Confidence 467999998877742 1224568999999999999988887772 22333444555555443
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.6e-19 Score=165.15 Aligned_cols=307 Identities=13% Similarity=0.116 Sum_probs=196.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccc--------cccccc---------------------
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTV--------PVTKLL--------------------- 52 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~--------~~~~~~--------------------- 52 (454)
.+|+|.||-||+.|+.|..|.+.. +.++..+|+.+.+.+..... ++-+.+
T Consensus 5 ~~DliGIG~GPfNL~LA~ll~e~~-~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~R 83 (436)
T COG3486 5 VLDLIGIGIGPFNLSLAALLEEHS-GLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHGR 83 (436)
T ss_pred ceeeEEEccCchHHHHHHHhcccc-CcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcch
Confidence 379999999999999999999873 47899999998764322210 000000
Q ss_pred -------cccchhhh----HHHHHhcCcEE--EcceEE---EEeCccc---EEEeccCcEEEecEEEEecCCCCCCCCCC
Q psy1545 53 -------SDITVEET----DANKFEGLCTV--IVDTVA---AIDPRVN---CVITEKQNRIKYKTLCICTGASPRKIWYS 113 (454)
Q Consensus 53 -------~~~~~~~~----~~~~~~~~i~~--~~~~v~---~i~~~~~---~v~~~~g~~i~~d~lviAtG~~p~~~~~~ 113 (454)
..+.+.+. +.+|..+.... +...|+ .++.+.. .+.+.++.+++++.|||++|.+|+.|+.-
T Consensus 84 Ly~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP~~f 163 (436)
T COG3486 84 LYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIPPCF 163 (436)
T ss_pred HhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCChHH
Confidence 01111122 22333332222 234666 4544433 24555677999999999999999999754
Q ss_pred -----CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc------CCcEEEEEeCCCccccccCCcchhhhH
Q psy1545 114 -----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS------NVDIVWVVKDKHISATFLDPGAAEFFQ 182 (454)
Q Consensus 114 -----~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~------g~~V~~i~~~~~~~~~~~d~~~~~~~~ 182 (454)
++++ ++.+-+.+..+. ...++|.|||+|.+|.|+-..|. ..++.|+.|+..+.+--..+-..+.+.
T Consensus 164 ~~l~~~~vf--Hss~~~~~~~~~-~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~ 240 (436)
T COG3486 164 RSLIGERVF--HSSEYLERHPEL-LQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFS 240 (436)
T ss_pred hCcCcccee--ehHHHHHhhHHh-hcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcC
Confidence 3444 344444343332 23455999999999999999885 456999999998876321121222221
Q ss_pred HHhhc----cCCCChhhhhhhcccccCCCCCCCCCCccccccccccCc-cCCceEEEeCceEEEEEcCCCCccceEEEec
Q psy1545 183 DSINK----TNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSS-RDTKITIEYSCEVERIVDSEDDTCNAYVKLT 257 (454)
Q Consensus 183 ~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~ 257 (454)
+.+.+ ...+....+..+.+ .+...+...+..++...++.+... .+..+.++.++++..++..++ + .+.+.+.
T Consensus 241 P~y~dyfy~l~~~~r~~ll~~~~-~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~-g-~~~l~~~ 317 (436)
T COG3486 241 PEYTDYFYGLPPEARDELLRKQR-LLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGD-G-RYRLTLR 317 (436)
T ss_pred chhHHHHhcCCHHHHHHHHhhcC-ccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCC-c-eEEEEEe
Confidence 11111 12223344555555 666667777777777766644332 467899999999999998875 2 2555553
Q ss_pred C-----CcEEecCEEEEeeccCcCcccccCCCC--ceecCCCceEeccccc--ccc---CceeecCcccc
Q psy1545 258 N-----GHTHACDIVVSAIGVVPNSNIQVHGTP--FELAPDCGIGVNELMQ--TSI---SNVYAAGDVCT 315 (454)
Q Consensus 258 ~-----g~~~~~D~vi~a~G~~p~~~~~~~~~~--l~~~~~g~i~vd~~~~--t~~---~~Iya~GD~~~ 315 (454)
. .+++++|.||+|||++...+.|++... +..+++|...|++.++ +.. -.||+.|-+..
T Consensus 318 ~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~h 387 (436)
T COG3486 318 HHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELH 387 (436)
T ss_pred eccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccc
Confidence 2 267999999999999966554665432 5668899999998766 221 35999996654
|
|
| >KOG0399|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-19 Score=183.61 Aligned_cols=309 Identities=19% Similarity=0.182 Sum_probs=177.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
++|.|||+|||||+||-.|.+. |+.|+++|+.+..++...+.-....+..+ +.++..+.+.. +|+|+...- |.
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~--gh~v~vyer~dr~ggll~ygipnmkldk~-vv~rrv~ll~~egi~f~tn~e--ig- 1859 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKA--GHTVTVYERSDRVGGLLMYGIPNMKLDKF-VVQRRVDLLEQEGIRFVTNTE--IG- 1859 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhc--CcEEEEEEecCCcCceeeecCCccchhHH-HHHHHHHHHHhhCceEEeecc--cc-
Confidence 5799999999999999999998 99999999999998877664332333323 44555555666 999874321 11
Q ss_pred cccEEEeccCcEEEecEEEEecCCC-CCCCCCC-CceeeeeccchHHH-HHHHh-----------hcCCeEEEEcCchhH
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGAS-PRKIWYS-PHVITIRDTDSVAV-LQEKL-----------KSAKKIVVIGNGGIA 147 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~-p~~~~~~-~~~~~~~~~~~~~~-l~~~~-----------~~~~~vvVvG~G~~g 147 (454)
+.+.+ |+-.-.+|.+|+|+|+. |+..|++ .+...++-.-++.. -.+.+ .++|+|+|||||.+|
T Consensus 1860 --k~vs~-d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg 1936 (2142)
T KOG0399|consen 1860 --KHVSL-DELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTG 1936 (2142)
T ss_pred --ccccH-HHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCcc
Confidence 22433 44455799999999985 9988988 33333332222211 11111 248999999999999
Q ss_pred HHHHHHhc--CCc-EEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccC-CCCCCCCCCccccccccc
Q psy1545 148 TELVHELS--NVD-IVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTG-GEKGPSLGPDWHTQVNLH 223 (454)
Q Consensus 148 ~e~a~~l~--g~~-V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 223 (454)
.++...-. |+. |.-++--+..-+..-....+..+.+.++- ... .+...+.+.+.....-+.
T Consensus 1937 ~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrv---------------dygh~e~~~~~g~dpr~y~vlt 2001 (2142)
T KOG0399|consen 1937 TDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRV---------------DYGHAEAKEHYGSDPRTYSVLT 2001 (2142)
T ss_pred ccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEe---------------ecchHHHHHHhCCCcceeeeee
Confidence 98775432 442 33332211111100001111111111100 000 001112222222211111
Q ss_pred cCc-cCCceEEEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEEEeeccCcCcccccCCCCceecCCCceEe-ccc
Q psy1545 224 GSS-RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGV-NEL 299 (454)
Q Consensus 224 ~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~v-d~~ 299 (454)
+.+ ...+ ..+++-+..+++..++..+.+.+.--++ +.++||++++|.|+........+..+++.+.++.|.. +..
T Consensus 2002 k~f~~~~~-g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~ 2080 (2142)
T KOG0399|consen 2002 KRFIGDDN-GNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDS 2080 (2142)
T ss_pred eeeeccCC-CceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCcc
Confidence 111 1011 1122223333333222133555544333 6799999999999965443266677788887777776 366
Q ss_pred cccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 300 MQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 300 ~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
+.|++++|||+|||-.+. .+..-|+++||.+|+.+=.
T Consensus 2081 y~t~v~~vfaagdcrrgq----------slvvwai~egrq~a~~vd~ 2117 (2142)
T KOG0399|consen 2081 YSTDVAKVFAAGDCRRGQ----------SLVVWAIQEGRQAARQVDE 2117 (2142)
T ss_pred ccccccceeecccccCCc----------eEEEEEehhhhHHHHHHHH
Confidence 889999999999997653 2444589999999987654
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=180.89 Aligned_cols=300 Identities=13% Similarity=0.089 Sum_probs=171.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc-----------------cccc-cccccc----cchhhh
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK-----------------TVPV-TKLLSD----ITVEET 60 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~-----------------~~~~-~~~~~~----~~~~~~ 60 (454)
++|+||||||||++||+.|++. |++|+++|+.+..+...+ ..+. ...+.. +++...
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~--Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~~k~ 461 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRS--GHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRWDKN 461 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccchHH
Confidence 5899999999999999999998 999999998643211110 0000 011111 222222
Q ss_pred HHH---HHhc---CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCC-CCCCCCCC-CceeeeeccchHHHHHHHh
Q psy1545 61 DAN---KFEG---LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGA-SPRKIWYS-PHVITIRDTDSVAVLQEKL 132 (454)
Q Consensus 61 ~~~---~~~~---~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~-~p~~~~~~-~~~~~~~~~~~~~~l~~~~ 132 (454)
..+ .+.+ ++.++.+.....+ ++.++-....||+|+||||+ .|+.++++ .+...+.+..++.......
T Consensus 462 ~l~~i~~il~~g~~v~~~~gv~lG~d-----it~edl~~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l~~~ 536 (1028)
T PRK06567 462 NLDILRLILERNNNFKYYDGVALDFN-----ITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTLQSG 536 (1028)
T ss_pred HHHHHHHHHhcCCceEEECCeEECcc-----CCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHHhhc
Confidence 222 2222 4555555332222 22222134679999999999 69999988 3344455555544332111
Q ss_pred -----------hcCCeEEEEcCchhHHHHHHHhc-----CCcEEEEEeCCCccccccCCcchhhhHHHhhccC----CCC
Q psy1545 133 -----------KSAKKIVVIGNGGIATELVHELS-----NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTN----TAK 192 (454)
Q Consensus 133 -----------~~~~~vvVvG~G~~g~e~a~~l~-----g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~----~~~ 192 (454)
..+++++|||||++|+|+|.... +.++++....++.++. +|++.++.+...+++.- .++
T Consensus 537 ~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~-~d~eia~~f~~h~r~~g~~~~~~~ 615 (1028)
T PRK06567 537 GAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTE-EDKEIAEEFIAHAKLFKEAKNNEE 615 (1028)
T ss_pred ccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhccc-ccHHHHHHHHHHHHhhcchhccch
Confidence 12579999999999999998432 6677777776666664 78888888887776510 000
Q ss_pred hhhhhhh---cccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec------------
Q psy1545 193 PETIFKR---MRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT------------ 257 (454)
Q Consensus 193 ~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~------------ 257 (454)
...+..+ ..+..+..... .|....-..-.+...+.||.++.+....++..+++ +....+++.
T Consensus 616 v~~l~~~~G~VtIvYRr~~~e--mpA~~~~~eEv~~A~eEGV~f~~~~~P~~i~~d~~-g~v~~l~~~~~~~~~~~~~~~ 692 (1028)
T PRK06567 616 LRKVFNKLGGATVYYRGRLQD--SPAYKLNHEELIYALALGVDFKENMQPLRINVDKY-GHVESVEFENRNRHCEQSKTA 692 (1028)
T ss_pred hhhhhccCCceEEEecCChhh--CCCCCCCHHHHHHHHHcCcEEEecCCcEEEEecCC-CeEEEEEEEEEeccccccccc
Confidence 0000000 00100000000 00000000001112458999999999999876532 223333221
Q ss_pred --C----------------CcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCceeecCcccccCCc
Q psy1545 258 --N----------------GHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWD 319 (454)
Q Consensus 258 --~----------------g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~ 319 (454)
+ ..+++||.||+|+|..||+. +.. .+..+-++.+++|+-
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~-~~~-------------~~~s~~~d~~~~f~G--------- 749 (1028)
T PRK06567 693 WQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQ-FDE-------------DKYSYFGDCNPKYSG--------- 749 (1028)
T ss_pred ccccccccCCcCcccCCCccccccCCEEEEecccCCccc-ccc-------------cccccccCCCCcccc---------
Confidence 1 14689999999999999987 420 011222334455543
Q ss_pred cccchhhccChHHHHHHHHHHHhhhc
Q psy1545 320 LAKQWFQMRLWTQAKHMGTYAAKCMV 345 (454)
Q Consensus 320 ~~~~~~~~~~~~~A~~~g~~aa~~i~ 345 (454)
....|+.+|+.++.+|.
T Consensus 750 ---------tvv~A~as~k~~~~~i~ 766 (1028)
T PRK06567 750 ---------SVVKALASSKEGYDAIN 766 (1028)
T ss_pred ---------HHHHHHHHHHhHHHHHH
Confidence 23468999999999985
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-16 Score=155.32 Aligned_cols=161 Identities=17% Similarity=0.196 Sum_probs=109.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCe-EEEECCCCccccccccccccc---------------------cccccc-hh
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGES-IGLVTPSGIVKAVTKTVPVTK---------------------LLSDIT-VE 58 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~-v~lie~~~~~~~~~~~~~~~~---------------------~~~~~~-~~ 58 (454)
++||+|||||++|+++|++|+++ +.. ++++|+++..++.|++..+.. ....+. +.
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~--g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~ 85 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQA--GVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIK 85 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHc--CCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHH
Confidence 57999999999999999999999 555 999999987776655522110 111111 11
Q ss_pred hhHHHHHhc-----CcEEEcc-eEEEEeCcc--cEEEeccCcE--EEecEEEEecCC--CCCCCCCC------Cceeeee
Q psy1545 59 ETDANKFEG-----LCTVIVD-TVAAIDPRV--NCVITEKQNR--IKYKTLCICTGA--SPRKIWYS------PHVITIR 120 (454)
Q Consensus 59 ~~~~~~~~~-----~i~~~~~-~v~~i~~~~--~~v~~~~g~~--i~~d~lviAtG~--~p~~~~~~------~~~~~~~ 120 (454)
.....++.. .+.+... ++...+.++ .+|+++++.. +.+|+||+|||. .|+.|.++ ..+++..
T Consensus 86 ~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~ 165 (443)
T COG2072 86 DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSA 165 (443)
T ss_pred HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEchh
Confidence 112222222 3444332 333333332 3677776654 569999999995 68888887 2344444
Q ss_pred ccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc
Q psy1545 121 DTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS 169 (454)
Q Consensus 121 ~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~ 169 (454)
...+...+ .+|+|+|||+|.+|++++..|. +.+||++.|++...
T Consensus 166 ~~~~~~~~-----~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~ 211 (443)
T COG2072 166 DWPNPEDL-----RGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI 211 (443)
T ss_pred cCCCcccc-----CCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence 44445444 3999999999999999999997 89999999988654
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.4e-17 Score=146.10 Aligned_cols=158 Identities=18% Similarity=0.207 Sum_probs=91.8
Q ss_pred EEECCCHHHHHHHHHHhhcCCCCe-EEEECCCCccccccccc-cc----c-c------cccc---cc-------------
Q psy1545 6 LIIGGGIAGVSCVEGLAFLHPGES-IGLVTPSGIVKAVTKTV-PV----T-K------LLSD---IT------------- 56 (454)
Q Consensus 6 vIIGgG~aGl~aA~~l~~~~~g~~-v~lie~~~~~~~~~~~~-~~----~-~------~~~~---~~------------- 56 (454)
+|||||++|+++|..|.+. |.+ ++|+|+++.+++.|... .. . . .+.. +.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~--g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER--GIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT--T---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHhC--CCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 7999999999999999998 778 99999997766544321 00 0 0 0000 00
Q ss_pred -hh---hhHHHHHhc--CcEEEc-ceEEEEeCcc--cEEEeccCcEEEecEEEEecCC--CCCCCCCCC-ceeeeeccch
Q psy1545 57 -VE---ETDANKFEG--LCTVIV-DTVAAIDPRV--NCVITEKQNRIKYKTLCICTGA--SPRKIWYSP-HVITIRDTDS 124 (454)
Q Consensus 57 -~~---~~~~~~~~~--~i~~~~-~~v~~i~~~~--~~v~~~~g~~i~~d~lviAtG~--~p~~~~~~~-~~~~~~~~~~ 124 (454)
.. .++++.+.+ ++++.. .+|+.+..++ ..|++.+++.+++|+||+|||. .|+.|+++. .........+
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~~~~h~~~ 158 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFRPIIHSAD 158 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCSEEEEGGG
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccccccccceEehhh
Confidence 00 122333333 777654 5888887654 4788877878999999999996 688777764 1111112222
Q ss_pred HHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 125 VAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 125 ~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
+..... ..+++|+|||+|.+|+++|..|. +.+|+|+.|++.
T Consensus 159 ~~~~~~--~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 159 WRDPED--FKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp -STTGG--CTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred cCChhh--cCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 221111 14799999999999999999997 899999999864
|
... |
| >KOG1800|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.1e-17 Score=147.77 Aligned_cols=163 Identities=18% Similarity=0.207 Sum_probs=107.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+|.|||+||||+.+|..|.++.++.+|.|+|+.+.+.+...+.-.+....--.....+.+-... ...|+.+ .+
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~v---- 96 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKV---- 96 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEeccee----
Confidence 47999999999999999999976789999999999988877764433322212222222222222 5554432 11
Q ss_pred CcccEEEeccCcEEEecEEEEecCCC-CCCCCCC-CceeeeeccchHHHHHHHhh---------cCCeEEEEcCchhHHH
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGAS-PRKIWYS-PHVITIRDTDSVAVLQEKLK---------SAKKIVVIGNGGIATE 149 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~-p~~~~~~-~~~~~~~~~~~~~~l~~~~~---------~~~~vvVvG~G~~g~e 149 (454)
...+.+. .-+-.||.+|||.|+. ++...+| +...++.+...+....+-+. ...+++|||.|.++++
T Consensus 97 --G~dvsl~-eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlD 173 (468)
T KOG1800|consen 97 --GRDVSLK-ELTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALD 173 (468)
T ss_pred --cccccHH-HHhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCcccccceEEEEccCchhhh
Confidence 0113331 1245699999999995 8888898 44455555555444433211 2679999999999999
Q ss_pred HHHHhcC------------------------CcEEEEEeCCCccccc
Q psy1545 150 LVHELSN------------------------VDIVWVVKDKHISATF 172 (454)
Q Consensus 150 ~a~~l~g------------------------~~V~~i~~~~~~~~~~ 172 (454)
+|..|.. .+|+++.|+..+...|
T Consensus 174 vARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aF 220 (468)
T KOG1800|consen 174 VARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAF 220 (468)
T ss_pred hhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceee
Confidence 9988741 2588888877655443
|
|
| >KOG1399|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-15 Score=146.98 Aligned_cols=266 Identities=15% Similarity=0.146 Sum_probs=159.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccc--------ccccc-----------ccccch-----
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTV--------PVTKL-----------LSDITV----- 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~--------~~~~~-----------~~~~~~----- 57 (454)
..+++|||||+|||++|+.|++. |++++++|+.+..++.|.+. .+... ++++..
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~--g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~ 83 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE--GHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP 83 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC--CCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence 67999999999999999999998 99999999999999888776 21000 111111
Q ss_pred -----h---hhHHHHHhc--Cc--EEE-cceEEEEeCc---ccEEEeccC----cEEEecEEEEecCCC--CCCCCCC--
Q psy1545 58 -----E---ETDANKFEG--LC--TVI-VDTVAAIDPR---VNCVITEKQ----NRIKYKTLCICTGAS--PRKIWYS-- 113 (454)
Q Consensus 58 -----~---~~~~~~~~~--~i--~~~-~~~v~~i~~~---~~~v~~~~g----~~i~~d~lviAtG~~--p~~~~~~-- 113 (454)
. ..+++.|.+ ++ .+. ..++..++.. ...|...++ ...-||.|++|||-. |+.|.++
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~ 163 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGP 163 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCC
Confidence 1 123333433 32 222 3344455443 335655433 367899999999986 7777664
Q ss_pred ------CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHh
Q psy1545 114 ------PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSI 185 (454)
Q Consensus 114 ------~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l 185 (454)
+.+++.++......+ .+|+|+|||+|.+|+|++..++ ..+|++..+ ..... +. ....
T Consensus 164 ~~~~f~G~~iHS~~Yk~~e~f-----~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~---~~-----~~~~- 228 (448)
T KOG1399|consen 164 GIESFKGKIIHSHDYKSPEKF-----RDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVH---VE-----PPEI- 228 (448)
T ss_pred chhhcCCcceehhhccCcccc-----cCceEEEECCCccHHHHHHHHHHhccCcceeee-ccccc---cc-----ccce-
Confidence 224444443333333 3799999999999999999975 667777654 10000 00 0000
Q ss_pred hccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecC
Q psy1545 186 NKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACD 265 (454)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D 265 (454)
...++..+.. +..+..++ .+.+.++....+|
T Consensus 229 -----------------------------------------~~~~~~~~~~--i~~~~e~~------~~~~~~~~~~~~D 259 (448)
T KOG1399|consen 229 -----------------------------------------LGENLWQVPS--IKSFTEDG------SVFEKGGPVERVD 259 (448)
T ss_pred -----------------------------------------eecceEEccc--cccccCcc------eEEEcCceeEEee
Confidence 0023333332 55555554 2555677888999
Q ss_pred EEEEeeccCcCcccccCCCCceecCCCceEecccc-----ccccCceeecC-cccccCCccccchhhccChHHHHHHHHH
Q psy1545 266 IVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELM-----QTSISNVYAAG-DVCTPSWDLAKQWFQMRLWTQAKHMGTY 339 (454)
Q Consensus 266 ~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~-----~t~~~~Iya~G-D~~~~~~~~~~~~~~~~~~~~A~~~g~~ 339 (454)
.+|+|||+.=..+ +++..+. +.+++.. ..-.|..++-| .-+..+... ...+....|++.
T Consensus 260 ~ii~ctgy~y~fP-fl~~~~~-------~~~~~~~~~pl~k~~~p~~~~~~~~~~~l~~~~-------~~f~~~e~Q~r~ 324 (448)
T KOG1399|consen 260 RIIFCTGYKYKFP-FLETLGL-------GTVRDNIVGPLYKKVFPPALAPGLSLAGLPLIQ-------IPFPMFELQARW 324 (448)
T ss_pred eEEEeeeeEeecc-eeccCCc-------eeeccCcccchheeccchhhCccccccccCeee-------Eeecceehhhhh
Confidence 9999999987776 6654421 2222221 12234455555 222222110 123456788888
Q ss_pred HHhhhcCCC
Q psy1545 340 AAKCMVGAV 348 (454)
Q Consensus 340 aa~~i~~~~ 348 (454)
+++-+.+..
T Consensus 325 ~~~v~~G~~ 333 (448)
T KOG1399|consen 325 VAAVLEGRL 333 (448)
T ss_pred hHhhhcCCC
Confidence 888888764
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=149.45 Aligned_cols=291 Identities=14% Similarity=0.107 Sum_probs=151.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccccccc-chhhhHHHHHhc-CcEEEcceEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDI-TVEETDANKFEG-LCTVIVDTVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~i~~~~~~v~~i~ 80 (454)
.+|+||||||||+.||..|.+. .+++|+|+|+.+.+++...+.-.+.. ... .+...+...+.. +++++.+ + .+.
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~pgGLvR~GVaPdh-~~~k~v~~~f~~~~~~~~v~f~gn-v-~VG 115 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPYGLIRYGVAPDH-IHVKNTYKTFDPVFLSPNYRFFGN-V-HVG 115 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCCccEEEEeCCCCC-ccHHHHHHHHHHHHhhCCeEEEee-e-Eec
Confidence 4799999999999999987643 28999999999999877766432221 222 121222222333 6776521 1 111
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCCCCCCCC-----------C-------ceeeeecc-------chHH---HHHHHh
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASPRKIWYS-----------P-------HVITIRDT-------DSVA---VLQEKL 132 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~-----------~-------~~~~~~~~-------~~~~---~l~~~~ 132 (454)
. .++.++- .-.||.||+|+|+.+..++++ + +++...+. -+.. .....+
T Consensus 116 ~---Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL 191 (506)
T PTZ00188 116 V---DLKMEEL-RNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYL 191 (506)
T ss_pred C---ccCHHHH-HhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEeecCCCCccccccccccc
Confidence 1 1322221 237999999999987655521 1 22211111 1110 111111
Q ss_pred ---hcCCeEEEEcCchhHHHHHHHhc-----------------------CCcEEEEEeCCCccccccCCcchhhhHHHhh
Q psy1545 133 ---KSAKKIVVIGNGGIATELVHELS-----------------------NVDIVWVVKDKHISATFLDPGAAEFFQDSIN 186 (454)
Q Consensus 133 ---~~~~~vvVvG~G~~g~e~a~~l~-----------------------g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~ 186 (454)
...++++|||.|++|+++|..|. -.+|+++.|+......|-.+++.++..-.
T Consensus 192 ~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~~l~-- 269 (506)
T PTZ00188 192 NSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLE-- 269 (506)
T ss_pred cccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHhcCC--
Confidence 13578999999999999998753 12699999987666554333333322100
Q ss_pred ccCCCChhhhhhhcccc-cCCCCCCCCCCc----------ccccccc--cc-C--ccCCceEEEeCceEEEEEcCCCCcc
Q psy1545 187 KTNTAKPETIFKRMRYN-TGGEKGPSLGPD----------WHTQVNL--HG-S--SRDTKITIEYSCEVERIVDSEDDTC 250 (454)
Q Consensus 187 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~----------~~~~~~~--~~-~--l~~~gv~i~~~~~v~~i~~~~~~~~ 250 (454)
..+........... .... ...+... +...... .. . -..+-+.+++.....+|...+ +.
T Consensus 270 ---~~~v~v~~~d~~~~~~~~~-~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~~~--~~ 343 (506)
T PTZ00188 270 ---NTKVILSKKNYDLCCHLKS-DEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRPID--GA 343 (506)
T ss_pred ---CCeEEEChhhhcccccccc-hhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCceEEECCC--Cc
Confidence 00000000000000 0000 0000000 0000000 00 0 012567788888888887522 12
Q ss_pred ceEEEec-----------CC--cEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccc--cccCceeecCcccc
Q psy1545 251 NAYVKLT-----------NG--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQ--TSISNVYAAGDVCT 315 (454)
Q Consensus 251 ~~~v~~~-----------~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~--t~~~~Iya~GD~~~ 315 (454)
+..+++. .| ++++||+|+-|+|++... + . ++..| +. +... ..+ +..|++|++|.+-.
T Consensus 344 v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p--~-~--g~pFd-~~-~~n~-~grv~~~~~g~Y~~GWiKr 415 (506)
T PTZ00188 344 MKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSN--F-A--ENLYN-QS-VQMF-KEDIGQHKFAIFKAGWFDK 415 (506)
T ss_pred EeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCC--C-C--CCCcc-cc-CCCC-CCcccCCCCCcEEeeecCc
Confidence 3334433 23 579999999999998764 2 2 23344 22 2221 122 23799999999987
Q ss_pred cC
Q psy1545 316 PS 317 (454)
Q Consensus 316 ~~ 317 (454)
+|
T Consensus 416 GP 417 (506)
T PTZ00188 416 GP 417 (506)
T ss_pred CC
Confidence 65
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=138.13 Aligned_cols=105 Identities=15% Similarity=0.147 Sum_probs=77.0
Q ss_pred CCceEEEeCceEEEEEcCCCCccceEEEecCC-----cEEecCEEEEeeccCcCcc--cccCCCCceecCCCceEec-cc
Q psy1545 228 DTKITIEYSCEVERIVDSEDDTCNAYVKLTNG-----HTHACDIVVSAIGVVPNSN--IQVHGTPFELAPDCGIGVN-EL 299 (454)
Q Consensus 228 ~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g-----~~~~~D~vi~a~G~~p~~~--~~~~~~~l~~~~~g~i~vd-~~ 299 (454)
+.||.++.+ ++.+|....+ ..+.|..+|. .++++|+|++++|..|... .+...+|+..+++||+... +.
T Consensus 427 ~~gV~fIRG-rvaei~e~p~--~~l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPk 503 (622)
T COG1148 427 DYGVRFIRG-RVAEIAEFPK--KKLIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPK 503 (622)
T ss_pred hhchhhhcC-ChHHheeCCC--CeeEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCC
Confidence 479999988 6666665543 2356666553 5789999999999998653 2455668889999999887 56
Q ss_pred cc---cccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 300 MQ---TSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 300 ~~---t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
++ |+.++||.+|-|.++ +-...++.||..||...+.
T Consensus 504 l~pv~s~~~GIflAG~aqgP-----------kdI~~siaqa~aAA~kA~~ 542 (622)
T COG1148 504 LRPVDSNRDGIFLAGAAQGP-----------KDIADSIAQAKAAAAKAAQ 542 (622)
T ss_pred cccccccCCcEEEeecccCC-----------ccHHHHHHHhHHHHHHHHH
Confidence 66 789999999987653 3455677787777765443
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-14 Score=142.02 Aligned_cols=157 Identities=13% Similarity=-0.080 Sum_probs=105.9
Q ss_pred EEEEcCchhHHHHH-HHh------cCCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCC
Q psy1545 138 IVVIGNGGIATELV-HEL------SNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP 210 (454)
Q Consensus 138 vvVvG~G~~g~e~a-~~l------~g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (454)
=.|++.+.+|+|.+ ..+ .|++|+++...++.++.. ++.+.+.+.+.
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~---rL~~aL~~~l~------------------------ 270 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL---RLQNALRRAFE------------------------ 270 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH---HHHHHHHHHHH------------------------
Confidence 36789999999998 544 299999999888877642 34444545443
Q ss_pred CCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEEEeeccCcCccccc-------
Q psy1545 211 SLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPNSNIQV------- 281 (454)
Q Consensus 211 ~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi~a~G~~p~~~~~~------- 281 (454)
+.|+++++++.|.+++..++ ....+...+| ..+++|.+|+|+|+.+... +.
T Consensus 271 -----------------~~Gv~I~~g~~V~~v~~~~~--~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~G-L~a~~~~i~ 330 (422)
T PRK05329 271 -----------------RLGGRIMPGDEVLGAEFEGG--RVTAVWTRNHGDIPLRARHFVLATGSFFSGG-LVAERDGIR 330 (422)
T ss_pred -----------------hCCCEEEeCCEEEEEEEeCC--EEEEEEeeCCceEEEECCEEEEeCCCcccCc-eeccCCccc
Confidence 38999999999999986552 2333334445 4589999999999876543 21
Q ss_pred ----------------------------CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccC-hHH
Q psy1545 282 ----------------------------HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRL-WTQ 332 (454)
Q Consensus 282 ----------------------------~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~-~~~ 332 (454)
...|+.+|+ ....+|...++..+|+||+|++.+++.+.. .++ .-.
T Consensus 331 Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~-~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~-----~~~g~Gv 404 (422)
T PRK05329 331 EPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDA-TLRPLDSQGGPVIENLYAAGAVLGGYDPIR-----EGCGSGV 404 (422)
T ss_pred cccCCCCCCCCCchhhhhhhhhccCCchhhcCceECC-CcCcccCCCCeeccceEEeeehhcCCchHH-----hCCCchh
Confidence 112333332 233345555567899999999998754321 111 236
Q ss_pred HHHHHHHHHhhhcCC
Q psy1545 333 AKHMGTYAAKCMVGA 347 (454)
Q Consensus 333 A~~~g~~aa~~i~~~ 347 (454)
|+..|..||++|+..
T Consensus 405 a~~ta~~a~~~~~~~ 419 (422)
T PRK05329 405 ALATALHAAEQIAEE 419 (422)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888899999988753
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-11 Score=91.58 Aligned_cols=78 Identities=26% Similarity=0.462 Sum_probs=69.5
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGP 214 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 214 (454)
|++|||||++|+|+|..|. +.+||++++++.+++ .++++....+.+.+++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~-~~~~~~~~~~~~~l~~--------------------------- 52 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP-GFDPDAAKILEEYLRK--------------------------- 52 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST-TSSHHHHHHHHHHHHH---------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh-hcCHHHHHHHHHHHHH---------------------------
Confidence 6899999999999999997 999999999999994 5899999999888866
Q ss_pred ccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC
Q psy1545 215 DWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG 259 (454)
Q Consensus 215 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g 259 (454)
.||++++++.+++++.+++ . ++|+++||
T Consensus 53 --------------~gV~v~~~~~v~~i~~~~~--~-~~V~~~~g 80 (80)
T PF00070_consen 53 --------------RGVEVHTNTKVKEIEKDGD--G-VEVTLEDG 80 (80)
T ss_dssp --------------TTEEEEESEEEEEEEEETT--S-EEEEEETS
T ss_pred --------------CCCEEEeCCEEEEEEEeCC--E-EEEEEecC
Confidence 8999999999999998874 2 55888876
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.3e-10 Score=113.53 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=39.4
Q ss_pred cCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 289 APDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 289 ~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
...|+|.||...||++||+||+|+|+.......+... -.....+...|+.|+++++.
T Consensus 308 ~t~GGi~vd~~~~t~IpGLyAaGE~a~~G~hG~nrl~-gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 308 YTIGGISVDTFYRTGIKNLYAIGEAASNGFHGANRLA-SNSLLECIVSGLEVARTISR 364 (466)
T ss_pred ecCCCEEECCCCcccCCCEEECccccccCCCCCCcch-hHHHHHHHHHHHHHHHHHhh
Confidence 3479999999999999999999999753233322100 01123466778889988875
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.6e-10 Score=104.32 Aligned_cols=105 Identities=20% Similarity=0.299 Sum_probs=72.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc--------cc-------------ccc---cc---------
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA--------VT-------------KTV---PV--------- 48 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~--------~~-------------~~~---~~--------- 48 (454)
.+||+|||||+||+.||..+.+. |.+|+|||+.+.++. -. ++| .+
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~--G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKA--GRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhc--CCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence 68999999999999999999998 999999999865421 00 111 00
Q ss_pred --------------------cccccc----cchhhhHHHHHhc-CcEEE-cceEEEEeCcc--cEEEeccCcEEEecEEE
Q psy1545 49 --------------------TKLLSD----ITVEETDANKFEG-LCTVI-VDTVAAIDPRV--NCVITEKQNRIKYKTLC 100 (454)
Q Consensus 49 --------------------~~~~~~----~~~~~~~~~~~~~-~i~~~-~~~v~~i~~~~--~~v~~~~g~~i~~d~lv 100 (454)
.+.++. .++.+.....+.+ +++++ +.++..++.+. -.+.+.+|+++.+|.+|
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~li 160 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLI 160 (408)
T ss_pred HHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEE
Confidence 000000 0111223334444 99997 45999998774 46777788899999999
Q ss_pred EecC--CCCC
Q psy1545 101 ICTG--ASPR 108 (454)
Q Consensus 101 iAtG--~~p~ 108 (454)
+||| +.|.
T Consensus 161 lAtGG~S~P~ 170 (408)
T COG2081 161 LATGGKSWPK 170 (408)
T ss_pred EecCCcCCCC
Confidence 9999 4564
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.8e-09 Score=99.36 Aligned_cols=163 Identities=15% Similarity=0.155 Sum_probs=98.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCC-CCeEEEECCCCcccccccc--------------------cc----cccccccc--
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHP-GESIGLVTPSGIVKAVTKT--------------------VP----VTKLLSDI-- 55 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~-g~~v~lie~~~~~~~~~~~--------------------~~----~~~~~~~~-- 55 (454)
++|+|||||+.|+..|.+|.+.-. ...|.|+|+.+.++.-.-| +. |..++...
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 789999999999999999998632 2349999998655311100 00 11111100
Q ss_pred ------------------c----hhhhHHHHHhc-----CcEEEcceEEEEeCcc----cEEEeccCcEEEecEEEEecC
Q psy1545 56 ------------------T----VEETDANKFEG-----LCTVIVDTVAAIDPRV----NCVITEKQNRIKYKTLCICTG 104 (454)
Q Consensus 56 ------------------~----~~~~~~~~~~~-----~i~~~~~~v~~i~~~~----~~v~~~~g~~i~~d~lviAtG 104 (454)
. +..+.+..|.+ .+.+++.+++.+.+.+ ..+...+|....+|-+|+|||
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatg 161 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATG 161 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEecc
Confidence 0 00111222222 2677777777776652 256667888899999999999
Q ss_pred CCCCCCCCC-----CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc----CCcEEEEEeCC
Q psy1545 105 ASPRKIWYS-----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS----NVDIVWVVKDK 166 (454)
Q Consensus 105 ~~p~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~ 166 (454)
..+-.++.. +....+.+......+. .+....+++|+|+|.+.++....+. ..++|++.|+.
T Consensus 162 h~~~~~~~~~~~~~~~~~~ia~~~~~~~ld-~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 162 HSAPPADPAARDLKGSPRLIADPYPANALD-GVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred CCCCCcchhhhccCCCcceeccccCCcccc-cccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 754333221 1111122222222221 1223567999999999999998886 35799999865
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.9e-09 Score=106.53 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=47.7
Q ss_pred ccCcCcccccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 272 GVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 272 G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
|..|..+ .++..+......|+|.||..+||++|++||+|+|+.......+... -.....|.-.|+.|+++++...
T Consensus 340 G~d~~~~-~i~v~p~~h~t~GGi~vd~~~~t~i~GLyAaGe~~~~g~hGanrlg-gnsl~~a~v~Gr~Ag~~aa~~~ 414 (582)
T PRK09231 340 GVDPVKE-PIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLG-SNSLAELVVFGRVAGEQAAERA 414 (582)
T ss_pred CCCCCCC-eeeeeceeeeeCCCEEECCCCccccCCEEecccccccccCCCCCcc-hhHHHHHHHHHHHHHHHHHHhh
Confidence 5555544 3333333334578999999999999999999999753333322110 0123346778889888887543
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-09 Score=104.80 Aligned_cols=75 Identities=27% Similarity=0.336 Sum_probs=52.0
Q ss_pred EEeeccCcCcccccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHH----HHHHHHHHhh
Q psy1545 268 VSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQA----KHMGTYAAKC 343 (454)
Q Consensus 268 i~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A----~~~g~~aa~~ 343 (454)
+...|..|..+ .+.-.+...--.|+|.||.+.||+.|++||+|.|+.....+++ +++.++ .-.|..+|++
T Consensus 319 c~~~GiD~~r~-~IPV~PaaHY~mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGAN-----RLASNSLLE~vV~g~~aA~~ 392 (518)
T COG0029 319 CLKAGIDPTRE-PIPVVPAAHYTMGGIAVDANGRTSIPGLYAIGEVACTGLHGAN-----RLASNSLLECLVFGKRAAED 392 (518)
T ss_pred HHHcCCCcccC-ccCccchhheecccEEECCCCcccCcccEEeeeecccccccch-----hhhhhhHHHHHHHHHHHHHH
Confidence 33456666555 3333333333469999999999999999999999987666654 455554 4557777888
Q ss_pred hcCCC
Q psy1545 344 MVGAV 348 (454)
Q Consensus 344 i~~~~ 348 (454)
|.+..
T Consensus 393 i~~~~ 397 (518)
T COG0029 393 IAGRL 397 (518)
T ss_pred hhccc
Confidence 88754
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-08 Score=105.22 Aligned_cols=38 Identities=26% Similarity=0.510 Sum_probs=33.6
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+++||+|||||.||++||.++++.+++.+|+|+|+...
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 15899999999999999999998756689999999854
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.6e-09 Score=109.16 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=33.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||.||++||..+++.+++.+|+|+||...
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~ 39 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYP 39 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence 4799999999999999999998766789999999754
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-09 Score=87.30 Aligned_cols=85 Identities=28% Similarity=0.509 Sum_probs=61.6
Q ss_pred ceeeeeeeeeecCeEEEEeecccCCcCCCC--ceEEEe----------ecCCccEEEEEE--ECCeEEEEEEEcCC--ch
Q psy1545 358 SFEMFTHMTKFFGYKVILLGLFNGQTLEND--YEILLR----------VTRGEEYIKLVM--KDGRMQGAVLIGET--EI 421 (454)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~--~~~~~~----------~~~~~~~~k~~~--~~~~i~G~~~~g~~--~~ 421 (454)
|..+|+.+ +++.+|+++.++...+ ++.... .....+|+|+++ ++++|+|+|++|+. +.
T Consensus 2 P~~vft~p------~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~ 75 (110)
T PF02852_consen 2 PTVVFTDP------EIASVGLTEEEARKQGIDYEVVTVPFKSNDRARYYPETEGFVKLIFDKKTGRILGAQIVGPNASEL 75 (110)
T ss_dssp EEEEESSS------EEEEEES-HHHHHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEEEEETTTTBEEEEEEEETTHHHH
T ss_pred CEEEECCC------ceEEEccCHHHHHhccCceeeeeecccccchhcccCCcceeeEEEEEeeccceeeeeeecCchHHH
Confidence 44555555 9999999998876444 332211 113578999999 48999999999987 36
Q ss_pred HHHHHHHHhcCCCcchhhhhc-cCCCCC
Q psy1545 422 EEMCENLILNQLDLTDIADDL-LNPNID 448 (454)
Q Consensus 422 ~~~~~~~i~~~~~~~~~~~~~-~~~~~~ 448 (454)
++.++.+|++++|++++.+.+ .+|+++
T Consensus 76 I~~~~~ai~~~~t~~~l~~~~~~~Pt~s 103 (110)
T PF02852_consen 76 INELALAIQNGLTVEDLADDIFYHPTFS 103 (110)
T ss_dssp HHHHHHHHHTTSBHHHHHTSBSSSTSTG
T ss_pred HHHHHHHHHcCCCHHHHhCCeeeCCChh
Confidence 789999999999999875544 466654
|
; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B .... |
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.6e-09 Score=103.14 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=55.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc--------cccccc-------ccccc-----------ccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK--------AVTKTV-------PVTKL-----------LSDIT 56 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~--------~~~~~~-------~~~~~-----------~~~~~ 56 (454)
|||+|||||+||+.||..+++. |.+|+|+|+++..+ +-.|.. .+... +..+.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~--g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~ 78 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEK--GARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFS 78 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHT--T--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCC
Confidence 7999999999999999999998 99999999996542 001100 00000 00000
Q ss_pred --------------------------------hhhhHHHHHhc-CcEEEc-ceEEEEeCccc---EEEeccCcEEEecEE
Q psy1545 57 --------------------------------VEETDANKFEG-LCTVIV-DTVAAIDPRVN---CVITEKQNRIKYKTL 99 (454)
Q Consensus 57 --------------------------------~~~~~~~~~~~-~i~~~~-~~v~~i~~~~~---~v~~~~g~~i~~d~l 99 (454)
+.......+.+ +++++. .+|..+..++. .|.++++..+.+|+|
T Consensus 79 ~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~v 158 (409)
T PF03486_consen 79 PEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAV 158 (409)
T ss_dssp HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEE
T ss_pred HHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEE
Confidence 00112223334 899975 49999975443 466656779999999
Q ss_pred EEecCCCC
Q psy1545 100 CICTGASP 107 (454)
Q Consensus 100 viAtG~~p 107 (454)
|||||+..
T Consensus 159 ILAtGG~S 166 (409)
T PF03486_consen 159 ILATGGKS 166 (409)
T ss_dssp EE----SS
T ss_pred EEecCCCC
Confidence 99999754
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-08 Score=102.96 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=40.4
Q ss_pred cCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 289 APDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 289 ~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
...|+|.||...||++||+||+|+|+.......+... -.....|.-.|+.|+++++..
T Consensus 331 ~t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 331 YTCGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLA-SNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred EecCCEEECCCCcccCCCEEECccccccccCcccccc-hhHHHHHHHHHHHHHHHHHhh
Confidence 3478999999999999999999999743323222100 012345777889999988753
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.1e-07 Score=90.68 Aligned_cols=115 Identities=17% Similarity=0.079 Sum_probs=75.8
Q ss_pred cccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEEEeeccC-cCcccccCCC--------Ccee--
Q psy1545 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVV-PNSNIQVHGT--------PFEL-- 288 (454)
Q Consensus 222 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi~a~G~~-p~~~~~~~~~--------~l~~-- 288 (454)
+.+.+++.|++++.++.|.++...++ ....+..+++ .++.+|.+|+|+|.. .. . +++.. ++++
T Consensus 269 L~~~~~~~Gg~il~g~~V~~i~~~~~--~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~-g-L~a~l~~i~Epif~L~v~~ 344 (419)
T TIGR03378 269 LKHRFEQLGGVMLPGDRVLRAEFEGN--RVTRIHTRNHRDIPLRADHFVLASGSFFSN-G-LVAEFDKIYEPIFGLDVLQ 344 (419)
T ss_pred HHHHHHHCCCEEEECcEEEEEEeeCC--eEEEEEecCCccceEECCEEEEccCCCcCH-H-HHhhcCceeeeccCCCcCC
Confidence 34555778999999999999886552 2344555665 479999999999998 32 1 11111 1111
Q ss_pred --c---------------CCCceEecccccc-----ccCceeecCcccccCCccccchhhccC-hHHHHHHHHHHHhhhc
Q psy1545 289 --A---------------PDCGIGVNELMQT-----SISNVYAAGDVCTPSWDLAKQWFQMRL-WTQAKHMGTYAAKCMV 345 (454)
Q Consensus 289 --~---------------~~g~i~vd~~~~t-----~~~~Iya~GD~~~~~~~~~~~~~~~~~-~~~A~~~g~~aa~~i~ 345 (454)
+ ..=++.+|+.||. ..+|+||+|-+.++..+. ..++ .-.|+..|..||++|+
T Consensus 345 ~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~-----~~gcG~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 345 LPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPI-----FEGCGSGVAVSTALHAAEQII 419 (419)
T ss_pred CcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChH-----hcCCCchhHHHHHHHHHHhhC
Confidence 0 1124789999983 389999999998875332 1111 2368888888888774
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.6e-09 Score=105.97 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=33.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||||||||.||++||..+++.+++.+|+|+|+.+.
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 4799999999999999999998756789999999865
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-08 Score=104.41 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=32.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||||||||.||++||..+++..+|.+|+|||+.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 4799999999999999999998645789999999864
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-08 Score=100.34 Aligned_cols=58 Identities=21% Similarity=0.130 Sum_probs=39.7
Q ss_pred cCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 289 APDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 289 ~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
...|+|.||...||++||+||+|.|+.......+... -.....+.-.|+.|++++...
T Consensus 329 ~t~GGi~vd~~~~t~i~gLYAaGE~a~~g~hG~nrl~-gnsl~~~lvfGr~Ag~~a~~~ 386 (433)
T PRK06175 329 YFMGGIKVDLNSKTSMKNLYAFGEVSCTGVHGANRLA-SNSLLEGLVFSKRGAEKINSE 386 (433)
T ss_pred eecCCEEECCCccccCCCeEecccccccCCCccccch-hHHHHHHHHHHHHHHHHHHHh
Confidence 3479999999999999999999999753222221100 011344677789999888653
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-08 Score=104.23 Aligned_cols=35 Identities=26% Similarity=0.494 Sum_probs=32.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||||||+|.||++||..+++. |.+|+|+||.+.
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~--G~~V~lveK~~~ 39 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASA--GFKVAVISKVFP 39 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHC--CCcEEEEEccCC
Confidence 57999999999999999999997 899999999754
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.5e-08 Score=98.03 Aligned_cols=150 Identities=13% Similarity=0.054 Sum_probs=86.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc-cc-ccc---------c-----------ccccccc-------
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK-AV-TKT---------V-----------PVTKLLS------- 53 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~-~~-~~~---------~-----------~~~~~~~------- 53 (454)
++|+|||||++|+++|.+|.+.....+|+|+|++..++ +. +.. + .+..+..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 58999999999999999999875567999999975443 11 110 0 0000000
Q ss_pred -----------c--c---chh----hhHHH----HHhc-C--cEEE-cceEEEEeCccc--EEEecc-CcEEEecEEEEe
Q psy1545 54 -----------D--I---TVE----ETDAN----KFEG-L--CTVI-VDTVAAIDPRVN--CVITEK-QNRIKYKTLCIC 102 (454)
Q Consensus 54 -----------~--~---~~~----~~~~~----~~~~-~--i~~~-~~~v~~i~~~~~--~v~~~~-g~~i~~d~lviA 102 (454)
+ + .+. ...++ .+.. + +.++ ..+|+.++.... .+.+.+ +..+.+|+||+|
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLA 161 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIA 161 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEEC
Confidence 0 0 000 11111 1122 4 5655 448999876544 444434 467999999999
Q ss_pred cCCCCCCCCCCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc
Q psy1545 103 TGASPRKIWYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS 155 (454)
Q Consensus 103 tG~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~ 155 (454)
||..+..+. ......+.+..+...+ ..+ .+.+|+|+|.|.++++.+..|.
T Consensus 162 tGh~~p~~~-~~~~~yi~~pw~~~~~-~~i-~~~~V~I~GtGLt~iD~v~~Lt 211 (534)
T PRK09897 162 TGHVWPDEE-EATRTYFPSPWSGLME-AKV-DACNVGIMGTSLSGLDAAMAVA 211 (534)
T ss_pred CCCCCCCCC-hhhccccCCCCcchhh-cCC-CCCeEEEECCCHHHHHHHHHHH
Confidence 997432111 1111111222222211 122 3689999999999999997764
|
|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.1e-08 Score=101.76 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||+|||+|.||++||..+++. |.+|+|+|+.+..
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~--G~~VilleK~~~~ 51 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRA--GRRVLVVTKAALD 51 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHc--CCeEEEEEccCCC
Confidence 57999999999999999999997 8899999998654
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.3e-08 Score=97.77 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=69.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccc----c-------------cc-----------cc-
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVP----V-------------TK-----------LL- 52 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~----~-------------~~-----------~~- 52 (454)
.+||+|||||+||+++|..|++. |.+|+|+|+.+......++.. + .. ..
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~--Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~ 105 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEA--GLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLD 105 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHC--CCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcccc
Confidence 37999999999999999999997 999999999764221100000 0 00 00
Q ss_pred ccc------chhhhHHHHHhc-CcEEEcceEEEEeCccc--EEEeccCcEEEecEEEEecCCCCC
Q psy1545 53 SDI------TVEETDANKFEG-LCTVIVDTVAAIDPRVN--CVITEKQNRIKYKTLCICTGASPR 108 (454)
Q Consensus 53 ~~~------~~~~~~~~~~~~-~i~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lviAtG~~p~ 108 (454)
..+ .+.....+...+ +++++.++|+.++..+. .|++++|.++++|.||.|+|....
T Consensus 106 ~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 106 RPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred CcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 000 011112222333 89988788888875443 567778889999999999998654
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-07 Score=97.47 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=32.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCC-CCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHP-GESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~-g~~v~lie~~~~~ 39 (454)
++||+|||||.||++||..+++.++ +.+|+|+|+....
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~ 43 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPM 43 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCC
Confidence 5799999999999999999999821 1799999997653
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-08 Score=104.39 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
||||||||.||++||..+++. |.+|+|+|+.+.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~--G~~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKA--GLNTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHC--CCcEEEEeccCC
Confidence 799999999999999999998 899999999764
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.9e-08 Score=93.33 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=45.5
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcE-EecCEEEEeeccCcCcccccCCCCcee
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHT-HACDIVVSAIGVVPNSNIQVHGTPFEL 288 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~-~~~D~vi~a~G~~p~~~~~~~~~~l~~ 288 (454)
.++|+++++|++|+.++..++ +...+.+++|++ ++|+.||.|.|..... ++...|+..
T Consensus 164 ~~~g~~i~ln~eV~~i~~~~d--g~~~~~~~~g~~~~~ak~Vin~AGl~Ad~--la~~~g~~~ 222 (429)
T COG0579 164 QANGVELRLNTEVTGIEKQSD--GVFVLNTSNGEETLEAKFVINAAGLYADP--LAQMAGIPE 222 (429)
T ss_pred HHcCCEEEecCeeeEEEEeCC--ceEEEEecCCcEEEEeeEEEECCchhHHH--HHHHhCCCc
Confidence 447999999999999998774 256677888866 9999999999997654 556555443
|
|
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1e-07 Score=87.10 Aligned_cols=119 Identities=16% Similarity=0.026 Sum_probs=73.6
Q ss_pred cccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCc--EEecCEEEEeeccCcCcc----------cccCCCCceec
Q psy1545 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGH--THACDIVVSAIGVVPNSN----------IQVHGTPFELA 289 (454)
Q Consensus 222 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~--~~~~D~vi~a~G~~p~~~----------~~~~~~~l~~~ 289 (454)
+...+++.|..+.++-.|.+.+-.+ +++..+.+.+.. .+.+|..|+|+|.--... +++... +.-+
T Consensus 264 L~~~f~~~Gg~~m~Gd~V~~a~~~~--~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ld-i~~~ 340 (421)
T COG3075 264 LQRQFEQLGGLWMPGDEVKKATCKG--GRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLD-ILQT 340 (421)
T ss_pred HHHHHHHcCceEecCCceeeeeeeC--CeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhhcc-cccC
Confidence 4566688899999999999888765 345666667764 466899999998754322 011110 0000
Q ss_pred C-----------------CCceEecccccc-----ccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 290 P-----------------DCGIGVNELMQT-----SISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 290 ~-----------------~g~i~vd~~~~t-----~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
. .=++.+|+.+|. ..+|+||||-+.++..+.... --.-.|+..|-.||..|+.+
T Consensus 341 ~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~eg----cGsGVaivta~~aa~qi~~~ 416 (421)
T COG3075 341 ADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEG----CGSGVAIVTALHAAEQIAER 416 (421)
T ss_pred cchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhc----CCcchHHHHHHHHHHHHHHH
Confidence 0 113667777774 358999999998875332100 01234667777777777654
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-07 Score=99.10 Aligned_cols=34 Identities=26% Similarity=0.509 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++||+|||||.||++||..+++. |.+|+|+|+..
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~--G~~VilieK~~ 68 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGEL--GYNVKVFCYQD 68 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHc--CCcEEEEecCC
Confidence 47999999999999999999997 88999999754
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.7e-08 Score=97.58 Aligned_cols=39 Identities=31% Similarity=0.510 Sum_probs=35.6
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
|++||+|||||.+|+++|++|+++.++.+|+|+|+.+..
T Consensus 1 ~~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~ 39 (393)
T PRK11728 1 AMYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGP 39 (393)
T ss_pred CCccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcc
Confidence 789999999999999999999998678999999998643
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.9e-08 Score=106.11 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||.||++||..+++. |.+|+|+|+.+.
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~--G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEH--GANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHC--CCeEEEEecccc
Confidence 47999999999999999999987 899999999864
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-07 Score=96.25 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=40.9
Q ss_pred cCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 289 APDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 289 ~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
...|+|.||...||++|++||+|+|+.......+... -.....|.-.|+.|+++++..
T Consensus 351 ~t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-gnsl~~~~vfG~~Ag~~aa~~ 408 (536)
T PRK09077 351 YTCGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMA-SNSLLECLVYGRSAAEDILSR 408 (536)
T ss_pred EecCCeeECCCCccccCCEEecccccccccCCCccch-hhhHHHHHHHHHHHHHHHHHh
Confidence 3478999999999999999999999753333322110 012345777899999988764
|
|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.5e-07 Score=93.34 Aligned_cols=57 Identities=23% Similarity=0.191 Sum_probs=38.9
Q ss_pred CCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 290 PDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 290 ~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
..|+|.||...||++|++||+|+|+.......+... -.....+.-.|+.|++++...
T Consensus 331 ~~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 331 LMGGVKTNLDGETSIPGLYAIGEVACTGVHGANRLA-SNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred EcCCEEECCCCcccCCCeEEcccccccccCCCcccc-hHHHHHHHHHHHHHHHHHHhh
Confidence 368899999999999999999999753322222100 012344666788888888654
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-07 Score=94.08 Aligned_cols=102 Identities=19% Similarity=0.210 Sum_probs=66.8
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccc----c-------------cccc----cc--------
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVP----V-------------TKLL----SD-------- 54 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~----~-------------~~~~----~~-------- 54 (454)
||+|||||+||+++|..|++. |.+|+|||+++..+....+.. + .... ..
T Consensus 1 DviIiGaG~AGl~~A~~la~~--g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP--GLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTA 78 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCc
Confidence 799999999999999999987 999999998864432111100 0 0000 00
Q ss_pred c------chhhhHHHHHhc-CcEEEcceEEEEeCc-c--cEEEeccCcEEEecEEEEecCCCC
Q psy1545 55 I------TVEETDANKFEG-LCTVIVDTVAAIDPR-V--NCVITEKQNRIKYKTLCICTGASP 107 (454)
Q Consensus 55 ~------~~~~~~~~~~~~-~i~~~~~~v~~i~~~-~--~~v~~~~g~~i~~d~lviAtG~~p 107 (454)
+ .+.+...+...+ +++++.+++..+..+ . ..|++.+|.+++++.||.|+|..+
T Consensus 79 ~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 79 YGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred eeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0 001111222233 788887788887654 2 356666777899999999999865
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-07 Score=89.77 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=32.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
+||+|||||++|+++|..|++. |.+|+|+|+.+..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~--g~~v~vie~~~~~ 35 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK--GLRVLLLEKKSFP 35 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCC
Confidence 6999999999999999999998 8999999998754
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-08 Score=104.14 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=35.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
++||||||+|++|++||..+++. |.+|+|+|+.+..++.
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~--G~~v~llEk~~~~gG~ 47 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKL--GLDVVVLEKEPVFGGT 47 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc--CCeEEEEecCCCCCCc
Confidence 57999999999999999999998 8899999999876543
|
|
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.68 E-value=3e-07 Score=95.04 Aligned_cols=33 Identities=30% Similarity=0.465 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHh----hcCCCCeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLA----FLHPGESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~----~~~~g~~v~lie~~~~ 38 (454)
||||||||.||++||..++ +. |.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~--G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKK--GLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhC--CCeEEEEEccCC
Confidence 7999999999999999998 55 889999999764
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-07 Score=86.82 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=33.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
++||+|||||+||++||+.|++. |.+|+|+|+.+..+
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~--G~~V~liEk~~~~G 61 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKA--GLKVAVFERKLSFG 61 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCC
Confidence 58999999999999999999997 99999999987654
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.6e-07 Score=90.75 Aligned_cols=104 Identities=21% Similarity=0.186 Sum_probs=68.2
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc----cccc--ccc-------cccc--------------c--
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV----TKTV--PVT-------KLLS--------------D-- 54 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~----~~~~--~~~-------~~~~--------------~-- 54 (454)
||||||||+||+++|..|++..++.+|+|||+++..... |... ... ..+. .
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 899999999999999999555569999999987654111 1110 000 0000 0
Q ss_pred c------chhhhHHHHHhc-CcEEEcceEEEEeCccc--EEEeccCcEEEecEEEEecCCCC
Q psy1545 55 I------TVEETDANKFEG-LCTVIVDTVAAIDPRVN--CVITEKQNRIKYKTLCICTGASP 107 (454)
Q Consensus 55 ~------~~~~~~~~~~~~-~i~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lviAtG~~p 107 (454)
+ ++.....+.+.. ++.++.++|+.++.... .|.+.+|.+++++.||-|+|..+
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence 0 000111222222 67777889999987765 66788899999999999999543
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-07 Score=93.03 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=35.0
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
|+|||+||||||||++||+.|++. |.+|+|+|+.+.++
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~--G~~VlvlEk~~~~G 39 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA--GLDVLVLEKGSEPG 39 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc--CCeEEEEecCCCCC
Confidence 589999999999999999999998 79999999987654
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.9e-07 Score=91.11 Aligned_cols=37 Identities=32% Similarity=0.596 Sum_probs=34.1
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
|++||+|||||++|+++|..|++. |.+|+|+|+.+..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~--G~~v~v~E~~~~~ 40 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQS--GLRVALLAPRAPP 40 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhC--CCeEEEEecCCCc
Confidence 678999999999999999999998 8999999998654
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.4e-07 Score=89.32 Aligned_cols=100 Identities=20% Similarity=0.285 Sum_probs=61.7
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEE-CCCCccccccccccc----------------------------------
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLV-TPSGIVKAVTKTVPV---------------------------------- 48 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~li-e~~~~~~~~~~~~~~---------------------------------- 48 (454)
||+|||||.||+.||+.+++. |.+|+|+ .+.+.+......+.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~--G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN 78 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARM--GAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLN 78 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--T--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccc
Confidence 799999999999999999999 9999999 333222111100000
Q ss_pred -cccc----c----c-cchhhhHHHHHhc--CcEEEcceEEEEeCccc---EEEeccCcEEEecEEEEecCC
Q psy1545 49 -TKLL----S----D-ITVEETDANKFEG--LCTVIVDTVAAIDPRVN---CVITEKQNRIKYKTLCICTGA 105 (454)
Q Consensus 49 -~~~~----~----~-~~~~~~~~~~~~~--~i~~~~~~v~~i~~~~~---~v~~~~g~~i~~d~lviAtG~ 105 (454)
++.. . + ..+.....+.+.. ++++++++|+.+..++. -|.+.+|..+.+|.+|+|||.
T Consensus 79 ~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 79 RSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred ccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 0000 0 0 0011122233334 89999999999976554 356778899999999999997
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.8e-07 Score=93.67 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=66.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC-cccccccccc---------------cccc----c---------
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG-IVKAVTKTVP---------------VTKL----L--------- 52 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~-~~~~~~~~~~---------------~~~~----~--------- 52 (454)
+|||||||||+||+.||..+++. |.+|+|+|+.. .++.....+. +... .
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~--G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ 81 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARM--GAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRM 81 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHc--CCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceee
Confidence 58999999999999999999998 99999999873 2221110000 0000 0
Q ss_pred ------c-------ccc---hhhhHHHHHhc--CcEEEcceEEEEeCccc---EEEeccCcEEEecEEEEecCCC
Q psy1545 53 ------S-------DIT---VEETDANKFEG--LCTVIVDTVAAIDPRVN---CVITEKQNRIKYKTLCICTGAS 106 (454)
Q Consensus 53 ------~-------~~~---~~~~~~~~~~~--~i~~~~~~v~~i~~~~~---~v~~~~g~~i~~d~lviAtG~~ 106 (454)
+ ..+ +.....+.+.. +++++.++|..+..++. .|.+.+|..+.++.+|+|||..
T Consensus 82 ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 82 LNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred cccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 0 000 00111122233 78888888888754433 3566788899999999999974
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.5e-07 Score=97.76 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=30.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||.||++||.++++ +.+|+|+|+.+.
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~---~~~VilleK~~~ 38 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGP---RARTAVLTKLYP 38 (583)
T ss_pred eccEEEECccHHHHHHHHHHHh---CCCEEEEeCCCC
Confidence 4799999999999999999986 379999999754
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.4e-07 Score=92.66 Aligned_cols=35 Identities=29% Similarity=0.499 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
.+||||||+|.||++||.+++ . |.+|+|||+.+..
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~-~--G~~V~lieK~~~~ 43 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLP-S--HLRVGLITKDTLK 43 (553)
T ss_pred cCCEEEECccHHHHHHHHHhh-c--CCCEEEEEccCCC
Confidence 479999999999999999996 3 7899999998654
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.9e-07 Score=91.79 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=67.3
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc--c----ccc------------------------ccccc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA--V----TKT------------------------VPVTK 50 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~--~----~~~------------------------~~~~~ 50 (454)
-++||+||||||+|+++|..|++. |.+|+|+|+.+.... . .+. ..+..
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~--G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~ 79 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALA--GVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAA 79 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeee
Confidence 058999999999999999999998 999999998753210 0 000 00000
Q ss_pred ---cccc------c--chhh-----hHHHHHhc-CcEEEcc-eEEEEeCccc--EEEeccCcEEEecEEEEecCCCCC
Q psy1545 51 ---LLSD------I--TVEE-----TDANKFEG-LCTVIVD-TVAAIDPRVN--CVITEKQNRIKYKTLCICTGASPR 108 (454)
Q Consensus 51 ---~~~~------~--~~~~-----~~~~~~~~-~i~~~~~-~v~~i~~~~~--~v~~~~g~~i~~d~lviAtG~~p~ 108 (454)
.... + .+.+ ...+.+.+ +++++.+ +++.+..+.. .+++.+|+++++|+||.|.|.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 80 TRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred EecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 0000 0 0011 11222333 7888755 8888765443 455566778999999999998653
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.7e-07 Score=90.17 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=33.0
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
|.+||+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~--G~~v~viE~~~ 35 (405)
T PRK05714 1 MRADLLIVGAGMVGSALALALQGS--GLEVLLLDGGP 35 (405)
T ss_pred CCccEEEECccHHHHHHHHHHhcC--CCEEEEEcCCC
Confidence 678999999999999999999998 89999999876
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.5e-07 Score=90.22 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=32.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+||+|||||++|+++|..|++.+++.+|+|+|+.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 899999999999999999999855699999999753
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.8e-07 Score=89.09 Aligned_cols=105 Identities=22% Similarity=0.208 Sum_probs=67.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc---c------------------------ccc---c---
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT---K------------------------TVP---V--- 48 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~---~------------------------~~~---~--- 48 (454)
..||+|||||++|+++|..|++. |.+|+|+|+.+...... . ... +
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~--g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA--GIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPD 81 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCC
Confidence 47899999999999999999998 89999999875421000 0 000 0
Q ss_pred cccc-------------c-cc-----chhhhHHHHHhc-CcEEEcc-eEEEEeCccc--EEEeccCcEEEecEEEEecCC
Q psy1545 49 TKLL-------------S-DI-----TVEETDANKFEG-LCTVIVD-TVAAIDPRVN--CVITEKQNRIKYKTLCICTGA 105 (454)
Q Consensus 49 ~~~~-------------~-~~-----~~~~~~~~~~~~-~i~~~~~-~v~~i~~~~~--~v~~~~g~~i~~d~lviAtG~ 105 (454)
...+ . .. .+.....+.+.+ +++++.+ +++.++.+.. .+.+.+|+++.+|.||.|+|.
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~ 161 (375)
T PRK06847 82 GTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGL 161 (375)
T ss_pred CCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCC
Confidence 0000 0 00 011112222333 7888755 8888765443 456668889999999999997
Q ss_pred CCC
Q psy1545 106 SPR 108 (454)
Q Consensus 106 ~p~ 108 (454)
...
T Consensus 162 ~s~ 164 (375)
T PRK06847 162 YSK 164 (375)
T ss_pred Ccc
Confidence 643
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.9e-07 Score=90.33 Aligned_cols=36 Identities=28% Similarity=0.426 Sum_probs=33.5
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
|++||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~--G~~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGS--GLKVTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC--CCcEEEEeCCCc
Confidence 579999999999999999999998 999999999764
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.9e-07 Score=90.51 Aligned_cols=96 Identities=17% Similarity=0.288 Sum_probs=70.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. .+ ..+......+.+.+ +++++.+ ++..++
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~--g~~Vtli~~~~~~l~-----~~-----~~~~~~~~~~~l~~~gi~i~~~~~v~~i~ 238 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASL--GSKVTVIEMLDRILP-----GE-----DAEVSKVVAKALKKKGVKILTNTKVTAVE 238 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCcEEEEEcCCCCCC-----CC-----CHHHHHHHHHHHHHcCCEEEeCCEEEEEE
Confidence 4799999999999999999998 889999999875421 11 11223334455656 9999865 888887
Q ss_pred Cccc--EEEeccC--cEEEecEEEEecCCCCCCC
Q psy1545 81 PRVN--CVITEKQ--NRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~~--~v~~~~g--~~i~~d~lviAtG~~p~~~ 110 (454)
.... .+.+.+| .++.+|.+++|+|.+|...
T Consensus 239 ~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 239 KNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred EeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 5443 3444455 4799999999999999876
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4e-07 Score=86.20 Aligned_cols=137 Identities=16% Similarity=0.251 Sum_probs=89.1
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccccc----------C-----------CcchhhhHHHhhccCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFL----------D-----------PGAAEFFQDSINKTNTA 191 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~----------d-----------~~~~~~~~~~l~~~~~~ 191 (454)
-..++|||||+.|+-+|..+. |.+|.++++.+.+-.+++ + |+-..++...|.+.+..
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~ 82 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE 82 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence 357999999999999998886 999999998776543321 1 11112222222221222
Q ss_pred ChhhhhhhcccccCCCCCCCCCCc-cccc--cc-cccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEE
Q psy1545 192 KPETIFKRMRYNTGGEKGPSLGPD-WHTQ--VN-LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIV 267 (454)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~--~~-~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~v 267 (454)
+-.-...+..+...++-.+.+-|+ .... +. +...+++.||+++++++|.+++.+++ ...+.+++|+++.||.+
T Consensus 83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~---~f~l~t~~g~~i~~d~l 159 (408)
T COG2081 83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS---GFRLDTSSGETVKCDSL 159 (408)
T ss_pred HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc---eEEEEcCCCCEEEccEE
Confidence 222233344444444433333333 3322 22 45667889999999999999998763 68899999989999999
Q ss_pred EEeeccC
Q psy1545 268 VSAIGVV 274 (454)
Q Consensus 268 i~a~G~~ 274 (454)
|+|+|-.
T Consensus 160 ilAtGG~ 166 (408)
T COG2081 160 ILATGGK 166 (408)
T ss_pred EEecCCc
Confidence 9999943
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.6e-07 Score=91.40 Aligned_cols=36 Identities=28% Similarity=0.463 Sum_probs=33.6
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
|++||+||||||+|+++|..|++. |.+|+|||+.+.
T Consensus 1 ~~~dVlIVGaGpaGl~lA~~L~~~--G~~v~viEr~~~ 36 (493)
T PRK08244 1 MKYEVIIIGGGPVGLMLASELALA--GVKTCVIERLKE 36 (493)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCC
Confidence 789999999999999999999998 999999999754
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.3e-07 Score=87.96 Aligned_cols=35 Identities=34% Similarity=0.538 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||++|+++|..|++. |.+|+|||+.+.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~--G~~v~liE~~~~ 40 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADA--GLSVALVEGREP 40 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcC--CCEEEEEeCCCC
Confidence 48999999999999999999998 999999999753
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.1e-07 Score=91.36 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=32.5
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
=++||+||||||+|+++|..|++. |.+|+|||+.+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~--Gi~v~viE~~~~ 37 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARR--GVSFRLIEKAPE 37 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCC
Confidence 058999999999999999999998 999999999753
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-06 Score=87.18 Aligned_cols=97 Identities=16% Similarity=0.237 Sum_probs=70.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||++|+.+|..+++. +.+|+++++.+.+.. .. +.+......+.+.+ +++++.+ +++.++
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~--g~~Vtli~~~~~~l~-----~~-----~~~~~~~~~~~l~~~GI~i~~~~~V~~i~ 225 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKL--GSKVTVLDAASTILP-----RE-----EPSVAALAKQYMEEDGITFLLNAHTTEVK 225 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCccCC-----CC-----CHHHHHHHHHHHHHcCCEEEcCCEEEEEE
Confidence 4799999999999999999997 889999999875421 00 11222333445555 9999865 888887
Q ss_pred CcccEEE-eccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVNCVI-TEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~~v~-~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
.+...+. ..+++++.||.+++|+|.+|....
T Consensus 226 ~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~ 257 (438)
T PRK07251 226 NDGDQVLVVTEDETYRFDALLYATGRKPNTEP 257 (438)
T ss_pred ecCCEEEEEECCeEEEcCEEEEeeCCCCCccc
Confidence 6544332 235678999999999999988654
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.8e-07 Score=88.58 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=33.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||+||||||||++||+.|++. |.+|+|+|+.+..
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~--G~~V~llEr~~~~ 40 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLARE--GAQVLVIERGNSA 40 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhC--CCeEEEEEcCCCC
Confidence 48999999999999999999998 9999999998654
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.2e-07 Score=91.02 Aligned_cols=104 Identities=20% Similarity=0.238 Sum_probs=66.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc---ccccc--ccc-----------------cc----c-cc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA---VTKTV--PVT-----------------KL----L-SD 54 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~---~~~~~--~~~-----------------~~----~-~~ 54 (454)
.+||+||||||||+++|..|++. |++|+|||+...... .|... .+. .. . ..
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~--Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~ 185 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRA 185 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhC--CCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCc
Confidence 37999999999999999999998 999999998632211 11000 000 00 0 00
Q ss_pred cc-hh-----hhHHHHHhc-CcEEEcceEEEEeCccc--E-EEeccCcEEEecEEEEecCCCC
Q psy1545 55 IT-VE-----ETDANKFEG-LCTVIVDTVAAIDPRVN--C-VITEKQNRIKYKTLCICTGASP 107 (454)
Q Consensus 55 ~~-~~-----~~~~~~~~~-~i~~~~~~v~~i~~~~~--~-v~~~~g~~i~~d~lviAtG~~p 107 (454)
+. +. ....+...+ +++++.++|+.+..+.. . +.+.+|.++.++.||.|+|...
T Consensus 186 Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 186 YGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred ccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 00 11 112222333 88887778888864332 2 3456778899999999999865
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.50 E-value=1e-06 Score=81.14 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=34.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
.+||+|||||++|++||+.|++. +.+|+|+|+++.++
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~--G~~V~vlEk~~~~G 57 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKN--GLKVCVLERSLAFG 57 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCC
Confidence 58999999999999999999998 89999999997654
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.5e-07 Score=84.35 Aligned_cols=111 Identities=15% Similarity=0.165 Sum_probs=70.0
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCC-CCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP-SLG 213 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 213 (454)
+++|||||+.|+++|..|. |.+|+++++.+. -..+.... .+.. ...+.. ..+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-gg~~~~~~-------~~~~-----------------~~~~~~~~~~ 56 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-GGQLTTTT-------EVEN-----------------YPGFPEGISG 56 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-Ccceeecc-------cccc-----------------cCCCCCCCCh
Confidence 5899999999999999986 999999997651 10000000 0000 000000 000
Q ss_pred CccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 214 PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 214 ~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
.++.. .+.+.+++.|+++++ +.+.+++..++ .+.+.++++.++.+|.+|+|+|.+|+..
T Consensus 57 ~~~~~--~l~~~~~~~gv~~~~-~~v~~v~~~~~---~~~v~~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 57 PELME--KMKEQAVKFGAEIIY-EEVIKVDLSDR---PFKVKTGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred HHHHH--HHHHHHHHcCCeEEE-EEEEEEEecCC---eeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence 01111 112233457999998 78999887653 4667778888999999999999998754
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.8e-07 Score=87.50 Aligned_cols=35 Identities=23% Similarity=0.545 Sum_probs=31.7
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
-.+||+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 2 ~~~dv~IvGgG~aGl~~A~~L~~~--G~~v~l~E~~~ 36 (384)
T PRK08849 2 NKYDIAVVGGGMVGAATALGFAKQ--GRSVAVIEGGE 36 (384)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC--CCcEEEEcCCC
Confidence 047999999999999999999998 99999999864
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.7e-07 Score=87.68 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=32.7
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+++||+||||||+|+++|..|++. |.+|+|+|+.+.
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~--G~~v~viE~~~~ 37 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGS--GLRVAVLEQRVP 37 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhC--CCEEEEEeCCCC
Confidence 158999999999999999999998 999999998764
|
|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.8e-07 Score=96.46 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=34.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
++||||||+|++|++||..+++. |.+|+|||+.+..++
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~--G~~v~llEk~~~~gG 44 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHR--GLSTVVVEKAPHYGG 44 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCCCCc
Confidence 47999999999999999999998 999999999876553
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.9e-07 Score=90.85 Aligned_cols=57 Identities=23% Similarity=0.256 Sum_probs=39.0
Q ss_pred CCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 290 PDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 290 ~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
..|+|.||...||++|++||+|+|+.......+... -.....+.-.|+.|+++++..
T Consensus 340 t~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanrl~-gnsl~~~~v~G~~ag~~aa~~ 396 (513)
T PRK07512 340 HMGGIAVDADGRSSLPGLWAAGEVASTGLHGANRLA-SNSLLEAVVFAARAAEDIAGT 396 (513)
T ss_pred EcCCEEECCCCccccCCEEecccccccCCCcccchH-HHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999743333322110 011234567788888888754
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-06 Score=87.01 Aligned_cols=35 Identities=37% Similarity=0.543 Sum_probs=32.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||++|+++|..|++. |.+|+|||+.+.
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~--G~~v~liE~~~~ 41 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARA--GASVALVAPEPP 41 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcC--CCeEEEEeCCCC
Confidence 47999999999999999999998 899999999754
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-06 Score=75.00 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=63.6
Q ss_pred EEECCCHHHHHHHHHHhhc---CCCCeEEEECCCCcccc-ccccc-----------------------cccccccccc--
Q psy1545 6 LIIGGGIAGVSCVEGLAFL---HPGESIGLVTPSGIVKA-VTKTV-----------------------PVTKLLSDIT-- 56 (454)
Q Consensus 6 vIIGgG~aGl~aA~~l~~~---~~g~~v~lie~~~~~~~-~~~~~-----------------------~~~~~~~~~~-- 56 (454)
+|||||++|++++.+|.+. .+..+|+|+|+++...+ .+... .|..++....
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999999987 35779999999766412 22110 0000000000
Q ss_pred ---------h-----hhhHH----HHHh---c-C--cEEEcceEEEEeCccc--EEEeccCcEEEecEEEEecCC
Q psy1545 57 ---------V-----EETDA----NKFE---G-L--CTVIVDTVAAIDPRVN--CVITEKQNRIKYKTLCICTGA 105 (454)
Q Consensus 57 ---------~-----~~~~~----~~~~---~-~--i~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lviAtG~ 105 (454)
+ .-+++ +.+. . + +.++..+|+.+++... .+.+.+|..+.+|+||+|||.
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 0 00111 1111 1 3 4556789999876543 577788999999999999995
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-06 Score=87.99 Aligned_cols=35 Identities=31% Similarity=0.329 Sum_probs=32.6
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
|++||+||||||||++||..|++. |.+|+|+|+..
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~--G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKG--GIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC--CCcEEEEecCC
Confidence 468999999999999999999998 99999999874
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.7e-06 Score=81.85 Aligned_cols=47 Identities=17% Similarity=0.311 Sum_probs=40.2
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
.|+++++++++++++.+++ .+.+.+++|+++++|+||-|-|.+....
T Consensus 117 ~~v~i~~~~~v~~i~~~~~---~v~v~~~dg~~~~adlvIgADG~~S~vR 163 (372)
T PRK05868 117 PSVEYLFDDSISTLQDDGD---SVRVTFERAAAREFDLVIGADGLHSNVR 163 (372)
T ss_pred CCcEEEeCCEEEEEEecCC---eEEEEECCCCeEEeCEEEECCCCCchHH
Confidence 6899999999999986543 5778899999999999999999887654
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-06 Score=86.36 Aligned_cols=104 Identities=16% Similarity=0.134 Sum_probs=67.7
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC-ccc-------------------cc-cccc-----c-------
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG-IVK-------------------AV-TKTV-----P------- 47 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~-~~~-------------------~~-~~~~-----~------- 47 (454)
|.+||+|||||++|+++|..|++. |.+|+|||+.+ ... +. .... .
T Consensus 1 ~~~dV~IvGaG~aGl~lA~~L~~~--G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~ 78 (387)
T COG0654 1 KMLDVAIVGAGPAGLALALALARA--GLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVD 78 (387)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhC--CCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEe
Confidence 468999999999999999999999 89999999972 210 00 0000 0
Q ss_pred ccc------ccc------------ccchhhhHHHHHhc--CcEEEcc-eEEEEeCcc--cEEEec-cCcEEEecEEEEec
Q psy1545 48 VTK------LLS------------DITVEETDANKFEG--LCTVIVD-TVAAIDPRV--NCVITE-KQNRIKYKTLCICT 103 (454)
Q Consensus 48 ~~~------~~~------------~~~~~~~~~~~~~~--~i~~~~~-~v~~i~~~~--~~v~~~-~g~~i~~d~lviAt 103 (454)
... ... ..++.....+.... +++++.+ +++.++.+. ..+++. +|+++.+|.||-|-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgAD 158 (387)
T COG0654 79 DGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGAD 158 (387)
T ss_pred cCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECC
Confidence 000 000 00011122233333 5898865 888887654 356677 88899999999999
Q ss_pred CCC
Q psy1545 104 GAS 106 (454)
Q Consensus 104 G~~ 106 (454)
|.+
T Consensus 159 G~~ 161 (387)
T COG0654 159 GAN 161 (387)
T ss_pred CCc
Confidence 963
|
|
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.45 E-value=8e-07 Score=90.68 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||||||||.||+.||..+++. +.+|+|+|+.+..
T Consensus 6 ~~DvvVIG~G~AGl~AAi~aa~~--g~~V~l~~K~~~~ 41 (562)
T COG1053 6 EFDVVVIGGGGAGLRAAIEAAEA--GLKVALLSKAPPK 41 (562)
T ss_pred cCCEEEECCcHHHHHHHHHHHhc--CCcEEEEEccccC
Confidence 58999999999999999999998 7999999997543
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.9e-07 Score=89.93 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=32.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
+||+|||||.+|+++|++|++. |.+|+|+|+.+..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~--g~~V~l~e~~~~~ 35 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKH--GKKTLLLEQFDLP 35 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCC
Confidence 5999999999999999999998 8899999997653
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.44 E-value=1e-06 Score=85.81 Aligned_cols=33 Identities=42% Similarity=0.576 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
||+|||||++|+++|++|++. |.+|+|+|++..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~--G~~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR--GHSVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT--TSEEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCeEEEEeeccc
Confidence 799999999999999999997 999999999843
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.9e-06 Score=84.28 Aligned_cols=102 Identities=19% Similarity=0.227 Sum_probs=64.2
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc--cccc--cccc----cc--------ccc------------
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV--TKTV--PVTK----LL--------SDI------------ 55 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~--~~~~--~~~~----~~--------~~~------------ 55 (454)
||+|||||+||+++|..|++..++.+|+++|+.+..+.- |.+. .... .+ ...
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 799999999999999999986568999999998744321 1110 0000 00 000
Q ss_pred ----chh-hhHHHHHhc--CcEEE-cceEEEEeCcccEEEeccCcEEEecEEEEecCCCC
Q psy1545 56 ----TVE-ETDANKFEG--LCTVI-VDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASP 107 (454)
Q Consensus 56 ----~~~-~~~~~~~~~--~i~~~-~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p 107 (454)
.+. ....+.+.+ +..++ ..+|..++++. |++.+|+++++|.||-|.|.++
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~--v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADG--VDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCE--EEECCCCEEEeeEEEECCCCCC
Confidence 000 111222222 22233 55888886654 6667888999999999999764
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=98.41 E-value=5e-06 Score=84.10 Aligned_cols=36 Identities=28% Similarity=0.272 Sum_probs=33.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+||+|||||.+|+++|++|++..|+.+|+|+|+++.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~ 36 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA 36 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 599999999999999999999878999999999763
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-06 Score=85.33 Aligned_cols=32 Identities=31% Similarity=0.484 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS 36 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~ 36 (454)
|||+||||||||+++|+.|++. |.+|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~--G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA--GIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCcEEEEECC
Confidence 6999999999999999999998 9999999997
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.9e-06 Score=85.71 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS 36 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~ 36 (454)
.+||+|||||++|+++|..|++. |.+|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~--G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKES--DLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhC--CCEEEEEcCC
Confidence 47999999999999999999998 9999999985
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-06 Score=85.99 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
+.||+|||||++|+++|..|++. |.+|+|+|+.+..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~--g~~v~v~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ--GIKVKLLEQAAEI 39 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC--CCcEEEEeeCccc
Confidence 57999999999999999999998 9999999998643
|
|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-06 Score=88.64 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=33.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||||||||..|+++|+.|++..+..+|+|+|+.+.
T Consensus 45 ~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 45 VYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred cccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 4899999999999999999999856689999999864
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.3e-06 Score=86.85 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+||+||||||+|+++|..|++. |.+|+|||+.+.
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~--Gi~V~llEr~~~ 39 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLC--GLNTVIVDKSDG 39 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHc--CCCEEEEeCCCc
Confidence 47999999999999999999998 999999999854
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.3e-06 Score=85.56 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=33.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||+||||||||++||+.|++. |.+|+|||+.+.+
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~--G~~VlliEr~~~~ 40 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARA--GLDVLVIERGDSA 40 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhC--CCeEEEEecCCCC
Confidence 38999999999999999999998 9999999998654
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.1e-06 Score=64.11 Aligned_cols=76 Identities=24% Similarity=0.284 Sum_probs=55.8
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEeC
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAIDP 81 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~~ 81 (454)
+++|||||+.|+-+|..|++. +.+|+||++.+.+. +. .+.+......+.+.+ +++++.+ .+..++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~--g~~vtli~~~~~~~-----~~-----~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 68 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL--GKEVTLIERSDRLL-----PG-----FDPDAAKILEEYLRKRGVEVHTNTKVKEIEK 68 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--TSEEEEEESSSSSS-----TT-----SSHHHHHHHHHHHHHTTEEEEESEEEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHh--CcEEEEEeccchhh-----hh-----cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence 589999999999999999998 89999999998752 11 112333444556666 9999755 8888876
Q ss_pred cccE--EEeccC
Q psy1545 82 RVNC--VITEKQ 91 (454)
Q Consensus 82 ~~~~--v~~~~g 91 (454)
+... |+++||
T Consensus 69 ~~~~~~V~~~~g 80 (80)
T PF00070_consen 69 DGDGVEVTLEDG 80 (80)
T ss_dssp ETTSEEEEEETS
T ss_pred eCCEEEEEEecC
Confidence 6543 666554
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=3e-06 Score=83.94 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+||+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~--G~~V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQH--GFSVAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcC--CCEEEEEcCCC
Confidence 48999999999999999999998 89999999875
|
|
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.2e-07 Score=89.80 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=34.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
+.||+|||||++|+++|++|++..+|.+|+|+|++....
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~ 62 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGA 62 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcccc
Confidence 479999999999999999999986789999999986543
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.2e-06 Score=83.21 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=31.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~--g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ--GHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCc
Confidence 3899999999999999999998 999999999865
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.1e-06 Score=83.94 Aligned_cols=36 Identities=31% Similarity=0.567 Sum_probs=31.3
Q ss_pred CcccEEEECCCHHHHHHHHHHhhc-CCCCeEEEECCC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFL-HPGESIGLVTPS 36 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~-~~g~~v~lie~~ 36 (454)
+++||+|||||++|+++|..|++. ..|.+|+|+|+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 168999999999999999999884 238899999994
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.8e-06 Score=84.19 Aligned_cols=34 Identities=32% Similarity=0.369 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+||+||||||||++||..|++. |.+|+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~--G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA--GIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC--CCcEEEEecCCC
Confidence 5899999999999999999998 999999998743
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.2e-06 Score=82.78 Aligned_cols=103 Identities=13% Similarity=0.027 Sum_probs=64.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc----cc-ccc---------cccc------------c--c
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV----TK-TVP---------VTKL------------L--S 53 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~----~~-~~~---------~~~~------------~--~ 53 (454)
.++|+|||||++|+++|..|++. |.+|+|+|+.+..... .. .+. +... . .
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 83 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRA--GWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRD 83 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCC
Confidence 57999999999999999999998 9999999998632100 00 000 0000 0 0
Q ss_pred c-----cc------hhhhHHHHHhc---CcEEEcc-eEEEEeCccc--EEEeccCcEEEecEEEEecCCC
Q psy1545 54 D-----IT------VEETDANKFEG---LCTVIVD-TVAAIDPRVN--CVITEKQNRIKYKTLCICTGAS 106 (454)
Q Consensus 54 ~-----~~------~~~~~~~~~~~---~i~~~~~-~v~~i~~~~~--~v~~~~g~~i~~d~lviAtG~~ 106 (454)
. .. -.....+.+.+ +++++.+ +++.+..+.. .+.+++|+++.+|.||.|-|.+
T Consensus 84 g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~ 153 (386)
T PRK07236 84 GRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGR 153 (386)
T ss_pred CCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 0 00 00111122222 4566644 7888865443 4667788899999999999964
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.3e-06 Score=84.35 Aligned_cols=35 Identities=29% Similarity=0.505 Sum_probs=32.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||+||+++|..|++. |.+|+|+|+.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDS--GLRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcC--CCEEEEEecCCc
Confidence 47999999999999999999998 999999999764
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.7e-06 Score=81.48 Aligned_cols=37 Identities=22% Similarity=0.103 Sum_probs=33.9
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
|++||+|||||++|+++|++|++. |.+|+|+|++...
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~--g~~V~lie~~~~~ 38 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARR--GLRVLGLDRFMPP 38 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC--CCeEEEEecccCC
Confidence 468999999999999999999998 8999999998654
|
|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.8e-06 Score=82.57 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=36.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcC--CCCeEEEECCCCcccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLH--PGESIGLVTPSGIVKAVT 43 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~--~g~~v~lie~~~~~~~~~ 43 (454)
+.+++|||||.|||+||..|++.+ +|.+|+|+|+++..++..
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 368999999999999999999863 578999999999877644
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.5e-06 Score=83.92 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=32.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++||+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~--G~~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARA--GVDVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCC
Confidence 58999999999999999999998 99999999874
|
|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-06 Score=88.70 Aligned_cols=38 Identities=29% Similarity=0.419 Sum_probs=34.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
++||+|||+|.+|+++|..+++. |.+|+|||+.+..++
T Consensus 12 ~~dvvvvG~G~aG~~aa~~~~~~--g~~v~~iek~~~~gg 49 (581)
T PRK06134 12 ECDVLVIGSGAAGLSAAVTAAWH--GLKVIVVEKDPVFGG 49 (581)
T ss_pred ccCEEEECcCHHHHHHHHHHHHC--CCeEEEEecCCCCCc
Confidence 57999999999999999999998 899999999876543
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.3e-06 Score=82.76 Aligned_cols=35 Identities=34% Similarity=0.420 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+||||||+|+++|..|++. |.+|+|+|+.+.
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~--G~~v~v~E~~~~ 39 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGAR--GHSVTVVERAAR 39 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhc--CCcEEEEeCCCc
Confidence 37999999999999999999998 999999998764
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.1e-06 Score=82.67 Aligned_cols=33 Identities=33% Similarity=0.594 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCC-CeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPG-ESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g-~~v~lie~~~~ 38 (454)
||+|||||++|+++|..|++. | .+|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~--G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL--GKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC--CCceEEEEeCCCc
Confidence 799999999999999999998 8 99999999754
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.1e-06 Score=83.30 Aligned_cols=96 Identities=18% Similarity=0.277 Sum_probs=71.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEc-ceEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIV-DTVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~-~~v~~i~ 80 (454)
.+++|||||++|+.+|..|++. +.+|+++++.+.... +. + +.+......+.+.+ +++++. .++..++
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~--g~~Vtli~~~~~~~~----~~----~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~ 206 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRER--GKNVTLIHRSERILN----KL----F-DEEMNQIVEEELKKHEINLRLNEEVDSIE 206 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCcEEEEECCcccCc----cc----c-CHHHHHHHHHHHHHcCCEEEeCCEEEEEe
Confidence 4699999999999999999998 889999998765310 00 1 11222333445555 999975 4888998
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCCCC
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p~~ 109 (454)
.+...+.+.+|+++.+|.+++|+|.+|..
T Consensus 207 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 235 (427)
T TIGR03385 207 GEERVKVFTSGGVYQADMVILATGIKPNS 235 (427)
T ss_pred cCCCEEEEcCCCEEEeCEEEECCCccCCH
Confidence 76654455678899999999999998764
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.6e-06 Score=82.66 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~--G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY--GHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC--CCceEEEeCCCC
Confidence 4899999999999999999998 999999998754
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.3e-06 Score=81.96 Aligned_cols=33 Identities=30% Similarity=0.529 Sum_probs=31.2
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~--G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS--GLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC--CCEEEEEeCCCc
Confidence 799999999999999999998 999999999864
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >KOG2820|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.3e-06 Score=77.06 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=44.2
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccC
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVH 282 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~ 282 (454)
++.|+.++.+..+..++-.++++..+.|.+++|..+.++.+|+++|..-+. ++.
T Consensus 164 ~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k--lL~ 217 (399)
T KOG2820|consen 164 RELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK--LLP 217 (399)
T ss_pred HHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh--hcC
Confidence 458999999999988885443356788999999999999999999997665 444
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=7e-06 Score=80.76 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS 36 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~ 36 (454)
+||+|||||++|+++|..|++. |.+|+|+|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~--G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK--GIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC--CCeEEEecCC
Confidence 7999999999999999999998 9999999975
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.4e-06 Score=80.72 Aligned_cols=96 Identities=16% Similarity=0.276 Sum_probs=71.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEc-ceEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIV-DTVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~-~~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. . ..+........+.+.+ +++++. .++..++
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~--g~~Vtlv~~~~~~l~--------~-~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~ 210 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRA--GKAVTLVDNAASLLA--------S-LMPPEVSSRLQHRLTEMGVHLLLKSQLQGLE 210 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCeEEEEecCCcccc--------h-hCCHHHHHHHHHHHHhCCCEEEECCeEEEEE
Confidence 4799999999999999999998 889999999775421 0 0011222334455555 999875 4888887
Q ss_pred Cccc--EEEeccCcEEEecEEEEecCCCCCC
Q psy1545 81 PRVN--CVITEKQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~~~--~v~~~~g~~i~~d~lviAtG~~p~~ 109 (454)
.+.. .+.+.+|+++.+|.+|+|+|.+|+.
T Consensus 211 ~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 211 KTDSGIRATLDSGRSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred ccCCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence 6543 4666788899999999999998864
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.9e-06 Score=80.84 Aligned_cols=99 Identities=18% Similarity=0.295 Sum_probs=76.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+-.|..++++ |.+|+|+|+.+.+-. ..+.++.+...+.+.+ ++.++.+ +++.+.
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~L--G~~VTiie~~~~iLp----------~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~ 241 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAAL--GSKVTVVERGDRILP----------GEDPEISKELTKQLEKGGVKILLNTKVTAVE 241 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCCCC----------cCCHHHHHHHHHHHHhCCeEEEccceEEEEE
Confidence 4699999999999999999999 999999999886521 1123455555666666 8888765 777776
Q ss_pred Ccc--cEEEeccCc--EEEecEEEEecCCCCCCCCCC
Q psy1545 81 PRV--NCVITEKQN--RIKYKTLCICTGASPRKIWYS 113 (454)
Q Consensus 81 ~~~--~~v~~~~g~--~i~~d~lviAtG~~p~~~~~~ 113 (454)
... ..+.++++. .+.+|++++|+|-+|+...+.
T Consensus 242 ~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~Lg 278 (454)
T COG1249 242 KKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLG 278 (454)
T ss_pred ecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCC
Confidence 544 356666665 789999999999999987653
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.6e-06 Score=81.39 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=33.8
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
|.+||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~--G~~v~viE~~~~ 36 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKA--GIDNVILERQSR 36 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHC--CCCEEEEECCCC
Confidence 788999999999999999999998 999999999863
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.2e-06 Score=84.35 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||..|+++|++|++. |.+|+|+|+++.
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~--g~~V~vle~~~~ 35 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR--GYQVTVFDRHRY 35 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCC
Confidence 16999999999999999999998 899999999874
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.8e-05 Score=77.72 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
||+|||||.+|+++|.+|++. +.+|+|+|+...
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~--g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA--GHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCCc
Confidence 899999999999999999998 899999999853
|
|
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.3e-06 Score=80.32 Aligned_cols=42 Identities=31% Similarity=0.445 Sum_probs=37.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK 44 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~ 44 (454)
++++|||||++||+||++|++.+|..+++|+|+++..++...
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~ 42 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLR 42 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEE
Confidence 369999999999999999999988899999999988776443
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.3e-06 Score=81.26 Aligned_cols=96 Identities=8% Similarity=0.115 Sum_probs=69.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+|+++.+.+.. ... +........+.+.+ +++++.+ ++..++
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~--g~~Vtlv~~~~~~l~--------~~~-~~~~~~~l~~~l~~~GV~i~~~~~V~~i~ 213 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQR--RCKVTVIELAATVMG--------RNA-PPPVQRYLLQRHQQAGVRILLNNAIEHVV 213 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCcchh--------hhc-CHHHHHHHHHHHHHCCCEEEeCCeeEEEE
Confidence 4699999999999999999998 889999998775421 000 11122233444555 9999854 788886
Q ss_pred Ccc-cEEEeccCcEEEecEEEEecCCCCCC
Q psy1545 81 PRV-NCVITEKQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~~-~~v~~~~g~~i~~d~lviAtG~~p~~ 109 (454)
.+. ..+.+.+|+++.+|.+|+|+|.+|+.
T Consensus 214 ~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 214 DGEKVELTLQSGETLQADVVIYGIGISAND 243 (396)
T ss_pred cCCEEEEEECCCCEEECCEEEECCCCChhh
Confidence 532 34667788899999999999998764
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.2e-06 Score=77.62 Aligned_cols=38 Identities=26% Similarity=0.437 Sum_probs=33.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
++||+|||||++|++||+.|++. ++.+|+|||+....+
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~-~g~kV~viEk~~~~G 129 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKN-PNVKVAIIEQSVSPG 129 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHc-CCCeEEEEecCcccc
Confidence 47999999999999999999974 588999999987654
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.24 E-value=9e-06 Score=82.20 Aligned_cols=97 Identities=16% Similarity=0.273 Sum_probs=70.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..+++. +.+|+++++.+.+.. . .+.++.....+.+.+ +++++.+ ++..++
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~--g~~Vtli~~~~~ll~-----~-----~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~ 238 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRL--GTKVTIVEMAPQLLP-----G-----EDEDIAHILREKLENDGVKIFTGAALKGLN 238 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCcCc-----c-----ccHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence 4799999999999999999998 889999998765411 1 112233344455666 9999865 788887
Q ss_pred CcccEEEec-cC--cEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVNCVITE-KQ--NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~~v~~~-~g--~~i~~d~lviAtG~~p~~~~ 111 (454)
.+...+.+. ++ .++.+|.+++|+|.+|+...
T Consensus 239 ~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~ 272 (458)
T PRK06912 239 SYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQ 272 (458)
T ss_pred EcCCEEEEEECCceEEEEeCEEEEecCCccCCCC
Confidence 665544432 33 36999999999999987653
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.2e-06 Score=81.02 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCC--CCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHP--GESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~--g~~v~lie~~~ 37 (454)
.+||+||||||+|+++|..|++.+. |.+|+|+|+.+
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 5899999999999999999999731 36899999974
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.3e-06 Score=79.72 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=30.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~--G~~v~i~E~~~~ 35 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA--GIDVTIIERRPD 35 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT--TCEEEEEESSSS
T ss_pred CceEEEECCCHHHHHHHHHHHhc--ccccccchhccc
Confidence 37999999999999999999998 999999999854
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.5e-06 Score=86.22 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=37.9
Q ss_pred ccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 226 SRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 226 l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
.++ |++++.++.|++++..++ .+.|.+++|..+.+|.||+|+|....
T Consensus 418 a~~-Gv~i~~~~~V~~i~~~~~---~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 418 AGQ-QLTIHFGHEVARLEREDD---GWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred ccc-CcEEEeCCEeeEEEEeCC---EEEEEECCCcEEECCEEEECCCCCcc
Confidence 355 999999999999986543 45677778877889999999998754
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=98.22 E-value=2e-06 Score=61.85 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=31.7
Q ss_pred EECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc
Q psy1545 7 IIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK 44 (454)
Q Consensus 7 IIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~ 44 (454)
|||||++|+++|..|++. +.+|+|+|+++.+++...
T Consensus 1 IiGaG~sGl~aA~~L~~~--g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA--GYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHT--TSEEEEEESSSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHC--CCcEEEEecCcccCccee
Confidence 899999999999999998 889999999998876544
|
... |
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.5e-06 Score=75.78 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
++||+||||||+|++||+.|++. |++|+++|++..+++
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~--g~kV~v~E~~~~~GG 54 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKA--GLKVAVIERKLSPGG 54 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH--TS-EEEEESSSS-BT
T ss_pred cCCEEEECCChhHHHHHHHHHHC--CCeEEEEecCCCCCc
Confidence 58999999999999999999999 999999999887664
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-06 Score=74.70 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=34.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
.||+||||||+||+||++|++. |.+|+++|++-.+++
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~--g~kV~i~E~~ls~GG 67 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKA--GLKVAIFERKLSFGG 67 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhC--CceEEEEEeecccCC
Confidence 5999999999999999999998 999999999987764
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.2e-05 Score=81.76 Aligned_cols=98 Identities=16% Similarity=0.236 Sum_probs=70.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||++|+.+|..|++. +.+|+|+++.+.+. +.+ +.++.....+.+.+ +++++.+ ++..++
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~--g~~Vtli~~~~~il-----~~~-----~~~~~~~l~~~l~~~gI~i~~~~~v~~i~ 248 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADF--GVEVTVVEAADRIL-----PTE-----DAELSKEVARLLKKLGVRVVTGAKVLGLT 248 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCeEEEEEecCccC-----CcC-----CHHHHHHHHHHHHhcCCEEEeCcEEEEEE
Confidence 4799999999999999999998 89999999887531 111 12233334455666 9999865 788886
Q ss_pred C--ccc-E-EEeccC--cEEEecEEEEecCCCCCCCCC
Q psy1545 81 P--RVN-C-VITEKQ--NRIKYKTLCICTGASPRKIWY 112 (454)
Q Consensus 81 ~--~~~-~-v~~~~g--~~i~~d~lviAtG~~p~~~~~ 112 (454)
. +.. . +.+.+| +++.||.+++|+|.+|....+
T Consensus 249 ~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l 286 (472)
T PRK05976 249 LKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGI 286 (472)
T ss_pred EecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCC
Confidence 3 232 2 223355 369999999999999876543
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-05 Score=80.98 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHhh----cCCCCeEEEECCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAF----LHPGESIGLVTPS 36 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~----~~~g~~v~lie~~ 36 (454)
+||+|||||++|+++|..|++ . |.+|+|||+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~--G~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK--DLKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC--CCeEEEEeCC
Confidence 699999999999999999998 5 8999999994
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-05 Score=83.07 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=32.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||++|+++|..|++. |.+|+|||+.+.
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~--G~~v~viE~~~~ 57 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQ--GVPVVLLDDDDT 57 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC--CCcEEEEeCCCC
Confidence 47999999999999999999998 999999999863
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.2e-05 Score=81.42 Aligned_cols=97 Identities=15% Similarity=0.235 Sum_probs=71.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+. +.+ +.+......+.+.+ +++++.+ ++..++
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~--g~~Vtli~~~~~~l-----~~~-----~~~~~~~l~~~l~~~gV~i~~~~~V~~i~ 240 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASL--GAEVTIVEALPRIL-----PGE-----DKEISKLAERALKKRGIKIKTGAKAKKVE 240 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEEcCCCcC-----CcC-----CHHHHHHHHHHHHHcCCEEEeCCEEEEEE
Confidence 4699999999999999999998 89999999987541 111 11233334445555 9999865 888887
Q ss_pred Cccc--EEEeccC---cEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVN--CVITEKQ---NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~--~v~~~~g---~~i~~d~lviAtG~~p~~~~ 111 (454)
.+.. .+.+.++ +++.+|.+|+|+|.+|....
T Consensus 241 ~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 241 QTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred EeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCC
Confidence 6543 3444445 67999999999999987654
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-05 Score=82.96 Aligned_cols=35 Identities=31% Similarity=0.328 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~--G~~v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRR--GVDSILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCC
Confidence 47999999999999999999998 999999998753
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.5e-05 Score=80.19 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=70.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEc-ceEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIV-DTVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~-~~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+|+++.+.+.. .+ +.+......+.+.+ +++++. .++..++
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~--g~~Vtli~~~~~l~~-----~~-----d~~~~~~l~~~l~~~gI~i~~~~~v~~i~ 216 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYER--GLHPTLIHRSDKINK-----LM-----DADMNQPILDELDKREIPYRLNEEIDAIN 216 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCcEEEEecccccch-----hc-----CHHHHHHHHHHHHhcCCEEEECCeEEEEe
Confidence 3699999999999999999998 889999998765321 11 11233344455666 999975 4888887
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCCCC
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p~~ 109 (454)
. ..+.+.+|+.+.+|.+++|+|.+|+.
T Consensus 217 ~--~~v~~~~g~~~~~D~vl~a~G~~pn~ 243 (438)
T PRK13512 217 G--NEVTFKSGKVEHYDMIIEGVGTHPNS 243 (438)
T ss_pred C--CEEEECCCCEEEeCEEEECcCCCcCh
Confidence 5 35666678889999999999998865
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.5e-05 Score=78.98 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=33.7
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
|++||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 1 ~~~dV~IvGaGpaGl~~A~~L~~~--G~~v~v~E~~~~ 36 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLA--GIDSVVLERRSR 36 (392)
T ss_pred CcceEEEECCCHHHHHHHHHHHhc--CCCEEEEEcCCc
Confidence 788999999999999999999998 999999999863
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.8e-05 Score=79.75 Aligned_cols=96 Identities=18% Similarity=0.271 Sum_probs=69.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEc-ceEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIV-DTVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~-~~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. |.+|+|+++.+.+. +.+ +.+.... ...+.+ +++++. .+++.++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~--G~~Vtli~~~~~ll-----~~~-----d~~~~~~-l~~l~~~~v~i~~~~~v~~i~ 233 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSAL--GVRVTVVNRSGRLL-----RHL-----DDDISER-FTELASKRWDVRLGRNVVGVS 233 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEEcCCccc-----ccc-----CHHHHHH-HHHHHhcCeEEEeCCEEEEEE
Confidence 4799999999999999999998 89999999987542 111 1112222 222233 888874 4888887
Q ss_pred Cccc--EEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVN--CVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~--~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
.... .+.+.+++.+.+|.+++|+|.+|....
T Consensus 234 ~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 234 QDGSGVTLRLDDGSTVEADVLLVATGRVPNGDL 266 (451)
T ss_pred EcCCEEEEEECCCcEeecCEEEEEECCccCccc
Confidence 5543 455667788999999999999987654
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.5e-06 Score=81.82 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=67.4
Q ss_pred CeEEEEcCchhHHHHHHHhc----CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS----NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPS 211 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (454)
++++|||||+.|+.+|..|+ +.+|+++++++.+.- ....+..........
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~--~~~~~~~~~~~~~~~------------------------ 54 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSF--GACGLPYFVGGFFDD------------------------ 54 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCccee--ecCCCceEeccccCC------------------------
Confidence 47999999999999999885 458999998875420 000000000000000
Q ss_pred CCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEe-cCCcEEe--cCEEEEeeccCcCcc
Q psy1545 212 LGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL-TNGHTHA--CDIVVSAIGVVPNSN 278 (454)
Q Consensus 212 l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~-~~g~~~~--~D~vi~a~G~~p~~~ 278 (454)
..++. ....+.+++.||+++.++.|.++..+++ .+.+.. .++.+++ +|.+|+|||.+|..+
T Consensus 55 -~~~~~--~~~~~~~~~~gv~~~~~~~V~~id~~~~---~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 118 (444)
T PRK09564 55 -PNTMI--ARTPEEFIKSGIDVKTEHEVVKVDAKNK---TITVKNLKTGSIFNDTYDKLMIATGARPIIP 118 (444)
T ss_pred -HHHhh--cCCHHHHHHCCCeEEecCEEEEEECCCC---EEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence 00000 0011223457999999999999987653 333332 2355666 999999999998764
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.8e-05 Score=80.16 Aligned_cols=97 Identities=16% Similarity=0.176 Sum_probs=72.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..+++. +.+|+|+++.+.+.. . .+.+......+.+.+ +++++.+ .++.++
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~--g~~Vtli~~~~~~l~-----~-----~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~ 243 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAAL--GVKVTLINTRDRLLS-----F-----LDDEISDALSYHLRDSGVTIRHNEEVEKVE 243 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCcCC-----c-----CCHHHHHHHHHHHHHcCCEEEECCEEEEEE
Confidence 4799999999999999999998 899999999875421 0 112233444555656 9999754 888886
Q ss_pred Ccc--cEEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRV--NCVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~--~~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
... ..+.+.+|+++.+|.+++|+|.+|+...
T Consensus 244 ~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 276 (461)
T PRK05249 244 GGDDGVIVHLKSGKKIKADCLLYANGRTGNTDG 276 (461)
T ss_pred EeCCeEEEEECCCCEEEeCEEEEeecCCccccC
Confidence 433 2455567788999999999999987653
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.6e-05 Score=82.15 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=32.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~--G~~v~v~Er~~~ 44 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQY--GVRVLVLERWPT 44 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCC
Confidence 47999999999999999999998 999999999853
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.4e-06 Score=85.42 Aligned_cols=37 Identities=27% Similarity=0.500 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
||||||||+||++||..+++. |.+|+|||+.+.+++.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~--G~~VlLiE~~~~lGG~ 37 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARA--GAKVLLIEKGGFLGGM 37 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHT--TS-EEEE-SSSSSTGG
T ss_pred CEEEECccHHHHHHHHHHHHC--CCEEEEEECCccCCCc
Confidence 899999999999999999998 9999999999887653
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=2e-05 Score=76.88 Aligned_cols=33 Identities=24% Similarity=0.149 Sum_probs=29.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+||+||||||||+++|..|++. .+|+++|+.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~---~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK---MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc---CCEEEEECCCc
Confidence 8999999999999999999883 79999998763
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.3e-06 Score=84.18 Aligned_cols=138 Identities=18% Similarity=0.266 Sum_probs=67.3
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccccc------------CCc----------chhhhHHHhhccCCCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFL------------DPG----------AAEFFQDSINKTNTAK 192 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~------------d~~----------~~~~~~~~l~~~~~~~ 192 (454)
+|+|||||++|+-+|..++ |.+|.++++++++..+.+ +.+ -...+...+......+
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 5899999999999999886 999999999876542210 000 1112222222211111
Q ss_pred hhhhhhhcccccCCCCCCCCCCccccc---c-ccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEE
Q psy1545 193 PETIFKRMRYNTGGEKGPSLGPDWHTQ---V-NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVV 268 (454)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---~-~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi 268 (454)
......+..+.+..+-...+-|.-.+. + .+...+++.||+++++++|.+++..++ ..+.|+++++.++.+|.||
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~--~~f~v~~~~~~~~~a~~vI 159 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED--GVFGVKTKNGGEYEADAVI 159 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT--EEEEEEETTTEEEEESEEE
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC--ceeEeeccCcccccCCEEE
Confidence 111222222222111111111111111 1 134455778999999999999987653 3577888777899999999
Q ss_pred EeeccCcC
Q psy1545 269 SAIGVVPN 276 (454)
Q Consensus 269 ~a~G~~p~ 276 (454)
+|+|-...
T Consensus 160 LAtGG~S~ 167 (409)
T PF03486_consen 160 LATGGKSY 167 (409)
T ss_dssp E----SSS
T ss_pred EecCCCCc
Confidence 99997653
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.8e-05 Score=80.63 Aligned_cols=103 Identities=21% Similarity=0.263 Sum_probs=65.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc-ccccccc---------------ccccc--------------c
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV-KAVTKTV---------------PVTKL--------------L 52 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~-~~~~~~~---------------~~~~~--------------~ 52 (454)
|||+|||||+||+.+|..+++. +.+|+|+++.... +.+...+ .+... +
T Consensus 1 yDViVIGaG~AGl~aA~ala~~--G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~l 78 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM--GAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVL 78 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC--CCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheec
Confidence 6999999999999999999998 8999999986421 1111000 00000 0
Q ss_pred -----ccc-----chh-----hhHHHHHhc--CcEEEcceEEEEeCc--c--cEEEeccCcEEEecEEEEecCCCC
Q psy1545 53 -----SDI-----TVE-----ETDANKFEG--LCTVIVDTVAAIDPR--V--NCVITEKQNRIKYKTLCICTGASP 107 (454)
Q Consensus 53 -----~~~-----~~~-----~~~~~~~~~--~i~~~~~~v~~i~~~--~--~~v~~~~g~~i~~d~lviAtG~~p 107 (454)
+.. .+. ....+.+.+ ++.++.+.++.+..+ . ..|.+.+|..+.++.+|+|||...
T Consensus 79 n~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 79 NSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred ccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 000 000 111122333 788888888777432 2 246677788999999999999864
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=98.13 E-value=2e-05 Score=79.55 Aligned_cols=97 Identities=16% Similarity=0.140 Sum_probs=72.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+. +.+ +.+......+.+.+ +++++.+ ++..++
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l-----~~~-----~~~~~~~l~~~L~~~GV~i~~~~~V~~i~ 235 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGL--GSETHLFVRGDAPL-----RGF-----DPDIRETLVEEMEKKGIRLHTNAVPKAVE 235 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCc-----ccc-----CHHHHHHHHHHHHHCCcEEECCCEEEEEE
Confidence 4799999999999999999998 89999999876431 011 11233344455666 9999855 888887
Q ss_pred Ccc---cEEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRV---NCVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~---~~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
.+. ..+.+.+|+.+.+|.+|+|+|.+|+...
T Consensus 236 ~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~ 269 (450)
T PRK06116 236 KNADGSLTLTLEDGETLTVDCLIWAIGREPNTDG 269 (450)
T ss_pred EcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCC
Confidence 532 3456667888999999999999987754
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=98.13 E-value=2e-05 Score=79.40 Aligned_cols=96 Identities=21% Similarity=0.219 Sum_probs=71.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..+++. +.+|+++++.+.+.. .+ +.+......+.+.+ +++++.+ ++..++
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~--G~~Vtli~~~~~~l~-----~~-----d~~~~~~l~~~l~~~gV~i~~~~~v~~i~ 234 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGL--GVQVTLIYRGELILR-----GF-----DDDMRALLARNMEGRGIRIHPQTSLTSIT 234 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHc--CCeEEEEEeCCCCCc-----cc-----CHHHHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence 4699999999999999999988 889999998765310 11 12233334455656 9999855 788886
Q ss_pred Cc--ccEEEeccCcEEEecEEEEecCCCCCCC
Q psy1545 81 PR--VNCVITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~--~~~v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
.. ...+.+.+++.+.+|.+|+|+|.+|...
T Consensus 235 ~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 235 KTDDGLKVTLSHGEEIVADVVLFATGRSPNTK 266 (446)
T ss_pred EcCCeEEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence 43 3345566778899999999999988764
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.6e-05 Score=78.70 Aligned_cols=32 Identities=34% Similarity=0.436 Sum_probs=29.4
Q ss_pred EEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 6 LIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 6 vIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
+|||||+||++||..|++. +.+|+|+|+.+..
T Consensus 1 vIIGgG~aGl~aAi~aa~~--G~~V~llEk~~~~ 32 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE--GLSVLLLEKNKKI 32 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc--CCcEEEEecCccc
Confidence 6999999999999999998 8999999998754
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.2e-05 Score=68.97 Aligned_cols=133 Identities=19% Similarity=0.218 Sum_probs=63.6
Q ss_pred EEEcCchhHHHHHHHhc--CCc-EEEEEeCCCccccccCC-cchhhhHHHhh--ccCCCChhh-hhhhc-ccccCCCCCC
Q psy1545 139 VVIGNGGIATELVHELS--NVD-IVWVVKDKHISATFLDP-GAAEFFQDSIN--KTNTAKPET-IFKRM-RYNTGGEKGP 210 (454)
Q Consensus 139 vVvG~G~~g~e~a~~l~--g~~-V~~i~~~~~~~~~~~d~-~~~~~~~~~l~--~~~~~~~~~-~~~~~-~~~~~~~~~~ 210 (454)
+|||+|+.|+-+|..|. |.+ ++|+++.+.+...+..- ........... ....++... ..... .... ....
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRW--PHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHH--SBSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCC--Cccc
Confidence 69999999999999886 888 99999987654432110 00000000000 000000000 00000 0000 0000
Q ss_pred CCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc--CcCcc
Q psy1545 211 SLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV--VPNSN 278 (454)
Q Consensus 211 ~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~--~p~~~ 278 (454)
.-..++.+. +....++.+++++++++|+++..+++ .+.|++++++++.||.||+|+|. .|..+
T Consensus 79 ~~~~~v~~y--l~~~~~~~~l~i~~~~~V~~v~~~~~---~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 79 PSGEEVLDY--LQEYAERFGLEIRFNTRVESVRRDGD---GWTVTTRDGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp EBHHHHHHH--HHHHHHHTTGGEETS--EEEEEEETT---TEEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred CCHHHHHHH--HHHHHhhcCcccccCCEEEEEEEecc---EEEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence 111112111 23333667888999999999998764 48899999988999999999997 55443
|
... |
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=3e-05 Score=78.68 Aligned_cols=95 Identities=19% Similarity=0.284 Sum_probs=69.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++...+. . .+.+......+.+.+ +++++.+ .+..++
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~--g~~Vtlv~~~~~l~------~-----~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~ 245 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARL--GSRVTVLARSRVLS------Q-----EDPAVGEAIEAAFRREGIEVLKQTQASEVD 245 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEECCCCCC------C-----CCHHHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 4699999999999999999998 88999998754321 1 112233444555666 9999865 888887
Q ss_pred CcccE--EEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVNC--VITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~~--v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
.+... +.+ ++.++.+|.+++|+|.+|+...
T Consensus 246 ~~~~~~~v~~-~~~~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 246 YNGREFILET-NAGTLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred EcCCEEEEEE-CCCEEEeCEEEEccCCCCCcCC
Confidence 65543 333 3447999999999999987653
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0001 Score=71.10 Aligned_cols=53 Identities=28% Similarity=0.211 Sum_probs=44.1
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
.+.+++.|+++++++.|..++..++ ....+.+++|.++++|.||+|+|+....
T Consensus 180 ~~~l~~~G~ei~f~t~VeDi~~~~~--~~~~v~~~~g~~i~~~~vvlA~Grsg~d 232 (486)
T COG2509 180 REYLESLGGEIRFNTEVEDIEIEDN--EVLGVKLTKGEEIEADYVVLAPGRSGRD 232 (486)
T ss_pred HHHHHhcCcEEEeeeEEEEEEecCC--ceEEEEccCCcEEecCEEEEccCcchHH
Confidence 3444669999999999999987763 3567889999999999999999998754
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.6e-05 Score=77.51 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=32.8
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
|..+|+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 1 ~~~~V~IvGgGiaGl~~A~~L~~~--G~~V~i~E~~~~ 36 (400)
T PRK06475 1 TRGSPLIAGAGVAGLSAALELAAR--GWAVTIIEKAQE 36 (400)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCc
Confidence 557899999999999999999997 999999998754
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.1e-05 Score=78.46 Aligned_cols=97 Identities=21% Similarity=0.295 Sum_probs=69.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. .+ +.+......+.+.+ +++++.+ ++..++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~--g~~Vtli~~~~~~l~-----~~-----d~~~~~~l~~~l~~~gV~i~~~~~V~~i~ 234 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARL--GSEVTILQRSDRLLP-----RE-----EPEISAAVEEALAEEGIEVVTSAQVKAVS 234 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCcEEEEEcCCcCCC-----cc-----CHHHHHHHHHHHHHcCCEEEcCcEEEEEE
Confidence 4799999999999999999998 889999998865421 11 11223333445555 9999865 688887
Q ss_pred Cccc--EEEec---cCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVN--CVITE---KQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~--~v~~~---~g~~i~~d~lviAtG~~p~~~~ 111 (454)
.++. .+.+. +++++.+|.+++|+|.+|....
T Consensus 235 ~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 235 VRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred EcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCC
Confidence 5432 33432 2357999999999999988764
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.6e-05 Score=79.22 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCC-CeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPG-ESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g-~~v~lie~~~~~ 39 (454)
++||+|||||..|+++|++|++.. | .+|+|+|++...
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~-g~~~V~vle~~~~~ 67 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEH-GITNVAVLEKGWLG 67 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhc-CCCeEEEEEccccc
Confidence 379999999999999999999841 5 489999998654
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.4e-05 Score=58.90 Aligned_cols=82 Identities=20% Similarity=0.419 Sum_probs=63.4
Q ss_pred eeeeecCeEEEEeecccCCcCCCCceEEEeecC-CccEEEEEEECCeEEEEEEEcCCchHHHHHHHHhcCCCcchhhhhc
Q psy1545 364 HMTKFFGYKVILLGLFNGQTLENDYEILLRVTR-GEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDL 442 (454)
Q Consensus 364 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~~~~k~~~~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~ 442 (454)
+|+.++|.++.++|...... +++++.++ +..|+-+++++|+++|+..+|.......++.+|..+..++. +.|
T Consensus 2 FWSdQ~~~~iq~~G~~~~~~-----~~v~rg~~~~~~~~~~y~~~g~lva~~~vn~~~~~~~~rrli~~~~~~~~--~~l 74 (85)
T PF14759_consen 2 FWSDQYGVRIQIAGLPGGAD-----EVVVRGDPESGKFVAFYLRDGRLVAAVSVNRPRDLRAARRLIAAGARVDP--ARL 74 (85)
T ss_dssp EEEEETTEEEEEEE-STTSS-----EEEEEEETTTTEEEEEEEETTEEEEEEEES-HHHHHHHHHHHHTT-B--H--HHH
T ss_pred eecccCCCeEEEEECCCCCC-----EEEEEccCCCCcEEEEEEcCCEEEEEEecCCHHHHHHHHHHHHCCCCcCH--HHh
Confidence 47889999999999965432 34555454 36788888899999999999999899999999999999997 899
Q ss_pred cCCCCCCCCC
Q psy1545 443 LNPNIDIDDY 452 (454)
Q Consensus 443 ~~~~~~~~~~ 452 (454)
.+|+++|++.
T Consensus 75 ~d~~~~L~~l 84 (85)
T PF14759_consen 75 ADPSVDLRSL 84 (85)
T ss_dssp HSTTSHHHHH
T ss_pred cCCCCChHHh
Confidence 9999998753
|
... |
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.3e-05 Score=77.83 Aligned_cols=97 Identities=21% Similarity=0.146 Sum_probs=71.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+..|..|++. +.+|+|+++.+.+. +.+ +.+......+.+.+ +++++.+ .+..+.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~--g~~Vtli~~~~~il-----~~~-----d~~~~~~~~~~l~~~gI~i~~~~~v~~i~ 234 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGL--GSETHLVIRHERVL-----RSF-----DSMISETITEEYEKEGINVHKLSKPVKVE 234 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCCC-----ccc-----CHHHHHHHHHHHHHcCCEEEcCCEEEEEE
Confidence 4799999999999999999998 89999999876431 111 11233344455656 9999865 788886
Q ss_pred Ccc---cEEEeccC-cEEEecEEEEecCCCCCCCC
Q psy1545 81 PRV---NCVITEKQ-NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~---~~v~~~~g-~~i~~d~lviAtG~~p~~~~ 111 (454)
.+. ..+.+.++ +.+.+|.+++|+|.+|+...
T Consensus 235 ~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~ 269 (450)
T TIGR01421 235 KTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKG 269 (450)
T ss_pred EeCCceEEEEECCCcEEEEcCEEEEeeCCCcCccc
Confidence 432 24555566 57999999999999988753
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=3e-05 Score=78.79 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=70.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. . .+.++.....+.+.+ +++++.+ ++..++
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~--g~~Vtli~~~~~~l~-----~-----~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~ 251 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRL--GAEVTILEALPAFLA-----A-----ADEQVAKEAAKAFTKQGLDIHLGVKIGEIK 251 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCCccCC-----c-----CCHHHHHHHHHHHHHcCcEEEeCcEEEEEE
Confidence 4799999999999999999998 899999999775421 0 112233344455656 9999855 888887
Q ss_pred Cccc--EEEecc--C--cEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVN--CVITEK--Q--NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~--~v~~~~--g--~~i~~d~lviAtG~~p~~~~ 111 (454)
.+.. .+.+.+ | ..+.+|.+++|+|.+|....
T Consensus 252 ~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~ 288 (475)
T PRK06327 252 TGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred EcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCC
Confidence 5543 333333 3 47999999999999988753
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.4e-05 Score=78.15 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=69.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. . .+.+......+.+.+ +++++.+ ++..++
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~--G~~Vtli~~~~~~l~-----~-----~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~ 239 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRF--GSEVTVIERGPRLLP-----R-----EDEDVAAAVREILEREGIDVRLNAECIRVE 239 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCeEEEEEcCCCCCc-----c-----cCHHHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 4799999999999999999998 889999999875421 0 111223334445555 9999854 888887
Q ss_pred Cccc--EEEec---cCcEEEecEEEEecCCCCCCC
Q psy1545 81 PRVN--CVITE---KQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~~--~v~~~---~g~~i~~d~lviAtG~~p~~~ 110 (454)
..+. .+.+. ++..+.+|.+|+|+|.+|+..
T Consensus 240 ~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 240 RDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred EcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 6432 33332 235799999999999998865
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.7e-05 Score=76.79 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=31.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCC-CeEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPG-ESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g-~~v~lie~~~~~ 39 (454)
++|+|||||++|+++|..|++. | .+|+|+|+.+..
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~--g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKH--SHLNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCCCEEEEecCCcC
Confidence 3799999999999999999997 6 599999998653
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00013 Score=73.40 Aligned_cols=132 Identities=22% Similarity=0.321 Sum_probs=74.8
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccccc-CCcch--------------hhhHHHhhccCCCChhhhh
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFL-DPGAA--------------EFFQDSINKTNTAKPETIF 197 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~-d~~~~--------------~~~~~~l~~~~~~~~~~~~ 197 (454)
.++|+|||+|++|+-+|..|. |.+|+++++++.+-..+. ++... ..+.+.+.. +.+.
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~t---n~p~--- 83 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRT---NLPR--- 83 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhc---cCCH---
Confidence 689999999999999999886 999999999886654331 11110 000111110 0000
Q ss_pred hhcccccCCCCCCC----------CC--CccccccccccCccCCceE--EEeCceEEEEEcCCCCccceEEEecCC----
Q psy1545 198 KRMRYNTGGEKGPS----------LG--PDWHTQVNLHGSSRDTKIT--IEYSCEVERIVDSEDDTCNAYVKLTNG---- 259 (454)
Q Consensus 198 ~~~~~~~~~~~~~~----------l~--~~~~~~~~~~~~l~~~gv~--i~~~~~v~~i~~~~~~~~~~~v~~~~g---- 259 (454)
..+.+.- .+..+. +. .++.+. +.+..+..|+. ++++++|++++..++ .+.|...++
T Consensus 84 ~~m~f~d-fp~~~~~~~~~~~~~~fp~~~ev~~Y--L~~~a~~fgl~~~I~~~t~V~~V~~~~~---~w~V~~~~~~~~~ 157 (461)
T PLN02172 84 ECMGYRD-FPFVPRFDDESRDSRRYPSHREVLAY--LQDFAREFKIEEMVRFETEVVRVEPVDG---KWRVQSKNSGGFS 157 (461)
T ss_pred hhccCCC-CCCCcccccccCcCCCCCCHHHHHHH--HHHHHHHcCCcceEEecCEEEEEeecCC---eEEEEEEcCCCce
Confidence 0011100 011110 00 111111 22333556777 899999999987642 566766533
Q ss_pred cEEecCEEEEeec--cCcCcc
Q psy1545 260 HTHACDIVVSAIG--VVPNSN 278 (454)
Q Consensus 260 ~~~~~D~vi~a~G--~~p~~~ 278 (454)
.+..+|.||+|+| ..|+.+
T Consensus 158 ~~~~~d~VIvAtG~~~~P~~P 178 (461)
T PLN02172 158 KDEIFDAVVVCNGHYTEPNVA 178 (461)
T ss_pred EEEEcCEEEEeccCCCCCcCC
Confidence 2467999999999 466654
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.3e-05 Score=77.43 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=71.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||..|+.+|..|++. +.+|+++++.+.+.. . . +.+......+.+.+ +++++.+ ++..++
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~--g~~Vtli~~~~~~l~-----~----~-d~~~~~~l~~~L~~~gV~i~~~~~v~~v~ 245 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTEL--GVKVTLVSSRDRVLP-----G----E-DADAAEVLEEVFARRGMTVLKRSRAESVE 245 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEEcCCcCCC-----C----C-CHHHHHHHHHHHHHCCcEEEcCCEEEEEE
Confidence 3699999999999999999998 899999998764311 0 0 11222333455555 9999855 788885
Q ss_pred Ccc--cEEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRV--NCVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~--~~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
... ..+.+.+|+++.+|.+++|+|.+|....
T Consensus 246 ~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 246 RTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAG 278 (466)
T ss_pred EeCCEEEEEECCCcEEEecEEEEeecCCcCCCC
Confidence 432 3455567889999999999999988754
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.4e-05 Score=76.98 Aligned_cols=97 Identities=15% Similarity=0.243 Sum_probs=68.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhcCcEEEc-ceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEGLCTVIV-DTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~~i~~ 81 (454)
.+++|||||+.|+.+|..|++. +.+|++|++.+.+.. .+ +.+......+.+..+++++. .++..++.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~--G~~Vtli~~~~~ll~-----~~-----d~~~~~~l~~~~~~gI~i~~~~~V~~i~~ 237 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSAL--GTRVTIVNRSTKLLR-----HL-----DEDISDRFTEIAKKKWDIRLGRNVTAVEQ 237 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCcEEEEEccCcccc-----cc-----CHHHHHHHHHHHhcCCEEEeCCEEEEEEE
Confidence 4799999999999999999998 889999998765311 11 11222222222223888874 48888875
Q ss_pred ccc--EEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 82 RVN--CVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 82 ~~~--~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
+.. .+.+.+|+++.+|.+++|+|.+|+...
T Consensus 238 ~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 238 DGDGVTLTLDDGSTVTADVLLVATGRVPNGDL 269 (452)
T ss_pred cCCeEEEEEcCCCEEEcCEEEEeeccCcCCCC
Confidence 433 455556778999999999999987643
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.9e-05 Score=77.85 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=70.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+|+++.+... +.+ +.+......+.+.+ +++++.+ ++..++
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~--G~~Vtlv~~~~~~l-----~~~-----d~~~~~~l~~~l~~~gV~i~~~~~v~~i~ 240 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNY--GVDVTIVEFLDRAL-----PNE-----DAEVSKEIAKQYKKLGVKILTGTKVESID 240 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHc--CCeEEEEecCCCcC-----Ccc-----CHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence 4799999999999999999998 88999999876431 111 12233344555666 9999855 888887
Q ss_pred CcccE--EEec--cC--cEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVNC--VITE--KQ--NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~~--v~~~--~g--~~i~~d~lviAtG~~p~~~~ 111 (454)
.+... +.+. +| +++.+|.+++|+|.+|....
T Consensus 241 ~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~ 277 (466)
T PRK07818 241 DNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEG 277 (466)
T ss_pred EeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCC
Confidence 55432 3333 45 37999999999999987653
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.8e-05 Score=78.19 Aligned_cols=35 Identities=34% Similarity=0.522 Sum_probs=28.4
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCC-CeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPG-ESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g-~~v~lie~~~~ 38 (454)
||||||||+||..+|..|++..+. .+|+|||++..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~ 36 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI 36 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence 799999999999999999998554 89999999843
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.3e-05 Score=78.03 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++||+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~--G~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKD--GRRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHc--CCeEEEEECcC
Confidence 47999999999999999999998 99999999874
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.8e-05 Score=77.56 Aligned_cols=97 Identities=16% Similarity=0.197 Sum_probs=71.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+..|..+++. +.+|+|+++.+..- +. + +.+......+.+.+ +++++.+ ++..++
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~--G~~Vtli~~~~~~l-----~~----~-d~~~~~~l~~~l~~~GI~i~~~~~V~~i~ 271 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGM--GATVDLFFRKELPL-----RG----F-DDEMRAVVARNLEGRGINLHPRTNLTQLT 271 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHc--CCeEEEEEecCCcC-----cc----c-CHHHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 4799999999999999999998 89999999876431 00 1 12233334455666 9999865 788886
Q ss_pred Ccc--cEEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRV--NCVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~--~~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
... ..+.+.+|+++.+|.+++|+|.+|....
T Consensus 272 ~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 272 KTEGGIKVITDHGEEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred EeCCeEEEEECCCcEEEcCEEEEeecCCCCCCC
Confidence 432 3455556778999999999999987654
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.4e-05 Score=79.09 Aligned_cols=112 Identities=15% Similarity=0.187 Sum_probs=71.3
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (454)
..+++|||||+.|+.+|..++ |.+|++++.. +-....+... +...+ ......
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~---~~~~~---------------------~~~~~~ 265 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVG---IENLI---------------------SVPYTT 265 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcC---ccccc---------------------ccCCCC
Confidence 578999999999999999986 9999998632 1110000000 00000 000001
Q ss_pred CCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 213 GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 213 ~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
++++... +.+.+++.|++++.+++|.++...++ ...+.+++|.++.+|.+++|+|.+|..
T Consensus 266 ~~~l~~~--l~~~l~~~gv~i~~~~~V~~I~~~~~---~~~v~~~~g~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 266 GSQLAAN--LEEHIKQYPIDLMENQRAKKIETEDG---LIVVTLESGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred HHHHHHH--HHHHHHHhCCeEEcCCEEEEEEecCC---eEEEEECCCCEEEeCEEEECCCCCcCC
Confidence 1111111 22334557999999999999976542 466777888889999999999998754
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.8e-05 Score=75.61 Aligned_cols=136 Identities=19% Similarity=0.215 Sum_probs=78.7
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc----cCCcchhhhH-----HHhhccCCCChhhhhhhcccc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF----LDPGAAEFFQ-----DSINKTNTAKPETIFKRMRYN 203 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~----~d~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~ 203 (454)
.++|+|||||+.|+-+|..|. |.+|+++++.+.+.... +.+...+.+. +.+.+... . .....+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~-~----~~~~~~~ 78 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGF-G----FDGVDLF 78 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCC-C----ccceEEE
Confidence 678999999999999999996 99999999876543210 1111111111 01110000 0 0000011
Q ss_pred cC-CC---------CC-CCCCC--cccc-c--cccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEE
Q psy1545 204 TG-GE---------KG-PSLGP--DWHT-Q--VNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIV 267 (454)
Q Consensus 204 ~~-~~---------~~-~~l~~--~~~~-~--~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~v 267 (454)
.. .. .. ..... .+.+ . ..+.+.+++.|++++.++.+++++..++ .+.+.+.+|+++.+|.|
T Consensus 79 ~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~---~~~v~~~~g~~~~ad~v 155 (375)
T PRK06847 79 DPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDD---GVTVTFSDGTTGRYDLV 155 (375)
T ss_pred CCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCC---EEEEEEcCCCEEEcCEE
Confidence 00 00 00 00000 0000 0 0123334567999999999999987553 46788889989999999
Q ss_pred EEeeccCcCcc
Q psy1545 268 VSAIGVVPNSN 278 (454)
Q Consensus 268 i~a~G~~p~~~ 278 (454)
|.|.|..+...
T Consensus 156 I~AdG~~s~~r 166 (375)
T PRK06847 156 VGADGLYSKVR 166 (375)
T ss_pred EECcCCCcchh
Confidence 99999987653
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.1e-05 Score=79.31 Aligned_cols=103 Identities=20% Similarity=0.221 Sum_probs=66.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc-ccccccccccc-------------------------------
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI-VKAVTKTVPVT------------------------------- 49 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~-~~~~~~~~~~~------------------------------- 49 (454)
.|||+|||||.||+.||...++. |.++.|+.-+.. .+.+...|..+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARm--G~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~ 81 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARM--GAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRM 81 (621)
T ss_pred CCceEEECCCccchHHHHhhhcc--CCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhh
Confidence 38999999999999999999998 888888876532 11111111100
Q ss_pred ----cccc----c-----cchhhhHHHHHhc--CcEEEcceEEEEeCcc----cEEEeccCcEEEecEEEEecCCC
Q psy1545 50 ----KLLS----D-----ITVEETDANKFEG--LCTVIVDTVAAIDPRV----NCVITEKQNRIKYKTLCICTGAS 106 (454)
Q Consensus 50 ----~~~~----~-----~~~~~~~~~~~~~--~i~~~~~~v~~i~~~~----~~v~~~~g~~i~~d~lviAtG~~ 106 (454)
+... . ..+.....+.+.. ++.++++.|..+..++ .-|.+.+|..+.++.|||+||.-
T Consensus 82 LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 82 LNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred ccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 0000 0 0000111122223 8999999888776532 24567889999999999999963
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.1e-05 Score=82.35 Aligned_cols=97 Identities=19% Similarity=0.277 Sum_probs=71.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+-+|..|++. |.+|+|+++.+.+. +..+ +........+.+.+ +|+++.+ .++.+.
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~--G~~Vtvv~~~~~ll--------~~~l-d~~~~~~l~~~l~~~GV~v~~~~~v~~i~ 209 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNL--GMDVSVIHHAPGLM--------AKQL-DQTAGRLLQRELEQKGLTFLLEKDTVEIV 209 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCeEEEEccCCchh--------hhhc-CHHHHHHHHHHHHHcCCEEEeCCceEEEE
Confidence 4699999999999999999998 89999999876431 0111 11222333445555 9999865 677776
Q ss_pred Cccc--EEEeccCcEEEecEEEEecCCCCCCC
Q psy1545 81 PRVN--CVITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~~--~v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
.+.. .|.+.+|+.+.+|.+|+|+|.+|+..
T Consensus 210 ~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~ 241 (785)
T TIGR02374 210 GATKADRIRFKDGSSLEADLIVMAAGIRPNDE 241 (785)
T ss_pred cCCceEEEEECCCCEEEcCEEEECCCCCcCcH
Confidence 5432 46677889999999999999988753
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.6e-05 Score=76.27 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=68.1
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (454)
.++++|||||+.|+.+|..|. +.+|+++++++.+.- .+.+...+......
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~---~~~l~~~~~g~~~~------------------------- 61 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLF---TPLLPQTTTGTLEF------------------------- 61 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcch---hhhHHHhcccCCCh-------------------------
Confidence 579999999999999999886 679999998775431 22111111000000
Q ss_pred CCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEe--------cCCcEEecCEEEEeeccCcCcc
Q psy1545 213 GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL--------TNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 213 ~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~--------~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
.++. ..+.+.++..+++++.+ +|++|+.+++ .+.+.. ++|.++++|.+|+|+|.+|+..
T Consensus 62 -~~~~--~~~~~~~~~~~~~~i~~-~V~~Id~~~~---~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~ 128 (424)
T PTZ00318 62 -RSIC--EPVRPALAKLPNRYLRA-VVYDVDFEEK---RVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF 128 (424)
T ss_pred -HHhH--HHHHHHhccCCeEEEEE-EEEEEEcCCC---EEEEecccccccccCCceEecCCEEEECCCcccCCC
Confidence 0000 00112234467888765 8999987653 233311 4567899999999999998754
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00013 Score=67.44 Aligned_cols=196 Identities=13% Similarity=0.094 Sum_probs=100.4
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc------cCCc-chhhhHHHhhccCCCChhhhhhhcccccC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF------LDPG-AAEFFQDSINKTNTAKPETIFKRMRYNTG 205 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~------~d~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 205 (454)
...++|||+|+.|+-+|..++ |.+|.++++.+.+-... ++.. +.....+.+. +..+.+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~------------~~gv~~~ 92 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILD------------EFGIRYK 92 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHH------------HCCCCce
Confidence 457999999999999999886 89999999876543211 0100 0011111111 1111111
Q ss_pred CCCCC--CCC-CccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec-----------CCcEEecCEEEEee
Q psy1545 206 GEKGP--SLG-PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT-----------NGHTHACDIVVSAI 271 (454)
Q Consensus 206 ~~~~~--~l~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~-----------~g~~~~~D~vi~a~ 271 (454)
..... .+. .++... +.+..++.|++++.++.+..+..+++ +....+... +..++.++.||.|+
T Consensus 93 ~~~~g~~~vd~~~l~~~--L~~~A~~~Gv~I~~~t~V~dl~~~~~-g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~AT 169 (257)
T PRK04176 93 EVEDGLYVADSVEAAAK--LAAAAIDAGAKIFNGVSVEDVILRED-PRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDAT 169 (257)
T ss_pred eecCcceeccHHHHHHH--HHHHHHHcCCEEEcCceeceeeEeCC-CcEEEEEEccccccccCCCCCcEEEEcCEEEEEe
Confidence 10000 000 011111 23334668999999999999875432 123333322 22579999999999
Q ss_pred ccCcCccccc-CC---CCceecCCCceEe--------ccccccccCceeecCcccccCCccccchhhccChHHHHHHHHH
Q psy1545 272 GVVPNSNIQV-HG---TPFELAPDCGIGV--------NELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTY 339 (454)
Q Consensus 272 G~~p~~~~~~-~~---~~l~~~~~g~i~v--------d~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~ 339 (454)
|........+ +. .+..+...+.... +..- --+|++|++|=.+..-. ..+ +.-|..-.=...|+.
T Consensus 170 G~~a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~-~~~~g~~~~gm~~~~~~-~~~--rmg~~fg~m~~sg~~ 245 (257)
T PRK04176 170 GHDAEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVENTG-EVYPGLYVAGMAANAVH-GLP--RMGPIFGGMLLSGKK 245 (257)
T ss_pred CCCcHHHHHHHHHcCCcccccCCccccccCchHHHHHhcCC-eEcCCEEEeehhhhhhc-CCC--ccCchhHhHHHhHHH
Confidence 9765432011 10 1111111111222 1111 12699999998775421 111 111111222456888
Q ss_pred HHhhhcCCCC
Q psy1545 340 AAKCMVGAVK 349 (454)
Q Consensus 340 aa~~i~~~~~ 349 (454)
||+-++.+++
T Consensus 246 ~a~~~~~~~~ 255 (257)
T PRK04176 246 VAELILEKLK 255 (257)
T ss_pred HHHHHHHHhh
Confidence 8888876543
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.6e-05 Score=78.23 Aligned_cols=112 Identities=15% Similarity=0.189 Sum_probs=71.5
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (454)
...++|||||+.|+.+|..++ |.+|+++... +-....+... +. .+ ..+...-
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~---~~-~~--------------------~~~~~~~ 264 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMG---IE-NF--------------------ISVPETE 264 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCc---cc-cc--------------------CCCCCCC
Confidence 358999999999999999986 9999999653 1111000000 00 00 0000000
Q ss_pred CCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 213 GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 213 ~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
++++... +.+.+++.|++++.++.+.++...++ .+.+.+++|.++.+|.||+|+|.+|..
T Consensus 265 ~~~l~~~--l~~~~~~~gv~i~~~~~V~~I~~~~~---~~~V~~~~g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 265 GPKLAAA--LEEHVKEYDVDIMNLQRASKLEPAAG---LIEVELANGAVLKAKTVILATGARWRN 324 (517)
T ss_pred HHHHHHH--HHHHHHHCCCEEEcCCEEEEEEecCC---eEEEEECCCCEEEcCEEEECCCCCcCC
Confidence 1111111 23334557999999999999987642 467778888889999999999998754
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.3e-05 Score=70.32 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+|+|||+|+||++||..|++. |.+|+|+||+.-
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~a--G~~vtV~eKg~G 35 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREA--GREVTVFEKGRG 35 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhc--CcEEEEEEcCCC
Confidence 4699999999999999999998 999999999853
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.9e-05 Score=75.71 Aligned_cols=95 Identities=20% Similarity=0.279 Sum_probs=72.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||+|+.|+.+|..|+++ |++|+++|+.+........ ........+.+.. +++++.+ .+..++
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~--G~~v~l~e~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~~~~~i~ 205 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKR--GKKVTLIEAADRLGGQLLD---------PEVAEELAELLEKYGVELLLGTKVVGVE 205 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHc--CCeEEEEEcccccchhhhh---------HHHHHHHHHHHHHCCcEEEeCCceEEEE
Confidence 4799999999999999999999 8999999999876432211 1233334445555 8998654 888888
Q ss_pred CcccE-----EEeccCcEEEecEEEEecCCCCC
Q psy1545 81 PRVNC-----VITEKQNRIKYKTLCICTGASPR 108 (454)
Q Consensus 81 ~~~~~-----v~~~~g~~i~~d~lviAtG~~p~ 108 (454)
..... +...++..+++|.+++++|.+|.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 206 GKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred cccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 76542 45557789999999999999885
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.7e-05 Score=82.00 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=70.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. |.+|+|+++.+.+.. ..+ +.+......+.+.+ +|+++.+ .+..+.
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~--G~~VtvVe~~~~ll~--------~~l-d~~~~~~l~~~L~~~GV~v~~~~~v~~I~ 214 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNL--GVETHVIEFAPMLMA--------EQL-DQMGGEQLRRKIESMGVRVHTSKNTLEIV 214 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEeccccchh--------hhc-CHHHHHHHHHHHHHCCCEEEcCCeEEEEE
Confidence 3689999999999999999998 889999998764310 001 11222334455656 9999865 777786
Q ss_pred Ccc----cEEEeccCcEEEecEEEEecCCCCCC
Q psy1545 81 PRV----NCVITEKQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~~----~~v~~~~g~~i~~d~lviAtG~~p~~ 109 (454)
.+. ..+.+.+|+.+.+|.+|+|+|.+|+.
T Consensus 215 ~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 215 QEGVEARKTMRFADGSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred ecCCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence 431 24667788999999999999999875
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.3e-05 Score=76.20 Aligned_cols=96 Identities=14% Similarity=0.159 Sum_probs=68.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..+++. |.+|+++++.+.+. +. . +.+......+.+.+ +++++.+ ++..+.
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~--G~~Vtlie~~~~il-----~~----~-d~~~~~~l~~~l~~~gV~i~~~~~V~~i~ 242 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRL--GAQVTVVEYLDRIC-----PG----T-DTETAKTLQKALTKQGMKFKLGSKVTGAT 242 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCCCCC-----CC----C-CHHHHHHHHHHHHhcCCEEEECcEEEEEE
Confidence 4699999999999999999998 89999999876531 11 1 11233344455666 9999855 888887
Q ss_pred Cccc--EEEec---c--CcEEEecEEEEecCCCCCCC
Q psy1545 81 PRVN--CVITE---K--QNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~~--~v~~~---~--g~~i~~d~lviAtG~~p~~~ 110 (454)
.... .+.+. + ++.+.+|.+++|+|.+|+..
T Consensus 243 ~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 243 AGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred EcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence 5432 33332 2 35799999999999998764
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.7e-05 Score=75.40 Aligned_cols=105 Identities=13% Similarity=0.191 Sum_probs=69.4
Q ss_pred eEEEEcCchhHHHHHHHhc-----CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCC
Q psy1545 137 KIVVIGNGGIATELVHELS-----NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPS 211 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~-----g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (454)
+++|||||+.|+.+|..+. +.+|+++++.+.+. +.+.+...+......
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~---~~~~~~~~~~g~~~~------------------------ 53 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP---YSGMLPGMIAGHYSL------------------------ 53 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc---ccchhhHHHheeCCH------------------------
Confidence 5899999999999998883 67899999876532 122111111000000
Q ss_pred CCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 212 LGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 212 l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
.++. ....+.+++.||+++.+ .|+++...++ .|.+++|+++++|.+|+|||.+|+.+
T Consensus 54 --~~~~--~~~~~~~~~~gv~~~~~-~v~~id~~~~-----~V~~~~g~~~~yD~LviAtG~~~~~~ 110 (364)
T TIGR03169 54 --DEIR--IDLRRLARQAGARFVIA-EATGIDPDRR-----KVLLANRPPLSYDVLSLDVGSTTPLS 110 (364)
T ss_pred --HHhc--ccHHHHHHhcCCEEEEE-EEEEEecccC-----EEEECCCCcccccEEEEccCCCCCCC
Confidence 0000 00122234579999886 7889987652 57888888899999999999999765
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.8e-05 Score=73.38 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=69.8
Q ss_pred cEEEECCCHHHHHHHHHHhhcCC-----------CCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEE
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHP-----------GESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTV 71 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~-----------g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~ 71 (454)
+++|+|||+.|.-.|-+|+++.+ ..+|+|+|+.+..- +.++. .+.....+.+.+ +|++
T Consensus 157 ti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL-----p~~~~-----~l~~~a~~~L~~~GV~v 226 (405)
T COG1252 157 TIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL-----PMFPP-----KLSKYAERALEKLGVEV 226 (405)
T ss_pred EEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-----cCCCH-----HHHHHHHHHHHHCCCEE
Confidence 69999999999999999987511 24899999987652 22222 233334456666 9999
Q ss_pred Ecc-eEEEEeCcccEEEeccCc-EEEecEEEEecCCCCCC
Q psy1545 72 IVD-TVAAIDPRVNCVITEKQN-RIKYKTLCICTGASPRK 109 (454)
Q Consensus 72 ~~~-~v~~i~~~~~~v~~~~g~-~i~~d~lviAtG~~p~~ 109 (454)
+.+ .|+.++++. |++.+|+ +++++.+|-|+|.++..
T Consensus 227 ~l~~~Vt~v~~~~--v~~~~g~~~I~~~tvvWaaGv~a~~ 264 (405)
T COG1252 227 LLGTPVTEVTPDG--VTLKDGEEEIPADTVVWAAGVRASP 264 (405)
T ss_pred EcCCceEEECCCc--EEEccCCeeEecCEEEEcCCCcCCh
Confidence 755 999999876 6666676 59999999999987643
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.3e-05 Score=75.07 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=31.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR--GIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCcEEEEEcCCc
Confidence 4899999999999999999998 999999999864
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=8e-05 Score=75.02 Aligned_cols=95 Identities=21% Similarity=0.312 Sum_probs=68.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+..|..|++. +.+|+|+++.+.+. +.+ +.+......+.+.+ +++++.+ ++..++
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~--g~~Vtli~~~~~~l-----~~~-----~~~~~~~l~~~l~~~gV~v~~~~~v~~i~ 226 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANF--GSKVTILEAASLFL-----PRE-----DRDIADNIATILRDQGVDIILNAHVERIS 226 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCC-----CCc-----CHHHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 3699999999999999999998 89999999876431 111 12233334455666 9999854 888887
Q ss_pred CcccE--EEeccCcEEEecEEEEecCCCCCCC
Q psy1545 81 PRVNC--VITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~~~--v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
.++.. +..+++ ++.+|.+++|+|.+|+..
T Consensus 227 ~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 227 HHENQVQVHSEHA-QLAVDALLIASGRQPATA 257 (441)
T ss_pred EcCCEEEEEEcCC-eEEeCEEEEeecCCcCCC
Confidence 55443 333333 689999999999998764
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.3e-05 Score=75.89 Aligned_cols=96 Identities=17% Similarity=0.082 Sum_probs=69.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+|+++...+ +.+ +.+......+.+.+ +++++.+ .+..+.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~--G~~Vtli~~~~~l------~~~-----d~~~~~~l~~~l~~~GV~i~~~~~v~~v~ 249 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNEL--GFDVTVAVRSIPL------RGF-----DRQCSEKVVEYMKEQGTLFLEGVVPINIE 249 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCcEEEEEcCccc------ccC-----CHHHHHHHHHHHHHcCCEEEcCCeEEEEE
Confidence 3799999999999999999998 8899999764221 111 11233444555666 9999865 666665
Q ss_pred Ccc--cEEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRV--NCVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~--~~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
... ..+.+.+|+.+.+|.+++|+|.+|+...
T Consensus 250 ~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 250 KMDDKIKVLFSDGTTELFDTVLYATGRKPDIKG 282 (499)
T ss_pred EcCCeEEEEECCCCEEEcCEEEEeeCCCCCccc
Confidence 332 2455567888999999999999987653
|
|
| >KOG2665|consensus | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.5e-05 Score=71.36 Aligned_cols=39 Identities=21% Similarity=0.583 Sum_probs=35.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
.+|+||||||..|++.|.+|.-+.|+.+|.++|++..+.
T Consensus 48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 489999999999999999999888999999999987653
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.2e-05 Score=75.14 Aligned_cols=98 Identities=15% Similarity=0.227 Sum_probs=69.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcC-CCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLH-PGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAI 79 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i 79 (454)
.+++|||||+.|+.+|..+..+. .|.+|+|+++.+.+. +.+ +.+......+.+.+ +++++.+ .+..+
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-----~~~-----d~~~~~~l~~~L~~~GI~i~~~~~v~~i 257 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-----RGF-----DSTLRKELTKQLRANGINIMTNENPAKV 257 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-----ccc-----CHHHHHHHHHHHHHcCCEEEcCCEEEEE
Confidence 46999999999999997665431 178999999887541 111 12333444556666 9999865 78888
Q ss_pred eCc--c-cEEEeccCcEEEecEEEEecCCCCCCC
Q psy1545 80 DPR--V-NCVITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 80 ~~~--~-~~v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
... . ..+.+.+++++.+|.+++|+|.+|...
T Consensus 258 ~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 258 TLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred EEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence 643 1 345666777899999999999998764
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >KOG1336|consensus | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.4e-05 Score=72.08 Aligned_cols=99 Identities=14% Similarity=0.269 Sum_probs=76.5
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEeC
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAIDP 81 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~~ 81 (454)
.||++|+|..|+-+|..|+.. ..+|++|++++.+- .. +-...+.+....+|.+ +++++.+ .+..++.
T Consensus 215 ~vV~vG~G~ig~Evaa~l~~~--~~~VT~V~~e~~~~--------~~-lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~ 283 (478)
T KOG1336|consen 215 KVVCVGGGFIGMEVAAALVSK--AKSVTVVFPEPWLL--------PR-LFGPSIGQFYEDYYENKGVKFYLGTVVSSLEG 283 (478)
T ss_pred eEEEECchHHHHHHHHHHHhc--CceEEEEccCccch--------hh-hhhHHHHHHHHHHHHhcCeEEEEecceeeccc
Confidence 599999999999999999998 89999999987642 11 2223455566677777 9999866 5566654
Q ss_pred cc--c--EEEeccCcEEEecEEEEecCCCCCCCCCC
Q psy1545 82 RV--N--CVITEKQNRIKYKTLCICTGASPRKIWYS 113 (454)
Q Consensus 82 ~~--~--~v~~~~g~~i~~d~lviAtG~~p~~~~~~ 113 (454)
+. + .|.+.+|+++.+|-|++.+|++|......
T Consensus 284 ~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 284 NSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred CCCCcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence 43 2 56778999999999999999999876543
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.3e-05 Score=81.47 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=38.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKT 45 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~ 45 (454)
.+|+||||||++||+||..|++. |++|+|+|+++..+++.+.
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~--G~~V~VlE~~~~~GG~a~t 44 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARA--GLKVTVLEKNDRVGGRART 44 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhC--CCEEEEEEecCCCCcceEE
Confidence 58999999999999999999998 9999999999988875443
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00013 Score=75.96 Aligned_cols=95 Identities=16% Similarity=0.235 Sum_probs=68.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+|+++.+.+. .+ +.+......+.+.+ +++++.+ .+..++
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~--g~~Vtli~~~~~l~------~~-----d~~~~~~l~~~l~~~gI~i~~~~~v~~i~ 337 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARL--GSKVTILARSTLFF------RE-----DPAIGEAVTAAFRAEGIEVLEHTQASQVA 337 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCEEEEEecCcccc------cc-----CHHHHHHHHHHHHHCCCEEEcCCEEEEEE
Confidence 4799999999999999999998 88999998754221 11 12233444555666 9999854 888886
Q ss_pred CcccE--EEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVNC--VITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~~--v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
.+... +.+.+ ..+.+|.+++|+|.+|+...
T Consensus 338 ~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~~~ 369 (561)
T PRK13748 338 HVDGEFVLTTGH-GELRADKLLVATGRAPNTRS 369 (561)
T ss_pred ecCCEEEEEecC-CeEEeCEEEEccCCCcCCCC
Confidence 54333 33333 47999999999999988753
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00014 Score=73.90 Aligned_cols=95 Identities=19% Similarity=0.238 Sum_probs=67.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+..|..|++. +.+|+++++...+. .+ +.+......+.+.+ +++++.+ ++..++
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~--G~~Vtlv~~~~~l~------~~-----d~~~~~~l~~~L~~~GV~i~~~~~V~~i~ 255 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARL--GSRVTILARSTLLF------RE-----DPLLGETLTACFEKEGIEVLNNTQASLVE 255 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCEEEEEEcCCCCC------cc-----hHHHHHHHHHHHHhCCCEEEcCcEEEEEE
Confidence 4699999999999999999998 88999998753221 11 11233344455656 9999855 787776
Q ss_pred Cccc--EEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVN--CVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~--~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
.... .+...+ .++.+|.+++|+|.+|+...
T Consensus 256 ~~~~~~~v~~~~-g~i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 256 HDDNGFVLTTGH-GELRAEKLLISTGRHANTHD 287 (479)
T ss_pred EeCCEEEEEEcC-CeEEeCEEEEccCCCCCccC
Confidence 4433 344433 46999999999999987653
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00014 Score=73.83 Aligned_cols=96 Identities=14% Similarity=0.116 Sum_probs=66.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++...+ +.+ +.+......+.+.+ +++++.+ .+..+.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~--G~~Vtli~~~~~l------~~~-----d~~~~~~l~~~L~~~gV~i~~~~~v~~v~ 247 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGI--GLDVTVMVRSILL------RGF-----DQDCANKVGEHMEEHGVKFKRQFVPIKVE 247 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHh--CCcEEEEEecccc------ccc-----CHHHHHHHHHHHHHcCCEEEeCceEEEEE
Confidence 3699999999999999999998 8899999864221 111 12233344455666 9999865 566665
Q ss_pred Ccc--cEEEeccC---cEEEecEEEEecCCCCCCCC
Q psy1545 81 PRV--NCVITEKQ---NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~--~~v~~~~g---~~i~~d~lviAtG~~p~~~~ 111 (454)
... ..+.+.++ +++.+|.+++|+|.+|....
T Consensus 248 ~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~ 283 (484)
T TIGR01438 248 QIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRK 283 (484)
T ss_pred EcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCc
Confidence 332 23444444 37999999999999887653
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.6e-05 Score=69.35 Aligned_cols=156 Identities=20% Similarity=0.249 Sum_probs=95.8
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhH-HHhhccCCCChhhhhhhcccccCCCCCCCCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQ-DSINKTNTAKPETIFKRMRYNTGGEKGPSLG 213 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 213 (454)
+++|||||+.|+.+|..|. +.+|+++++.+..... ...+..... ..... ...... .+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~-~~~----------- 61 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYN--SGCIPSPLLVEIAPH-----RHEFLP-ARL----------- 61 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHH--HSHHHHHHHHHHHHH-----HHHHHH-HHH-----------
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccc--ccccccccccccccc-----cccccc-ccc-----------
Confidence 6899999999999999997 8999999665432110 000000000 00000 000000 000
Q ss_pred CccccccccccCccCCceEEEeCceEEEEEcCCCC--ccceEE---EecCCcEEecCEEEEeeccCcCcccc--------
Q psy1545 214 PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDD--TCNAYV---KLTNGHTHACDIVVSAIGVVPNSNIQ-------- 280 (454)
Q Consensus 214 ~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~--~~~~~v---~~~~g~~~~~D~vi~a~G~~p~~~~~-------- 280 (454)
..+.+.+...+++++.++++.++...... .....+ ...++.++.+|.+|+|+|.+|+...+
T Consensus 62 ------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~ 135 (201)
T PF07992_consen 62 ------FKLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYF 135 (201)
T ss_dssp ------GHHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECB
T ss_pred ------cccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccc
Confidence 01122234589999999999999876520 001112 23345789999999999998763300
Q ss_pred ---------------------------c-CCCCceecCCCceEeccccccccCceeecCcccccC
Q psy1545 281 ---------------------------V-HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPS 317 (454)
Q Consensus 281 ---------------------------~-~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~ 317 (454)
+ +..+++++++|++.||+++||+.|||||+|||++.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~v~VvG~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 136 LRGVDDAQRFLELLESPKRVAVVGTEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp TTSEEHHHHHHTHSSTTSEEEEESTTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 0 222456678999999999999999999999999753
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00015 Score=71.79 Aligned_cols=140 Identities=14% Similarity=0.069 Sum_probs=77.0
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCc--chhhhHHHhhccCCCCh-hh--hhhhcccccC-C
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPG--AAEFFQDSINKTNTAKP-ET--IFKRMRYNTG-G 206 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~--~~~~~~~~l~~~~~~~~-~~--~~~~~~~~~~-~ 206 (454)
..+|+|||||+.|+.+|..|. |.+|+++++.+..... .... +.....+.|.+....+. .. ......+... +
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~-~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDG-RGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCC-CCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 578999999999999999997 9999999998754321 0000 11222222222100000 00 0000000000 0
Q ss_pred C-CCCCCCCc-cccccccccCc--cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 207 E-KGPSLGPD-WHTQVNLHGSS--RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 207 ~-~~~~l~~~-~~~~~~~~~~l--~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
. +.....+. ...+-.+.+.| .-.+++++.++.+++++.+++ .+.+.+++|+++.+|+||.|-|.+....
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~---~v~v~~~~g~~~~ad~vIgADG~~S~vR 157 (386)
T PRK07236 85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGD---RVTARFADGRRETADLLVGADGGRSTVR 157 (386)
T ss_pred CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCC---eEEEEECCCCEEEeCEEEECCCCCchHH
Confidence 0 00000000 00000011111 113578999999999987653 5778899999999999999999877653
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00013 Score=74.96 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=68.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+..|..+++. |.+|+++++.+.+. +. . +.+......+.+.+ +++++.+ .+..++
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~--G~~Vtli~~~~~il-----~~----~-d~~i~~~l~~~L~~~GV~i~~~~~V~~I~ 305 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRL--GAESYIFARGNRLL-----RK----F-DETIINELENDMKKNNINIITHANVEEIE 305 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCcEEEEEeccccc-----cc----C-CHHHHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence 4699999999999999999998 89999999876431 11 1 12233344455666 9998755 788887
Q ss_pred Cccc---EEEecc-CcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVN---CVITEK-QNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~---~v~~~~-g~~i~~d~lviAtG~~p~~~~ 111 (454)
..+. .+...+ ++++.+|.+++|+|.+|....
T Consensus 306 ~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~ 340 (561)
T PTZ00058 306 KVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTED 340 (561)
T ss_pred ecCCCcEEEEECCCCEEEECCEEEECcCCCCCccc
Confidence 5421 233333 357999999999999887643
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00019 Score=66.22 Aligned_cols=194 Identities=13% Similarity=0.131 Sum_probs=99.7
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCc-------chhhhHHHhhccCCCChhhhhhhcccccC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPG-------AAEFFQDSINKTNTAKPETIFKRMRYNTG 205 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 205 (454)
.-.++|||+|+.|+-+|..++ |.+|.++++...+-....... +.......+. +..+.+.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~------------~~gi~~~ 88 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILD------------EFGIRYE 88 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHH------------HCCCCee
Confidence 468999999999999999887 899999999876532111000 0000111111 1111110
Q ss_pred CCCCCCC----CCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec-----------CCcEEecCEEEEe
Q psy1545 206 GEKGPSL----GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT-----------NGHTHACDIVVSA 270 (454)
Q Consensus 206 ~~~~~~l----~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~-----------~g~~~~~D~vi~a 270 (454)
. ..... ..++... +.+...+.|++++.++.+.++..+++..+...+... +..+++++.||.|
T Consensus 89 ~-~~~g~~~~~~~el~~~--L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdA 165 (254)
T TIGR00292 89 D-EGDGYVVADSAEFIST--LASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDA 165 (254)
T ss_pred e-ccCceEEeeHHHHHHH--HHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEe
Confidence 0 00000 0111111 223345689999999999998765421123334432 1247899999999
Q ss_pred eccCcCcccccC-CCCceecC-----CCceEecc-------ccccccCceeecCcccccCCccccchhhccChHHH-HHH
Q psy1545 271 IGVVPNSNIQVH-GTPFELAP-----DCGIGVNE-------LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQA-KHM 336 (454)
Q Consensus 271 ~G~~p~~~~~~~-~~~l~~~~-----~g~i~vd~-------~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A-~~~ 336 (454)
||.......++. ..++.... .+....+. +-+--+|++|++|=.+... ...+ + +.-..-+ ...
T Consensus 166 TG~~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~-~~~~--r-mgp~fg~m~~s 241 (254)
T TIGR00292 166 TGHDAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAV-HGLP--R-MGPIFGGMLLS 241 (254)
T ss_pred ecCCchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhh-cCCC--C-cCchHHHHHHh
Confidence 997654321221 11111111 11122221 1112379999999876532 1111 1 1112223 356
Q ss_pred HHHHHhhhcCC
Q psy1545 337 GTYAAKCMVGA 347 (454)
Q Consensus 337 g~~aa~~i~~~ 347 (454)
|+.||+-++.+
T Consensus 242 g~~~a~~~~~~ 252 (254)
T TIGR00292 242 GKHVAEQILEK 252 (254)
T ss_pred hHHHHHHHHHH
Confidence 88888877654
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00011 Score=75.77 Aligned_cols=58 Identities=22% Similarity=0.223 Sum_probs=39.9
Q ss_pred cCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 289 APDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 289 ~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
...|+|.||..+||++||+||+|+|++.. ...+... -.....|...|+.|+++++...
T Consensus 346 ~t~GGi~vd~~~~t~IpGLyAaGE~~gg~-hG~~rlg-G~sl~~a~v~Gr~Ag~~aa~~~ 403 (543)
T PRK06263 346 HFMGGIRINEDCETNIPGLFACGEVAGGV-HGANRLG-GNALADTQVFGAIAGKSAAKNA 403 (543)
T ss_pred EecCCEEECCCCcccCCCeEeccccccCC-CCCCccc-hhhhhhhHHHHHHHHHHHHHHh
Confidence 34688999999999999999999997532 2211100 0112357788999999887543
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00024 Score=72.15 Aligned_cols=97 Identities=19% Similarity=0.309 Sum_probs=65.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhcCcEEEcc-eEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEGLCTVIVD-TVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~v~~i~~ 81 (454)
.+++|||||+.|+.+|..+++. |.+|+|+++.+.+. +.+ +.+......+.+.+.++++.+ .+..++.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~--G~~Vtlv~~~~~il-----~~~-----d~~~~~~~~~~l~~~v~i~~~~~v~~i~~ 242 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRL--GSEVDVVEMFDQVI-----PAA-----DKDIVKVFTKRIKKQFNIMLETKVTAVEA 242 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCC-----CcC-----CHHHHHHHHHHHhhceEEEcCCEEEEEEE
Confidence 4799999999999999999998 89999999887531 111 112222233334334676644 7777764
Q ss_pred cc--cEEEecc--C--cEEEecEEEEecCCCCCCCC
Q psy1545 82 RV--NCVITEK--Q--NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 82 ~~--~~v~~~~--g--~~i~~d~lviAtG~~p~~~~ 111 (454)
.. ..+.+.+ + +++.+|.+|+|+|.+|....
T Consensus 243 ~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~ 278 (471)
T PRK06467 243 KEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKL 278 (471)
T ss_pred cCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCc
Confidence 33 2344333 2 36999999999999988753
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00012 Score=71.89 Aligned_cols=35 Identities=29% Similarity=0.274 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
.+|+|||||++|+.+|..|++. |.+|+|+|+.+..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~--G~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQA--GVPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhC--CCcEEEEeccccc
Confidence 3799999999999999999998 9999999987653
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00023 Score=72.20 Aligned_cols=97 Identities=16% Similarity=0.231 Sum_probs=66.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhcCcEEEc-ceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEGLCTVIV-DTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~~i~~ 81 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.... .+ +.+......+.+.+.++++. .++..++.
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~--g~~Vtli~~~~~~l~-----~~-----d~~~~~~~~~~l~~~I~i~~~~~v~~i~~ 237 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRL--GVKVTVFERGDRILP-----LE-----DPEVSKQAQKILSKEFKIKLGAKVTSVEK 237 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCc-----ch-----hHHHHHHHHHHHhhccEEEcCCEEEEEEE
Confidence 4799999999999999999998 889999998875421 00 11222222333332477764 47888865
Q ss_pred ccc-EEEe--ccC--cEEEecEEEEecCCCCCCCC
Q psy1545 82 RVN-CVIT--EKQ--NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 82 ~~~-~v~~--~~g--~~i~~d~lviAtG~~p~~~~ 111 (454)
... .+.+ .++ .++.+|.+++|+|.+|+...
T Consensus 238 ~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 238 SGDEKVEELEKGGKTETIEADYVLVATGRRPNTDG 272 (460)
T ss_pred cCCceEEEEEcCCceEEEEeCEEEEccCCccCCCC
Confidence 432 3332 223 47999999999999988764
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=8.6e-05 Score=75.09 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=31.2
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
.+++++|||||+.|+++|..|. |.+|+++++.+.+
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 3689999999999999999886 8999999987765
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00026 Score=68.14 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=67.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEc-ceEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIV-DTVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~-~~v~~i~ 80 (454)
.+++|||+|..|+.+|..|++. +.+|+++++.+.+.. .........+.+.+ +++++. ..++.+.
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~--~~~Vtlv~~~~~~~~------------~~~~~~~~~~~l~~~gV~i~~~~~v~~v~ 212 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNI--ASEVHLIHRRDGFRA------------EKILIKRLMDKVENGNIILHTNRTLEEVT 212 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhh--CCEEEEEEECCccCC------------CHHHHHHHHhhccCCCeEEEeCCEEEEEE
Confidence 4799999999999999999998 889999998764210 01122333445555 899875 4788887
Q ss_pred Cccc---EEEeccC------cEEEecEEEEecCCCCCCC
Q psy1545 81 PRVN---CVITEKQ------NRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~~---~v~~~~g------~~i~~d~lviAtG~~p~~~ 110 (454)
.+.. .|.+.++ +++.+|.|++++|.+|...
T Consensus 213 ~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~ 251 (321)
T PRK10262 213 GDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA 251 (321)
T ss_pred cCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChh
Confidence 6542 3444322 3799999999999988654
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.6e-05 Score=77.79 Aligned_cols=40 Identities=33% Similarity=0.395 Sum_probs=35.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
++|+|||||+|||+||+.|++.+++++|+|+|+++.+++.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr 40 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGK 40 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcce
Confidence 3799999999999999999998445899999999887754
|
|
| >KOG0029|consensus | Back alignment and domain information |
|---|
Probab=97.70 E-value=3.8e-05 Score=77.47 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=35.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
+.+|||||||+|||+||+.|.+. |.+|+|+|..+..++
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~--G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 15 KKKVIVIGAGLAGLSAARQLQDF--GFDVLVLEARDRVGG 52 (501)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc--CCceEEEeccCCcCc
Confidence 46899999999999999999998 999999999988765
|
|
| >KOG2311|consensus | Back alignment and domain information |
|---|
Probab=97.69 E-value=9.2e-05 Score=71.42 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=29.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS 36 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~ 36 (454)
+|||||||||.||..||...++. |.+.+|+..+
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~--Ga~TlLlT~~ 60 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARL--GARTLLLTHN 60 (679)
T ss_pred cccEEEECCCccchHHHHHHHhc--CCceEEeecc
Confidence 47999999999999999999999 8888888775
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00038 Score=69.08 Aligned_cols=140 Identities=15% Similarity=0.184 Sum_probs=78.2
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc----ccCCcchhhhHHHhhccCCCChhhhhhhccccc--CC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT----FLDPGAAEFFQDSINKTNTAKPETIFKRMRYNT--GG 206 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~----~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~ 206 (454)
+.+|+|||||+.|+-+|..|. |.+|+++++.+.+... .+.+...+.+...-......+.........+.. .+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 678999999999999999996 9999999998764321 122222222211100000000000000000100 00
Q ss_pred -C-----CC----CCCCCccc--ccc----ccccCccCC-ceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEE
Q psy1545 207 -E-----KG----PSLGPDWH--TQV----NLHGSSRDT-KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVS 269 (454)
Q Consensus 207 -~-----~~----~~l~~~~~--~~~----~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~ 269 (454)
. .. ..++..+. .+. .+.+.+.+. +++++.++.+++++.+++ .+.+.+.+|+++.+|+||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~---~v~v~~~~g~~~~ad~vV~ 160 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGD---GVTVFDQQGNRWTGDALIG 160 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCC---ceEEEEcCCCEEecCEEEE
Confidence 0 00 00111100 000 022323333 599999999999987553 4678888888899999999
Q ss_pred eeccCcCc
Q psy1545 270 AIGVVPNS 277 (454)
Q Consensus 270 a~G~~p~~ 277 (454)
|.|.....
T Consensus 161 AdG~~S~~ 168 (396)
T PRK08163 161 CDGVKSVV 168 (396)
T ss_pred CCCcChHH
Confidence 99998755
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00011 Score=71.67 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=32.1
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS 169 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~ 169 (454)
.+++++|||+|+.|+++|..|. |.+|+++++.+.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g 54 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPG 54 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 4789999999999999999886 89999999887654
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00037 Score=72.87 Aligned_cols=97 Identities=16% Similarity=0.149 Sum_probs=67.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHH-hc-CcEEEcc-eEEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKF-EG-LCTVIVD-TVAAI 79 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~i~~~~~-~v~~i 79 (454)
.+++|||||+.|+..|..+++. +.+|+|+++.+.+.. . + +.+......+.+ .+ +|+++.+ .+..+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~--G~eVTLIe~~~~ll~-----~----~-d~eis~~l~~~ll~~~GV~I~~~~~V~~I 380 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTAL--GSEVVSFEYSPQLLP-----L----L-DADVAKYFERVFLKSKPVRVHLNTLIEYV 380 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhC--CCeEEEEeccCcccc-----c----C-CHHHHHHHHHHHhhcCCcEEEcCCEEEEE
Confidence 4699999999999999999998 889999999875421 1 1 112223333333 34 8999755 88888
Q ss_pred eCcc--c--EEEecc-------C--------cEEEecEEEEecCCCCCCCC
Q psy1545 80 DPRV--N--CVITEK-------Q--------NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 80 ~~~~--~--~v~~~~-------g--------~~i~~d~lviAtG~~p~~~~ 111 (454)
+..+ . .+.+.+ + +++.+|.+++|+|.+|+...
T Consensus 381 ~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~ 431 (659)
T PTZ00153 381 RAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN 431 (659)
T ss_pred EecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence 6543 1 232211 1 26999999999999988754
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0003 Score=73.81 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++||+||||||+|+++|..|++. .|.+|+|||+.+
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~-~Gi~v~IiE~~~ 66 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAF-PDITTRIVERKP 66 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcC-CCCcEEEEEcCC
Confidence 47999999999999999999993 289999999874
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00017 Score=71.43 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=41.0
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
+..|++++.++++++++..++ .+.+.+++|+++.+|+||.|.|..+...
T Consensus 122 ~~~g~~i~~~~~v~~~~~~~~---~~~v~~~~g~~~~a~~vI~AdG~~S~vr 170 (392)
T PRK09126 122 QQDGIELLTGTRVTAVRTDDD---GAQVTLANGRRLTARLLVAADSRFSATR 170 (392)
T ss_pred hCCCcEEEcCCeEEEEEEcCC---eEEEEEcCCCEEEeCEEEEeCCCCchhh
Confidence 446999999999999986553 4678888998999999999999987654
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.6e-05 Score=77.05 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=35.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
++||+|||||++||+||+.|++. |.+|+|+|+++..++.
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~--g~~v~v~E~~~~~GG~ 42 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKR--GYPVTVLEADPVVGGI 42 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCCCce
Confidence 57999999999999999999998 8999999999887764
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=97.62 E-value=6.3e-05 Score=72.81 Aligned_cols=134 Identities=17% Similarity=0.211 Sum_probs=69.8
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEE-eCCCccccccCCcchhh----hHHHhhccCCC-----Chhhhhhhccccc
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVV-KDKHISATFLDPGAAEF----FQDSINKTNTA-----KPETIFKRMRYNT 204 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~-~~~~~~~~~~d~~~~~~----~~~~l~~~~~~-----~~~~~~~~~~~~~ 204 (454)
.|+|||||..|+|+|..++ |.+|.++. +.+.+..-...|.+... +.+.+...... +...+..++-...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 4899999999999999987 99999994 43443321223333322 33333220000 0000000111111
Q ss_pred CCCCCCCCCCccccccc---cccCc-cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc
Q psy1545 205 GGEKGPSLGPDWHTQVN---LHGSS-RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273 (454)
Q Consensus 205 ~~~~~~~l~~~~~~~~~---~~~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~ 273 (454)
..+-...+-..+.+..+ +.+.+ ...+++++. ..|+++..++ +....|.+.+|..+.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~e~--~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIVEN--GKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEECT--TEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEecC--CeEEEEEeCCCCEEecCEEEEeccc
Confidence 11111111001111110 23334 347899975 5899987665 4578899999999999999999999
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00046 Score=71.08 Aligned_cols=96 Identities=17% Similarity=0.128 Sum_probs=66.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+..|..|++. +.+|+|+++.+... +. + +.+......+.+.+ +|+++.+ .+..+.
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~--g~~Vtlv~~~~~il-----~~----~-d~~~~~~l~~~L~~~GV~i~~~~~v~~i~ 320 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGL--KSDVHVFIRQKKVL-----RG----F-DEEVRDFVAEQMSLRGIEFHTEESPQAII 320 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCeEEEEEeccccc-----cc----c-CHHHHHHHHHHHHHCCcEEEeCCEEEEEE
Confidence 4799999999999999999988 88999999876431 01 1 11222333455555 9999754 777775
Q ss_pred Cc-cc--EEEeccCcEEEecEEEEecCCCCCCC
Q psy1545 81 PR-VN--CVITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~-~~--~v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
.. .. .+.+.+++...+|.+++|+|.+|+..
T Consensus 321 ~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 321 KSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred EcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 32 22 33344444455899999999998764
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00045 Score=68.47 Aligned_cols=52 Identities=12% Similarity=0.261 Sum_probs=42.5
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
+.+++.|++++.++.+++++.+++ .+.+++++|+++.+|+||.|.|..+...
T Consensus 121 ~~~~~~gv~i~~~~~v~~i~~~~~---~v~v~~~~g~~~~a~~vV~AdG~~S~vr 172 (392)
T PRK08773 121 AALHAAGVQLHCPARVVALEQDAD---RVRLRLDDGRRLEAALAIAADGAASTLR 172 (392)
T ss_pred HHHHhCCCEEEcCCeEEEEEecCC---eEEEEECCCCEEEeCEEEEecCCCchHH
Confidence 334667999999999999987653 4668888888899999999999988543
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0005 Score=70.00 Aligned_cols=138 Identities=17% Similarity=0.210 Sum_probs=78.8
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc---cc--ccCCcchhhhHH-----HhhccCCCChhhh-hhhccc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS---AT--FLDPGAAEFFQD-----SINKTNTAKPETI-FKRMRY 202 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~---~~--~~d~~~~~~~~~-----~l~~~~~~~~~~~-~~~~~~ 202 (454)
..|+|||+|+.|+-+|..|. |.+|+++++.+... ++ .+.+...+.+.. .+.+. ....... .....+
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~-~~~~~~~~~~~~~~ 82 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQ-GQVAQVTGFAATRL 82 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhc-CCccccceeeeEec
Confidence 57999999999999999996 99999999876432 11 122222222211 11100 0000000 000001
Q ss_pred ccCCCCCC--CCCCcccc-cc--ccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 203 NTGGEKGP--SLGPDWHT-QV--NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 203 ~~~~~~~~--~l~~~~~~-~~--~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
... .... ..+-.+.+ .+ .+.+.+++.|++++.++++++++.+++ .+.+++.+|+++.+|+||.|.|.++..
T Consensus 83 ~~~-~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~---~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 83 DIS-DFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDT---GVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred ccc-cCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC---eEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 000 0000 01100110 00 123444667999999999999987653 466777788889999999999998754
Q ss_pred c
Q psy1545 278 N 278 (454)
Q Consensus 278 ~ 278 (454)
.
T Consensus 159 R 159 (488)
T PRK06834 159 R 159 (488)
T ss_pred H
Confidence 3
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00011 Score=80.11 Aligned_cols=99 Identities=12% Similarity=0.052 Sum_probs=63.3
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchh-hhHHHhhccCCCChhhhhhhcccccCCCCCC
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAE-FFQDSINKTNTAKPETIFKRMRYNTGGEKGP 210 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (454)
.+++|+|||+|+.|+.+|..|+ |.+||++++.+.+-.- +...+-. .+.+.+.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~-l~yGIP~~rlp~~vi~----------------------- 360 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGV-LRYGIPEFRLPNQLID----------------------- 360 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCce-EEccCCCCcChHHHHH-----------------------
Confidence 4799999999999999999986 9999999987654331 1100000 00000000
Q ss_pred CCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccC-cCc
Q psy1545 211 SLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVV-PNS 277 (454)
Q Consensus 211 ~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~-p~~ 277 (454)
...+.+++.||++++|+.+. ..+.+++.....+|.|++|||.. |..
T Consensus 361 ----------~~i~~l~~~Gv~f~~n~~vG-----------~dit~~~l~~~~yDAV~LAtGA~~pr~ 407 (944)
T PRK12779 361 ----------DVVEKIKLLGGRFVKNFVVG-----------KTATLEDLKAAGFWKIFVGTGAGLPTF 407 (944)
T ss_pred ----------HHHHHHHhhcCeEEEeEEec-----------cEEeHHHhccccCCEEEEeCCCCCCCc
Confidence 01223355899999997542 12455555556799999999995 543
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00035 Score=69.22 Aligned_cols=133 Identities=15% Similarity=0.212 Sum_probs=76.2
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc----cCCcchhhhH-----HHhhccCCCChhhhhhhcccccC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF----LDPGAAEFFQ-----DSINKTNTAKPETIFKRMRYNTG 205 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~----~d~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~ 205 (454)
+|+|||||+.|+-+|..|+ |.+|+++++.+.+.... +.+...+.+. +.+.+ .... .....+...
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~-~~~~----~~~~~~~~~ 76 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLRE-AGYQ----IEHVRSVDP 76 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHh-ccCC----ccceEEEcC
Confidence 7999999999999999987 99999999887643210 1111111111 11111 0000 000111000
Q ss_pred -CC---------CCCCCCCccc---cc-cc--cccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEE
Q psy1545 206 -GE---------KGPSLGPDWH---TQ-VN--LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVS 269 (454)
Q Consensus 206 -~~---------~~~~l~~~~~---~~-~~--~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~ 269 (454)
+. .....+..+. .. +. +.+.+ ..++++++++++++++.+++ .+.+.+++|+++++|+||-
T Consensus 77 ~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~---~v~v~~~~g~~~~~d~vIg 152 (391)
T PRK07588 77 TGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRD---GVRVTFERGTPRDFDLVIG 152 (391)
T ss_pred CCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCC---eEEEEECCCCEEEeCEEEE
Confidence 00 0011111110 00 00 11222 34799999999999987653 5678889998899999999
Q ss_pred eeccCcCcc
Q psy1545 270 AIGVVPNSN 278 (454)
Q Consensus 270 a~G~~p~~~ 278 (454)
|.|.+....
T Consensus 153 ADG~~S~vR 161 (391)
T PRK07588 153 ADGLHSHVR 161 (391)
T ss_pred CCCCCccch
Confidence 999977654
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00022 Score=70.98 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=42.5
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
+.+++.|++++.++++.+++.+++ .+.+.+++|+++.+|+||.|.|......
T Consensus 120 ~~~~~~gv~v~~~~~v~~i~~~~~---~v~v~~~~g~~~~a~~vVgAdG~~S~vR 171 (405)
T PRK05714 120 ERLHDSDIGLLANARLEQMRRSGD---DWLLTLADGRQLRAPLVVAADGANSAVR 171 (405)
T ss_pred HHHhcCCCEEEcCCEEEEEEEcCC---eEEEEECCCCEEEeCEEEEecCCCchhH
Confidence 344567999999999999987653 4678888998899999999999977553
|
|
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.58 E-value=7.1e-05 Score=75.92 Aligned_cols=40 Identities=33% Similarity=0.357 Sum_probs=35.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCC--CCeEEEECCCCccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHP--GESIGLVTPSGIVKAV 42 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~--g~~v~lie~~~~~~~~ 42 (454)
+||+|||||++||+||+.|++..+ |.+|+|+|+++..++.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~ 44 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGK 44 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcce
Confidence 689999999999999999999755 8899999999887654
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00048 Score=67.74 Aligned_cols=138 Identities=17% Similarity=0.177 Sum_probs=74.6
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc----ccCCcchhhhHHH-hhccCCCChhhhhhhcccccC-CCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT----FLDPGAAEFFQDS-INKTNTAKPETIFKRMRYNTG-GEK 208 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~----~~d~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~-~~~ 208 (454)
+|+|||||+.|+-+|..|+ |.+|+++++.+.+... .+.+...+.+... +.+.-..... ......+... +..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~-~~~~~~~~~~~g~~ 80 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQ-ILSTMNLLDDKGTL 80 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCC-cccceeEEcCCCCE
Confidence 7999999999999999996 9999999988765321 1122222222110 0000000000 0000001000 000
Q ss_pred -C-CCC--CCc-c-ccccccccCc--cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 209 -G-PSL--GPD-W-HTQVNLHGSS--RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 209 -~-~~l--~~~-~-~~~~~~~~~l--~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
. ..+ .+. + -.+-.+.+.| .-.+.++++++++++++.+++ .+.+.+++|+++.+|+||-|-|.+....
T Consensus 81 ~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~---~v~v~~~~g~~~~~~~vigadG~~S~vR 155 (373)
T PRK06753 81 LNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETD---KVTIHFADGESEAFDLCIGADGIHSKVR 155 (373)
T ss_pred EeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCC---cEEEEECCCCEEecCEEEECCCcchHHH
Confidence 0 000 000 0 0011111222 112467999999999986543 5778889999999999999999876554
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=97.58 E-value=7.1e-05 Score=73.16 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=33.2
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
|+.||+|||||++|+.+|..|++. |.+|+|+|+.+..
T Consensus 1 ~~~dVvVIGGGlAGleAAlaLAr~--Gl~V~LiE~rp~~ 37 (436)
T PRK05335 1 MMKPVNVIGAGLAGSEAAWQLAKR--GVPVELYEMRPVK 37 (436)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC--CCcEEEEEccCcc
Confidence 667999999999999999999998 9999999976543
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00046 Score=65.21 Aligned_cols=136 Identities=12% Similarity=0.104 Sum_probs=71.6
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCC--CCCCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGE--KGPSL 212 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~l 212 (454)
.|+|||||+.|+-+|..|+ |.+|+++++++..........+.....+.+.......... .....+..... .....
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNL-VRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhh-eeeEEEEcCCCcEEEecc
Confidence 4899999999999999986 9999999988653221011111111111111100000000 00000000000 00000
Q ss_pred -CCcc--ccc--c--ccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC-CcEEecCEEEEeeccCcC
Q psy1545 213 -GPDW--HTQ--V--NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN-GHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 213 -~~~~--~~~--~--~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~-g~~~~~D~vi~a~G~~p~ 276 (454)
.+.. ..+ + .+.+..++.|++++.+++++++..+++ .+.+.+++ +.++++|+||.|+|....
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD---RVVVIVRGGEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC---EEEEEEcCccEEEEeCEEEECCCcchH
Confidence 0000 011 0 123344667999999999999876553 34454443 467999999999998753
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=97.57 E-value=8.6e-05 Score=72.28 Aligned_cols=37 Identities=27% Similarity=0.531 Sum_probs=33.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
+|++|||||++|+++|..|++. |.+|+|+|+.+..++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~--G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL--NKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCCCCC
Confidence 7999999999999999999987 899999999877665
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00036 Score=71.56 Aligned_cols=133 Identities=19% Similarity=0.264 Sum_probs=75.6
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc----ccCCcchhhhHH-----HhhccCCCChhhhhhhccccc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT----FLDPGAAEFFQD-----SINKTNTAKPETIFKRMRYNT 204 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~----~~d~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~ 204 (454)
-.|+|||+|+.|+-+|..|. |.+|+++++.+.+... .+.+...+.+.+ .+.+.... .....+..
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~-----~~~~~~~~ 78 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGL-----YPPMRIYR 78 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCcc-----ccceeEEe
Confidence 47999999999999999997 9999999998765331 122222222221 11100000 00000000
Q ss_pred C-CC-----C----CC----CCCCc-cccc--c--ccccCccCCceEEEeCceEEEEEcCCCCccceEEEe---cCCcEE
Q psy1545 205 G-GE-----K----GP----SLGPD-WHTQ--V--NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL---TNGHTH 262 (454)
Q Consensus 205 ~-~~-----~----~~----~l~~~-~~~~--~--~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~---~~g~~~ 262 (454)
. .. + .. ..... ...+ + .+.+.+++.|++++.++++++++.+++ .+.+.+ .+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~---~v~v~~~~~~~~~~i 155 (502)
T PRK06184 79 DDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDAD---GVTARVAGPAGEETV 155 (502)
T ss_pred CCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCC---cEEEEEEeCCCeEEE
Confidence 0 00 0 00 00000 0001 0 133445567999999999999987653 355555 556789
Q ss_pred ecCEEEEeeccCcC
Q psy1545 263 ACDIVVSAIGVVPN 276 (454)
Q Consensus 263 ~~D~vi~a~G~~p~ 276 (454)
.+|+||.|.|.+..
T Consensus 156 ~a~~vVgADG~~S~ 169 (502)
T PRK06184 156 RARYLVGADGGRSF 169 (502)
T ss_pred EeCEEEECCCCchH
Confidence 99999999998753
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00023 Score=76.83 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=30.7
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
+++|+|||||+.|+.+|..|+ |.+|+++++.+.+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA 574 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 679999999999999999997 9999999987654
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=8.9e-05 Score=75.84 Aligned_cols=39 Identities=31% Similarity=0.466 Sum_probs=35.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
++||+|||||..|+++|+.|+++ |.+|+|+|++++..+.
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~r--Gl~V~LvEk~d~~~Gt 44 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGR--GLSVLLCEQDDLASAT 44 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC--CCeEEEEecCCCCCCc
Confidence 48999999999999999999998 9999999998775443
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=8.1e-05 Score=73.34 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=36.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK 44 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~ 44 (454)
++|+|+|||.|||+||++|++. |++|+|+|+.+..++...
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~--g~~vt~~ea~~~~GGk~~ 40 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA--GYDVTLYEARDRLGGKVA 40 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC--CCceEEEeccCccCceee
Confidence 4799999999999999999999 999999999999876443
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00047 Score=68.24 Aligned_cols=143 Identities=19% Similarity=0.186 Sum_probs=79.6
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc----ccCCcchhhhHHH-hhccCCCChhhhhhhcccccCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT----FLDPGAAEFFQDS-INKTNTAKPETIFKRMRYNTGGE 207 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~----~~d~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~ 207 (454)
..+|+|||||+.|+-+|..|+ |.+|+++++.+..... .+.+...+.+.+. +.+...+..........+...+.
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 84 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE 84 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence 358999999999999999997 9999999988765321 1223222322211 00000000000000011110000
Q ss_pred ------CCC--CCCCcc-ccccc----cccCc-cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc
Q psy1545 208 ------KGP--SLGPDW-HTQVN----LHGSS-RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273 (454)
Q Consensus 208 ------~~~--~l~~~~-~~~~~----~~~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~ 273 (454)
... ..+..+ -.+.. +.+.+ ...|++++++++++.++.+++ +..+.+.+++|+++.+|+||-|.|.
T Consensus 85 ~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~~~v~~~~g~~~~~~~vIgADG~ 163 (388)
T PRK07045 85 LIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDAD-GTVTSVTLSDGERVAPTVLVGADGA 163 (388)
T ss_pred EEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCC-CcEEEEEeCCCCEEECCEEEECCCC
Confidence 000 011000 00001 12222 346899999999999987653 2235688889999999999999999
Q ss_pred CcCcc
Q psy1545 274 VPNSN 278 (454)
Q Consensus 274 ~p~~~ 278 (454)
+....
T Consensus 164 ~S~vR 168 (388)
T PRK07045 164 RSMIR 168 (388)
T ss_pred ChHHH
Confidence 87544
|
|
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=8.6e-05 Score=74.58 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=34.8
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT 43 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~ 43 (454)
+|+|||||++||+||+.|++. |++|+|+|+++.+++..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~--G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR--GHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCcEEEEEeCCCCCCce
Confidence 689999999999999999998 89999999999887643
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=9.9e-05 Score=72.95 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=34.6
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
|++||+|||||.+|+++|++|++. |.+|+++|++....
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~--G~~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER--GADVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc--CCEEEEEecCccCC
Confidence 478999999999999999999998 77999999987654
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.52 E-value=9.7e-05 Score=74.30 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=34.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
.+|+|||||.+||+||+.|.+. |++|+|+|+.+..++-
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~--g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDA--SFKVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCCCce
Confidence 3799999999999999999997 8999999999888764
|
|
| >KOG2415|consensus | Back alignment and domain information |
|---|
Probab=97.52 E-value=8.7e-05 Score=70.42 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=34.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhc----CCCCeEEEECCCCcccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFL----HPGESIGLVTPSGIVKA 41 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~----~~g~~v~lie~~~~~~~ 41 (454)
+||+|||||||||+||++|+++ +.+.+|+++|+....++
T Consensus 77 ~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gg 119 (621)
T KOG2415|consen 77 VDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGG 119 (621)
T ss_pred ccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCC
Confidence 7999999999999999999876 34679999999987764
|
|
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0001 Score=75.38 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=34.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
++||+|||||+.|+++|+.|+++ |.+|+|+|+++...+
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~r--G~~V~LlEk~d~~~G 43 (502)
T PRK13369 6 TYDLFVIGGGINGAGIARDAAGR--GLKVLLCEKDDLAQG 43 (502)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC--CCcEEEEECCCCCCC
Confidence 58999999999999999999998 899999999976544
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00028 Score=69.80 Aligned_cols=141 Identities=22% Similarity=0.300 Sum_probs=79.4
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeC-CCccccc----cCCcchhhhHHHhh-ccCCCChhhhhhhcccccCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKD-KHISATF----LDPGAAEFFQDSIN-KTNTAKPETIFKRMRYNTGG 206 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~-~~~~~~~----~d~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~ 206 (454)
...|+|||||+.|+-+|..|. |.+|+++++. ..+.+.. +.+...+.+.+.-- +...+........+.+....
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 357999999999999999997 9999999997 3333321 22322222222111 10000000000001111000
Q ss_pred ---------CCC-CCCCCccccc---cccccCccCC-ceEEEeCceEEEEEcCCCCccceEEEec-CCcEEecCEEEEee
Q psy1545 207 ---------EKG-PSLGPDWHTQ---VNLHGSSRDT-KITIEYSCEVERIVDSEDDTCNAYVKLT-NGHTHACDIVVSAI 271 (454)
Q Consensus 207 ---------~~~-~~l~~~~~~~---~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~~v~~~-~g~~~~~D~vi~a~ 271 (454)
... ..++--+... -.+.+.+.+. +|+++.++.|+.++.+++ .+.++++ +|+++.||+||-|=
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~---~v~v~l~~dG~~~~a~llVgAD 158 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD---GVTVTLSFDGETLDADLLVGAD 158 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC---ceEEEEcCCCcEEecCEEEECC
Confidence 011 1111111111 0123334444 499999999999998764 4557777 99999999999999
Q ss_pred ccCcCcc
Q psy1545 272 GVVPNSN 278 (454)
Q Consensus 272 G~~p~~~ 278 (454)
|......
T Consensus 159 G~~S~vR 165 (387)
T COG0654 159 GANSAVR 165 (387)
T ss_pred CCchHHH
Confidence 9876543
|
|
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0001 Score=75.33 Aligned_cols=51 Identities=22% Similarity=0.171 Sum_probs=41.6
Q ss_pred cccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccC
Q psy1545 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVV 274 (454)
Q Consensus 222 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~ 274 (454)
+.+.+++.|++|+.++.|++|..++ ++...|++.+|+++++|.||+++|..
T Consensus 235 L~~~~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 235 LVKGLEKHGGQIRYRARVTKIILEN--GKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHCCCEEEeCCeeeEEEecC--CcEEEEEeCCCCEEEcCEEEECCChH
Confidence 3455577899999999999998654 34677888899889999999998764
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00011 Score=74.51 Aligned_cols=40 Identities=30% Similarity=0.329 Sum_probs=34.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcC----CCCeEEEECCCCccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLH----PGESIGLVTPSGIVKAV 42 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~----~g~~v~lie~~~~~~~~ 42 (454)
.+|+|||||++||+||+.|.+.+ .+.+|+|+|+++.+++.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr 45 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGK 45 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccce
Confidence 47999999999999999999863 24799999999887654
|
|
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00011 Score=75.14 Aligned_cols=40 Identities=25% Similarity=0.342 Sum_probs=36.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK 44 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~ 44 (454)
.||||||||++||+||..|++. |.+|+|+|+++.++++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~--G~~v~vlE~~~~~GG~~~ 41 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR--GYRVTLLEQHAQPGGCAG 41 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC--CCeEEEEecCCCCCCccc
Confidence 5899999999999999999998 999999999988876543
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00072 Score=67.51 Aligned_cols=135 Identities=13% Similarity=0.246 Sum_probs=73.8
Q ss_pred eEEEEcCchhHHHHHHHhc--C-CcEEEEEeCCCcccc----ccCCcchhhhHHHhhccCCCChhhhh-------hhc--
Q psy1545 137 KIVVIGNGGIATELVHELS--N-VDIVWVVKDKHISAT----FLDPGAAEFFQDSINKTNTAKPETIF-------KRM-- 200 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g-~~V~~i~~~~~~~~~----~~d~~~~~~~~~~l~~~~~~~~~~~~-------~~~-- 200 (454)
+|+|||||+.|+-+|..|. | .+|+++++.+.+... .+.+.....+...--. +...... ...
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~---~~~~~~~~~~~~~~~~~~~ 78 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLG---EAYTQVADSTPAPWQDIWF 78 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCCh---hHHHHHhcCCCccCcceeE
Confidence 7999999999999999996 6 599999998765421 1233322222221000 0000000 000
Q ss_pred ccccCC---CCCCCCCCccc----cccccccCc-cC-CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEee
Q psy1545 201 RYNTGG---EKGPSLGPDWH----TQVNLHGSS-RD-TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAI 271 (454)
Q Consensus 201 ~~~~~~---~~~~~l~~~~~----~~~~~~~~l-~~-~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~ 271 (454)
.+.... .+.....+... .+-.+.+.| +. .++.++.+++|++++..++ .+.+.+++|+++++|+||.|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~---~~~v~~~~g~~~~ad~vVgAD 155 (414)
T TIGR03219 79 EWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAE---EVQVLFTDGTEYRCDLLIGAD 155 (414)
T ss_pred EEEecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCC---cEEEEEcCCCEEEeeEEEECC
Confidence 000000 00000001000 000011111 11 2456788999999987653 477888999899999999999
Q ss_pred ccCcCc
Q psy1545 272 GVVPNS 277 (454)
Q Consensus 272 G~~p~~ 277 (454)
|.....
T Consensus 156 G~~S~v 161 (414)
T TIGR03219 156 GIKSAL 161 (414)
T ss_pred CccHHH
Confidence 987653
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >KOG2495|consensus | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0002 Score=68.46 Aligned_cols=95 Identities=22% Similarity=0.347 Sum_probs=68.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhc------------CCCCeEEEECCCCccccccccccccccccccc--hhhhHHHHHhc-
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFL------------HPGESIGLVTPSGIVKAVTKTVPVTKLLSDIT--VEETDANKFEG- 67 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~------------~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~- 67 (454)
.++|||||||.|..+|.+|+.. ....+|+++|..+.. +..|+ +.....+.+.+
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i------------L~mFdkrl~~yae~~f~~~ 286 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI------------LNMFDKRLVEYAENQFVRD 286 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH------------HHHHHHHHHHHHHHHhhhc
Confidence 3689999999999999999753 125689999998754 11121 22222344555
Q ss_pred CcEEEcc-eEEEEeCcccEEEeccC--cEEEecEEEEecCCCCCC
Q psy1545 68 LCTVIVD-TVAAIDPRVNCVITEKQ--NRIKYKTLCICTGASPRK 109 (454)
Q Consensus 68 ~i~~~~~-~v~~i~~~~~~v~~~~g--~~i~~d~lviAtG~~p~~ 109 (454)
+|++..+ .|..++.++..+.+.+| +.++|--||-|||..|+.
T Consensus 287 ~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp 331 (491)
T KOG2495|consen 287 GIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRP 331 (491)
T ss_pred cceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCch
Confidence 9999876 77888877666666555 479999999999987764
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00014 Score=72.75 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
||||||+|.||++||+++++. |.+|+|||+.+..++
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~--G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEA--GAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHT--TT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhh--cCeEEEEEeeccccc
Confidence 899999999999999999998 899999999987544
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00015 Score=71.16 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=32.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
+||+|||||++|+++|++|++. |.+|+|+|+....
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~--G~~V~vle~~~~~ 35 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR--GLSVTVIERSSRA 35 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCC
Confidence 5899999999999999999998 8999999998754
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00089 Score=68.49 Aligned_cols=169 Identities=21% Similarity=0.242 Sum_probs=82.4
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccccc-CCc----chhhhHHHhhccCCCChhhhhhhcccccCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFL-DPG----AAEFFQDSINKTNTAKPETIFKRMRYNTGGEK 208 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~-d~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (454)
|||+|||+|++|+-.|..+. |.+++++++.+.+-..+. +.. .+..+ +.+. .+.+.. .+.+. .-++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y-~sl~---~n~sk~---~~~fs-dfp~ 73 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVY-DSLH---TNTSKE---MMAFS-DFPF 73 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGS-TT-B----SS-GG---GSCCT-TS-H
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccc-cceE---EeeCch---HhcCC-CcCC
Confidence 79999999999999999886 999999999887765432 110 01111 0000 000000 00000 0111
Q ss_pred CCCCCCccccccc----cccCccCCc--eEEEeCceEEEEEcCCC--CccceEEEecC-C--cEEecCEEEEeeccC--c
Q psy1545 209 GPSLGPDWHTQVN----LHGSSRDTK--ITIEYSCEVERIVDSED--DTCNAYVKLTN-G--HTHACDIVVSAIGVV--P 275 (454)
Q Consensus 209 ~~~l~~~~~~~~~----~~~~l~~~g--v~i~~~~~v~~i~~~~~--~~~~~~v~~~~-g--~~~~~D~vi~a~G~~--p 275 (454)
.... |.+...-. +.+-.+..+ -.+++|++|.+++..++ ....+.|..++ | ++..+|.|++|+|.. |
T Consensus 74 p~~~-p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P 152 (531)
T PF00743_consen 74 PEDY-PDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKP 152 (531)
T ss_dssp CCCC-SSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCE
T ss_pred CCCC-CCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCC
Confidence 1111 11111111 111112223 36889999999986432 12356777654 3 345689999999985 3
Q ss_pred CcccccCCCCceecCCCceEecccccc----ccCceeecCcccc
Q psy1545 276 NSNIQVHGTPFELAPDCGIGVNELMQT----SISNVYAAGDVCT 315 (454)
Q Consensus 276 ~~~~~~~~~~l~~~~~g~i~vd~~~~t----~~~~Iya~GD~~~ 315 (454)
+.+ .-.-.|++. =+|.+.-...++. ..++|-++|-..+
T Consensus 153 ~~P-~~~~~G~e~-F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S 194 (531)
T PF00743_consen 153 NIP-EPSFPGLEK-FKGEIIHSKDYRDPEPFKGKRVLVVGGGNS 194 (531)
T ss_dssp SB------CTGGG-HCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred CCC-hhhhhhhhc-CCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence 332 101234431 2465555544542 2467888886544
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >KOG1298|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00047 Score=65.00 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS 36 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~ 36 (454)
.||+|||||.+|.+.|+.|++. |.+|.+|||.
T Consensus 46 ~DvIIVGAGV~GsaLa~~L~kd--GRrVhVIERD 77 (509)
T KOG1298|consen 46 ADVIIVGAGVAGSALAYALAKD--GRRVHVIERD 77 (509)
T ss_pred ccEEEECCcchHHHHHHHHhhC--CcEEEEEecc
Confidence 6999999999999999999998 9999999996
|
|
| >KOG1399|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0011 Score=65.80 Aligned_cols=173 Identities=18% Similarity=0.192 Sum_probs=90.1
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchh----hhHHHhhccCCCChhhhhhhcccccCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAE----FFQDSINKTNTAKPETIFKRMRYNTGGEK 208 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (454)
.++++|||+|++|+-.|..|. |.++++++|.+.+-.-+.-.+-.+ -+.+.++- +.+.....-..+-+.+..
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~t---n~pKe~~~~~dfpf~~~~ 82 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRT---NLPKEMMGYSDFPFPERD 82 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhc---cCChhhhcCCCCCCcccC
Confidence 689999999999999999987 999999999988765443221111 11122211 111111111111111110
Q ss_pred CCCCCCcccccc-ccccCccCCc--eEEEeCceEEEEEcCCCCccceEEEecCC----cEEecCEEEEeeccC--cCccc
Q psy1545 209 GPSLGPDWHTQV-NLHGSSRDTK--ITIEYSCEVERIVDSEDDTCNAYVKLTNG----HTHACDIVVSAIGVV--PNSNI 279 (454)
Q Consensus 209 ~~~l~~~~~~~~-~~~~~l~~~g--v~i~~~~~v~~i~~~~~~~~~~~v~~~~g----~~~~~D~vi~a~G~~--p~~~~ 279 (454)
+..-|.-...+ ++..-.+.-+ ..+.+++.+.++....+ +.+.|...+. .+.-+|.|++|+|.. |+.+
T Consensus 83 -~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~--gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P- 158 (448)
T KOG1399|consen 83 -PRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK--GKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIP- 158 (448)
T ss_pred -cccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC--CceeEEEecCCcceeEEEeeEEEEcccCcCCCCCC-
Confidence 11101110111 1122223334 36788888888877642 2577777554 467899999999998 4443
Q ss_pred ccCCCCceecCCCceEeccccc-c---ccCceeecCcccc
Q psy1545 280 QVHGTPFELAPDCGIGVNELMQ-T---SISNVYAAGDVCT 315 (454)
Q Consensus 280 ~~~~~~l~~~~~g~i~vd~~~~-t---~~~~Iya~GD~~~ 315 (454)
.+...+++. =.|.+.-...++ . ....|.++|--.+
T Consensus 159 ~~~g~~~~~-f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~S 197 (448)
T KOG1399|consen 159 QIPGPGIES-FKGKIIHSHDYKSPEKFRDKVVLVVGCGNS 197 (448)
T ss_pred cCCCCchhh-cCCcceehhhccCcccccCceEEEECCCcc
Confidence 222211221 133333222222 1 2367888885443
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00015 Score=74.79 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=34.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
++||+|||||..|+++|+.|+++ |.+|+|||+++...+
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~r--G~~V~LlEk~d~~~G 43 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALR--GLRCILVERHDIATG 43 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHc--CCeEEEEECCCCCCC
Confidence 58999999999999999999998 999999999876543
|
|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00014 Score=73.90 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=32.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++||||||+|++|++||..+++. |.+|+|||+.+
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~--G~~V~vlEk~~ 37 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREA--GASVLLLEAAP 37 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 58999999999999999999998 89999999986
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00073 Score=67.70 Aligned_cols=130 Identities=13% Similarity=0.222 Sum_probs=72.5
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc-ccccCCcchhhhHHHhhccCCCChhhhhh---hcccccCCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS-ATFLDPGAAEFFQDSINKTNTAKPETIFK---RMRYNTGGEKG 209 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~-~~~~d~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~ 209 (454)
-.++|||||+.|+.+|..++ |.+|.++++.+... +. .... ..+.+.+... ...+.. ...+.......
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~--~~g~---w~~~l~~lgl--~~~l~~~w~~~~v~~~~~~~ 101 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPN--NYGV---WVDEFEALGL--LDCLDTTWPGAVVYIDDGKK 101 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhcc--ccch---HHHHHHHCCc--HHHHHhhCCCcEEEEeCCCC
Confidence 37999999999999998886 99999999865321 11 0011 1111111000 000000 00011111001
Q ss_pred CCCCCccc--cc--c--ccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 210 PSLGPDWH--TQ--V--NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 210 ~~l~~~~~--~~--~--~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
..+...+. .+ + .+.+.+.+.|++++. ..|++++..++ ...|.+++|.++++|+||.|+|..+.
T Consensus 102 ~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~~~---~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 102 KDLDRPYGRVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHEES---KSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred ccccCcceeEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEcCC---eEEEEECCCCEEEcCEEEECcCCCcC
Confidence 11111111 01 0 123333557999974 58888887653 46788899989999999999999764
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00045 Score=68.29 Aligned_cols=138 Identities=17% Similarity=0.195 Sum_probs=75.2
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc--ccCCc---chhhhHHHhhccCCCCh---hhhhhhcccccC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT--FLDPG---AAEFFQDSINKTNTAKP---ETIFKRMRYNTG 205 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~--~~d~~---~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~ 205 (454)
-+|+|||||+.|+-+|..|. |.+|+++++.+..... ..++. +.....+.+.+....+. ........+.+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 47999999999999999986 9999999988764321 00110 11111122221100000 000000000000
Q ss_pred CCCCCCC--------CCcc----ccc-c--ccccCccCCc-eEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEE
Q psy1545 206 GEKGPSL--------GPDW----HTQ-V--NLHGSSRDTK-ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVS 269 (454)
Q Consensus 206 ~~~~~~l--------~~~~----~~~-~--~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~ 269 (454)
......+ .+.. ... + .+.+.+++.| ++++ ++.+++++..++ .+.+.+++|.++.+|.||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~---~~~v~~~~g~~~~a~~vI~ 161 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPD---AATLTLADGQVLRADLVVG 161 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCC---eEEEEECCCCEEEeeEEEE
Confidence 0000000 0100 000 0 1233345566 9999 889999876553 4668888888899999999
Q ss_pred eeccCcCc
Q psy1545 270 AIGVVPNS 277 (454)
Q Consensus 270 a~G~~p~~ 277 (454)
|.|.....
T Consensus 162 adG~~S~v 169 (388)
T PRK07608 162 ADGAHSWV 169 (388)
T ss_pred eCCCCchH
Confidence 99997654
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00078 Score=67.48 Aligned_cols=135 Identities=13% Similarity=0.187 Sum_probs=71.8
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc-----cCCcchhhhHHHhhccCCCChhhhh--hhcccccCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF-----LDPGAAEFFQDSINKTNTAKPETIF--KRMRYNTGG 206 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~-----~d~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~ 206 (454)
-.|+|||||+.|+-+|..|+ |.+|.++++.+..-.+. +.....+.+...+... ....... ....+....
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~ 83 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADS--APVERLITHEKLAFMTEK 83 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhc--CcccceeeeeeEEEEcCC
Confidence 47999999999999999886 99999999876543211 1111111111111110 0000000 000000000
Q ss_pred C-----C-----CCCCCCcc--c-cccc--cccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEee
Q psy1545 207 E-----K-----GPSLGPDW--H-TQVN--LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAI 271 (454)
Q Consensus 207 ~-----~-----~~~l~~~~--~-~~~~--~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~ 271 (454)
. . ...-...+ . ..+. +.+..++.|++++.++.|+++..+++ .+.....+|.++.+|.||.|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g---~v~~v~~~g~~i~A~~VI~A~ 160 (428)
T PRK10157 84 SAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDG---KVVGVEADGDVIEAKTVILAD 160 (428)
T ss_pred CceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCC---EEEEEEcCCcEEECCEEEEEe
Confidence 0 0 00000001 0 0000 23334568999999999999876542 232334567789999999999
Q ss_pred ccCc
Q psy1545 272 GVVP 275 (454)
Q Consensus 272 G~~p 275 (454)
|...
T Consensus 161 G~~s 164 (428)
T PRK10157 161 GVNS 164 (428)
T ss_pred CCCH
Confidence 9854
|
|
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00018 Score=73.56 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=33.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
++||||||+|.||++||.++++. |.+|+|+|+.+..+
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~--G~~VillEK~~~~g 56 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAA--GARVLVLERAAGAG 56 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCCCCC
Confidence 47999999999999999999998 89999999987643
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00092 Score=66.47 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=41.9
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
+.+++.|++++.++++++++.+++ .+.+.+++|+++.+|+||.|.|..+..
T Consensus 119 ~~~~~~gv~v~~~~~v~~i~~~~~---~v~v~~~~g~~~~ad~vI~AdG~~S~v 169 (403)
T PRK07333 119 KRAEALGIDLREATSVTDFETRDE---GVTVTLSDGSVLEARLLVAADGARSKL 169 (403)
T ss_pred HHHHhCCCEEEcCCEEEEEEEcCC---EEEEEECCCCEEEeCEEEEcCCCChHH
Confidence 444567999999999999986653 467888888899999999999998754
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00014 Score=74.69 Aligned_cols=51 Identities=24% Similarity=0.208 Sum_probs=40.7
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
.+.+++.|+++++++.|++|..++ +..+.|++++|+++.+|.||++++...
T Consensus 226 ~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~V~~~~g~~~~ad~VI~a~~~~~ 276 (502)
T TIGR02734 226 AKLAEDLGGELRLNAEVIRIETEG--GRATAVHLADGERLDADAVVSNADLHH 276 (502)
T ss_pred HHHHHHCCCEEEECCeEEEEEeeC--CEEEEEEECCCCEEECCEEEECCcHHH
Confidence 344467899999999999998655 235678888998899999999988643
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >KOG1276|consensus | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0002 Score=68.47 Aligned_cols=42 Identities=33% Similarity=0.419 Sum_probs=37.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT 43 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~ 43 (454)
.++|+|+|||.+||++|++|+++.++..|+|+|+.+..++..
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwi 52 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWI 52 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccccee
Confidence 478999999999999999999998888999999999877643
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00053 Score=69.32 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=30.8
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
.+++++|||+|+.|+.+|..|+ |.+|+++++.+.+
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~ 175 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP 175 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 3789999999999999999986 9999999986643
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00045 Score=68.18 Aligned_cols=48 Identities=21% Similarity=0.305 Sum_probs=39.4
Q ss_pred ccC-CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 226 SRD-TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 226 l~~-~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
+.+ .|++++.++++++++.+++ .+.+.+++|+++.+|+||.|.|....
T Consensus 115 ~~~~~gv~~~~~~~v~~i~~~~~---~~~v~~~~g~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 115 LALLTNIQLYCPARYKEIIRNQD---YVRVTLDNGQQLRAKLLIAADGANSK 163 (382)
T ss_pred HHhCCCcEEEcCCeEEEEEEcCC---eEEEEECCCCEEEeeEEEEecCCChH
Confidence 344 4999999999999986553 46778888888999999999998754
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00043 Score=68.33 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=40.5
Q ss_pred CccCCc-eEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 225 SSRDTK-ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 225 ~l~~~g-v~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
.+++.| ++++.++.|++++..++ .+.+.+++|+++.+|+||.|.|.....
T Consensus 115 ~~~~~~~~~v~~~~~v~~i~~~~~---~~~v~~~~g~~~~~~~vi~adG~~S~v 165 (385)
T TIGR01988 115 RLQEYPNVTLLCPARVVELPRHSD---HVELTLDDGQQLRARLLVGADGANSKV 165 (385)
T ss_pred HHHhCCCcEEecCCeEEEEEecCC---eeEEEECCCCEEEeeEEEEeCCCCCHH
Confidence 344556 99999999999987653 467888899889999999999987654
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00029 Score=71.26 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=31.0
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
.+++++|||+|+.|+.+|..++ |.+|+++++.+.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 3689999999999999999886 9999999987754
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.001 Score=68.92 Aligned_cols=111 Identities=16% Similarity=0.180 Sum_probs=65.4
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLG 213 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 213 (454)
-.++|||||+.|+.+|..+. |.+|+++++.. +-....... .+.. .......-+
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~-------~i~~-----------------~pg~~~~~~ 59 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITS-------EVVN-----------------YPGILNTTG 59 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEecc-------cccc-----------------CCCCcCCCH
Confidence 47999999999999999886 99999999753 211100000 0000 000000000
Q ss_pred CccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 214 PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 214 ~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
.++... +.+.+++.|++++ ++.+..+...++ ...+...++ ++.+|.+|+|||.+|...
T Consensus 60 ~~l~~~--l~~~~~~~gv~~~-~~~V~~i~~~~~---~~~V~~~~g-~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 60 PELMQE--MRQQAQDFGVKFL-QAEVLDVDFDGD---IKTIKTARG-DYKTLAVLIATGASPRKL 117 (555)
T ss_pred HHHHHH--HHHHHHHcCCEEe-ccEEEEEEecCC---EEEEEecCC-EEEEeEEEECCCCccCCC
Confidence 111111 1222344688885 567888876542 345666665 588999999999998764
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00019 Score=73.43 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=34.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
+||+|||||++||+||+.|.+.. |.+|+|+|+++.+++.
T Consensus 13 ~~v~IIGaGisGL~aA~~L~~~~-g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 13 KDVAVVGAGVSGLAAAYALASKH-GVNVLVTEARDRVGGN 51 (496)
T ss_pred CCEEEECcCHHHHHHHHHHHHhc-CCCEEEEecCCCCCCc
Confidence 68999999999999999999863 6899999999887754
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00019 Score=73.45 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=33.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
++||||||+|.||++||..+++. |.+|+|||+.+..+
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~--Ga~VivlEK~~~~G 97 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDA--GMNPVILEKMPVAG 97 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCCCCC
Confidence 47999999999999999999998 89999999987643
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00018 Score=73.08 Aligned_cols=38 Identities=29% Similarity=0.289 Sum_probs=34.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||+|||||+.|+++|++|+++.++.+|+|+|+++..
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV 42 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence 47999999999999999999998788999999998643
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0015 Score=64.59 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=40.6
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
.|++++.++++++++.+++ .+.+.+++|.++.+|+||.|.|..+...
T Consensus 124 ~~i~i~~~~~v~~~~~~~~---~~~v~~~~g~~~~~~lvIgADG~~S~vR 170 (384)
T PRK08849 124 PNLTLMCPEKLADLEFSAE---GNRVTLESGAEIEAKWVIGADGANSQVR 170 (384)
T ss_pred CCeEEECCCceeEEEEcCC---eEEEEECCCCEEEeeEEEEecCCCchhH
Confidence 5799999999999987653 4678889999999999999999988654
|
|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0002 Score=74.56 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=33.0
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
-+.||||||+|.||++||.++++. |.+|+|||+.+..
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~--G~~V~lieK~~~~ 38 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEA--GVHVDLFSLVPVK 38 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHc--CCcEEEEEccCCC
Confidence 057999999999999999999998 8999999987654
|
|
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00013 Score=71.05 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=51.2
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEec---CC--cEEecCEEEEeeccCcCcccccCCCCcee-cCCCceEec-cccc
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLT---NG--HTHACDIVVSAIGVVPNSNIQVHGTPFEL-APDCGIGVN-ELMQ 301 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~-~~~g~i~vd-~~~~ 301 (454)
.|++++++++|+.++..+++ .+.|... +| .++.++.|++..|-..-. +++..|++- ..-|+..|. .+++
T Consensus 195 ~~~~~~~~~eV~~i~r~~dg--~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~--LLqksgi~e~~gyggfPVsG~fl~ 270 (488)
T PF06039_consen 195 KGFELHLNHEVTDIKRNGDG--RWEVKVKDLKTGEKREVRAKFVFVGAGGGALP--LLQKSGIPEGKGYGGFPVSGQFLR 270 (488)
T ss_pred CCcEEEecCEeCeeEECCCC--CEEEEEEecCCCCeEEEECCEEEECCchHhHH--HHHHcCChhhcccCCCcccceEEe
Confidence 59999999999999987752 3555543 22 679999999999887543 777777642 223445555 6677
Q ss_pred cccC
Q psy1545 302 TSIS 305 (454)
Q Consensus 302 t~~~ 305 (454)
++.|
T Consensus 271 ~~n~ 274 (488)
T PF06039_consen 271 CKNP 274 (488)
T ss_pred cCCH
Confidence 6554
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.001 Score=68.03 Aligned_cols=134 Identities=19% Similarity=0.219 Sum_probs=74.4
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc----ccCCcchhhhHH-----HhhccCCCChhhhhhhccccc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT----FLDPGAAEFFQD-----SINKTNTAKPETIFKRMRYNT 204 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~----~~d~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~ 204 (454)
..|+|||||+.|+-+|..|. |.+|+++++.+..... .+.+...+.+.+ .+.+.. .... ...+..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~----~~~~-~~~~~~ 77 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKG----RKLP-SGHFAG 77 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhc----cccc-ceEEec
Confidence 36999999999999999996 9999999987654321 112222222211 111100 0000 000000
Q ss_pred C---CCCCC-CCCCcc---ccccc----cccCccCCceEEEeCceEEEEEcCCCCccceEEEec--CC-cEEecCEEEEe
Q psy1545 205 G---GEKGP-SLGPDW---HTQVN----LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT--NG-HTHACDIVVSA 270 (454)
Q Consensus 205 ~---~~~~~-~l~~~~---~~~~~----~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~--~g-~~~~~D~vi~a 270 (454)
. ..+.. .....+ -.+-. +.+.+++.|++++.++++++++.+++ .+.+.+. +| +++.+|+||.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~---~v~v~~~~~~g~~~i~a~~vVgA 154 (493)
T PRK08244 78 LDTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGD---GVEVVVRGPDGLRTLTSSYVVGA 154 (493)
T ss_pred ccccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCC---eEEEEEEeCCccEEEEeCEEEEC
Confidence 0 00000 000000 00101 23334567999999999999986653 3445543 45 57999999999
Q ss_pred eccCcCc
Q psy1545 271 IGVVPNS 277 (454)
Q Consensus 271 ~G~~p~~ 277 (454)
.|.++..
T Consensus 155 DG~~S~v 161 (493)
T PRK08244 155 DGAGSIV 161 (493)
T ss_pred CCCChHH
Confidence 9998754
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0009 Score=68.09 Aligned_cols=134 Identities=15% Similarity=0.113 Sum_probs=75.7
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc----cCCcchhhhHH-----HhhccCCCChhhhhhh-----
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF----LDPGAAEFFQD-----SINKTNTAKPETIFKR----- 199 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~----~d~~~~~~~~~-----~l~~~~~~~~~~~~~~----- 199 (454)
..|+|||+|++|+-+|..|. |.+|.++++.+...... +.+...+.+.. .+... .......
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~----~~~~~~~~~~~~ 81 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPL----GKPCNTSSVWAN 81 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhh----CccceeEEEecC
Confidence 47999999999999999886 99999999887543210 12221111111 11000 0000000
Q ss_pred ccccc-----CCCCCCCCCCc--ccccc----ccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEE
Q psy1545 200 MRYNT-----GGEKGPSLGPD--WHTQV----NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVV 268 (454)
Q Consensus 200 ~~~~~-----~~~~~~~l~~~--~~~~~----~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi 268 (454)
-.+.. .........+. ...+. .+.+.+++.|++++.++++++++.+++ .+.+.+.+|+++.+++||
T Consensus 82 g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~---~v~v~~~~g~~v~a~~vV 158 (487)
T PRK07190 82 GKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQA---GCLTTLSNGERIQSRYVI 158 (487)
T ss_pred CceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC---eeEEEECCCcEEEeCEEE
Confidence 00000 00000000000 00110 123344667999999999999987653 355667788889999999
Q ss_pred EeeccCcC
Q psy1545 269 SAIGVVPN 276 (454)
Q Consensus 269 ~a~G~~p~ 276 (454)
.|.|.+..
T Consensus 159 gADG~~S~ 166 (487)
T PRK07190 159 GADGSRSF 166 (487)
T ss_pred ECCCCCHH
Confidence 99998763
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0015 Score=65.96 Aligned_cols=91 Identities=14% Similarity=0.120 Sum_probs=59.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+|+|||||..|+-+|..|+++ |.+|+++++..... .+ ......+.+.+ +|+++.. .++.+.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~--G~~Vtlv~~~~~~~-------~~-------~~~~~~~~l~~~GV~~~~~~~~~~i~ 336 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRL--GAEVHCLYRRTRED-------MT-------ARVEEIAHAEEEGVKFHFLCQPVEII 336 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCEEEEEeecCccc-------CC-------CCHHHHHHHHhCCCEEEeccCcEEEE
Confidence 4799999999999999999998 88999998875310 00 01112234444 8888633 555553
Q ss_pred Cc--cc--EEEec---------cC-----------cEEEecEEEEecCCCCCC
Q psy1545 81 PR--VN--CVITE---------KQ-----------NRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~--~~--~v~~~---------~g-----------~~i~~d~lviAtG~~p~~ 109 (454)
.+ .+ .|.+. +| ..+.+|.||+|+|..|..
T Consensus 337 ~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~ 389 (449)
T TIGR01316 337 GDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNP 389 (449)
T ss_pred EcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCc
Confidence 21 11 12221 12 269999999999998764
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00023 Score=67.54 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=31.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
||+||||+|++|..+|.+|++. ++.+|+|+|+.+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~-~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEA-GNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTS-TTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhC-CCCcEEEEEccccCc
Confidence 7999999999999999999997 347999999998654
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00025 Score=73.05 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=31.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+||+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~--G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQ--GRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhc--CCEEEEEcccc
Confidence 47999999999999999999998 99999999976
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00026 Score=71.30 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=32.2
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCC-CeEEEECCCCccc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPG-ESIGLVTPSGIVK 40 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g-~~v~lie~~~~~~ 40 (454)
||||||||.||++||..+++. | .+|+|+|+.+..+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~--G~~~V~vlEk~~~~g 36 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKA--GAANVVLLEKMPVIG 36 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHc--CCccEEEEecCCCCC
Confidence 799999999999999999998 8 8999999987653
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0026 Score=60.84 Aligned_cols=202 Identities=13% Similarity=0.123 Sum_probs=99.6
Q ss_pred CCeEEEEcCchhHHHHHHHhc---CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCC-
Q psy1545 135 AKKIVVIGNGGIATELVHELS---NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP- 210 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~---g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 210 (454)
.-.++|||+|..|+-+|..++ +.+|++++++..+-....... ..+...+.+ ........+..+.+... ..
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg--~l~~~~vv~---~~a~e~LeElGV~fd~~-dgy 165 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGG--QLFSAMVVR---KPAHLFLDELGVPYDEQ-ENY 165 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCc--ccccccccc---cHHHHHHHHcCCCcccC-CCe
Confidence 458999999999999999986 689999998765432111110 000000000 00001111222222111 00
Q ss_pred CCC---CccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEe------cC---C-----cEEecCEEEEeecc
Q psy1545 211 SLG---PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL------TN---G-----HTHACDIVVSAIGV 273 (454)
Q Consensus 211 ~l~---~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~------~~---g-----~~~~~D~vi~a~G~ 273 (454)
... .++...+ +.+.+++.||+++.++.+.++..+++ ....+.. .+ + ..+.++.||+|||.
T Consensus 166 ~vv~ha~e~~stL-i~ka~~~~gVkI~~~t~V~DLI~~~g--rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 166 VVIKHAALFTSTI-MSKLLARPNVKLFNAVAAEDLIVKGD--RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred eEecchHHHHHHH-HHHHHhcCCCEEEeCeEeeeEEecCC--EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence 000 0000111 12233557999999999999876542 3333432 11 1 26899999999996
Q ss_pred CcCcc----cccCCCCce--ecCCCceEecc--c-----cccccCceeecCcccccCCccccchhhccChHHH-HHHHHH
Q psy1545 274 VPNSN----IQVHGTPFE--LAPDCGIGVNE--L-----MQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQA-KHMGTY 339 (454)
Q Consensus 274 ~p~~~----~~~~~~~l~--~~~~g~i~vd~--~-----~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A-~~~g~~ 339 (454)
.+... ..+...++. +..-....++. . -+--+|++|++|=.+..- ...+ .+.-..-+ ...|+.
T Consensus 243 ~g~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~-~g~~---rmgp~fg~m~~sg~k 318 (357)
T PLN02661 243 DGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEI-DGSP---RMGPTFGAMMISGQK 318 (357)
T ss_pred CCcchhhhhhcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhh-cCCC---ccCchhHhHHhhhHH
Confidence 65321 011111110 00011122221 1 111379999999766431 1111 11112223 466888
Q ss_pred HHhhhcCCCC
Q psy1545 340 AAKCMVGAVK 349 (454)
Q Consensus 340 aa~~i~~~~~ 349 (454)
||+-++.++.
T Consensus 319 ~a~~~~~~l~ 328 (357)
T PLN02661 319 AAHLALKALG 328 (357)
T ss_pred HHHHHHHHHc
Confidence 9988887664
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0002 Score=71.36 Aligned_cols=145 Identities=16% Similarity=0.206 Sum_probs=79.0
Q ss_pred ccEEEECCCH-HHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccccc--ccchhhhHHHHHhc--CcEEEcceEE
Q psy1545 3 FTYLIIGGGI-AGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLS--DITVEETDANKFEG--LCTVIVDTVA 77 (454)
Q Consensus 3 ~dvvIIGgG~-aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~i~~~~~~v~ 77 (454)
++.+++|.++ ++...|.+|... +. .. .. .|......+.... .........+.+.+ ...-+.++|.
T Consensus 6 ~~e~~~~~~~~~a~~~a~rCl~C--~~-~C-~~------~cp~~~~IP~~~~lv~~g~~~~a~~~i~~tn~~p~~~gRvc 75 (457)
T COG0493 6 FREAVVGSGPEAAIYEAARCLDC--GD-PC-IT------GCPVHNDIPEPIGLVREGVDHEAIKLIHKTNNLPAITGRVC 75 (457)
T ss_pred ceeeecCCCHHHHHHHHHHHHcC--CC-cc-cc------CCcCCCcCCCHHHHHhcCCcHHHHHHHHHhCCCccccCccC
Confidence 6789999999 888888888876 21 11 11 1222211111110 01111112222222 3333455555
Q ss_pred EEe--CcccEEEeccCcEEEecEEEEecCCCCCCC-CCCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHh
Q psy1545 78 AID--PRVNCVITEKQNRIKYKTLCICTGASPRKI-WYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHEL 154 (454)
Q Consensus 78 ~i~--~~~~~v~~~~g~~i~~d~lviAtG~~p~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l 154 (454)
... -....+...++..+.++.|..+.|...... .+++..... ..+++|.|||+|+-|+.+|..|
T Consensus 76 p~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~-------------~tg~~VaviGaGPAGl~~a~~L 142 (457)
T COG0493 76 PLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGELPGS-------------RTGKKVAVIGAGPAGLAAADDL 142 (457)
T ss_pred CCCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCCCCCC-------------CCCCEEEEECCCchHhhhHHHH
Confidence 443 223333332345677888887777543211 111000000 1278999999999999999999
Q ss_pred c--CCcEEEEEeCCCccc
Q psy1545 155 S--NVDIVWVVKDKHISA 170 (454)
Q Consensus 155 ~--g~~V~~i~~~~~~~~ 170 (454)
+ |+.||++++.+..-.
T Consensus 143 ~~~G~~Vtv~e~~~~~GG 160 (457)
T COG0493 143 SRAGHDVTVFERVALDGG 160 (457)
T ss_pred HhCCCeEEEeCCcCCCce
Confidence 7 999999988765443
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00024 Score=74.42 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||||||+|.||++||..+++. |.+|+|||+.+..
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~--G~~V~lieK~~~~ 43 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARER--GLRVAVVCKSLFG 43 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHC--CCCEEEEeccCCC
Confidence 57999999999999999999998 8999999998654
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0003 Score=72.22 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=35.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcC---CCCeEEEECCCCcccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLH---PGESIGLVTPSGIVKAVT 43 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~---~g~~v~lie~~~~~~~~~ 43 (454)
..||+|||||++|++||..|++.+ .+.+|+|+|+++.+++..
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~ 49 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRI 49 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeE
Confidence 468999999999999999999872 138999999998887654
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00027 Score=71.44 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=33.8
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
+|+|||||++|++||+.|.+. |.+|+|+|+++.+++.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~--G~~v~vlE~~~~~GG~ 37 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADA--GHTPIVLEARDVLGGK 37 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCC
Confidence 589999999999999999998 8999999999887653
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00089 Score=66.41 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=37.8
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
.+.+++.|+++++++.+.++...++ .+.+++ ++.++.+|.||+|+|...
T Consensus 112 ~~~l~~~gv~i~~~~~V~~i~~~~~---~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 112 LNELKELGVEILTNSKVKSIKKDDN---GFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHCCCEEEeCCEEEEEEecCC---eEEEEE-CCcEEEcCEEEECCCCcc
Confidence 3445678999999999999976542 455665 456799999999999754
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0003 Score=70.19 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=41.4
Q ss_pred ccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 226 SRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 226 l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
+...|.++++++.|.+|..+++ +....|++++|+++.++.||....+.|..
T Consensus 242 ~a~~Gg~~~L~~~V~~I~~~~~-g~~~~V~~~~Ge~i~a~~VV~~~s~~p~~ 292 (443)
T PTZ00363 242 CAIYGGTYMLNTPVDEVVFDEN-GKVCGVKSEGGEVAKCKLVICDPSYFPDK 292 (443)
T ss_pred HHHcCcEEEcCCeEEEEEEcCC-CeEEEEEECCCcEEECCEEEECccccccc
Confidence 3567999999999999976542 34577889999999999999988887753
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00064 Score=66.00 Aligned_cols=140 Identities=16% Similarity=0.237 Sum_probs=71.4
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhh-------cccccC--
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKR-------MRYNTG-- 205 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~-- 205 (454)
+|+|||||+.|+-+|..|+ |.+|+++++.+.+........+.....+.|.... -........ ..+...
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lg-l~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLG-LLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTT-EHHHHHHHSEEECEEEEEEEEETT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccccccccccccccccccccccccc-chhhhhhhcccccceeeEeecccC
Confidence 6899999999999999997 9999999998776542111111111122221100 000000000 000000
Q ss_pred ------------CCCC-CCCCCcc--ccccc----cccCccCCceEEEeCceEEEEEcCCCCccceEEEec-CC--cEEe
Q psy1545 206 ------------GEKG-PSLGPDW--HTQVN----LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT-NG--HTHA 263 (454)
Q Consensus 206 ------------~~~~-~~l~~~~--~~~~~----~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~-~g--~~~~ 263 (454)
..+. ..-.+.. ..+.. +.+.+++.|++++.++++..++.+.+ +....+... +| ++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~-~~~~~~~~~~~g~~~~i~ 160 (356)
T PF01494_consen 82 DSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDD-GVTVVVRDGEDGEEETIE 160 (356)
T ss_dssp TSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETT-EEEEEEEETCTCEEEEEE
T ss_pred CccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeeccccccccc-ccccccccccCCceeEEE
Confidence 0000 0000110 01111 23444667899999999999887654 212223332 34 3789
Q ss_pred cCEEEEeeccCcCcc
Q psy1545 264 CDIVVSAIGVVPNSN 278 (454)
Q Consensus 264 ~D~vi~a~G~~p~~~ 278 (454)
+|+||-|-|.+....
T Consensus 161 adlvVgADG~~S~vR 175 (356)
T PF01494_consen 161 ADLVVGADGAHSKVR 175 (356)
T ss_dssp ESEEEE-SGTT-HHH
T ss_pred EeeeecccCcccchh
Confidence 999999999987654
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00036 Score=72.21 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=32.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++||||||+|.||++||..+++. |.+|+|||+.+
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~--G~~VivlEK~~ 37 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADA--GKRVLLLDQEN 37 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 58999999999999999999998 89999999988
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00035 Score=73.13 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=34.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
+||||||||..|.++|+.|+++ |.+|+|||+++...+.
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~r--Gl~V~LvE~~d~a~Gt 109 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATR--GLRVGLVEREDFSSGT 109 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhC--CCEEEEEeccccCCCc
Confidence 7999999999999999999998 9999999999766543
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00034 Score=71.69 Aligned_cols=36 Identities=31% Similarity=0.365 Sum_probs=32.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
++||||||+| +|++||.++++. |.+|+|||+.+..+
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~--G~~V~vlEk~~~~G 42 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAARE--GLSVALVEATDKFG 42 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHC--CCcEEEEecCCCCC
Confidence 4799999999 999999999998 89999999987644
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00054 Score=69.67 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=30.7
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
+++++|||+|+.|+++|..|+ |.+|+++++.+++
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 579999999999999999987 9999999987764
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00075 Score=68.03 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=31.0
Q ss_pred CCeEEEEcCchhHHHHHHHhc----CCcEEEEEeCCCcc
Q psy1545 135 AKKIVVIGNGGIATELVHELS----NVDIVWVVKDKHIS 169 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~~~~ 169 (454)
+++|+|||+|+.|+.+|..|+ |.+|+++++.+.+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 789999999999999999884 89999999987543
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0015 Score=64.92 Aligned_cols=140 Identities=14% Similarity=0.224 Sum_probs=77.1
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc----------ccCCcchhhhHHH-hhccCCCChhhhhhhccc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT----------FLDPGAAEFFQDS-INKTNTAKPETIFKRMRY 202 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~----------~~d~~~~~~~~~~-l~~~~~~~~~~~~~~~~~ 202 (454)
.+|+|||||+.|+-+|..|+ |.+|+++++.+..... .+.+...+.+.+. +.+...+..........+
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~ 83 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV 83 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence 47999999999999999997 9999999988753210 0122212222111 000000000000000110
Q ss_pred ccCCC-----CC-CCCC-Ccc---ccccc----cccCccC-CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEE
Q psy1545 203 NTGGE-----KG-PSLG-PDW---HTQVN----LHGSSRD-TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIV 267 (454)
Q Consensus 203 ~~~~~-----~~-~~l~-~~~---~~~~~----~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~v 267 (454)
..... +. ...+ +.. -.+-. +.+.+.+ .||+++.++++++++.+++ .+.+.+.+|+++.+|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~---~v~v~~~~g~~i~a~lv 160 (400)
T PRK08013 84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGEN---EAFLTLKDGSMLTARLV 160 (400)
T ss_pred EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC---eEEEEEcCCCEEEeeEE
Confidence 00000 00 0001 000 00100 2222333 4899999999999977653 46788889999999999
Q ss_pred EEeeccCcCcc
Q psy1545 268 VSAIGVVPNSN 278 (454)
Q Consensus 268 i~a~G~~p~~~ 278 (454)
|-|-|......
T Consensus 161 VgADG~~S~vR 171 (400)
T PRK08013 161 VGADGANSWLR 171 (400)
T ss_pred EEeCCCCcHHH
Confidence 99999987553
|
|
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00039 Score=70.23 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=33.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
+||||||||.+|+++|..|++..|+.+|+|+|+.+.+
T Consensus 7 ~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~ 43 (497)
T PRK13339 7 KDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSP 43 (497)
T ss_pred CCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCc
Confidence 6999999999999999999999889999999994443
|
|
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00038 Score=72.54 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=31.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+||||||||.||++||..+++. |.+|+|||+...
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~--G~~V~vleK~~~ 46 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARA--GLSVAVLSKVFP 46 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHC--CCcEEEEeccCC
Confidence 47999999999999999999997 889999999753
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00068 Score=67.50 Aligned_cols=46 Identities=24% Similarity=0.347 Sum_probs=39.1
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
.||+++.++++++++.+++ .+.+.+++|+++.+|+||.|.|.....
T Consensus 125 ~~v~v~~~~~v~~i~~~~~---~~~v~~~~g~~~~a~lvIgADG~~S~v 170 (405)
T PRK08850 125 DNVTLLMPARCQSIAVGES---EAWLTLDNGQALTAKLVVGADGANSWL 170 (405)
T ss_pred CCeEEEcCCeeEEEEeeCC---eEEEEECCCCEEEeCEEEEeCCCCChh
Confidence 5799999999999976553 467888899999999999999987654
|
|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00037 Score=72.87 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=32.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||+|||||.||++||.++++. |.+|+|+||....
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~--G~~V~lveK~~~~ 64 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVEL--GYKTACISKLFPT 64 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHc--CCcEEEEeccCCC
Confidence 47999999999999999999997 8999999998654
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0016 Score=66.47 Aligned_cols=129 Identities=19% Similarity=0.262 Sum_probs=69.6
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhh---hcccccCCCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFK---RMRYNTGGEKGP 210 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~ 210 (454)
-.|+|||+|+.|+.+|..++ |.+|.++++...+...+ .++....+.+. . ...+.. ...+.+......
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~---GvW~~~l~~lg---l--~~~i~~~w~~~~v~~~~~~~~ 180 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY---GVWEDEFKDLG---L--EDCIEHVWRDTIVYLDDDKPI 180 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCcc---ccchhHHHhcC---c--HHHHHhhcCCcEEEecCCcee
Confidence 47999999999999998886 99999998754432211 11111011100 0 000000 000111000000
Q ss_pred CCCCcc---ccc---cccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 211 SLGPDW---HTQ---VNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 211 ~l~~~~---~~~---~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
.+...+ ... ..+.+.+.+.|+++ .++.|+++...++ ....+.+.+|.++.++.||.|+|..+
T Consensus 181 ~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~--~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 181 MIGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASD--GLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred eccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCC--cEEEEEEcCCcEEECCEEEECCCcCh
Confidence 011111 110 01223335579998 5678999876543 12334567788899999999999976
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0004 Score=72.29 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
+.+|+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 81 ~~~VlIVGgGIaGLalAlaL~r~--Gi~V~V~Er~~ 114 (668)
T PLN02927 81 KSRVLVAGGGIGGLVFALAAKKK--GFDVLVFEKDL 114 (668)
T ss_pred CCCEEEECCCHHHHHHHHHHHhc--CCeEEEEeccc
Confidence 36899999999999999999998 99999999975
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00041 Score=74.53 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=33.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++|+|||||+||+++|..|++.++|++|+|+|+.+.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 379999999999999999999877899999999875
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.003 Score=62.77 Aligned_cols=139 Identities=14% Similarity=0.147 Sum_probs=74.3
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc----cCCcchhhhHHHh-hccCCCChhhhhhhcccccCCC-
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF----LDPGAAEFFQDSI-NKTNTAKPETIFKRMRYNTGGE- 207 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~----~d~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~- 207 (454)
++|+|||||+.|+-+|..|. |.+|+++++.+.+.... +.+...+.+.+.- .+.... .........+.....
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~-~~~~~~~~~~~~g~~~ 81 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSG-TGVTPKALYLMDGRKA 81 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhh-cccCcceEEEecCCCc
Confidence 78999999999999999996 99999999887543211 1222222222110 000000 000000000000000
Q ss_pred -------C----CCCCCCccc--cccc----cccCcc-CCceEEEeCceEEEEEcCCCCccceEEEe---cCCcEEecCE
Q psy1545 208 -------K----GPSLGPDWH--TQVN----LHGSSR-DTKITIEYSCEVERIVDSEDDTCNAYVKL---TNGHTHACDI 266 (454)
Q Consensus 208 -------~----~~~l~~~~~--~~~~----~~~~l~-~~gv~i~~~~~v~~i~~~~~~~~~~~v~~---~~g~~~~~D~ 266 (454)
. ....+..+. .+-. +.+.+. ..++++++++++++++.+++ .+.+.+ ++++++++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~---~v~v~~~~~~~~~~~~adl 158 (400)
T PRK06475 82 RPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGN---SITATIIRTNSVETVSAAY 158 (400)
T ss_pred ceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCC---ceEEEEEeCCCCcEEecCE
Confidence 0 000010110 1101 222222 24899999999999987553 355555 3346799999
Q ss_pred EEEeeccCcCcc
Q psy1545 267 VVSAIGVVPNSN 278 (454)
Q Consensus 267 vi~a~G~~p~~~ 278 (454)
||-|-|.+....
T Consensus 159 vIgADG~~S~vR 170 (400)
T PRK06475 159 LIACDGVWSMLR 170 (400)
T ss_pred EEECCCccHhHH
Confidence 999999987554
|
|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00044 Score=72.43 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=32.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||+|||+|.||++||.++++. |.+|+|+||....
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~--G~~VilveK~~~~ 85 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEH--GFNTACITKLFPT 85 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhc--CCcEEEEEcCCCC
Confidence 36999999999999999999997 8999999998653
|
|
| >KOG2404|consensus | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0014 Score=60.52 Aligned_cols=36 Identities=28% Similarity=0.528 Sum_probs=31.9
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
.+||||+|.||++|+..+... +..|+|+|++...++
T Consensus 11 pvvVIGgGLAGLsasn~iin~--gg~V~llek~~s~GG 46 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINK--GGIVILLEKAGSIGG 46 (477)
T ss_pred cEEEECCchhhhhhHHHHHhc--CCeEEEEeccCCcCC
Confidence 499999999999999999987 667999999987664
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.001 Score=71.66 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=29.7
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
+++++|||+|+.|+.+|..|+ |.+|+++++.+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~ 465 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE 465 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 679999999999999999986 999999998654
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0038 Score=61.81 Aligned_cols=48 Identities=15% Similarity=0.300 Sum_probs=39.6
Q ss_pred cCC-ceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 227 RDT-KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 227 ~~~-gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
++. |++++.++.++++...++ .+.+.+++|+++.+|+||.|.|.....
T Consensus 123 ~~~~gv~i~~~~~v~~i~~~~~---~~~v~~~~g~~~~a~~vI~AdG~~S~v 171 (391)
T PRK08020 123 EAHPNVTLRCPASLQALQRDDD---GWELTLADGEEIQAKLVIGADGANSQV 171 (391)
T ss_pred HcCCCcEEEcCCeeEEEEEcCC---eEEEEECCCCEEEeCEEEEeCCCCchh
Confidence 344 999999999999976553 467788888889999999999998754
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0016 Score=66.43 Aligned_cols=79 Identities=16% Similarity=0.174 Sum_probs=55.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
.+++|||+|.+|+++|..|+++ |.+|+++|+.+.. ......+.+.+ +++++.+....
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~--G~~V~~~d~~~~~-----------------~~~~~~~~l~~~gv~~~~~~~~~--- 74 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLEL--GARVTVVDDGDDE-----------------RHRALAAILEALGATVRLGPGPT--- 74 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchh-----------------hhHHHHHHHHHcCCEEEECCCcc---
Confidence 4699999999999999999998 8899999976421 01112233444 78776442111
Q ss_pred cccEEEeccCcEEEecEEEEecCCCCCCCCCC
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGASPRKIWYS 113 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~ 113 (454)
....+|.+|+++|..|..|...
T Consensus 75 ----------~~~~~D~Vv~s~Gi~~~~~~~~ 96 (480)
T PRK01438 75 ----------LPEDTDLVVTSPGWRPDAPLLA 96 (480)
T ss_pred ----------ccCCCCEEEECCCcCCCCHHHH
Confidence 1245899999999998877543
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00052 Score=71.02 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=34.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
++||||||+|.+|++||..+++. |.+|+|||+.+..++
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~--G~~v~liEk~~~~gG 43 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADS--GLEPLIVEKQDKVGG 43 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCCCc
Confidence 58999999999999999999998 899999999876543
|
|
| >KOG1335|consensus | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0015 Score=61.62 Aligned_cols=99 Identities=14% Similarity=0.142 Sum_probs=72.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||..||..+.-..++ |.+||++|-.+..... -+-++.....+.+.. ++.|..+ +|....
T Consensus 212 k~~~viG~G~IGLE~gsV~~rL--GseVT~VEf~~~i~~~----------mD~Eisk~~qr~L~kQgikF~l~tkv~~a~ 279 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRL--GSEVTVVEFLDQIGGV----------MDGEISKAFQRVLQKQGIKFKLGTKVTSAT 279 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhc--CCeEEEEEehhhhccc----------cCHHHHHHHHHHHHhcCceeEeccEEEEee
Confidence 4689999999999999999999 9999999988766432 122333344445555 9999755 888887
Q ss_pred Cccc---EEEecc---C--cEEEecEEEEecCCCCCCCCCC
Q psy1545 81 PRVN---CVITEK---Q--NRIKYKTLCICTGASPRKIWYS 113 (454)
Q Consensus 81 ~~~~---~v~~~~---g--~~i~~d~lviAtG~~p~~~~~~ 113 (454)
++.. .|++++ + +++++|.|++|+|-+|+.-...
T Consensus 280 ~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLg 320 (506)
T KOG1335|consen 280 RNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLG 320 (506)
T ss_pred ccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCC
Confidence 6544 334332 2 4799999999999999875543
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00046 Score=71.72 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=34.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
++||||||+|.||++||..+++. |.+|+|+|+.+..++
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~--G~~VivlEk~~~~gG 48 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAAR--GLDTLVVEKSAHFGG 48 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHC--CCcEEEEEcCCCCCc
Confidence 47999999999999999999998 899999999976543
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.018 Score=57.74 Aligned_cols=166 Identities=16% Similarity=0.114 Sum_probs=82.1
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCc-EEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCC-C
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVD-IVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKG-P 210 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~-V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~ 210 (454)
-.+++|||+|++|+-+|..|. |.. +.++++++.+-..+...- -+.+.- ..+.... ...+. +.. .
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~r-----y~~l~~---~~p~~~~-~~~~~---p~~~~ 75 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNR-----YPGLRL---DSPKWLL-GFPFL---PFRWD 75 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhcc-----CCceEE---CCchhee-ccCCC---ccCCc
Confidence 468999999999999999996 777 999998875443211100 000000 0000000 00000 010 0
Q ss_pred CCCCcccc-ccccccCccCC--ceEEEeCceEEEEEcCCCCccceEEEecCCcE--EecCEEEEeeccCcCcccccCCCC
Q psy1545 211 SLGPDWHT-QVNLHGSSRDT--KITIEYSCEVERIVDSEDDTCNAYVKLTNGHT--HACDIVVSAIGVVPNSNIQVHGTP 285 (454)
Q Consensus 211 ~l~~~~~~-~~~~~~~l~~~--gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~--~~~D~vi~a~G~~p~~~~~~~~~~ 285 (454)
..-+.... +-++.+.+++. -.++..++.|+.+..+++ +..+.|..+++.+ +.+|.||+|||.-.... +-.-.|
T Consensus 76 ~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~-~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~-iP~~~G 153 (443)
T COG2072 76 EAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDED-TKRWTVTTSDGGTGELTADFVVVATGHLSEPY-IPDFAG 153 (443)
T ss_pred ccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCC-CCeEEEEEcCCCeeeEecCEEEEeecCCCCCC-CCCCCC
Confidence 01111111 11122222222 234445555555555443 4478899988855 55999999999933221 112223
Q ss_pred ceecCCCceEeccc----cccccCceeecCcccc
Q psy1545 286 FELAPDCGIGVNEL----MQTSISNVYAAGDVCT 315 (454)
Q Consensus 286 l~~~~~g~i~vd~~----~~t~~~~Iya~GD~~~ 315 (454)
++. -.|.+.-... ..-.-++|-+||--++
T Consensus 154 ~~~-f~g~~~HS~~~~~~~~~~GKrV~VIG~GaS 186 (443)
T COG2072 154 LDE-FKGRILHSADWPNPEDLRGKRVLVIGAGAS 186 (443)
T ss_pred ccC-CCceEEchhcCCCccccCCCeEEEECCCcc
Confidence 321 2343332211 2234577888886544
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0026 Score=65.02 Aligned_cols=137 Identities=15% Similarity=0.179 Sum_probs=72.9
Q ss_pred CeEEEEcCchhHHHHHHHhc----CCcEEEEEeCCCccccc-cCC-cchhh-hHHHhhcc----CCCChhhhhhhc----
Q psy1545 136 KKIVVIGNGGIATELVHELS----NVDIVWVVKDKHISATF-LDP-GAAEF-FQDSINKT----NTAKPETIFKRM---- 200 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~~~~~~~-~d~-~~~~~-~~~~l~~~----~~~~~~~~~~~~---- 200 (454)
++|+|||+|+.|+-+|..|. ..+|++++++..+-.+. +.+ +.... +....... ...-..++....
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 58999999999999998885 45899999877654332 121 11111 11100000 000001111100
Q ss_pred ---ccccCCCCCCCCCCc-----cccc-cc-cccCccCCc--eEEEeCceEEEEEcCCCCccceEEEecC-CcEEecCEE
Q psy1545 201 ---RYNTGGEKGPSLGPD-----WHTQ-VN-LHGSSRDTK--ITIEYSCEVERIVDSEDDTCNAYVKLTN-GHTHACDIV 267 (454)
Q Consensus 201 ---~~~~~~~~~~~l~~~-----~~~~-~~-~~~~l~~~g--v~i~~~~~v~~i~~~~~~~~~~~v~~~~-g~~~~~D~v 267 (454)
.......-...+.|. +... +. +.+.+.+.| ++++.+++|+.++..++ .+.+.+++ |..+.+|.|
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~---g~~V~t~~gg~~i~aD~V 158 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNA---GVMLATNQDLPSETFDLA 158 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCC---EEEEEECCCCeEEEcCEE
Confidence 000000001122222 1111 11 123334555 78889999999987653 46677655 477999999
Q ss_pred EEeeccCc
Q psy1545 268 VSAIGVVP 275 (454)
Q Consensus 268 i~a~G~~p 275 (454)
|+|+|..+
T Consensus 159 VLAtGh~~ 166 (534)
T PRK09897 159 VIATGHVW 166 (534)
T ss_pred EECCCCCC
Confidence 99999854
|
|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00054 Score=71.49 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||||||||.||++||..+++. |.+|+|+||...
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~--G~~V~lveK~~~ 46 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEA--GLKTACITKVFP 46 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHc--CCcEEEEEccCC
Confidence 37999999999999999999997 889999999753
|
|
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00067 Score=68.99 Aligned_cols=42 Identities=19% Similarity=0.377 Sum_probs=36.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCCcccccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSGIVKAVTKT 45 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~~~~~~~~~ 45 (454)
++||+|||||++|++||++|++. |. +|+|+|+++..++....
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~--g~~~v~vlE~~~~~GG~~~~ 68 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEA--GIEDILILEATDRIGGRMRK 68 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc--CCCcEEEecCCCCCCCccee
Confidence 47899999999999999999998 76 69999999887765443
|
|
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00067 Score=62.60 Aligned_cols=37 Identities=32% Similarity=0.572 Sum_probs=34.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
+|++|||+|.+|+..|..|+++ |.+|.|+|+.++.++
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~--gk~VLIvekR~HIGG 38 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQL--GKRVLIVEKRNHIGG 38 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHc--CCEEEEEeccccCCC
Confidence 7999999999999999999998 999999999998764
|
|
| >KOG2853|consensus | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0032 Score=58.59 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhc--CCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFL--HPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~--~~g~~v~lie~~~~ 38 (454)
.||+|||||..|.+.|+.|.++ ..|.+|+++|+.+.
T Consensus 87 ~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 87 CDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 5899999999999999999875 34689999999853
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00056 Score=72.00 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=32.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
.+||||||||.||+.||..+++. |.+|+|+|+.+..
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~--G~~VivleK~~~~ 40 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQR--GLDTIVLSLVPAK 40 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHc--CCCEEEEeCCCCC
Confidence 47999999999999999999997 8999999987653
|
|
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00059 Score=69.25 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=33.8
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
+|+|||||++|+++|..|++. |.+|+|+|+++..++.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~--G~~v~v~E~~~~~GG~ 37 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDA--GHEVDIYESRSFIGGK 37 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCcEEEEEecCCCCce
Confidence 589999999999999999998 8999999999887653
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0017 Score=64.34 Aligned_cols=139 Identities=13% Similarity=0.125 Sum_probs=78.1
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccC-CcchhhhHHHhhccCCCChhhhhhhcccccC-CCCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLD-PGAAEFFQDSINKTNTAKPETIFKRMRYNTG-GEKGPS 211 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 211 (454)
-.|+|||+|+.|.-+|..|+ |.+|.++++++.+-.+... ..+.....+.+......+.........+.+. ......
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~ 83 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE 83 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence 36899999999999999997 8999999997765443222 2222222222221111000011111111111 000000
Q ss_pred C--CCccc----cccc-cccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 212 L--GPDWH----TQVN-LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 212 l--~~~~~----~~~~-~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
. ...+. .... +.+..++.|++++.++.+..+..+++ ..+.....++.++.++.||.|.|....
T Consensus 84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~--~~~~~~~~~~~e~~a~~vI~AdG~~s~ 153 (396)
T COG0644 84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDD--GVVVGVRAGDDEVRAKVVIDADGVNSA 153 (396)
T ss_pred cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCC--cEEEEEEcCCEEEEcCEEEECCCcchH
Confidence 0 00100 0011 23344778999999999999987663 233344444478999999999998654
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0058 Score=57.84 Aligned_cols=111 Identities=16% Similarity=0.150 Sum_probs=65.9
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCc-EEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCC-C
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVD-IVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP-S 211 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~-V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ 211 (454)
-.++|||+|+.|+-+|..+. +.+ +.+++.. ..-.. +.. ... +-..+.+.. .
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~-~~gg~-~~~--~~~---------------------venypg~~~~~ 58 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG-EPGGQ-LTK--TTD---------------------VENYPGFPGGI 58 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC-CcCCc-ccc--cee---------------------ecCCCCCccCC
Confidence 47999999999999998885 767 4444432 11100 000 000 000001111 1
Q ss_pred CCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 212 LGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 212 l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
.++++..+ +.+.....|+++.. ..+.+++..++ .+.|.+++++ ++++.||+|||..+...
T Consensus 59 ~g~~L~~~--~~~~a~~~~~~~~~-~~v~~v~~~~~---~F~v~t~~~~-~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 59 LGPELMEQ--MKEQAEKFGVEIVE-DEVEKVELEGG---PFKVKTDKGT-YEAKAVIIATGAGARKL 118 (305)
T ss_pred chHHHHHH--HHHHHhhcCeEEEE-EEEEEEeecCc---eEEEEECCCe-EEEeEEEECcCCcccCC
Confidence 22222222 12233457888888 57777777652 5788888887 99999999999988764
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0011 Score=67.38 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=30.8
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
+++++|||+|+.|+.+|..|+ |.+|+++++.+.+
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 689999999999999999886 9999999987754
|
|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00066 Score=70.68 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=32.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||||||+|.||++||.++++. |.+|+|+|+....
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~--G~~V~lleK~~~~ 42 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQS--GQSCALLSKVFPT 42 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHc--CCcEEEEEccCCC
Confidence 36999999999999999999997 8999999998543
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00098 Score=70.23 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=31.0
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
+++++|||+|+.|+.+|..|+ |.+|+++++.+.+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 689999999999999999886 9999999988754
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0016 Score=71.85 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=30.5
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
+++|+|||||+.|+.+|..|+ |.+|+++++.+.+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV 465 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 479999999999999999986 9999999987654
|
|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00084 Score=67.42 Aligned_cols=42 Identities=29% Similarity=0.507 Sum_probs=38.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKT 45 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~ 45 (454)
++||+|||||..|+.+|..++.+ |.+|+|+|++++..+...+
T Consensus 12 ~~DviVIGGGitG~GiArDaA~R--Gl~v~LvE~~D~AsGTSsr 53 (532)
T COG0578 12 EFDVIVIGGGITGAGIARDAAGR--GLKVALVEKGDLASGTSSR 53 (532)
T ss_pred CCCEEEECCchhhHHHHHHHHhC--CCeEEEEecCcccCcccCc
Confidence 58999999999999999999998 9999999999987765544
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0016 Score=66.33 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=56.0
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (454)
+++++|+|+|.+|+++|..|. |.+|+++++++. +....+.+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l--------------------------- 60 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAIL--------------------------- 60 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHH---------------------------
Confidence 789999999999999998886 999999986542 1122223334
Q ss_pred CCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 213 GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 213 ~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
++.||+++.+..+. ....+|+||+++|..|+.+
T Consensus 61 --------------~~~gv~~~~~~~~~-------------------~~~~~D~Vv~s~Gi~~~~~ 93 (480)
T PRK01438 61 --------------EALGATVRLGPGPT-------------------LPEDTDLVVTSPGWRPDAP 93 (480)
T ss_pred --------------HHcCCEEEECCCcc-------------------ccCCCCEEEECCCcCCCCH
Confidence 33799988775332 1245899999999999987
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0029 Score=61.41 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=38.6
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceE-EEecCCcEEecCEEEEeeccCcCc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAY-VKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~-v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
.+.+++.|++++++++|+++..+++ .+. |.+++|+ +.+|.||+|+|.....
T Consensus 154 ~~~~~~~Gv~i~~~~~V~~i~~~~~---~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 154 AAEAQRAGVEIRTGTEVTSIDVDGG---RVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHHHHHTT-EEEESEEEEEEEEETT---EEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred HHHHHHhhhhccccccccchhhccc---ccccccccccc-cccceeEeccccccee
Confidence 3444678999999999999998763 344 8999987 9999999999986543
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >KOG0685|consensus | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00088 Score=65.13 Aligned_cols=45 Identities=24% Similarity=0.300 Sum_probs=36.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPV 48 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~ 48 (454)
.+|||||||.||++||.+|.+.+ ..+++|+|.++..++-.+.-++
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle~g-f~~~~IlEa~dRIGGRI~ti~~ 66 (498)
T KOG0685|consen 22 AKIVIIGAGIAGLAAATRLLENG-FIDVLILEASDRIGGRIHTIPF 66 (498)
T ss_pred ceEEEECCchHHHHHHHHHHHhC-CceEEEEEeccccCceEeeEEc
Confidence 47999999999999999999772 5589999999888765444333
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0039 Score=62.46 Aligned_cols=138 Identities=11% Similarity=0.111 Sum_probs=71.3
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCC-cchhhhHHHhhccC--CCChhhhhhhccccc--CC-C
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDP-GAAEFFQDSINKTN--TAKPETIFKRMRYNT--GG-E 207 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~-~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~--~~-~ 207 (454)
-.++|||||+.|+-+|..|+ |.+|.++++.+.+-.+.... .+.....+.+.... .........+..+.+ .. .
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA 85 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence 37999999999999999987 99999999876542211100 11111111111000 000000000000100 00 0
Q ss_pred ----CC-CC--C--CCccc-cc--cc--cccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc
Q psy1545 208 ----KG-PS--L--GPDWH-TQ--VN--LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273 (454)
Q Consensus 208 ----~~-~~--l--~~~~~-~~--~~--~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~ 273 (454)
.. .. . ...+. .+ +. +.+..++.|++++.++.|+.+..+++ .+.....++.++.+|.||.|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~---~v~~v~~~~~~i~A~~VI~AdG~ 162 (429)
T PRK10015 86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGN---KVTGVQAGDDILEANVVILADGV 162 (429)
T ss_pred eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCC---EEEEEEeCCeEEECCEEEEccCc
Confidence 00 00 0 00010 01 00 23334667999999999999876542 23323344567999999999998
Q ss_pred CcC
Q psy1545 274 VPN 276 (454)
Q Consensus 274 ~p~ 276 (454)
...
T Consensus 163 ~s~ 165 (429)
T PRK10015 163 NSM 165 (429)
T ss_pred chh
Confidence 654
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0034 Score=62.65 Aligned_cols=140 Identities=21% Similarity=0.300 Sum_probs=74.5
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc------ccCCcchhhhHHH-hhccCCCChhhhhhhcccccC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT------FLDPGAAEFFQDS-INKTNTAKPETIFKRMRYNTG 205 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~------~~d~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~ 205 (454)
..+|+|||||+.|+-+|..|+ |.+|+++++.+..... .+.+...+.+.+. +.+...+.... .....+...
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~-~~~~~~~~~ 96 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGK-FRQIRLSDA 96 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCC-ccEEEEEeC
Confidence 457999999999999999997 9999999998754211 1222222222110 00000000000 000000000
Q ss_pred C-----CCCC-CCCCc---c---cccc--ccccCccC-CceEEEeCceEEEEEcCCCCccceEEEecC-C--cEEecCEE
Q psy1545 206 G-----EKGP-SLGPD---W---HTQV--NLHGSSRD-TKITIEYSCEVERIVDSEDDTCNAYVKLTN-G--HTHACDIV 267 (454)
Q Consensus 206 ~-----~~~~-~l~~~---~---~~~~--~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~-g--~~~~~D~v 267 (454)
. .+.. .+... + ...+ .+.+.+.+ .+++++.++++++++.+++ .+.+.+++ + .++++|+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~---~~~v~~~~~~~~~~i~adlv 173 (415)
T PRK07364 97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQD---AATVTLEIEGKQQTLQSKLV 173 (415)
T ss_pred CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC---eeEEEEccCCcceEEeeeEE
Confidence 0 0000 00000 0 0100 02222333 4899999999999977653 45566653 2 46999999
Q ss_pred EEeeccCcCcc
Q psy1545 268 VSAIGVVPNSN 278 (454)
Q Consensus 268 i~a~G~~p~~~ 278 (454)
|.|.|......
T Consensus 174 IgADG~~S~vR 184 (415)
T PRK07364 174 VAADGARSPIR 184 (415)
T ss_pred EEeCCCCchhH
Confidence 99999987653
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.004 Score=64.44 Aligned_cols=139 Identities=19% Similarity=0.309 Sum_probs=75.3
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc----ccCCcchhhhHHH-hhccCCCChhhhhhhcccccC-C
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT----FLDPGAAEFFQDS-INKTNTAKPETIFKRMRYNTG-G 206 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~----~~d~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~-~ 206 (454)
..+|+|||+|+.|+-+|..|. |.+|+++++.+.+... .+++...+.+... +.+...+... ......+... +
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~-~~~~~~~~~~~g 88 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTT-PNHGMRFLDAKG 88 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcc-cCCceEEEcCCC
Confidence 468999999999999999986 9999999998754321 1222222222110 0000000000 0000111000 0
Q ss_pred C----CC----CCCC-C---ccccc-c--ccccCccC-CceEEEeCceEEEEEcCCCCccceEEEec--CC--cEEecCE
Q psy1545 207 E----KG----PSLG-P---DWHTQ-V--NLHGSSRD-TKITIEYSCEVERIVDSEDDTCNAYVKLT--NG--HTHACDI 266 (454)
Q Consensus 207 ~----~~----~~l~-~---~~~~~-~--~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~~v~~~--~g--~~~~~D~ 266 (454)
. +. ...+ + .+.+. + .+.+.+.+ .|++++.++++++++.+++ .+.+.++ +| +++.+|+
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~---~v~v~~~~~~G~~~~i~ad~ 165 (538)
T PRK06183 89 RCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDD---GVTVTLTDADGQRETVRARY 165 (538)
T ss_pred CEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCC---eEEEEEEcCCCCEEEEEEEE
Confidence 0 00 0000 0 00000 0 01222333 4899999999999987664 4566665 46 5799999
Q ss_pred EEEeeccCcCc
Q psy1545 267 VVSAIGVVPNS 277 (454)
Q Consensus 267 vi~a~G~~p~~ 277 (454)
||-|.|.+...
T Consensus 166 vVgADG~~S~v 176 (538)
T PRK06183 166 VVGCDGANSFV 176 (538)
T ss_pred EEecCCCchhH
Confidence 99999987643
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0025 Score=63.03 Aligned_cols=44 Identities=32% Similarity=0.400 Sum_probs=35.8
Q ss_pred ceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 230 gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
++. +.++++.+++..++ .+.+.+++|+++.+|+||.|.|.....
T Consensus 126 ~~~-~~~~~v~~i~~~~~---~~~v~~~~g~~~~a~~vI~AdG~~S~v 169 (388)
T PRK07494 126 NIT-RFGDEAESVRPRED---EVTVTLADGTTLSARLVVGADGRNSPV 169 (388)
T ss_pred CcE-EECCeeEEEEEcCC---eEEEEECCCCEEEEeEEEEecCCCchh
Confidence 566 88999999976553 467888888899999999999997654
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0024 Score=63.74 Aligned_cols=35 Identities=23% Similarity=0.121 Sum_probs=31.1
Q ss_pred CCeEEEEcCchhHHHHHHHhc---CCcEEEEEeCCCcc
Q psy1545 135 AKKIVVIGNGGIATELVHELS---NVDIVWVVKDKHIS 169 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~---g~~V~~i~~~~~~~ 169 (454)
+++|+|||+|+.|+.+|..++ |.+|+++++.+.+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 789999999999999998653 89999999988664
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0043 Score=63.75 Aligned_cols=135 Identities=12% Similarity=0.191 Sum_probs=69.4
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc-ccCCcchh----hhHHHhhccCCCChhhhhhhc--ccccCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT-FLDPGAAE----FFQDSINKTNTAKPETIFKRM--RYNTGG 206 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~-~~d~~~~~----~~~~~l~~~~~~~~~~~~~~~--~~~~~~ 206 (454)
-.|+|||||..|+++|..++ |.+|.++++....... ...|.+.. .+.+.+..... ......... .+....
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg-~~g~~~d~~giq~r~ln 83 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGG-EMGKAIDKTGIQFRMLN 83 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCC-HHHHHHhhccCceeecc
Confidence 36999999999999999886 9999999987422111 01122211 11222211000 000000000 000000
Q ss_pred CC-CCCCC---Ccccccc---ccccCcc-CCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccC
Q psy1545 207 EK-GPSLG---PDWHTQV---NLHGSSR-DTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVV 274 (454)
Q Consensus 207 ~~-~~~l~---~~~~~~~---~~~~~l~-~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~ 274 (454)
.. ++... ..+.+.. .+.+.+. ..|++++. ..+.++..++ +....|.+.+|..+.|+.||+|+|..
T Consensus 84 ~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q-~~V~~Li~e~--grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 84 TSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQ-GEVEDLIVEN--GRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred cCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEecC--CEEEEEEECCCCEEECCEEEEeeCcc
Confidence 00 01000 0111111 1223333 34899865 4677776544 23566888899999999999999954
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0019 Score=70.21 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=30.3
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
+++|+|||||+.|+.+|..|+ |.+|+++++.+.+
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP 572 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 478999999999999999987 9999999987653
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.002 Score=63.79 Aligned_cols=135 Identities=19% Similarity=0.320 Sum_probs=74.3
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc------ccccCCcchhhhHH-----HhhccCCCChhhhhhhccc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS------ATFLDPGAAEFFQD-----SINKTNTAKPETIFKRMRY 202 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~------~~~~d~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~ 202 (454)
.+|+|||+|+.|+-+|..|+ |.+|+++++.+... ...+.+...+.+.+ .+.+. .. ......+
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~-~~----~~~~~~~ 77 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDRE-GL----VHDGIEL 77 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhc-CC----ccCcEEE
Confidence 57999999999999999986 99999999987521 11122222222221 11100 00 0000111
Q ss_pred ccCC-----CCCCCC-CCcc---ccc-c--ccccCccCCceEEEeCceEEEEEc-CCCCccceEEEe-cCC--cEEecCE
Q psy1545 203 NTGG-----EKGPSL-GPDW---HTQ-V--NLHGSSRDTKITIEYSCEVERIVD-SEDDTCNAYVKL-TNG--HTHACDI 266 (454)
Q Consensus 203 ~~~~-----~~~~~l-~~~~---~~~-~--~~~~~l~~~gv~i~~~~~v~~i~~-~~~~~~~~~v~~-~~g--~~~~~D~ 266 (454)
...+ .+.... +... .+. + .+.+...+.|+++++++++++++. +++ ...|.+ .+| .++.+|+
T Consensus 78 ~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~---~~~V~~~~~G~~~~i~ad~ 154 (392)
T PRK08243 78 RFDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSD---RPYVTYEKDGEEHRLDCDF 154 (392)
T ss_pred EECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCC---ceEEEEEcCCeEEEEEeCE
Confidence 1100 000000 0000 010 0 122223557999999999999876 332 345666 466 3689999
Q ss_pred EEEeeccCcCcc
Q psy1545 267 VVSAIGVVPNSN 278 (454)
Q Consensus 267 vi~a~G~~p~~~ 278 (454)
||-|-|.+....
T Consensus 155 vVgADG~~S~vR 166 (392)
T PRK08243 155 IAGCDGFHGVSR 166 (392)
T ss_pred EEECCCCCCchh
Confidence 999999987654
|
|
| >KOG2614|consensus | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00095 Score=63.91 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=33.3
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
|+.+|||||||.+|+++|..|.++ |.+|+|+|+...+
T Consensus 1 ~~~~VvIvGgGI~Gla~A~~l~r~--G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 1 KEPKVVIVGGGIVGLATALALHRK--GIDVVVLESREDP 37 (420)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHc--CCeEEEEeecccc
Confidence 356899999999999999999998 9999999997554
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0017 Score=68.55 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=30.8
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
+++++|||+|+.|+.+|..|+ |.+|+++++.+.+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 579999999999999999987 9999999987764
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00085 Score=69.66 Aligned_cols=36 Identities=31% Similarity=0.564 Sum_probs=32.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
++||||||+|.||++||..+++. + +|+|+|+.+..+
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~--G-~VvlleK~~~~g 64 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEY--G-TVAIITKDEPHE 64 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhC--C-CEEEEECCCCCC
Confidence 47999999999999999999997 7 899999987643
|
|
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0011 Score=64.52 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=34.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
..||||||+|.+||++|++|.+. |++|+|+|..+..++
T Consensus 7 ~~~viivGaGlaGL~AA~eL~ka--G~~v~ilEar~r~GG 44 (450)
T COG1231 7 TADVIIVGAGLAGLSAAYELKKA--GYQVQILEARDRVGG 44 (450)
T ss_pred CCcEEEECCchHHHHHHHHHhhc--CcEEEEEeccCCcCc
Confidence 36899999999999999999998 999999999987754
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.001 Score=66.65 Aligned_cols=138 Identities=12% Similarity=0.147 Sum_probs=27.7
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc-------cCCcc-----hhhhHHHhhccCCCChhhhhhhccc
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF-------LDPGA-----AEFFQDSINKTNTAKPETIFKRMRY 202 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~-------~d~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~ 202 (454)
.|+|||||+.|+-+|..++ |.+|.|+++.+.+-... ++..- ..-+...+.+ .+......
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~-------~~~~~~~~ 73 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLN-------RLRARGGY 73 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHH-------ST------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHH-------HHhhhccc
Confidence 3899999999999998886 99999999988653211 11100 0111111111 00000000
Q ss_pred ccCCCCC----CCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC--C-cEEecCEEEEeeccCc
Q psy1545 203 NTGGEKG----PSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN--G-HTHACDIVVSAIGVVP 275 (454)
Q Consensus 203 ~~~~~~~----~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~--g-~~~~~D~vi~a~G~~p 275 (454)
....... ..+.++..... +.+.+++.|+++++++.+.++..++ ++...|.+.+ | .++.++.+|-|||.-
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~-l~~~l~e~gv~v~~~t~v~~v~~~~--~~i~~V~~~~~~g~~~i~A~~~IDaTG~g- 149 (428)
T PF12831_consen 74 PQEDRYGWVSNVPFDPEVFKAV-LDEMLAEAGVEVLLGTRVVDVIRDG--GRITGVIVETKSGRKEIRAKVFIDATGDG- 149 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccc-ccccccccccccccccccccccccc--ccccccccccccccccccccccccccccc-
Confidence 0000000 11223322221 3445577899999999999998765 3355555543 3 779999999999952
Q ss_pred CcccccCCCCcee
Q psy1545 276 NSNIQVHGTPFEL 288 (454)
Q Consensus 276 ~~~~~~~~~~l~~ 288 (454)
+ ++..+|++.
T Consensus 150 --~-l~~~aG~~~ 159 (428)
T PF12831_consen 150 --D-LAALAGAPY 159 (428)
T ss_dssp -------------
T ss_pred --c-ccccccccc
Confidence 3 455555444
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0011 Score=68.61 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=34.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
++||||||+| +|++||..+++. |.+|+|||+.+..++.
T Consensus 16 e~DvvvvG~G-~G~~aA~~a~~~--G~~v~v~Ek~~~~GG~ 53 (564)
T PRK12845 16 TVDLLVVGSG-TGMAAALAAHEL--GLSVLIVEKSSYVGGS 53 (564)
T ss_pred eeCEEEECCc-HHHHHHHHHHHC--CCcEEEEecCCCCcCc
Confidence 5899999999 899999999998 9999999998776553
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0015 Score=69.10 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=31.0
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
.+++++|||+|+.|+.+|..|+ |.+|+++++.+.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3689999999999999999986 9999999987654
|
|
| >KOG2960|consensus | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00027 Score=61.05 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=34.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
.||||||+|.+|++||+.+.+..|+.+|.+||.+-.++
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG 114 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG 114 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence 58999999999999999999888999999999986554
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0054 Score=59.25 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
.+|+|||||..+..++..|.+..+..+|+++.+++.+
T Consensus 191 ~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 191 KRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF 227 (341)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred CeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence 5799999999999999999998666799999998654
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0065 Score=53.27 Aligned_cols=191 Identities=14% Similarity=0.118 Sum_probs=100.1
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc------c----CCcchhhhHHHhhccCCCChhhhhhhccc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF------L----DPGAAEFFQDSINKTNTAKPETIFKRMRY 202 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~------~----d~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 202 (454)
-..++|+|+|++|+-+|..|+ |.+|.+++|+-.+-... | -.+.++.+.+.+ .+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~---------------gI 94 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEF---------------GI 94 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHh---------------CC
Confidence 468999999999999999997 99999999866443221 1 111222222222 11
Q ss_pred ccCCCCCCCCC----CccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec-----------CCcEEecCEE
Q psy1545 203 NTGGEKGPSLG----PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT-----------NGHTHACDIV 267 (454)
Q Consensus 203 ~~~~~~~~~l~----~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~-----------~g~~~~~D~v 267 (454)
...+ ...-+. .+... .+....-+.|.+++..+.++.+.-.++ .+...+..+ |--.+++++|
T Consensus 95 ~ye~-~e~g~~v~ds~e~~s--kl~~~a~~aGaki~n~~~veDvi~r~~-~rVaGvVvNWt~V~~~~lhvDPl~i~a~~V 170 (262)
T COG1635 95 RYEE-EEDGYYVADSAEFAS--KLAARALDAGAKIFNGVSVEDVIVRDD-PRVAGVVVNWTPVQMAGLHVDPLTIRAKAV 170 (262)
T ss_pred ccee-cCCceEEecHHHHHH--HHHHHHHhcCceeeecceEEEEEEecC-CceEEEEEecchhhhcccccCcceeeEEEE
Confidence 1110 000000 00000 011222457899999999998765443 123333332 2246889999
Q ss_pred EEeeccCcCcccccCC----CCceecCCCceEec--cc-----cccccCceeecCcccccCCccccchhhccChHHH-HH
Q psy1545 268 VSAIGVVPNSNIQVHG----TPFELAPDCGIGVN--EL-----MQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQA-KH 335 (454)
Q Consensus 268 i~a~G~~p~~~~~~~~----~~l~~~~~g~i~vd--~~-----~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A-~~ 335 (454)
+-|||.....-.++.. .+.++-..+....+ +. .+--+||+|++|=.+..- ...+ .+.-..-+ ..
T Consensus 171 vDaTGHda~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av-~G~p---RMGPiFGgMll 246 (262)
T COG1635 171 VDATGHDAEVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAV-HGLP---RMGPIFGGMLL 246 (262)
T ss_pred EeCCCCchHHHHHHHHhccccccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhh-cCCc---ccCchhhhhhh
Confidence 9999997654212221 11222111222222 11 122479999999766532 1111 01111222 35
Q ss_pred HHHHHHhhhcCCC
Q psy1545 336 MGTYAAKCMVGAV 348 (454)
Q Consensus 336 ~g~~aa~~i~~~~ 348 (454)
.|+.||+-++.++
T Consensus 247 SGkkaAe~i~e~L 259 (262)
T COG1635 247 SGKKAAEEILEKL 259 (262)
T ss_pred chHHHHHHHHHHh
Confidence 6788887776544
|
|
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0011 Score=69.91 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=34.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
.+|+|||||++|++||..|++. |++|+|+|+.+..++.
T Consensus 161 ~~v~viGaG~aGl~aA~~l~~~--g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 161 GSVIIVGAGLAGLAAARQLLSF--GFKVVVLEGRNRPGGR 198 (738)
T ss_pred CCEEEECcCHHHHHHHHHHHHc--CCcEEEEecCccCcCc
Confidence 6899999999999999999998 9999999998876653
|
|
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0012 Score=68.05 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=34.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
++|+|||||++|+++|+.|++. |++|+|+|+.+..++
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~--g~~v~i~E~~~~~gG 112 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRPFIGG 112 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCeeEEEecCCCCCC
Confidence 5899999999999999999998 899999999988765
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0066 Score=59.51 Aligned_cols=129 Identities=12% Similarity=0.169 Sum_probs=67.0
Q ss_pred eEEEEcCchhHHHHHHHhc----CCcEEEEEeCCCcccc----ccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCC
Q psy1545 137 KIVVIGNGGIATELVHELS----NVDIVWVVKDKHISAT----FLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEK 208 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~~~~~~----~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (454)
.++|||||..|+.+|..|. |.+|.++++.+.+.+. +++.+..+.....+...- ...+- ...+.+ ...
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v--~~~W~--~~~v~~-~~~ 75 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLV--QTDWP--GYEVRF-PKY 75 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhh--eEeCC--CCEEEC-cch
Confidence 3789999999999998885 7899999987643321 223333222211111000 00000 001111 001
Q ss_pred CCCCCCccc--cccccccCc-cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 209 GPSLGPDWH--TQVNLHGSS-RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 209 ~~~l~~~~~--~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
...+...+. .+..+.+.+ +..+..++.++.|.++..+. +.+++|+++.+|.||.|.|.++..
T Consensus 76 ~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~-------v~l~dg~~~~A~~VI~A~G~~s~~ 140 (370)
T TIGR01789 76 RRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADG-------VDLAPGTRINARSVIDCRGFKPSA 140 (370)
T ss_pred hhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCE-------EEECCCCEEEeeEEEECCCCCCCc
Confidence 111111110 000011111 22233377788999884322 555788999999999999988643
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0034 Score=61.75 Aligned_cols=45 Identities=13% Similarity=0.318 Sum_probs=37.2
Q ss_pred ceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 230 gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
+++++++++++++..+++ .+.+.++++ ++.+|+||-|-|......
T Consensus 119 ~v~~~~~~~v~~i~~~~~---~v~v~~~~~-~~~adlvIgADG~~S~vR 163 (374)
T PRK06617 119 LITLIDNNQYQEVISHND---YSIIKFDDK-QIKCNLLIICDGANSKVR 163 (374)
T ss_pred CcEEECCCeEEEEEEcCC---eEEEEEcCC-EEeeCEEEEeCCCCchhH
Confidence 599999999999877653 466788776 899999999999987654
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0058 Score=60.41 Aligned_cols=130 Identities=13% Similarity=0.139 Sum_probs=69.2
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhh--c-ccccCCCCCCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKR--M-RYNTGGEKGPS 211 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~--~-~~~~~~~~~~~ 211 (454)
.|+|||+|+.|+-+|..+. |.+|+++++.+.+... .........+.+.. . ....... . ...........
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~----~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 74 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN----HTYGVWDDDLSDLG-L-ADCVEHVWPDVYEYRFPKQPRK 74 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC----ccccccHhhhhhhc-h-hhHHhhcCCCceEEecCCcchh
Confidence 3799999999999998886 9999999987643211 00000000110000 0 0000000 0 00000000000
Q ss_pred CCCccc--cc----cccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 212 LGPDWH--TQ----VNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 212 l~~~~~--~~----~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
+...+. .+ ..+.+.+.+.|++++. ..+..+...++ ....+.+++|+++.++.||.|+|..+
T Consensus 75 ~~~~~~~i~~~~l~~~l~~~~~~~gv~~~~-~~v~~i~~~~~--~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 75 LGTAYGSVDSTRLHEELLQKCPEGGVLWLE-RKAIHAEADGV--ALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred cCCceeEEcHHHHHHHHHHHHHhcCcEEEc-cEEEEEEecCC--ceeEEEeCCCCEEEeCEEEECCCCch
Confidence 111110 00 0123334556898864 47888776531 24667788888899999999999876
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0068 Score=62.85 Aligned_cols=34 Identities=21% Similarity=0.457 Sum_probs=30.2
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
..+|+|||||+.|+-+|..|+ |.+|+++++.+..
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~ 42 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGT 42 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 468999999999999999997 9999999987653
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.005 Score=61.30 Aligned_cols=140 Identities=16% Similarity=0.228 Sum_probs=72.7
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc----ccCCcchhhhHHHhh--ccCCCChhhhhhhcccccCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT----FLDPGAAEFFQDSIN--KTNTAKPETIFKRMRYNTGG 206 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~----~~d~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~ 206 (454)
..+|+|||||++|+-+|..|+ |.+|+++++.+..... .+.+...+.+.. +. +............+.+....
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~-lG~~~~~~~~~~~~~~~~~~~~~~ 84 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDE-LGLLERFLELPHQKVRTLRFEIGG 84 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHH-cCChhHHhhcccceeeeEEEEECC
Confidence 457999999999999999986 9999999987643211 112221112211 10 00000000000011111000
Q ss_pred C------C-----CCCCCCccccc-c--ccccCcc-CCceEEEeCceEEEEEcCCCCccc--eEEEecCCc-EEecCEEE
Q psy1545 207 E------K-----GPSLGPDWHTQ-V--NLHGSSR-DTKITIEYSCEVERIVDSEDDTCN--AYVKLTNGH-THACDIVV 268 (454)
Q Consensus 207 ~------~-----~~~l~~~~~~~-~--~~~~~l~-~~gv~i~~~~~v~~i~~~~~~~~~--~~v~~~~g~-~~~~D~vi 268 (454)
. + ...++..+... + .+.+.+. ..|++++.++.+.++..+++ .. +.+..++|+ ++.+|+||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~--~v~~v~~~~~~g~~~i~a~~vI 162 (407)
T PRK06185 85 RTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGG--RVTGVRARTPDGPGEIRADLVV 162 (407)
T ss_pred eEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCC--EEEEEEEEcCCCcEEEEeCEEE
Confidence 0 0 00111001100 0 0122222 35899999999999986653 22 234445664 79999999
Q ss_pred EeeccCcCc
Q psy1545 269 SAIGVVPNS 277 (454)
Q Consensus 269 ~a~G~~p~~ 277 (454)
.|.|.....
T Consensus 163 ~AdG~~S~v 171 (407)
T PRK06185 163 GADGRHSRV 171 (407)
T ss_pred ECCCCchHH
Confidence 999987643
|
|
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0013 Score=69.76 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=34.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
.+|+|||||++|++||+.|.+. |++|+|+|+++.+++.
T Consensus 239 ~~v~IiGaG~aGl~aA~~L~~~--g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 239 ANVVVVGAGLAGLVAARQLLSM--GFKVVVLEGRARPGGR 276 (808)
T ss_pred CCEEEECcCHHHHHHHHHHHHC--CCcEEEEeccccCCCc
Confidence 6899999999999999999997 8999999999877653
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0015 Score=67.69 Aligned_cols=50 Identities=22% Similarity=0.193 Sum_probs=39.1
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~ 273 (454)
.+.+++.|.+|++++.|++|+.+++ +....+.+.+|+++++|.||+|++.
T Consensus 315 ~~~l~~~G~~I~l~~~V~~I~~~~~-g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 315 VDHFQSLGGEVRLNSRIKKIELNDD-GTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHhcCCEEEeCCeeeEEEECCC-CcEEEEEECCCcEEECCEEEECCCH
Confidence 3444568999999999999987543 3345577788989999999999754
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0051 Score=61.42 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=29.6
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS 169 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~ 169 (454)
+|+|||||+.|+-+|..|. |.+|+++++.+.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 36 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELR 36 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence 6899999999999999986 99999999987543
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.011 Score=50.11 Aligned_cols=42 Identities=31% Similarity=0.356 Sum_probs=32.0
Q ss_pred CceEEE-eCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc
Q psy1545 229 TKITIE-YSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273 (454)
Q Consensus 229 ~gv~i~-~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~ 273 (454)
.|+++. ...+|+.+...++ ...+.+.+|..+.+|.||+|+|.
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~---~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDD---GYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCC---cEEEEECCCCEEEeCEEEECCCC
Confidence 454443 2347888888764 46788899999999999999996
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0067 Score=62.92 Aligned_cols=135 Identities=19% Similarity=0.311 Sum_probs=73.1
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc----ccCCcchhhhHH-----HhhccCCCChhhhhhhcccc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT----FLDPGAAEFFQD-----SINKTNTAKPETIFKRMRYN 203 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~----~~d~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~ 203 (454)
..+|+|||+|+.|+-+|..|. |.+|+++++.+.+... .+.+...+.+.+ .+.+. .. . .......
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~-~~---~-~~~~~~~ 97 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDK-GV---S-WNVGKVF 97 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhh-Cc---e-eeceeEE
Confidence 457999999999999999986 9999999988754321 012222222111 01000 00 0 0000000
Q ss_pred cCC------CCCCCCC---Ccc--ccccc----cccCccC-CceEEEeCceEEEEEcCCCCccceEEEe--cCCc-EEec
Q psy1545 204 TGG------EKGPSLG---PDW--HTQVN----LHGSSRD-TKITIEYSCEVERIVDSEDDTCNAYVKL--TNGH-THAC 264 (454)
Q Consensus 204 ~~~------~~~~~l~---~~~--~~~~~----~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~~v~~--~~g~-~~~~ 264 (454)
... ....... +.. ..+.. +.+.+.+ .++++++++++++++.+++ .+.+.+ .+|+ ++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~---~v~v~~~~~~g~~~i~a 174 (547)
T PRK08132 98 LRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDD---GVTLTVETPDGPYTLEA 174 (547)
T ss_pred eCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCC---EEEEEEECCCCcEEEEe
Confidence 000 0000000 000 01101 2233333 4799999999999987654 343443 3554 6999
Q ss_pred CEEEEeeccCcCc
Q psy1545 265 DIVVSAIGVVPNS 277 (454)
Q Consensus 265 D~vi~a~G~~p~~ 277 (454)
|+||.|.|.....
T Consensus 175 d~vVgADG~~S~v 187 (547)
T PRK08132 175 DWVIACDGARSPL 187 (547)
T ss_pred CEEEECCCCCcHH
Confidence 9999999987654
|
|
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0017 Score=67.41 Aligned_cols=38 Identities=18% Similarity=0.414 Sum_probs=34.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
++||+|||+|.+|++||..+++. +.+|+|||+.+..++
T Consensus 8 ~~dv~ViG~G~aG~~aa~~~~~~--g~~v~~iek~~~~gg 45 (572)
T PRK12839 8 TYDVVVVGSGAGGLSAAVAAAYG--GAKVLVVEKASTCGG 45 (572)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCCCc
Confidence 47999999999999999999998 899999999876543
|
|
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0016 Score=67.58 Aligned_cols=36 Identities=36% Similarity=0.556 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+|+||||||+||+.+|.+|++. ++.+|+|||+.+.
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~-~g~~VlvlEaG~~ 40 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSED-PDVSVLLLEAGGP 40 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhC-CCCeEEEecCCCc
Confidence 58999999999999999999993 4999999999964
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.011 Score=57.49 Aligned_cols=134 Identities=15% Similarity=0.208 Sum_probs=71.6
Q ss_pred eEEEEcCchhHHHHHHHhc-CCcEEEEEeCCCcc--------ccccCCcchhhhHHHhhccCCCChhhhhhhc------c
Q psy1545 137 KIVVIGNGGIATELVHELS-NVDIVWVVKDKHIS--------ATFLDPGAAEFFQDSINKTNTAKPETIFKRM------R 201 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~-g~~V~~i~~~~~~~--------~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~------~ 201 (454)
.|+|||+|+.|+-+|..|+ ..+|+++++.+... ...+.+. ..+.|.+............. .
T Consensus 3 dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~~~~~~~~~~~g~~l~~~----~~~~L~~lgl~~~~~~~~~~~~~~~~~ 78 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGKMKVIAIDKKHQCGTEGFSKPCGGLLAPD----AQKSFAKDGLTLPKDVIANPQIFAVKT 78 (351)
T ss_pred eEEEECCCHHHHHHHHHHhccCCEEEEECCCccccccccCcCcCccCHH----HHHHHHHcCCCCCcceeeccccceeeE
Confidence 6899999999999999886 58999999887432 1112222 22222211000000000000 0
Q ss_pred cccCCCCCCCCCCcc--cccccccc---CccCCceEEEeCceEEEEEcCCCCccceEEEe-cCCc--EEecCEEEEeecc
Q psy1545 202 YNTGGEKGPSLGPDW--HTQVNLHG---SSRDTKITIEYSCEVERIVDSEDDTCNAYVKL-TNGH--THACDIVVSAIGV 273 (454)
Q Consensus 202 ~~~~~~~~~~l~~~~--~~~~~~~~---~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~-~~g~--~~~~D~vi~a~G~ 273 (454)
+..........+... -.+..+.+ ...+.|++++.++.+++++..++ .+.+.+ ++|+ ++.+|+||.|.|.
T Consensus 79 ~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~---~~~v~~~~~g~~~~i~a~~vV~AdG~ 155 (351)
T PRK11445 79 IDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDD---GYHVIFRADGWEQHITARYLVGADGA 155 (351)
T ss_pred ecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCC---EEEEEEecCCcEEEEEeCEEEECCCC
Confidence 000000000011010 00100111 12346899999999999987653 355654 5664 6899999999999
Q ss_pred CcCc
Q psy1545 274 VPNS 277 (454)
Q Consensus 274 ~p~~ 277 (454)
....
T Consensus 156 ~S~v 159 (351)
T PRK11445 156 NSMV 159 (351)
T ss_pred CcHH
Confidence 7654
|
|
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0012 Score=61.48 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=35.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKT 45 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~ 45 (454)
++|+|||+|.+||+||..|.+ -++|+|+|.....++..+.
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~---rhdVTLfEA~~rlGGha~T 48 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSR---RHDVTLFEADRRLGGHANT 48 (447)
T ss_pred cceEEEcccchhhhhHHhhhc---ccceEEEeccccccCccce
Confidence 689999999999999999998 4699999999988765443
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0038 Score=61.79 Aligned_cols=131 Identities=12% Similarity=0.198 Sum_probs=68.4
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeC-CCccccccCCcchhhhHHHhhccCCCChhhhh---hhcccccCCC--C
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKD-KHISATFLDPGAAEFFQDSINKTNTAKPETIF---KRMRYNTGGE--K 208 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~-~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~--~ 208 (454)
.|+|||||+.|+-+|..|+ |.+|.++++. +...+ ....+.....+.+. ..+ .... ....+..... +
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~--cg~~i~~~~l~~l~---i~~-~~~~~~~~~~~~~~~~~~~~ 75 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKP--CGGAIPPCLIEEFD---IPD-SLIDRRVTQMRMISPSRVPI 75 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCc--CcCCcCHhhhhhcC---Cch-HHHhhhcceeEEEcCCCcee
Confidence 5899999999999999887 9999999987 32211 11111111111110 000 0000 0111111000 0
Q ss_pred CCCCC--Ccc---ccccc----cccCccCCceEEEeCceEEEEEcCCCCccceEEEecC------C--cEEecCEEEEee
Q psy1545 209 GPSLG--PDW---HTQVN----LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN------G--HTHACDIVVSAI 271 (454)
Q Consensus 209 ~~~l~--~~~---~~~~~----~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~------g--~~~~~D~vi~a~ 271 (454)
...+. ..+ ..+.. +.+...+.|++++.+ .++++..+++ .+.+.+.+ | .++.+|+||.|.
T Consensus 76 ~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~---~~~v~~~~~~~~~~~~~~~i~a~~VI~Ad 151 (388)
T TIGR02023 76 KVTIPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRD---GVTLTYRTPKKGAGGEKGSVEADVVIGAD 151 (388)
T ss_pred eeccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCC---eEEEEEEeccccCCCcceEEEeCEEEECC
Confidence 00000 111 11111 223335579999866 5888876553 45565543 2 479999999999
Q ss_pred ccCcCc
Q psy1545 272 GVVPNS 277 (454)
Q Consensus 272 G~~p~~ 277 (454)
|.....
T Consensus 152 G~~S~v 157 (388)
T TIGR02023 152 GANSPV 157 (388)
T ss_pred CCCcHH
Confidence 986643
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0019 Score=72.63 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=34.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
+.||||||+|.||++||.++++. |.+|+|+|+.+..++
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~--Ga~VivlEK~~~~GG 446 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASC--GAQVILLEKEAKLGG 446 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCcEEEEEccCCCCC
Confidence 47999999999999999999998 999999999876543
|
|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0021 Score=65.56 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=34.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
+||+|||+|++|+.+|+.|++. +.+|++||+....+.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~--g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA--GLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC--CCeEEEEeccCccCC
Confidence 6999999999999999999998 899999999987653
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.012 Score=60.51 Aligned_cols=138 Identities=12% Similarity=0.206 Sum_probs=69.9
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc-ccCCcc----hhhhHHHhhccCCCChhhh-hhhcccccC-CC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT-FLDPGA----AEFFQDSINKTNTAKPETI-FKRMRYNTG-GE 207 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~-~~d~~~----~~~~~~~l~~~~~~~~~~~-~~~~~~~~~-~~ 207 (454)
.++|||+|..|+++|..++ |.+|.++++....... ...+.. ...+.+.+......-.... .....+... ..
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 4899999999999999986 9999999986422110 001111 1111122211000000000 000001100 00
Q ss_pred CCCCCC-C--cccccc---ccccCccCC-ceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 208 KGPSLG-P--DWHTQV---NLHGSSRDT-KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 208 ~~~~l~-~--~~~~~~---~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
.++.+. + .+.+.. .+.+.+++. +++++.+ .+.++...++ +....|.+.+|..+.||.||+|+|.-.+
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~-g~V~GV~t~~G~~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDN-DEIKGVVTQDGLKFRAKAVIITTGTFLR 155 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecC-CcEEEEEECCCCEEECCEEEEccCcccC
Confidence 011110 0 111111 122334444 8888876 5666643311 2366788889989999999999999854
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0094 Score=58.60 Aligned_cols=125 Identities=16% Similarity=0.243 Sum_probs=71.4
Q ss_pred EEEEcCchhHHHHHHHh--c--CCcEEEEEeCCCc--ccc----ccCCcchhhhHHHhhccCCCChhhhhhhcccccCCC
Q psy1545 138 IVVIGNGGIATELVHEL--S--NVDIVWVVKDKHI--SAT----FLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGE 207 (454)
Q Consensus 138 vvVvG~G~~g~e~a~~l--~--g~~V~~i~~~~~~--~~~----~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (454)
++|||+|+.|+-+|..| . |.+|.++++.+.. ... +..++... +.+.... .+- ...+.+..
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~-~~~~v~~------~w~--~~~v~~~~- 71 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGP-LDSLVSH------RWS--GWRVYFPD- 71 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccc-hHHHHhe------ecC--ceEEEeCC-
Confidence 78999999999999999 4 8999999976654 111 11222111 1121111 000 11111111
Q ss_pred CCCCCCC-cc--ccccc----cccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 208 KGPSLGP-DW--HTQVN----LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 208 ~~~~l~~-~~--~~~~~----~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
....+.. .+ -.+.. +.+.+...| .++.+..|.+++..++ ...+.+++|.++.++.|+-|.|..+.
T Consensus 72 ~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~---~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 72 GSRILIDYPYCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGD---GVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred CceEEcccceEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCc---eEEEEECCCCEEEeeEEEECCCcccc
Confidence 1111111 11 01111 223334334 5667789999998763 56788999999999999999996654
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0027 Score=66.15 Aligned_cols=40 Identities=35% Similarity=0.443 Sum_probs=35.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT 43 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~ 43 (454)
++||+|||+|.+|++||..+++. |.+|+|||+.+..++..
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~--g~~v~l~ek~~~~gg~~ 55 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIA--GLKVLLVERTEYVGGTT 55 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCCCCcc
Confidence 47999999999999999999998 89999999987765443
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0083 Score=59.36 Aligned_cols=137 Identities=18% Similarity=0.290 Sum_probs=73.2
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccc------cccCCcchhhhHH-----HhhccCCCChhhhhhhcc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISA------TFLDPGAAEFFQD-----SINKTNTAKPETIFKRMR 201 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~------~~~d~~~~~~~~~-----~l~~~~~~~~~~~~~~~~ 201 (454)
..+|+|||||+.|+-+|..|. |.+|+++++.+...+ ..+.+...+.+.+ .+.+. .. ......
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~-~~----~~~~~~ 76 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDRE-GL----VHEGTE 76 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhc-Cc----eecceE
Confidence 467999999999999999986 999999999875211 1122221122211 11100 00 000000
Q ss_pred cccCC-----CCCCCCC-Cc--cccc----cccccCccCCceEEEeCceEEEEEcCCCCccceEEEec-CCc--EEecCE
Q psy1545 202 YNTGG-----EKGPSLG-PD--WHTQ----VNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT-NGH--THACDI 266 (454)
Q Consensus 202 ~~~~~-----~~~~~l~-~~--~~~~----~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~-~g~--~~~~D~ 266 (454)
+.... .+..... .. ...+ ..+.+.+.+.|+.++++..+.++...++ ....|.+. +|+ ++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~--~~~~V~~~~~g~~~~i~adl 154 (390)
T TIGR02360 77 IAFDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAG--DRPYVTFERDGERHRLDCDF 154 (390)
T ss_pred EeeCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCC--CccEEEEEECCeEEEEEeCE
Confidence 00000 0000000 00 0000 0123334556899999988777754221 13456664 774 689999
Q ss_pred EEEeeccCcCcc
Q psy1545 267 VVSAIGVVPNSN 278 (454)
Q Consensus 267 vi~a~G~~p~~~ 278 (454)
||-|-|.+....
T Consensus 155 vIGADG~~S~VR 166 (390)
T TIGR02360 155 IAGCDGFHGVSR 166 (390)
T ss_pred EEECCCCchhhH
Confidence 999999987553
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0066 Score=59.95 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=29.5
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS 169 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~ 169 (454)
+|+|||||..|+|+|..|+ |.+|+++++++...
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 6899999999999999986 99999999877643
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0044 Score=64.45 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=30.9
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
.+++|+|||+|++|+.+|..+. |.+|+++++.+.+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4789999999999999999886 9999999987654
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.016 Score=60.53 Aligned_cols=42 Identities=31% Similarity=0.367 Sum_probs=34.7
Q ss_pred EEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 233 IEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 233 i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
++.+++|++++..++ .+++.+++|+++.+|+||.|-|.....
T Consensus 209 i~~g~~V~~I~~~~d---~VtV~~~dG~ti~aDlVVGADG~~S~v 250 (668)
T PLN02927 209 IRNESNVVDFEDSGD---KVTVVLENGQRYEGDLLVGADGIWSKV 250 (668)
T ss_pred EEcCCEEEEEEEeCC---EEEEEECCCCEEEcCEEEECCCCCcHH
Confidence 677889999986653 577889999889999999999987644
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0067 Score=60.11 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=38.4
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
.|++++.+++++++...++ .+.+.+++|.++.+|.||.|.|.....
T Consensus 126 ~g~~~~~~~~v~~i~~~~~---~~~v~~~~g~~~~a~~vI~AdG~~S~v 171 (395)
T PRK05732 126 PGVTLHCPARVANVERTQG---SVRVTLDDGETLTGRLLVAADGSHSAL 171 (395)
T ss_pred CCcEEEcCCEEEEEEEcCC---eEEEEECCCCEEEeCEEEEecCCChhh
Confidence 5899999999999976543 466888888889999999999997653
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.02 Score=56.81 Aligned_cols=31 Identities=13% Similarity=0.381 Sum_probs=28.0
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
+|+|||||+.|+-+|..++ |.+|.++++...
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 6899999999999999887 999999998754
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.02 Score=63.51 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=63.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCC-CeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPG-ESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAI 79 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g-~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i 79 (454)
.+++|||+|+.|+.+|..|++. + ..|+|++..+... ....+.+.+ +|+++.+ .+..+
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~--G~~vV~vv~~~~~~~------------------~~l~~~L~~~GV~i~~~~~v~~i 377 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAA--GIAVVAIIDARADVS------------------PEARAEARELGIEVLTGHVVAAT 377 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCceEEEEccCcchh------------------HHHHHHHHHcCCEEEcCCeEEEE
Confidence 4799999999999999999998 7 4688998765321 112344555 8999866 67777
Q ss_pred eCccc--EEEec----cCcEEEecEEEEecCCCCCC
Q psy1545 80 DPRVN--CVITE----KQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 80 ~~~~~--~v~~~----~g~~i~~d~lviAtG~~p~~ 109 (454)
..+.. .|.+. +++++.+|.|+++.|.+|..
T Consensus 378 ~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt 413 (985)
T TIGR01372 378 EGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVV 413 (985)
T ss_pred ecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchh
Confidence 65432 23333 34679999999999998865
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0091 Score=60.06 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=38.8
Q ss_pred ceEEEeCceEEEEEcC----CCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 230 KITIEYSCEVERIVDS----EDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 230 gv~i~~~~~v~~i~~~----~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
+++++.++++.+++.. ++....+++.+.+|+++.+|+||-|-|......
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhH
Confidence 5999999999999742 101235778889999999999999999987654
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0056 Score=64.28 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=31.1
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
++++++|||+|+.|+.+|..|. |.+|+++++.+..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4788999999999999999886 9999999987754
|
|
| >KOG2844|consensus | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.01 Score=60.11 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=38.3
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
++.|+.|+.++.|+++....+ +...|++..| .+++..+|-|+|+...
T Consensus 198 ~~~GA~viE~cpV~~i~~~~~--~~~gVeT~~G-~iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 198 SALGALVIENCPVTGLHVETD--KFGGVETPHG-SIETECVVNAAGVWAR 244 (856)
T ss_pred HhcCcEEEecCCcceEEeecC--CccceeccCc-ceecceEEechhHHHH
Confidence 458999999999999986553 2457888888 5999999999999753
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.018 Score=56.27 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=32.6
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISA 170 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~ 170 (454)
.++++|||||..|++.|..|+ |.+|+++++.+.+-.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGG 161 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG 161 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence 579999999999999999997 999999999876654
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.018 Score=57.17 Aligned_cols=49 Identities=20% Similarity=0.149 Sum_probs=38.5
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC---cEEecCEEEEeeccC
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG---HTHACDIVVSAIGVV 274 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g---~~~~~D~vi~a~G~~ 274 (454)
.+.+++.|++++.++++++++.+++ .+++.+.++ +++.+|+||-|-|..
T Consensus 122 ~~~~~~~g~~~~~~~~v~~~~~~~~---~v~v~~~~~~g~~~i~a~lvIgADG~~ 173 (398)
T PRK06996 122 ARAVRGTPVRWLTSTTAHAPAQDAD---GVTLALGTPQGARTLRARIAVQAEGGL 173 (398)
T ss_pred HHHHHhCCCEEEcCCeeeeeeecCC---eEEEEECCCCcceEEeeeEEEECCCCC
Confidence 3445667999999999999977653 467777754 689999999999953
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.018 Score=59.38 Aligned_cols=47 Identities=23% Similarity=0.223 Sum_probs=41.9
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
+++||+++++..+..|.... ..|..++|.++.+|-+++|||..|...
T Consensus 70 ~~~~i~L~~~~~v~~idr~~-----k~V~t~~g~~~~YDkLilATGS~pfi~ 116 (793)
T COG1251 70 EENGITLYTGEKVIQIDRAN-----KVVTTDAGRTVSYDKLIIATGSYPFIL 116 (793)
T ss_pred HHcCcEEEcCCeeEEeccCc-----ceEEccCCcEeecceeEEecCcccccc
Confidence 55899999999999998876 357888899999999999999999876
|
|
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0047 Score=65.86 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=35.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT 43 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~ 43 (454)
.+|+|||||++|+++|..|++. +++|+|+|+.+..++..
T Consensus 185 ~~VvIIGaG~aGL~aA~~L~~~--G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 185 SSVVIVGAGLSGLAAARQLMRF--GFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCEEEECccHHHHHHHHHHHHC--CCcEEEEEccCcCCCCc
Confidence 6899999999999999999998 88999999998876543
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0033 Score=65.65 Aligned_cols=31 Identities=29% Similarity=0.435 Sum_probs=29.3
Q ss_pred EEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 5 YLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 5 vvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
|||||+|.||++||..+++. |.+|+|+|+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~--G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAEL--GYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHc--CCCEEEEEecC
Confidence 69999999999999999998 88999999987
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.015 Score=52.76 Aligned_cols=125 Identities=18% Similarity=0.254 Sum_probs=70.8
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc----cCCc---------------chhhhHHHhhccCCCChhh
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF----LDPG---------------AAEFFQDSINKTNTAKPET 195 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~----~d~~---------------~~~~~~~~l~~~~~~~~~~ 195 (454)
+|+|||+|+-|+-+|..|+ |.+|++++++..+..+. ++.. +.+.+ +.+.+. ...
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~V-e~~~~~----glV 77 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAV-EALRDD----GLV 77 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHH-HHHHhC----Cce
Confidence 6899999999999999997 99999999876444321 1111 11111 111110 000
Q ss_pred hhhhccc-ccCCC----CC---CCCC-CccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC-cEEecC
Q psy1545 196 IFKRMRY-NTGGE----KG---PSLG-PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG-HTHACD 265 (454)
Q Consensus 196 ~~~~~~~-~~~~~----~~---~~l~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g-~~~~~D 265 (454)
......+ .+... .+ +-.+ +.++.. .+. -....+|+++++|+++...++ ..++.+++| ....+|
T Consensus 78 ~~W~~~~~~~~~~~~~~~~d~~pyvg~pgmsal---ak~-LAtdL~V~~~~rVt~v~~~~~---~W~l~~~~g~~~~~~d 150 (331)
T COG3380 78 DVWTPAVWTFTGDGSPPRGDEDPYVGEPGMSAL---AKF-LATDLTVVLETRVTEVARTDN---DWTLHTDDGTRHTQFD 150 (331)
T ss_pred eeccccccccccCCCCCCCCCCccccCcchHHH---HHH-HhccchhhhhhhhhhheecCC---eeEEEecCCCcccccc
Confidence 0110011 11100 00 0111 112211 111 225678899999999987753 789999766 668999
Q ss_pred EEEEeecc
Q psy1545 266 IVVSAIGV 273 (454)
Q Consensus 266 ~vi~a~G~ 273 (454)
.|++++..
T Consensus 151 ~vvla~PA 158 (331)
T COG3380 151 DVVLAIPA 158 (331)
T ss_pred eEEEecCC
Confidence 99999865
|
|
| >COG3573 Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0057 Score=56.80 Aligned_cols=34 Identities=24% Similarity=0.489 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+|++|||+|.||+.||.+|+.. |.+|+++|.+.
T Consensus 5 ~~dvivvgaglaglvaa~elA~a--G~~V~ildQEg 38 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADA--GKRVLILDQEG 38 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhc--CceEEEEcccc
Confidence 47999999999999999999998 99999999874
|
|
| >KOG0399|consensus | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0071 Score=64.48 Aligned_cols=36 Identities=14% Similarity=0.350 Sum_probs=32.8
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISA 170 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~ 170 (454)
+++|.|||+|+.|+.+|..|. |..|++.+|+++.-.
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence 789999999999999999985 999999999998654
|
|
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0054 Score=68.06 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=35.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
.++|+|||||++|+++|..|.+. |.+|+|+|+.+.+++.
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~--G~~V~VlEa~~~vGGr 731 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQ--GFSVTVLEARSRIGGR 731 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHC--CCcEEEEeeccCCCCc
Confidence 36899999999999999999998 8899999998877654
|
|
| >KOG1346|consensus | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.017 Score=55.36 Aligned_cols=99 Identities=14% Similarity=0.136 Sum_probs=64.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcC--CCCeEE-EECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEc-ceEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLH--PGESIG-LVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIV-DTVA 77 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~--~g~~v~-lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~-~~v~ 77 (454)
..|.|||+|+-|...|+.|.+.. .|.+|. +++..... ...+ +..+.+...+.+++ +++++. ..|.
T Consensus 348 ~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm---------~kiL-Peyls~wt~ekir~~GV~V~pna~v~ 417 (659)
T KOG1346|consen 348 QSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNM---------EKIL-PEYLSQWTIEKIRKGGVDVRPNAKVE 417 (659)
T ss_pred ceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCCh---------hhhh-HHHHHHHHHHHHHhcCceeccchhhh
Confidence 46899999999999999998752 244443 23222111 1111 11233333455566 999884 4676
Q ss_pred EEeCc--ccEEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 78 AIDPR--VNCVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 78 ~i~~~--~~~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
++... +..+.+.+|.+++.|.+|+|+|..|+..-
T Consensus 418 sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~el 453 (659)
T KOG1346|consen 418 SVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSEL 453 (659)
T ss_pred hhhhhccceEEEecCCCeeeeeeEEEEecCCCchhh
Confidence 66543 34567889999999999999999987643
|
|
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0048 Score=63.59 Aligned_cols=35 Identities=31% Similarity=0.530 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++|+||||+|.+|..+|.+|.. ++.+|+|+|+.+.
T Consensus 7 ~~D~vIVGsG~aG~~lA~rLs~--~g~~VllLEaG~~ 41 (542)
T COG2303 7 EYDYVIVGSGSAGSVLAARLSD--AGLSVLVLEAGGP 41 (542)
T ss_pred CCCEEEECCCchhHHHHHHhcC--CCCeEEEEeCCCC
Confidence 6899999999999999999995 5999999999864
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0065 Score=65.31 Aligned_cols=33 Identities=21% Similarity=0.135 Sum_probs=30.0
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCC
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDK 166 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~ 166 (454)
.+++|+|||+|+.|+.+|..|+ |.+||++++.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 4789999999999999999997 99999999753
|
|
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0062 Score=62.91 Aligned_cols=34 Identities=32% Similarity=0.462 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
|+||||||.||+.+|.+|++. +..+|+|||+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~-~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSED-VSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccC-CCCeEEEEecCCC
Confidence 799999999999999999997 2479999999974
|
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. |
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.048 Score=55.92 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=38.0
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEe--cCC--cEEecCEEEEeec-cCcCcc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL--TNG--HTHACDIVVSAIG-VVPNSN 278 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~--~~g--~~~~~D~vi~a~G-~~p~~~ 278 (454)
.+.+++.|+++++++.++++..++ +....+.. .++ .++.++.||+|+| +.+|.+
T Consensus 197 ~~~~~~~gv~i~~~t~v~~l~~~~--g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~ 255 (506)
T PRK06481 197 LKNVQERKIPLFVNADVTKITEKD--GKVTGVKVKINGKETKTISSKAVVVTTGGFGANKD 255 (506)
T ss_pred HHHHHHcCCeEEeCCeeEEEEecC--CEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHH
Confidence 444567899999999999998654 23333433 443 3689999999997 666544
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.051 Score=54.76 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=29.2
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
.-.|+|||||+.|+-+|..|+ |.+|.++++...
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 458999999999999998886 999999998753
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.057 Score=54.39 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=35.7
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEe--cCCc--EEecCEEEEeeccC
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL--TNGH--THACDIVVSAIGVV 274 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~--~~g~--~~~~D~vi~a~G~~ 274 (454)
.+.+++.|+++++++.++++..+++ +....+.. .+++ .+.++.||+|+|-.
T Consensus 137 ~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~ 191 (439)
T TIGR01813 137 YKKAKKEGIDTRLNSKVEDLIQDDQ-GTVVGVVVKGKGKGIYIKAAKAVVLATGGF 191 (439)
T ss_pred HHHHHHcCCEEEeCCEeeEeEECCC-CcEEEEEEEeCCCeEEEEecceEEEecCCC
Confidence 4445778999999999999986532 23333444 3443 47899999999843
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.0073 Score=60.01 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=71.6
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc-cCCcchhhhHHHhhccC---------CCChhhhhhhcccc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF-LDPGAAEFFQDSINKTN---------TAKPETIFKRMRYN 203 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~-~d~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~~ 203 (454)
-.|+|||||..|+|+|.+.+ |+++.+++....-...+ .+|.+.......+.+.- ..+...+..++-..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~ 84 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS 84 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence 46899999999999998886 99998887543222110 23332222111111100 00001111111111
Q ss_pred cCCCCCCCCCCccccccc---cccCc-cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccC
Q psy1545 204 TGGEKGPSLGPDWHTQVN---LHGSS-RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVV 274 (454)
Q Consensus 204 ~~~~~~~~l~~~~~~~~~---~~~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~ 274 (454)
..++--...-....+.++ +++.+ ...++.++.+ .|..+...++ .....|.+.+|..+.|+.||++||.-
T Consensus 85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~-~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEG-QRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCC-CeEEEEEeCCCCeeecCEEEEeeccc
Confidence 111111111111222221 22222 4467888776 4555544331 23678899999999999999999974
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.026 Score=57.06 Aligned_cols=80 Identities=11% Similarity=0.133 Sum_probs=52.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEe
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAID 80 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~ 80 (454)
..+++|+|+|..|+++|..|++. |++|+++|+..... + ....+.+.. +++++.+....
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~--G~~V~~~d~~~~~~----------------~-~~~~~~l~~~~~~~~~~~~~~-- 63 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL--GAKVILTDEKEEDQ----------------L-KEALEELGELGIELVLGEYPE-- 63 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchHH----------------H-HHHHHHHHhcCCEEEeCCcch--
Confidence 36799999999999999999998 89999998865210 0 111223333 55554332211
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCCCCCCC
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASPRKIWY 112 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~ 112 (454)
...-.+|.+|.++|..+..|.+
T Consensus 64 ----------~~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 64 ----------EFLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred ----------hHhhcCCEEEECCCCCCCCHHH
Confidence 0112489999999987766644
|
|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.054 Score=55.01 Aligned_cols=49 Identities=18% Similarity=0.138 Sum_probs=35.5
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEec--CC--cEEecCEEEEeecc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT--NG--HTHACDIVVSAIGV 273 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~--~g--~~~~~D~vi~a~G~ 273 (454)
.+..++.|+++++++.++++..++ ++...+... ++ ..+.++.||+|+|-
T Consensus 138 ~~~~~~~gv~i~~~t~v~~l~~~~--g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 138 YRSAERLGVEIRYDAPVTALELDD--GRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HHHHHHCCCEEEcCCEEEEEEecC--CeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 344567899999999999988644 334445442 33 46889999999985
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.077 Score=55.94 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=30.1
Q ss_pred CCeEEEEcCchhHHHHHHHhc---CCcEEEEEeCCCcc
Q psy1545 135 AKKIVVIGNGGIATELVHELS---NVDIVWVVKDKHIS 169 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~---g~~V~~i~~~~~~~ 169 (454)
.-+|+|||||+.|+-+|..|+ |.+|+++++.+...
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~ 69 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRL 69 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCC
Confidence 458999999999999999885 78999999887543
|
|
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.011 Score=61.38 Aligned_cols=34 Identities=29% Similarity=0.616 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.||+||||||.||+.+|.+|.+ ..+|+|||+++.
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~---~~~VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ---NFSVLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc---CCcEEEEecCCC
Confidence 4899999999999999999998 479999999864
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.11 Score=53.24 Aligned_cols=48 Identities=19% Similarity=0.091 Sum_probs=36.3
Q ss_pred ccCCceEEEeCceEEEEEcCCCCccceEEEecC---C--cEEecCEEEEeeccCcC
Q psy1545 226 SRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN---G--HTHACDIVVSAIGVVPN 276 (454)
Q Consensus 226 l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~---g--~~~~~D~vi~a~G~~p~ 276 (454)
.++.|++++.+++|+++..+++ .+.+.+.+ | .++.++.||.|+|....
T Consensus 165 A~~~Ga~i~~~~~V~~i~~~~~---~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 165 AAERGAEILTRTRVVSARRENG---LWHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHcCCEEEcCcEEEEEEEeCC---EEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 4667999999999999976542 34555543 4 36899999999998653
|
|
| >COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.026 Score=52.53 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=31.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+..|-|||||.||..||+.++++ |.+|.|+|-.+.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~--Gv~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKR--GVPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHc--CCcEEEEEcccc
Confidence 56799999999999999999999 999999997754
|
|
| >KOG2852|consensus | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.03 Score=51.21 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcC----CCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLH----PGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~----~g~~v~lie~~~ 37 (454)
.+|+|+|||..|..+|+.|.+.. ....|+|+|+..
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~ 49 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKE 49 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecc
Confidence 57999999999999999999872 126899999874
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.068 Score=53.91 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=35.9
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
+..++.||+++.++ |..+..+.+ +....|.+++|.++++|++|=|+|++..
T Consensus 162 ~~A~~~Gv~~~~g~-V~~v~~~~~-g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 162 RHAEERGVEVIEGT-VVDVELDED-GRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHTT-EEEET--EEEEEE-TT-SEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHhcCCCEEEeCE-EEEEEEcCC-CCEEEEEECCCCEEEEeEEEECCCccch
Confidence 33366799999985 666655443 4466899999999999999999999764
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >KOG0042|consensus | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.0053 Score=60.63 Aligned_cols=41 Identities=34% Similarity=0.562 Sum_probs=36.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK 44 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~ 44 (454)
.+||+|||||..|..||.-.+.+ |+++.|+|++++..+...
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TR--GLktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATR--GLKTALVEAGDFASGTSS 107 (680)
T ss_pred cccEEEECCCccCcceeehhhcc--cceeEEEecccccCCccc
Confidence 38999999999999999999998 999999999998765443
|
|
| >KOG1238|consensus | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.013 Score=59.51 Aligned_cols=37 Identities=30% Similarity=0.515 Sum_probs=34.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
.||.||||||.||...|.+|.+. |..+|.|+|++...
T Consensus 57 ~yDyIVVGgGtAGcvlAarLSEn-~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 57 SYDYIVVGGGTAGCVLAARLSEN-PNWSVLLLEAGGDP 93 (623)
T ss_pred CCCEEEECCCchhHHHHHhhccC-CCceEEEEecCCCC
Confidence 48999999999999999999996 78999999998765
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.086 Score=54.07 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=29.3
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
..+++|||+|..|+-+|..|+ |.+|++++|.+.
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 457999999999999999986 999999998753
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.069 Score=53.35 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=36.2
Q ss_pred cccCccCCceEEEeCceEEEEEcCCCCccceEEEec---CC--cEEecCEEEEeeccCcC
Q psy1545 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---NG--HTHACDIVVSAIGVVPN 276 (454)
Q Consensus 222 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g--~~~~~D~vi~a~G~~p~ 276 (454)
+.+.+++.|+++++++.++++..++ +++..+... +| .++.++.||+|||--..
T Consensus 147 l~~~~~~~gv~i~~~~~~~~Li~e~--g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 147 LAKAAEEAGVDIRFNTRVTDLITED--GRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHTTEEEEESEEEEEEEEET--TEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHhhcCeeeeccceeeeEEEeC--CceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 3455577899999999999998765 345556555 45 35789999999987654
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.025 Score=40.40 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=26.7
Q ss_pred EEcCchhHHHHHHHhc--CCcEEEEEeCCCccc
Q psy1545 140 VIGNGGIATELVHELS--NVDIVWVVKDKHISA 170 (454)
Q Consensus 140 VvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~ 170 (454)
|||+|.+|+-+|..|. +.+|+++++.+.+-.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence 7999999999999997 899999999887643
|
... |
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.12 Score=51.79 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=27.6
Q ss_pred CeEEEEcCchhHHHHHHHhc-CCcEEEEEeCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS-NVDIVWVVKDKH 167 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~-g~~V~~i~~~~~ 167 (454)
-.|+|||+|..|+-+|..+. |.+|.++++.+.
T Consensus 5 ~DVvVVG~G~AGl~AA~~a~~G~~V~lleK~~~ 37 (433)
T PRK06175 5 ADVLIVGSGVAGLYSALNLRKDLKILMVSKGKL 37 (433)
T ss_pred ccEEEECchHHHHHHHHHhccCCCEEEEecCCC
Confidence 36999999999999998776 999999998654
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.11 Score=46.02 Aligned_cols=137 Identities=15% Similarity=0.168 Sum_probs=64.5
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (454)
...++|||+|++|+-+|..|+ |.+|.+++++..+-....... ..+.+..-+ .+......+..+...+.-..-.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg--~lf~~iVVq---~~a~~iL~elgi~y~~~~~g~~ 91 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGG--MLFNKIVVQ---EEADEILDELGIPYEEYGDGYY 91 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-C--TT---EEEE---TTTHHHHHHHT---EE-SSEEE
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccc--cccchhhhh---hhHHHHHHhCCceeEEeCCeEE
Confidence 467999999999999999997 999999998764432211110 000000000 0111112222222211000000
Q ss_pred CCcccc-ccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec------CC-----cEEecCEEEEeeccCcCc
Q psy1545 213 GPDWHT-QVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT------NG-----HTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 213 ~~~~~~-~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~------~g-----~~~~~D~vi~a~G~~p~~ 277 (454)
-.+-.. ...+....-+.|++++..+.++.+--.++ .+...+..+ .| -.+++..||-|||.....
T Consensus 92 v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 92 VADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp ES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred EEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence 000000 00011222348999999999988764432 233344432 12 478999999999998754
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.016 Score=58.17 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=28.1
Q ss_pred EECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 7 IIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 7 IIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
|||+|.+|++||.++++. |.+|+|+|+.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~--Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRA--GASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhC--CCcEEEEeCCCC
Confidence 799999999999999998 899999999874
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.096 Score=53.71 Aligned_cols=47 Identities=15% Similarity=0.015 Sum_probs=36.3
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCC----cEEecCEEEEeeccCcC
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG----HTHACDIVVSAIGVVPN 276 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g----~~~~~D~vi~a~G~~p~ 276 (454)
++.|++++.++.|.++..+++ .+.+.+.++ .++.++.||.|+|....
T Consensus 166 ~~~Ga~i~~~~~V~~i~~~~~---~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 166 AERGATILTRTRCVSARREGG---LWRVETRDADGETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHCCCEEecCcEEEEEEEcCC---EEEEEEEeCCCCEEEEEecEEEECCCccHH
Confidence 568999999999999887652 355665554 35899999999997653
|
|
| >KOG0404|consensus | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.1 Score=46.03 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=33.0
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
.+.|.++++. .|.++..... -+.+.. +.+.+.+|.||+|||.....
T Consensus 81 ~r~Gt~i~tE-tVskv~~ssk---pF~l~t-d~~~v~~~avI~atGAsAkR 126 (322)
T KOG0404|consen 81 ERFGTEIITE-TVSKVDLSSK---PFKLWT-DARPVTADAVILATGASAKR 126 (322)
T ss_pred Hhhcceeeee-ehhhccccCC---CeEEEe-cCCceeeeeEEEecccceee
Confidence 4578888887 5677766542 455554 44579999999999987643
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.34 Score=49.20 Aligned_cols=49 Identities=18% Similarity=0.108 Sum_probs=34.1
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
+.+++.||+++.+ .+..+..++ +....+.. ++..+.++.||+|||-...
T Consensus 128 ~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~-~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 128 KHARELGVNFIRG-FAEELAIKN--GKAYGVFL-DGELLKFDATVIATGGFSG 176 (466)
T ss_pred HHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence 4446689999876 677776433 22344444 5667999999999998664
|
|
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.16 Score=51.67 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=38.9
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEE---ecCCc--EEecCEEEEeeccCcCcccccCCCCc
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVK---LTNGH--THACDIVVSAIGVVPNSNIQVHGTPF 286 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~---~~~g~--~~~~D~vi~a~G~~p~~~~~~~~~~l 286 (454)
+..|+++++++.|..++..++ ..+.+. ..++. ++.+|.||+|+|..... +++..|+
T Consensus 196 ~~~Gv~i~~~~~V~~I~~~~d--~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~--La~~~Gi 256 (497)
T PRK13339 196 SHPNAQVKYNHEVVDLERLSD--GGWEVTVKDRNTGEKREQVADYVFIGAGGGAIP--LLQKSGI 256 (497)
T ss_pred hCCCcEEEeCCEEEEEEECCC--CCEEEEEEecCCCceEEEEcCEEEECCCcchHH--HHHHcCC
Confidence 345899999999999986522 134454 23442 68999999999998754 5555544
|
|
| >KOG2755|consensus | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.013 Score=52.67 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=23.5
Q ss_pred eEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 252 AYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 252 ~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
..+++.+|..+.++.+++|+|++|..
T Consensus 81 hci~t~~g~~~ky~kKOG~tg~kPkl 106 (334)
T KOG2755|consen 81 HCIHTQNGEKLKYFKLCLCTGYKPKL 106 (334)
T ss_pred ceEEecCCceeeEEEEEEecCCCcce
Confidence 46888999999999999999999975
|
|
| >KOG2614|consensus | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.17 Score=48.93 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=29.8
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS 169 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~ 169 (454)
.+|+|||||..|+-.|..|. |.+|.+++.++.+.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR 38 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence 58999999999999999997 99999999865443
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.17 Score=50.07 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=28.7
Q ss_pred CeEEEEcCchhHHHHHHHhc-----CCcEEEEEeCCCccc
Q psy1545 136 KKIVVIGNGGIATELVHELS-----NVDIVWVVKDKHISA 170 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~-----g~~V~~i~~~~~~~~ 170 (454)
.+|+|||+|++|+.+|..|. ...++++++.+++-.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~ 41 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQ 41 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCC
Confidence 57999999999999999885 223999998876653
|
|
| >KOG3851|consensus | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.04 Score=51.11 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=30.9
Q ss_pred ceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 237 CEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 237 ~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
..|++++++++ +|.+.+|+++.+|++|+|+|..-+.+
T Consensus 112 ekv~~f~P~~N-----~v~t~gg~eIsYdylviA~Giql~y~ 148 (446)
T KOG3851|consen 112 EKVKEFNPDKN-----TVVTRGGEEISYDYLVIAMGIQLDYG 148 (446)
T ss_pred HHHHhcCCCcC-----eEEccCCcEEeeeeEeeeeeceeccc
Confidence 46777877763 68899999999999999999987765
|
|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.22 Score=51.61 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=28.0
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
-.|+|||+|..|+-+|..++ |.+|.++++...
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~ 50 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence 57999999999999998876 899999998654
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.056 Score=45.95 Aligned_cols=32 Identities=25% Similarity=0.228 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
+|.|||||..|.++|..|++. +++|+|+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~--g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN--GHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC--TEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCEEEEEeccH
Confidence 589999999999999999998 89999999875
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >KOG4254|consensus | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.028 Score=54.53 Aligned_cols=49 Identities=20% Similarity=0.172 Sum_probs=39.9
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~ 273 (454)
.+.+++.|-+|.++..|.+|.-++ +..+.|.+.||+++.+..|+.-++.
T Consensus 271 a~~~~~~GaeI~tka~Vq~Illd~--gka~GV~L~dG~ev~sk~VvSNAt~ 319 (561)
T KOG4254|consen 271 AEGAKRAGAEIFTKATVQSILLDS--GKAVGVRLADGTEVRSKIVVSNATP 319 (561)
T ss_pred HHHHHhccceeeehhhhhheeccC--CeEEEEEecCCcEEEeeeeecCCch
Confidence 455578999999999999998776 5688999999999998776655444
|
|
| >KOG3855|consensus | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.061 Score=51.73 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcC--CCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLH--PGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~--~g~~v~lie~~~~ 38 (454)
++||||+||||+|++.|..|.... ...++.|+|..+.
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 489999999999999999998542 1568999998843
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.35 Score=50.42 Aligned_cols=49 Identities=12% Similarity=0.011 Sum_probs=34.7
Q ss_pred CccCCceEEEeCceEEEEEcCCCCccceEEEe---cCCc--EEecCEEEEeeccCc
Q psy1545 225 SSRDTKITIEYSCEVERIVDSEDDTCNAYVKL---TNGH--THACDIVVSAIGVVP 275 (454)
Q Consensus 225 ~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~---~~g~--~~~~D~vi~a~G~~p 275 (454)
.+++.||+++.++.++++..++ +....+.. .+|+ .+.++.||+|+|-..
T Consensus 138 ~~~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 138 QCLKLGVSFFNEYFALDLIHDD--GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHcCCEEEeccEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 3455699999999999987643 23333332 3563 589999999999644
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.05 Score=42.55 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=29.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+++|||||..|..-+..|.+. |.+|+++.++.
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~--gA~v~vis~~~ 40 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEA--GAKVTVISPEI 40 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCC--TBEEEEEESSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCch
Confidence 5799999999999999999998 89999998874
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.14 Score=49.26 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++|.|||.|..|++.|..|++. |++|+.+|..+.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~--GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL--GHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc--CCeEEEEeCCHH
Confidence 4799999999999999999999 999999998764
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.06 Score=55.79 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+||||||+|.||++||..+ +. |.+|+|+|+.+.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~--G~~VilleK~~~ 40 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ER--GKNVVIVSKGLF 40 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hc--CCCEEEEEccCC
Confidence 47999999999999999999 76 889999999764
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.45 Score=50.24 Aligned_cols=48 Identities=19% Similarity=0.148 Sum_probs=34.9
Q ss_pred ccCCceEEEeCceEEEEEcCCCCccceEEEec---CC--cEEecCEEEEeeccCc
Q psy1545 226 SRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---NG--HTHACDIVVSAIGVVP 275 (454)
Q Consensus 226 l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g--~~~~~D~vi~a~G~~p 275 (454)
+++.||++++++.++++..++ +.+..+... +| ..+.++.||+|||--.
T Consensus 180 ~~~~gV~i~~~t~v~~Li~d~--g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 180 IAAGTVKMYTRTEMLDLVVVD--GRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHhcCCEEEeceEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 456799999999999987543 334445443 45 3689999999998743
|
|
| >KOG3923|consensus | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.074 Score=48.92 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=32.6
Q ss_pred cccEEEECCCHHHHHHHHHHhh-----cCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAF-----LHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~-----~~~g~~v~lie~~~~~~ 40 (454)
.++|+|||+|..|++.|..+.+ ..|..+|++++......
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~ 46 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTED 46 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccc
Confidence 5799999999999999988877 45678999998876543
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.14 Score=53.02 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=28.4
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDK 166 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~ 166 (454)
-+|+|||||+.|+-+|..|+ |.+|++++|.+
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 47999999999999999996 99999999875
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.071 Score=52.55 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=30.3
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS 169 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~ 169 (454)
++|+|||||..|+++|..|+ |.+|+++++++...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 58999999999999999996 99999999876653
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.4 Score=49.02 Aligned_cols=51 Identities=20% Similarity=0.040 Sum_probs=35.7
Q ss_pred cCccC-CceEEEeCceEEEEEcCCCCccceEEEecC-C--cEEecCEEEEeeccCcC
Q psy1545 224 GSSRD-TKITIEYSCEVERIVDSEDDTCNAYVKLTN-G--HTHACDIVVSAIGVVPN 276 (454)
Q Consensus 224 ~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~-g--~~~~~D~vi~a~G~~p~ 276 (454)
+.+++ .||+++.++.++++..++ +....+...+ + ..+.++.||+|+|-...
T Consensus 136 ~~~~~~~gi~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 136 KKALNHPNIRIIEGENALDLLIET--GRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHhcCCcEEEECeEeeeeeccC--CEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 33344 699999999999987644 2233344433 3 46899999999998654
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.44 Score=48.77 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=35.9
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEec-CC--cEEec-CEEEEeeccCc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT-NG--HTHAC-DIVVSAIGVVP 275 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~-~g--~~~~~-D~vi~a~G~~p 275 (454)
.+..++.|+++++++.++++..+++ ++...|... ++ ..+.+ +.||+|+|--.
T Consensus 184 ~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 184 AKRAAALGVQIRYDTRATRLIVDDD-GRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred HHHHHhCCCEEEeCCEEEEEEECCC-CCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 3445678999999999999876432 234445443 33 35778 99999998543
|
|
| >KOG2852|consensus | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.26 Score=45.33 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=27.0
Q ss_pred CCeEEEEcCchhHHHHHHHhc--C------CcEEEEEeCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--N------VDIVWVVKDK 166 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g------~~V~~i~~~~ 166 (454)
.++++|+|||.+|+..|..|. + ..+|+++.+.
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~ 49 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKE 49 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecc
Confidence 589999999999999999996 2 5789998643
|
|
| >KOG2311|consensus | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.13 Score=50.45 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=25.9
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKD 165 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~ 165 (454)
-.|+|||||..|+|.|.+.+ |++.+++..+
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 37999999999999998876 9999888753
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.076 Score=55.36 Aligned_cols=56 Identities=18% Similarity=0.149 Sum_probs=38.5
Q ss_pred CCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 290 PDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 290 ~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
..|+|.+|...||++||+||+|+|+.......+... -.....+.-.|+.|+.+++.
T Consensus 376 t~GGi~vD~~~~t~IpGLyAaGE~a~~G~hGanrl~-gnsl~e~lvfGr~Ag~~aa~ 431 (594)
T PLN02815 376 MCGGVRTGLQGETNVQGLYAAGEVACTGLHGANRLA-SNSLLEALVFARRAVQPSID 431 (594)
T ss_pred eCCCeeECCCCceecCCEEecccccccCCCCCCcch-hhHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999853333322100 01234466678888887764
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.079 Score=49.77 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=70.3
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (454)
+-.++|||||+.|...|...+ |.+.-++. ++|-.+.+|..--+ +.......-
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT~~IE------------------------NfIsv~~te 264 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTMGIE------------------------NFISVPETE 264 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccccchh------------------------heecccccc
Confidence 568999999999988886654 65554442 12211111111100 001122222
Q ss_pred CCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 213 GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 213 ~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
+|.+... +.+..++..|.++...+.+++++.+..+....|++.+|..+++..+|++||.+-
T Consensus 265 Gpkl~~a--le~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW 325 (520)
T COG3634 265 GPKLAAA--LEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARW 325 (520)
T ss_pred chHHHHH--HHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcch
Confidence 3333332 233446688999888888888875433457899999999999999999999864
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.074 Score=55.71 Aligned_cols=56 Identities=20% Similarity=0.087 Sum_probs=37.8
Q ss_pred cCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 289 APDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 289 ~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
...|+|.+|...+|++|++||+|+|++. ..+++... -.....+.-.|+.||++++.
T Consensus 368 ~~~gG~~~d~~~~t~i~gL~a~Ge~~~~-~hg~nrl~-~~sl~~~~v~g~~Ag~~aa~ 423 (603)
T TIGR01811 368 YTMGGLWVDYDQMTNIPGLFAAGECDFS-QHGANRLG-ANSLLSAIADGYFALPFTIP 423 (603)
T ss_pred eeCCCeeECCCCcccCCCEEECcccccC-cCCCccch-hHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999753 23222100 01123466677888877654
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.08 Score=47.92 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++++|||+|..|.+.|..|.+. |++|++||+.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~--g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE--GHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC--CCceEEEEcCHH
Confidence 3799999999999999999998 999999999764
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.064 Score=56.73 Aligned_cols=57 Identities=12% Similarity=0.108 Sum_probs=38.1
Q ss_pred cCCCceEecccccc-ccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 289 APDCGIGVNELMQT-SISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 289 ~~~g~i~vd~~~~t-~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
...|+|.||...|| ++|++||+|+|+.......+.... .....+.-.|+.|+++++.
T Consensus 370 ytmGGi~vd~~~~t~~I~GLyAaGE~a~~g~hGanrlgg-nsl~~~~v~G~iAg~~aa~ 427 (657)
T PRK08626 370 YSMGGIRTNPTGESYGLKGLFSAGEAACWDMHGFNRLGG-NSLAETVVAGMIVGKYVAD 427 (657)
T ss_pred EecCCceECCCCCCcccCCEEecccccccCCCCCCccch-HHHHHHHHHHHHHHHHHHH
Confidence 34689999999999 599999999998643333221000 1123466678888877764
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.11 Score=46.16 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+++|||||..|...+..|.+. |.+|+|++++.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA--GAQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCC
Confidence 5799999999999999999998 89999998864
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 454 | ||||
| 2gr3_A | 408 | Crystal Structure Of Ferredoxin Reductase, Bpha4 (O | 9e-10 | ||
| 1d7y_A | 408 | Crystal Structure Of Nadh-Dependent Ferredoxin Redu | 2e-09 | ||
| 3fg2_P | 404 | Crystal Structure Of Ferredoxin Reductase For The C | 1e-07 | ||
| 1joa_A | 447 | Nadh Peroxidase With Cysteine-Sulfenic Acid Length | 2e-07 | ||
| 1nhq_A | 447 | Crystallographic Analyses Of Nadh Peroxidase Cys42a | 2e-07 | ||
| 1nhp_A | 447 | Crystallographic Analyses Of Nadh Peroxidase Cys42a | 2e-07 | ||
| 1nhs_A | 447 | An L40c Mutation Converts The Cysteine-Sulfenic Aci | 2e-07 | ||
| 1nhr_A | 447 | An L40c Mutation Converts The Cysteine-Sulfenic Aci | 2e-07 | ||
| 1f8w_A | 447 | Crystal Structure Of Nadh Peroxidase Mutant: R303m | 5e-07 | ||
| 1q1r_A | 431 | Crystal Structure Of Putidaredoxin Reductase From P | 2e-06 | ||
| 3lb8_A | 436 | Crystal Structure Of The Covalent Putidaredoxin Red | 3e-06 | ||
| 3lxd_A | 415 | Crystal Structure Of Ferredoxin Reductase Arr From | 2e-05 | ||
| 3kd9_A | 449 | Crystal Structure Of Pyridine Nucleotide Disulfide | 3e-05 | ||
| 3ntd_A | 565 | Structure Of The Shewanella Loihica Pv-4 Nadh-Depen | 3e-05 | ||
| 2wba_A | 492 | Properties Of Trypanothione Reductase From T. Bruce | 5e-05 | ||
| 1mo9_A | 523 | Nadph Dependent 2-Ketopropyl Coenzyme M Oxidoreduct | 6e-05 | ||
| 2woi_A | 495 | Trypanothione Reductase From Trypanosoma Brucei Len | 6e-05 | ||
| 3cgc_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 7e-05 | ||
| 2v3a_A | 384 | Crystal Structure Of Rubredoxin Reductase From Pseu | 1e-04 | ||
| 4em3_A | 437 | Crystal Structure Of Staphylococcus Aureus Bound Wi | 2e-04 | ||
| 4emw_A | 436 | Crystal Structure Of Staphylococcus Aureus Bound Wi | 2e-04 | ||
| 4eqx_A | 437 | Crystal Structure Of The C43s Mutant Of Staphylococ | 2e-04 | ||
| 1yqz_A | 438 | Structure Of Coenzyme A-Disulfide Reductase From St | 2e-04 | ||
| 4eqw_A | 437 | Crystal Structure Of The Y361f, Y419f Mutant Of Sta | 2e-04 | ||
| 4eqs_A | 437 | Crystal Structure Of The Y419f Mutant Of Staphyloco | 2e-04 | ||
| 4eqr_A | 437 | Crystal Structure Of The Y361f Mutant Of Staphyloco | 2e-04 | ||
| 3cgb_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 6e-04 |
| >pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized Form) Length = 408 | Back alignment and structure |
|
| >pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase, Bpha4 Length = 408 | Back alignment and structure |
|
| >pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2 System From Rhodopseudomonas Palustris Length = 404 | Back alignment and structure |
|
| >pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447 | Back alignment and structure |
|
| >pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447 | Back alignment and structure |
|
| >pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447 | Back alignment and structure |
|
| >pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447 | Back alignment and structure |
|
| >pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447 | Back alignment and structure |
|
| >pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m Length = 447 | Back alignment and structure |
|
| >pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431 | Back alignment and structure |
|
| >pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436 | Back alignment and structure |
|
| >pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415 | Back alignment and structure |
|
| >pdb|3KD9|A Chain A, Crystal Structure Of Pyridine Nucleotide Disulfide Oxidoreductase From Pyrococcus Horikoshii Length = 449 | Back alignment and structure |
|
| >pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C531s Mutant Length = 565 | Back alignment and structure |
|
| >pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492 | Back alignment and structure |
|
| >pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl Coenzyme M Length = 523 | Back alignment and structure |
|
| >pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495 | Back alignment and structure |
|
| >pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas Aeruginosa. Length = 384 | Back alignment and structure |
|
| >pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Mevs-Coa Length = 437 | Back alignment and structure |
|
| >pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Etvc-Coa Length = 436 | Back alignment and structure |
|
| >pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From Staphylococcus Aureus Refined At 1.54 Angstrom Resolution Length = 438 | Back alignment and structure |
|
| >pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 5e-44
Identities = 76/459 (16%), Positives = 155/459 (33%), Gaps = 114/459 (24%)
Query: 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVT--PSGIVKAVTKTVPVTKLLS-DITVEET 60
LI+G G AG S + L + I ++ + + ++++ + ++++
Sbjct: 11 KILILGAGPAGFSAAKAA--LGKCDDITMINSEKYL---PYYR-PRLNEIIAKNKSIDDI 64
Query: 61 DANKFE-----GLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRK--IWYS 113
K + + + + +IDP V + +IKY+ L I +G+ K + ++
Sbjct: 65 LIKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHA 124
Query: 114 PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSN--VDIVWVVKDKHISAT 171
+ ++ D ++++ K+ K +IG G + EL + + + ++
Sbjct: 125 DEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLER 184
Query: 172 FLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKI 231
LD F +D +++ G I
Sbjct: 185 QLDRDGGLFLKDKLDR-----------------------------------LG------I 203
Query: 232 TIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPD 291
I + E + G V++A+GV PN + D
Sbjct: 204 KIYTNSNFEEM----------------GDLIRSSCVITAVGVKPNL---------DFIKD 238
Query: 292 CGIG------VNELMQTSISNVYAAGDVCTPSWDLAKQWFQMR--LWTQAKHMGTYAAKC 343
I VN+ M+TSI ++YA GDV +++ L A G A
Sbjct: 239 TEIASKRGILVNDHMETSIKDIYACGDVA--------EFYGKNPGLINIANKQGEVAGLN 290
Query: 344 MVGAVKNEPVIQDFSFEMFTHMT--KFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYI 401
G +D S+ K G +I G ++ + YI
Sbjct: 291 ACG--------EDASYSEIIPSPILKVSGISIISCGDIENNK---PSKVFRSTQEDK-YI 338
Query: 402 KLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIAD 440
++K+ ++ A +IG+ + + I + +I+
Sbjct: 339 VCMLKENKIDAAAVIGDVSLGTKLKKAIDSSKSFDNISS 377
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 8e-38
Identities = 74/439 (16%), Positives = 145/439 (33%), Gaps = 105/439 (23%)
Query: 7 IIGGGIAGVSCVEGLAFLHPGESIGLVT--PSGIVKAVTKTVPVTKLLS-DITVEE---T 60
IIG G+AG + L + ++T + +K ++ S + +
Sbjct: 9 IIGTGLAGYNLAREWRKLDGETPLLMITADDGR---SYSK-PMLSTGFSKNKDADGLAMA 64
Query: 61 DANKFEGLCTVIV---DTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKI----WYS 113
+ + V IDP + ++ ++Y+ L + GA P ++
Sbjct: 65 EPGAMAEQLNARILTHTRVTGIDPGHQRIWIGEE-EVRYRDLVLAWGAEPIRVPVEGDAQ 123
Query: 114 PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDI-VWVV-KDKHISAT 171
+ I D + A ++ ++++++G G I E ++LS+ + VV + +
Sbjct: 124 DALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPG 183
Query: 172 FLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKI 231
L P AA+ Q + LG +H
Sbjct: 184 LLHPAAAKAVQAGLE------------------------GLGVRFHLGPV---------- 209
Query: 232 TIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPD 291
+ + + + L++G CD+VVSA+G+ P + ELA
Sbjct: 210 -------LASLKKAGEGLE---AHLSDGEVIPCDLVVSAVGLRPRT---------ELAFA 250
Query: 292 C------GIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMR--LWTQAKHMGTYAAKC 343
GI V+ ++TS +N+YA GD + + A+
Sbjct: 251 AGLAVNRGIVVDRSLRTSHANIYALGDCA--------EVDGLNLLYVMPLMACARALAQT 302
Query: 344 MVGAVKNEPVIQDFSF-EMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIK 402
+ G ++ M K +++ G + V +K
Sbjct: 303 LAGNPS------QVAYGPMPV-TVKTPACPLVVSPPPRGMDGQ------WLVEGSGTDLK 349
Query: 403 LVMKD--GRMQGAVLIGET 419
++ +D GR+ G L G
Sbjct: 350 VLCRDTAGRVIGYALTGAA 368
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 4e-35
Identities = 81/451 (17%), Positives = 153/451 (33%), Gaps = 121/451 (26%)
Query: 5 YLIIGGGIAGVSCVEGLAFLHP----GES-------IGLVTPSGIVKAVTKTVPVTKLLS 53
+I+G G G + L+ + + L I + +
Sbjct: 11 VVIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSKPML--SHYIAGFIP--------RN 60
Query: 54 DITVEETDANKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRK--IW 111
+ D + G+ + + ID VITEK + Y TL + TGA R+ I
Sbjct: 61 RLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEK-GEVPYDTLVLATGARAREPQIK 119
Query: 112 YSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDI-VWVVKDKHISA 170
+++T+R ++E ++++ + ++IG G I EL L+ V ++ H A
Sbjct: 120 GKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLI---HRGA 176
Query: 171 TF--LDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRD 228
F LD + +D + E G
Sbjct: 177 MFLGLDEELSNMIKDMLE--------------------ETG------------------- 197
Query: 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFEL 288
+ + E+ + LTN + + AIG+VPN +L
Sbjct: 198 --VKFFLNSELLEANEE--------GVLTNSGFIEGKVKICAIGIVPNV---------DL 238
Query: 289 APDC------GIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMR--LWTQAKHMGTYA 340
A GI +++ +TS +VYA GD ++ + A
Sbjct: 239 ARRSGIHTGRGILIDDNFRTSAKDVYAIGDCA--------EYSGIIAGTAKAAMEQARVL 290
Query: 341 AKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEY 400
A + G + ++F+ + + KF ++ ++G G+ E+
Sbjct: 291 ADILKGEPR------RYNFKFRSTVFKFGKLQIAIIGNTKGEGKWI-----------EDN 333
Query: 401 IKLVMKDGRMQGAVLIGETEIEEMCENLILN 431
K+ ++G++ GAV+ + E IL+
Sbjct: 334 TKVFYENGKIIGAVVFNDIRKATKLEKEILD 364
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 3e-31
Identities = 65/400 (16%), Positives = 114/400 (28%), Gaps = 112/400 (28%)
Query: 2 EFTYLIIGGGIAGVSCVEGL---------------------------AFLHPGESIGLVT 34
+L+IGGG A + + + T
Sbjct: 11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKT 70
Query: 35 PSGIVKAVTKTVPVTKLLSDITVEETDANKFEGLCTVIVDT-VAAIDPRVNCVITEKQNR 93
+ + S + + G V+ V +D R N V ++
Sbjct: 71 LRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQ 130
Query: 94 IKYKTLCICTGASPRKIWYSP--------HVITIRDTDSVAVLQEKLKSAKKIVVIGNGG 145
I Y+ I TG +PR + R L++ + K I +IG G
Sbjct: 131 ITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGF 190
Query: 146 IATELVHELS------NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKR 199
+ +EL L +++ + +K L + + +
Sbjct: 191 LGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTME---------------- 234
Query: 200 MRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG 259
+ G + + + V+ + + +KL +G
Sbjct: 235 ----------------KVRR---EG------VKVMPNAIVQSV---GVSSGKLLIKLKDG 266
Query: 260 HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDC---------GIGVNELMQTSISNVYAA 310
D +V+A+G+ PN ELA G VN +Q SN++ A
Sbjct: 267 RKVETDHIVAAVGLEPNV---------ELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVA 316
Query: 311 GDVCT-PSWDLAKQWFQMRL--WTQAKHMGTYAAKCMVGA 347
GD L + R+ A G A + M GA
Sbjct: 317 GDAACFYDIKLG----RRRVEHHDHAVVSGRLAGENMTGA 352
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 5e-31
Identities = 74/377 (19%), Positives = 119/377 (31%), Gaps = 96/377 (25%)
Query: 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVT-----P------SGIVKAVTKTVPVTKLL 52
+I+G G+AGV GL +I LV P S KA L
Sbjct: 6 NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLS---KAY--------LA 54
Query: 53 SDITVEET---DANKFEGL-CTVIVDT-VAAIDPRVNCVITEKQNRIKYKTLCICTGASP 107
T E + + ++ T V AI+ VI + Y L + TG P
Sbjct: 55 GKATAESLYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRP 114
Query: 108 RKI-------WYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVD 158
R + + + +R + ++ +L + ++VVIG G I E+ N+
Sbjct: 115 RPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMH 174
Query: 159 IVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHT 218
+ + + P + F++ H
Sbjct: 175 VTLLDTAARVLERVTAPPVSAFYEH--------------------------------LHR 202
Query: 219 QVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278
+ G + I +V S D V +G D+V++ IG++PN
Sbjct: 203 E---AG------VDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNC- 252
Query: 279 IQVHGTPFELAPDC------GIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRL--W 330
ELA GI +NE MQTS + A GD + +R+
Sbjct: 253 --------ELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCA--RFHSQLYDRWVRIESV 302
Query: 331 TQAKHMGTYAAKCMVGA 347
A A + G
Sbjct: 303 PNALEQARKIAAILCGK 319
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 4e-30
Identities = 81/374 (21%), Positives = 126/374 (33%), Gaps = 96/374 (25%)
Query: 4 TYLIIGGGIAGVSCVEGL-AFLHPGESIGLVT-----P------SGIVKAVTKTVPVTKL 51
T LI G G AG L +PG I L+ P S KA L
Sbjct: 3 TVLIAGAGHAGFQVAVSLRQAKYPGR-IALINDEKHLPYQRPPLS---KAY--------L 50
Query: 52 LSDITVEET---DANKFEGLC-TVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASP 107
S F+ +I D + +ID ++ I+Y L + TGA
Sbjct: 51 KSGGDPNSLMFRPEKFFQDQAIELISDRMVSIDREGRKLLLASGTAIEYGHLVLATGARN 110
Query: 108 RKIWYS----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVW 161
R + P V+ +R D VL++++ K +VVIG G I E +++
Sbjct: 111 RMLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDV 170
Query: 162 VVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVN 221
V + A + P + +F D H+
Sbjct: 171 VELAPRVMARVVTPEISSYFHD--------------------------------RHSG-- 196
Query: 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQV 281
G I + Y I + V L++G+T CD+VV +GV+PN
Sbjct: 197 -AG------IRMHYGVRATEIA--AEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNV---- 243
Query: 282 HGTPFELAPDC------GIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRL--WTQA 333
E+A GI V++ + TS ++ A GD ++ + MR+ A
Sbjct: 244 -----EIAAAAGLPTAAGIIVDQQLLTSDPHISAIGDCA--LFESVRFGETMRVESVQNA 296
Query: 334 KHMGTYAAKCMVGA 347
A + G
Sbjct: 297 TDQARCVAARLTGD 310
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 88/485 (18%), Positives = 159/485 (32%), Gaps = 123/485 (25%)
Query: 1 MEFTYLIIGGGIAGVSCVEGL-AFLHPGESIGLVT---------PSGIVKAVTKTVPVTK 50
++ +++G G+A VS V L + G I +V P P++K
Sbjct: 6 LKAPVVVLGAGLASVSFVAELRQAGYQGL-ITVVGDEAERPYDRP-----------PLSK 53
Query: 51 -LLSDITVEETDANKFEGL-CTVIVDT-VAAIDPRVNCVITEKQNRIKYKTLCICTGASP 107
++ E+ + ++ + DP+ + V + Y TL + TGA+P
Sbjct: 54 DFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAP 113
Query: 108 RKI----WYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSN--VDIVW 161
R + + V T+R + +Q L+ +++++G G I EL V +
Sbjct: 114 RALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSL 173
Query: 162 VVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVN 221
V + + A+F +H
Sbjct: 174 VETQPRLMSRAAPATLADFVAR--------------------------------YHAA-- 199
Query: 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQV 281
G + + + V VD V L +G A D+VV IGV+ N
Sbjct: 200 -QG------VDLRFERSVTGSVDGV-------VLLDDGTRIAADMVVVGIGVLAND---- 241
Query: 282 HGTPFELAPDC------GIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRL--WTQA 333
LA GI V+ +T+ +VYA GDV R+ W+ A
Sbjct: 242 -----ALARAAGLACDDGIFVDAYGRTTCPDVYALGDVT--RQRNPLSGRFERIETWSNA 294
Query: 334 KHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKF----FGYKVILLGLFNGQTLENDYE 389
++ G A+ +V P + + + ++ + GL +G E
Sbjct: 295 QNQGIAVARHLVD--PTAPGYAELPW--------YWSDQGALRIQVAGLASG------DE 338
Query: 390 ILLRVTRGEEYIKLVM---KDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPN 446
++R + K + + GR+ GA + L+ L +P
Sbjct: 339 EIVRGEVSLDAPKFTLIELQKGRIVGATCVNNARDFAPLRRLLAVGAKPD--RAALADPA 396
Query: 447 IDIDD 451
D+
Sbjct: 397 TDLRK 401
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 3e-29
Identities = 65/374 (17%), Positives = 119/374 (31%), Gaps = 92/374 (24%)
Query: 1 MEFTYLIIGGGIAGVSCVEGL-AFLHPGESIGLVT-----P------SGIVKAV-TKTVP 47
M IIG G+ G + + L A G I L+ P S KAV ++
Sbjct: 1 MATHVAIIGNGVGGFTTAQALRAEGFEGR-ISLIGDEPHLPYDRPSLS---KAVLDGSLE 56
Query: 48 VTKLLSDITVEETDANKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASP 107
+L++ + + + L V A+D + + + + + I TG+
Sbjct: 57 RPPILAE--ADWYGEARIDMLTGP---EVTALDVQTRTISLDDGTTLSADAIVIATGSRA 111
Query: 108 RKIWYS----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVW 161
R + P V+T+R V VL++ SA +++++G G I E+ + +
Sbjct: 112 RTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTI 171
Query: 162 VVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVN 221
+ + L + + T+
Sbjct: 172 LEAGDELLVRVLGRRIGAWLRG--------------------------------LLTE-- 197
Query: 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQV 281
G + +E V + V ++G + D + +G P
Sbjct: 198 -LG------VQVELGTGVVGF---SGEGQLEQVMASDGRSFVADSALICVGAEPAD---- 243
Query: 282 HGTPFELAPDC------GIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRL--WTQA 333
+LA G+ V+ T V+A GDV SW L + L + A
Sbjct: 244 -----QLARQAGLACDRGVIVDHCGATLAKGVFAVGDVA--SWPLR-AGGRRSLETYMNA 295
Query: 334 KHMGTYAAKCMVGA 347
+ A ++G
Sbjct: 296 QRQAAAVAAAILGK 309
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-26
Identities = 79/377 (20%), Positives = 124/377 (32%), Gaps = 99/377 (26%)
Query: 4 TYLIIGGGIAGVSCVEGL-AFLHPGESIGLVT-----P------SGIVKAVTKTVPVTKL 51
+I+G G G L G + ++ P S K L
Sbjct: 11 DVVIVGAGHGGAQAAIALRQNGFEGR-VLVIGREPEIPYERPPLS---KEY--------L 58
Query: 52 LSDITVEET---DANKFE--GLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGAS 106
+ T E A +E + + V ++DP + V + I+Y L TG
Sbjct: 59 AREKTFERICIRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGD 118
Query: 107 PRKI----WYSPHVITIRDTDSVAVLQEKLKS-AKKIVVIGNGGIATELVHELS--NVDI 159
PR++ V +R + L +L + AK VVIG G I E L+ V++
Sbjct: 119 PRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNV 178
Query: 160 VWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQ 219
+ + A +EF+Q H
Sbjct: 179 TLLEALPRVLARVAGEALSEFYQA--------------------------------EHRA 206
Query: 220 VNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNI 279
HG + + ++ I D T V++ +G DIV+ IG+VP
Sbjct: 207 ---HG------VDLRTGAAMDCIE--GDGTKVTGVRMQDGSVIPADIVIVGIGIVPCV-- 253
Query: 280 QVHGTPFELAPDC------GIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQ-MRL--W 330
G+ V+E +TS+++VYA GD + +RL
Sbjct: 254 -------GALISAGASGGNGVDVDEFCRTSLTDVYAIGDCA--AHANDFADGAVIRLESV 304
Query: 331 TQAKHMGTYAAKCMVGA 347
A M T AAK + GA
Sbjct: 305 QNANDMATAAAKDICGA 321
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 2e-24
Identities = 64/404 (15%), Positives = 115/404 (28%), Gaps = 95/404 (23%)
Query: 5 YLIIGGGIAGVSCVEGLAFLHPGESI--------------GLVTP---SGIVKAVTKTVP 47
++IG G L P + G+ P SG V
Sbjct: 6 VVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGI--PYYVSGEVS------N 57
Query: 48 VTKLLSDITVEETDANKFEGLCTVIVDT---VAAIDP-----RVNCVITEKQNRIKYKTL 99
+ L + D F V AID + + T ++ +KY L
Sbjct: 58 IESLQATPYNVVRDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKL 117
Query: 100 CICTGASPRKI----WYSPHVITIRDTDSVAVLQEKLKS--AKKIVVIGNGGIATELV-- 151
+ G+ + V + + D +Q + + K V++G G I E+
Sbjct: 118 VLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVS 177
Query: 152 -HELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP 210
++ +D V I F ++ + + K
Sbjct: 178 LADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEK----------------------- 214
Query: 211 SLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSA 270
+ + + +V R+ +T+ T D+V+ A
Sbjct: 215 ------------ND------VVVHTGEKVVRLEGENGKVA---RVITDKRTLDADLVILA 253
Query: 271 IGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLW 330
GV PN+ + EL P I V+ M+TS +++A GD T + + L
Sbjct: 254 AGVSPNTQL-ARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLG 312
Query: 331 TQAKHMGTYAAKCMVG-AVKNEPVIQDFSFEMFTHMTKFFGYKV 373
+ A G + + + K F
Sbjct: 313 SMANRQGRVIGTNLADGDATFPGAVG-------SWAVKLFEGSA 349
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 9e-24
Identities = 56/310 (18%), Positives = 100/310 (32%), Gaps = 65/310 (20%)
Query: 76 VAAIDP-----RVNCVITEKQNRIKYKTLCICTGASPRKI----WYSPHVITIRDTDSVA 126
V +DP +V +IT ++ Y L + TG+ P S V ++ +
Sbjct: 81 VTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAK 140
Query: 127 VLQEKLKSAKKIVVIGNGGIATELVHELSNVDI-VWVV-KDKHISATFLDPGAAEFFQDS 184
L E+ AK I +IG+G I EL SN + V ++ + + + D +
Sbjct: 141 KLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKD 200
Query: 185 INKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVD 244
HG + + +V +
Sbjct: 201 YEA-----------------------------------HG------VNLVLGSKVAAFEE 219
Query: 245 SEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSI 304
+D+ K +G DI + IG PN+ + + + I +E M +S
Sbjct: 220 VDDEII---TKTLDGKEIKSDIAILCIGFRPNTELLKGK--VAMLDNGAIITDEYMHSSN 274
Query: 305 SNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG-AVKNEPVIQDFSFEMFT 363
+++AAGD ++ + L T A G + VK+ +
Sbjct: 275 RDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDKVKDMGTQS-------S 327
Query: 364 HMTKFFGYKV 373
K +G
Sbjct: 328 SGLKLYGRTY 337
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 9e-24
Identities = 75/403 (18%), Positives = 129/403 (32%), Gaps = 101/403 (25%)
Query: 5 YLIIGGGIAGVSCVEGLAFLHPGESI--------------GLVTP---SGIVKAVTKTVP 47
+++GG G S L L + I GL P G++ K +
Sbjct: 39 IVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGL--PYYIGGVITERQKLLV 96
Query: 48 VTKLLSDITVEETDANKFEGLCTVIVDT-VAAIDP-----RVNCVITEKQNRIKYKTLCI 101
T E + +F L + V + V I+ + V T + Y L +
Sbjct: 97 QTV--------ERMSKRF-NL-DIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLIL 146
Query: 102 CTGASPRK-----IWYSPHVITIRDTDSVAVLQEKL--KSAKKIVVIGNGGIATELVHEL 154
GA P I + + T+R+ ++ + K + VIG G I E+V L
Sbjct: 147 SPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENL 206
Query: 155 SN--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212
+++ V + D A + + +
Sbjct: 207 RERGIEVTLVEMANQVMPPI-DYEMAAYVHEHMKN------------------------- 240
Query: 213 GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIG 272
H + + + V+ + ++ V+L +G D+++ AIG
Sbjct: 241 ----------HD------VELVFEDGVDALEENGA-----VVRLKSGSVIQTDMLILAIG 279
Query: 273 VVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQ 332
V P S++ G L I VNE QTS ++YA GD + + + L
Sbjct: 280 VQPESSL-AKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWP 338
Query: 333 AKHMGTYAAKCMVG--AVKNEPVIQDFSFEMFTHMTKFFGYKV 373
A G A + G + + T + K F V
Sbjct: 339 ANRQGRMLADIIHGHTDSLYKGTLG-------TSVAKVFDLTV 374
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 53/308 (17%), Positives = 96/308 (31%), Gaps = 64/308 (20%)
Query: 76 VAAIDP---RVNCVITEKQNRIKYKTLCICTGASPRKI----WYSPHVITIRDTDSVAVL 128
V A+D + E+Q Y L + TGAS + ++ +
Sbjct: 81 VVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQTEKLLKYKFLSGALAA 140
Query: 129 QEKLKSAKKIVVIGNGGIATELVHELSNVDI-VWVV-KDKHISATFLDPGAAEFFQDSIN 186
L++++ + VIG G I E + L + V V +++ + D Q S+
Sbjct: 141 VPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLE 200
Query: 187 KTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSE 246
K + + V I ++
Sbjct: 201 K-----------------------------------QA------VIFHFEETVLGIEETA 219
Query: 247 DDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISN 306
+ V T+ +CD + A+ + P + D I V+ +QTS+ N
Sbjct: 220 NGI----VLETSEQEISCDSGIFALNLHPQLAYLDKK--IQRNLDQTIAVDAYLQTSVPN 273
Query: 307 VYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG-AVKNEPVIQDFSFEMFTHM 365
V+A GD + + + F L A G A + + ++ T
Sbjct: 274 VFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKTHRFIGSLR-------TMG 326
Query: 366 TKFFGYKV 373
TK Y +
Sbjct: 327 TKVGDYYL 334
|
| >1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 4e-23
Identities = 59/369 (15%), Positives = 129/369 (34%), Gaps = 80/369 (21%)
Query: 76 VAAIDP-----RVNCVITEKQNRIKYKTLCICTGASPRKI-WYSPHVITIRDTDSVAVLQ 129
V AI+ V T +Q Y L + GAS + + S T+R+ + +
Sbjct: 81 VIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAID 140
Query: 130 EKLK--SAKKIVVIGNGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSI 185
+ +K K++V+G G ++ E++ L + + + I+ D + D +
Sbjct: 141 QFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLM-DADMNQPILDEL 199
Query: 186 NKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDS 245
+K I + E+ I +
Sbjct: 200 DK-----------------------------------RE------IPYRLNEEINAINGN 218
Query: 246 EDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSIS 305
E + +G D+++ +G PNS + + +L I VN+ +T++
Sbjct: 219 E-------ITFKSGKVEHYDMIIEGVGTHPNSKF-IESSNIKLDRKGFIPVNDKFETNVP 270
Query: 306 NVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG--AVKNEPVIQDFSFEMFT 363
N+YA GD+ T + + L A + A+ + G ++ + +
Sbjct: 271 NIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLG-------N 323
Query: 364 HMTKFFGYKVILLGLFNGQTLENDYEILLRVTR---------GEEYIKLV--MKDGRMQG 412
++ KFF Y +G+ + + DY+++ ++++ + ++
Sbjct: 324 NIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDTSNRQILR 383
Query: 413 AVLIGETEI 421
A +G+
Sbjct: 384 AAAVGKEGA 392
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449 | Back alignment and structure |
|---|
Score = 98.3 bits (246), Expect = 2e-22
Identities = 56/308 (18%), Positives = 101/308 (32%), Gaps = 64/308 (20%)
Query: 76 VAAIDP-RVNCVITEKQNRIKYKTLCICTGASPRKI----WYSPHVITIRDTDSVAVLQE 130
V +D V + ++ L GASP+ V T ++E
Sbjct: 82 VIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDALAIRE 141
Query: 131 KLK--SAKKIVVIGNGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSIN 186
++ + +V+IG G I E+ + ++ +V+ + + D + ++ +
Sbjct: 142 YMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKL- 200
Query: 187 KTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSE 246
+K VNL +I E
Sbjct: 201 --------------------KKH----------VNLR-----------LQEITMKIEGEE 219
Query: 247 DDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISN 306
+T+ + ++V+ A G+ PN + + I NE MQTS+ N
Sbjct: 220 RVE----KVVTDAGEYKAELVILATGIKPNIEL-AKQLGVRIGETGAIWTNEKMQTSVEN 274
Query: 307 VYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG-AVKNEPVIQDFSFEMFTHM 365
VYAAGDV + + + L MG A + G + V+ T +
Sbjct: 275 VYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKELHFPGVLG-------TAV 327
Query: 366 TKFFGYKV 373
TKF ++
Sbjct: 328 TKFMDVEI 335
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 9e-22
Identities = 82/406 (20%), Positives = 136/406 (33%), Gaps = 88/406 (21%)
Query: 5 YLIIGGGIAGVSCVEGLAFLHPGESI--------------GLVTP---SGIVKAVTKTVP 47
LIIGG G S L I GL P SG + + V
Sbjct: 4 ILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGL--PYHISGEIAQRSALVL 61
Query: 48 VTKLLSDITVEETDANKFEGLCTVIVDT-VAAIDP-----RVNCVITEKQNRIKYKTLCI 101
T E+ +F + V V V AID V ++ + + Y TL +
Sbjct: 62 QTP--------ESFKARF-NV-EVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLL 111
Query: 102 CTGASPRKI----WYSPHVITIRDTDSVAVLQEKLK--SAKKIVVIGNGGIATELVHELS 155
GA+P +P ++R+ + + + ++ + + V+G G I E++ L
Sbjct: 112 SPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLH 171
Query: 156 N--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLG 213
+ + + + D A F +I ++G
Sbjct: 172 HLGIKTTLLELADQVMTPV-DREMAGFAHQAIR--------------------DQG---- 206
Query: 214 PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAY-----VKLTNGHTHACDIVV 268
V+L + ++++ + V ED + L+NG D+++
Sbjct: 207 ------VDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLI 260
Query: 269 SAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMR 328
AIGV P + + + GI VN +MQTS +YA GD + Q +
Sbjct: 261 MAIGVRPETQL-ARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVP 319
Query: 329 LWTQAKHMGTYAAKCMVG-AVKNEPVIQDFSFEMFTHMTKFFGYKV 373
L A G AA M G + + T + K F V
Sbjct: 320 LAGPANRQGRMAADNMFGREERYQGTQG-------TAICKVFDLAV 358
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447 | Back alignment and structure |
|---|
Score = 95.2 bits (238), Expect = 2e-21
Identities = 62/312 (19%), Positives = 103/312 (33%), Gaps = 68/312 (21%)
Query: 76 VAAIDP-----RVNCVITEKQNRIKYKTLCICTGASPRKI----WYSPHVITIRDTDSVA 126
+ AI P V +++ ++ Y L I GA P ++ ++ +R
Sbjct: 79 ITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAI 138
Query: 127 VLQEKLK--SAKKIVVIGNGGIATELVHELSNVDI-VWVV-KDKHISATFLDPGAAEFFQ 182
L++K +VVIG+G I E + V V+ +LD +
Sbjct: 139 KLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLT 198
Query: 183 DSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERI 242
+ + + ITI VER
Sbjct: 199 EEMEA-----------------------------------NN------ITIATGETVERY 217
Query: 243 VDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQT 302
+T+ + + D+VV A+GV PN+ EL P+ I +E M+T
Sbjct: 218 EGDGRVQ----KVVTDKNAYDADLVVVAVGVRPNTAWLKGT--LELHPNGLIKTDEYMRT 271
Query: 303 SISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG-AVKNEPVIQDFSFEM 361
S +V+A GD ++ A + L T A+ G +A K + V
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVKPFPGVQG------ 325
Query: 362 FTHMTKFFGYKV 373
+ F YK
Sbjct: 326 -SSGLAVFDYKF 336
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 2e-21
Identities = 55/321 (17%), Positives = 104/321 (32%), Gaps = 77/321 (23%)
Query: 76 VAAIDP---RVNCVITEKQNRIKYKTLCICTGASPRK---------------IWYSPHVI 117
V +ID V ++ K + Y L TG+ P ++
Sbjct: 115 VQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQ 174
Query: 118 TIRDTDSVAVLQEKL--KSAKKIVVIGNGGIATELVHELSNVDI-VWVV-KDKHISATFL 173
++ + A + KL K K++ V+G G I EL V ++ A +
Sbjct: 175 FVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYY 234
Query: 174 DPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITI 233
D + ++ + HG I +
Sbjct: 235 DRDLTDLMAKNMEE-----------------------------------HG------IQL 253
Query: 234 EYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCG 293
+ V+ + + +T+ + + D+V+ A+G PN+ + +L +
Sbjct: 254 AFGETVKEVAGNGKVE----KIITDKNEYDVDMVILAVGFRPNTTLGNGK--IDLFRNGA 307
Query: 294 IGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG-AVKNEP 352
VN+ +TSI VYA GD T + + + L + A G AA G ++
Sbjct: 308 FLVNKRQETSIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGTDLEGIG 367
Query: 353 VIQDFSFEMFTHMTKFFGYKV 373
V ++ +G +
Sbjct: 368 VQG-------SNGISIYGLHM 381
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 2e-21
Identities = 58/312 (18%), Positives = 101/312 (32%), Gaps = 68/312 (21%)
Query: 76 VAAIDP-----RVNCVITEKQNRIKYKTLCICTGASPRKI----WYSPHVITIRDTDSVA 126
V +D T+ Y L I TG P V ++
Sbjct: 116 VTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAE 175
Query: 127 VLQEKLKS--AKKIVVIGNGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQ 182
+ + L++ + + +IG G I E+ + + ++ HI + D AE+
Sbjct: 176 RILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIY-DGDMAEYIY 234
Query: 183 DSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERI 242
+K H I I + V+
Sbjct: 235 KEADK-----------------------------------HH------IEILTNENVKAF 253
Query: 243 VDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQT 302
+E T+ T+ D+V+ ++GV PN++ + GT I VN MQT
Sbjct: 254 KGNERVE----AVETDKGTYKADLVLVSVGVKPNTDF-LEGTNIRTNHKGAIEVNAYMQT 308
Query: 303 SISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG-AVKNEPVIQDFSFEM 361
++ +VYAAGD T + + + + T A G A M+ + +
Sbjct: 309 NVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKRRAFKGTLG------ 362
Query: 362 FTHMTKFFGYKV 373
T + KF +
Sbjct: 363 -TGIIKFMNLTL 373
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 1e-13
Identities = 54/337 (16%), Positives = 108/337 (32%), Gaps = 60/337 (17%)
Query: 6 LIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPS--------------GIVKAVTKTVPVTK 50
L++GG ++ L L + + ++ S G+ V +++
Sbjct: 5 LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSE 64
Query: 51 LLSDITVEETDANKFEGLCTVIVDTVAAIDPRVNCVITEKQN----RIKYKTLCICTGAS 106
L + + TV ID + + V K + +Y + + GA
Sbjct: 65 ALPEKGI------------QFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAH 112
Query: 107 PR--KI-WYSPHVITIRDTDSVAVLQEKLKSAKK-IVVIGNGGIATELVHELSNVDIVWV 162
+ + + ++ + + L+EKL+S + + IG+G H
Sbjct: 113 LATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQG--HNPKPKVPENF 170
Query: 163 VKDKHISATFLDPGAA---EFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQ 219
V + + G K + + + GE L P+
Sbjct: 171 VPNADSAC----EGPVFEMSLMLHGYFKKKGMLDKV---HVTVFSPGEYLSDLSPNSRKA 223
Query: 220 VNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNI 279
V + I + ++ +++ I + E + G+T DI + N +
Sbjct: 224 VASIYNQLG--IKLVHNFKIKEIREHE-------IVDEKGNTIPADITILLPPYTGNPAL 274
Query: 280 QVHGTPFELAPDCG-IGVNELMQ-TSISNVYAAGDVC 314
+ + +L D G I + M NVYA GD
Sbjct: 275 K--NSTPDLVDDGGFIPTDLNMVSIKYDNVYAVGDAN 309
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 5e-11
Identities = 24/134 (17%), Positives = 40/134 (29%), Gaps = 25/134 (18%)
Query: 210 PSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVS 269
D H + G + +E + + I D V L +G + A + +
Sbjct: 174 VEPDADQHALLAARG------VRVETT-RIREIAGHAD------VVLADGRSIALAGLFT 220
Query: 270 AIGVVPNSNIQVH-GTPFELAPDCG-IGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQM 327
+ + G E P I + + QT+ ++A GDV P
Sbjct: 221 QPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARP----------A 270
Query: 328 RLWTQAKHMGTYAA 341
A G A
Sbjct: 271 GSVALAVGDGAMAG 284
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 36/238 (15%), Positives = 69/238 (28%), Gaps = 60/238 (25%)
Query: 90 KQNRIKYKTLCICTGASPRKIWYSP---HVITIRDTDSVAVLQEKLKSAKKIVVIGNGGI 146
+ + TG P +D L+E+ KK+VV+G G I
Sbjct: 143 TTEVYSANHILVATGGKAIFPENIPGFELGTD---SDGFFRLEEQ---PKKVVVVGAGYI 196
Query: 147 ATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNT 204
EL + V++ + + F D D K
Sbjct: 197 GIELAGVFHGLGSETHLVIRGETVLRKF-DECIQNTITDHYVK----------------- 238
Query: 205 GGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHT-HA 263
G I + ++ ++ + + + + + +
Sbjct: 239 ------------------EG------INVHKLSKIVKVEKNVET-DKLKIHMNDSKSIDD 273
Query: 264 CDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVC-----TP 316
D ++ IG + + +L I +E T++ N+Y+ GDV TP
Sbjct: 274 VDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDVVGKVELTP 331
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 5e-10
Identities = 48/299 (16%), Positives = 89/299 (29%), Gaps = 78/299 (26%)
Query: 62 ANK---FEGLCTVIVDTVAAIDPRVNCVITE-KQNRIKYKTLCICTGASPRKI----WYS 113
+ G +I T R+ + + + + + TGASPR +
Sbjct: 107 SMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQPDG 166
Query: 114 PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSN----VDIVWVVKDKHIS 169
++T R + L ++V+G+G E V + V +V H+
Sbjct: 167 ERILTWRQ----LYDLDALP--DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQD--HVL 218
Query: 170 ATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDT 229
D AA ++S +
Sbjct: 219 PYE-DADAALVLEESFAER----------------------------------------- 236
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFEL 288
+ + + + + V +T+G T + IG VPN+ + + +L
Sbjct: 237 GVRLFKNARAASVTRTGA---GVLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQL 293
Query: 289 APDCGIGVNELMQTSISNVYAAGDVCTPSWDLA-KQWFQMRLWTQAKHMGTYAAKCMVG 346
+ V+ + +T + +YAAGD LA A G A +G
Sbjct: 294 GRGNYLTVDRVSRTLATGIYAAGDCTGLLP-LASV----------AAMQGRIAMYHALG 341
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 5e-10
Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 4/88 (4%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELA 289
I + + + + V+ +G + + EL
Sbjct: 194 NIPVITE-SIRTLQG--EGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQF-IEQLGCELQ 249
Query: 290 PDCGIGVNELMQTSISNVYAAGDVCTPS 317
+ +++ +TS N+Y AG+ T
Sbjct: 250 SNGTFVIDDFGRTSEKNIYLAGETTTQG 277
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 9e-10
Identities = 51/242 (21%), Positives = 84/242 (34%), Gaps = 64/242 (26%)
Query: 87 ITEKQNRIKYKTLCICTGASPRKIWYSP---HVITIRDTDSVAVLQEKLKSA-KKIVVIG 142
++ RI + + I TGA +T S + L+ K IV++G
Sbjct: 146 LSVTGERISAEKILIATGAKIVSNSAIKGSDLCLT-----SNEIFD--LEKLPKSIVIVG 198
Query: 143 NGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRM 200
G I E + V + + I F D + D++
Sbjct: 199 GGYIGVEFANIFHGLGVKTTLLHRGDLILRNF-DYDLRQLLNDAMVA------------- 244
Query: 201 RYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGH 260
G I+I Y V ++ +E+ V LTNG
Sbjct: 245 ----------------------KG------ISIIYEATVSQVQSTENCYN---VVLTNGQ 273
Query: 261 THACDIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVC----- 314
T D V+ A G VPN+ + + ++ + V+E M T++S+++A GDV
Sbjct: 274 TICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVTGHIQL 333
Query: 315 TP 316
TP
Sbjct: 334 TP 335
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFELA 289
I I + ++ + D + + V +G T D+V+ AIG +P + ++Q+ +L
Sbjct: 250 IEIMTNENPAKVSLNTDGSKH--VTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLT 307
Query: 290 PDCGIGVNELMQTSISNVYAAGDVC-----TP 316
P G+ V+E +T++ N+YA GD+ TP
Sbjct: 308 PKGGVQVDEFSRTNVPNIYAIGDITDRLMLTP 339
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 33/189 (17%), Positives = 62/189 (32%), Gaps = 52/189 (27%)
Query: 136 KKIVVIGNGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKP 193
+++ V+G G I EL ++ +F DP +E + +N
Sbjct: 168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSF-DPMISETLVEVMNA------ 220
Query: 194 ETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAY 253
G + + + +V + D +
Sbjct: 221 -----------------------------EG------PQLHTNAIPKAVVKNTDGSLT-- 243
Query: 254 VKLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGD 312
++L +G + D ++ AIG P + NI + + I V++ T+I +YA GD
Sbjct: 244 LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGD 303
Query: 313 VC-----TP 316
TP
Sbjct: 304 NTGAVELTP 312
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFELA 289
I + ++ + D T + V +G D+V+ AIG VP S +Q+ E+A
Sbjct: 246 INVRTHENPAKVTKNADGTRH--VVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVA 303
Query: 290 PDCGIGVNELMQTSISNVYAAGDVC-----TP 316
+ I V+ +T++ N+YA GDV TP
Sbjct: 304 KNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTP 335
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 4e-09
Identities = 45/233 (19%), Positives = 70/233 (30%), Gaps = 62/233 (26%)
Query: 93 RIKYKTLCICTGASPRKIWYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVH 152
K K L + GA P + + V + + +VV+G A E
Sbjct: 172 VFKAKNLILAVGAGPGTLDVPGVNAKGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGC 231
Query: 153 ELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP 210
+ V +V+ + + D + D + + +G
Sbjct: 232 FFNATGRRTVMLVRTEPLKLIK-DNETRAYVLDRMKE--------------------QG- 269
Query: 211 SLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVV 268
+ I V RI + + A V +T D V
Sbjct: 270 --------------------MEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVF 309
Query: 269 SAIGVVPNSNIQVHGTPFELAPDCG--------IGVNELMQTSISNVYAAGDV 313
+G P S ELA G + VNE +QTS+ NVYA GD+
Sbjct: 310 LGLGEQPRSA--------ELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDL 354
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 5e-09
Identities = 54/392 (13%), Positives = 99/392 (25%), Gaps = 87/392 (22%)
Query: 6 LIIGGGIAGVSCVEGLA-FLHPGESIGLVTPS--------------GIVKAVTKTVPVTK 50
+I+G G G+ + L G + L++ + G + P+
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRH 67
Query: 51 LLSDITVEETDANKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKI 110
+ + I + ID + N + Y L I TG
Sbjct: 68 YVERKGI------------HFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLA-- 113
Query: 111 W--------YSPHVITIRDTDSV----AVLQEKLKSAKKIVVIGNGGI-----ATELVHE 153
+ + V +I D A Q L+ IV+ G A E
Sbjct: 114 FENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAM- 172
Query: 154 LSNVDIVW---VVKDKHISATFL--DPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEK 208
V ++DK S TF+ +P + + K
Sbjct: 173 --IVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSK-GILTKGLKEE-------- 221
Query: 209 GPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVV 268
G + +T + + + + E I + +
Sbjct: 222 ----GIEAYTNCKVTKVEDNKMYVTQVDEKGETIKE---------------MVLPVKFGM 262
Query: 269 SAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQ-TSISNVYAAGDVCTPSWDLAKQWFQM 327
V G P + V+E + +N++AAG
Sbjct: 263 MIPAFKGVP--AVAGVEGLCNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTG 320
Query: 328 RLWT--QAKHMGTYAAKCMVGAVKNEPVIQDF 357
T + M + A + ++ Q
Sbjct: 321 APKTGYMIESMVSAAVHNIKADLEGRKGEQTM 352
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 8e-09
Identities = 49/266 (18%), Positives = 92/266 (34%), Gaps = 72/266 (27%)
Query: 64 KFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSP------HVI 117
F +++ + + N + E+ ++ + + I G P P + I
Sbjct: 112 SFLSENRILIKGTKDNNNKDNGPLNEE--ILEGRNILIAVGNKPVF----PPVKGIENTI 165
Query: 118 TIRDTDSVAVLQEKLKSAKKIVVIGNGGIATEL---VHEL-SNVDIVWVVKDKHISATFL 173
+ S +K +KKI ++G+G IA EL + L + I + I F
Sbjct: 166 S-----SDEFFN--IKESKKIGIVGSGYIAVELINVIKRLGIDSYIF--ARGNRILRKF- 215
Query: 174 DPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITI 233
D ++ + K + I I
Sbjct: 216 DESVINVLENDMKK-----------------------------------NN------INI 234
Query: 234 EYSCEVERIVDSEDDTCNAYVKLTNGHTH-ACDIVVSAIGVVPN-SNIQVHGTPFELAPD 291
+V I D + + L++G + D V+ +G P+ N+++ E +
Sbjct: 235 VTFADVVEIKKVSDKNLS--IHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVET-NN 291
Query: 292 CGIGVNELMQTSISNVYAAGDVCTPS 317
I V+E +TS++N+YA GD C
Sbjct: 292 NYIVVDENQRTSVNNIYAVGDCCMVK 317
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 34/184 (18%), Positives = 55/184 (29%), Gaps = 23/184 (12%)
Query: 101 ICTGASPRKIWY----SPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATE----LVH 152
+ +G PR P V++ D VL++K K+ +IG GGI + L
Sbjct: 461 LASGIVPRTPPIDGIDHPKVLSYLD-----VLRDKAPVGNKVAIIGCGGIGFDTAMYLSQ 515
Query: 153 ELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212
+ A + + + + +R G G +
Sbjct: 516 PGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTT 575
Query: 213 GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIG 272
G T + G + + ++I DD V A D VV G
Sbjct: 576 GWIHRTTLLSRG------VKMIPGVSYQKI----DDDGLHVVINGETQVLAVDNVVICAG 625
Query: 273 VVPN 276
PN
Sbjct: 626 QEPN 629
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 3e-08
Identities = 40/242 (16%), Positives = 67/242 (27%), Gaps = 63/242 (26%)
Query: 87 ITEKQNRIKYKTLCICTGASPRKIWYSP---HVITIRDTDSVAVLQEKLKSA-KKIVVIG 142
+ + + + I G P P IT S L + + I++ G
Sbjct: 125 LLASGKTVTAERIVIAVGGHPSPHDALPGHELCIT-----SNEAFD--LPALPESILIAG 177
Query: 143 NGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRM 200
G IA E + V + + K I + F D ++ +
Sbjct: 178 GGYIAVEFANIFHGLGVKTTLIYRGKEILSRF-DQDMRRGLHAAMEE------------- 223
Query: 201 RYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGH 260
G I I ++ + D
Sbjct: 224 ----------------------KG------IRILCEDIIQSVSADADGRR--VATTMKHG 253
Query: 261 THACDIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVC----- 314
D V+ A+G +PN+ + + I V+ +TS +YA GDV
Sbjct: 254 EIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTDRVQL 313
Query: 315 TP 316
TP
Sbjct: 314 TP 315
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 4e-08
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 8/92 (8%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFELA 289
I V + T V D V+ A+G PN+ ++ + E+
Sbjct: 222 IETHLEFAVAALERDAQGTTL--VAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQ 279
Query: 290 PDCGIGVNELMQTSISNVYAAGDVC-----TP 316
+ + + T++ VYA GD+ TP
Sbjct: 280 SNGMVPTDAYQNTNVPGVYALGDITGRDQLTP 311
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 1e-07
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNG-----HTHACDIVVSAIGVVPNSNIQVHGT 284
I + +V IV D VK + D V +G++P ++ + +
Sbjct: 204 NIPYIMNAQVTEIV--GDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSF-LKDS 260
Query: 285 PFELAPDCGIGVNELMQTSISNVYAAGDVCT 315
+L I V+ +TS+ VYAAGDV +
Sbjct: 261 GVKLDERGYIVVDSRQRTSVPGVYAAGDVTS 291
|
| >1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 24/154 (15%), Positives = 46/154 (29%), Gaps = 35/154 (22%)
Query: 6 LIIGGGIAGVSCVEGLAFLHPGESIGLVTPS--------------GIVKAVTKTVPVTKL 51
+++GGG G + + + P + L+ P+ G K + L
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGL 65
Query: 52 LSDITVEETDANKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPR--K 109
+ V+ D+ IDP V T Y + G K
Sbjct: 66 RAH-------------GIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDK 112
Query: 110 I------WYSPHVITIRDTDSVAVLQEKLKSAKK 137
I + + + A+L+++L+
Sbjct: 113 IEGYSEEAAAKLPHAWKAGEQTAILRKQLEDMAD 146
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 6e-07
Identities = 35/188 (18%), Positives = 61/188 (32%), Gaps = 50/188 (26%)
Query: 136 KKIVVIGNGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKP 193
K +VIG +A E L++ D+ +V+ + F D AE D +
Sbjct: 287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRGF-DQQMAEKVGDYMEN------ 338
Query: 194 ETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAY 253
G V +I +V +++
Sbjct: 339 --------------HG----------VKFAKLCVPDEIK---QLKVVDTENNKPGLLLVK 371
Query: 254 VKLTNG--HTHACDIVVSAIGVVPNS------NIQVHGTPFELAPDCGIGVNELMQTSIS 305
T+G + V+ A+G P + V +L + + + QT++S
Sbjct: 372 GHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGV-----KLDKNGRVVCTDDEQTTVS 426
Query: 306 NVYAAGDV 313
NVYA GD+
Sbjct: 427 NVYAIGDI 434
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 7e-07
Identities = 32/192 (16%), Positives = 59/192 (30%), Gaps = 57/192 (29%)
Query: 136 KKIVVIGNGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKP 193
K +V+G +A E L+ +D+ +V+ + F D A + + +
Sbjct: 211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRGF-DQDMANKIGEHMEE------ 262
Query: 194 ETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAY 253
G + R +VE+I
Sbjct: 263 --------------HG----------IKFI---RQFVPI-----KVEQIEAGTPGRLRVV 290
Query: 254 VKLTNGH---THACDIVVSAIGVVPNS------NIQVHGTPFELAPDCG-IGVNELMQTS 303
+ TN + V+ AIG + + V ++ G I V + QT+
Sbjct: 291 AQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGV-----KINEKTGKIPVTDEEQTN 345
Query: 304 ISNVYAAGDVCT 315
+ +YA GD+
Sbjct: 346 VPYIYAIGDILE 357
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 8e-07
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHT-----HACDIVVSAIGVVPNSNIQVHGT 284
+ + V+ I D V + N T + V IG P ++
Sbjct: 204 NVEFVLNSVVKEIKG--DKVVKQ-VVVENLKTGEIKELNVNGVFIEIGFDPPTDF-AKSN 259
Query: 285 PFELAPDCGIGVNELMQTSISNVYAAGDV 313
E + I V+E M+TS+ V+AAGD
Sbjct: 260 GIETDTNGYIKVDEWMRTSVPGVFAAGDC 288
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 9e-07
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 22/103 (21%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGH------THACDIVVSAIGVVPNS------N 278
+ + +V+ + + + V G D ++ AIG VPN+
Sbjct: 243 VEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNK 302
Query: 279 IQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVC-----TP 316
+ + + I V+E T++ +YA GDVC TP
Sbjct: 303 LGI-----QTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTP 340
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFELA 289
+TI V +V A V+L G D V+ A+G P + + +
Sbjct: 223 LTIRTGVRVTAVVPEAK---GARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTD 279
Query: 290 PDCGIGVNELMQTSISNVYAAGDV 313
I V+E ++T + ++YA GDV
Sbjct: 280 ERGRIPVDEHLRTRVPHIYAIGDV 303
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 39/255 (15%), Positives = 79/255 (30%), Gaps = 62/255 (24%)
Query: 73 VDTVAAIDPRVNCVITEKQNRIKYKTLCICTGA---SPRKIWYSPHVITIRDTDSVAVLQ 129
V +D T N + + + I G PRK+ ++ + + ++
Sbjct: 97 VTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVK 156
Query: 130 EKLKSA-KKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKT 188
K++V++G G A + L
Sbjct: 157 SVEDFKGKRVVIVGGGDSALDWTVGLIKN------------------------------- 185
Query: 189 NTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDD 248
A T+ R G T + + + I + EV I +S
Sbjct: 186 --AASVTLVHRGHEFQGHG---------KTAHEVERARANGTIDVYLETEVASIEESNGV 234
Query: 249 TCNAYVKLTNG--HTHACDIVVSAIGVVP------NSNIQVHGTPFELAPDCGIGVNELM 300
+++ ++G T D ++ IG +++++ + V+ M
Sbjct: 235 LTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYEN--------ALVVDSHM 286
Query: 301 QTSISNVYAAGDVCT 315
+TS+ +YAAGD+
Sbjct: 287 KTSVDGLYAAGDIAY 301
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 1e-06
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 13/118 (11%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFELA 289
+TI + +VE I D K + V+ AIG PN + L
Sbjct: 227 VTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALT 286
Query: 290 PDCGIGVNELMQTSISNVYAAGDVCTPSWDLA-KQWFQMRLWTQAKHMGTYAAKCMVG 346
IGV++ M+T++ ++YA GDV LA A+ G AA+ + G
Sbjct: 287 DRKAIGVDDYMRTNVGHIYAIGDVNGLLQ-LAHV----------AEAQGVVAAETIAG 333
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 2e-06
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPNSNI---QVHGT 284
KI + S V+ + + VKL +G + + +G+ + I
Sbjct: 197 KIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKF 256
Query: 285 PFELAPDCGIGVNELMQTSISNVYAAGDV 313
+ + V+ MQTS++ ++AAGD+
Sbjct: 257 LCNMEEGGQVSVDLKMQTSVAGLFAAGDL 285
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 3e-06
Identities = 75/451 (16%), Positives = 145/451 (32%), Gaps = 114/451 (25%)
Query: 57 VEETDANKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSPHV 116
VEE ++ L + I P + + +Q Y + + +
Sbjct: 83 VEEVLRINYKFLMSPI--KTEQRQPSMMTRMYIEQRDRLYNDNQV---FAKYNVSRLQPY 137
Query: 117 ITIRDTDSVAVLQEKLKSAKKIVVIGNGGIA-TELVHELSNVDIVWVVKDKHISATFLDP 175
+ +R L E L+ AK +++ G G T + + V +
Sbjct: 138 LKLRQ-----ALLE-LRPAKNVLIDGVLGSGKTWVALD--------VCLSYKVQCKM--D 181
Query: 176 GAAEFFQDSINKTNTAKPETIFKRMR--YNTGGEKGPSLGPDWHTQVNLHGSSRDTKITI 233
F+ +N N PET+ + ++ + P+W ++ + S + K+ I
Sbjct: 182 FKI-FW---LNLKNCNSPETVLEMLQKLLYQ-------IDPNWTSRSD---HSSNIKLRI 227
Query: 234 E-YSCEVERIVDSE---------DDTCNAYV--------K--LTNGHTHACDIVVSAIGV 273
E+ R++ S+ + NA K LT D + +A
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 274 VPNSNIQVHG-TPFE----LAPDCGIGVNEL----MQTS---ISNVYAA---GDVCTPSW 318
+ + TP E L +L + T+ +S + A + T W
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-IIAESIRDGLAT--W 344
Query: 319 DLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKN-EPVIQDFSFEMFTHMTKFFGYKV-I-- 374
D W + + + ++ EP F+ + F I
Sbjct: 345 D---NWKHVNCDKLTTIIES--------SLNVLEPAEYRKMFDRLS----VFPPSAHIPT 389
Query: 375 -LLGLFNGQTLENDYEILLRVTRGEEYIK--LVMKDGRMQGAVLIG-ETEIEEMCENL-- 428
LL L +++D +++ + K LV K + + E++ EN
Sbjct: 390 ILLSLIWFDVIKSDVMVVV-----NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 429 ----ILNQLDLTDIAD--DLLNPNIDIDDYF 453
I++ ++ D DL+ P +D YF
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPY--LDQYF 473
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 7e-06
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPNS-----NIQVH 282
K+ I+++ V + +DD +G + + VV A G P I +
Sbjct: 225 KLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLS 284
Query: 283 GTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
+ GI V+E M+T+I NV+A GD
Sbjct: 285 IS------KTGIVVDETMKTNIPNVFATGDA 309
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 9e-06
Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 22/110 (20%)
Query: 217 HTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVV 274
+ L + + ++ + E+ R+ E D V+ G +
Sbjct: 192 ASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYI 251
Query: 275 PNSNIQVHGTPFELAP--DCG-------IGVNELMQTSISNVYAAGDVCT 315
L P + G I V+ M TSI VYA GD+ T
Sbjct: 252 TK-----------LGPLANWGLALEKNKIKVDTTMATSIPGVYACGDIVT 290
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 9e-06
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHT-----HACDIVVSAIGVVPNSNI---QV 281
KI VE I D + + + + N T +G N+ + +
Sbjct: 193 KIEFLTPYVVEEIK--GDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQED 250
Query: 282 HGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
+ + I V+ M+T++ ++AAGD+
Sbjct: 251 NSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDI 282
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 9/98 (9%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNG-----HTHACDIVVSAIGVVPNS-NIQVHGT 284
C I + V + T D V+ AIG VP + + +
Sbjct: 240 TQFLKGCVPSHIKKLPTNQLQ--VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKA 297
Query: 285 PFELAPDCG-IGVNELMQTSISNVYAAGDVCTPSWDLA 321
P I V+ TS+ ++YA GDV +L
Sbjct: 298 GISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELT 335
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHT-----HACDIVVSAIGVVPNSNIQVHGT 284
+ I + + + + ++ + + A + IG++PN++ + G
Sbjct: 405 NVDIILNAQTTEVK-GDGSKVVG-LEYRDRVSGDIHSVALAGIFVQIGLLPNTHW-LEGA 461
Query: 285 PFELAPDCGIGVNELMQTSISNVYAAGDV 313
E I ++ +TS+ V+AAGD
Sbjct: 462 -LERNRMGEIIIDAKCETSVKGVFAAGDC 489
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 15/93 (16%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAY---VKLTNGHTHACDIVVSAIGVVPNS------NIQV 281
I + +D V+ D V+ AIG N V
Sbjct: 242 IPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGV 301
Query: 282 HGTPFELAPDCGIGVNELMQTSISNVYAAGDVC 314
+ D I V+ T+++N+YA GD+
Sbjct: 302 -----TVQKD-KIPVDSQEATNVANIYAVGDII 328
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 48/265 (18%), Positives = 86/265 (32%), Gaps = 78/265 (29%)
Query: 93 RIKYKTLCICTGASPRKIWYSPHVITIRDT---DSVAVLQEKLKSA-KKIVVIGNGGIAT 148
+ + + TGASP P + ++++ S L + +++ VIG+ +A
Sbjct: 136 VVMFDRCLVATGASPAV----PPIPGLKESPYWTSTEALA--SDTIPERLAVIGSSVVAL 189
Query: 149 ELV---HEL-SNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNT 204
EL L S V ++ ++ DP E +
Sbjct: 190 ELAQAFARLGSKVTVL--ARNTLFFRE--DPAIGEAVTAAFRA----------------- 228
Query: 205 GGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHAC 264
+G I + + ++ + + +V T
Sbjct: 229 ---EG---------------------IEVLEHTQASQVAHMDGE----FVLTTTHGELRA 260
Query: 265 DIVVSAIGVVPNS---NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLA 321
D ++ A G PN+ + G + I +++ M+TS N+YAAGD
Sbjct: 261 DKLLVATGRTPNTRSLALDAAGV--TVNAQGAIVIDQGMRTSNPNIYAAGDCT------- 311
Query: 322 KQWFQMRLWTQAKHMGTYAAKCMVG 346
Q + A GT AA M G
Sbjct: 312 ---DQPQFVYVAAAAGTRAAINMTG 333
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNG-----HTHACDIVVSAIGVVPNSNIQVHGT 284
+ I + + + + ++ + H + IG++PN+N + G
Sbjct: 194 NVDIILNAQTTEVK-GDGSKVVG-LEYRDRVSGDIHNIELAGIFVQIGLLPNTNW-LEGA 250
Query: 285 PFELAPDCGIGVNELMQTSISNVYAAGDV 313
E I ++ +T++ V+AAGD
Sbjct: 251 -VERNRMGEIIIDAKCETNVKGVFAAGDC 278
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 6e-05
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNG---HTHACDIVVSAIGVVPNS-NIQVHGTPF 286
+ + +V VD+ D V+ + G D+V+ + G P + + +
Sbjct: 233 MKFKLKTKVVG-VDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGV 291
Query: 287 ELAPDCGIGVNELMQTSISNVYAAGDV 313
E I VNE T++S VYA GDV
Sbjct: 292 ETDKLGRILVNERFSTNVSGVYAIGDV 318
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 7e-05
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 16/92 (17%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHT-----HACDIVVSAIGVVPNSNI---QV 281
K+ + VE I D+ + VKL N T A D V IG VPN+ V
Sbjct: 202 KMKFIWDTAVEEIQ--GADSVSG-VKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTV 258
Query: 282 HGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
L D + V + + T+I ++AAGDV
Sbjct: 259 -----SLRDDGYVDVRDEIYTNIPMLFAAGDV 285
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 24/101 (23%)
Query: 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG-----HTHACDIVVSAIGVVPNSNIQV 281
+K+ + + +D + L D ++ G V +
Sbjct: 200 HASKVNVLTPFVPAEL--IGEDKIEQ-LVLEEVKGDRKEILEIDDLIVNYGFVSSL---- 252
Query: 282 HGTPFELAPDCG-------IGVNELMQTSISNVYAAGDVCT 315
P + + G I V M+T+I +AAGD+CT
Sbjct: 253 --GPIK---NWGLDIEKNSIVVKSTMETNIEGFFAAGDICT 288
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPNS-NIQVHGTPF 286
+ + V ++ ED Y +G T + V++A G N + + T
Sbjct: 228 EFYFDAKARVISTIEKEDAVEVIYFD-KSGQKTTESFQYVLAATGRKANVDKLGLENTSI 286
Query: 287 ELAPDCGIGVNEL-MQTSISNVYAAGDV 313
EL +EL +QTS+ +++ AGD
Sbjct: 287 ELDKKNSPLFDELTLQTSVDHIFVAGDA 314
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 260 HTHACDIVVSAIG-VVPNSNIQVHGTPFELAPDCGIGVNEL-MQTSISNVYAAGDVCT 315
D+V+SA G V+ + ++ +P + V+ MQTS V+A GD+
Sbjct: 427 VHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVG 484
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 7e-04
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNG-----HTHACDIVVSAIGVVPNS-NIQVHGT 284
I + +V V S D A V T ++V+ A G P++ + +
Sbjct: 254 IDFKLGAKVTGAVKSGD---GAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKA 310
Query: 285 PFELAPDCGIGVNELMQTSISNVYAAGDV 313
L + ++ QTSI+ VYA GDV
Sbjct: 311 GVVLDSRGRVEIDRHFQTSIAGVYAIGDV 339
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 454 | |||
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 100.0 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 100.0 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 100.0 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 100.0 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 100.0 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 100.0 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 100.0 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 100.0 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 100.0 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 100.0 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 100.0 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 100.0 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 100.0 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 100.0 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 100.0 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 100.0 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 100.0 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 100.0 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 100.0 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 100.0 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 100.0 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 100.0 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 100.0 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 100.0 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 100.0 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 100.0 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 100.0 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 100.0 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 100.0 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 100.0 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 100.0 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 100.0 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 100.0 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 100.0 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 100.0 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 100.0 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 100.0 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 100.0 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 100.0 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 100.0 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 100.0 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 100.0 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 100.0 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 100.0 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 100.0 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 100.0 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 100.0 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 100.0 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 100.0 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 100.0 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 100.0 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 100.0 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 100.0 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 100.0 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 100.0 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 100.0 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 100.0 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 100.0 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 100.0 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 100.0 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 100.0 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 100.0 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 100.0 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 100.0 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 100.0 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 100.0 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 100.0 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 100.0 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 100.0 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 100.0 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 100.0 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 100.0 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 99.98 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.97 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.97 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 99.97 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.97 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.97 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.96 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.96 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 99.95 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.95 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 99.94 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 99.94 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 99.92 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.87 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 99.84 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 99.73 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 99.65 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.53 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 99.49 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 99.26 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.13 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 99.07 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 99.07 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 99.04 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.03 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 98.9 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 98.89 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.87 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.84 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.81 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.8 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 98.8 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 98.78 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.77 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.74 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.74 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 98.71 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 98.69 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.69 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 98.68 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 98.67 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 98.67 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.66 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.64 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 98.6 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 98.6 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 98.6 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.6 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.58 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 98.57 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 98.55 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 98.54 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.54 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.54 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 98.53 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 98.52 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 98.5 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.5 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.49 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.48 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 98.48 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 98.47 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 98.47 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.47 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 98.46 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 98.46 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 98.46 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 98.45 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 98.45 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 98.45 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 98.45 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 98.41 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 98.38 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 98.37 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 98.37 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.36 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 98.35 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 98.35 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 98.34 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 98.33 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 98.33 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 98.31 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 98.31 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 98.3 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 98.29 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 98.29 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.29 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 98.28 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 98.27 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.26 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 98.26 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 98.25 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 98.25 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 98.24 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 98.23 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.22 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 98.22 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 98.22 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 98.22 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.21 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 98.21 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 98.19 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 98.18 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 98.18 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.17 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 98.17 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 98.17 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 98.16 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 98.16 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 98.16 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 98.15 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 98.14 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.14 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 98.14 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 98.13 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 98.13 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 98.11 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 98.11 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 98.11 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 98.1 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 98.1 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 98.09 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 98.09 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 98.09 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 98.09 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 98.09 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 98.09 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 98.08 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 98.07 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.07 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 98.06 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 98.06 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 98.06 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 98.05 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 98.05 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 98.04 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 98.04 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 98.03 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 98.02 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 98.02 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.02 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 98.01 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 98.01 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 98.01 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 98.01 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 98.01 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.0 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 97.99 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 97.99 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 97.99 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 97.98 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 97.96 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 97.96 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 97.96 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 97.96 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 97.95 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 97.94 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 97.93 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.92 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 97.91 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 97.9 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 97.88 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 97.88 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 97.87 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 97.86 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 97.86 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.85 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 97.85 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.84 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 97.84 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 97.83 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 97.82 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 97.8 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 97.79 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 97.79 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 97.79 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 97.79 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 97.79 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 97.79 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 97.78 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 97.76 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 97.75 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 97.75 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 97.75 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 97.74 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 97.73 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 97.69 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 97.69 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 97.67 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 97.66 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 97.66 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 97.66 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 97.65 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 97.64 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 97.64 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 97.63 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 97.62 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 97.62 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 97.62 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 97.62 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 97.61 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 97.61 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.61 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 97.6 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 97.59 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 97.58 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 97.57 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 97.56 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 97.56 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 97.56 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 97.53 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 97.52 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 97.5 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 97.5 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 97.5 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.49 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 97.49 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 97.48 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 97.47 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 97.46 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 97.46 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 97.44 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 97.43 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 97.42 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 97.41 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 97.4 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 97.4 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 97.39 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 97.39 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 97.37 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 97.37 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 97.36 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 97.35 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 97.34 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 97.34 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 97.34 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 97.33 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 97.31 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 97.3 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 97.2 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 97.18 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 97.14 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 97.09 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 97.08 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 97.07 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 97.06 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 97.04 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 97.04 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 97.03 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 97.01 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 97.0 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 96.97 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 96.96 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 96.95 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 96.93 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 96.93 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 96.92 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 96.9 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 96.9 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 96.89 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 96.87 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 96.85 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 96.8 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 96.74 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 96.72 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 96.7 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 96.69 | |
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 96.66 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 96.65 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 96.6 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 96.59 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 96.58 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 96.57 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 96.5 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 96.42 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 96.39 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 96.37 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 96.35 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 96.31 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 96.09 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 96.09 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 96.07 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 95.95 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 95.94 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 95.86 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 95.2 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.19 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.09 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 94.86 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 94.77 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 94.76 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 94.51 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 94.29 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 94.27 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 94.23 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 94.23 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 94.23 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 94.04 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 94.03 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 93.61 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 93.54 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 93.02 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 92.99 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 92.62 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 92.41 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 92.38 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 92.33 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 92.28 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 91.95 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 91.95 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 91.78 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 91.57 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 91.54 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 91.52 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 91.39 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 91.35 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 91.2 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 91.14 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 91.07 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 90.92 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 90.91 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 90.86 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 90.82 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 90.77 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 90.73 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 90.71 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 90.67 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 90.58 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 90.46 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 90.35 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 90.33 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 90.33 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 90.28 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 90.21 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 90.19 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 89.98 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 89.96 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 89.58 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 89.54 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 89.52 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 89.51 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 89.44 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 89.4 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 89.39 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 89.38 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 89.37 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 89.21 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 89.19 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 88.96 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 88.9 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 88.86 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 88.85 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 88.78 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 88.65 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 88.6 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 88.59 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 88.54 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 88.52 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 88.5 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 88.47 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 88.46 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 88.44 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 88.43 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 88.4 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 88.37 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 88.34 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 88.33 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 88.11 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 88.09 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 88.05 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 88.02 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 88.02 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 87.99 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 87.84 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 87.82 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 87.79 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 87.72 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 87.52 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 87.48 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 87.43 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 87.43 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 87.43 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 87.31 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 87.27 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 87.21 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 87.21 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 87.19 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 87.16 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 86.81 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 86.74 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 86.69 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 86.65 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 86.62 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 86.59 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 86.48 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 86.47 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 86.38 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 86.27 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 86.2 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 86.16 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 86.15 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 86.11 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 86.05 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 85.96 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 85.87 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 85.73 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 85.72 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 85.67 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 85.64 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 85.59 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 85.55 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 85.55 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 85.54 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 85.49 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 85.43 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 85.35 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 85.2 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 85.13 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 85.1 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 85.1 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 85.08 |
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-55 Score=439.12 Aligned_cols=390 Identities=18% Similarity=0.302 Sum_probs=311.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccc----ccccc--chhhhHHHHHhc-CcEEEc-c
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTK----LLSDI--TVEETDANKFEG-LCTVIV-D 74 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~-~i~~~~-~ 74 (454)
.+|||||||+||++||..|++++++.+|+|||+++...+ ..+.++. ..... .+.......+.+ +++++. .
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 78 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSF--ANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYH 78 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSB--CGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETE
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCC--CcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCC
Confidence 379999999999999999999977789999999886543 2222111 11111 111122334445 999865 4
Q ss_pred eEEEEeCcccEEEeccC-----cEEEecEEEEecCCCCCCCCCC-CceeeeeccchHHHHHHHhh--cCCeEEEEcCchh
Q psy1545 75 TVAAIDPRVNCVITEKQ-----NRIKYKTLCICTGASPRKIWYS-PHVITIRDTDSVAVLQEKLK--SAKKIVVIGNGGI 146 (454)
Q Consensus 75 ~v~~i~~~~~~v~~~~g-----~~i~~d~lviAtG~~p~~~~~~-~~~~~~~~~~~~~~l~~~~~--~~~~vvVvG~G~~ 146 (454)
+|+.++...+.+.+..+ .++.||+||||||++|+.|+++ ++++.+++.+++..+.+.+. .+++++|||+|++
T Consensus 79 ~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~i 158 (437)
T 4eqs_A 79 EVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYV 158 (437)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCCCCCTTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHH
T ss_pred eEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCccccccccCceEEeeccHHHHHHHHHhhhccCCcEEEEECCccc
Confidence 89999999887765432 3689999999999999999988 77888888888888876543 4789999999999
Q ss_pred HHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccccccccc
Q psy1545 147 ATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHG 224 (454)
Q Consensus 147 g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (454)
|+|+|..+. |.+||++++.+++++. +|++..+.+.+.+.+
T Consensus 159 g~E~A~~l~~~g~~Vtlv~~~~~ll~~-~d~~~~~~~~~~l~~------------------------------------- 200 (437)
T 4eqs_A 159 SLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDK------------------------------------- 200 (437)
T ss_dssp HHHHHHHHHHHTCEEEEEESSSCCSTT-SCGGGGHHHHHHHHH-------------------------------------
T ss_pred hhhhHHHHHhcCCcceeeeeecccccc-ccchhHHHHHHHhhc-------------------------------------
Confidence 999999986 9999999999999885 799999988888865
Q ss_pred CccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEecccccccc
Q psy1545 225 SSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSI 304 (454)
Q Consensus 225 ~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~ 304 (454)
+||++++++.|++++... +.+++|+++++|.|++|+|++||++ +++..|++++++|+|.||+++||++
T Consensus 201 ----~gV~i~~~~~v~~~~~~~-------v~~~~g~~~~~D~vl~a~G~~Pn~~-~~~~~gl~~~~~G~I~vd~~~~Ts~ 268 (437)
T 4eqs_A 201 ----REIPYRLNEEINAINGNE-------ITFKSGKVEHYDMIIEGVGTHPNSK-FIESSNIKLDRKGFIPVNDKFETNV 268 (437)
T ss_dssp ----TTCCEEESCCEEEEETTE-------EEETTSCEEECSEEEECCCEEESCG-GGTTSSCCCCTTSCEECCTTCBCSS
T ss_pred ----cceEEEeccEEEEecCCe-------eeecCCeEEeeeeEEEEeceecCcH-HHHhhhhhhccCCcEecCCCccCCC
Confidence 899999999999987653 7889999999999999999999998 9999999999999999999999999
Q ss_pred CceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcC
Q psy1545 305 SNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTL 384 (454)
Q Consensus 305 ~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~ 384 (454)
|||||+|||++.+....+.+..+++++.|.+||+++|+||++..... ++.........+++++++++|+++.+++
T Consensus 269 p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~~~~-----~~~~~~~~~~~~~~p~ia~vGlte~~a~ 343 (437)
T 4eqs_A 269 PNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIE-----FKGFLGNNIVKFFDYTFASVGVKPNELK 343 (437)
T ss_dssp TTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSCTTCC-----CCCBCCCEEEEETTEEEEEEESCGGGGG
T ss_pred CCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHcCCCCcc-----cccceeEEeeeeccceEEEeeCCHHHHH
Confidence 99999999999876666666667899999999999999999853211 1111122234456679999999998887
Q ss_pred CCCceEEEe---------ecCCccEEEEEE--ECCeEEEEEEEcCC---chHHHHHHHHhcCCCcchhhhhc--cCCCCC
Q psy1545 385 ENDYEILLR---------VTRGEEYIKLVM--KDGRMQGAVLIGET---EIEEMCENLILNQLDLTDIADDL--LNPNID 448 (454)
Q Consensus 385 ~~~~~~~~~---------~~~~~~~~k~~~--~~~~i~G~~~~g~~---~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~ 448 (454)
..+++...- .....+|+|+++ ++++|||+|++|++ +.++.++.+|++++|++||.+.. +||+|+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~yhP~~s 423 (437)
T 4eqs_A 344 QFDYKMVEVTQGAHANYYPGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAFAPPYS 423 (437)
T ss_dssp GSCEEEEEEEEESSCTTSSSCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTC
T ss_pred hCCceEEEEecCCchhhcCCCCcEEEEEEEECCCCEEEEEEEECcCCHHHHHHHHHHHHHcCCcHHHHhcCccccCCCCC
Confidence 666543211 113467999999 47999999999986 35789999999999999997754 478776
Q ss_pred C
Q psy1545 449 I 449 (454)
Q Consensus 449 ~ 449 (454)
-
T Consensus 424 ~ 424 (437)
T 4eqs_A 424 H 424 (437)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-54 Score=433.34 Aligned_cols=401 Identities=19% Similarity=0.221 Sum_probs=302.4
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccc-ccc-cccccc-cchhhhHHHHHhc-CcEEE-cce
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKT-VPV-TKLLSD-ITVEETDANKFEG-LCTVI-VDT 75 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~-~~~-~~~~~~-~~~~~~~~~~~~~-~i~~~-~~~ 75 (454)
|++||+|||||+||++||..|++.+++.+|+|||+++..++.... +.+ ...... .++.....+.+.+ +++++ ..+
T Consensus 1 M~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~ 80 (452)
T 3oc4_A 1 MSLKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNRE 80 (452)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCE
T ss_pred CCCCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCE
Confidence 778999999999999999999998888999999999876532211 111 111111 1111123344555 88886 569
Q ss_pred EEEEeCcccEEEec---cCcEEEecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHH
Q psy1545 76 VAAIDPRVNCVITE---KQNRIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIAT 148 (454)
Q Consensus 76 v~~i~~~~~~v~~~---~g~~i~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~ 148 (454)
|+.+++..+.+.+. ++..+.||+||||||++|+.|+++ ++++...+..+...+.+....+++++|||+|++|+
T Consensus 81 V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~ 160 (452)
T 3oc4_A 81 VVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGM 160 (452)
T ss_dssp EEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCCBTTTCTTEEEGGGCC----CCHHHHTCSEEEEECCSHHHH
T ss_pred EEEEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHH
Confidence 99999998887663 456899999999999999998887 45666666666666555555699999999999999
Q ss_pred HHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCc
Q psy1545 149 ELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSS 226 (454)
Q Consensus 149 e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 226 (454)
|+|..+. |.+|+++++.++++++.+++++.+.+.+.+.+
T Consensus 161 E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~--------------------------------------- 201 (452)
T 3oc4_A 161 EAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEK--------------------------------------- 201 (452)
T ss_dssp HHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHT---------------------------------------
T ss_pred HHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHH---------------------------------------
Confidence 9999986 99999999999999877888888888888755
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCc
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISN 306 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~ 306 (454)
.||++++++.|++++..++ .+.+.+++| ++++|.|++|+|++|+.+ +++.. +.++++|+|.||+++||+.|+
T Consensus 202 --~GV~i~~~~~v~~i~~~~~---~v~v~~~~g-~i~aD~Vv~A~G~~p~~~-~l~~~-~~~~~~g~i~vd~~~~t~~~~ 273 (452)
T 3oc4_A 202 --QAVIFHFEETVLGIEETAN---GIVLETSEQ-EISCDSGIFALNLHPQLA-YLDKK-IQRNLDQTIAVDAYLQTSVPN 273 (452)
T ss_dssp --TTEEEEETCCEEEEEECSS---CEEEEESSC-EEEESEEEECSCCBCCCS-SCCTT-SCBCTTSCBCCCTTCBCSSTT
T ss_pred --cCCEEEeCCEEEEEEccCC---eEEEEECCC-EEEeCEEEECcCCCCChH-HHHhh-hccCCCCCEEECcCccCCCCC
Confidence 8999999999999985442 346777777 899999999999999998 77654 788889999999999999999
Q ss_pred eeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC
Q psy1545 307 VYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN 386 (454)
Q Consensus 307 Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ 386 (454)
|||+|||+..+....+.+...++++.|..||++||+||++.... ++....+.++..|+.+++++|+++.++...
T Consensus 274 IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~------~~~~~~~~~~~~~~~~~a~vG~te~~a~~~ 347 (452)
T 3oc4_A 274 VFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKTHR------FIGSLRTMGTKVGDYYLASTGLTETEGLFF 347 (452)
T ss_dssp EEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSSSCCCC------CCCCCCCEEEEETTEEEEEEECCSGGGGGS
T ss_pred EEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhcCCCcc------CCCccccEEEEEcCeeEEEecCCHHHHHHC
Confidence 99999999865444444444578999999999999999975321 211122335566788999999999887644
Q ss_pred CceE--EE-ee------cCCccEEEEEEE--CCeEEEEEEEcCC---chHHHHHHHHhcCCCcchhhhhccCCCCCCCCC
Q psy1545 387 DYEI--LL-RV------TRGEEYIKLVMK--DGRMQGAVLIGET---EIEEMCENLILNQLDLTDIADDLLNPNIDIDDY 452 (454)
Q Consensus 387 ~~~~--~~-~~------~~~~~~~k~~~~--~~~i~G~~~~g~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 452 (454)
+++. .. .. ....+|+|++++ +++|+|+|++|+. +.++.++.+|++++|++|+.+..+.++.++++-
T Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~ 427 (452)
T 3oc4_A 348 PQTLASIIVRQPAPPLQHGTEILGKLIYDKVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQPSLTNI 427 (452)
T ss_dssp SSCEEEEEEEEECTTTTCSCEEEEEEEEETTTCBEEEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHTCCCCCCTTTSCS
T ss_pred CCceEEEEEecCCccCCCCCeEEEEEEEECCCCEEEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHhhHhccCCCCCCc
Confidence 3322 11 11 135689999994 6999999999983 468999999999999999976633333444454
Q ss_pred CC
Q psy1545 453 FD 454 (454)
Q Consensus 453 ~~ 454 (454)
||
T Consensus 428 ~~ 429 (452)
T 3oc4_A 428 YD 429 (452)
T ss_dssp SC
T ss_pred hh
Confidence 43
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-54 Score=430.84 Aligned_cols=401 Identities=20% Similarity=0.267 Sum_probs=305.7
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc-cccccccccc-ccchhhhHHHHH-hc-CcEEEcc-e
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT-KTVPVTKLLS-DITVEETDANKF-EG-LCTVIVD-T 75 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~-~~-~i~~~~~-~ 75 (454)
.++||+|||||+||+++|..|++.+++.+|+|||+++..++.. ..+.+..... ..++.....+.+ .+ +++++.+ +
T Consensus 2 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~ 81 (449)
T 3kd9_A 2 SLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAE 81 (449)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCE
T ss_pred CcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCE
Confidence 0479999999999999999999987789999999998765322 1111111111 111111222334 23 9999877 9
Q ss_pred EEEEeCcccEEEeccC-cEEEecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhh--cCCeEEEEcCchhHH
Q psy1545 76 VAAIDPRVNCVITEKQ-NRIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLK--SAKKIVVIGNGGIAT 148 (454)
Q Consensus 76 v~~i~~~~~~v~~~~g-~~i~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~--~~~~vvVvG~G~~g~ 148 (454)
|+.++...+.+.+.++ ..+.||+||+|||++|+.|+++ ++++...+.+++..+.+.+. .+++++|||+|++|+
T Consensus 82 v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~ 161 (449)
T 3kd9_A 82 VIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGI 161 (449)
T ss_dssp EEEECSSEEEEECSSSEEEEECSEEEECCCEEECCCSCBTTTSTTEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHH
T ss_pred EEEEecCCCEEEECCceEEEEcCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHH
Confidence 9999998888888776 4899999999999999888876 45677778888888887765 678999999999999
Q ss_pred HHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCc
Q psy1545 149 ELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSS 226 (454)
Q Consensus 149 e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 226 (454)
|+|..+. |.+|+++++.+++++..+++++.+.+.+.+.+
T Consensus 162 E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~--------------------------------------- 202 (449)
T 3kd9_A 162 EMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKK--------------------------------------- 202 (449)
T ss_dssp HHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTT---------------------------------------
T ss_pred HHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHh---------------------------------------
Confidence 9999986 99999999999999876788888888777754
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCc
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISN 306 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~ 306 (454)
. |++++++.+.+++.++ .+...+.+++++++|.|++|+|++|+.+ +++..|++++++|+|.||+++||+.|+
T Consensus 203 --~-v~i~~~~~v~~i~~~~----~v~~v~~~g~~i~~D~Vv~a~G~~p~~~-l~~~~gl~~~~~G~i~vd~~~~t~~~~ 274 (449)
T 3kd9_A 203 --H-VNLRLQEITMKIEGEE----RVEKVVTDAGEYKAELVILATGIKPNIE-LAKQLGVRIGETGAIWTNEKMQTSVEN 274 (449)
T ss_dssp --T-SEEEESCCEEEEECSS----SCCEEEETTEEEECSEEEECSCEEECCH-HHHHTTCCBCTTSSBCCCTTCBCSSTT
T ss_pred --C-cEEEeCCeEEEEeccC----cEEEEEeCCCEEECCEEEEeeCCccCHH-HHHhCCccCCCCCCEEECCCCccCCCC
Confidence 7 9999999999998754 2333456778899999999999999998 888888999889999999999999999
Q ss_pred eeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC
Q psy1545 307 VYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN 386 (454)
Q Consensus 307 Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ 386 (454)
|||+|||+..+....+.+..+++++.|..||+++|+||++... .++....+.+..+++++++++|+++.++...
T Consensus 275 IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~g~~~------~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~ 348 (449)
T 3kd9_A 275 VYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKEL------HFPGVLGTAVTKFMDVEIGKTGLTEMEALKE 348 (449)
T ss_dssp EEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCC------CCCCBCCCEEEEETTEEEEEEECCHHHHHHT
T ss_pred EEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhcCCCc------cCCCcccceEEEEcCcEEEEecCCHHHHHHC
Confidence 9999999976543333333467899999999999999997532 1222223345677788999999998776533
Q ss_pred CceEEE---e-------e-cCCccEEEEEEE--CCeEEEEEEEcCC--chHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 387 DYEILL---R-------V-TRGEEYIKLVMK--DGRMQGAVLIGET--EIEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 387 ~~~~~~---~-------~-~~~~~~~k~~~~--~~~i~G~~~~g~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
+++... . . ....+|+|++++ +++|+|+|++|+. +.++.++.+|++++|++|+.+..+..+.++++
T Consensus 349 g~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~ 428 (449)
T 3kd9_A 349 GYDVRTAFIKASTRPHYYPGGREIWLKGVVDNETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAFFTDLAYAPPFAP 428 (449)
T ss_dssp TCCEEEEEEEEESSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTCCCCCBTTTBC
T ss_pred CCceEEEEEecCCccccCCCCceEEEEEEEECCCCEEEEEEEEChHHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCC
Confidence 332211 1 0 234689999994 5999999999998 46789999999999999998765443344445
Q ss_pred CCC
Q psy1545 452 YFD 454 (454)
Q Consensus 452 ~~~ 454 (454)
-||
T Consensus 429 ~~~ 431 (449)
T 3kd9_A 429 VWD 431 (449)
T ss_dssp SSC
T ss_pred chh
Confidence 444
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-52 Score=415.98 Aligned_cols=391 Identities=20% Similarity=0.298 Sum_probs=320.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-----cccchhhhHHHHHhc-CcEEEcc-
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-----SDITVEETDANKFEG-LCTVIVD- 74 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~i~~~~~- 74 (454)
++||||||||+||++||..|++.++..+|+|||+++..++ .++.++..+ ....+......++.+ +++++.+
T Consensus 9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 86 (415)
T 3lxd_A 9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPY--ERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGA 86 (415)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCB--CSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETC
T ss_pred CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCc--CcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCC
Confidence 4699999999999999999999955456999999987653 333333211 112222333455555 9999877
Q ss_pred eEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhhc-CCeEEEEcCchhHHH
Q psy1545 75 TVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLKS-AKKIVVIGNGGIATE 149 (454)
Q Consensus 75 ~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~~-~~~vvVvG~G~~g~e 149 (454)
+++.+++..+.|.+.+++.+.||+||+|||++|+.|+++ ++++.+++.+++..+.+.+.. +++++|||+|++|+|
T Consensus 87 ~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e 166 (415)
T 3lxd_A 87 EVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLE 166 (415)
T ss_dssp CEEEEETTTTEEEETTSCEEEEEEEEECCCEECCCCBTTSSCCBTEECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHH
T ss_pred EEEEEECCCCEEEECCCCEEEeeEEEEccCCccCCCCCCCccccCEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHH
Confidence 999999999999998899999999999999999998877 457777788899888887777 999999999999999
Q ss_pred HHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCcc
Q psy1545 150 LVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSR 227 (454)
Q Consensus 150 ~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 227 (454)
+|..+. |.+|+++++.++++++.+++++.+.+.+.+++
T Consensus 167 ~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~---------------------------------------- 206 (415)
T 3lxd_A 167 AAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRA---------------------------------------- 206 (415)
T ss_dssp HHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHH----------------------------------------
T ss_pred HHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHh----------------------------------------
Confidence 999986 99999999999999877788888888777755
Q ss_pred CCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCce
Q psy1545 228 DTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNV 307 (454)
Q Consensus 228 ~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~I 307 (454)
.||++++++.|++++.++ +....+.+++|+++++|.||+|+|++|+.+ +++..++.++ + +|.||+++||+.|+|
T Consensus 207 -~GV~i~~~~~v~~i~~~~--~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~-l~~~~gl~~~-~-gi~vd~~~~t~~~~i 280 (415)
T 3lxd_A 207 -HGVDLRTGAAMDCIEGDG--TKVTGVRMQDGSVIPADIVIVGIGIVPCVG-ALISAGASGG-N-GVDVDEFCRTSLTDV 280 (415)
T ss_dssp -TTCEEEETCCEEEEEESS--SBEEEEEESSSCEEECSEEEECSCCEESCH-HHHHTTCCCS-S-SEECCTTCBCSSTTE
T ss_pred -CCCEEEECCEEEEEEecC--CcEEEEEeCCCCEEEcCEEEECCCCccChH-HHHhCCCCcC-C-CEEECCCCCcCCCCE
Confidence 899999999999998764 234578899999999999999999999998 8888888875 4 499999999999999
Q ss_pred eecCcccccCCccc-cchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC
Q psy1545 308 YAAGDVCTPSWDLA-KQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN 386 (454)
Q Consensus 308 ya~GD~~~~~~~~~-~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ 386 (454)
||+|||+..+.... +.+....+|+.|..||++||+||++... .+...|+ +|+.+|+.++..+|......
T Consensus 281 yA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~---~~~~~p~----~~~~~~~~~~~~~G~~~~~~--- 350 (415)
T 3lxd_A 281 YAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAPV---PYKATPW----FWSNQYDLKLQTVGLSTGHD--- 350 (415)
T ss_dssp EECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTCCC---CCCCCCE----EEEEETTEEEEEEECCTTCS---
T ss_pred EEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCCCC---CCCCCCe----eEeeeCCcEEEEEeCCCCCC---
Confidence 99999998765443 4444566899999999999999998532 2222222 46789999999999975321
Q ss_pred CceEEEeecC-CccEEEEEEECCeEEEEEEEcCCchHHHHHHHHhcCCCcchhhhhccCCCCCCCCCCC
Q psy1545 387 DYEILLRVTR-GEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDYFD 454 (454)
Q Consensus 387 ~~~~~~~~~~-~~~~~k~~~~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (454)
+.+++.++ ...|.++++++++|+|+.++|.......++.+|.++..++. +.|.+|+++|++.+|
T Consensus 351 --~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~l~~~~~ 415 (415)
T 3lxd_A 351 --NAVLRGDPATRSFSVVYLKGGKVVALDCVNMVKDYVQGKKLVEARAQIAP--EQLADAGVPLKEMLA 415 (415)
T ss_dssp --EEEEEEEGGGTEEEEEEEETTEEEEEEEESCHHHHHHHHHHHHHTCCCCH--HHHTCTTSCGGGGCC
T ss_pred --EEEEEecCCCCeEEEEEEECCEEEEEEEECChHHHHHHHHHHHCCCCCCH--HHhcCCCCChHHhhC
Confidence 33444333 45799999999999999999999999999999999999986 789999999998775
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-53 Score=418.81 Aligned_cols=388 Identities=16% Similarity=0.256 Sum_probs=317.0
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-----cccchhhhHHHHHhc-CcEEEcc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-----SDITVEETDANKFEG-LCTVIVD 74 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~i~~~~~ 74 (454)
|+++|+|||||+||++||..|++.++..+|+|||+++..++ +++.++..+ ....+ ....+++.+ +++++.+
T Consensus 1 M~~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y--~~~~l~~~~~~g~~~~~~~-~~~~~~~~~~~i~~~~~ 77 (410)
T 3ef6_A 1 MATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPY--DRPSLSKAVLDGSLERPPI-LAEADWYGEARIDMLTG 77 (410)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSB--CSGGGGTHHHHTSSSSCCB-SSCTTHHHHTTCEEEES
T ss_pred CCCCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCc--CCccccHHHhCCCCCHHHh-cCCHHHHHHCCCEEEeC
Confidence 77899999999999999999999955556999999987653 333332211 11112 222344555 9999887
Q ss_pred -eEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHH
Q psy1545 75 -TVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATE 149 (454)
Q Consensus 75 -~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e 149 (454)
+++.+++..+.|.+.+++++.||+||+|||++|+.|+++ ++++.+++.+++..+.+.+..+++++|||+|++|+|
T Consensus 78 ~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~ipG~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E 157 (410)
T 3ef6_A 78 PEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCE 157 (410)
T ss_dssp CCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTTTSTTEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHH
T ss_pred CEEEEEECCCCEEEECCCCEEECCEEEEccCCcccCCCCCCccccceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHH
Confidence 999999999999998899999999999999999998877 567778888999998887778999999999999999
Q ss_pred HHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCcc
Q psy1545 150 LVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSR 227 (454)
Q Consensus 150 ~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 227 (454)
+|..+. |.+|+++++.++++++.+++++.+.+.+.+.+
T Consensus 158 ~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~---------------------------------------- 197 (410)
T 3ef6_A 158 VATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTE---------------------------------------- 197 (410)
T ss_dssp HHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHH----------------------------------------
T ss_pred HHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHH----------------------------------------
Confidence 999986 99999999999998877788888888777755
Q ss_pred CCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCce
Q psy1545 228 DTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNV 307 (454)
Q Consensus 228 ~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~I 307 (454)
.||++++++.|++++.++ ....+.+++|+++++|.||+|+|++|+.+ +++..|++++ ++|.||+++||+.|+|
T Consensus 198 -~GV~i~~~~~v~~i~~~~---~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~-l~~~~gl~~~--~gi~vd~~~~t~~~~I 270 (410)
T 3ef6_A 198 -LGVQVELGTGVVGFSGEG---QLEQVMASDGRSFVADSALICVGAEPADQ-LARQAGLACD--RGVIVDHCGATLAKGV 270 (410)
T ss_dssp -HTCEEECSCCEEEEECSS---SCCEEEETTSCEEECSEEEECSCEEECCH-HHHHTTCCBS--SSEECCTTSBCSSTTE
T ss_pred -CCCEEEeCCEEEEEeccC---cEEEEEECCCCEEEcCEEEEeeCCeecHH-HHHhCCCccC--CeEEEccCeeECCCCE
Confidence 899999999999998764 25678999999999999999999999998 8888888875 4599999999999999
Q ss_pred eecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCC
Q psy1545 308 YAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEND 387 (454)
Q Consensus 308 ya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~ 387 (454)
||+|||+..+... +.+...++|+.|..||++||+||++... .+...| ..++.++|.++..+|.++...
T Consensus 271 yA~GD~a~~~~~~-g~~~~~~~~~~A~~qg~~aa~~i~g~~~---~~~~~p----~~~~~~~~~~~~~~G~~~~~~---- 338 (410)
T 3ef6_A 271 FAVGDVASWPLRA-GGRRSLETYMNAQRQAAAVAAAILGKNV---SAPQLP----VSWTEIAGHRMQMAGDIEGPG---- 338 (410)
T ss_dssp EECGGGEEEEBTT-SSEECCCCHHHHHHHHHHHHHHHTTCCC---CCCBCC----EEEEEETTEEEEEESCSSSSS----
T ss_pred EEEEcceeccCCC-CCeeeechHHHHHHHHHHHHHHHcCCCC---CCCCCC----eeEEEECCceEEEEcCCCCCC----
Confidence 9999999865433 3333456799999999999999998532 222222 246788999999999976432
Q ss_pred ceEEEeecC-CccEEEEEEECCeEEEEEEEcCCchHHHHHHHHhcCCCcchhhhhccCCCCCCCCCC
Q psy1545 388 YEILLRVTR-GEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDYF 453 (454)
Q Consensus 388 ~~~~~~~~~-~~~~~k~~~~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 453 (454)
+.+++.++ ...|.++++++++|+|++++|.......+..+|.++..++. +.|.+|++++++.+
T Consensus 339 -~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~~l~~~~ 402 (410)
T 3ef6_A 339 -DFVSRGMPGSGAALLFRLQERRIQAVVAVDAPRDFALATRLVEARAAIEP--ARLADLSNSMRDFV 402 (410)
T ss_dssp -EEEEESCTTSSSEEEEEEETTEEEEEEEESCHHHHHHHHHHHHHTCBCCH--HHHHCTTSCGGGTC
T ss_pred -EEEEEeeCCCCeEEEEEEECCEEEEEEEECChHHHHHHHHHHhCCCCCCH--HHhcCCCCCHHHHh
Confidence 33444333 45689988899999999999999999999999999999988 78999999998764
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-53 Score=425.31 Aligned_cols=397 Identities=18% Similarity=0.216 Sum_probs=293.9
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc-ccc-ccccccc-cch------hhhHHHHHhc--Cc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK-TVP-VTKLLSD-ITV------EETDANKFEG--LC 69 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~-~~~-~~~~~~~-~~~------~~~~~~~~~~--~i 69 (454)
+++||+|||||+||++||..|++.+++.+|+|||+++.+++... .+. +...... ..+ .....+.+.+ ++
T Consensus 2 ~~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi 81 (472)
T 3iwa_A 2 SLKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDV 81 (472)
T ss_dssp --CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------C
T ss_pred CCCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCc
Confidence 04799999999999999999999888999999999987643211 111 1111111 111 1223334443 88
Q ss_pred EEE-cceEEEEeCcccEEEecc---Cc--EEEecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhh--cCCe
Q psy1545 70 TVI-VDTVAAIDPRVNCVITEK---QN--RIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLK--SAKK 137 (454)
Q Consensus 70 ~~~-~~~v~~i~~~~~~v~~~~---g~--~i~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~--~~~~ 137 (454)
+++ ..+|+.+++..+.+.+.+ |. .+.||+||+|||++|+.|+++ ++++.+.+..++..+.+.+. .+++
T Consensus 82 ~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~l~~~~~~~ 161 (472)
T 3iwa_A 82 EALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSK 161 (472)
T ss_dssp EEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSCTTTTSBTEEECCSHHHHHHHHHHCCTTSCSE
T ss_pred EEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCCCE
Confidence 886 569999999988887765 65 799999999999999988877 35666777777877776553 4899
Q ss_pred EEEEcCchhHHHHHHHhc---CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCC
Q psy1545 138 IVVIGNGGIATELVHELS---NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGP 214 (454)
Q Consensus 138 vvVvG~G~~g~e~a~~l~---g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 214 (454)
++|||+|.+|+|+|..+. |.+|+++++.++++++.+++++.+.+.+.+.+
T Consensus 162 vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~--------------------------- 214 (472)
T 3iwa_A 162 AVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEK--------------------------- 214 (472)
T ss_dssp EEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHH---------------------------
T ss_pred EEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHh---------------------------
Confidence 999999999999999884 89999999999998866788888888777755
Q ss_pred ccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCce
Q psy1545 215 DWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGI 294 (454)
Q Consensus 215 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i 294 (454)
.||++++++.|++++..++ .+.+.+++|+++++|.||+|+|++|+.+ +++..|++++++|+|
T Consensus 215 --------------~GV~i~~~~~v~~i~~~~~---~v~v~~~~g~~i~aD~Vv~a~G~~p~~~-l~~~~gl~~~~~g~i 276 (472)
T 3iwa_A 215 --------------NDVVVHTGEKVVRLEGENG---KVARVITDKRTLDADLVILAAGVSPNTQ-LARDAGLELDPRGAI 276 (472)
T ss_dssp --------------TTCEEECSCCEEEEEESSS---BEEEEEESSCEEECSEEEECSCEEECCH-HHHHHTCCBCTTCCE
T ss_pred --------------cCCEEEeCCEEEEEEccCC---eEEEEEeCCCEEEcCEEEECCCCCcCHH-HHHhCCccCCCCCCE
Confidence 8999999999999987542 4568888999999999999999999998 777778888889999
Q ss_pred EeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEE
Q psy1545 295 GVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVI 374 (454)
Q Consensus 295 ~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (454)
.||+++||+.|+|||+|||+..+....+.+..+++++.|..||++||+||++... .++..+.+.+..+++++++
T Consensus 277 ~vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~------~~~~~~~~~~~~~~~~~~a 350 (472)
T 3iwa_A 277 IVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGDA------TFPGAVGSWAVKLFEGSAS 350 (472)
T ss_dssp ECCTTCBCSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHTTCCC------CCCCBCCCEEEECSSCEEE
T ss_pred EECCCcccCCCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhcCCCc------cCCCCCcceEEEECCceeE
Confidence 9999999999999999999976544434444567899999999999999997532 1222223344567788999
Q ss_pred EeecccCCcCCCC--ceEEE-e-------e-cCCccEEEEEE--ECCeEEEEEEEcC--C---chHHHHHHHHhcCCCcc
Q psy1545 375 LLGLFNGQTLEND--YEILL-R-------V-TRGEEYIKLVM--KDGRMQGAVLIGE--T---EIEEMCENLILNQLDLT 436 (454)
Q Consensus 375 ~vG~~~~~~~~~~--~~~~~-~-------~-~~~~~~~k~~~--~~~~i~G~~~~g~--~---~~~~~~~~~i~~~~~~~ 436 (454)
++|+++.++...+ +.... . . ....+|+|+++ ++++|+|+|++|+ . +.++.++.+|++++|++
T Consensus 351 ~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~~t~~ 430 (472)
T 3iwa_A 351 GAGLTVEGALREGYDAVNVHVEQFDRAHFYPEKTIMTLQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVE 430 (472)
T ss_dssp EEECCHHHHHHTTCCEEEEEEEC-----------CEEEEEEEETTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTCCBHH
T ss_pred EEECCHHHHHHcCCceEEEEEecCCccCccCCCceEEEEEEEECCCCEEEEEEEECCCcccHHHHHHHHHHHHHcCCCHH
Confidence 9999997754332 22111 0 1 23468999999 4899999999999 2 46889999999999999
Q ss_pred hhhhhcc--CCCCC
Q psy1545 437 DIADDLL--NPNID 448 (454)
Q Consensus 437 ~~~~~~~--~~~~~ 448 (454)
++.+..+ +|+++
T Consensus 431 ~l~~~~~~~~P~~~ 444 (472)
T 3iwa_A 431 DISNAEVVYSPPFA 444 (472)
T ss_dssp HHHTCCCC------
T ss_pred HHhcccccCCCCCC
Confidence 9976653 36554
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=414.64 Aligned_cols=394 Identities=18% Similarity=0.249 Sum_probs=299.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc-ccc-cccccc---ccchhhhHHHHHhc-CcEEEcc-e
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK-TVP-VTKLLS---DITVEETDANKFEG-LCTVIVD-T 75 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~-~~~-~~~~~~---~~~~~~~~~~~~~~-~i~~~~~-~ 75 (454)
+||+|||||+||+++|..|++.+++.+|+|||+++..++... .+. ...... ...+.....+.+.+ +++++.+ +
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 80 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQ 80 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCE
Confidence 589999999999999999999877899999999986543211 110 011111 11111122344445 8998654 7
Q ss_pred EEEEeCcccEEEecc-----CcEEEecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhhcCCeEEEEcCchh
Q psy1545 76 VAAIDPRVNCVITEK-----QNRIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGI 146 (454)
Q Consensus 76 v~~i~~~~~~v~~~~-----g~~i~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~ 146 (454)
+..++.+.+.+.+.+ +..++||+||+|||++|+.|+++ ++++.+.+.++...+.+....+++++|||+|++
T Consensus 81 v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~ 160 (452)
T 2cdu_A 81 VTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYI 160 (452)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTSTTEEECSSHHHHHHHHHHGGGCSEEEEECCSHH
T ss_pred EEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCCCCCCCCCEEEeCcHHHHHHHHHHhccCCeEEEECcCHH
Confidence 999998888887754 45799999999999999988876 457777777777777777778999999999999
Q ss_pred HHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccccccccc
Q psy1545 147 ATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHG 224 (454)
Q Consensus 147 g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (454)
|+|+|..+. |.+|+++++.++++++.+++++.+.+.+.+.+
T Consensus 161 g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~------------------------------------- 203 (452)
T 2cdu_A 161 GAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEA------------------------------------- 203 (452)
T ss_dssp HHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHH-------------------------------------
T ss_pred HHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHH-------------------------------------
Confidence 999999986 99999999999999866888888888777755
Q ss_pred CccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEecccccccc
Q psy1545 225 SSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSI 304 (454)
Q Consensus 225 ~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~ 304 (454)
.||++++++.|++++..++ ....+.+ +|+++++|.|++|+|++|+.+ +++.. ++++++|+|.||+++||+.
T Consensus 204 ----~Gv~i~~~~~v~~i~~~~~--~v~~v~~-~g~~i~~D~vv~a~G~~p~~~-ll~~~-l~~~~~G~i~Vd~~~~t~~ 274 (452)
T 2cdu_A 204 ----HGVNLVLGSKVAAFEEVDD--EIITKTL-DGKEIKSDIAILCIGFRPNTE-LLKGK-VAMLDNGAIITDEYMHSSN 274 (452)
T ss_dssp ----TTCEEEESSCEEEEEEETT--EEEEEET-TSCEEEESEEEECCCEEECCG-GGTTT-SCBCTTSCBCCCTTSBCSS
T ss_pred ----CCCEEEcCCeeEEEEcCCC--eEEEEEe-CCCEEECCEEEECcCCCCCHH-HHHHh-hhcCCCCCEEECCCcCcCC
Confidence 8999999999999986331 1223444 778899999999999999998 88777 8888889999999999999
Q ss_pred CceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcC
Q psy1545 305 SNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTL 384 (454)
Q Consensus 305 ~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~ 384 (454)
|+|||+|||+..+....+.+..+++++.|..||++||+||++... .+.......+..+|+++++.+|+++.++.
T Consensus 275 ~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~------~~~~~~~~~~~~~~~~~~~~vG~~~~~a~ 348 (452)
T 2cdu_A 275 RDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDKV------KDMGTQSSSGLKLYGRTYVSTGINTALAK 348 (452)
T ss_dssp TTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSCCC------CCCCBCCCEEEEETTEEEEEEECCHHHHH
T ss_pred CCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCCCC------cCCCccceEEEEECCeeeEeecCCHHHHH
Confidence 999999999986433333333457899999999999999997421 11111223356778889999999987654
Q ss_pred CCC--ceEE-Eee--------cCCccEEEEEE--ECCeEEEEEEEcC-C--chHHHHHHHHhcCCCcchhhhh--ccCCC
Q psy1545 385 END--YEIL-LRV--------TRGEEYIKLVM--KDGRMQGAVLIGE-T--EIEEMCENLILNQLDLTDIADD--LLNPN 446 (454)
Q Consensus 385 ~~~--~~~~-~~~--------~~~~~~~k~~~--~~~~i~G~~~~g~-~--~~~~~~~~~i~~~~~~~~~~~~--~~~~~ 446 (454)
..+ +... +.. ....+|+|+++ ++++|+|+|++|+ . +.++.++.+|++++|++++.+. ..||+
T Consensus 349 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~i~~~~~ai~~~~~~~~l~~~~~~~~Pt 428 (452)
T 2cdu_A 349 ANNLKVSEVIIADNYRPEFMLSTDEVLMSLVYDPKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAMVDMLFQPQ 428 (452)
T ss_dssp HTTCCCEEEEEEEESSCTTBSCCCEEEEEEEECTTTCBEEEEEEEESSCCHHHHHHHHHHHHTTCBHHHHHHSCCCCCTT
T ss_pred HcCCceEEEEEecCCccccCCCCceEEEEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhhhhccCCC
Confidence 322 2211 111 12357999999 4799999999999 4 2468899999999999999764 34665
Q ss_pred CC
Q psy1545 447 ID 448 (454)
Q Consensus 447 ~~ 448 (454)
++
T Consensus 429 ~~ 430 (452)
T 2cdu_A 429 FD 430 (452)
T ss_dssp TC
T ss_pred CC
Confidence 54
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-51 Score=407.45 Aligned_cols=389 Identities=21% Similarity=0.287 Sum_probs=317.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-----cccchhhhHHHHHhc-CcEEEcce
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-----SDITVEETDANKFEG-LCTVIVDT 75 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~i~~~~~~ 75 (454)
++||+|||||+||++||..|++.++..+|+|||+++..++ +++.++..+ ....+......++.+ +++++..+
T Consensus 1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y--~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 78 (404)
T 3fg2_P 1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPY--QRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELISDR 78 (404)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSB--CSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEECCC
T ss_pred CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCC--CCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEEEE
Confidence 3689999999999999999999954459999999986643 333333211 111222333455555 99998899
Q ss_pred EEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHH
Q psy1545 76 VAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELV 151 (454)
Q Consensus 76 v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a 151 (454)
++.+++..+.|.+.+++.+.||+||+|||++|+.|+++ ++++.+++.+++..+.+.+..+++++|||+|.+|+|+|
T Consensus 79 v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A 158 (404)
T 3fg2_P 79 MVSIDREGRKLLLASGTAIEYGHLVLATGARNRMLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFA 158 (404)
T ss_dssp EEEEETTTTEEEESSSCEEECSEEEECCCEEECCCCSTTTTSTTEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHH
T ss_pred EEEEECCCCEEEECCCCEEECCEEEEeeCCCccCCCCCCCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHH
Confidence 99999999999998999999999999999999988876 56777788888988888888899999999999999999
Q ss_pred HHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCC
Q psy1545 152 HELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDT 229 (454)
Q Consensus 152 ~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 229 (454)
..+. |.+|+++++.++++++.+++++.+.+.+.+.+ .
T Consensus 159 ~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~-----------------------------------------~ 197 (404)
T 3fg2_P 159 ATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSG-----------------------------------------A 197 (404)
T ss_dssp HHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHH-----------------------------------------T
T ss_pred HHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHh-----------------------------------------C
Confidence 9986 99999999999998877788888888777755 8
Q ss_pred ceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCceee
Q psy1545 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYA 309 (454)
Q Consensus 230 gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya 309 (454)
||++++++.|++++.++ +....+.+++|+++++|.||+|+|++|+.+ +++..++.++ +| |.||+++||+.|+|||
T Consensus 198 GV~i~~~~~v~~i~~~~--~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~-l~~~~gl~~~-~G-i~vd~~~~t~~~~iya 272 (404)
T 3fg2_P 198 GIRMHYGVRATEIAAEG--DRVTGVVLSDGNTLPCDLVVVGVGVIPNVE-IAAAAGLPTA-AG-IIVDQQLLTSDPHISA 272 (404)
T ss_dssp TCEEECSCCEEEEEEET--TEEEEEEETTSCEEECSEEEECCCEEECCH-HHHHTTCCBS-SS-EEECTTSBCSSTTEEE
T ss_pred CcEEEECCEEEEEEecC--CcEEEEEeCCCCEEEcCEEEECcCCccCHH-HHHhCCCCCC-CC-EEECCCcccCCCCEEE
Confidence 99999999999998754 234568899999999999999999999998 8888888875 44 9999999999999999
Q ss_pred cCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCce
Q psy1545 310 AGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE 389 (454)
Q Consensus 310 ~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~ 389 (454)
+|||+..+.+..+.+....+|+.|..||++||+||++... .+...| .+|+.+++.++..+|..... .+
T Consensus 273 ~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~---~~~~~p----~~~~~~~~~~~~~~G~~~~~-----~~ 340 (404)
T 3fg2_P 273 IGDCALFESVRFGETMRVESVQNATDQARCVAARLTGDAK---PYDGYP----WFWSDQGDDKLQIVGLTAGF-----DQ 340 (404)
T ss_dssp CGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTCCC---CCCCCC----EEEEEETTEEEEEEECCTTC-----CE
T ss_pred eecceeecCccCCceeeehHHHHHHHHHHHHHHHhCCCCC---CCCCCC----ceEeEECCcEEEEEeCCCCC-----CE
Confidence 9999987644444444456799999999999999998532 222222 24678999999999996532 13
Q ss_pred EEEeec-CCccEEEEEEECCeEEEEEEEcCCchHHHHHHHHhcCCCcchhhhhccCCCCCCCCC
Q psy1545 390 ILLRVT-RGEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDY 452 (454)
Q Consensus 390 ~~~~~~-~~~~~~k~~~~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 452 (454)
.+++.+ ....|.++++++++|+|+.++|.......+..+|.++..++. +.|.+|++++++.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~ 402 (404)
T 3fg2_P 341 VVIRGSVAERSFSAFCYKAGKLIGIESVNRAADHVFGRKILPLDKSVTP--EQAADLSFDLKKA 402 (404)
T ss_dssp EEEEEETTTTEEEEEEEETTEEEEEEEESCHHHHHHHHHHTTTTCCCCH--HHHHCTTSCHHHH
T ss_pred EEEEecCCCCcEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHcCCCCCH--HHhcCCCCChHHh
Confidence 344433 356799999999999999999999999999999999999986 7899999998764
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-53 Score=429.54 Aligned_cols=382 Identities=17% Similarity=0.189 Sum_probs=286.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC---------cccccccccccccc--------------------c
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG---------IVKAVTKTVPVTKL--------------------L 52 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~---------~~~~~~~~~~~~~~--------------------~ 52 (454)
+||++|||||+||++||.+++++ |.+|+|||+.. ..+.|.++.+.+.. +
T Consensus 42 dYDviVIG~GpaG~~aA~~aa~~--G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi 119 (542)
T 4b1b_A 42 DYDYVVIGGGPGGMASAKEAAAH--GARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGW 119 (542)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTT--TCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTE
T ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCc
Confidence 38999999999999999999999 99999999643 45555554332210 0
Q ss_pred ----cccchhh--------------hHHHHHhc-CcEEEcceEEEEeCcccEEEec----cCcEEEecEEEEecCCCCCC
Q psy1545 53 ----SDITVEE--------------TDANKFEG-LCTVIVDTVAAIDPRVNCVITE----KQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 53 ----~~~~~~~--------------~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~----~g~~i~~d~lviAtG~~p~~ 109 (454)
...++.. .....+.+ +|+++.+...+++++...|... +++.+++|++|||||++|+.
T Consensus 120 ~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P~~ 199 (542)
T 4b1b_A 120 KFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPHI 199 (542)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEECC
T ss_pred ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCCCC
Confidence 0111110 11122334 8999999999999887666543 23579999999999999999
Q ss_pred CCCC-CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhh
Q psy1545 110 IWYS-PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSIN 186 (454)
Q Consensus 110 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~ 186 (454)
|+.. ..-..+.++++++.+.+. |++++|||||++|+|+|..++ |++||++++ +++++. +|+++...+.+.+.
T Consensus 200 P~~~~~~~~~~~ts~~~l~l~~l---P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~-~~~L~~-~D~ei~~~l~~~l~ 274 (542)
T 4b1b_A 200 PDDVEGAKELSITSDDIFSLKKD---PGKTLVVGASYVALECSGFLNSLGYDVTVAVR-SIVLRG-FDQQCAVKVKLYME 274 (542)
T ss_dssp CSSSBTHHHHCBCHHHHTTCSSC---CCSEEEECCSHHHHHHHHHHHHHTCCEEEEES-SCSSTT-SCHHHHHHHHHHHH
T ss_pred CCcccCCCccccCchhhhccccC---CceEEEECCCHHHHHHHHHHHhcCCeEEEecc-cccccc-cchhHHHHHHHHHH
Confidence 8765 222223466777766543 899999999999999999997 999999987 456664 79999999988886
Q ss_pred ccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCE
Q psy1545 187 KTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDI 266 (454)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~ 266 (454)
+ .||++++++.+.+++..++ .+.+.+.++.++++|.
T Consensus 275 ~-----------------------------------------~gi~~~~~~~v~~~~~~~~---~~~v~~~~~~~~~~D~ 310 (542)
T 4b1b_A 275 E-----------------------------------------QGVMFKNGILPKKLTKMDD---KILVEFSDKTSELYDT 310 (542)
T ss_dssp H-----------------------------------------TTCEEEETCCEEEEEEETT---EEEEEETTSCEEEESE
T ss_pred h-----------------------------------------hcceeecceEEEEEEecCC---eEEEEEcCCCeEEEEE
Confidence 6 8999999999999988663 5778888888999999
Q ss_pred EEEeeccCcCcccccC--CCCceecCCCc-eEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhh
Q psy1545 267 VVSAIGVVPNSNIQVH--GTPFELAPDCG-IGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKC 343 (454)
Q Consensus 267 vi~a~G~~p~~~~~~~--~~~l~~~~~g~-i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~ 343 (454)
|++|+|++||++ .+. ..++.++.+++ +.+|+++||++|+|||+|||++.. +.+++.|..||+++++|
T Consensus 311 vLvAvGR~Pnt~-~L~le~~gv~~~~~~~~i~vd~~~~Ts~p~IyAiGDv~~~~---------p~La~~A~~eg~~aa~~ 380 (542)
T 4b1b_A 311 VLYAIGRKGDID-GLNLESLNMNVNKSNNKIIADHLSCTNIPSIFAVGDVAENV---------PELAPVAIKAGEILARR 380 (542)
T ss_dssp EEECSCEEESCG-GGCGGGTTCCEETTTTEECCCTTSBCSSTTEEECTTSBTTC---------CCCHHHHHHHHHHHHHH
T ss_pred EEEcccccCCcc-ccCcccceeeecccCceEeccccccccCCCeEEeccccCCc---------hhHHHHHHHHHHHHHHH
Confidence 999999999998 554 44677776665 578899999999999999998642 36889999999999999
Q ss_pred hcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC----CceEEE-----------------e--------e
Q psy1545 344 MVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN----DYEILL-----------------R--------V 394 (454)
Q Consensus 344 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~----~~~~~~-----------------~--------~ 394 (454)
|++.......+..+|..+|+.| ++++||+++.++... .+..+. + .
T Consensus 381 i~g~~~~~~d~~~iP~~vft~P------eiA~VGlTE~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (542)
T 4b1b_A 381 LFKDSDEIMDYSYIPTSIYTPI------EYGACGYSEEKAYELYGKSNVEVFLQEFNNLEISAVHRQKHIRAQKDEYDLD 454 (542)
T ss_dssp HHSCCCCCCCCSSCCEEECSSS------CEEEEECCHHHHHHHHCTTTEEEEEC--------------------------
T ss_pred HhcCCCcccCCCCCceEEeCCC------CeEEEeCCHHHHHHhCCCCcEEEEEeeccchhhhhhhhhhhhhccccccccc
Confidence 9986543334455788888877 899999998776421 111100 0 0
Q ss_pred cCCccEEEEEE---ECCeEEEEEEEcCC--chHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 395 TRGEEYIKLVM---KDGRMQGAVLIGET--EIEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 395 ~~~~~~~k~~~---~~~~i~G~~~~g~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
....+|+|+++ ++++|||+|++|++ +.++.+..+|++++|++||.+. .+|++++++
T Consensus 455 ~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI~~~alAi~~~~t~~dl~~~-i~~HPTlsE 515 (542)
T 4b1b_A 455 VSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALRLKVKKKDFDNC-IGIHPTDAE 515 (542)
T ss_dssp ---CCCEEEEEETTTTTBEEEEEEESTTHHHHHHHHHHHHHTCCBHHHHHHC----------
T ss_pred CCCceEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcc-CCcCCCHHH
Confidence 12468999997 47999999999998 4678999999999999999665 555555555
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-51 Score=425.51 Aligned_cols=396 Identities=20% Similarity=0.236 Sum_probs=305.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc-ccc-cccccc-ccchhhhHHHHHhc--CcEEE-cce
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK-TVP-VTKLLS-DITVEETDANKFEG--LCTVI-VDT 75 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~-~~~-~~~~~~-~~~~~~~~~~~~~~--~i~~~-~~~ 75 (454)
++||+|||||+||++||..|++.+++.+|+|||+++.+++... .+. ...... .........+.+.+ +++++ ..+
T Consensus 1 M~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (565)
T 3ntd_A 1 MKKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHE 80 (565)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCE
Confidence 1589999999999999999999878899999999988653211 111 111111 11122223344443 89986 569
Q ss_pred EEEEeCcccEEEecc---Cc--EEEecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHh--hcCCeEEEEcCc
Q psy1545 76 VAAIDPRVNCVITEK---QN--RIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKL--KSAKKIVVIGNG 144 (454)
Q Consensus 76 v~~i~~~~~~v~~~~---g~--~i~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~--~~~~~vvVvG~G 144 (454)
|+.+++..+.+.+.+ ++ ++.||+||||||++|+.|+++ .+++...+..++..+.+.+ ..+++++|||+|
T Consensus 81 V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ipG~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG 160 (565)
T 3ntd_A 81 VVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGG 160 (565)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTCCSTTEECCSSHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred EEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhhCCCCEEEEECCC
Confidence 999999988887753 44 799999999999999988887 4566666666666665433 347899999999
Q ss_pred hhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccccccc
Q psy1545 145 GIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNL 222 (454)
Q Consensus 145 ~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (454)
++|+|+|..+. |.+|+++++.+++++ .+++++...+.+.+.+
T Consensus 161 ~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~----------------------------------- 204 (565)
T 3ntd_A 161 FIGLEMMESLHHLGIKTTLLELADQVMT-PVDREMAGFAHQAIRD----------------------------------- 204 (565)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSSSSCT-TSCHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHHHhcCCcEEEEEcCCccch-hcCHHHHHHHHHHHHH-----------------------------------
Confidence 99999999986 999999999999888 4788888877777755
Q ss_pred ccCccCCceEEEeCceEEEEEcC------------------CCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCC
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDS------------------EDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGT 284 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~------------------~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~ 284 (454)
.||++++++.+++++.+ . ...+.+.+++|+++++|.|++|+|++|+.+ +++..
T Consensus 205 ------~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~-l~~~~ 275 (565)
T 3ntd_A 205 ------QGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHI--KGHLSLTLSNGELLETDLLIMAIGVRPETQ-LARDA 275 (565)
T ss_dssp ------TTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCT--TCEEEEEETTSCEEEESEEEECSCEEECCH-HHHHH
T ss_pred ------CCCEEEeCCeEEEEeccccccccccccccccccccC--CCcEEEEEcCCCEEEcCEEEECcCCccchH-HHHhC
Confidence 89999999999999862 1 124667788899999999999999999998 87777
Q ss_pred CceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeee
Q psy1545 285 PFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTH 364 (454)
Q Consensus 285 ~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~ 364 (454)
|++++++|+|.||+++||+.|+|||+|||+..+....+.+..+++++.|..||++||+||++... .++....+.
T Consensus 276 g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~------~~~~~~~~~ 349 (565)
T 3ntd_A 276 GLAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGREE------RYQGTQGTA 349 (565)
T ss_dssp TCCBCTTSSBCCCTTCBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCC------CCCCBCCCE
T ss_pred CcccCCCCCEEECCCcccCCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhcCCCc------cCCCcccce
Confidence 88888899999999999999999999999976544444444567899999999999999997532 133233344
Q ss_pred eeeecCeEEEEeecccCCcCCC--CceEEE-ee--------cCCccEEEEEE--ECCeEEEEEEEcCCc---hHHHHHHH
Q psy1545 365 MTKFFGYKVILLGLFNGQTLEN--DYEILL-RV--------TRGEEYIKLVM--KDGRMQGAVLIGETE---IEEMCENL 428 (454)
Q Consensus 365 ~~~~~~~~~~~vG~~~~~~~~~--~~~~~~-~~--------~~~~~~~k~~~--~~~~i~G~~~~g~~~---~~~~~~~~ 428 (454)
+..+++.+++.+|+++.++... .+.... .. ....+|+|+++ ++++|+|+|++|+.+ .++.++.+
T Consensus 350 ~~~~~~~~~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~v~~~~~~~ilG~~~~g~~a~~e~i~~~~~a 429 (565)
T 3ntd_A 350 ICKVFDLAVGATGKNEKQLKQAGIAFEKVYVHTASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVA 429 (565)
T ss_dssp EEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHH
T ss_pred EEEEcCcEEEEecCCHHHHHHcCCCeEEEEEecCcccCcCCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHH
Confidence 4677889999999999875432 332221 10 23457999999 589999999999986 57899999
Q ss_pred HhcCCCcchhhhhc--cCCCCC
Q psy1545 429 ILNQLDLTDIADDL--LNPNID 448 (454)
Q Consensus 429 i~~~~~~~~~~~~~--~~~~~~ 448 (454)
|++++|++|+.+.. ++|.++
T Consensus 430 i~~~~~~~~l~~~~~~~~P~~~ 451 (565)
T 3ntd_A 430 QRAGMTVEQLQHLELSYAPPYG 451 (565)
T ss_dssp HHTTCBHHHHTTCCCCCCTTTC
T ss_pred HHcCCCHHHHhhhhhccCcccC
Confidence 99999999997765 456554
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-52 Score=408.07 Aligned_cols=356 Identities=22% Similarity=0.314 Sum_probs=292.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc----cccchhhhHHHHHhc-CcEEEcc-eE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL----SDITVEETDANKFEG-LCTVIVD-TV 76 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~i~~~~~-~v 76 (454)
.+|+|||||+||++||..|+. ++.+|+|||+++..++ .++.++..+ ...++.....+++.+ +++++.+ +|
T Consensus 10 ~~~vIvGgG~AGl~aA~~L~~--~~~~itlie~~~~~~y--~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V 85 (385)
T 3klj_A 10 TKILILGAGPAGFSAAKAALG--KCDDITMINSEKYLPY--YRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFA 85 (385)
T ss_dssp CSEEEECCSHHHHHHHHHHTT--TCSCEEEECSSSSCCB--CGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCE
T ss_pred CCEEEEcCcHHHHHHHHHHhC--CCCEEEEEECCCCCCc--ccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEE
Confidence 689999999999999999954 4899999999987653 233332222 112233334555666 9999866 89
Q ss_pred EEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC--CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHh
Q psy1545 77 AAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS--PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHEL 154 (454)
Q Consensus 77 ~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l 154 (454)
+.++++.+.|++++|+++.||+||||||++|+.|+++ ++++++++.+++.++++.+..+++++|||+|++|+|+|..|
T Consensus 86 ~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i~G~~~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l 165 (385)
T 3klj_A 86 TSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAI 165 (385)
T ss_dssp EEEETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTCSCEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHH
T ss_pred EEEECCCCEEEECCCCEEECCEEEEecCCCcCCCCCCCCCCeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999887 56777888899998888777789999999999999999999
Q ss_pred c--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceE
Q psy1545 155 S--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKIT 232 (454)
Q Consensus 155 ~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~ 232 (454)
. |.+||++++.++++++.+++++.+.+.+.+.+ .||+
T Consensus 166 ~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~-----------------------------------------~gV~ 204 (385)
T 3klj_A 166 IDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDR-----------------------------------------LGIK 204 (385)
T ss_dssp HHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHT-----------------------------------------TTCE
T ss_pred HhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHh-----------------------------------------CCCE
Confidence 6 99999999999999887888888888777755 8999
Q ss_pred EEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCceeecCc
Q psy1545 233 IEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGD 312 (454)
Q Consensus 233 i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD 312 (454)
+++++.++++ |+++++|.|++|+|++|+.+ +++..++.++ ++|.||+++||+.|+|||+||
T Consensus 205 ~~~~~~v~~i----------------g~~~~~D~vv~a~G~~p~~~-~~~~~gl~~~--~gi~vd~~~~t~~~~IyA~GD 265 (385)
T 3klj_A 205 IYTNSNFEEM----------------GDLIRSSCVITAVGVKPNLD-FIKDTEIASK--RGILVNDHMETSIKDIYACGD 265 (385)
T ss_dssp EECSCCGGGC----------------HHHHHHSEEEECCCEEECCG-GGTTSCCCBS--SSEEECTTCBCSSTTEEECGG
T ss_pred EEeCCEEEEc----------------CeEEecCeEEECcCcccChh-hhhhcCCCcC--CCEEECCCcccCCCCEEEEEe
Confidence 9999877544 45789999999999999998 8888888874 449999999999999999999
Q ss_pred ccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEE
Q psy1545 313 VCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILL 392 (454)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~ 392 (454)
|+..+.. .+++|+.|..||+.||+||++... .|+..+.+.++++++.+++++|.++.++. +.++
T Consensus 266 ~a~~~~~------~~~~~~~A~~qg~~aa~~i~g~~~------~~~~~~~~~~~~~~~~~~~~~G~~~~~~~----~~~~ 329 (385)
T 3klj_A 266 VAEFYGK------NPGLINIANKQGEVAGLNACGEDA------SYSEIIPSPILKVSGISIISCGDIENNKP----SKVF 329 (385)
T ss_dssp GEEETTB------CCCCHHHHHHHHHHHHHHHTTCCC------CCCCCCCCCEEEETTEEEEEESCCTTCCC----SEEE
T ss_pred eEecCCC------cccHHHHHHHHHHHHHHHhcCCCc------CCCCCCCcEEEEeCCCcEEEEcCCCCCCC----eEEE
Confidence 9985421 246789999999999999998532 23333345567889999999999875421 1233
Q ss_pred eecCCccEEEEEEECCeEEEEEEEcCCchHHHHHHHHhcCCCcchh
Q psy1545 393 RVTRGEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDI 438 (454)
Q Consensus 393 ~~~~~~~~~k~~~~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~ 438 (454)
++.....|+|+++++|+|+|++++|+......+..+|+++.+++++
T Consensus 330 ~~~~~~~~~~~~~~~~~l~g~~~~g~~~~~~~~~~~i~~~~~~~~~ 375 (385)
T 3klj_A 330 RSTQEDKYIVCMLKENKIDAAAVIGDVSLGTKLKKAIDSSKSFDNI 375 (385)
T ss_dssp EEECSSCEEEEEEETTEEEEEEEESCHHHHHHHHHHHHTTCBCSCC
T ss_pred EECCCCeEEEEEEECCEEEEEEEECCcHHHHHHHHHHHcCCCcccc
Confidence 3344568999999999999999999998888999999999999996
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-50 Score=405.80 Aligned_cols=393 Identities=23% Similarity=0.309 Sum_probs=296.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc-cccc-cccccc-cchhhhHHHHHhc-CcEEE-cceEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK-TVPV-TKLLSD-ITVEETDANKFEG-LCTVI-VDTVA 77 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~-~~~~-~~~~~~-~~~~~~~~~~~~~-~i~~~-~~~v~ 77 (454)
+||+|||||+||++||..|++.+++.+|+|||+++..++... .+.+ ...... .++.....+.+.+ +++++ ...+.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 80 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT 80 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence 489999999999999999999877899999999986543211 1100 111111 1112222344555 89985 45888
Q ss_pred EEeCcccEEEecc---Cc--EEEecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhh--cCCeEEEEcCchh
Q psy1545 78 AIDPRVNCVITEK---QN--RIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLK--SAKKIVVIGNGGI 146 (454)
Q Consensus 78 ~i~~~~~~v~~~~---g~--~i~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~--~~~~vvVvG~G~~ 146 (454)
.++.+.+.|.+.+ |+ +++||+||||||++|+.|+++ ++++++.+.+++..+.+.+. .+++++|||+|++
T Consensus 81 ~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~ 160 (447)
T 1nhp_A 81 AIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYI 160 (447)
T ss_dssp EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCSTTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHH
T ss_pred EEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHH
Confidence 9998888887754 54 489999999999999988877 34666667778877777666 6899999999999
Q ss_pred HHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccccccccc
Q psy1545 147 ATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHG 224 (454)
Q Consensus 147 g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (454)
|+|+|..+. |.+|+++++.++++++.+++++.+.+.+.+.+
T Consensus 161 g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~------------------------------------- 203 (447)
T 1nhp_A 161 GIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA------------------------------------- 203 (447)
T ss_dssp HHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHT-------------------------------------
T ss_pred HHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHh-------------------------------------
Confidence 999999986 99999999999988866788777777777654
Q ss_pred CccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEecccccccc
Q psy1545 225 SSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSI 304 (454)
Q Consensus 225 ~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~ 304 (454)
.||++++++.|++++.++ ....+.+ ++.++++|.|++|+|++|+.+ +++.. ++++.+|+|.||+++||+.
T Consensus 204 ----~gv~i~~~~~v~~i~~~~---~v~~v~~-~~~~i~~d~vi~a~G~~p~~~-~~~~~-~~~~~~G~i~Vd~~~~t~~ 273 (447)
T 1nhp_A 204 ----NNITIATGETVERYEGDG---RVQKVVT-DKNAYDADLVVVAVGVRPNTA-WLKGT-LELHPNGLIKTDEYMRTSE 273 (447)
T ss_dssp ----TTEEEEESCCEEEEECSS---BCCEEEE-SSCEEECSEEEECSCEEESCG-GGTTT-SCBCTTSCBCCCTTCBCSS
T ss_pred ----CCCEEEcCCEEEEEEccC---cEEEEEE-CCCEEECCEEEECcCCCCChH-HHHhh-hhhcCCCcEEECccccCCC
Confidence 899999999999998753 1334555 556899999999999999998 87776 7777889999999999999
Q ss_pred CceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcC
Q psy1545 305 SNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTL 384 (454)
Q Consensus 305 ~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~ 384 (454)
|+|||+|||+..+....+.+..+++++.|..||++||+||++... .++......+..+++++++.+|+++.++.
T Consensus 274 ~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~------~~~~~~~~~~~~~~~~~~~~vG~~~~~a~ 347 (447)
T 1nhp_A 274 PDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVK------PFPGVQGSSGLAVFDYKFASTGINEVMAQ 347 (447)
T ss_dssp TTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCC------CCCCBCCCEEEEETTEEEEEEECCHHHHH
T ss_pred CCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhcCCCC------CCCCccccEEEEECCeeeEEecCCHHHHH
Confidence 999999999975433222223357899999999999999997421 11111122346778889999999886654
Q ss_pred CCC--ceEE-Eee--------cCCccEEEEEEE--CCeEEEEEEEcCCc---hHHHHHHHHhcCCCcchhhhhc--cCCC
Q psy1545 385 END--YEIL-LRV--------TRGEEYIKLVMK--DGRMQGAVLIGETE---IEEMCENLILNQLDLTDIADDL--LNPN 446 (454)
Q Consensus 385 ~~~--~~~~-~~~--------~~~~~~~k~~~~--~~~i~G~~~~g~~~---~~~~~~~~i~~~~~~~~~~~~~--~~~~ 446 (454)
..+ +... +.. ....+|+|++++ +++|+|+|++|+.. .++.++.+|++++|++++.+.. .||+
T Consensus 348 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt 427 (447)
T 1nhp_A 348 KLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPA 427 (447)
T ss_dssp HHTCCCEEEEEEEESSCTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTT
T ss_pred HcCCceEEEEEEcCCccccCCCCceEEEEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhcceecCCC
Confidence 222 2211 111 123579999994 79999999999983 5788999999999999997653 4555
Q ss_pred CC
Q psy1545 447 ID 448 (454)
Q Consensus 447 ~~ 448 (454)
++
T Consensus 428 ~~ 429 (447)
T 1nhp_A 428 FD 429 (447)
T ss_dssp TC
T ss_pred CC
Confidence 44
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-51 Score=406.52 Aligned_cols=384 Identities=21% Similarity=0.296 Sum_probs=303.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccccc-ccchhhhHHHHHhc-CcEEEcc-eEEE
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLS-DITVEETDANKFEG-LCTVIVD-TVAA 78 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~i~~~~~-~v~~ 78 (454)
++||+|||||+||+++|..|++.++..+|+|||+++..++ ..+.++..+. .........+.+.+ +++++.+ +|+.
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 84 (408)
T 2gqw_A 7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPY--DRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQS 84 (408)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCB--CSGGGGTHHHHHCCGGGSBCCCTTSCSCEEEETCCEEE
T ss_pred CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcc--cCCCCCHHHhCCCchhhhhHHHHHHCCCEEEcCCEEEE
Confidence 5799999999999999999999954447999999886542 2222221110 00000000113444 8999877 5999
Q ss_pred EeCcccEEEeccCcEEEecEEEEecCCCCCCCCC-C---CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHh
Q psy1545 79 IDPRVNCVITEKQNRIKYKTLCICTGASPRKIWY-S---PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHEL 154 (454)
Q Consensus 79 i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l 154 (454)
++++.+.|.+.+++.+.||+||+|||++|+.|++ + ++++.+++.+++.++.+.+..+++++|||+|++|+|+|..+
T Consensus 85 i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~i~~G~~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l 164 (408)
T 2gqw_A 85 FDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATA 164 (408)
T ss_dssp EETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTTCSSCEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHH
T ss_pred EECCCCEEEECCCCEEECCEEEECCCCCCCCCCccCCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHH
Confidence 9998889999888899999999999999998887 6 35777778888888877666689999999999999999998
Q ss_pred c--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceE
Q psy1545 155 S--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKIT 232 (454)
Q Consensus 155 ~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~ 232 (454)
. |.+|+++++.++++++.+++++...+.+.+.+ .||+
T Consensus 165 ~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~-----------------------------------------~GV~ 203 (408)
T 2gqw_A 165 RTAGVHVSLVETQPRLMSRAAPATLADFVARYHAA-----------------------------------------QGVD 203 (408)
T ss_dssp HHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHH-----------------------------------------TTCE
T ss_pred HhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHH-----------------------------------------cCcE
Confidence 6 99999999999998876788888888777755 8999
Q ss_pred EEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCceeecCc
Q psy1545 233 IEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGD 312 (454)
Q Consensus 233 i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD 312 (454)
+++++.+++++ ++ .+.+++|+++++|.|++|+|++|+.+ +++..+++++ +| |.||+++||+.|+|||+||
T Consensus 204 i~~~~~v~~i~-~~------~v~~~~g~~i~~D~vi~a~G~~p~~~-l~~~~gl~~~-~g-i~Vd~~~~t~~~~IyA~GD 273 (408)
T 2gqw_A 204 LRFERSVTGSV-DG------VVLLDDGTRIAADMVVVGIGVLANDA-LARAAGLACD-DG-IFVDAYGRTTCPDVYALGD 273 (408)
T ss_dssp EEESCCEEEEE-TT------EEEETTSCEEECSEEEECSCEEECCH-HHHHHTCCBS-SS-EECCTTCBCSSTTEEECGG
T ss_pred EEeCCEEEEEE-CC------EEEECCCCEEEcCEEEECcCCCccHH-HHHhCCCCCC-CC-EEECCCCccCCCCEEEEEE
Confidence 99999999998 32 47788999999999999999999998 8887788875 45 9999999999999999999
Q ss_pred ccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEE
Q psy1545 313 VCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILL 392 (454)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~ 392 (454)
|+..+....+.+...++++.|..||++||+||++... . .|+. +.+.++++++.+++++|. +... +..+
T Consensus 274 ~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~---~~~~-~p~~~~~~~~~~~~~~G~-~~~~-----~~~~ 341 (408)
T 2gqw_A 274 VTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTA--P---GYAE-LPWYWSDQGALRIQVAGL-ASGD-----EEIV 341 (408)
T ss_dssp GEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTTS--C---CCCC-CCEEEEEETTEEEEEEEC-SCCS-----EEEE
T ss_pred EEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCCC--C---cCCC-CCeEEEEECCceEEEECC-CCCC-----EEEE
Confidence 9986533223222345789999999999999997532 0 2222 223467889999999998 3211 2233
Q ss_pred eecC---CccEEEEEEECCeEEEEEEEcCCchHHHHHHHHhcCCCcchhhhhccCCCCCCCCC
Q psy1545 393 RVTR---GEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDY 452 (454)
Q Consensus 393 ~~~~---~~~~~k~~~~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 452 (454)
+.++ ..+|.+++.++++|+|++++|.......+..+|+++++++. ..|.+|+++++++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~~~~~~~~~i~~~~~~~~--~~l~~~~~~~~~~ 402 (408)
T 2gqw_A 342 RGEVSLDAPKFTLIELQKGRIVGATCVNNARDFAPLRRLLAVGAKPDR--AALADPATDLRKL 402 (408)
T ss_dssp ESCCCSSSCCEEEEEEETTEEEEEEEESCHHHHHHHHHHHHTTCCCCH--HHHHCTTCCHHHH
T ss_pred EccCCCCCCeEEEEEEeCCEEEEEEEECChHHHHHHHHHHHCCCCCCh--HHhcCCCCCHHHH
Confidence 3232 35688888899999999999999888999999999999988 5789999998765
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-50 Score=407.46 Aligned_cols=393 Identities=22% Similarity=0.320 Sum_probs=299.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc-cccc-ccccc-ccchhhhHHHHH-hc-CcEEEc-ceE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK-TVPV-TKLLS-DITVEETDANKF-EG-LCTVIV-DTV 76 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~-~~~~-~~~~~-~~~~~~~~~~~~-~~-~i~~~~-~~v 76 (454)
+||+|||||+||++||..|++.+++.+|+|||+++..++... .+.+ ..... ..++.....+.+ .. +++++. .+|
T Consensus 37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v 116 (480)
T 3cgb_A 37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEV 116 (480)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCEE
Confidence 599999999999999999999767899999999987543211 1111 11111 112222234445 34 899886 489
Q ss_pred EEEeCcccEEEecc---Cc--EEEecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhh--cCCeEEEEcCch
Q psy1545 77 AAIDPRVNCVITEK---QN--RIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLK--SAKKIVVIGNGG 145 (454)
Q Consensus 77 ~~i~~~~~~v~~~~---g~--~i~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~--~~~~vvVvG~G~ 145 (454)
+.++.+.+.+.+.+ |+ ++.||+||+|||++|+.|+++ ++++.+.+.+++.++.+.+. .+++++|||+|+
T Consensus 117 ~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ 196 (480)
T 3cgb_A 117 TKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGA 196 (480)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCBTTTSBTEECCSSHHHHHHHHHHHHSSCCCEEEEECCHH
T ss_pred EEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCCCCCccCCCEEEeCCHHHHHHHHHHhhhcCCCeEEEECCCH
Confidence 99998888777653 65 799999999999999988876 34666677888888877665 689999999999
Q ss_pred hHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccc
Q psy1545 146 IATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLH 223 (454)
Q Consensus 146 ~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (454)
+|+|+|..+. |.+|+++++.+++++ .+++++.+.+.+.+.+
T Consensus 197 ~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~------------------------------------ 239 (480)
T 3cgb_A 197 IGLEMAETFVELGKKVRMIERNDHIGT-IYDGDMAEYIYKEADK------------------------------------ 239 (480)
T ss_dssp HHHHHHHHHHHTTCEEEEECCGGGTTS-SSCHHHHHHHHHHHHH------------------------------------
T ss_pred HHHHHHHHHHhcCCeEEEEEeCCchhh-cCCHHHHHHHHHHHHH------------------------------------
Confidence 9999999986 999999999998887 3677777777777654
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccc
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTS 303 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~ 303 (454)
.||++++++.|++++.++ ....+.++ +.++++|.|++|+|++|+.+ +++..|++++++|+|.||+++||+
T Consensus 240 -----~Gv~i~~~~~v~~i~~~~---~v~~v~~~-~~~i~~D~vi~a~G~~p~~~-~l~~~g~~~~~~G~I~Vd~~~~ts 309 (480)
T 3cgb_A 240 -----HHIEILTNENVKAFKGNE---RVEAVETD-KGTYKADLVLVSVGVKPNTD-FLEGTNIRTNHKGAIEVNAYMQTN 309 (480)
T ss_dssp -----TTCEEECSCCEEEEEESS---BEEEEEET-TEEEECSEEEECSCEEESCG-GGTTSCCCBCTTSCBCCCTTSBCS
T ss_pred -----cCcEEEcCCEEEEEEcCC---cEEEEEEC-CCEEEcCEEEECcCCCcChH-HHHhCCcccCCCCCEEECCCccCC
Confidence 899999999999998753 13345554 45899999999999999998 888888998888999999999999
Q ss_pred cCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCc
Q psy1545 304 ISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQT 383 (454)
Q Consensus 304 ~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~ 383 (454)
.|+|||+|||+..+....+.+..+++++.|..||++||+||++... .++......+..+++.+++.+|+++.++
T Consensus 310 ~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~------~~~~~~~~~~~~~~~~~~~~vG~~~~~a 383 (480)
T 3cgb_A 310 VQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKRR------AFKGTLGTGIIKFMNLTLARTGLNEKEA 383 (480)
T ss_dssp STTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCC------CCCCBCCCEEEEETTEEEEEEECCHHHH
T ss_pred CCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcCCCc------cCCCccceeEEEECCcEEEEeCCCHHHH
Confidence 9999999999976433323323356899999999999999997421 1211112235677788999999988765
Q ss_pred CCCC--ceEE-Eee--------cCCccEEEEEE--ECCeEEEEEEEcCCc---hHHHHHHHHhcCCCcchhhhhc--cCC
Q psy1545 384 LEND--YEIL-LRV--------TRGEEYIKLVM--KDGRMQGAVLIGETE---IEEMCENLILNQLDLTDIADDL--LNP 445 (454)
Q Consensus 384 ~~~~--~~~~-~~~--------~~~~~~~k~~~--~~~~i~G~~~~g~~~---~~~~~~~~i~~~~~~~~~~~~~--~~~ 445 (454)
...+ +... +.. ....+|+|+++ ++++|+|+|++|+.+ .++.++.+|++++|++++.+.. .+|
T Consensus 384 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~vg~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~P 463 (480)
T 3cgb_A 384 KGLHIPYKTVKVDSTNMAGYYPNAKPLYLKLLYRSDTKQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHDLEDVDLSYAP 463 (480)
T ss_dssp HHTTCCEEEEEEEEESSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCT
T ss_pred HHcCCceEEEEEecCCcccccCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhcccccCC
Confidence 4322 2221 111 12357999999 489999999999983 5788999999999999998754 455
Q ss_pred CCC
Q psy1545 446 NID 448 (454)
Q Consensus 446 ~~~ 448 (454)
+++
T Consensus 464 t~~ 466 (480)
T 3cgb_A 464 PYN 466 (480)
T ss_dssp TTC
T ss_pred CCC
Confidence 544
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-51 Score=417.10 Aligned_cols=384 Identities=18% Similarity=0.238 Sum_probs=288.9
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCC-CCeEEEECCCCccccccccccccc-------------------ccc------c
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHP-GESIGLVTPSGIVKAVTKTVPVTK-------------------LLS------D 54 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~-g~~v~lie~~~~~~~~~~~~~~~~-------------------~~~------~ 54 (454)
|++||+|||||++|++||..|++..+ |.+|+|||+++..+.+.++...+. .+. .
T Consensus 1 M~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (499)
T 1xdi_A 1 MVTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAK 80 (499)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------C
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCCcCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCc
Confidence 78999999999999999999999866 889999999984333322211000 000 0
Q ss_pred cchh--------------hhHHHHHhc-CcEEEcceEEEEeC------cccEEEeccCc--EEEecEEEEecCCCCCCCC
Q psy1545 55 ITVE--------------ETDANKFEG-LCTVIVDTVAAIDP------RVNCVITEKQN--RIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 55 ~~~~--------------~~~~~~~~~-~i~~~~~~v~~i~~------~~~~v~~~~g~--~i~~d~lviAtG~~p~~~~ 111 (454)
.++. ....+.+.+ +++++.+++.++++ ....|...+|+ .+.||+||+|||++|+.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~p~ 160 (499)
T 1xdi_A 81 ISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILP 160 (499)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCG
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCC
Confidence 1111 011233334 89999888988887 44456556676 7999999999999998887
Q ss_pred CC-CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhcc
Q psy1545 112 YS-PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKT 188 (454)
Q Consensus 112 ~~-~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~ 188 (454)
++ .....+.+..++..+.. .+++++|||+|++|+|+|..+. |.+|+++++.+++++. +++++...+.+.+.+
T Consensus 161 i~g~~~~~v~~~~~~~~~~~---~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~- 235 (499)
T 1xdi_A 161 SAQPDGERILTWRQLYDLDA---LPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-EDADAALVLEESFAE- 235 (499)
T ss_dssp GGCCCSSSEEEGGGGGGCSS---CCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-SSHHHHHHHHHHHHH-
T ss_pred CCCCCcCcEEehhHhhhhhc---cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHHHH-
Confidence 76 11122345555554432 3799999999999999999986 9999999999999886 788888888777755
Q ss_pred CCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEE
Q psy1545 189 NTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVV 268 (454)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi 268 (454)
.||++++++.|++++.+++ .+.+.+.+|+++++|.||
T Consensus 236 ----------------------------------------~GV~i~~~~~V~~i~~~~~---~v~v~~~~g~~i~aD~Vv 272 (499)
T 1xdi_A 236 ----------------------------------------RGVRLFKNARAASVTRTGA---GVLVTMTDGRTVEGSHAL 272 (499)
T ss_dssp ----------------------------------------TTCEEETTCCEEEEEECSS---SEEEEETTSCEEEESEEE
T ss_pred ----------------------------------------CCCEEEeCCEEEEEEEeCC---EEEEEECCCcEEEcCEEE
Confidence 8999999999999987653 366778888899999999
Q ss_pred EeeccCcCcccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 269 SAIGVVPNSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 269 ~a~G~~p~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
+|+|++|+.+ + ++..|++++++|+|.||+++||+.|+|||+|||+..+ ++++.|..||++||.||++
T Consensus 273 ~a~G~~p~~~-~l~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g 341 (499)
T 1xdi_A 273 MTIGSVPNTS-GLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLL----------PLASVAAMQGRIAMYHALG 341 (499)
T ss_dssp ECCCEEECCS-SSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEECSGGGTSC----------SCHHHHHHHHHHHHHHHTT
T ss_pred ECCCCCcCCC-cCCchhcCceECCCCCEEECCCcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHhcC
Confidence 9999999998 7 6777898888899999999999999999999998743 5788999999999999997
Q ss_pred CCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCc--eEEEe----------ecCCccEEEEEEE--CCeEEE
Q psy1545 347 AVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDY--EILLR----------VTRGEEYIKLVMK--DGRMQG 412 (454)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~--~~~~~----------~~~~~~~~k~~~~--~~~i~G 412 (454)
.......+..+|+.+ +++.+++++|+++.++...++ .+... .....+|+|++++ +++|+|
T Consensus 342 ~~~~~~~~~~~p~~~------~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG 415 (499)
T 1xdi_A 342 EGVSPIRLRTVAATV------FTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIG 415 (499)
T ss_dssp CCCCCCCGGGCEEEE------CSSSEEEEEESCHHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEE
T ss_pred CCCccCCCCCCcEEE------EecCCceEeCCCHHHHHhCCCCEEEEEEecCcccceeecCCCceEEEEEEECCCCEEEE
Confidence 421111122334433 445699999999876543333 22211 1235689999995 799999
Q ss_pred EEEEcCCc--hHHHHHHHHhcCCCcchhhhhccCCCCCCC
Q psy1545 413 AVLIGETE--IEEMCENLILNQLDLTDIADDLLNPNIDID 450 (454)
Q Consensus 413 ~~~~g~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 450 (454)
+|++|+.. .++.++.+|++++|++++.+. .++.+++.
T Consensus 416 ~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~-~~~~Pt~~ 454 (499)
T 1xdi_A 416 GVVVAPIASELILPIAVAVQNRITVNELAQT-LAVYPSLS 454 (499)
T ss_dssp EEEEETTHHHHHHHHHHHHHHTCBHHHHHTS-BCCSSSTH
T ss_pred EEEECCchHHHHHHHHHHHHCCCCHHHHhcc-cccCCCch
Confidence 99999984 468999999999999999765 44444443
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-50 Score=400.46 Aligned_cols=390 Identities=18% Similarity=0.288 Sum_probs=307.2
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccccc-----ccchhhhHHHHHhc-CcEEEcc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLS-----DITVEETDANKFEG-LCTVIVD 74 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~i~~~~~ 74 (454)
|++||+|||||+||+++|..|++.+...+|+|||+++...+ ..+.++..+. ...+.....+.+.+ +++++.+
T Consensus 3 ~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~ 80 (431)
T 1q1r_A 3 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPH--HLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGG 80 (431)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCB--CSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECS
T ss_pred CCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCC--cCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeC
Confidence 35899999999999999999999844448999999876542 2222222111 01111122344555 9999876
Q ss_pred -eEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC----Cc---eeeeeccchHHHHHHHhhcCCeEEEEcCchh
Q psy1545 75 -TVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS----PH---VITIRDTDSVAVLQEKLKSAKKIVVIGNGGI 146 (454)
Q Consensus 75 -~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~----~~---~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~ 146 (454)
+|+.+++..+.|.+.+|+.+.||+||+|||++|+.|+++ .+ ++.+++.+++..+.+.+..+++++|||+|++
T Consensus 81 ~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~ 160 (431)
T 1q1r_A 81 TQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYI 160 (431)
T ss_dssp CCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTTHHHHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHH
T ss_pred CEEEEEECCCCEEEECCCCEEECCEEEEcCCCCccCCCCCCcccCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHH
Confidence 799999988899998888999999999999999988876 23 6667788888888877767999999999999
Q ss_pred HHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccccccccc
Q psy1545 147 ATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHG 224 (454)
Q Consensus 147 g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (454)
|+|+|..+. |.+|+++++.++++++.+++++.+.+.+.+.+
T Consensus 161 g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~------------------------------------- 203 (431)
T 1q1r_A 161 GLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHRE------------------------------------- 203 (431)
T ss_dssp HHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHH-------------------------------------
T ss_pred HHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHh-------------------------------------
Confidence 999999986 99999999999998876788888877777755
Q ss_pred CccCCceEEEeCceEEEEEc--CCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEecccccc
Q psy1545 225 SSRDTKITIEYSCEVERIVD--SEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQT 302 (454)
Q Consensus 225 ~l~~~gv~i~~~~~v~~i~~--~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t 302 (454)
.||++++++.+++++. .+ +....+.+++|+++++|.||+|+|++|+.+ +++..+++++ + +|.||+++||
T Consensus 204 ----~GV~i~~~~~v~~i~~~~~~--~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~-l~~~~gl~~~-~-gi~Vd~~~~t 274 (431)
T 1q1r_A 204 ----AGVDIRTGTQVCGFEMSTDQ--QKVTAVLCEDGTRLPADLVIAGIGLIPNCE-LASAAGLQVD-N-GIVINEHMQT 274 (431)
T ss_dssp ----HTCEEECSCCEEEEEECTTT--CCEEEEEETTSCEEECSEEEECCCEEECCH-HHHHTTCCBS-S-SEECCTTSBC
T ss_pred ----CCeEEEeCCEEEEEEeccCC--CcEEEEEeCCCCEEEcCEEEECCCCCcCcc-hhhccCCCCC-C-CEEECCCccc
Confidence 8999999999999986 33 224468888999999999999999999998 8888888874 4 4999999999
Q ss_pred ccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCC
Q psy1545 303 SISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQ 382 (454)
Q Consensus 303 ~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 382 (454)
+.|+|||+|||+..+....+.+....+++.|..||++||+||++... .+...|+ .++++++.++..+|.++..
T Consensus 275 s~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~---~~~~~p~----~~~~~~~~~~~~~G~~~~~ 347 (431)
T 1q1r_A 275 SDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKVP---RDEAAPW----FWSDQYEIGLKMVGLSEGY 347 (431)
T ss_dssp SSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTCCC---CCCCCCE----EEEEETTEEEEEEECCTTC
T ss_pred CCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhcCCCC---CCCCCCe----EEEEECCceEEEEeCCCCC
Confidence 99999999999986533323333345789999999999999997532 1222222 3567889999999987632
Q ss_pred cCCCCceEEEeecC-CccEEEEEEECCeEEEEEEEcCCchHHHHHHHHhcCCCcchhhhhccCCCCCCCCC
Q psy1545 383 TLENDYEILLRVTR-GEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNIDIDDY 452 (454)
Q Consensus 383 ~~~~~~~~~~~~~~-~~~~~k~~~~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 452 (454)
. +..++.++ ...|++++.++++|+|++++|.......+..+|..+.+++. +.|.+|.++++++
T Consensus 348 ~-----~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~~~~~~~~~i~~~~~~~~--~~l~~~~~~~~~~ 411 (431)
T 1q1r_A 348 D-----RIIVRGSLAQPDFSVFYLQGDRVLAVDTVNRPVEFNQSKQIITDRLPVEP--NLLGDESVPLKEI 411 (431)
T ss_dssp S-----EEEEEEETTTTEEEEEEEETTEEEEEEEESCHHHHHHHHHHHHTTCCCCH--HHHTCTTSCHHHH
T ss_pred C-----EEEEEccCCCCeEEEEEEeCCEEEEEEEECChHHHHHHHHHHHCCCCCCH--HHhhCCCCCHHHH
Confidence 1 22333333 34688877799999999999999889999999999999987 6889999998765
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-51 Score=410.30 Aligned_cols=383 Identities=21% Similarity=0.238 Sum_probs=284.3
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccc--------------------cc---cccch
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTK--------------------LL---SDITV 57 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~--------------------~~---~~~~~ 57 (454)
+++||+|||||+||+++|..|++. |.+|+|||++...+.+.+....+. .+ ...++
T Consensus 2 ~~~dvvIIGaG~aGl~aA~~l~~~--G~~V~liE~~~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (464)
T 2a8x_A 2 THYDVVVLGAGPGGYVAAIRAAQL--GLSTAIVEPKYWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDY 79 (464)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCH
Confidence 058999999999999999999998 899999999854333222110000 00 00011
Q ss_pred hh--------------hHHHHHhc-CcEEEcceEEEEeCcccEEEeccC--cEEEecEEEEecCCCCCCCCCCCceeeee
Q psy1545 58 EE--------------TDANKFEG-LCTVIVDTVAAIDPRVNCVITEKQ--NRIKYKTLCICTGASPRKIWYSPHVITIR 120 (454)
Q Consensus 58 ~~--------------~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lviAtG~~p~~~~~~~~~~~~~ 120 (454)
.. ...+.+.+ +++++.+.+..++.+...|.+.+| +++.||+||+|||++|+.|++++.-..+.
T Consensus 80 ~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~~g~~~~~~ 159 (464)
T 2a8x_A 80 GIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSANVV 159 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTTCCCBTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCceEE
Confidence 10 01223334 899998877777666556666667 68999999999999998887662111144
Q ss_pred ccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhh
Q psy1545 121 DTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFK 198 (454)
Q Consensus 121 ~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~ 198 (454)
+.+++..+.+ .+++++|||+|++|+|+|..+. |.+|+++++.+++++. +++++.+.+.+.+.+
T Consensus 160 ~~~~~~~~~~---~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~----------- 224 (464)
T 2a8x_A 160 TYEEQILSRE---LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN-EDADVSKEIEKQFKK----------- 224 (464)
T ss_dssp CHHHHHTCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH-----------
T ss_pred ecHHHhhccc---cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHHHH-----------
Confidence 5555554332 4899999999999999999986 9999999999999884 788888888777755
Q ss_pred hcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec-CC--cEEecCEEEEeeccCc
Q psy1545 199 RMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT-NG--HTHACDIVVSAIGVVP 275 (454)
Q Consensus 199 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~-~g--~~~~~D~vi~a~G~~p 275 (454)
.||++++++.+++++.+++ .+.+.++ +| +++++|.|++|+|++|
T Consensus 225 ------------------------------~gv~i~~~~~v~~i~~~~~---~~~v~~~~~g~~~~~~~D~vv~a~G~~p 271 (464)
T 2a8x_A 225 ------------------------------LGVTILTATKVESIADGGS---QVTVTVTKDGVAQELKAEKVLQAIGFAP 271 (464)
T ss_dssp ------------------------------HTCEEECSCEEEEEEECSS---CEEEEEESSSCEEEEEESEEEECSCEEE
T ss_pred ------------------------------cCCEEEeCcEEEEEEEcCC---eEEEEEEcCCceEEEEcCEEEECCCCCc
Confidence 8999999999999987652 3556665 66 6799999999999999
Q ss_pred Ccccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC-c
Q psy1545 276 NSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE-P 352 (454)
Q Consensus 276 ~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~-~ 352 (454)
+.+ + ++..+++++++|+|.||+++||+.|+|||+|||+..+ ++++.|..||++||+||++..... .
T Consensus 272 ~~~-~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~ 340 (464)
T 2a8x_A 272 NVE-GYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLL----------QLAHVAEAQGVVAAETIAGAETLTLG 340 (464)
T ss_dssp CCS-SSCHHHHTCCBCTTSSBCCCTTSBCSSTTEEECGGGGCSS----------CSHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred cCC-CCCchhcCCccCCCCCEeECcCCccCCCCEEEeECcCCCc----------cCHHHHHHHHHHHHHHhcCCCCcccC
Confidence 998 6 5566788887899999999999999999999999743 578899999999999999731111 1
Q ss_pred ceeccceeeeeeeeeecCeEEEEeecccCCcCCCC--ceEEEe----------ecCCccEEEEEEE--CCeEEEEEEEcC
Q psy1545 353 VIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEND--YEILLR----------VTRGEEYIKLVMK--DGRMQGAVLIGE 418 (454)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~--~~~~~~----------~~~~~~~~k~~~~--~~~i~G~~~~g~ 418 (454)
.+...|+.+ +++.+++++|+++.++...+ +.+... .....+|+|++++ +++|+|+|++|+
T Consensus 341 ~~~~~p~~~------~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~ 414 (464)
T 2a8x_A 341 DHRMLPRAT------FCQPNVASFGLTEQQARNEGYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGH 414 (464)
T ss_dssp CGGGSCEEE------CSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEEET
T ss_pred CCCCCCEEE------ECCCCeEEEcCCHHHHHhcCCCEEEEEEEcchhhhhhhcCCCcEEEEEEEECCCCEEEEEEEECc
Confidence 122234433 44559999999987764333 322211 1235689999994 899999999999
Q ss_pred C--chHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 419 T--EIEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 419 ~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
. +.++.++.+|++++|++++.+.+ ++++++.+
T Consensus 415 ~a~e~i~~~~~ai~~~~~~~~l~~~~-~~~Pt~~e 448 (464)
T 2a8x_A 415 DVAELLPELTLAQRWDLTASELARNV-HTHPTMSE 448 (464)
T ss_dssp TGGGGHHHHHHHHHTTCBHHHHTTSC-CCTTCTTH
T ss_pred CHHHHHHHHHHHHHCCCCHHHHhhCc-cCCCChHH
Confidence 8 46899999999999999997653 45555443
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=407.29 Aligned_cols=382 Identities=19% Similarity=0.261 Sum_probs=284.3
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccc-------------------cc----cccch
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTK-------------------LL----SDITV 57 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~-------------------~~----~~~~~ 57 (454)
|++||+|||||+||++||..|++. |.+|+|||++...+.+.++...+. .. ...++
T Consensus 2 ~~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lie~~~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 79 (455)
T 1ebd_A 2 IETETLVVGAGPGGYVAAIRAAQL--GQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDF 79 (455)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC--CCeEEEEECCCCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence 368999999999999999999998 899999999854433322211000 00 00111
Q ss_pred h--------------hhHHHHHhc-CcEEEcceEEEEeCcccEEEeccC-cEEEecEEEEecCCCCCCCCCCCceeeeec
Q psy1545 58 E--------------ETDANKFEG-LCTVIVDTVAAIDPRVNCVITEKQ-NRIKYKTLCICTGASPRKIWYSPHVITIRD 121 (454)
Q Consensus 58 ~--------------~~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g-~~i~~d~lviAtG~~p~~~~~~~~~~~~~~ 121 (454)
. ......+.+ +++++.+++..++++...|.+.+| +++.||+||+|||++|+.|++++.-..+.+
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~~g~~~~v~~ 159 (455)
T 1ebd_A 80 AKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNRILD 159 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBTTBCCCSSEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCCCCccceEec
Confidence 0 001223344 899998888888877667776666 689999999999999988877621011445
Q ss_pred cchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhh
Q psy1545 122 TDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKR 199 (454)
Q Consensus 122 ~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~ 199 (454)
..++..+. ..+++++|||+|++|+|+|..|. |.+|+++++.+++++. +++++.+.+.+.+.+
T Consensus 160 ~~~~~~~~---~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~------------ 223 (455)
T 1ebd_A 160 STGALNLG---EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKK------------ 223 (455)
T ss_dssp HHHHHTCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHH------------
T ss_pred HHHHhccc---cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-cCHHHHHHHHHHHHH------------
Confidence 55554432 24899999999999999999986 9999999999998874 677777777777755
Q ss_pred cccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec---CCcEEecCEEEEeeccCcC
Q psy1545 200 MRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---NGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 200 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g~~~~~D~vi~a~G~~p~ 276 (454)
.||++++++.|++++.+++ .+.+.++ +++++++|.|++|+|++|+
T Consensus 224 -----------------------------~gv~i~~~~~v~~i~~~~~---~~~v~~~~~g~~~~~~~D~vv~a~G~~p~ 271 (455)
T 1ebd_A 224 -----------------------------KGVEVVTNALAKGAEERED---GVTVTYEANGETKTIDADYVLVTVGRRPN 271 (455)
T ss_dssp -----------------------------TTCEEEESEEEEEEEEETT---EEEEEEEETTEEEEEEESEEEECSCEEES
T ss_pred -----------------------------CCCEEEeCCEEEEEEEeCC---eEEEEEEeCCceeEEEcCEEEECcCCCcc
Confidence 8999999999999987542 3555554 4578999999999999999
Q ss_pred cccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcce
Q psy1545 277 SNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVI 354 (454)
Q Consensus 277 ~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~ 354 (454)
.+ + ++..+++++++|+|.||+++||+.|+|||+|||+..+ ++++.|..||+.||+||++... ...+
T Consensus 272 ~~-~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~-~~~~ 339 (455)
T 1ebd_A 272 TD-ELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGP----------ALAHKASYEGKVAAEAIAGHPS-AVDY 339 (455)
T ss_dssp CS-SSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTSCCC-CCCC
T ss_pred cC-cCChhhcCCccCCCCCEeeCCCcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHHcCCCc-cCCC
Confidence 98 6 5677888888899999999999999999999998743 5788999999999999997421 1111
Q ss_pred eccceeeeeeeeeecCeEEEEeecccCCcCCCC--ceEEEe----------ecCCccEEEEEEE--CCeEEEEEEEcCC-
Q psy1545 355 QDFSFEMFTHMTKFFGYKVILLGLFNGQTLEND--YEILLR----------VTRGEEYIKLVMK--DGRMQGAVLIGET- 419 (454)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~--~~~~~~----------~~~~~~~~k~~~~--~~~i~G~~~~g~~- 419 (454)
...|+. .+++.+++++|+++.++...+ +.+... .....+|+|++++ +++|+|+|++|+.
T Consensus 340 ~~~p~~------~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a 413 (455)
T 1ebd_A 340 VAIPAV------VFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNA 413 (455)
T ss_dssp SCCCEE------ECSSSCEEEEECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTH
T ss_pred CCCCEE------EECCCceEEEeCCHHHHHhcCCCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEeCCCH
Confidence 122333 445569999999987765433 322211 1235689999994 8999999999998
Q ss_pred -chHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 420 -EIEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 420 -~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
+.++.++.+|++++|++++.+. .++++++.+
T Consensus 414 ~e~i~~~~~ai~~~~~~~~l~~~-~~~~Pt~~e 445 (455)
T 1ebd_A 414 SDMIAELGLAIEAGMTAEDIALT-IHAHPTLGE 445 (455)
T ss_dssp HHHHHHHHHHHHHTCBHHHHHHS-CCCTTSSTH
T ss_pred HHHHHHHHHHHHCCCCHHHHhhc-ccCCCCHHH
Confidence 4689999999999999999765 444444443
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-51 Score=411.35 Aligned_cols=383 Identities=16% Similarity=0.202 Sum_probs=288.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccc---------------------cc--------c
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVT---------------------KL--------L 52 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~---------------------~~--------~ 52 (454)
++||+|||||+||++||..|++. |.+|+|||+++..+.|.+..+.+ .. .
T Consensus 11 ~~dVvVIGgG~aGl~aA~~l~~~--g~~V~liE~~~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 88 (479)
T 2hqm_A 11 HYDYLVIGGGSGGVASARRAASY--GAKTLLVEAKALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEH 88 (479)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--SCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGG
T ss_pred cCCEEEEcCCHHHHHHHHHHHHC--CCcEEEEeCCCcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccccc
Confidence 48999999999999999999998 99999999986554433221100 00 0
Q ss_pred cccchhh--------------hHHHHHhc-CcEEEcceEEEEeCcccEEEeccCc--EEEecEEEEecCCCCCCC-CCCC
Q psy1545 53 SDITVEE--------------TDANKFEG-LCTVIVDTVAAIDPRVNCVITEKQN--RIKYKTLCICTGASPRKI-WYSP 114 (454)
Q Consensus 53 ~~~~~~~--------------~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lviAtG~~p~~~-~~~~ 114 (454)
...++.. .....+.+ +++++.+++..+++....+.+.+|+ .+.||+||||||++|+.| +++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~~i~g 168 (479)
T 2hqm_A 89 LTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPG 168 (479)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECCCTTSTT
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCCCCC
Confidence 0111110 01122333 8999988888888776667666776 899999999999999988 7772
Q ss_pred ceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCC
Q psy1545 115 HVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAK 192 (454)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~ 192 (454)
.- ...+.+++..+. ..+++++|||+|++|+|+|..+. |.+|+++++.+++++. +++++.+.+.+.+.+
T Consensus 169 ~~-~~~~~~~~~~l~---~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~----- 238 (479)
T 2hqm_A 169 FE-LGTDSDGFFRLE---EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK-FDECIQNTITDHYVK----- 238 (479)
T ss_dssp GG-GSBCHHHHHHCS---SCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHH-----
T ss_pred cc-cccchHHHhccc---ccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc-cCHHHHHHHHHHHHh-----
Confidence 21 123444444432 24899999999999999999986 9999999999998875 788888888777755
Q ss_pred hhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC-cEEecCEEEEee
Q psy1545 193 PETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG-HTHACDIVVSAI 271 (454)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g-~~~~~D~vi~a~ 271 (454)
.||++++++.|++++.+++ +..+.+.+++| +++++|.|++|+
T Consensus 239 ------------------------------------~Gv~i~~~~~v~~i~~~~~-~~~~~v~~~~G~~~i~~D~vv~a~ 281 (479)
T 2hqm_A 239 ------------------------------------EGINVHKLSKIVKVEKNVE-TDKLKIHMNDSKSIDDVDELIWTI 281 (479)
T ss_dssp ------------------------------------HTCEEECSCCEEEEEECC--CCCEEEEETTSCEEEEESEEEECS
T ss_pred ------------------------------------CCeEEEeCCEEEEEEEcCC-CcEEEEEECCCcEEEEcCEEEECC
Confidence 8999999999999987542 11367888899 889999999999
Q ss_pred ccCcCcccc-cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC--
Q psy1545 272 GVVPNSNIQ-VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV-- 348 (454)
Q Consensus 272 G~~p~~~~~-~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~-- 348 (454)
|++|+.. + ++..|++++++|+|.||+++||+.|+|||+|||++. +++++.|..||++||.||++..
T Consensus 282 G~~p~~~-l~l~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~----------~~~~~~A~~~g~~aa~~i~~~~~~ 350 (479)
T 2hqm_A 282 GRKSHLG-MGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDVVGK----------VELTPVAIAAGRKLSNRLFGPEKF 350 (479)
T ss_dssp CEEECCC-SSGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGTTS----------SCCHHHHHHHHHHHHHHHHSCGGG
T ss_pred CCCCccc-cChhhcCceECCCCCEeECCCCccCCCCEEEEEecCCC----------cccHHHHHHHHHHHHHHhcCCCcc
Confidence 9999996 6 678889998889999999999999999999999764 3578899999999999999753
Q ss_pred -CCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC----CceEEEe----------ecCCccEEEEEEE--CCeEE
Q psy1545 349 -KNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN----DYEILLR----------VTRGEEYIKLVMK--DGRMQ 411 (454)
Q Consensus 349 -~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~----~~~~~~~----------~~~~~~~~k~~~~--~~~i~ 411 (454)
.....+..+|..+|+ +++++.+|+++.++... .+++... .....+|+|++++ +++|+
T Consensus 351 ~~~~~~~~~~p~~~~~------~~~~~~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~il 424 (479)
T 2hqm_A 351 RNDKLDYENVPSVIFS------HPEAGSIGISEKEAIEKYGKENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPNEKVV 424 (479)
T ss_dssp TTCCCCCTTCCEEECC------SSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEE
T ss_pred CcccCCCCCCCeEEEC------CCCeEEEeCCHHHHHhcCCCCcEEEEEEeccHHHHHhhcCCCcEEEEEEEECCCCEEE
Confidence 111112224444444 44899999998765422 1332210 1235689999994 79999
Q ss_pred EEEEEcCCc--hHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 412 GAVLIGETE--IEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 412 G~~~~g~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
|+|++|+.. .++.++.+|++++|++++.+. .++++++.+
T Consensus 425 G~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~-~~~hPt~~e 465 (479)
T 2hqm_A 425 GLHIVGDSSAEILQGFGVAIKMGATKADFDNC-VAIHPTSAE 465 (479)
T ss_dssp EEEEESTTHHHHHHHHHHHHHTTCBHHHHHTS-CCCSSCSGG
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC-cCCCCChHH
Confidence 999999873 478889999999999999765 556666655
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-51 Score=410.09 Aligned_cols=382 Identities=18% Similarity=0.214 Sum_probs=286.8
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc-cccccccc--------------------cc-----cc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV-TKTVPVTK--------------------LL-----SD 54 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~-~~~~~~~~--------------------~~-----~~ 54 (454)
|++||+|||||+||++||..|++. |.+|+|||+++.+++. .++...+. .+ ..
T Consensus 1 ~~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 78 (468)
T 2qae_A 1 NPYDVVVIGGGPGGYVASIKAAQL--GMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVT 78 (468)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCE
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence 679999999999999999999998 8999999999655432 22111000 00 00
Q ss_pred cchhh--------------hHHHHHhc-CcEEEcceEEEEeCcccEEEeccC--cEEEecEEEEecCCCCCCCCCCC-ce
Q psy1545 55 ITVEE--------------TDANKFEG-LCTVIVDTVAAIDPRVNCVITEKQ--NRIKYKTLCICTGASPRKIWYSP-HV 116 (454)
Q Consensus 55 ~~~~~--------------~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lviAtG~~p~~~~~~~-~~ 116 (454)
.++.. .....+.+ +++++.+++..++++...|.+.+| ..+.||+||+|||++|+.|++++ ..
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~~g~~~ 158 (468)
T 2qae_A 79 MDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDE 158 (468)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBTTBCCCS
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCCCCCCCc
Confidence 11110 01123334 899998888888887777777677 68999999999999998887761 11
Q ss_pred eeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHh-hccCCCCh
Q psy1545 117 ITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSI-NKTNTAKP 193 (454)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l-~~~~~~~~ 193 (454)
..+.+.+++..+.+ .+++++|||+|++|+|+|..+. |.+|+++++.+++++. +++++.+.+.+.+ .+
T Consensus 159 ~~v~t~~~~~~~~~---~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~------ 228 (468)
T 2qae_A 159 KVVLSSTGALALPR---VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT-LDEDVTNALVGALAKN------ 228 (468)
T ss_dssp SSEECHHHHHTCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHH------
T ss_pred CceechHHHhhccc---CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc-CCHHHHHHHHHHHhhc------
Confidence 13445555554432 4899999999999999999986 9999999999999884 7888888877777 65
Q ss_pred hhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec--CC--cEEecCEEEE
Q psy1545 194 ETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT--NG--HTHACDIVVS 269 (454)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~--~g--~~~~~D~vi~ 269 (454)
.||+++++++|++++.+++ .+.+.++ +| +++++|.|++
T Consensus 229 -----------------------------------~gv~i~~~~~v~~i~~~~~---~~~v~~~~~~g~~~~i~~D~vv~ 270 (468)
T 2qae_A 229 -----------------------------------EKMKFMTSTKVVGGTNNGD---SVSLEVEGKNGKRETVTCEALLV 270 (468)
T ss_dssp -----------------------------------TCCEEECSCEEEEEEECSS---SEEEEEECC---EEEEEESEEEE
T ss_pred -----------------------------------CCcEEEeCCEEEEEEEcCC---eEEEEEEcCCCceEEEECCEEEE
Confidence 8999999999999987653 3556665 66 6799999999
Q ss_pred eeccCcCcccc--cCCCCceecCCCceEeccccccccCceeecCcccc-cCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 270 AIGVVPNSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCT-PSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 270 a~G~~p~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~-~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
|+|++|+.+ + ++..+++++++|+|.||+++||+.|+|||+|||+. . +++++.|..||++||.||++
T Consensus 271 a~G~~p~~~-~l~l~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~----------~~~~~~A~~~g~~aa~~i~~ 339 (468)
T 2qae_A 271 SVGRRPFTG-GLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDVVDKG----------PMLAHKAEDEGVACAEILAG 339 (468)
T ss_dssp CSCEEECCT-TSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGBSSS----------CSCHHHHHHHHHHHHHHHTT
T ss_pred CCCcccCCC-CCCchhcCCccCCCCCEeECCCcccCCCCEEEeeccCCCC----------CccHhHHHHHHHHHHHHHcC
Confidence 999999998 6 55667888878999999999999999999999997 3 36788999999999999997
Q ss_pred CCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCC--ceEEEe----------ecCCccEEEEEEE--CCeEEE
Q psy1545 347 AVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEND--YEILLR----------VTRGEEYIKLVMK--DGRMQG 412 (454)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~--~~~~~~----------~~~~~~~~k~~~~--~~~i~G 412 (454)
... ...+..+|+. .+++.+++++|+++.++...+ +.+... .....+|+|++++ +++|+|
T Consensus 340 ~~~-~~~~~~~p~~------~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG 412 (468)
T 2qae_A 340 KPG-HVNYGVIPAV------IYTMPEVASVGKSEDELKKEGVAYKVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILG 412 (468)
T ss_dssp CCC-CCCTTSCCEE------ECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEE
T ss_pred CCc-cCCCCCCCEE------EECCCceEEEeCCHHHHHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEE
Confidence 421 1111123333 345569999999987764333 322211 1235689999994 899999
Q ss_pred EEEEcCC--chHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 413 AVLIGET--EIEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 413 ~~~~g~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
+|++|+. +.++.+..+|++++|++++.+. .++++++.+
T Consensus 413 ~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~-~~~~Pt~~e 452 (468)
T 2qae_A 413 VHIVCTTAGELIGEACLAMEYGASSEDVGRT-CHAHPTMSE 452 (468)
T ss_dssp EEEEETTHHHHHHHHHHHHHTTCBHHHHHTS-CCCSSCTHH
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCHHHHhhc-ccCCCCHHH
Confidence 9999998 4689999999999999999765 445555443
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-51 Score=412.45 Aligned_cols=383 Identities=20% Similarity=0.221 Sum_probs=286.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc-cccccccc---------------------ccc----cc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV-TKTVPVTK---------------------LLS----DI 55 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~-~~~~~~~~---------------------~~~----~~ 55 (454)
++||+|||||+||++||..|++. |.+|+|||+++.+++. .++...+. .+. ..
T Consensus 6 ~~dvvIIGgG~aGl~aA~~l~~~--g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (474)
T 1zmd_A 6 DADVTVIGSGPGGYVAAIKAAQL--GFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRL 83 (474)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCcc
Confidence 58999999999999999999998 8999999999654432 11110000 000 01
Q ss_pred chhh--------------hHHHHHhc-CcEEEcceEEEEeCcccEEEecc-C-cEEEecEEEEecCCCCCCCCCCC-cee
Q psy1545 56 TVEE--------------TDANKFEG-LCTVIVDTVAAIDPRVNCVITEK-Q-NRIKYKTLCICTGASPRKIWYSP-HVI 117 (454)
Q Consensus 56 ~~~~--------------~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~-g-~~i~~d~lviAtG~~p~~~~~~~-~~~ 117 (454)
++.. .....+.+ +++++.+++..++++...|.+.+ + +++.||+||+|||++|+.|++++ ...
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i~g~~~~ 163 (474)
T 1zmd_A 84 NLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDED 163 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCTTCCCCSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCCCCCCcC
Confidence 1110 01223334 89999988888887766777666 4 57999999999999999888761 111
Q ss_pred eeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhh
Q psy1545 118 TIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPET 195 (454)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~ 195 (454)
.+.+.+++..+.+ .+++++|||+|++|+|+|..+. |.+|+++++.++++++.+++++.+.+.+.+.+
T Consensus 164 ~v~t~~~~~~~~~---~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~-------- 232 (474)
T 1zmd_A 164 TIVSSTGALSLKK---VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQK-------- 232 (474)
T ss_dssp SEECHHHHTTCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHH--------
T ss_pred cEEcHHHHhhccc---cCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHH--------
Confidence 2345555544322 3799999999999999999986 99999999999998855788888888777755
Q ss_pred hhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEe-----cCCcEEecCEEEEe
Q psy1545 196 IFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL-----TNGHTHACDIVVSA 270 (454)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~-----~~g~~~~~D~vi~a 270 (454)
.||++++++.|++++.+++ ..+.+.+ .+++++++|.|++|
T Consensus 233 ---------------------------------~Gv~i~~~~~v~~i~~~~~--~~~~v~~~~~~~~~~~~i~~D~vv~a 277 (474)
T 1zmd_A 233 ---------------------------------QGFKFKLNTKVTGATKKSD--GKIDVSIEAASGGKAEVITCDVLLVC 277 (474)
T ss_dssp ---------------------------------TTCEEECSEEEEEEEECTT--SCEEEEEEETTSCCCEEEEESEEEEC
T ss_pred ---------------------------------CCCEEEeCceEEEEEEcCC--ceEEEEEEecCCCCceEEEcCEEEEC
Confidence 8999999999999987653 1245553 45678999999999
Q ss_pred eccCcCcccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 271 IGVVPNSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 271 ~G~~p~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
+|++|+.+ + ++..+++++++|+|.||+++||+.|+|||+|||+..+ ++++.|..||++||.||++..
T Consensus 278 ~G~~p~~~-~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~ 346 (474)
T 1zmd_A 278 IGRRPFTK-NLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP----------MLAHKAEDEGIICVEGMAGGA 346 (474)
T ss_dssp SCEEECCT-TSSHHHHTCCCCTTSCCCCCTTCBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCcCCC-cCCchhcCCccCCCCCEEECcCCccCCCCEEEeeecCCCC----------ccHHHHHHHHHHHHHHhcCCC
Confidence 99999998 6 5566788888899999999999999999999998743 578899999999999999752
Q ss_pred CCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC--CceEEEe----------ecCCccEEEEEEE--CCeEEEEE
Q psy1545 349 KNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN--DYEILLR----------VTRGEEYIKLVMK--DGRMQGAV 414 (454)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~--~~~~~~~----------~~~~~~~~k~~~~--~~~i~G~~ 414 (454)
. ...+..+|+.+ +++.+++++|+++.++... .+.+... .....+|+|++++ +++|+|+|
T Consensus 347 ~-~~~~~~~p~~~------~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~ 419 (474)
T 1zmd_A 347 V-HIDYNCVPSVI------YTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAH 419 (474)
T ss_dssp C-CCCGGGCCEEE------CSSSEEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEE
T ss_pred C-cCCCCCCCEEE------ECCCCeEEEeCCHHHHHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEE
Confidence 1 11122334443 4455999999998775433 3332211 1235689999995 89999999
Q ss_pred EEcCC--chHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 415 LIGET--EIEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 415 ~~g~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
++|+. +.++.++.+|++++|++++.+ +.++++++.+
T Consensus 420 ~~g~~a~~~i~~~~~ai~~~~~~~~l~~-~~~~~Pt~~e 457 (474)
T 1zmd_A 420 ILGPGAGEMVNEAALALEYGASCEDIAR-VCHAHPTLSE 457 (474)
T ss_dssp EEETTHHHHHHHHHHHHHHTCBHHHHHH-SCCCTTCTHH
T ss_pred EECCCHHHHHHHHHHHHHCCCCHHHHhh-CcCCCCCHHH
Confidence 99998 458899999999999999976 4555555544
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-51 Score=410.15 Aligned_cols=382 Identities=18% Similarity=0.195 Sum_probs=288.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc-ccccccc------------------ccccchh----
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK-TVPVTKL------------------LSDITVE---- 58 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~-~~~~~~~------------------~~~~~~~---- 58 (454)
++||+|||||+||++||..|++. |.+|+|||+.+.+++.+. ..+.+.. ...+++.
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~~--G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAKA--KYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQD 81 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhC--CCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHH
Confidence 48999999999999999999998 899999997766554322 2111100 0001110
Q ss_pred --h--------hHHH-HHhc-CcEEEcceEEEEeCcccEEEeccCcE--EEecEEEEecCCCCCCCCCCCceeeeeccch
Q psy1545 59 --E--------TDAN-KFEG-LCTVIVDTVAAIDPRVNCVITEKQNR--IKYKTLCICTGASPRKIWYSPHVITIRDTDS 124 (454)
Q Consensus 59 --~--------~~~~-~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~~--i~~d~lviAtG~~p~~~~~~~~~~~~~~~~~ 124 (454)
. .... .+.+ +++++.+++..++++...|.+.+|+. +.||+||+|||++|+.|++++.- .+.+.++
T Consensus 82 ~~~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~-~~~t~~~ 160 (466)
T 3l8k_A 82 RKDYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVE-YCLTSDD 160 (466)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCCCCTTGG-GSBCHHH
T ss_pred HHHhheeccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccCCCCCCcc-ceEeHHH
Confidence 0 1111 2233 89999999999999888888878888 99999999999999998887211 3455566
Q ss_pred HHHHHHHh-hcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcc
Q psy1545 125 VAVLQEKL-KSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMR 201 (454)
Q Consensus 125 ~~~l~~~~-~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~ 201 (454)
+..+.+.+ ..+++++|||+|++|+|+|..+. |.+|+++++.+++++.++++++.+.+.+.+
T Consensus 161 ~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l---------------- 224 (466)
T 3l8k_A 161 IFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSIL---------------- 224 (466)
T ss_dssp HHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcC----------------
Confidence 65322211 24799999999999999999986 999999999999988644777777665554
Q ss_pred cccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec--CCc--EEecCEEEEeeccCcCc
Q psy1545 202 YNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT--NGH--THACDIVVSAIGVVPNS 277 (454)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~--~g~--~~~~D~vi~a~G~~p~~ 277 (454)
. |++++++.+++++..++ ..+.+.++ +|+ ++++|.|++|+|++|+.
T Consensus 225 ---------------------------~-v~i~~~~~v~~i~~~~~--~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~ 274 (466)
T 3l8k_A 225 ---------------------------K-LNIKFNSPVTEVKKIKD--DEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVI 274 (466)
T ss_dssp ---------------------------C-CCEECSCCEEEEEEEET--TEEEEEECCTTSCCEEEEESCEEECCCEEECC
T ss_pred ---------------------------E-EEEEECCEEEEEEEcCC--CcEEEEEEecCCceEEEEcCEEEECcCCCccc
Confidence 2 99999999999987541 14567777 665 89999999999999999
Q ss_pred ccc-cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC--CCCCcce
Q psy1545 278 NIQ-VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA--VKNEPVI 354 (454)
Q Consensus 278 ~~~-~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~--~~~~~~~ 354 (454)
+ + ++..|++++++| |.||+++||+.|+|||+|||++. +++++.|..||++||.||++. ......+
T Consensus 275 ~-l~l~~~gl~~~~~G-i~vd~~~~t~~~~Iya~GD~~~~----------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~ 342 (466)
T 3l8k_A 275 P-EGAREIGLSISKTG-IVVDETMKTNIPNVFATGDANGL----------APYYHAAVRMSIAAANNIMANGMPVDYVDV 342 (466)
T ss_dssp C-TTTGGGTCCBCSSS-BCCCTTCBCSSTTEEECGGGTCS----------CCSHHHHHHHHHHHHHHHHTTTSCCCCCCS
T ss_pred c-cchhhcCceeCCCC-EeECCCccCCCCCEEEEEecCCC----------CccHhHHHHHHHHHHHHHhCCCCCccccCC
Confidence 7 5 777889998889 99999999999999999999975 368899999999999999975 2222223
Q ss_pred eccceeeeeeeeeecCeEEEEeecccCCcCCCCc--eEEEe----------ecCCccEEEEEEE--CCeEEEEEEEcCCc
Q psy1545 355 QDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDY--EILLR----------VTRGEEYIKLVMK--DGRMQGAVLIGETE 420 (454)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~--~~~~~----------~~~~~~~~k~~~~--~~~i~G~~~~g~~~ 420 (454)
..+|+.+|+ +.+++++|+++.++...++ .+... .....+|+|++++ +++|+|+|++|+..
T Consensus 343 ~~~p~~~~~------~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a 416 (466)
T 3l8k_A 343 KSIPVTIYT------IPSLSYVGILPSKARKMGIEIVEAEYNMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHS 416 (466)
T ss_dssp TTSCEEECS------SSCEEEEECCHHHHHHHTCCEEEEEEEGGGSHHHHHHTCCCCEEEEEEETTTCBEEEEEEESTTH
T ss_pred CCCcEEEEC------CCCeEEecCCHHHHHhCCCCEEEEEEEcccChhheecCCCeEEEEEEEECCCCEEEEEEEECCCH
Confidence 334555554 4489999999987653333 22211 1235789999994 79999999999983
Q ss_pred --hHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 421 --IEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 421 --~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
.++.++.+|++++|++||.+. .++++++.+
T Consensus 417 ~e~i~~~~~ai~~~~t~~~l~~~-~~~~Pt~~e 448 (466)
T 3l8k_A 417 QYLINELGLAVAYGLNAKQLASF-AEQHPSTNE 448 (466)
T ss_dssp HHHHHHHHHHHHTTCBHHHHHHC-CCCTTSTTH
T ss_pred HHHHHHHHHHHHCcCCHHHHhcc-ccCCCChHH
Confidence 578999999999999999776 444555443
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=413.00 Aligned_cols=393 Identities=20% Similarity=0.288 Sum_probs=302.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc-ccc-ccccc-cccchhhhHHHHHh-c-CcEEE-cce
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK-TVP-VTKLL-SDITVEETDANKFE-G-LCTVI-VDT 75 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~-~~~-~~~~~-~~~~~~~~~~~~~~-~-~i~~~-~~~ 75 (454)
++||+|||||+||++||..|++.+++.+|+|||+++.+++... .+. ..... ..........+.+. + +++++ ..+
T Consensus 36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~~ 115 (588)
T 3ics_A 36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLSE 115 (588)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSEE
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECCE
Confidence 5799999999999999999999878899999999987653221 111 11111 11112223344443 3 89986 569
Q ss_pred EEEEeCcccEEEec---cCc--EEEecEEEEecCCCCCCCCCC-----CceeeeeccchHHHHHHHh--hcCCeEEEEcC
Q psy1545 76 VAAIDPRVNCVITE---KQN--RIKYKTLCICTGASPRKIWYS-----PHVITIRDTDSVAVLQEKL--KSAKKIVVIGN 143 (454)
Q Consensus 76 v~~i~~~~~~v~~~---~g~--~i~~d~lviAtG~~p~~~~~~-----~~~~~~~~~~~~~~l~~~~--~~~~~vvVvG~ 143 (454)
|+.++.+.+.+.+. +++ .+.||+||+|||++|+.|+++ .+++...+..++..+...+ ..+++++|||+
T Consensus 116 V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGg 195 (588)
T 3ics_A 116 VVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGG 195 (588)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTTCTTEEECSSHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred EEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCCCCCcccCCCeEEeCCHHHHHHHHHHHhhcCCCeEEEECC
Confidence 99999988888764 455 789999999999999888776 3456666666666665544 25899999999
Q ss_pred chhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccc
Q psy1545 144 GGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVN 221 (454)
Q Consensus 144 G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (454)
|++|+|+|..+. |.+|+++++.+++++. +++++.+.+.+.+.+
T Consensus 196 G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~---------------------------------- 240 (588)
T 3ics_A 196 GFIGVEMVENLRERGIEVTLVEMANQVMPP-IDYEMAAYVHEHMKN---------------------------------- 240 (588)
T ss_dssp SHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHH----------------------------------
T ss_pred CHHHHHHHHHHHhCCCeEEEEecCCccccc-CCHHHHHHHHHHHHH----------------------------------
Confidence 999999999986 9999999999999886 788888888777755
Q ss_pred cccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccc
Q psy1545 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQ 301 (454)
Q Consensus 222 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~ 301 (454)
.||++++++.|++++.+++ .+.+++|+++++|.||+|+|++|+.+ +++..|++++++|+|.||+++|
T Consensus 241 -------~GV~i~~~~~v~~i~~~~~-----~v~~~~g~~i~~D~Vi~a~G~~p~~~-~l~~~g~~~~~~g~i~vd~~~~ 307 (588)
T 3ics_A 241 -------HDVELVFEDGVDALEENGA-----VVRLKSGSVIQTDMLILAIGVQPESS-LAKGAGLALGVRGTIKVNEKFQ 307 (588)
T ss_dssp -------TTCEEECSCCEEEEEGGGT-----EEEETTSCEEECSEEEECSCEEECCH-HHHHTTCCBCGGGCBCCCTTSB
T ss_pred -------cCCEEEECCeEEEEecCCC-----EEEECCCCEEEcCEEEEccCCCCChH-HHHhcCceEcCCCCEEECCccc
Confidence 8999999999999987542 47788999999999999999999998 8888889998899999999999
Q ss_pred cccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC-CCCCCcceeccceeeeeeeeeecCeEEEEeeccc
Q psy1545 302 TSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG-AVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFN 380 (454)
Q Consensus 302 t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~ 380 (454)
|+.|+|||+|||+..+....+.+..+++++.|..||++||+||++ ... .++..+.+...++++++++++|+++
T Consensus 308 t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~------~~~~~~~~~~~~~~~~~~a~vGlte 381 (588)
T 3ics_A 308 TSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDS------LYKGTLGTSVAKVFDLTVATTGLNE 381 (588)
T ss_dssp CSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCSS------CCCCBCCCEEEEETTEEEEEEECCH
T ss_pred cCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhcCCCcc------ccCCcccceEEEECCeEEEEecCCH
Confidence 999999999999975443333333467899999999999999997 321 1222223334467788999999999
Q ss_pred CCcCCC--CceEEE-e--------ecCCccEEEEEE--ECCeEEEEEEEcCC---chHHHHHHHHhcCCCcchhhhhcc-
Q psy1545 381 GQTLEN--DYEILL-R--------VTRGEEYIKLVM--KDGRMQGAVLIGET---EIEEMCENLILNQLDLTDIADDLL- 443 (454)
Q Consensus 381 ~~~~~~--~~~~~~-~--------~~~~~~~~k~~~--~~~~i~G~~~~g~~---~~~~~~~~~i~~~~~~~~~~~~~~- 443 (454)
.++... .+.+.. . .....+|+|+++ ++++|||+|++|+. +.++.++.+|++++|++||.+..+
T Consensus 382 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~ilG~~~~g~~~~~e~i~~~~~ai~~~~t~~~l~~~~~~ 461 (588)
T 3ics_A 382 KILKRLNIPYEVVHVQANSHAGYYPNATPVLIKLIFNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVLDLPDLELS 461 (588)
T ss_dssp HHHHHTTCCCEEEEEEEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBTTTGGGCCCC
T ss_pred HHHHHcCCCeEEEEEecCCccccCCCCceEEEEEEEECCCCeEEEEEEEcCCcHHHHHHHHHHHHHcCCCHHHhhhhhhc
Confidence 776433 232211 0 012458999999 58999999999975 358899999999999999977643
Q ss_pred -CCCCC
Q psy1545 444 -NPNID 448 (454)
Q Consensus 444 -~~~~~ 448 (454)
.|.++
T Consensus 462 ~~P~~~ 467 (588)
T 3ics_A 462 YAPPYS 467 (588)
T ss_dssp CSTTTC
T ss_pred cCCCcc
Confidence 36654
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-50 Score=408.88 Aligned_cols=380 Identities=19% Similarity=0.212 Sum_probs=283.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc-cccccccc---------------------ccc--cccch
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA-VTKTVPVT---------------------KLL--SDITV 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~-~~~~~~~~---------------------~~~--~~~~~ 57 (454)
++||+|||||+||+++|..|++. |.+|+|||+++.+++ +.+....+ ... ...++
T Consensus 6 ~~dVvIIGaG~aGl~aA~~l~~~--G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~ 83 (482)
T 1ojt_A 6 EYDVVVLGGGPGGYSAAFAAADE--GLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDI 83 (482)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCH
T ss_pred cCCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCH
Confidence 58999999999999999999998 899999999655432 21111000 000 00111
Q ss_pred h---h-----------hHHHHHhc-CcEEEcceEEEEeCcccEEEeccC------------cEEEecEEEEecCCCCCCC
Q psy1545 58 E---E-----------TDANKFEG-LCTVIVDTVAAIDPRVNCVITEKQ------------NRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 58 ~---~-----------~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g------------~~i~~d~lviAtG~~p~~~ 110 (454)
. . .....+.+ +++++.+++..++.+...+.+.+| .+++||+||+|||++|+.|
T Consensus 84 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~~~ 163 (482)
T 1ojt_A 84 DMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKL 163 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCCCC
Confidence 0 0 01122333 899998877777765545554455 5799999999999999887
Q ss_pred C-CCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhc
Q psy1545 111 W-YSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINK 187 (454)
Q Consensus 111 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~ 187 (454)
+ ++... .+.+.+++..+.+ .+++++|||+|++|+|+|..|. |.+|+++++.+++++. +++++.+.+.+.+.+
T Consensus 164 ~~i~~~~-~v~~~~~~~~~~~---~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~ 238 (482)
T 1ojt_A 164 PFIPEDP-RIIDSSGALALKE---VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQKQNEY 238 (482)
T ss_dssp SSCCCCT-TEECHHHHTTCCC---CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHGG
T ss_pred CCCCccC-cEEcHHHHhcccc---cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-cCHHHHHHHHHHHHh
Confidence 7 54111 2445555544332 3899999999999999999986 9999999999999885 788888888777754
Q ss_pred cCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC----CcEEe
Q psy1545 188 TNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN----GHTHA 263 (454)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~----g~~~~ 263 (454)
.||++++++.+.+++.+++ .+.+.+++ |++++
T Consensus 239 -----------------------------------------~gV~i~~~~~v~~i~~~~~---~~~v~~~~~~~~g~~~~ 274 (482)
T 1ojt_A 239 -----------------------------------------RFDNIMVNTKTVAVEPKED---GVYVTFEGANAPKEPQR 274 (482)
T ss_dssp -----------------------------------------GEEEEECSCEEEEEEEETT---EEEEEEESSSCCSSCEE
T ss_pred -----------------------------------------cCCEEEECCEEEEEEEcCC---eEEEEEeccCCCceEEE
Confidence 8999999999999987543 45677776 77899
Q ss_pred cCEEEEeeccCcCcccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHH
Q psy1545 264 CDIVVSAIGVVPNSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAA 341 (454)
Q Consensus 264 ~D~vi~a~G~~p~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa 341 (454)
+|.|++|+|++|+.+ + ++..+++++++|+|.||+++||+.|+|||+|||+..+ ++++.|..||++||
T Consensus 275 ~D~vv~a~G~~p~~~-~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa 343 (482)
T 1ojt_A 275 YDAVLVAAGRAPNGK-LISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQP----------MLAHKAVHEGHVAA 343 (482)
T ss_dssp ESCEEECCCEEECGG-GTTGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSS----------CCHHHHHHHHHHHH
T ss_pred cCEEEECcCCCcCCC-CCChhhcCceeCCCCCEeeCCCcccCCCCEEEEEcccCCC----------ccHHHHHHHHHHHH
Confidence 999999999999998 6 5777888888899999999999999999999999743 67889999999999
Q ss_pred hhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCC--ceEEEe----------ecCCccEEEEEE--EC
Q psy1545 342 KCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEND--YEILLR----------VTRGEEYIKLVM--KD 407 (454)
Q Consensus 342 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~--~~~~~~----------~~~~~~~~k~~~--~~ 407 (454)
.||++... ...+...|+.+ +++++++++|+++.++...+ +.+... .....+|+|+++ ++
T Consensus 344 ~~i~g~~~-~~~~~~~p~~~------~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 416 (482)
T 1ojt_A 344 ENCAGHKA-YFDARVIPGVA------YTSPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAET 416 (482)
T ss_dssp HHHTTCCC-CCCCCCCCEEE------CSSSCEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTT
T ss_pred HHHcCCCc-cCCCCCCCEEE------EcCCCeEEEeCCHHHHHhcCCCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCC
Confidence 99997421 11112233333 44559999999987765333 222211 123568999999 58
Q ss_pred CeEEEEEEEcCC--chHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 408 GRMQGAVLIGET--EIEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 408 ~~i~G~~~~g~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
++|+|+|++|+. +.++.++.+|++++|++++.+. .++++++.+
T Consensus 417 ~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~-~~~~Pt~~e 461 (482)
T 1ojt_A 417 GRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKT-IHPHPTLGE 461 (482)
T ss_dssp CBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTS-CCCSSSSTT
T ss_pred CEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC-ccCCCCHHH
Confidence 999999999998 4688999999999999999765 444444444
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-50 Score=405.06 Aligned_cols=379 Identities=18% Similarity=0.232 Sum_probs=285.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccc---------------c-----c----cccch
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTK---------------L-----L----SDITV 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~---------------~-----~----~~~~~ 57 (454)
++||+|||||++|+++|..|++. +.+|+|||+++..+.|.+..+.+. . + ...++
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~--g~~V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 81 (450)
T 1ges_A 4 HYDYIAIGGGSGGIASINRAAMY--GQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNW 81 (450)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTT--TCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHhC--CCeEEEEcCCCCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence 58999999999999999999997 899999999865544332211000 0 0 00111
Q ss_pred h----------h----hHHHHHhc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCCCceeeeecc
Q psy1545 58 E----------E----TDANKFEG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSPHVITIRDT 122 (454)
Q Consensus 58 ~----------~----~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~~~~~~~~~~ 122 (454)
. . .....+.+ +++++.++++.+++. .|.+ +++.+.||+||||||++|+.|++++. ..+.+.
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~--~v~~-~g~~~~~d~lviAtGs~p~~p~i~g~-~~~~~~ 157 (450)
T 1ges_A 82 ETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAK--TLEV-NGETITADHILIATGGRPSHPDIPGV-EYGIDS 157 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETT--EEEE-TTEEEEEEEEEECCCEEECCCCSTTG-GGSBCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCC--EEEE-CCEEEEeCEEEECCCCCCCCCCCCCc-cceecH
Confidence 0 0 01112233 899999888888764 5666 67789999999999999998887732 123344
Q ss_pred chHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhc
Q psy1545 123 DSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRM 200 (454)
Q Consensus 123 ~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~ 200 (454)
+++..+. ..+++++|||+|++|+|+|..|. |.+|+++++.+++++. +++++.+.+.+.+.+
T Consensus 158 ~~~~~~~---~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~------------- 220 (450)
T 1ges_A 158 DGFFALP---ALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMISETLVEVMNA------------- 220 (450)
T ss_dssp HHHHHCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH-------------
T ss_pred HHhhhhh---hcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhh-hhHHHHHHHHHHHHH-------------
Confidence 5554433 24899999999999999999986 9999999999998874 788877777777755
Q ss_pred ccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccc
Q psy1545 201 RYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQ 280 (454)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~ 280 (454)
.||++++++.+++++.+++ ..+.+.+++|+++++|.|++|+|++|+.+ +
T Consensus 221 ----------------------------~Gv~i~~~~~v~~i~~~~~--~~~~v~~~~g~~i~~D~vv~a~G~~p~~~-~ 269 (450)
T 1ges_A 221 ----------------------------EGPQLHTNAIPKAVVKNTD--GSLTLELEDGRSETVDCLIWAIGREPAND-N 269 (450)
T ss_dssp ----------------------------HSCEEECSCCEEEEEECTT--SCEEEEETTSCEEEESEEEECSCEEESCT-T
T ss_pred ----------------------------CCCEEEeCCEEEEEEEeCC--cEEEEEECCCcEEEcCEEEECCCCCcCCC-C
Confidence 8999999999999987542 23678888998999999999999999987 4
Q ss_pred --cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC-cceecc
Q psy1545 281 --VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE-PVIQDF 357 (454)
Q Consensus 281 --~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~-~~~~~~ 357 (454)
++..|++++++|+|.||+++||+.|+|||+|||++. +++++.|..||+.+|.||++..... ..+..+
T Consensus 270 l~~~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~----------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~ 339 (450)
T 1ges_A 270 INLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGA----------VELTPVAVAAGRRLSERLFNNKPDEHLDYSNI 339 (450)
T ss_dssp SCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTS----------CCCHHHHHHHHHHHHHHHHTTCTTCCCCCSSC
T ss_pred CCchhcCceECCCCCEeECCCCccCCCCEEEEeccCCC----------CccHHHHHHHHHHHHHHHcCCCCcccCCCCCC
Confidence 455678888889999999999999999999999864 3578899999999999999743211 122234
Q ss_pred ceeeeeeeeeecCeEEEEeecccCCcCCC----CceEEE----------eecCCccEEEEEE--ECCeEEEEEEEcCCc-
Q psy1545 358 SFEMFTHMTKFFGYKVILLGLFNGQTLEN----DYEILL----------RVTRGEEYIKLVM--KDGRMQGAVLIGETE- 420 (454)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~vG~~~~~~~~~----~~~~~~----------~~~~~~~~~k~~~--~~~~i~G~~~~g~~~- 420 (454)
|..+|+. .+++++|+++.++... .+++.. ......+|+|+++ ++++|+|+|++|+..
T Consensus 340 p~~~~~~------~~~a~vG~~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~ 413 (450)
T 1ges_A 340 PTVVFSH------PPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMD 413 (450)
T ss_dssp CEEECCS------SCEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHH
T ss_pred CeEEECC------CceEEEeCCHHHHHhcCCCCcEEEEEEECchhhHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHH
Confidence 4445544 4899999988765432 233221 0123568999999 489999999999873
Q ss_pred -hHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 421 -IEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 421 -~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
.++.++.+|++++|++|+.+. .++++++.+
T Consensus 414 ~~i~~~~~ai~~~~t~~~l~~~-~~~hPt~~e 444 (450)
T 1ges_A 414 EMLQGFAVALKMGATKKDFDNT-VAIHPTAAE 444 (450)
T ss_dssp HHHHHHHHHHHTTCBHHHHHTS-CCCSSCSGG
T ss_pred HHHHHHHHHHHCCCCHHHHhcC-ccCCCChHH
Confidence 578999999999999999665 556666655
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=411.52 Aligned_cols=390 Identities=19% Similarity=0.262 Sum_probs=276.3
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccc-------------------cc---cccchh
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTK-------------------LL---SDITVE 58 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~-------------------~~---~~~~~~ 58 (454)
|++||+|||||+||++||..|++. +.+|+|||+++..+.|.+..+.+. .+ ...++.
T Consensus 1 m~~dVvIIGgG~aGl~aA~~l~~~--g~~V~liE~~~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (500)
T 1onf_A 1 MVYDLIVIGGGSGGMAAARRAARH--NAKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLP 78 (500)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHH
T ss_pred CccCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHH
Confidence 789999999999999999999998 899999999976544433211110 00 011111
Q ss_pred ----------hh----HHHHHhc-CcEEEcceEEEEeCcccEEEecc-------------CcEEEecEEEEecCCCCCCC
Q psy1545 59 ----------ET----DANKFEG-LCTVIVDTVAAIDPRVNCVITEK-------------QNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 59 ----------~~----~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~-------------g~~i~~d~lviAtG~~p~~~ 110 (454)
.. ....+.+ +++++.+++..+++. .+.+.+ +..+.||+||||||++|+.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~--~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~p 156 (500)
T 1onf_A 79 LLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSEN--RILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFP 156 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC----------------------------CBSSEEECCCCCBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCC--EEEEEeccccccccccCCCceEEEeCEEEECCCCCCCCC
Confidence 00 1122333 899988877777653 344433 56799999999999999988
Q ss_pred CCCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhcc
Q psy1545 111 WYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKT 188 (454)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~ 188 (454)
+++.. ..+.+.+++..+. .+++++|||+|++|+|+|..|. |.+||++++.+++++. +++++.+.+.+.+.+
T Consensus 157 ~i~G~-~~~~~~~~~~~~~----~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~- 229 (500)
T 1onf_A 157 PVKGI-ENTISSDEFFNIK----ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVINVLENDMKK- 229 (500)
T ss_dssp SCTTG-GGCEEHHHHTTCC----CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHH-
T ss_pred CCCCC-CcccCHHHHhccC----CCCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcc-cchhhHHHHHHHHHh-
Confidence 87722 1123444443332 2899999999999999999986 9999999999999874 788888888887765
Q ss_pred CCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcE-EecCEE
Q psy1545 189 NTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHT-HACDIV 267 (454)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~-~~~D~v 267 (454)
.||++++++.+++++.+++ ..+.+.+++|++ +++|.|
T Consensus 230 ----------------------------------------~gv~i~~~~~v~~i~~~~~--~~~~v~~~~g~~~~~~D~v 267 (500)
T 1onf_A 230 ----------------------------------------NNINIVTFADVVEIKKVSD--KNLSIHLSDGRIYEHFDHV 267 (500)
T ss_dssp ----------------------------------------TTCEEECSCCEEEEEESST--TCEEEEETTSCEEEEESEE
T ss_pred ----------------------------------------CCCEEEECCEEEEEEEcCC--ceEEEEECCCcEEEECCEE
Confidence 8999999999999987542 236788889987 999999
Q ss_pred EEeeccCcCcccc-cCCCCceecCCCceEeccccccccCceeecCcccccCCc-----------------------ccc-
Q psy1545 268 VSAIGVVPNSNIQ-VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWD-----------------------LAK- 322 (454)
Q Consensus 268 i~a~G~~p~~~~~-~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~-----------------------~~~- 322 (454)
++|+|++|+.+.+ ++..++++ ++|+|.||+++||+.|+|||+|||+..+.. ...
T Consensus 268 i~a~G~~p~~~~l~~~~~g~~~-~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 346 (500)
T 1onf_A 268 IYCVGRSPDTENLKLEKLNVET-NNNYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTED 346 (500)
T ss_dssp EECCCBCCTTTTSSCTTTTCCB-SSSCEEECTTCBCSSSSEEECSTTEEEC-----------------------------
T ss_pred EECCCCCcCCCCCCchhcCccc-cCCEEEECCCcccCCCCEEEEeccccccccccccccccccccccccccccccccccc
Confidence 9999999999613 57778888 789999999999999999999999942100 000
Q ss_pred chhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC----CceEEE------
Q psy1545 323 QWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN----DYEILL------ 392 (454)
Q Consensus 323 ~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~----~~~~~~------ 392 (454)
....+++++.|..||++||+||++.......+..+|..+| ++.+++++|+++.++... .+.+..
T Consensus 347 ~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~------~~~~~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~ 420 (500)
T 1onf_A 347 IFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIPTVIF------SHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNL 420 (500)
T ss_dssp -CBCCCCHHHHHHHHHHHHHHHHSCTTCCCCCSSCCEEEC------CSSCEEEEECCHHHHHHHTCGGGEEEEEEEECCG
T ss_pred cCCcccchhHHHHHHHHHHHHHhCCCCccCCCCCCCeEEE------cCcceEEEeCCHHHHHhcCCCccEEEEEEECchh
Confidence 0023578999999999999999974221111222344444 445899999998765422 222211
Q ss_pred --------eecCCccEEEEEE--ECCeEEEEEEEcCCc--hHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 393 --------RVTRGEEYIKLVM--KDGRMQGAVLIGETE--IEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 393 --------~~~~~~~~~k~~~--~~~~i~G~~~~g~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
......+|+|+++ ++++|+|+|++|+.. .++.++.+|++++|++|+.+. .++++++.+
T Consensus 421 ~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~-~~~~Pt~~e 490 (500)
T 1onf_A 421 FFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDET-IPIHPTAAE 490 (500)
T ss_dssp GGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTS-CCCTTCSTT
T ss_pred hhhhccccccCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcc-ccCCCCHHH
Confidence 1123567999999 489999999999973 478999999999999999665 555555554
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-50 Score=406.84 Aligned_cols=379 Identities=17% Similarity=0.227 Sum_probs=288.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccc---------------------c--ccccchh
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTK---------------------L--LSDITVE 58 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~---------------------~--~~~~~~~ 58 (454)
++||+|||||++|+++|..|++. |.+|+|||+....+.|.+..+.+. . ....++.
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~--G~~V~liEk~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAAL--GKKVAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWA 82 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTT--TCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECHH
T ss_pred CCcEEEECcCHHHHHHHHHHHhC--CCEEEEEeCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCHH
Confidence 47999999999999999999998 999999999655443332211100 0 0011111
Q ss_pred ----------hh----HHHHHhc-CcEEEcceEEEEeCcccEEEe-ccCcEEEecEEEEecCCCCC-CCCCCCceeeeec
Q psy1545 59 ----------ET----DANKFEG-LCTVIVDTVAAIDPRVNCVIT-EKQNRIKYKTLCICTGASPR-KIWYSPHVITIRD 121 (454)
Q Consensus 59 ----------~~----~~~~~~~-~i~~~~~~v~~i~~~~~~v~~-~~g~~i~~d~lviAtG~~p~-~~~~~~~~~~~~~ 121 (454)
.. ....+.. +++++.+++.++++. .+.+ .+++.+.||++|+|||++|. .|+++..- .+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~--~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~~-~~~~ 159 (463)
T 4dna_A 83 KLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPN--TVKLLASGKTVTAERIVIAVGGHPSPHDALPGHE-LCIT 159 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSS--EEEETTTTEEEEEEEEEECCCEEECCCTTSTTGG-GCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCC--EEEEecCCeEEEeCEEEEecCCCcccCCCCCCcc-cccc
Confidence 01 1122333 899999988888754 5666 46778999999999999999 88877211 2234
Q ss_pred cchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhh
Q psy1545 122 TDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKR 199 (454)
Q Consensus 122 ~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~ 199 (454)
.+++..+. ..+++++|||+|++|+|+|..+. |.+|+++++.+++++. +++++.+.+.+.+.+
T Consensus 160 ~~~~~~~~---~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~-~~~~~~~~l~~~l~~------------ 223 (463)
T 4dna_A 160 SNEAFDLP---ALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FDQDMRRGLHAAMEE------------ 223 (463)
T ss_dssp HHHHTTCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH------------
T ss_pred HHHHhhhh---cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHHHH------------
Confidence 44444332 24899999999999999999986 9999999999998864 788888888777755
Q ss_pred cccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEE-ecCCcEEecCEEEEeeccCcCcc
Q psy1545 200 MRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVK-LTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 200 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~-~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
.||++++++.|++++.+++ ..+.+. +++|+ +++|.|++|+|++|+..
T Consensus 224 -----------------------------~Gv~i~~~~~v~~i~~~~~--~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~ 271 (463)
T 4dna_A 224 -----------------------------KGIRILCEDIIQSVSADAD--GRRVATTMKHGE-IVADQVMLALGRMPNTN 271 (463)
T ss_dssp -----------------------------TTCEEECSCCEEEEEECTT--SCEEEEESSSCE-EEESEEEECSCEEESCT
T ss_pred -----------------------------CCCEEECCCEEEEEEEcCC--CEEEEEEcCCCe-EEeCEEEEeeCcccCCC
Confidence 8999999999999987653 235788 88887 99999999999999997
Q ss_pred cc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceec
Q psy1545 279 IQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQD 356 (454)
Q Consensus 279 ~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~ 356 (454)
+ ++..|++++++|+|.||+++||+.|+|||+|||++. +++++.|..||+++|+||++.......+..
T Consensus 272 -~l~l~~~g~~~~~~G~i~vd~~~~t~~~~iya~GD~~~~----------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~ 340 (463)
T 4dna_A 272 -GLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTDR----------VQLTPVAIHEAMCFIETEYKNNPTSPDHDL 340 (463)
T ss_dssp -TSSTGGGTCCBCTTSCBCCCTTCBCSSTTEEECSGGGSS----------CCCHHHHHHHHHHHHHHHHSSCCCCCCCSC
T ss_pred -CCCccccCceECCCCCEeECcCCCCCCCCEEEEEecCCC----------CCChHHHHHHHHHHHHHHcCCCCcccCCCC
Confidence 6 566788888899999999999999999999999874 368899999999999999985433223334
Q ss_pred cceeeeeeeeeecCeEEEEeecccCCcCCCCc--eEEE---e-------ecCCccEEEEEE--ECCeEEEEEEEcCC--c
Q psy1545 357 FSFEMFTHMTKFFGYKVILLGLFNGQTLENDY--EILL---R-------VTRGEEYIKLVM--KDGRMQGAVLIGET--E 420 (454)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~--~~~~---~-------~~~~~~~~k~~~--~~~~i~G~~~~g~~--~ 420 (454)
+|..+|+.+ +++.+|+++.++...+. .+.. . .....+|+|+++ ++++|||+|++|+. +
T Consensus 341 ~p~~~~~~p------~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~ 414 (463)
T 4dna_A 341 IATAVFSQP------EIGTVGITEEEAARKFQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGE 414 (463)
T ss_dssp CCEEECSSS------CEEEEECCHHHHHHHSSEEEEEEEEECCTTHHHHCCCCCEEEEEEEETTTCBEEEEEEESTTHHH
T ss_pred CCEEEECCC------CeEEecCCHHHHHHcCCCeEEEEEeccccchhhcCCCceEEEEEEEECCCCEEEEEEEECCCHHH
Confidence 555555544 89999999987654332 2211 1 113568999999 47999999999987 3
Q ss_pred hHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 421 IEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 421 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
.++.++.+|++++|++||.+. .++++++++
T Consensus 415 ~i~~~~~ai~~~~t~~~l~~~-~~~hPt~~e 444 (463)
T 4dna_A 415 MAQLLGISLRAGCTKDDFDRT-MAVHPTAAE 444 (463)
T ss_dssp HHHHHHHHHHTTCBHHHHHTS-CCCTTCSGG
T ss_pred HHHHHHHHHHCCCCHHHHhhc-ccCCCCHHH
Confidence 578999999999999999664 555555555
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-50 Score=408.09 Aligned_cols=382 Identities=18% Similarity=0.193 Sum_probs=285.9
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC-------ccccccccccccc---------------cc------
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG-------IVKAVTKTVPVTK---------------LL------ 52 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~-------~~~~~~~~~~~~~---------------~~------ 52 (454)
+++||+|||||++|++||..|++. |.+|+|||+++ ..+.|.+..+.+. .+
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~--G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~ 79 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQL--GLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGIS 79 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHH--TCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEE
T ss_pred CcCCEEEECcCHHHHHHHHHHHhC--CCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 468999999999999999999998 89999999987 3332222211000 00
Q ss_pred ---cccchh------hh--------HHHHHhc-CcEEEcceEEEEeCcccEEEeccC--cEEEecEEEEecCCCCCCCCC
Q psy1545 53 ---SDITVE------ET--------DANKFEG-LCTVIVDTVAAIDPRVNCVITEKQ--NRIKYKTLCICTGASPRKIWY 112 (454)
Q Consensus 53 ---~~~~~~------~~--------~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lviAtG~~p~~~~~ 112 (454)
...++. .. ....+.+ +++++.+.+..+++....|...+| ..+.||+||||||++|+.|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~~~ 159 (476)
T 3lad_A 80 TGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPP 159 (476)
T ss_dssp CSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTT
T ss_pred cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCCCC
Confidence 001110 00 1112233 899999999998888777877667 579999999999999887665
Q ss_pred C-CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccC
Q psy1545 113 S-PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTN 189 (454)
Q Consensus 113 ~-~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~ 189 (454)
. .....+.+..++..+. ..+++++|||+|++|+|+|..+. |.+|+++++.+++++. +++++.+.+.+.+.+
T Consensus 160 ~~~~~~~v~~~~~~~~~~---~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~-- 233 (476)
T 3lad_A 160 APVDQDVIVDSTGALDFQ---NVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAKEAQKILTK-- 233 (476)
T ss_dssp SCCCSSSEEEHHHHTSCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHH--
T ss_pred CCCCcccEEechhhhccc---cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-cCHHHHHHHHHHHHh--
Confidence 4 1111223334333322 24899999999999999999986 9999999999999884 788888888777755
Q ss_pred CCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC---cEEecCE
Q psy1545 190 TAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG---HTHACDI 266 (454)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g---~~~~~D~ 266 (454)
.||++++++.+++++.+++ .+.+.+.++ +++++|.
T Consensus 234 ---------------------------------------~Gv~v~~~~~v~~i~~~~~---~~~v~~~~~~g~~~~~~D~ 271 (476)
T 3lad_A 234 ---------------------------------------QGLKILLGARVTGTEVKNK---QVTVKFVDAEGEKSQAFDK 271 (476)
T ss_dssp ---------------------------------------TTEEEEETCEEEEEEECSS---CEEEEEESSSEEEEEEESE
T ss_pred ---------------------------------------CCCEEEECCEEEEEEEcCC---EEEEEEEeCCCcEEEECCE
Confidence 8999999999999987653 456777654 6799999
Q ss_pred EEEeeccCcCccc-ccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhc
Q psy1545 267 VVSAIGVVPNSNI-QVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMV 345 (454)
Q Consensus 267 vi~a~G~~p~~~~-~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 345 (454)
|++|+|++|+.+. .++..++.++++|+|.||+++||+.|||||+|||+..+ ++++.|..||++||+||+
T Consensus 272 vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~ 341 (476)
T 3lad_A 272 LIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGA----------MLAHKASEEGVVVAERIA 341 (476)
T ss_dssp EEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHH
T ss_pred EEEeeCCcccCCCCCccccCccccCCCCEeeCCCcccCCCCEEEEEccCCCc----------ccHHHHHHHHHHHHHHhc
Confidence 9999999999872 25677888888999999999999999999999999643 578899999999999999
Q ss_pred CCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEEe------------ecCCccEEEEEE--ECCeEE
Q psy1545 346 GAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLR------------VTRGEEYIKLVM--KDGRMQ 411 (454)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~------------~~~~~~~~k~~~--~~~~i~ 411 (454)
+.... ..+..+|..+|+. ++++.+|+++.++...+++.... .....+|+|+++ ++++|+
T Consensus 342 g~~~~-~~~~~~p~~~~~~------~~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~il 414 (476)
T 3lad_A 342 GHKAQ-MNYDLIPAVIYTH------PEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVL 414 (476)
T ss_dssp HCCCC-CCTTCCCEEECSS------SEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEE
T ss_pred CCCcc-cCCCCCCEEEECc------CCEEEeeCCHHHHHhcCCCEEEEEEeccccchheecCCCcEEEEEEEECCCCEEE
Confidence 75321 1222345555544 49999999998765443322211 113568999999 479999
Q ss_pred EEEEEcCC--chHHHHHHHHhcCCCcchhhhhccCCCCCCC
Q psy1545 412 GAVLIGET--EIEEMCENLILNQLDLTDIADDLLNPNIDID 450 (454)
Q Consensus 412 G~~~~g~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 450 (454)
|+|++|+. +.++.++.+|++++|++||.+.. +++++++
T Consensus 415 G~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~-~~hPt~~ 454 (476)
T 3lad_A 415 GVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMV-FAHPALS 454 (476)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSC-CCSSCSH
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCc-cCCCChH
Confidence 99999997 35789999999999999997654 3444443
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-50 Score=405.88 Aligned_cols=380 Identities=17% Similarity=0.253 Sum_probs=283.1
Q ss_pred cccEEEECCCHHHHHHHHHHhh-cCCCCeEEEEC---------CCCccccccccccccc-------------------cc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAF-LHPGESIGLVT---------PSGIVKAVTKTVPVTK-------------------LL 52 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~-~~~g~~v~lie---------~~~~~~~~~~~~~~~~-------------------~~ 52 (454)
++||+|||||+||++||..|++ . |.+|+||| +....+.|.++.+.+. .+
T Consensus 7 ~~dvvVIGgG~aGl~aA~~la~~~--G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~ 84 (495)
T 2wpf_A 7 AFDLVVIGAGSGGLEAGWNAATLY--GKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGW 84 (495)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHH--CCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred ccCEEEECCChhHHHHHHHHHHhc--CCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCc
Confidence 4899999999999999999999 8 89999999 4444333333211110 00
Q ss_pred ----c--ccchh------hh--------HHHHHh-c-CcEEEcceEEEEeCcccEEEec---c-----CcEEEecEEEEe
Q psy1545 53 ----S--DITVE------ET--------DANKFE-G-LCTVIVDTVAAIDPRVNCVITE---K-----QNRIKYKTLCIC 102 (454)
Q Consensus 53 ----~--~~~~~------~~--------~~~~~~-~-~i~~~~~~v~~i~~~~~~v~~~---~-----g~~i~~d~lviA 102 (454)
. ..++. .. ....+. . +++++.++++.+++ +.|.+. + ++.+.||+||||
T Consensus 85 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~--~~v~v~~~~~~~~~~~~~~~~d~lViA 162 (495)
T 2wpf_A 85 EFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESK--NVVVVRETADPKSAVKERLQADHILLA 162 (495)
T ss_dssp ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEET--TEEEEESSSSTTSCEEEEEEEEEEEEC
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeC--CEEEEeecCCccCCCCeEEEcCEEEEe
Confidence 0 11111 00 111222 2 79999999988876 456664 3 568999999999
Q ss_pred cCCCCCCCCCCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHh--c---CCcEEEEEeCCCccccccCCcc
Q psy1545 103 TGASPRKIWYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHEL--S---NVDIVWVVKDKHISATFLDPGA 177 (454)
Q Consensus 103 tG~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l--~---g~~V~~i~~~~~~~~~~~d~~~ 177 (454)
||++|+.|+++.. ..+.+.+++..+. ..+++++|||+|++|+|+|..| . |.+||++++.+++++. +++++
T Consensus 163 TGs~p~~p~i~G~-~~~~~~~~~~~~~---~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-~d~~~ 237 (495)
T 2wpf_A 163 TGSWPQMPAIPGI-EHCISSNEAFYLP---EPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG-FDETI 237 (495)
T ss_dssp CCEEECCCCCTTG-GGCEEHHHHTTCS---SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT-SCHHH
T ss_pred CCCCcCCCCCCCc-cccccHHHHHhhh---hcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc-cCHHH
Confidence 9999998887722 1233444444332 2479999999999999999987 3 8999999999998875 78888
Q ss_pred hhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec
Q psy1545 178 AEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT 257 (454)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~ 257 (454)
...+.+.+.+ .||++++++.|.+++.+++ ..+.+.++
T Consensus 238 ~~~l~~~l~~-----------------------------------------~GV~i~~~~~v~~i~~~~~--~~~~v~~~ 274 (495)
T 2wpf_A 238 REEVTKQLTA-----------------------------------------NGIEIMTNENPAKVSLNTD--GSKHVTFE 274 (495)
T ss_dssp HHHHHHHHHH-----------------------------------------TTCEEEESCCEEEEEECTT--SCEEEEET
T ss_pred HHHHHHHHHh-----------------------------------------CCCEEEeCCEEEEEEEcCC--ceEEEEEC
Confidence 8888777755 8999999999999987542 24678888
Q ss_pred CCcEEecCEEEEeeccCcCcccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHH
Q psy1545 258 NGHTHACDIVVSAIGVVPNSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKH 335 (454)
Q Consensus 258 ~g~~~~~D~vi~a~G~~p~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~ 335 (454)
+|+++++|.|++|+|++|+.+ + ++..+++++++|+|.||+++||+.|+|||+|||+.. +++++.|..
T Consensus 275 ~G~~i~~D~vv~a~G~~p~~~-~L~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~----------~~l~~~A~~ 343 (495)
T 2wpf_A 275 SGKTLDVDVVMMAIGRIPRTN-DLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDR----------LMLTPVAIN 343 (495)
T ss_dssp TSCEEEESEEEECSCEEECCG-GGTGGGTTCCBCTTSSBCCCTTCBCSSTTEEECGGGGCS----------CCCHHHHHH
T ss_pred CCcEEEcCEEEECCCCccccc-ccchhhcCccCCCCCCEEECCCCccCCCCEEEEeccCCC----------ccCHHHHHH
Confidence 998999999999999999997 4 566788888889999999999999999999999963 368889999
Q ss_pred HHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCC--ceEEE---e-------ecCCccE-EE
Q psy1545 336 MGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEND--YEILL---R-------VTRGEEY-IK 402 (454)
Q Consensus 336 ~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~--~~~~~---~-------~~~~~~~-~k 402 (454)
||++||.||++.......+..+|..+|+ +.+++++|+++.++.... +.+.. . .....+| +|
T Consensus 344 ~g~~aa~~i~g~~~~~~~~~~~p~~~~~------~~~~a~vGl~e~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~k 417 (495)
T 2wpf_A 344 EGAALVDTVFGNKPRKTDHTRVASAVFS------IPPIGTCGLIEEVAAKEFEKVAVYMSSFTPLMHNISGSKYKKFVAK 417 (495)
T ss_dssp HHHHHHHHHHSSCCCCCCCSSCEEEECC------SSCEEEEECCHHHHHHHSSEEEEEEEEECCTHHHHHSCTTCCEEEE
T ss_pred HHHHHHHHhcCCCCCcCCCCCCCEEEEC------CCCeEEEeCCHHHHHhcCCCEEEEEEecCchhhhhhcCCCcEEEEE
Confidence 9999999999743221222233444444 558999999987654322 22111 0 1135689 99
Q ss_pred EEEE--CCeEEEEEEEcCCc--hHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 403 LVMK--DGRMQGAVLIGETE--IEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 403 ~~~~--~~~i~G~~~~g~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
++++ +++|+|+|++|+.. .++.++.+|++++|++|+.+. .+++.++.+
T Consensus 418 lv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~-~~~hPt~~e 469 (495)
T 2wpf_A 418 IVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNT-IGVHPTSAE 469 (495)
T ss_dssp EEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHS-CCCSSCSGG
T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc-ccCCCChHH
Confidence 9994 89999999999983 478899999999999999765 555555554
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-50 Score=406.79 Aligned_cols=382 Identities=20% Similarity=0.232 Sum_probs=283.2
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc-ccccccc----------------------cc--cccc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV-TKTVPVT----------------------KL--LSDI 55 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~-~~~~~~~----------------------~~--~~~~ 55 (454)
|++||+|||||+||++||..|++. |.+|+|||+++.+++. .+..+.+ .. ....
T Consensus 24 ~~~dVvVIGgG~aGl~aA~~la~~--G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 101 (491)
T 3urh_A 24 MAYDLIVIGSGPGGYVCAIKAAQL--GMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKL 101 (491)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCcc
Confidence 368999999999999999999998 8999999987655442 2221100 00 0001
Q ss_pred chhh--------------hHHHHHhc-CcEEEcceEEEEeCcccEEEeccC--cEEEecEEEEecCCCCCCCCCCC---c
Q psy1545 56 TVEE--------------TDANKFEG-LCTVIVDTVAAIDPRVNCVITEKQ--NRIKYKTLCICTGASPRKIWYSP---H 115 (454)
Q Consensus 56 ~~~~--------------~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lviAtG~~p~~~~~~~---~ 115 (454)
++.. .....+.. +++++.+.+..+++....|...+| .++.||+||||||++|..++..+ .
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~ipg~~~~~~ 181 (491)
T 3urh_A 102 NLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVAFD 181 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEECCCBTTBCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCCCCCCcccccC
Confidence 1110 01112333 899999999999888777777666 57999999999999874332111 1
Q ss_pred eeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCCh
Q psy1545 116 VITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKP 193 (454)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~ 193 (454)
...+.+..+...+. ..+++++|||+|++|+|+|..+. |.+|+++++.+++++. +++++.+.+.+.+.+
T Consensus 182 ~~~~~~~~~~~~~~---~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~------ 251 (491)
T 3urh_A 182 EKTIVSSTGALALE---KVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG-MDGEVAKQLQRMLTK------ 251 (491)
T ss_dssp SSSEECHHHHTSCS---SCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS-SCHHHHHHHHHHHHH------
T ss_pred CeeEEehhHhhhhh---hcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc-CCHHHHHHHHHHHHh------
Confidence 12234444443332 24899999999999999999986 9999999999999885 688888888777755
Q ss_pred hhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC---C--cEEecCEEE
Q psy1545 194 ETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN---G--HTHACDIVV 268 (454)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~---g--~~~~~D~vi 268 (454)
.||++++++.+.+++.+++ .+.+.+++ | +++++|.|+
T Consensus 252 -----------------------------------~gV~v~~~~~v~~i~~~~~---~~~v~~~~~~~g~~~~i~~D~Vi 293 (491)
T 3urh_A 252 -----------------------------------QGIDFKLGAKVTGAVKSGD---GAKVTFEPVKGGEATTLDAEVVL 293 (491)
T ss_dssp -----------------------------------TTCEEECSEEEEEEEEETT---EEEEEEEETTSCCCEEEEESEEE
T ss_pred -----------------------------------CCCEEEECCeEEEEEEeCC---EEEEEEEecCCCceEEEEcCEEE
Confidence 8999999999999987653 45566653 5 689999999
Q ss_pred EeeccCcCcccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 269 SAIGVVPNSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 269 ~a~G~~p~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
+|+|++|+.+ + ++..+++++++|+|.||+++||+.|+|||+|||++.+ ++++.|..||+.||+||++
T Consensus 294 ~a~G~~p~~~-~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g 362 (491)
T 3urh_A 294 IATGRKPSTD-GLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP----------MLAHKAEDEGVAVAEIIAG 362 (491)
T ss_dssp ECCCCEECCT-TSCHHHHTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTT
T ss_pred EeeCCccCCC-ccCchhcCceECCCCCEeECCCCCCCCCCEEEEEecCCCc----------cchhHHHHHHHHHHHHHcC
Confidence 9999999998 5 4566788888999999999999999999999999643 6889999999999999998
Q ss_pred CCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCce--EEEe----------ecCCccEEEEEE--ECCeEEE
Q psy1545 347 AVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE--ILLR----------VTRGEEYIKLVM--KDGRMQG 412 (454)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~~----------~~~~~~~~k~~~--~~~~i~G 412 (454)
... +..+..+|+.+|+ +++++.+|+++.++...+++ +... .....+|+|+++ ++++|||
T Consensus 363 ~~~-~~~~~~~p~~~~~------~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG 435 (491)
T 3urh_A 363 QAG-HVNYDVIPGVVYT------QPEVASVGKTEEELKAAGVAYKIGKFPFTANGRARAMLQTDGFVKILADKETDRVLG 435 (491)
T ss_dssp SCC-CCCTTCCCEEECS------SSCEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEE
T ss_pred CCc-ccCCCCCCEEEEc------cCCeEEEeCCHHHHHhCCCCEEEEEEecCcchhhhcCCCCcEEEEEEEECCCCEEEE
Confidence 532 1122234555554 44999999999876543332 2211 113568999999 4899999
Q ss_pred EEEEcCC--chHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 413 AVLIGET--EIEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 413 ~~~~g~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
+|++|+. +.++.++.+|++++|++||.+.. ++++++.+
T Consensus 436 ~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~-~~hPt~~e 475 (491)
T 3urh_A 436 GHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTC-HAHPTMSE 475 (491)
T ss_dssp EEEESTTHHHHHHHHHHHHHTTCBHHHHHTSC-CCSSCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHCCCcHHHHhcCc-cCCCChHH
Confidence 9999998 35789999999999999997765 44444443
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-50 Score=408.73 Aligned_cols=383 Identities=17% Similarity=0.216 Sum_probs=287.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccc-------------------cc----cccchh
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTK-------------------LL----SDITVE 58 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~-------------------~~----~~~~~~ 58 (454)
++||+|||||++|++||..|++. |.+|+|||++...+.|.++.+.+. .+ ..+++.
T Consensus 20 ~~dVvIIGgG~aGl~aA~~la~~--G~~V~liE~~~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 97 (478)
T 3dk9_A 20 SYDYLVIGGGSGGLASARRAAEL--GARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWR 97 (478)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 48999999999999999999998 899999999876555443211100 00 001110
Q ss_pred ------h----h----HHHHHhc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCC---CCCCceeeee
Q psy1545 59 ------E----T----DANKFEG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKI---WYSPHVITIR 120 (454)
Q Consensus 59 ------~----~----~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~---~~~~~~~~~~ 120 (454)
. . ....+.. +++++.+++..+++....+.. +++++.||+||||||++|+.| +++..- ...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~-~g~~~~~d~lviAtG~~p~~p~~~~i~G~~-~~~ 175 (478)
T 3dk9_A 98 VIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEV-SGKKYTAPHILIATGGMPSTPHESQIPGAS-LGI 175 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEEE-TTEEEECSCEEECCCEEECCCCTTTSTTGG-GSB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEEE-CCEEEEeeEEEEccCCCCCCCCcCCCCCCc-eeE
Confidence 0 0 1112233 899999999999888777774 677899999999999999988 776211 223
Q ss_pred ccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhh
Q psy1545 121 DTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFK 198 (454)
Q Consensus 121 ~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~ 198 (454)
+.+++..+.+ .+++++|||+|++|+|+|..+. |.+|+++++.+++++. +++++.+.+.+.+.+
T Consensus 176 ~~~~~~~~~~---~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~~----------- 240 (478)
T 3dk9_A 176 TSDGFFQLEE---LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELEN----------- 240 (478)
T ss_dssp CHHHHTTCCS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHH-----------
T ss_pred chHHhhchhh---cCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccc-cCHHHHHHHHHHHHH-----------
Confidence 3444433322 3799999999999999999986 9999999999998864 788888888777755
Q ss_pred hcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC-------CcEEecCEEEEee
Q psy1545 199 RMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN-------GHTHACDIVVSAI 271 (454)
Q Consensus 199 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~-------g~~~~~D~vi~a~ 271 (454)
.||++++++.+++++..++ +..+.+.+++ |+++++|.|++|+
T Consensus 241 ------------------------------~gv~i~~~~~v~~i~~~~~-~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~ 289 (478)
T 3dk9_A 241 ------------------------------AGVEVLKFSQVKEVKKTLS-GLEVSMVTAVPGRLPVMTMIPDVDCLLWAI 289 (478)
T ss_dssp ------------------------------TTCEEETTEEEEEEEECSS-SEEEEEEECCTTSCCEEEEEEEESEEEECS
T ss_pred ------------------------------CCCEEEeCCEEEEEEEcCC-CcEEEEEEccCCCCcccceEEEcCEEEEee
Confidence 8999999999999987643 2135666765 2679999999999
Q ss_pred ccCcCcccc-cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC-
Q psy1545 272 GVVPNSNIQ-VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK- 349 (454)
Q Consensus 272 G~~p~~~~~-~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~- 349 (454)
|++|+.+.+ ++..|++++++|+|.||+++||+.|||||+|||++. +++++.|..||++||+||++...
T Consensus 290 G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~----------~~~~~~A~~~g~~aa~~i~~~~~~ 359 (478)
T 3dk9_A 290 GRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGK----------ALLTPVAIAAGRKLAHRLFEYKED 359 (478)
T ss_dssp CEEESCTTSCGGGGTCCBCTTCCBCCCTTCBCSSTTEEECGGGGCS----------SCCHHHHHHHHHHHHHHHHSCCTT
T ss_pred ccccCCCCCCchhcCCeeCCCCCEeeCCCcccCCCCEEEEEecCCC----------CccHhHHHHHHHHHHHHHcCCCCc
Confidence 999998712 566788888899999999999999999999999954 36788999999999999998621
Q ss_pred CCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC----CceEE---Ee-------ecCCccEEEEEE--ECCeEEEE
Q psy1545 350 NEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN----DYEIL---LR-------VTRGEEYIKLVM--KDGRMQGA 413 (454)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~----~~~~~---~~-------~~~~~~~~k~~~--~~~~i~G~ 413 (454)
....+..+|+.+|+.+ +++.+|+++.++... .+.+. .. .....+|+|+++ ++++|||+
T Consensus 360 ~~~~~~~~p~~~~~~p------~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~ 433 (478)
T 3dk9_A 360 SKLDYNNIPTVVFSHP------PIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGI 433 (478)
T ss_dssp CCCCCTTCCEEECCSS------CEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEE
T ss_pred ccCCCCCCCeEEECCC------ceEEeeCCHHHHHhhCCCccEEEEEeecCcchhhhhcCCCcEEEEEEEECCCCEEEEE
Confidence 1222333555555544 899999999876532 12211 11 123568999999 48999999
Q ss_pred EEEcCC--chHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 414 VLIGET--EIEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 414 ~~~g~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
|++|+. +.++.++.+|++++|++||.+ ..++++++++
T Consensus 434 ~~~g~~a~e~i~~~~~ai~~~~t~~~l~~-~~~~hPt~~e 472 (478)
T 3dk9_A 434 HMQGLGCDEMLQGFAVAVKMGATKADFDN-TVAIHPTSSE 472 (478)
T ss_dssp EEESTTHHHHHHHHHHHHHTTCBHHHHHT-SCCCSSSSGG
T ss_pred EEECCCHHHHHHHHHHHHHCCCCHHHHhh-cccCCCChHH
Confidence 999987 357899999999999999966 4445555555
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-50 Score=401.98 Aligned_cols=377 Identities=20% Similarity=0.271 Sum_probs=281.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc-------------------c---cccchhh
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL-------------------L---SDITVEE 59 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~-------------------~---~~~~~~~ 59 (454)
++||+|||||+||++||..|++. +.+|+|||+++..+.|.++.+.+.. + ...++..
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~--g~~V~lie~~~~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 83 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQL--GLKVLAVEAGEVGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLKK 83 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCCCCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHHH
Confidence 48999999999999999999998 8999999999854433332211100 0 0011110
Q ss_pred ------h--------HHHHHhc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCC-CCCceeeeeccc
Q psy1545 60 ------T--------DANKFEG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIW-YSPHVITIRDTD 123 (454)
Q Consensus 60 ------~--------~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~-~~~~~~~~~~~~ 123 (454)
. ....+.+ +++++.+++..+++ +.|.+. |+++.||+||||||++|+.|+ ++... .+.+.+
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~--~~v~v~-g~~~~~d~lViATGs~p~~p~gi~~~~-~v~~~~ 159 (464)
T 2eq6_A 84 LGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGP--KEVEVG-GERYGAKSLILATGSEPLELKGFPFGE-DVWDST 159 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET--TEEEET-TEEEEEEEEEECCCEEECCBTTBCCSS-SEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccC--CEEEEc-cEEEEeCEEEEcCCCCCCCCCCCCCCC-cEEcHH
Confidence 0 1122334 89999888888775 456665 678999999999999999886 55211 234555
Q ss_pred hHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcc
Q psy1545 124 SVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMR 201 (454)
Q Consensus 124 ~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~ 201 (454)
++..+.+. .+++++|||+|++|+|+|..|. |.+|+++++.+++++. +++++.+.+.+.+.+
T Consensus 160 ~~~~l~~~--~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~-------------- 222 (464)
T 2eq6_A 160 RALKVEEG--LPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ-GDPETAALLRRALEK-------------- 222 (464)
T ss_dssp HHTCGGGC--CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH--------------
T ss_pred HHHhhhhh--cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc-cCHHHHHHHHHHHHh--------------
Confidence 55554331 3799999999999999999986 9999999999998874 688887777777755
Q ss_pred cccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec-C--Cc--EEecCEEEEeeccCcC
Q psy1545 202 YNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT-N--GH--THACDIVVSAIGVVPN 276 (454)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~-~--g~--~~~~D~vi~a~G~~p~ 276 (454)
.||++++++.+++++.+++ .+.+.++ + |+ ++++|.|++|+|++|+
T Consensus 223 ---------------------------~gV~i~~~~~v~~i~~~~~---~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~ 272 (464)
T 2eq6_A 223 ---------------------------EGIRVRTKTKAVGYEKKKD---GLHVRLEPAEGGEGEEVVVDKVLVAVGRKPR 272 (464)
T ss_dssp ---------------------------TTCEEECSEEEEEEEEETT---EEEEEEEETTCCSCEEEEESEEEECSCEEES
T ss_pred ---------------------------cCCEEEcCCEEEEEEEeCC---EEEEEEeecCCCceeEEEcCEEEECCCcccC
Confidence 8999999999999987542 3566765 6 76 8999999999999999
Q ss_pred cccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcce
Q psy1545 277 SNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVI 354 (454)
Q Consensus 277 ~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~ 354 (454)
.+ + ++..++.++++|+|.||+++||+.|+|||+|||+..+ ++++.|..||+.||+||++... ...+
T Consensus 273 ~~-~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~-~~~~ 340 (464)
T 2eq6_A 273 TE-GLGLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPP----------LLAHKAMREGLIAAENAAGKDS-AFDY 340 (464)
T ss_dssp CT-TSSHHHHTCCBCTTSCBCCCTTCBCSSTTEEECGGGTCSS----------CCHHHHHHHHHHHHHHHTTCCC-CCCC
T ss_pred CC-CCChhhcCceecCCCCEEECCCcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHhcCCCc-ccCC
Confidence 97 5 3556788878899999999999999999999998743 5788999999999999997421 1111
Q ss_pred eccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEEe------------ecCCccEEEEEEE--CCeEEEEEEEcCCc
Q psy1545 355 QDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLR------------VTRGEEYIKLVMK--DGRMQGAVLIGETE 420 (454)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~------------~~~~~~~~k~~~~--~~~i~G~~~~g~~~ 420 (454)
. .|+. .+++.+++.+|+++.++...+++.... .....+|+|++++ +++|+|+|++|+..
T Consensus 341 ~-~p~~------~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a 413 (464)
T 2eq6_A 341 Q-VPSV------VYTSPEWAGVGLTEEEAKRAGYKVKVGKFPLAASGRALTLGGAEGMVKVVGDEETDLLLGVFIVGPQA 413 (464)
T ss_dssp C-CCEE------ECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTSCCCCEEEEEEETTTCBEEEEEEEETTH
T ss_pred C-CCeE------EECCCCEEEEeCCHHHHHhcCCCEEEEEEEcCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCH
Confidence 1 3333 344569999999987654333322211 1235689999994 79999999999983
Q ss_pred --hHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 421 --IEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 421 --~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
.++.++.+|++++|++++.+. +++++++.+
T Consensus 414 ~e~i~~~~~ai~~~~~~~~l~~~-~~~~Pt~~e 445 (464)
T 2eq6_A 414 GELIAEAALALEMGATLTDLALT-VHPHPTLSE 445 (464)
T ss_dssp HHHHHHHHHHHHTTCBHHHHHHS-CCCSSCTTH
T ss_pred HHHHHHHHHHHHCCCCHHHHhcC-cCCCCChHH
Confidence 579999999999999999764 334444443
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-49 Score=399.91 Aligned_cols=376 Identities=18% Similarity=0.214 Sum_probs=282.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccc---------------------cc---cccccccch
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTV---------------------PV---TKLLSDITV 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~---------------------~~---~~~~~~~~~ 57 (454)
++||+|||||++|+++|..|++. +.+|+|||++...+.+.+.. .+ .......++
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (467)
T 1zk7_A 4 PVQVAVIGSGGAAMAAALKAVEQ--GAQVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 81 (467)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCH
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCH
Confidence 58999999999999999999998 89999999986543322211 00 000001111
Q ss_pred hh---------------hHHHHHhc--CcEEEcceEEEEeCcccEEEeccC--cEEEecEEEEecCCCCCCCCCC-Ccee
Q psy1545 58 EE---------------TDANKFEG--LCTVIVDTVAAIDPRVNCVITEKQ--NRIKYKTLCICTGASPRKIWYS-PHVI 117 (454)
Q Consensus 58 ~~---------------~~~~~~~~--~i~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lviAtG~~p~~~~~~-~~~~ 117 (454)
.. .....+.+ +++++.+++.++++....|.+.+| +.+.||+||||||++|+.|+++ ....
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~G~~~~ 161 (467)
T 1zk7_A 82 SKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLKES 161 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECCCCCTTTTTS
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCCCCCCcC
Confidence 10 01122333 789988899999988777777777 6899999999999999998887 1112
Q ss_pred eeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhh
Q psy1545 118 TIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPET 195 (454)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~ 195 (454)
.+.+.+++..+. ..+++++|||+|++|+|+|..+. |.+|+++++.+++++ +++++.+.+.+.+.+
T Consensus 162 ~~~~~~~~~~~~---~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~-------- 228 (467)
T 1zk7_A 162 PYWTSTEALASD---TIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR--EDPAIGEAVTAAFRA-------- 228 (467)
T ss_dssp CCBCHHHHHHCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT--SCHHHHHHHHHHHHH--------
T ss_pred ceecHHHHhccc---ccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC--CCHHHHHHHHHHHHh--------
Confidence 234555555443 24899999999999999999986 999999999999887 688887777777755
Q ss_pred hhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 196 IFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
.||++++++.|++++.+++ .+.+.++ +.++++|.||+|+|++|
T Consensus 229 ---------------------------------~Gv~i~~~~~v~~i~~~~~---~~~v~~~-~~~i~aD~Vv~a~G~~p 271 (467)
T 1zk7_A 229 ---------------------------------EGIEVLEHTQASQVAHMDG---EFVLTTT-HGELRADKLLVATGRTP 271 (467)
T ss_dssp ---------------------------------TTCEEETTCCEEEEEEETT---EEEEEET-TEEEEESEEEECSCEEE
T ss_pred ---------------------------------CCCEEEcCCEEEEEEEeCC---EEEEEEC-CcEEEcCEEEECCCCCc
Confidence 8999999999999987542 3456665 45899999999999999
Q ss_pred Ccccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcc
Q psy1545 276 NSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPV 353 (454)
Q Consensus 276 ~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~ 353 (454)
+.+ + ++..+++++++|+|.||+++||+.|+|||+|||+..+ .+++.|..||+.+|.||++.. ....
T Consensus 272 ~~~-~l~l~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~-~~~~ 339 (467)
T 1zk7_A 272 NTR-SLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGDCTDQP----------QFVYVAAAAGTRAAINMTGGD-AALD 339 (467)
T ss_dssp SCT-TSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECSTTBSSC----------CCHHHHHHHHHHHHHHHTTCC-CCCC
T ss_pred CCC-cCCchhcCCcCCCCCCEEECCCcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHHcCCC-cccC
Confidence 987 4 4566788888899999999999999999999999753 568899999999999999742 1111
Q ss_pred eeccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEEe------------ecCCccEEEEEEE--CCeEEEEEEEcCC
Q psy1545 354 IQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLR------------VTRGEEYIKLVMK--DGRMQGAVLIGET 419 (454)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~------------~~~~~~~~k~~~~--~~~i~G~~~~g~~ 419 (454)
+..+|+.. +++.+++++|+++.++...+++.... .....+|+|++++ +++|+|+|++|+.
T Consensus 340 ~~~~p~~~------~~~~~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~ 413 (467)
T 1zk7_A 340 LTAMPAVV------FTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPE 413 (467)
T ss_dssp CTTCEEEE------CSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETT
T ss_pred CCCCCEEE------ecCCceEEEecCHHHHHhcCCCeEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCC
Confidence 22233333 34559999999987654333322211 1235689999995 8999999999998
Q ss_pred --chHHHHHHHHhcCCCcchhhhhc-cCCCC
Q psy1545 420 --EIEEMCENLILNQLDLTDIADDL-LNPNI 447 (454)
Q Consensus 420 --~~~~~~~~~i~~~~~~~~~~~~~-~~~~~ 447 (454)
+.++.++.+|++++|++++.+.. .+|++
T Consensus 414 a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~ 444 (467)
T 1zk7_A 414 AGELIQTAALAIRNRMTVQELADQLFPYLTM 444 (467)
T ss_dssp HHHHHHHHHHHHHTTCBHHHHHTSCCCTTST
T ss_pred HHHHHHHHHHHHHCCCCHHHHhcCccCCCCH
Confidence 45788999999999999996544 34443
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=403.47 Aligned_cols=383 Identities=15% Similarity=0.197 Sum_probs=283.5
Q ss_pred cccEEEECCCHHHHHHHHHHhh-cCCCCeEEEEC---------CCCccccccccccccc-------------------cc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAF-LHPGESIGLVT---------PSGIVKAVTKTVPVTK-------------------LL 52 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~-~~~g~~v~lie---------~~~~~~~~~~~~~~~~-------------------~~ 52 (454)
++||+|||||++|++||..|++ . |.+|+||| +....+.|.++.+.+. .+
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~~~--G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~ 80 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASLH--KKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGW 80 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHH--CCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTE
T ss_pred cccEEEECCCHHHHHHHHHHHHHc--CCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCc
Confidence 5899999999999999999999 8 89999999 5544443333211110 00
Q ss_pred ----c--ccchhh--------------hHHHHHhc--CcEEEcceEEEEeCcccEEEe---ccC---cEEEecEEEEecC
Q psy1545 53 ----S--DITVEE--------------TDANKFEG--LCTVIVDTVAAIDPRVNCVIT---EKQ---NRIKYKTLCICTG 104 (454)
Q Consensus 53 ----~--~~~~~~--------------~~~~~~~~--~i~~~~~~v~~i~~~~~~v~~---~~g---~~i~~d~lviAtG 104 (454)
. ..++.. .....+.+ +++++.++++++++....+.. .+| ..+.||+||||||
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~~~~d~lviAtG 160 (490)
T 1fec_A 81 ELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATG 160 (490)
T ss_dssp ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCC
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEEEEcCEEEEeCC
Confidence 0 111110 11122333 799999999999875433332 256 6899999999999
Q ss_pred CCCCCCCCCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHh--c---CCcEEEEEeCCCccccccCCcchh
Q psy1545 105 ASPRKIWYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHEL--S---NVDIVWVVKDKHISATFLDPGAAE 179 (454)
Q Consensus 105 ~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l--~---g~~V~~i~~~~~~~~~~~d~~~~~ 179 (454)
++|+.|+++.. ..+.+.+++..+. ..+++++|||+|++|+|+|..+ . |.+|+++++.+++++. +++++..
T Consensus 161 s~p~~p~i~g~-~~~~~~~~~~~~~---~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-~d~~~~~ 235 (490)
T 1fec_A 161 SWPQHLGIEGD-DLCITSNEAFYLD---EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-FDSELRK 235 (490)
T ss_dssp EEECCCCSBTG-GGCBCHHHHTTCS---SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-SCHHHHH
T ss_pred CCCCCCCCCCc-cceecHHHHhhhh---hcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccc-cCHHHHH
Confidence 99998887622 1233444444332 2489999999999999999887 3 8999999999998874 7888888
Q ss_pred hhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC
Q psy1545 180 FFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG 259 (454)
Q Consensus 180 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g 259 (454)
.+.+.+.+ .||++++++.|++++.+++ ..+.+.+++|
T Consensus 236 ~l~~~l~~-----------------------------------------~GV~i~~~~~v~~i~~~~~--~~~~v~~~~G 272 (490)
T 1fec_A 236 QLTEQLRA-----------------------------------------NGINVRTHENPAKVTKNAD--GTRHVVFESG 272 (490)
T ss_dssp HHHHHHHH-----------------------------------------TTEEEEETCCEEEEEECTT--SCEEEEETTS
T ss_pred HHHHHHHh-----------------------------------------CCCEEEeCCEEEEEEEcCC--CEEEEEECCC
Confidence 88777755 8999999999999987642 2467888899
Q ss_pred cEEecCEEEEeeccCcCcccc-cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHH
Q psy1545 260 HTHACDIVVSAIGVVPNSNIQ-VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGT 338 (454)
Q Consensus 260 ~~~~~D~vi~a~G~~p~~~~~-~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~ 338 (454)
+++++|.||+|+|++|+.+.+ ++..|++++++|+|.||+++||+.|+|||+|||+.. +++++.|..||+
T Consensus 273 ~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~~~t~~~~IyA~GD~~~~----------~~l~~~A~~~g~ 342 (490)
T 1fec_A 273 AEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDR----------VMLTPVAINEGA 342 (490)
T ss_dssp CEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCS----------CCCHHHHHHHHH
T ss_pred cEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECCCCccCCCCEEEEeccCCC----------ccCHHHHHHHHH
Confidence 899999999999999998712 566788888889999999999999999999999963 368899999999
Q ss_pred HHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCC--ceEEE---e-------ecCCccEE-EEEE
Q psy1545 339 YAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEND--YEILL---R-------VTRGEEYI-KLVM 405 (454)
Q Consensus 339 ~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~--~~~~~---~-------~~~~~~~~-k~~~ 405 (454)
+||.||++.......+..+|..+| ++.+++++|+++.++.... +.+.. . .....+|+ |+++
T Consensus 343 ~aa~~i~g~~~~~~~~~~~p~~~~------~~~~~a~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~ 416 (490)
T 1fec_A 343 AFVDTVFANKPRATDHTKVACAVF------SIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVT 416 (490)
T ss_dssp HHHHHHHSSCCCCCCCSSCCEEEC------CSSCEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEE
T ss_pred HHHHHhcCCCCCcCCCCCccEEEE------CCCCeEEEeCCHHHHHhcCCCEEEEEeecChhhhhhhcCCCeEEEEEEEE
Confidence 999999974321112222344444 4559999999987654322 22111 0 11356899 9999
Q ss_pred E--CCeEEEEEEEcCCc--hHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 406 K--DGRMQGAVLIGETE--IEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 406 ~--~~~i~G~~~~g~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
+ +++|+|+|++|+.. .++.++.+|++++|++|+.+. .++++++.+
T Consensus 417 ~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~-~~~hPt~~e 465 (490)
T 1fec_A 417 NHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNT-IGVHPTSAE 465 (490)
T ss_dssp ETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTS-CCCSSCSGG
T ss_pred ECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcc-ccCCCCHHH
Confidence 4 89999999999983 478899999999999999765 555555554
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=403.41 Aligned_cols=384 Identities=17% Similarity=0.214 Sum_probs=283.1
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC--------C-cccccccccccc---------------------c
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS--------G-IVKAVTKTVPVT---------------------K 50 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~--------~-~~~~~~~~~~~~---------------------~ 50 (454)
|++||+|||||+||++||..|++. |.+|+|||+. . ..+.|.++.+.+ .
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~~--G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~ 82 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQL--GKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGW 82 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC--CCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCc
Confidence 468999999999999999999998 8999999972 2 223232221110 0
Q ss_pred cc---cccchh------hh--------HHHHHhc-CcEEEcceEEEEeCcccEEEeccC--cEEEecEEEEecCCCCCCC
Q psy1545 51 LL---SDITVE------ET--------DANKFEG-LCTVIVDTVAAIDPRVNCVITEKQ--NRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 51 ~~---~~~~~~------~~--------~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lviAtG~~p~~~ 110 (454)
.. ...++. .. ....+.. +++++.+++.++++....|...+| .++.||+||||||++|+.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p 162 (488)
T 3dgz_A 83 EVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYP 162 (488)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCCC
Confidence 00 011111 00 1112233 899999999999988877777666 4799999999999999998
Q ss_pred C-CCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhc
Q psy1545 111 W-YSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINK 187 (454)
Q Consensus 111 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~ 187 (454)
+ ++..-....+.+++..+. ..+++++|||+|++|+|+|..+. |.+|+++++.. +++. +|+++.+.+.+.+.+
T Consensus 163 ~~i~G~~~~~~~~~~~~~~~---~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~l~~-~d~~~~~~l~~~l~~ 237 (488)
T 3dgz_A 163 TQVKGALEYGITSDDIFWLK---ESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI-PLRG-FDQQMSSLVTEHMES 237 (488)
T ss_dssp SSCBTHHHHCBCHHHHTTCS---SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-SSTT-SCHHHHHHHHHHHHH
T ss_pred CCCCCcccccCcHHHHHhhh---hcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc-cccc-CCHHHHHHHHHHHHH
Confidence 8 772111122444444332 24889999999999999999987 99999999864 4543 688888888777755
Q ss_pred cCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC---Cc--EE
Q psy1545 188 TNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN---GH--TH 262 (454)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~---g~--~~ 262 (454)
.||++++++.+.+++..++ ..+.+.+.+ |+ ++
T Consensus 238 -----------------------------------------~gv~~~~~~~v~~i~~~~~--~~~~v~~~~~~~g~~~~~ 274 (488)
T 3dgz_A 238 -----------------------------------------HGTQFLKGCVPSHIKKLPT--NQLQVTWEDHASGKEDTG 274 (488)
T ss_dssp -----------------------------------------TTCEEEETEEEEEEEECTT--SCEEEEEEETTTTEEEEE
T ss_pred -----------------------------------------CCCEEEeCCEEEEEEEcCC--CcEEEEEEeCCCCeeEEE
Confidence 8999999999999986432 235565554 54 57
Q ss_pred ecCEEEEeeccCcCcccc--cCCCCceec-CCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHH
Q psy1545 263 ACDIVVSAIGVVPNSNIQ--VHGTPFELA-PDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTY 339 (454)
Q Consensus 263 ~~D~vi~a~G~~p~~~~~--~~~~~l~~~-~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~ 339 (454)
++|.|++|+|++|+.+ + ++..+++++ ++|+|.||+++||+.|||||+|||+... +++++.|..||++
T Consensus 275 ~~D~vi~a~G~~p~~~-~l~l~~~g~~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~---------~~~~~~A~~~g~~ 344 (488)
T 3dgz_A 275 TFDTVLWAIGRVPETR-TLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGR---------PELTPTAIKAGKL 344 (488)
T ss_dssp EESEEEECSCEEESCG-GGTGGGGTCCBCSSSCCBCCCTTSBCSSTTEEECGGGBTTC---------CCCHHHHHHHHHH
T ss_pred ECCEEEEcccCCcccC-cCCccccCcEecCCCCeEeECCCCccCCCCEEEeEEecCCC---------CcchhHHHHHHHH
Confidence 9999999999999998 6 566788888 7899999999999999999999998532 3678899999999
Q ss_pred HHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC----CceEEE---ee--------cCCccEEEEE
Q psy1545 340 AAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN----DYEILL---RV--------TRGEEYIKLV 404 (454)
Q Consensus 340 aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~----~~~~~~---~~--------~~~~~~~k~~ 404 (454)
||+||++.......+..+|+.+|+.+ +++.+|+++.++... .+.+.. .. ....+|+|++
T Consensus 345 aa~~i~g~~~~~~~~~~~p~~~~~~p------~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i 418 (488)
T 3dgz_A 345 LAQRLFGKSSTLMDYSNVPTTVFTPL------EYGCVGLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMV 418 (488)
T ss_dssp HHHHHHSCCCCCCCCTTCCEEECSSS------EEEEEECCHHHHHHHHCGGGEEEEEEECCCHHHHHTTCCCTTCEEEEE
T ss_pred HHHHHcCCCCccCCCCCCCEEEECCC------CeEEEeCCHHHHHhhCCCCcEEEEEccccchhhhhhccCCCcEEEEEE
Confidence 99999986433323334566666655 899999999776432 222221 00 1156899999
Q ss_pred EE---CCeEEEEEEEcCC--chHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 405 MK---DGRMQGAVLIGET--EIEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 405 ~~---~~~i~G~~~~g~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
++ +++|||+|++|+. +.++.++.+|++++|++||.+. .++++++++
T Consensus 419 ~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~-~~~hPt~~e 469 (488)
T 3dgz_A 419 CMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQT-VGIHPTCSE 469 (488)
T ss_dssp EESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTS-CCCSSCSTH
T ss_pred EecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcc-ccCCCChHH
Confidence 95 6999999999997 4678999999999999999765 445555544
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=401.99 Aligned_cols=381 Identities=21% Similarity=0.231 Sum_probs=283.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc-cccccccc--------------------cc----cccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV-TKTVPVTK--------------------LL----SDIT 56 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~-~~~~~~~~--------------------~~----~~~~ 56 (454)
++||+|||||+||+++|..|++. +.+|+|||+++.+++. .+....+. .+ ...+
T Consensus 6 ~~dvvIIGaG~aGl~aA~~l~~~--g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 83 (470)
T 1dxl_A 6 ENDVVIIGGGPGGYVAAIKAAQL--GFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEID 83 (470)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccC
Confidence 47999999999999999999998 8999999999654432 22111000 00 0011
Q ss_pred hhh--------------hHHHHHhc-CcEEEcceEEEEeCcccEEEeccC--cEEEecEEEEecCCCCCCCCCCC-ceee
Q psy1545 57 VEE--------------TDANKFEG-LCTVIVDTVAAIDPRVNCVITEKQ--NRIKYKTLCICTGASPRKIWYSP-HVIT 118 (454)
Q Consensus 57 ~~~--------------~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lviAtG~~p~~~~~~~-~~~~ 118 (454)
+.. .....+.+ +++++.+++..++++...|.+.+| ..++||+||+|||++|+.|++++ ....
T Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~~g~~~~~ 163 (470)
T 1dxl_A 84 LAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKK 163 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCBTTBCCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCccc
Confidence 100 01122333 899998877778877666666566 68999999999999998887761 1112
Q ss_pred eeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhh
Q psy1545 119 IRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETI 196 (454)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~ 196 (454)
+.+..++..+. ..+++++|||+|++|+|+|..|. |.+|+++++.+++++. +++++.+.+.+.+.+
T Consensus 164 v~~~~~~~~~~---~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~--------- 230 (470)
T 1dxl_A 164 IVSSTGALALS---EIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRSLEK--------- 230 (470)
T ss_dssp EECHHHHTTCS---SCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH---------
T ss_pred EEeHHHhhhhh---hcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-ccHHHHHHHHHHHHH---------
Confidence 34444444432 24899999999999999999986 9999999999998884 788888877777755
Q ss_pred hhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec---CC--cEEecCEEEEee
Q psy1545 197 FKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---NG--HTHACDIVVSAI 271 (454)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g--~~~~~D~vi~a~ 271 (454)
.||++++++.+.+++.+++ .+.+.++ +| +++++|.|++|+
T Consensus 231 --------------------------------~gv~i~~~~~v~~i~~~~~---~~~v~~~~~~~g~~~~~~~D~vv~a~ 275 (470)
T 1dxl_A 231 --------------------------------QGMKFKLKTKVVGVDTSGD---GVKLTVEPSAGGEQTIIEADVVLVSA 275 (470)
T ss_dssp --------------------------------SSCCEECSEEEEEEECSSS---SEEEEEEESSSCCCEEEEESEEECCC
T ss_pred --------------------------------cCCEEEeCCEEEEEEEcCC---eEEEEEEecCCCcceEEECCEEEECC
Confidence 8999999999999987653 3556654 45 689999999999
Q ss_pred ccCcCcccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 272 GVVPNSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 272 G~~p~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
|++|+.+ + ++..+++++++|+|.||+++||+.|+|||+|||+..+ ++++.|..||++||.||++...
T Consensus 276 G~~p~~~-~l~~~~~gl~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~ 344 (470)
T 1dxl_A 276 GRTPFTS-GLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP----------MLAHKAEEDGVACVEYLAGKVG 344 (470)
T ss_dssp CEEECCT-TSCCTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSC----------CCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCcCCC-CCCchhcCCccCCCCCEeECcCCccCCCCEEEEeccCCCC----------ccHHHHHHHHHHHHHHHcCCCc
Confidence 9999998 6 6777888888899999999999999999999998743 5788999999999999997421
Q ss_pred CCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCC--ceEEEe----------ecCCccEEEEEEE--CCeEEEEEE
Q psy1545 350 NEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEND--YEILLR----------VTRGEEYIKLVMK--DGRMQGAVL 415 (454)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~--~~~~~~----------~~~~~~~~k~~~~--~~~i~G~~~ 415 (454)
...+..+|+ ..+++.+++++|+++.++...+ +.+... .....+|+|++++ +++|+|+|+
T Consensus 345 -~~~~~~~p~------~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~ 417 (470)
T 1dxl_A 345 -HVDYDKVPG------VVYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHI 417 (470)
T ss_dssp -CCCTTSCCE------EECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEE
T ss_pred -CCCCCCCCE------EEECCCceEEEcCCHHHHHhcCCcEEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEE
Confidence 111112233 3445669999999987664333 322211 1235689999994 899999999
Q ss_pred EcCC--chHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 416 IGET--EIEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 416 ~g~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
+|+. +.++.+..+|++++|++++.+. .++++++.+
T Consensus 418 ~g~~a~~~i~~~~~ai~~~~~~~~l~~~-~~~~Pt~~e 454 (470)
T 1dxl_A 418 MAPNAGELIHEAAIALQYDASSEDIARV-CHAHPTMSE 454 (470)
T ss_dssp EETTHHHHHHHHHHHHHTTCBHHHHHTS-CCCSSCTTH
T ss_pred ECCCHHHHHHHHHHHHHCCCCHHHHhhc-ccCCCChHH
Confidence 9998 4679999999999999999765 445555443
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=404.37 Aligned_cols=385 Identities=16% Similarity=0.190 Sum_probs=281.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC---------cccccccccccc---------------------cc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG---------IVKAVTKTVPVT---------------------KL 51 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~---------~~~~~~~~~~~~---------------------~~ 51 (454)
++||+|||||+||++||..|++. |.+|+|||+.+ ..+.|.+..+.+ ..
T Consensus 32 ~~DVvVIGgGpaGl~aA~~la~~--G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~ 109 (519)
T 3qfa_A 32 DYDLIIIGGGSGGLAAAKEAAQY--GKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWK 109 (519)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHT--TCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred CCCEEEECCCHHHHHHHHHHHhC--CCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCcc
Confidence 48999999999999999999998 89999999853 222232221110 00
Q ss_pred c---cccchh------hhH--------HHHHhc-CcEEEcceEEEEeCcccEEEeccCc--EEEecEEEEecCCCCCCCC
Q psy1545 52 L---SDITVE------ETD--------ANKFEG-LCTVIVDTVAAIDPRVNCVITEKQN--RIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 52 ~---~~~~~~------~~~--------~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lviAtG~~p~~~~ 111 (454)
. ...++. ... ...+.. +++++.+.+.++++....|...+|+ ++.||+||||||++|+.|+
T Consensus 110 ~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~~p~ 189 (519)
T 3qfa_A 110 VEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLG 189 (519)
T ss_dssp CCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEECCCC
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcCCCC
Confidence 0 011111 111 112233 9999999999999988788776664 7999999999999999998
Q ss_pred CCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccC
Q psy1545 112 YSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTN 189 (454)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~ 189 (454)
++.....+.+.+++..+. ..+++++|||+|++|+|+|..+. |.+||+++++ .+++. +|+++.+.+.+.+.+
T Consensus 190 i~G~~~~~~t~~~~~~l~---~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~~~~~l~~-- 262 (519)
T 3qfa_A 190 IPGDKEYCISSDDLFSLP---YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG-FDQDMANKIGEHMEE-- 262 (519)
T ss_dssp CTTHHHHCBCHHHHTTCS---SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-SCHHHHHHHHHHHHH--
T ss_pred CCCccCceEcHHHHhhhh---hcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-ccccc-CCHHHHHHHHHHHHH--
Confidence 873111233444444332 24789999999999999999987 9999999985 56654 688888888777755
Q ss_pred CCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCC-CccceEE--EecCC---cEEe
Q psy1545 190 TAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSED-DTCNAYV--KLTNG---HTHA 263 (454)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~~~~v--~~~~g---~~~~ 263 (454)
.||++++++.+.++...++ ....+.+ ...+| .+++
T Consensus 263 ---------------------------------------~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~ 303 (519)
T 3qfa_A 263 ---------------------------------------HGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGE 303 (519)
T ss_dssp ---------------------------------------TTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEE
T ss_pred ---------------------------------------CCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEE
Confidence 8999999988877765321 0112333 34455 2578
Q ss_pred cCEEEEeeccCcCcccc--cCCCCceec-CCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHH
Q psy1545 264 CDIVVSAIGVVPNSNIQ--VHGTPFELA-PDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYA 340 (454)
Q Consensus 264 ~D~vi~a~G~~p~~~~~--~~~~~l~~~-~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~a 340 (454)
+|.|++|+|++|+.+ + ++..+++++ ++|+|.||+++||+.|||||+|||+... +++++.|..||++|
T Consensus 304 ~D~vi~a~G~~p~~~-~l~l~~~gl~~~~~~G~I~Vd~~~~Ts~~~IyA~GD~~~g~---------~~~~~~A~~~g~~a 373 (519)
T 3qfa_A 304 YNTVMLAIGRDACTR-KIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDK---------VELTPVAIQAGRLL 373 (519)
T ss_dssp ESEEEECSCEEESCS-SSCSTTTTCCCCTTTCCBCCCTTSBCSSTTEEECGGGBSSS---------CCCHHHHHHHHHHH
T ss_pred CCEEEEecCCcccCC-CCChhhcCcEEcCCCCeEeeCCCCccCCCCEEEEEeccCCC---------CccHHHHHHHHHHH
Confidence 999999999999998 5 567788887 5799999999999999999999998432 46889999999999
Q ss_pred HhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC----CceEE---Ee--------ecCCccEEEEEE
Q psy1545 341 AKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN----DYEIL---LR--------VTRGEEYIKLVM 405 (454)
Q Consensus 341 a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~----~~~~~---~~--------~~~~~~~~k~~~ 405 (454)
|+||++.......+..+|..+|+.+ +++.+|+++.++... .+.+. +. .....+|+|+++
T Consensus 374 a~~i~g~~~~~~~~~~~p~~~~~~p------~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~ 447 (519)
T 3qfa_A 374 AQRLYAGSTVKCDYENVPTTVFTPL------EYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIIC 447 (519)
T ss_dssp HHHHHSCCCCCCCCTTCCEEECSSS------CEEEEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTTEEEEEEE
T ss_pred HHHHcCCCCccCCCCcCcEEEECCC------ceEEecCCHHHHHhhCCCCCEEEEEEeccchhhhhhccCCCcEEEEEEE
Confidence 9999975433223334555555544 999999999876532 23221 11 012468999999
Q ss_pred E---CCeEEEEEEEcCC--chHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 406 K---DGRMQGAVLIGET--EIEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 406 ~---~~~i~G~~~~g~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
+ +++|||+|++|+. +.++.++.+|++++|++||.+. .++++++++
T Consensus 448 ~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~~~~t~~~l~~~-~~~hPt~~E 497 (519)
T 3qfa_A 448 NTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDST-IGIHPVCAE 497 (519)
T ss_dssp ETTTTCEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHS-CCCTTCGGG
T ss_pred ecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcc-ccCCCChHH
Confidence 4 5999999999997 4678999999999999999664 445555555
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-49 Score=400.61 Aligned_cols=382 Identities=18% Similarity=0.227 Sum_probs=283.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC---C-------cccccccccccc---------------------c
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS---G-------IVKAVTKTVPVT---------------------K 50 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~---~-------~~~~~~~~~~~~---------------------~ 50 (454)
++||+|||||+||++||..|++. |.+|+|||+. + ..+.|.++.+.+ .
T Consensus 9 ~~DvvVIGgG~aGl~aA~~la~~--G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~ 86 (483)
T 3dgh_A 9 DYDLIVIGGGSAGLACAKEAVLN--GARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGW 86 (483)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHT--TCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred CCCEEEECcCHHHHHHHHHHHHC--CCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCc
Confidence 58999999999999999999998 8999999942 1 233333221111 0
Q ss_pred cc---cccchh------hhHH--------HHHhc-CcEEEcceEEEEeCcccEEEeccCc-EEEecEEEEecCCCCCCCC
Q psy1545 51 LL---SDITVE------ETDA--------NKFEG-LCTVIVDTVAAIDPRVNCVITEKQN-RIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 51 ~~---~~~~~~------~~~~--------~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~-~i~~d~lviAtG~~p~~~~ 111 (454)
.. ...++. .... ..+.. +++++.+.+.++++....|.+.+|. .+.||+||||||++|+.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p~~p~ 166 (483)
T 3dgh_A 87 NVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPD 166 (483)
T ss_dssp CCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEECCCEEECCCS
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCcCCCC
Confidence 00 011111 1111 12233 8999999999999888778776674 7999999999999999988
Q ss_pred CCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccC
Q psy1545 112 YSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTN 189 (454)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~ 189 (454)
++..-....+.+++..+. ..+++++|||+|++|+|+|..+. |.+|+++++. .+++. +++++.+.+.+.+.+
T Consensus 167 i~G~~~~~~~~~~~~~~~---~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~-~d~~~~~~l~~~l~~-- 239 (483)
T 3dgh_A 167 IPGAVEYGITSDDLFSLD---REPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS-IVLRG-FDQQMAELVAASMEE-- 239 (483)
T ss_dssp STTHHHHCBCHHHHTTCS---SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-CSSTT-SCHHHHHHHHHHHHH--
T ss_pred CCCcccccCcHHHHhhhh---hcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC-CCCcc-cCHHHHHHHHHHHHh--
Confidence 872111122444444332 24899999999999999999987 9999999984 55553 688888888777755
Q ss_pred CCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCc-----EEec
Q psy1545 190 TAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGH-----THAC 264 (454)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~-----~~~~ 264 (454)
.||++++++.+.+++..++ ..+.+.+.++. ++++
T Consensus 240 ---------------------------------------~Gv~i~~~~~v~~i~~~~~--~~~~v~~~~~~~~~~~~~~~ 278 (483)
T 3dgh_A 240 ---------------------------------------RGIPFLRKTVPLSVEKQDD--GKLLVKYKNVETGEESEDVY 278 (483)
T ss_dssp ---------------------------------------TTCCEEETEEEEEEEECTT--SCEEEEEEETTTCCEEEEEE
T ss_pred ---------------------------------------CCCEEEeCCEEEEEEEcCC--CcEEEEEecCCCCceeEEEc
Confidence 8999999999999987542 23567776653 7999
Q ss_pred CEEEEeeccCcCccccc--CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHh
Q psy1545 265 DIVVSAIGVVPNSNIQV--HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAK 342 (454)
Q Consensus 265 D~vi~a~G~~p~~~~~~--~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~ 342 (454)
|.|++|+|++|+.+ ++ +..++++++ |+|.||+++||+.|+|||+|||+... +++++.|..||++||+
T Consensus 279 D~vi~a~G~~p~~~-~l~l~~~gl~~~~-G~i~vd~~~~t~~~~IyA~GD~~~~~---------~~~~~~A~~~g~~aa~ 347 (483)
T 3dgh_A 279 DTVLWAIGRKGLVD-DLNLPNAGVTVQK-DKIPVDSQEATNVANIYAVGDIIYGK---------PELTPVAVLAGRLLAR 347 (483)
T ss_dssp SEEEECSCEEECCG-GGTGGGTTCCCBT-TBBCCCTTCBCSSTTEEECSTTBTTS---------CCCHHHHHHHHHHHHH
T ss_pred CEEEECcccccCcC-cCCchhcCccccC-CEEEECcCCccCCCCEEEEEcccCCC---------CccHHHHHHHHHHHHH
Confidence 99999999999998 65 667888887 99999999999999999999998432 3678899999999999
Q ss_pred hhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC----CceEEE---ee--------cCCccEEEEEEE-
Q psy1545 343 CMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN----DYEILL---RV--------TRGEEYIKLVMK- 406 (454)
Q Consensus 343 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~----~~~~~~---~~--------~~~~~~~k~~~~- 406 (454)
||++.......+..+|+.+|+.+ +++.+|+++.++... .+.+.. .. ....+|+|++++
T Consensus 348 ~i~g~~~~~~~~~~~p~~~~~~p------~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~ 421 (483)
T 3dgh_A 348 RLYGGSTQRMDYKDVATTVFTPL------EYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAER 421 (483)
T ss_dssp HHHSCCCCCCCCTTCCEEECSSS------EEEEEECCHHHHHHHHCGGGEEEEEEECCCGGGTTTTCCCTTCEEEEEEES
T ss_pred HHcCCCCCcCCCCCCCEEEECCC------ccEEEeCCHHHHHhhCCCCCEEEEEEeecchhhhhhccCCCcEEEEEEEec
Confidence 99986432223334566666655 899999999776532 222221 00 124689999993
Q ss_pred --CCeEEEEEEEcCC--chHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 407 --DGRMQGAVLIGET--EIEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 407 --~~~i~G~~~~g~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
+++|||+|++|+. +.++.++.+|++++|++||.+. .++++++.+
T Consensus 422 ~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~-~~~hPt~~e 469 (483)
T 3dgh_A 422 HGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINT-VGIHPTTAE 469 (483)
T ss_dssp STTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTS-CCCSSCSGG
T ss_pred CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc-ccCCCChHH
Confidence 5999999999997 4578999999999999999764 445555555
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=400.41 Aligned_cols=378 Identities=18% Similarity=0.239 Sum_probs=283.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccc-------------------cc----cccchh
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTK-------------------LL----SDITVE 58 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~-------------------~~----~~~~~~ 58 (454)
++||+|||||++|+++|..|++. +.+|+|||+++..+.|.+..+.+. .+ ...++.
T Consensus 4 ~~dVvIIGgG~aGl~aA~~l~~~--g~~V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (463)
T 2r9z_A 4 HFDLIAIGGGSGGLAVAEKAAAF--GKRVALIESKALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDWP 81 (463)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCHH
T ss_pred cCcEEEECCCHHHHHHHHHHHhC--CCcEEEEcCCCCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence 48999999999999999999997 899999999865444332211000 00 001110
Q ss_pred ----------hh----HHHHHhc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCCCceeeeeccc
Q psy1545 59 ----------ET----DANKFEG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSPHVITIRDTD 123 (454)
Q Consensus 59 ----------~~----~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~~~~~~~~~~~ 123 (454)
.. ....+.+ +++++.+++..++. +.|.+ +++++.||+||||||++|+.|+++.. ..+.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~~p~i~G~-~~~~~~~ 157 (463)
T 2r9z_A 82 RLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDA--HTIEV-EGQRLSADHIVIATGGRPIVPRLPGA-ELGITSD 157 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET--TEEEE-TTEEEEEEEEEECCCEEECCCSCTTG-GGSBCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccC--CEEEE-CCEEEEcCEEEECCCCCCCCCCCCCc-cceecHH
Confidence 00 1112233 89999988888875 45666 67789999999999999998887732 1233444
Q ss_pred hHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcc
Q psy1545 124 SVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMR 201 (454)
Q Consensus 124 ~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~ 201 (454)
++..+. ..+++++|||+|.+|+|+|..|. |.+|+++++.+++++. +++++...+.+.+.+
T Consensus 158 ~~~~~~---~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~-------------- 219 (463)
T 2r9z_A 158 GFFALQ---QQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLLSATLAENMHA-------------- 219 (463)
T ss_dssp HHHHCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH--------------
T ss_pred HHhhhh---ccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc-cCHHHHHHHHHHHHH--------------
Confidence 544432 24899999999999999999986 9999999999998874 677777777777654
Q ss_pred cccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCc-EEecCEEEEeeccCcCcccc
Q psy1545 202 YNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGH-THACDIVVSAIGVVPNSNIQ 280 (454)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~-~~~~D~vi~a~G~~p~~~~~ 280 (454)
.||++++++.+++++.+++ .+.+.+++|+ ++++|.|++|+|++|+.+ +
T Consensus 220 ---------------------------~gv~i~~~~~v~~i~~~~~---~~~v~~~~G~~~i~~D~vv~a~G~~p~~~-~ 268 (463)
T 2r9z_A 220 ---------------------------QGIETHLEFAVAALERDAQ---GTTLVAQDGTRLEGFDSVIWAVGRAPNTR-D 268 (463)
T ss_dssp ---------------------------TTCEEESSCCEEEEEEETT---EEEEEETTCCEEEEESEEEECSCEEESCT-T
T ss_pred ---------------------------CCCEEEeCCEEEEEEEeCC---eEEEEEeCCcEEEEcCEEEECCCCCcCCC-C
Confidence 8999999999999987543 3678888998 899999999999999987 4
Q ss_pred c--CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC-cceecc
Q psy1545 281 V--HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE-PVIQDF 357 (454)
Q Consensus 281 ~--~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~-~~~~~~ 357 (454)
+ +..+++++++|+|.||+++||+.|+|||+|||++. +++++.|..||+.+|.||++..... ..+..+
T Consensus 269 l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~----------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~ 338 (463)
T 2r9z_A 269 LGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDITGR----------DQLTPVAIAAGRRLAERLFDGQSERKLDYDNI 338 (463)
T ss_dssp SCHHHHTCCCCTTSCCCCCTTSBCSSTTEEECGGGGTS----------CCCHHHHHHHHHHHHHHHHSCCTTCCCCCSSC
T ss_pred CCchhcCCccCCCCCEeECCCCccCCCCEEEEeecCCC----------cccHHHHHHHHHHHHHHHcCCCCcccCCCCCC
Confidence 3 45678888889999999999999999999999863 3578899999999999999743211 122234
Q ss_pred ceeeeeeeeeecCeEEEEeecccCCcCC---CCceEEEe----------ecCCccEEEEEEE--CCeEEEEEEEcCCc--
Q psy1545 358 SFEMFTHMTKFFGYKVILLGLFNGQTLE---NDYEILLR----------VTRGEEYIKLVMK--DGRMQGAVLIGETE-- 420 (454)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~vG~~~~~~~~---~~~~~~~~----------~~~~~~~~k~~~~--~~~i~G~~~~g~~~-- 420 (454)
|..+|+. .+++++|+++.++.. ..+.+... .....+|+|++++ +++|+|+|++|+..
T Consensus 339 p~~~~~~------~~~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~ 412 (463)
T 2r9z_A 339 PTVVFAH------PPLSKVGLSEPEARERLGDVLTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGADE 412 (463)
T ss_dssp CEEECCS------SCEEEEECCHHHHHHHHCSCEEEEEEEECCGGGTTSSSCCCEEEEEEEETTTTEEEEEEEESTTGGG
T ss_pred CEEEeCC------CCeEEEcCCHHHHHhcCCCCEEEEEEEcccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHH
Confidence 5545544 489999998866542 22332210 1235689999994 89999999999873
Q ss_pred hHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 421 IEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 421 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
.++.++.+|++++|++++.+. .++++++.+
T Consensus 413 ~i~~~~~ai~~~~t~~~l~~~-~~~hPt~~e 442 (463)
T 2r9z_A 413 MLQGFAVAVKMGATKADFDNT-VAIHPGSAE 442 (463)
T ss_dssp TSHHHHHHHHTTCBHHHHHTS-CCCSSSSGG
T ss_pred HHHHHHHHHHCCCCHHHHhcC-ccCCCCHHH
Confidence 578999999999999999665 555666555
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=387.55 Aligned_cols=344 Identities=19% Similarity=0.281 Sum_probs=266.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc----ccccchhhhHHHHHhc-CcEEEcc-eE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL----LSDITVEETDANKFEG-LCTVIVD-TV 76 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~i~~~~~-~v 76 (454)
.|++|||||+||++||..|++. + +|+|||+++...+ ..+.++.. ....++.....+++.+ +++++.+ +|
T Consensus 9 ~~vvIIGgG~AGl~aA~~l~~~--g-~V~lie~~~~~~~--~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v 83 (367)
T 1xhc_A 9 SKVVIVGNGPGGFELAKQLSQT--Y-EVTVIDKEPVPYY--SKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEA 83 (367)
T ss_dssp CEEEEECCSHHHHHHHHHHTTT--S-EEEEECSSSSCCC--CSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCE
T ss_pred CcEEEECCcHHHHHHHHHHhhc--C-CEEEEECCCCCcc--ccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEE
Confidence 5899999999999999999998 6 9999999987542 11111111 1111122223344555 9999887 79
Q ss_pred EEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC--CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHh
Q psy1545 77 AAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS--PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHEL 154 (454)
Q Consensus 77 ~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l 154 (454)
+.++++.+.|. .+++++.||+||||||++|+.|+++ ++++++.+.+++.++.+.+.++++++|||+|++|+|+|..|
T Consensus 84 ~~id~~~~~V~-~~g~~~~~d~lViATGs~p~~p~i~G~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l 162 (367)
T 1xhc_A 84 KLIDRGRKVVI-TEKGEVPYDTLVLATGARAREPQIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNL 162 (367)
T ss_dssp EEEETTTTEEE-ESSCEEECSEEEECCCEEECCCCSBTGGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHH
T ss_pred EEEECCCCEEE-ECCcEEECCEEEECCCCCCCCCCCCCcCCEEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHH
Confidence 99999988888 6788999999999999999998887 46777778888888877666679999999999999999998
Q ss_pred c--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceE
Q psy1545 155 S--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKIT 232 (454)
Q Consensus 155 ~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~ 232 (454)
. |.+|+++++.+++++ +++++.+.+.+.+++ .||+
T Consensus 163 ~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~-----------------------------------------~gV~ 199 (367)
T 1xhc_A 163 AEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEE-----------------------------------------TGVK 199 (367)
T ss_dssp HHTTCEEEEECSSSCCTT--CCHHHHHHHHHHHHH-----------------------------------------TTEE
T ss_pred HhCCCEEEEEeCCCeecc--CCHHHHHHHHHHHHH-----------------------------------------CCCE
Confidence 6 999999999999887 788888888777755 8999
Q ss_pred EEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCceeecCc
Q psy1545 233 IEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGD 312 (454)
Q Consensus 233 i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD 312 (454)
+++++++++++.+ .+.+++|+ +++|.|++|+|++|+.+ +++..+++++ + +|.||+++||+.|+|||+||
T Consensus 200 i~~~~~v~~i~~~-------~v~~~~g~-i~~D~vi~a~G~~p~~~-ll~~~gl~~~-~-gi~Vd~~~~t~~~~IyA~GD 268 (367)
T 1xhc_A 200 FFLNSELLEANEE-------GVLTNSGF-IEGKVKICAIGIVPNVD-LARRSGIHTG-R-GILIDDNFRTSAKDVYAIGD 268 (367)
T ss_dssp EECSCCEEEECSS-------EEEETTEE-EECSCEEEECCEEECCH-HHHHTTCCBS-S-SEECCTTSBCSSTTEEECGG
T ss_pred EEcCCEEEEEEee-------EEEECCCE-EEcCEEEECcCCCcCHH-HHHhCCCCCC-C-CEEECCCcccCCCCEEEeEe
Confidence 9999999999732 36778887 99999999999999998 8888888874 4 49999999999999999999
Q ss_pred ccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEE
Q psy1545 313 VCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILL 392 (454)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~ 392 (454)
|+..... .+++++.|..||+.||+||++... .|.+.+.+.+..+++++++++|+++.++. + +
T Consensus 269 ~a~~~~~------~~~~~~~A~~qg~~aa~~i~g~~~------~~~~~~~~~~~~~~~~~~~~vG~~~~~~~----~-~- 330 (367)
T 1xhc_A 269 CAEYSGI------IAGTAKAAMEQARVLADILKGEPR------RYNFKFRSTVFKFGKLQIAIIGNTKGEGK----W-I- 330 (367)
T ss_dssp GEEBTTB------CCCSHHHHHHHHHHHHHHHTTCCC------CCCSSCCEEEEEETTEEEEEEECCSSCEE----E-E-
T ss_pred eeecCCC------CccHHHHHHHHHHHHHHHhcCCCc------cCCCCCCceEEEECCceEEEECCCCCCCc----c-c-
Confidence 9874211 135889999999999999997421 22222222234678889999999886431 1 1
Q ss_pred eecCCccEEEEEEECCeEEEEEEEcCCchHHHHHHHH
Q psy1545 393 RVTRGEEYIKLVMKDGRMQGAVLIGETEIEEMCENLI 429 (454)
Q Consensus 393 ~~~~~~~~~k~~~~~~~i~G~~~~g~~~~~~~~~~~i 429 (454)
.+|+|+++++++|+|++++|+......+..+|
T Consensus 331 -----~~~~k~~~~~~~ilG~~~~g~~~~~~~~~~~i 362 (367)
T 1xhc_A 331 -----EDNTKVFYENGKIIGAVVFNDIRKATKLEKEI 362 (367)
T ss_dssp -----ETTEEEEC-----CEEEEESCHHHHHHHC---
T ss_pred -----ceEEEEEEECCEEEEEEEECChHHHHHHHHHH
Confidence 57999999889999999999987766666655
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=403.16 Aligned_cols=379 Identities=17% Similarity=0.189 Sum_probs=283.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccc-------------------cc----cccchh
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTK-------------------LL----SDITVE 58 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~-------------------~~----~~~~~~ 58 (454)
++||+|||||+||++||..|++. |.+|+|||+++..+.|.++.+.+. .+ ...++.
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~--G~~V~liE~~~~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 85 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKH--TDKVVLIEGGAYGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVNGK 85 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTT--CSCEEEEESSCSSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEECHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhC--CCcEEEEeCCCCCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccCHH
Confidence 37999999999999999999998 899999999886665543211110 00 001110
Q ss_pred ---h-------hH----HHHHhc--CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC-Cceeeeec
Q psy1545 59 ---E-------TD----ANKFEG--LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS-PHVITIRD 121 (454)
Q Consensus 59 ---~-------~~----~~~~~~--~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~-~~~~~~~~ 121 (454)
. .. ...+.. +++++.+++.+.+.. +|.+.+++++.||+||||||++|+.|+++ .....+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~--~v~~~~~~~~~~d~lViATGs~p~~p~~~~~~~~~v~t 163 (492)
T 3ic9_A 86 AVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEH--TLQVDDHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLT 163 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETT--EEEETTTEEEEEEEEEECCCEECCCCHHHHTTGGGEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCC--EEEEcCCcEEEeCEEEEccCCCCcCCCCCCccCCcEEc
Confidence 0 01 111122 556778888888754 57777788999999999999999988754 21222344
Q ss_pred cchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhh
Q psy1545 122 TDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKR 199 (454)
Q Consensus 122 ~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~ 199 (454)
.+++..+. ..+++++|||+|++|+|+|..|. |.+|+++++++++++. +++++.+.+.+.+.+
T Consensus 164 ~~~~~~~~---~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~------------ 227 (492)
T 3ic9_A 164 NDNLFELN---DLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL-QDEEMKRYAEKTFNE------------ 227 (492)
T ss_dssp HHHHTTCS---SCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC-CCHHHHHHHHHHHHT------------
T ss_pred HHHHhhhh---hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-CCHHHHHHHHHHHhh------------
Confidence 44444432 23899999999999999999997 9999999999998874 688888888777754
Q ss_pred cccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec--CC--cEEecCEEEEeeccCc
Q psy1545 200 MRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT--NG--HTHACDIVVSAIGVVP 275 (454)
Q Consensus 200 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~--~g--~~~~~D~vi~a~G~~p 275 (454)
. |++++++.+++++.+++ .+.+.+. +| +++++|.|++|+|++|
T Consensus 228 -----------------------------~-V~i~~~~~v~~i~~~~~---~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p 274 (492)
T 3ic9_A 228 -----------------------------E-FYFDAKARVISTIEKED---AVEVIYFDKSGQKTTESFQYVLAATGRKA 274 (492)
T ss_dssp -----------------------------T-SEEETTCEEEEEEECSS---SEEEEEECTTCCEEEEEESEEEECSCCEE
T ss_pred -----------------------------C-cEEEECCEEEEEEEcCC---EEEEEEEeCCCceEEEECCEEEEeeCCcc
Confidence 6 99999999999987653 3556664 67 6899999999999999
Q ss_pred Ccccc--cCCCCceecCCCceEec-cccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCc
Q psy1545 276 NSNIQ--VHGTPFELAPDCGIGVN-ELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEP 352 (454)
Q Consensus 276 ~~~~~--~~~~~l~~~~~g~i~vd-~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~ 352 (454)
+.+ + ++..+++++++|+|.|| +++||+.|+|||+|||++.+ ++++.|..||++||.||++.....+
T Consensus 275 ~~~-~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~ 343 (492)
T 3ic9_A 275 NVD-KLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTL----------TLLHEAADDGKVAGTNAGAYPVIAQ 343 (492)
T ss_dssp SCS-SSCGGGSCCCBCTTCCBCCCTTTCBCSSTTEEECGGGGTSS----------CSHHHHHHHHHHHHHHHHHTTSCCE
T ss_pred CCC-CCChhhcCCEECCCCCEeECcccccCCCCCEEEEEecCCCC----------ccHHHHHHHHHHHHHHHcCCCCCcc
Confidence 998 6 66778899889999999 99999999999999999743 6788999999999999997322111
Q ss_pred -ceeccceeeeeeeeeecCeEEEEeecccCCcCCC-------CceEEEe----------ecCCccEEEEEE--ECCeEEE
Q psy1545 353 -VIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN-------DYEILLR----------VTRGEEYIKLVM--KDGRMQG 412 (454)
Q Consensus 353 -~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~-------~~~~~~~----------~~~~~~~~k~~~--~~~~i~G 412 (454)
.+...|..+|+ +++++.+|+++.++... .+.+... .....+|+|+++ ++++|+|
T Consensus 344 ~~~~~~p~~~~~------~p~~a~vGlte~~a~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~ilG 417 (492)
T 3ic9_A 344 GQRRAPLSVVFT------EPQVASVGLSLRQIEDLYADQDAANYVVGQVSFEGQGRSRVMGKNKGLLNVYADRTSGEFLG 417 (492)
T ss_dssp ECCCCCEEEECS------SSEEEEEESCHHHHHHHCSCSSSCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEE
T ss_pred cCCCCCcEEEEC------CCCeEEecCCHHHHHhccCccCCccEEEEEEEeccchhhhhcCCCcEEEEEEEECCCCEEEE
Confidence 11223444444 45999999999876533 3332211 123568999999 4799999
Q ss_pred EEEEcCCc--hHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 413 AVLIGETE--IEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 413 ~~~~g~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
+|++|+.. .++.++.+|++++|++||.+.+ ++++++++
T Consensus 418 ~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~-~~hPt~~e 457 (492)
T 3ic9_A 418 AEMFGPAAEHIGHLLAWARQQQMTVQAMLTMP-FYHPVIEE 457 (492)
T ss_dssp EEEEETTHHHHHHHHHHHHHTTCBHHHHTTSC-CCTTCTHH
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCHHHHhhCC-CCCCChHH
Confidence 99999983 5789999999999999997654 34444443
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=401.80 Aligned_cols=379 Identities=21% Similarity=0.270 Sum_probs=286.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccc---------------------c--ccccchh
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTK---------------------L--LSDITVE 58 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~---------------------~--~~~~~~~ 58 (454)
++||+|||||++|++||..|++. |.+|+|||+....+.|.+..+.+. . ....++.
T Consensus 26 ~~DVvVIGgG~aGl~aA~~la~~--G~~V~liEk~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 103 (484)
T 3o0h_A 26 DFDLFVIGSGSGGVRAARLAGAL--GKRVAIAEEYRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNWE 103 (484)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECHH
T ss_pred CCCEEEECcCHHHHHHHHHHHhC--cCEEEEEeCCCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCHH
Confidence 37999999999999999999998 899999999665554433211110 0 0001111
Q ss_pred ----------hh----HHHHHhc-CcEEEcceEEEEeCcccEEEec-cCcEEEecEEEEecCCCCC-CCCCCCceeeeec
Q psy1545 59 ----------ET----DANKFEG-LCTVIVDTVAAIDPRVNCVITE-KQNRIKYKTLCICTGASPR-KIWYSPHVITIRD 121 (454)
Q Consensus 59 ----------~~----~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~-~g~~i~~d~lviAtG~~p~-~~~~~~~~~~~~~ 121 (454)
.. ....+.. +++++.+++..+++. .+.+. +++.+.||++|+|||++|. .|+++..- .+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~--~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~-~~~~ 180 (484)
T 3o0h_A 104 KLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEH--TLELSVTGERISAEKILIATGAKIVSNSAIKGSD-LCLT 180 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETT--EEEETTTCCEEEEEEEEECCCEEECCC--CBTGG-GSBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCC--EEEEecCCeEEEeCEEEEccCCCcccCCCCCCcc-cccc
Confidence 01 1122233 899999999999865 46665 6789999999999999998 77776211 2334
Q ss_pred cchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhh
Q psy1545 122 TDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKR 199 (454)
Q Consensus 122 ~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~ 199 (454)
.+++..+.. .+++++|||+|++|+|+|..+. |.+|+++++.+++++. +++++...+.+.+.+
T Consensus 181 ~~~~~~~~~---~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~------------ 244 (484)
T 3o0h_A 181 SNEIFDLEK---LPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRN-FDYDLRQLLNDAMVA------------ 244 (484)
T ss_dssp TTTGGGCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH------------
T ss_pred HHHHHhHHh---cCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccc-cCHHHHHHHHHHHHH------------
Confidence 444444332 3899999999999999999886 9999999999998875 688887777777755
Q ss_pred cccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCccc
Q psy1545 200 MRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNI 279 (454)
Q Consensus 200 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~ 279 (454)
.||++++++.|++++.+++ .+.+.+++|+++++|.||+|+|++|+..
T Consensus 245 -----------------------------~Gv~i~~~~~V~~i~~~~~---~v~v~~~~g~~i~aD~Vi~A~G~~p~~~- 291 (484)
T 3o0h_A 245 -----------------------------KGISIIYEATVSQVQSTEN---CYNVVLTNGQTICADRVMLATGRVPNTT- 291 (484)
T ss_dssp -----------------------------HTCEEESSCCEEEEEECSS---SEEEEETTSCEEEESEEEECCCEEECCT-
T ss_pred -----------------------------CCCEEEeCCEEEEEEeeCC---EEEEEECCCcEEEcCEEEEeeCCCcCCC-
Confidence 8999999999999987653 4678889998999999999999999997
Q ss_pred c--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceecc
Q psy1545 280 Q--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDF 357 (454)
Q Consensus 280 ~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~ 357 (454)
+ ++..|++++++|+|.||+++||+.|+|||+|||++. +++++.|..||+++|+||++.......+..+
T Consensus 292 ~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~----------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~ 361 (484)
T 3o0h_A 292 GLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVTGH----------IQLTPVAIHDAMCFVKNAFENTSTTPDYDLI 361 (484)
T ss_dssp TCCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGTS----------CCCHHHHHHHHHHHHHHHHC---CCCCCTTC
T ss_pred CCChhhcCceECCCCCEeECCCCCCCCCCEEEEEecCCC----------CcCHHHHHHHHHHHHHHHcCCCCCcCCCCCC
Confidence 5 456688888899999999999999999999999874 3688899999999999999854322233345
Q ss_pred ceeeeeeeeeecCeEEEEeecccCCcCCCCc--eEEE---e-------ecCCccEEEEEE--ECCeEEEEEEEcCC--ch
Q psy1545 358 SFEMFTHMTKFFGYKVILLGLFNGQTLENDY--EILL---R-------VTRGEEYIKLVM--KDGRMQGAVLIGET--EI 421 (454)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~--~~~~---~-------~~~~~~~~k~~~--~~~~i~G~~~~g~~--~~ 421 (454)
|..+|+.+ +++.+|+++.++...+. .+.. . .....+|+|+++ ++++|+|+|++|+. +.
T Consensus 362 p~~~~~~p------~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~ 435 (484)
T 3o0h_A 362 TTAVFSQP------EIGTVGLSEEDALHRYKRVEIYRTVFRPMRNVLSGSPEKMFMKLVVDGESRIVVGAHVLGENAGEI 435 (484)
T ss_dssp CEEECCSS------CEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHTCCCCEEEEEEEETTTCBEEEEEEESTTHHHH
T ss_pred cEEEECCC------CEEEeeCCHHHHHHcCCCEEEEEecCCcchhhccCCCCcEEEEEEEECCCCEEEEEEEECcCHHHH
Confidence 66666554 89999999987654332 2211 1 113568999999 47999999999987 35
Q ss_pred HHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 422 EEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 422 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
++.++.+|++++|++|+.+. .++++++.+
T Consensus 436 i~~~~~ai~~~~t~~~l~~~-~~~hPt~~e 464 (484)
T 3o0h_A 436 AQLIGISLKGKLTKDIFDKT-MAVHPTMSE 464 (484)
T ss_dssp HHHHHHHHHTTCBHHHHHHS-CCCSSCSGG
T ss_pred HHHHHHHHHCCCCHHHHhcc-ccCCCChHH
Confidence 78899999999999999665 445555554
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-49 Score=399.80 Aligned_cols=378 Identities=22% Similarity=0.276 Sum_probs=282.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc-cccccccc------------------------cccccc--
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK-AVTKTVPV------------------------TKLLSD-- 54 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~-~~~~~~~~------------------------~~~~~~-- 54 (454)
++||+|||||++|+++|..|++. |.+|+|||+++.++ .|.+..+. +.....
T Consensus 43 ~~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 120 (523)
T 1mo9_A 43 EYDAIFIGGGAAGRFGSAYLRAM--GGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVV 120 (523)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhhh
Confidence 48999999999999999999998 89999999998433 32221111 000000
Q ss_pred --cchhhh----HH---HHH-----hc-CcEEE-cceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC-Ccee
Q psy1545 55 --ITVEET----DA---NKF-----EG-LCTVI-VDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS-PHVI 117 (454)
Q Consensus 55 --~~~~~~----~~---~~~-----~~-~i~~~-~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~-~~~~ 117 (454)
..+... .. ..+ .+ +++++ .+++.++++ +.|.+. ++.+.||+||+|||++|+.|+++ ....
T Consensus 121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~v~~~-g~~~~~d~lViATGs~p~~p~i~G~~~~ 197 (523)
T 1mo9_A 121 GIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HTVEAA-GKVFKAKNLILAVGAGPGTLDVPGVNAK 197 (523)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TEEEET-TEEEEBSCEEECCCEECCCCCSTTTTSB
T ss_pred hHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--CEEEEC-CEEEEeCEEEECCCCCCCCCCCCCcccC
Confidence 011111 11 344 45 89998 889999986 456664 77899999999999999998887 1111
Q ss_pred eeeccchHH-HHHHHhhcC-CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCCh
Q psy1545 118 TIRDTDSVA-VLQEKLKSA-KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKP 193 (454)
Q Consensus 118 ~~~~~~~~~-~l~~~~~~~-~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~ 193 (454)
.+.+.+++. .+.. .+ ++++|||+|++|+|+|..+. |.+|+++++.+++++. +++++...+.+.+.+
T Consensus 198 ~v~~~~~~~~~l~~---~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~------ 267 (523)
T 1mo9_A 198 GVFDHATLVEELDY---EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYVLDRMKE------ 267 (523)
T ss_dssp TEEEHHHHHHHCCS---CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHHHHHHHH------
T ss_pred cEeeHHHHHHHHHh---cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc-ccHHHHHHHHHHHHh------
Confidence 233445554 3322 25 99999999999999999986 9999999999998885 688887777777755
Q ss_pred hhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccc--eEEEecCCc-EEecCEEEEe
Q psy1545 194 ETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCN--AYVKLTNGH-THACDIVVSA 270 (454)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~--~~v~~~~g~-~~~~D~vi~a 270 (454)
.||++++++.|++++.+++ +.. +.+.+++|+ ++++|.||+|
T Consensus 268 -----------------------------------~GV~i~~~~~V~~i~~~~~-~~v~~~~v~~~~G~~~i~aD~Vv~A 311 (523)
T 1mo9_A 268 -----------------------------------QGMEIISGSNVTRIEEDAN-GRVQAVVAMTPNGEMRIETDFVFLG 311 (523)
T ss_dssp -----------------------------------TTCEEESSCEEEEEEECTT-SBEEEEEEEETTEEEEEECSCEEEC
T ss_pred -----------------------------------CCcEEEECCEEEEEEEcCC-CceEEEEEEECCCcEEEEcCEEEEC
Confidence 8999999999999987542 111 567888887 8999999999
Q ss_pred eccCcCcccccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCC
Q psy1545 271 IGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKN 350 (454)
Q Consensus 271 ~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 350 (454)
+|++|+.+.+++..|++++++|+|.||+++||+.|+|||+|||++.+ ++++.|..||++||.||++...
T Consensus 312 ~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~- 380 (523)
T 1mo9_A 312 LGEQPRSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGP----------MEMFKARKSGCYAARNVMGEKI- 380 (523)
T ss_dssp CCCEECCHHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSS----------CSHHHHHHHHHHHHHHHTTCCC-
T ss_pred cCCccCCccCHHHcCCccCCCCCEEECCCCccCCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHHcCCCC-
Confidence 99999985125666788888899999999999999999999999743 5788999999999999997421
Q ss_pred CcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEE-----ee-----------------------cCCccEEE
Q psy1545 351 EPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILL-----RV-----------------------TRGEEYIK 402 (454)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~-----~~-----------------------~~~~~~~k 402 (454)
...+..+|+.+| ++.+++++|+++.++...++++.. .. ....+|+|
T Consensus 381 ~~~~~~~p~~~~------~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 454 (523)
T 1mo9_A 381 SYTPKNYPDFLH------THYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQK 454 (523)
T ss_dssp CCCCCSCCEEEE------SSSEEEEEECCHHHHHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEE
T ss_pred CCCCCCCCeEEE------CCCceEEEeCCHHHHHhCCCCEEEEEEecccccccccccccccccccceEEeecCCCCEEEE
Confidence 111223444444 445899999998766433332221 11 22357999
Q ss_pred EEE--ECCeEEEEEEEcCCc--hHHHHHHHHhcCCCcchhhhh---ccCCCC
Q psy1545 403 LVM--KDGRMQGAVLIGETE--IEEMCENLILNQLDLTDIADD---LLNPNI 447 (454)
Q Consensus 403 ~~~--~~~~i~G~~~~g~~~--~~~~~~~~i~~~~~~~~~~~~---~~~~~~ 447 (454)
+++ ++++|+|+|++|+.. .++.++.+|++++|++++.+. ..||++
T Consensus 455 ~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~~Pt~ 506 (523)
T 1mo9_A 455 IVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTH 506 (523)
T ss_dssp EEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCC
T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHhCCcceECCCH
Confidence 999 479999999999974 479999999999999999776 245554
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-49 Score=397.67 Aligned_cols=381 Identities=18% Similarity=0.190 Sum_probs=280.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc-ccccc-------------------ccc-ccc-----cc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV-TKTVP-------------------VTK-LLS-----DI 55 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~-~~~~~-------------------~~~-~~~-----~~ 55 (454)
++||+|||||++|+++|..|++. |.+|+|||+++.+++. .+..+ +.. .+. ..
T Consensus 5 ~~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~ 82 (478)
T 1v59_A 5 SHDVVIIGGGPAGYVAAIKAAQL--GFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKI 82 (478)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcc
Confidence 48999999999999999999998 8999999996554332 11100 000 000 00
Q ss_pred chhh--------------hHHHHHhc-CcEEEcceEEEEeCcccEEEeccC--cE------EEecEEEEecCCCCCCCCC
Q psy1545 56 TVEE--------------TDANKFEG-LCTVIVDTVAAIDPRVNCVITEKQ--NR------IKYKTLCICTGASPRKIWY 112 (454)
Q Consensus 56 ~~~~--------------~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g--~~------i~~d~lviAtG~~p~~~~~ 112 (454)
++.. .....+.+ +++++.+.....+.+...|.+.+| +. +.||+||+|||++|+.++.
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~~~~g 162 (478)
T 1v59_A 83 NVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPG 162 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCCCCCC
Confidence 1100 01122334 899988877666655556666566 56 9999999999998854332
Q ss_pred -C-CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhcc
Q psy1545 113 -S-PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKT 188 (454)
Q Consensus 113 -~-~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~ 188 (454)
+ .+ ..+.+.+++..+.+ .+++++|||+|++|+|+|..|+ |.+||++++.+++++ .+++++.+.+.+.+.+
T Consensus 163 ~~~~~-~~v~~~~~~~~~~~---~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~- 236 (478)
T 1v59_A 163 IEIDE-EKIVSSTGALSLKE---IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA-SMDGEVAKATQKFLKK- 236 (478)
T ss_dssp CCCCS-SSEECHHHHTTCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS-SSCHHHHHHHHHHHHH-
T ss_pred CCCCC-ceEEcHHHHHhhhc---cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc-ccCHHHHHHHHHHHHH-
Confidence 2 22 23455555554432 3899999999999999999986 999999999999988 4788888888777755
Q ss_pred CCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEc--CCCCccceEEEec-----CCcE
Q psy1545 189 NTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVD--SEDDTCNAYVKLT-----NGHT 261 (454)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~--~~~~~~~~~v~~~-----~g~~ 261 (454)
.||++++++.++++.. +++ .+.+.++ ++++
T Consensus 237 ----------------------------------------~gv~i~~~~~v~~i~~~~~~~---~~~v~~~~~~~g~~~~ 273 (478)
T 1v59_A 237 ----------------------------------------QGLDFKLSTKVISAKRNDDKN---VVEIVVEDTKTNKQEN 273 (478)
T ss_dssp ----------------------------------------TTCEEECSEEEEEEEEETTTT---EEEEEEEETTTTEEEE
T ss_pred ----------------------------------------CCCEEEeCCEEEEEEEecCCC---eEEEEEEEcCCCCceE
Confidence 8999999999999986 432 4556665 4578
Q ss_pred EecCEEEEeeccCcCcc-cccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHH
Q psy1545 262 HACDIVVSAIGVVPNSN-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYA 340 (454)
Q Consensus 262 ~~~D~vi~a~G~~p~~~-~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~a 340 (454)
+++|.|++|+|++|+.+ .+++..|++++++|+|.||+++||+.|+|||+|||+..+ ++++.|..||+.|
T Consensus 274 ~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~a 343 (478)
T 1v59_A 274 LEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGP----------MLAHKAEEEGIAA 343 (478)
T ss_dssp EEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHH
T ss_pred EECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECcCCccCCCCEEEeeccCCCc----------ccHHHHHHHHHHH
Confidence 99999999999999986 245777888888899999999999999999999999743 5788999999999
Q ss_pred HhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCC--ceEEEe----------ecCCccEEEEEEE--
Q psy1545 341 AKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEND--YEILLR----------VTRGEEYIKLVMK-- 406 (454)
Q Consensus 341 a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~--~~~~~~----------~~~~~~~~k~~~~-- 406 (454)
|+||++... ...+..+|+.. +++.+++++|+++.++...+ +.+... .....+|+|++++
T Consensus 344 a~~i~~~~~-~~~~~~~p~~~------~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 416 (478)
T 1v59_A 344 VEMLKTGHG-HVNYNNIPSVM------YSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSK 416 (478)
T ss_dssp HHHHHHSCC-CCCTTSCCEEE------CSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETT
T ss_pred HHHHcCCCC-CCCCCCCCEEE------EcCCcEEEEECCHHHHHHcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECC
Confidence 999997421 11122234333 44559999999987764333 222211 1134689999994
Q ss_pred CCeEEEEEEEcCC--chHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 407 DGRMQGAVLIGET--EIEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 407 ~~~i~G~~~~g~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
+++|+|+|++|+. +.++.++.+|+++++++++.+. .++++++.+
T Consensus 417 ~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~-~~~~Pt~~e 462 (478)
T 1v59_A 417 TERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARV-CHAHPTLSE 462 (478)
T ss_dssp TCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTS-CCCTTCTTH
T ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC-CCCCCCHHH
Confidence 8999999999997 4579999999999999999654 556666554
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=385.34 Aligned_cols=371 Identities=19% Similarity=0.238 Sum_probs=275.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccc----------------------cc----ccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTK----------------------LL----SDI 55 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~----------------------~~----~~~ 55 (454)
++|++|||||+||++||..|++. +.+|+|||++...+.|.++.+.+. .+ ...
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 82 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQL--GIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRL 82 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHH--TCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCEEEEEccCCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCcc
Confidence 58999999999999999999998 899999999655443332211100 00 001
Q ss_pred chhh------h--------HHHHHhc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCC-CCCceeee
Q psy1545 56 TVEE------T--------DANKFEG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIW-YSPHVITI 119 (454)
Q Consensus 56 ~~~~------~--------~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~-~~~~~~~~ 119 (454)
++.. . ....+.+ +++++.+++..++. ++|.+++ +.+.||+||||||++|+.|+ ++... .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~--~~v~v~~-~~~~~d~lviATGs~p~~~~~~~~~~-~v 158 (458)
T 1lvl_A 83 DIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDG--KQVEVDG-QRIQCEHLLLATGSSSVELPMLPLGG-PV 158 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEET--TEEEETT-EEEECSEEEECCCEEECCBTTBCCBT-TE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccC--CEEEEee-EEEEeCEEEEeCCCCCCCCCCCCccC-cE
Confidence 1110 0 1123334 89999998887764 5677754 78999999999999998776 44111 23
Q ss_pred eccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhh
Q psy1545 120 RDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIF 197 (454)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~ 197 (454)
.+..++..+.+ .+++++|||+|++|+|+|..|+ |.+|+++++++++++ .+++++.+.+.+.+.+
T Consensus 159 ~~~~~~~~~~~---~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~---------- 224 (458)
T 1lvl_A 159 ISSTEALAPKA---LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP-TYDSELTAPVAESLKK---------- 224 (458)
T ss_dssp ECHHHHTCCSS---CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHHH----------
T ss_pred ecHHHHhhhhc---cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHH----------
Confidence 45555444322 4899999999999999999987 999999999999987 4788887777777755
Q ss_pred hhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEEEeeccCc
Q psy1545 198 KRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVP 275 (454)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi~a~G~~p 275 (454)
.||++++++.+++++. + . +.+..++| +++++|.|++|+|++|
T Consensus 225 -------------------------------~gv~i~~~~~v~~i~~-~--~--v~v~~~~G~~~~i~~D~vv~a~G~~p 268 (458)
T 1lvl_A 225 -------------------------------LGIALHLGHSVEGYEN-G--C--LLANDGKGGQLRLEADRVLVAVGRRP 268 (458)
T ss_dssp -------------------------------HTCEEETTCEEEEEET-T--E--EEEECSSSCCCEECCSCEEECCCEEE
T ss_pred -------------------------------CCCEEEECCEEEEEEe-C--C--EEEEECCCceEEEECCEEEECcCCCc
Confidence 8999999999999987 4 2 44554456 6899999999999999
Q ss_pred Ccccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcc
Q psy1545 276 NSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPV 353 (454)
Q Consensus 276 ~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~ 353 (454)
+.+ + ++..|+.++++ +|.||+++||+.|+|||+|||+..+ ++++.|..||+.||.||++... ...
T Consensus 269 ~~~-~l~~~~~g~~~~~~-~i~vd~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~-~~~ 335 (458)
T 1lvl_A 269 RTK-GFNLECLDLKMNGA-AIAIDERCQTSMHNVWAIGDVAGEP----------MLAHRAMAQGEMVAEIIAGKAR-RFE 335 (458)
T ss_dssp CCS-SSSGGGSCCCEETT-EECCCTTCBCSSTTEEECGGGGCSS----------CCHHHHHHHHHHHHHHHTTCCC-CCC
T ss_pred CCC-CCCcHhcCCcccCC-EEeECCCCcCCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHhcCCCc-cCC
Confidence 997 5 46678888777 9999999999999999999999743 5788999999999999997321 111
Q ss_pred eeccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEE--e----------ecCCccEEEEEE--ECCeEEEEEEEcCC
Q psy1545 354 IQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILL--R----------VTRGEEYIKLVM--KDGRMQGAVLIGET 419 (454)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~--~----------~~~~~~~~k~~~--~~~~i~G~~~~g~~ 419 (454)
+...|+ ..+++.+++.+|+++.++...+++... . .....+|+|+++ ++++|+|++++|+.
T Consensus 336 ~~~~p~------~~~~~p~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl~~d~~~~~ilG~~~vg~~ 409 (458)
T 1lvl_A 336 PAAIAA------VCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVA 409 (458)
T ss_dssp CSCCCE------EECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETT
T ss_pred CCCCCE------EEECCCCeEEEeCCHHHHHHcCCCEEEEEEECccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCC
Confidence 112233 234566999999998765433322221 1 123468999999 47999999999998
Q ss_pred --chHHHHHHHHhcCCCcchhhhhc-cCCCC
Q psy1545 420 --EIEEMCENLILNQLDLTDIADDL-LNPNI 447 (454)
Q Consensus 420 --~~~~~~~~~i~~~~~~~~~~~~~-~~~~~ 447 (454)
+.++.+..+|++++|++++.+.+ .||++
T Consensus 410 a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~ 440 (458)
T 1lvl_A 410 VSELSTAFAQSLEMGACLEDVAGTIHAHPTL 440 (458)
T ss_dssp GGGHHHHHHHHHHHTCBHHHHHTSCCCTTCT
T ss_pred HHHHHHHHHHHHHCCCCHHHHhhCcCCCCCH
Confidence 46899999999999999997653 34444
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-48 Score=389.84 Aligned_cols=380 Identities=18% Similarity=0.224 Sum_probs=280.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc-ccccccccc------------------cc----cccchh
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA-VTKTVPVTK------------------LL----SDITVE 58 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~-~~~~~~~~~------------------~~----~~~~~~ 58 (454)
++||+|||||+||++||..|++. +.+|+|||+++.+++ +.++...+. .+ ...++.
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ 78 (455)
T 2yqu_A 1 MYDLLVIGAGPGGYVAAIRAAQL--GMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLP 78 (455)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHH
T ss_pred CCCEEEECCChhHHHHHHHHHHC--CCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHH
Confidence 47999999999999999999998 899999999965433 222111000 00 001111
Q ss_pred h--------------hHHHHHhc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCCC-ceeeeecc
Q psy1545 59 E--------------TDANKFEG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSP-HVITIRDT 122 (454)
Q Consensus 59 ~--------------~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~~-~~~~~~~~ 122 (454)
. .....+.+ +++++.+++..+++....|.+ +|.++.||+||+|||++|+.|++++ ....+.+.
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~-~g~~~~~d~lviAtG~~p~~~~~~g~~~~~v~~~ 157 (455)
T 2yqu_A 79 ALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEE-TGEELEARYILIATGSAPLIPPWAQVDYERVVTS 157 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETT-TCCEEEEEEEEECCCEEECCCTTBCCCSSSEECH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEee-CCEEEEecEEEECCCCCCCCCCCCCCCcCcEech
Confidence 0 01123334 899998888777765444544 5778999999999999998887661 11123444
Q ss_pred chHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhc
Q psy1545 123 DSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRM 200 (454)
Q Consensus 123 ~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~ 200 (454)
+++..+. ..+++++|||+|++|+|+|..|. |.+|+++++.+++++. +++++.+.+.+.+.+
T Consensus 158 ~~~~~~~---~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~------------- 220 (455)
T 2yqu_A 158 TEALSFP---EVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT-MDLEVSRAAERVFKK------------- 220 (455)
T ss_dssp HHHTCCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHH-------------
T ss_pred HHhhccc---cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc-cCHHHHHHHHHHHHH-------------
Confidence 4443332 23799999999999999999986 9999999999998874 677777777777654
Q ss_pred ccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccc
Q psy1545 201 RYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQ 280 (454)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~ 280 (454)
.||+++++++|++++.+++ .+.+.+++|+++++|.||+|+|++|+.+ +
T Consensus 221 ----------------------------~Gv~i~~~~~V~~i~~~~~---~v~v~~~~g~~i~~D~vv~A~G~~p~~~-~ 268 (455)
T 2yqu_A 221 ----------------------------QGLTIRTGVRVTAVVPEAK---GARVELEGGEVLEADRVLVAVGRRPYTE-G 268 (455)
T ss_dssp ----------------------------HTCEEECSCCEEEEEEETT---EEEEEETTSCEEEESEEEECSCEEECCT-T
T ss_pred ----------------------------CCCEEEECCEEEEEEEeCC---EEEEEECCCeEEEcCEEEECcCCCcCCC-C
Confidence 8999999999999987553 4667777888999999999999999987 5
Q ss_pred --cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccc
Q psy1545 281 --VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFS 358 (454)
Q Consensus 281 --~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~ 358 (454)
++..++.++++|+|.||+++||+.|+|||+|||+..+ ++++.|..||+.+|+||++... ...+...|
T Consensus 269 l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p 337 (455)
T 2yqu_A 269 LSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGP----------MLAHKASEEGIAAVEHMVRGFG-HVDYQAIP 337 (455)
T ss_dssp CCGGGGTCCCCTTSCCCCCTTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHSCC-CCCGGGCC
T ss_pred CChhhcCCccCCCCcEeECCCcccCCCCEEEEecCCCCc----------cCHHHHHHhHHHHHHHHcCCCc-cCCCCCCC
Confidence 5666788877899999999999999999999998743 5788999999999999997421 11111223
Q ss_pred eeeeeeeeeecCeEEEEeecccCCcCCCCceEEE--e----------ecCCccEEEEEEE--CCeEEEEEEEcCC--chH
Q psy1545 359 FEMFTHMTKFFGYKVILLGLFNGQTLENDYEILL--R----------VTRGEEYIKLVMK--DGRMQGAVLIGET--EIE 422 (454)
Q Consensus 359 ~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~--~----------~~~~~~~~k~~~~--~~~i~G~~~~g~~--~~~ 422 (454)
+. .+++.+++.+|+++.++...+++... . .....+|+|++++ +++|+|++++|+. +.+
T Consensus 338 ~~------~~~~~~~a~~G~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i 411 (455)
T 2yqu_A 338 SV------VYTHPEIAAVGYTEEELKAQGIPYKVGKFPYSASGRARAMGETEGFIKVLAHAKTDRILGVHGIGARVGDVL 411 (455)
T ss_dssp EE------ECSSSEEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHH
T ss_pred EE------EEcCCceEEEECCHHHHHHcCCCEEEEEEEcccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHH
Confidence 33 34556999999988765433322221 1 1234689999994 8999999999998 457
Q ss_pred HHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 423 EMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 423 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
+.+..+|+++++++++.+. .++++++.+
T Consensus 412 ~~~~~ai~~~~~~~~~~~~-~~~~Pt~~e 439 (455)
T 2yqu_A 412 AEAALALFFKASAEDLGRA-PHAHPSLSE 439 (455)
T ss_dssp HHHHHHHHTTCBHHHHHHS-CCCSSCTHH
T ss_pred HHHHHHHHCCCCHHHHhhc-ccCCCCHHH
Confidence 8999999999999999664 545555443
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=363.43 Aligned_cols=353 Identities=18% Similarity=0.277 Sum_probs=268.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccc----cchhhhHHHHH-hc-CcEEEcc-
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSD----ITVEETDANKF-EG-LCTVIVD- 74 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~-~i~~~~~- 74 (454)
++||+|||||+||++||..|++.++..+|+++|+++... +..+.++..+.. .++.......+ .+ +++++.+
T Consensus 4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 81 (384)
T 2v3a_A 4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRS--YSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHT 81 (384)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCE--ECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSC
T ss_pred CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCc--cCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCC
Confidence 489999999999999999999985557899999986321 222222221111 11111222333 34 8999854
Q ss_pred eEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHH
Q psy1545 75 TVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATEL 150 (454)
Q Consensus 75 ~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~ 150 (454)
++..+++..+.|.+. +..+.||+||+|||++|+.|+++ +++++..+..++..+...+..+++++|||+|++|+|+
T Consensus 82 ~v~~i~~~~~~v~~~-~~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~ 160 (384)
T 2v3a_A 82 RVTGIDPGHQRIWIG-EEEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEF 160 (384)
T ss_dssp CCCEEEGGGTEEEET-TEEEECSEEEECCCEEECCCCCBSTTTTCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHH
T ss_pred EEEEEECCCCEEEEC-CcEEECCEEEEeCCCCcCCCCCCCcCcCCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHH
Confidence 799999888888885 45799999999999999988876 3466666777777777777779999999999999999
Q ss_pred HHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccC
Q psy1545 151 VHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRD 228 (454)
Q Consensus 151 a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 228 (454)
|..+. |.+|+++++.+++++..+++++.+.+.+.+.+
T Consensus 161 A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~----------------------------------------- 199 (384)
T 2v3a_A 161 ANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEG----------------------------------------- 199 (384)
T ss_dssp HHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHT-----------------------------------------
T ss_pred HHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHH-----------------------------------------
Confidence 99986 99999999999988876677777777777754
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCcee
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVY 308 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iy 308 (454)
.||++++++.|++++.+++ .+.+.+++|+++++|.|++|+|++|+.+ +++..+++++ +| |.||+++||+.|+||
T Consensus 200 ~gv~i~~~~~v~~i~~~~~---~~~v~~~~g~~i~~d~vv~a~G~~p~~~-l~~~~g~~~~-~g-i~vd~~~~t~~~~Iy 273 (384)
T 2v3a_A 200 LGVRFHLGPVLASLKKAGE---GLEAHLSDGEVIPCDLVVSAVGLRPRTE-LAFAAGLAVN-RG-IVVDRSLRTSHANIY 273 (384)
T ss_dssp TTCEEEESCCEEEEEEETT---EEEEEETTSCEEEESEEEECSCEEECCH-HHHHTTCCBS-SS-EEECTTCBCSSTTEE
T ss_pred cCCEEEeCCEEEEEEecCC---EEEEEECCCCEEECCEEEECcCCCcCHH-HHHHCCCCCC-CC-EEECCCCCCCCCCEE
Confidence 8999999999999987542 4678888999999999999999999998 8888888876 56 999999999999999
Q ss_pred ecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCc
Q psy1545 309 AAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDY 388 (454)
Q Consensus 309 a~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~ 388 (454)
|+|||+..... ..++++.|..||+++|+||++... ...+..+|+.+|+ .++++..+|.+.... .
T Consensus 274 A~GD~~~~~~~------~~~~~~~a~~~g~~~a~~i~g~~~-~~~~~~~p~~~~~-----~~~~~~~~g~~~~~~-~--- 337 (384)
T 2v3a_A 274 ALGDCAEVDGL------NLLYVMPLMACARALAQTLAGNPS-QVAYGPMPVTVKT-----PACPLVVSPPPRGMD-G--- 337 (384)
T ss_dssp ECGGGEEETTB------CCCSHHHHHHHHHHHHHHHTTCCC-CCCCCCCCEEECC-----TTSCEEEECCCTTCC-C---
T ss_pred EeeeeeeECCC------CcchHHHHHHHHHHHHHHhcCCCc-cCCCCCcceEEEE-----CCeeEEEecCCCCCC-c---
Confidence 99999964211 134678899999999999997431 1112234444443 356788899765321 1
Q ss_pred eEEEeecCCccEEEEEE-ECCeEEEEEEEcCCch
Q psy1545 389 EILLRVTRGEEYIKLVM-KDGRMQGAVLIGETEI 421 (454)
Q Consensus 389 ~~~~~~~~~~~~~k~~~-~~~~i~G~~~~g~~~~ 421 (454)
...... ...+|.|+++ ++++|+|+|++|+...
T Consensus 338 ~~~~~~-~~~g~~~~~~~~~~~i~G~~~~g~~a~ 370 (384)
T 2v3a_A 338 QWLVEG-SGTDLKVLCRDTAGRVIGYALTGAAVN 370 (384)
T ss_dssp EEEEEE-ETTEEEEEEECTTSCEEEEEEEGGGGG
T ss_pred eEEEEe-cCCcEEEEEEccCCEEEEEEEECcchH
Confidence 111112 2457999988 4899999999999843
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-46 Score=387.99 Aligned_cols=385 Identities=19% Similarity=0.235 Sum_probs=272.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC-C--------ccccccccccccc---------------------c
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS-G--------IVKAVTKTVPVTK---------------------L 51 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~-~--------~~~~~~~~~~~~~---------------------~ 51 (454)
++||+|||||+||++||..|++. |.+|+|||+. + ..+.|.++...+. .
T Consensus 107 ~~dvvVIG~GpAGl~aA~~l~~~--g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~~ 184 (598)
T 2x8g_A 107 DYDLIVIGGGSGGLAAGKEAAKY--GAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWS 184 (598)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHT--TCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cccEEEECCCccHHHHHHHHHhC--CCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCcc
Confidence 47999999999999999999998 8999999973 2 1121111111000 0
Q ss_pred cc----ccchh------hhH--------HHHHhc-CcEEEcceEEEEeCcccEEEeccC--cEEEecEEEEecCCCCCCC
Q psy1545 52 LS----DITVE------ETD--------ANKFEG-LCTVIVDTVAAIDPRVNCVITEKQ--NRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 52 ~~----~~~~~------~~~--------~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lviAtG~~p~~~ 110 (454)
.. ..++. ... ...+.. +++++.+.+.++++....+...+| .++.||+||||||++|+.|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~p~~p 264 (598)
T 2x8g_A 185 LDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYP 264 (598)
T ss_dssp CCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEEECCCEEECCC
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCCCCCC
Confidence 00 01110 001 111333 899999999999887766666566 4799999999999999998
Q ss_pred CCCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhcc
Q psy1545 111 WYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKT 188 (454)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~ 188 (454)
+++.......+.+++..+. ..+++++|||||++|+|+|..|+ |.+||+++|. .+++. +++++.+.+.+.+.+
T Consensus 265 ~i~G~~~~~~~~~~~~~~~---~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~-~d~~~~~~~~~~l~~- 338 (598)
T 2x8g_A 265 EIPGAVEYGITSDDLFSLP---YFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRG-FDQQMAEKVGDYMEN- 338 (598)
T ss_dssp SSTTHHHHCEEHHHHTTCS---SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-SCHHHHHHHHHHHHH-
T ss_pred CCCCcccceEcHHHHhhCc---cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCc-CCHHHHHHHHHHHHh-
Confidence 8872111112333333221 24789999999999999999986 9999999988 55553 677777777776654
Q ss_pred CCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcC------CCCccceEE--EecCCc
Q psy1545 189 NTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDS------EDDTCNAYV--KLTNGH 260 (454)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~------~~~~~~~~v--~~~~g~ 260 (454)
.||++++++.+.++... ++....+.+ .+.+|+
T Consensus 339 ----------------------------------------~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~ 378 (598)
T 2x8g_A 339 ----------------------------------------HGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGK 378 (598)
T ss_dssp ----------------------------------------TTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSC
T ss_pred ----------------------------------------CCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCc
Confidence 89999999988887532 100112333 346776
Q ss_pred EEe--cCEEEEeeccCcCcccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHH
Q psy1545 261 THA--CDIVVSAIGVVPNSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHM 336 (454)
Q Consensus 261 ~~~--~D~vi~a~G~~p~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~ 336 (454)
+++ +|.|++|+|++|+.+ + ++..|++++++|+|.||+++||+.|+|||+|||+... +.+++.|..|
T Consensus 379 ~~~~~~D~vi~a~G~~p~~~-~l~~~~~gl~~~~~G~i~vd~~~~ts~~~VyA~GD~~~~~---------~~~~~~A~~~ 448 (598)
T 2x8g_A 379 KFEEEFETVIFAVGREPQLS-KVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAGK---------PQLTPVAIQA 448 (598)
T ss_dssp EEEEEESEEEECSCEEECGG-GTBCGGGCCCBCTTSCBCCCTTSBCSSTTEEECGGGBTTS---------CCCHHHHHHH
T ss_pred EEeccCCEEEEEeCCccccC-ccCchhcCceECCCCcEEeCCCCcCCCCCEEEEeeecCCC---------CccHHHHHHh
Confidence 555 999999999999998 6 4566788888899999999999999999999996532 3578899999
Q ss_pred HHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC----CceEEEe-e----------cCCccEE
Q psy1545 337 GTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN----DYEILLR-V----------TRGEEYI 401 (454)
Q Consensus 337 g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~----~~~~~~~-~----------~~~~~~~ 401 (454)
|+.||.||++.......+...|..+| ++++++.+|+++.++... .+++... . ....+|+
T Consensus 449 g~~aa~~i~~~~~~~~~~~~~p~~~~------~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (598)
T 2x8g_A 449 GRYLARRLFAGATELTDYSNVATTVF------TPLEYGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYM 522 (598)
T ss_dssp HHHHHHHHHHCCCCCCCCTTCCEEEC------SSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCTHHHHTTCCSSCEEE
T ss_pred HHHHHHHHhcCCCcccCCCCCcEEEE------CCCceEEEeCCHHHHHhhCCCCcEEEEEEeccchhHHhhcCCCCcEEE
Confidence 99999999975322222223344444 455899999998765321 2332210 0 1246899
Q ss_pred EEEEE---CCeEEEEEEEcCC--chHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 402 KLVMK---DGRMQGAVLIGET--EIEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 402 k~~~~---~~~i~G~~~~g~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
|++++ +++|+|+|++|+. +.++.++.+|++++|++++.+. .++++++.+
T Consensus 523 kli~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~-~~~hPt~~e 576 (598)
T 2x8g_A 523 KLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFDRT-IGIHPTCSE 576 (598)
T ss_dssp EEEEETTTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHS-CCCSSCSGG
T ss_pred EEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhc-cccCCCHHH
Confidence 99994 7999999999996 3678999999999999999764 555555554
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-45 Score=369.34 Aligned_cols=383 Identities=20% Similarity=0.271 Sum_probs=279.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccccc--------------------------cc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLS--------------------------DI 55 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~--------------------------~~ 55 (454)
++||||||||+||++||..|++.+++.+|+|||+++.+++ +++.+++.+. ..
T Consensus 11 ~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y--~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (493)
T 1m6i_A 11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPY--MRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPP 88 (493)
T ss_dssp EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCB--CSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCG
T ss_pred cCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC--CCCCCCHHhhcCCccchhhcccccccccccccccccch
Confidence 4799999999999999999998878899999999986542 2222111110 00
Q ss_pred chhh--hHHHHHhc-CcEEEcc-eEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC--------Cceeeeeccc
Q psy1545 56 TVEE--TDANKFEG-LCTVIVD-TVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS--------PHVITIRDTD 123 (454)
Q Consensus 56 ~~~~--~~~~~~~~-~i~~~~~-~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~--------~~~~~~~~~~ 123 (454)
.... .....+.+ +++++.+ +|+.+++..++|.+.+|+++.||+||||||++|+.|+++ +.++.+++.+
T Consensus 89 ~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~~~~~~~~~~~~~v~~~~~~~ 168 (493)
T 1m6i_A 89 SFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIG 168 (493)
T ss_dssp GGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCHHHHTSCHHHHHTEEECCSHH
T ss_pred HhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCCcccccccccCceEEEcCHH
Confidence 0000 00001123 7898876 999999988999998898999999999999999877653 2455667788
Q ss_pred hHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc------CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhh
Q psy1545 124 SVAVLQEKLKSAKKIVVIGNGGIATELVHELS------NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIF 197 (454)
Q Consensus 124 ~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~------g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~ 197 (454)
++..+.+.+..+++++|||+|++|+|+|..|. |.+|+++++.+.++.+.+++++.+.+.+.+.+
T Consensus 169 d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~---------- 238 (493)
T 1m6i_A 169 DFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRR---------- 238 (493)
T ss_dssp HHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHh----------
Confidence 88888877777999999999999999999874 68899999888777666676666666666644
Q ss_pred hhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 198 KRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
.||++++++.|++++.+++ .+.+.+++|+++++|.||+|+|++|+.
T Consensus 239 -------------------------------~GV~v~~~~~V~~i~~~~~---~~~v~l~dG~~i~aD~Vv~a~G~~pn~ 284 (493)
T 1m6i_A 239 -------------------------------EGVKVMPNAIVQSVGVSSG---KLLIKLKDGRKVETDHIVAAVGLEPNV 284 (493)
T ss_dssp -------------------------------TTCEEECSCCEEEEEEETT---EEEEEETTSCEEEESEEEECCCEEECC
T ss_pred -------------------------------cCCEEEeCCEEEEEEecCC---eEEEEECCCCEEECCEEEECCCCCccH
Confidence 8999999999999986542 457888999999999999999999999
Q ss_pred ccccCCCCceecC-CCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceec
Q psy1545 278 NIQVHGTPFELAP-DCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQD 356 (454)
Q Consensus 278 ~~~~~~~~l~~~~-~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~ 356 (454)
+ +++..++++++ +|+|.||++||| .|+|||+|||+..+....+.. ...+|..|..||+.||+||++... .+..
T Consensus 285 ~-l~~~~gl~~~~~~ggi~Vd~~l~t-~~~IyA~GD~a~~~~~~~g~~-~~~~~~~A~~qg~~aa~ni~g~~~---~~~~ 358 (493)
T 1m6i_A 285 E-LAKTGGLEIDSDFGGFRVNAELQA-RSNIWVAGDAACFYDIKLGRR-RVEHHDHAVVSGRLAGENMTGAAK---PYWH 358 (493)
T ss_dssp T-THHHHTCCBCTTTCSEECCTTCEE-ETTEEECGGGEEEEETTTEEE-CCCCHHHHHHHHHHHHHHHTSCCC---CCCC
T ss_pred H-HHHHcCCccccCCCcEEECCCccc-CCCeeEeeeeEeccCcccCcc-ccchHHHHHHHHHHHHHHhcCCCC---CcCC
Confidence 8 88777888875 589999999998 699999999998643322221 345788999999999999997532 1111
Q ss_pred cceeeeeeeeeec-----------CeEEEEeecccCCcCC------------------------CCceEEEe--------
Q psy1545 357 FSFEMFTHMTKFF-----------GYKVILLGLFNGQTLE------------------------NDYEILLR-------- 393 (454)
Q Consensus 357 ~~~~~~~~~~~~~-----------~~~~~~vG~~~~~~~~------------------------~~~~~~~~-------- 393 (454)
.|+ .|+.++ +..+.++|........ ..+++...
T Consensus 359 ~~~----~~s~~~~~~~~~~~g~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (493)
T 1m6i_A 359 QSM----FWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASEITIPPSTPAVPQAP 434 (493)
T ss_dssp CCE----EEEESSTTCEEEEEECCCTTSCEEEEEECCCTTCSHHHHHHHHSCSCHHHHSCSCCCC---------------
T ss_pred cCc----eeeeeccCcceEEEeccCCCcceEEeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 222 223232 3333344442211000 00011000
Q ss_pred --ecCCccEEEEEEECCeEEEEEEEcCCchHHHHHHHHhcCCCcchhhh
Q psy1545 394 --VTRGEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIAD 440 (454)
Q Consensus 394 --~~~~~~~~k~~~~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~~~ 440 (454)
......|+.+++++|+|+|+.++|.......++.+|+++.+++++.+
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~~~~~~~~ 483 (493)
T 1m6i_A 435 VQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMPIARKIIKDGEQHEDLNE 483 (493)
T ss_dssp -----CCEEEEEEEETTEEEEEEEESCCSCHHHHHHHHHHCCBCSCSTT
T ss_pred cccccCCcEEEEEEeCCEEEEEEEecCcchHHHHHHHHhCCCCCCCHHH
Confidence 00123457788899999999999999999999999999999988754
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=337.06 Aligned_cols=290 Identities=19% Similarity=0.222 Sum_probs=226.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccc-cccccchhhhHHHHHh--c-CcEEEcceEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTK-LLSDITVEETDANKFE--G-LCTVIVDTVAA 78 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~-~i~~~~~~v~~ 78 (454)
.+|||||||+||+++|..|++. +.+|+|||+++++.+.+..+.... .+...++......... . +++++.++|+.
T Consensus 43 prVVIIGgG~AGl~~A~~L~~~--~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~~v~~ 120 (502)
T 4g6h_A 43 PNVLILGSGWGAISFLKHIDTK--KYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEAEATS 120 (502)
T ss_dssp CEEEEECSSHHHHHHHHHSCTT--TCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEEEEEE
T ss_pred CCEEEECCcHHHHHHHHHhhhC--CCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEEEEEE
Confidence 5799999999999999999987 889999999988654333322211 1221222111222222 2 89999999999
Q ss_pred EeCcccEEEec--------------------cCcEEEecEEEEecCCCCCCCCCC---CceeeeeccchHHHHHHHhh--
Q psy1545 79 IDPRVNCVITE--------------------KQNRIKYKTLCICTGASPRKIWYS---PHVITIRDTDSVAVLQEKLK-- 133 (454)
Q Consensus 79 i~~~~~~v~~~--------------------~g~~i~~d~lviAtG~~p~~~~~~---~~~~~~~~~~~~~~l~~~~~-- 133 (454)
||++.++|+++ ++.++.||+||||||++|+.+++| ++.+.+.+.+++.++++.+.
T Consensus 121 ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ipG~~e~a~~l~t~~dA~~ir~~l~~~ 200 (502)
T 4g6h_A 121 INPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAAN 200 (502)
T ss_dssp EEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTCTTHHHHCEECSSHHHHHHHHHHHHHH
T ss_pred EEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCccCcccccCCCCCHHHHHHHHHHHHHH
Confidence 99999988763 356899999999999999999888 56778888888887765431
Q ss_pred ---------------cCCeEEEEcCchhHHHHHHHhc----------------CCcEEEEEeCCCccccccCCcchhhhH
Q psy1545 134 ---------------SAKKIVVIGNGGIATELVHELS----------------NVDIVWVVKDKHISATFLDPGAAEFFQ 182 (454)
Q Consensus 134 ---------------~~~~vvVvG~G~~g~e~a~~l~----------------g~~V~~i~~~~~~~~~~~d~~~~~~~~ 182 (454)
...+++|||||++|+|+|.++. ..+|+++++.+++++. +++++.+.+.
T Consensus 201 ~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~-~~~~~~~~~~ 279 (502)
T 4g6h_A 201 LEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNM-FEKKLSSYAQ 279 (502)
T ss_dssp HHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTT-SCHHHHHHHH
T ss_pred HHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccC-CCHHHHHHHH
Confidence 1247999999999999998774 2689999999999985 7888888888
Q ss_pred HHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC---
Q psy1545 183 DSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--- 259 (454)
Q Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--- 259 (454)
+.|++ +||++++++.|++++.++ ........+|
T Consensus 280 ~~L~~-----------------------------------------~GV~v~~~~~v~~v~~~~---~~~~~~~~dg~~~ 315 (502)
T 4g6h_A 280 SHLEN-----------------------------------------TSIKVHLRTAVAKVEEKQ---LLAKTKHEDGKIT 315 (502)
T ss_dssp HHHHH-----------------------------------------TTCEEETTEEEEEECSSE---EEEEEECTTSCEE
T ss_pred HHHHh-----------------------------------------cceeeecCceEEEEeCCc---eEEEEEecCcccc
Confidence 88866 899999999999998754 2334455666
Q ss_pred -cEEecCEEEEeeccCcCcc--cccCCCCceecCCCceEecccccc-ccCceeecCcccccCCccccchhhccChHHHHH
Q psy1545 260 -HTHACDIVVSAIGVVPNSN--IQVHGTPFELAPDCGIGVNELMQT-SISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKH 335 (454)
Q Consensus 260 -~~~~~D~vi~a~G~~p~~~--~~~~~~~l~~~~~g~i~vd~~~~t-~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~ 335 (454)
+++++|.||||+|.+|+.. .+....+...+.+|+|.||++||+ ++|||||+|||+..+ .+++++.|.+
T Consensus 316 ~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~--------~p~~a~~A~q 387 (502)
T 4g6h_A 316 EETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAG--------LPPTAQVAHQ 387 (502)
T ss_dssp EEEEECSEEEECCCEECCHHHHHHHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESS--------SCCCHHHHHH
T ss_pred eeeeccCEEEEccCCcCCHHHHhHHHhccccccCCCceeECCccccCCCCCEEEEEcccCCC--------CCCchHHHHH
Confidence 4699999999999999842 133334555677899999999997 899999999999865 3568899999
Q ss_pred HHHHHHhhhcCC
Q psy1545 336 MGTYAAKCMVGA 347 (454)
Q Consensus 336 ~g~~aa~~i~~~ 347 (454)
||+++|+||.+.
T Consensus 388 qg~~~A~ni~~~ 399 (502)
T 4g6h_A 388 EAEYLAKNFDKM 399 (502)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999754
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-39 Score=305.31 Aligned_cols=288 Identities=20% Similarity=0.196 Sum_probs=200.0
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc-----ccccchhhhHHHHHhc-CcEEEcc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL-----LSDITVEETDANKFEG-LCTVIVD 74 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~i~~~~~ 74 (454)
|+|||+||||||||++||.+|+++ |++|+|||++...+.+.+..+.... ....++.......+.+ ...+...
T Consensus 5 ~~yDvvIIG~GpAGl~aA~~l~~~--g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (312)
T 4gcm_A 5 IDFDIAIIGAGPAGMTAAVYASRA--NLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYG 82 (312)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccce
Confidence 368999999999999999999998 8999999998776666554332211 1112233333344444 5555433
Q ss_pred -eEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC-CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHH
Q psy1545 75 -TVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS-PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVH 152 (454)
Q Consensus 75 -~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~ 152 (454)
.+...+.....+...+++++.||+||||||++|+.|++| ...+................++|+++|||||++|+|+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~A~ 162 (312)
T 4gcm_A 83 DIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGT 162 (312)
T ss_dssp CCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHH
T ss_pred eeeeeeeeecceeeccCCeEEEeceeEEcccCccCcCCCCChhhhCCccEEeeeccCccccCCCEEEEECCCHHHHHHHH
Confidence 445555555555566788999999999999999999888 111111111111112222235899999999999999999
Q ss_pred Hhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCc
Q psy1545 153 ELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTK 230 (454)
Q Consensus 153 ~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~g 230 (454)
.|+ |.+||+++|++++++.. ....+.+ ++.+
T Consensus 163 ~l~~~g~~Vtlv~~~~~~~~~~------~~~~~~~-----------------------------------------~~~~ 195 (312)
T 4gcm_A 163 FLTKFADKVTIVHRRDELRAQR------ILQDRAF-----------------------------------------KNDK 195 (312)
T ss_dssp HHTTTCSEEEEECSSSSCCSCH------HHHHHHH-----------------------------------------HCTT
T ss_pred HHHhcCCEEEEEecccccCcch------hHHHHHH-----------------------------------------HhcC
Confidence 997 99999999998876531 1111222 2256
Q ss_pred eEEEeCceEEEEEcCCCCccceEEE-ec--CCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCce
Q psy1545 231 ITIEYSCEVERIVDSEDDTCNAYVK-LT--NGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNV 307 (454)
Q Consensus 231 v~i~~~~~v~~i~~~~~~~~~~~v~-~~--~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~I 307 (454)
+.......+......+......... .. ++..+++|.|++++|.+|+.. ++...++. +++|+|.||++||||+|||
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~-~~~~~g~~-~~~G~I~vd~~~~Ts~pgI 273 (312)
T 4gcm_A 196 IDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTA-PFKDLGIT-NDVGYIVTKDDMTTSVPGI 273 (312)
T ss_dssp EEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEESCG-GGGGGTCB-CTTSCBCCCTTSBCSSTTE
T ss_pred cceeeecceeeeeccccccccceeeeecCCceeEEeeeeEEeecCCCcCch-hHHhccee-cCCCeEeeCCCCccCCCCE
Confidence 7777666665555433101111111 12 236799999999999999998 77777765 5689999999999999999
Q ss_pred eecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 308 YAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 308 ya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
||+|||++.+ +++++.|..||+.||.||...+
T Consensus 274 yA~GDv~~~~---------~~~~~~A~~~G~~AA~~i~~~L 305 (312)
T 4gcm_A 274 FAAGDVRDKG---------LRQIVTATGDGSIAAQSAAEYI 305 (312)
T ss_dssp EECSTTBSCS---------CCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeecCCCc---------chHHHHHHHHHHHHHHHHHHHH
Confidence 9999998743 3678899999999999997543
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-38 Score=299.78 Aligned_cols=282 Identities=20% Similarity=0.182 Sum_probs=199.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccc-----------ccccccccccchhhhHHHHHhc-CcE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKT-----------VPVTKLLSDITVEETDANKFEG-LCT 70 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~-~i~ 70 (454)
|||+||||||||++||..|+++ |++|+|||++...+.+.+. +.++......++.......+.+ ++.
T Consensus 5 yDvvIIG~GpAGl~AA~~la~~--g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~ 82 (314)
T 4a5l_A 5 HDVVIIGSGPAAHTAAIYLGRS--SLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTT 82 (314)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT--TCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred CcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcE
Confidence 8999999999999999999998 8999999998765443321 1111111112233333334444 888
Q ss_pred EEcceEEEEeCccc--EEEeccCcEEEecEEEEecCCCCCCCCCCC----ceeeeeccchHHHHHHHhhcCCeEEEEcCc
Q psy1545 71 VIVDTVAAIDPRVN--CVITEKQNRIKYKTLCICTGASPRKIWYSP----HVITIRDTDSVAVLQEKLKSAKKIVVIGNG 144 (454)
Q Consensus 71 ~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lviAtG~~p~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G 144 (454)
+....+........ .+.+.++.++.||+||||||++|+.|++|. ............. .....++++++|||+|
T Consensus 83 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~ipG~~~~~~~~~~~~~~~~~-~~~~~~~~~vvViGgG 161 (314)
T 4a5l_A 83 IITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHVPGEDKYWQNGVSACAICDG-AVPIFRNKVLMVVGGG 161 (314)
T ss_dssp EECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHT-TSGGGTTSEEEEECSS
T ss_pred EEEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccCCCccccccccceeeehhhhh-hhhhcCCCeEEEECCC
Confidence 87777777665443 556667789999999999999999999881 1122222222221 1122358999999999
Q ss_pred hhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccccccc
Q psy1545 145 GIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNL 222 (454)
Q Consensus 145 ~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (454)
++|+|+|..|+ |++||+++|.+..... .....+..
T Consensus 162 ~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~------~~~~~~~~------------------------------------- 198 (314)
T 4a5l_A 162 DAAMEEALHLTKYGSKVIILHRRDAFRAS------KTMQERVL------------------------------------- 198 (314)
T ss_dssp HHHHHHHHHHTTTSSEEEEECSSSSCCSC------HHHHHHHH-------------------------------------
T ss_pred hHHHHHHHHHHHhCCeeeeeccccccccc------chhhhhhh-------------------------------------
Confidence 99999999997 9999999987654321 11111222
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEe---cCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL---TNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNEL 299 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~---~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~ 299 (454)
...+++.+....+.++...+.....+.+.. .+++++++|.|++|+|++||++ +++.. +.++++|.+ ||++
T Consensus 199 ----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~-~l~~~-~~~~~~G~i-v~~~ 271 (314)
T 4a5l_A 199 ----NHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSK-FLGGQ-VKTADDGYI-LTEG 271 (314)
T ss_dssp ----TCTTEEEECSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCG-GGTTS-SCBCTTSCB-CCBT
T ss_pred ----cccceeeEeeeeeEEEEeeeeccceeEEeecccccceeeccccceEecccccChh-Hhccc-ceEcCCeeE-eCCC
Confidence 226788888888888876542111223322 2347899999999999999998 77654 666777755 8999
Q ss_pred cccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 300 MQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 300 ~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
+|||+|||||+|||++.+ .+++..|+.||+.||.++..
T Consensus 272 ~~Ts~pgIyA~GDv~~~~---------~~~~~~A~~~G~~AA~~~~~ 309 (314)
T 4a5l_A 272 PKTSVDGVFACGDVCDRV---------YRQAIVAAGSGCMAALSCEK 309 (314)
T ss_dssp TBCSSTTEEECSTTTCSS---------CCCHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCEEEEEeccCCc---------chHHHHHHHHHHHHHHHHHH
Confidence 999999999999999864 35677899999999998864
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=314.70 Aligned_cols=304 Identities=18% Similarity=0.161 Sum_probs=218.2
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc-ccccchhhhHHHHHhc-CcEEEcceEEE
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL-LSDITVEETDANKFEG-LCTVIVDTVAA 78 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~i~~~~~~v~~ 78 (454)
|..+|||||||+||++||..|++++++.+|+|||+++++.+...++.+... ....++.....+.+.+ +++++.++|+.
T Consensus 1 M~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~~v~~ 80 (430)
T 3hyw_A 1 MAKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAES 80 (430)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEE
T ss_pred CCCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEeEEEE
Confidence 877899999999999999999998778999999999987654433332211 1111222222233444 99999999999
Q ss_pred EeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC---CceeeeeccchHHHHHHHhh---cCCeEEEEcCch------h
Q psy1545 79 IDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS---PHVITIRDTDSVAVLQEKLK---SAKKIVVIGNGG------I 146 (454)
Q Consensus 79 i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~---~~~~~~~~~~~~~~l~~~~~---~~~~vvVvG~G~------~ 146 (454)
+|+++++|++++|+++.||+||||||+++. ++++ ++.+.+++.+++.++++.+. ..+.++|+|++. .
T Consensus 81 Id~~~~~V~~~~g~~i~YD~LViAtG~~~~-~~i~G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~ 159 (430)
T 3hyw_A 81 IDPDANTVTTQSGKKIEYDYLVIATGPKLV-FGAEGQEENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGP 159 (430)
T ss_dssp EETTTTEEEETTCCEEECSEEEECCCCEEE-CCSBTHHHHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHH
T ss_pred EECCCCEEEECCCCEEECCEEEEeCCCCcc-CCccCcccCcCCcccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHH
Confidence 999999999999999999999999999864 3455 56777888888888777653 345566666553 2
Q ss_pred HHHHHHHh----c------CCcEEEEEeCCCccc--cccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCC
Q psy1545 147 ATELVHEL----S------NVDIVWVVKDKHISA--TFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGP 214 (454)
Q Consensus 147 g~e~a~~l----~------g~~V~~i~~~~~~~~--~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 214 (454)
+.|++..+ . ..+|++++..+.+.. ....+...+.+.+.+.+
T Consensus 160 ~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~--------------------------- 212 (430)
T 3hyw_A 160 AYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAE--------------------------- 212 (430)
T ss_dssp HHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHh---------------------------
Confidence 34554433 1 357888887665432 11233344445555543
Q ss_pred ccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEEEeeccCcCcccccCCCC--ceecC
Q psy1545 215 DWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPNSNIQVHGTP--FELAP 290 (454)
Q Consensus 215 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~--l~~~~ 290 (454)
+||++++++.|++++.+. +.+...+| +++++|.+++++|.+|+. ++...+ +..+.
T Consensus 213 --------------~GV~~~~~~~v~~v~~~~-----~~~~~~~g~~~~i~~d~vi~~~G~~~~~--~~~~~~~~l~~~~ 271 (430)
T 3hyw_A 213 --------------RNIDWIANVAVKAIEPDK-----VIYEDLNGNTHEVPAKFTMFMPSFQGPE--VVASAGDKVANPA 271 (430)
T ss_dssp --------------TTCEEECSCEEEEECSSE-----EEEECTTSCEEEEECSEEEEECEEECCH--HHHTTCTTTBCTT
T ss_pred --------------CCeEEEeCceEEEEeCCc-----eEEEeeCCCceEeecceEEEeccCCCch--HHHhcccccccCC
Confidence 899999999999997653 34444444 579999999999999985 555544 44455
Q ss_pred CCceEeccccc-cccCceeecCcccccCCcc-ccc-hhhccChHHHHHHHHHHHhhhcCCCCCCcc
Q psy1545 291 DCGIGVNELMQ-TSISNVYAAGDVCTPSWDL-AKQ-WFQMRLWTQAKHMGTYAAKCMVGAVKNEPV 353 (454)
Q Consensus 291 ~g~i~vd~~~~-t~~~~Iya~GD~~~~~~~~-~~~-~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~ 353 (454)
+|+|.||++|| |++|||||+|||+..+... .+. ...+++++.|.+||+++|+||++.+.|++.
T Consensus 272 ~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~~l~g~~~ 337 (430)
T 3hyw_A 272 NKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIRNNPD 337 (430)
T ss_dssp TCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ceEEEecccccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 67899999999 9999999999999865221 111 113567899999999999999998887654
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-38 Score=300.10 Aligned_cols=284 Identities=23% Similarity=0.249 Sum_probs=209.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccc------ccccccccccchhhhHHHHHhc-CcEEEcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKT------VPVTKLLSDITVEETDANKFEG-LCTVIVD 74 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~ 74 (454)
++||+|||||++|+++|..|++. +.+|+|||++...+.+... +.++.......+.....+.+.+ +++++.+
T Consensus 8 ~~dvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~ 85 (325)
T 2q7v_A 8 DYDVVIIGGGPAGLTAAIYTGRA--QLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEMD 85 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHHc--CCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEee
Confidence 47999999999999999999998 8999999998543322211 1111111111222233333444 8998888
Q ss_pred eEEEEeCc--c---cEEEeccCcEEEecEEEEecCCCCCCCCCC-Cce---eeeeccchHHHHHHHhhcCCeEEEEcCch
Q psy1545 75 TVAAIDPR--V---NCVITEKQNRIKYKTLCICTGASPRKIWYS-PHV---ITIRDTDSVAVLQEKLKSAKKIVVIGNGG 145 (454)
Q Consensus 75 ~v~~i~~~--~---~~v~~~~g~~i~~d~lviAtG~~p~~~~~~-~~~---~~~~~~~~~~~l~~~~~~~~~vvVvG~G~ 145 (454)
++..++.. . ..|.+.+|+.+.||+||+|||++|+.|+++ ... ..++.... .......+++++|||+|.
T Consensus 86 ~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~i~g~~~~~~~~~~~~~~---~~~~~~~~~~v~VvG~G~ 162 (325)
T 2q7v_A 86 EVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCAT---CDGFFYKGKKVVVIGGGD 162 (325)
T ss_dssp CEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHH---HHGGGGTTCEEEEECCSH
T ss_pred eEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhccCceEEEecc---CCHHHcCCCEEEEECCCH
Confidence 99988865 3 366677788999999999999998888776 111 11112111 122233589999999999
Q ss_pred hHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccc
Q psy1545 146 IATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLH 223 (454)
Q Consensus 146 ~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (454)
+|+|+|..|. +.+|+++++++.+.. + ..+.+.+.
T Consensus 163 ~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~----~~~~~~l~------------------------------------- 198 (325)
T 2q7v_A 163 AAVEEGMFLTKFADEVTVIHRRDTLRA---N----KVAQARAF------------------------------------- 198 (325)
T ss_dssp HHHHHHHHHTTTCSEEEEECSSSSCCS---C----HHHHHHHH-------------------------------------
T ss_pred HHHHHHHHHHhcCCEEEEEeCCCcCCc---c----hHHHHHHH-------------------------------------
Confidence 9999999997 899999999876532 1 22222221
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEec---CCc--EEecCEEEEeeccCcCcccccCCCCceecCCCceEecc
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---NGH--THACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNE 298 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g~--~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~ 298 (454)
++.||+++++++++++..++ ....+.++ +|+ ++++|.|++|+|++|+.+ +++.. +.++++|+|.||+
T Consensus 199 ---~~~gv~i~~~~~v~~i~~~~---~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~-~l~~~-~~~~~~g~i~vd~ 270 (325)
T 2q7v_A 199 ---ANPKMKFIWDTAVEEIQGAD---SVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTA-FVKDT-VSLRDDGYVDVRD 270 (325)
T ss_dssp ---TCTTEEEECSEEEEEEEESS---SEEEEEEEETTTCCEEEEECSEEEECSCEEESCG-GGTTT-SCBCTTSCBCCBT
T ss_pred ---hcCCceEecCCceEEEccCC---cEEEEEEEECCCCcEEEEEcCEEEEccCCCCChH-HHhhh-cccCCCccEecCC
Confidence 23699999999999998753 23356664 564 799999999999999998 88776 7778889999999
Q ss_pred ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC
Q psy1545 299 LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351 (454)
Q Consensus 299 ~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 351 (454)
++||+.|+|||+|||+..+ +++++.|..||+.||.||.+.+.++
T Consensus 271 ~~~t~~~~vya~GD~~~~~---------~~~~~~A~~~g~~aa~~i~~~l~~~ 314 (325)
T 2q7v_A 271 EIYTNIPMLFAAGDVSDYI---------YRQLATSVGAGTRAAMMTERQLAAL 314 (325)
T ss_dssp TTBCSSTTEEECSTTTCSS---------CCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCccCCCCEEEeecccCcc---------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998753 3678899999999999999866543
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=299.75 Aligned_cols=283 Identities=14% Similarity=0.115 Sum_probs=202.3
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc-ccccccc--cccccchhhhHHHHHhc--CcEEEcce
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT-KTVPVTK--LLSDITVEETDANKFEG--LCTVIVDT 75 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~--~i~~~~~~ 75 (454)
-+|||+||||||||++||..|++. +++|+|||++...+... +++.+.. .....++.....+++.+ .+.++...
T Consensus 5 ~~yDVvIIGaGpAGlsAA~~lar~--g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (304)
T 4fk1_A 5 KYIDCAVIGAGPAGLNASLVLGRA--RKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKT 82 (304)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECC
T ss_pred CCcCEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeE
Confidence 058999999999999999999998 89999999987654322 2222211 11222333333444444 66777777
Q ss_pred EEEEeCc---ccEEEeccCcEEEecEEEEecCCCCCCCCCCC-ceeeeeccchHHHHHHHhhcCCeEEEEcCchh-HHHH
Q psy1545 76 VAAIDPR---VNCVITEKQNRIKYKTLCICTGASPRKIWYSP-HVITIRDTDSVAVLQEKLKSAKKIVVIGNGGI-ATEL 150 (454)
Q Consensus 76 v~~i~~~---~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~-g~e~ 150 (454)
+..+... ...+.+.+++++.||+||||||++|+.|+++. ..+................++++++|||||.. ++|+
T Consensus 83 ~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i~G~~~~~~~~v~~~~~~~~~~~~~~~~~VIggG~~~~~e~ 162 (304)
T 4fk1_A 83 VVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCPYCDGWELKDQPLIIISENEDHTLHM 162 (304)
T ss_dssp EEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSCTTHHHHBTTTEESCHHHHSGGGTTSCEEEECCSHHHHHHH
T ss_pred EEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccccccccCccccccceeeeccccchhHhcCCceeeecCCCchhhhH
Confidence 7666433 34677888899999999999999999999881 11111111111222222224678888888765 6788
Q ss_pred HHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccC
Q psy1545 151 VHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRD 228 (454)
Q Consensus 151 a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 228 (454)
|..+. +.+|+++.+++.+. ..+.+.+. +
T Consensus 163 a~~~~~~~~~v~i~~~~~~~~---------~~~~~~l~-----------------------------------------~ 192 (304)
T 4fk1_A 163 TKLVYNWSTDLVIATNGNELS---------QTIMDELS-----------------------------------------N 192 (304)
T ss_dssp HHHHTTTCSCEEEECSSCCCC---------HHHHHHHH-----------------------------------------T
T ss_pred HHHHHhCCceEEEEeccccch---------hhhhhhhh-----------------------------------------c
Confidence 88776 88999987765432 33444443 3
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCcee
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVY 308 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iy 308 (454)
.|+.++.+ .+..+..++ +....+++++|+++++|.+++++|.+|+.. ++...|++++++|+|.||+++|||+||||
T Consensus 193 ~g~~~~~~-~v~~~~~~~--~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~-~~~~~g~~~~~~G~I~vd~~~~Ts~p~Iy 268 (304)
T 4fk1_A 193 KNIPVITE-SIRTLQGEG--GYLKKVEFHSGLRIERAGGFIVPTFFRPNQ-FIEQLGCELQSNGTFVIDDFGRTSEKNIY 268 (304)
T ss_dssp TTCCEECS-CEEEEESGG--GCCCEEEETTSCEECCCEEEECCEEECSSC-HHHHTTCCCCTTSSSCSSTTCBCSSTTEE
T ss_pred cceeEeee-eEEEeecCC--CeeeeeeccccceeeecceeeeeccccCCh-hhhhcCeEECCCCCEEECcCCccCCCCEE
Confidence 78998887 477777654 335678899999999999888887777766 78888999999999999999999999999
Q ss_pred ecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 309 AAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 309 a~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
|+|||++.+ ++++..|+.||+.||.+|...+
T Consensus 269 A~GDv~~~~---------~~~~~~A~~~G~~AA~~i~~~L 299 (304)
T 4fk1_A 269 LAGETTTQG---------PSSLIIAASQGNKAAIAINSDI 299 (304)
T ss_dssp ECSHHHHTS---------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCCc---------chHHHHHHHHHHHHHHHHHHHH
Confidence 999999754 3567789999999999886543
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=298.77 Aligned_cols=283 Identities=19% Similarity=0.176 Sum_probs=209.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccc---ccc--cccccchhhhHHHHHhc-CcEEEcce
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVP---VTK--LLSDITVEETDANKFEG-LCTVIVDT 75 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~-~i~~~~~~ 75 (454)
++||+|||||++|+++|..|++. +.+|+|+|+....+.+..... ++. .....++.....+.+.+ +++++.++
T Consensus 16 ~~dvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 93 (319)
T 3cty_A 16 DFDVVIVGAGAAGFSAAVYAARS--GFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREGVE 93 (319)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEETCC
T ss_pred CCcEEEECcCHHHHHHHHHHHhC--CCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEEee
Confidence 47999999999999999999998 899999999654333222111 111 11111222333344455 89988889
Q ss_pred EEEEeCccc--EEEeccCcEEEecEEEEecCCCCCCCCCC-Cce---eeeeccchHHHHHHHhhcCCeEEEEcCchhHHH
Q psy1545 76 VAAIDPRVN--CVITEKQNRIKYKTLCICTGASPRKIWYS-PHV---ITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATE 149 (454)
Q Consensus 76 v~~i~~~~~--~v~~~~g~~i~~d~lviAtG~~p~~~~~~-~~~---~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e 149 (454)
+..++.... .|.+ ++..+.||+||+|||++|+.|+++ ... ..+..... .......+++++|||+|.+|+|
T Consensus 94 v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~~~i~g~~~~~~~~~~~~~~---~~~~~~~~~~v~viG~G~~g~e 169 (319)
T 3cty_A 94 VRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCST---CDGYLFKGKRVVTIGGGNSGAI 169 (319)
T ss_dssp EEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHH---HHGGGGBTSEEEEECCSHHHHH
T ss_pred EEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcccCCCCChHHhCCceEEEEEe---cchhhcCCCeEEEECCCHHHHH
Confidence 998886554 4555 567899999999999998888776 111 11111111 1222345899999999999999
Q ss_pred HHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCcc
Q psy1545 150 LVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSR 227 (454)
Q Consensus 150 ~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 227 (454)
+|..|. +.+|+++++.+.+.. ...+.+.+.+
T Consensus 170 ~a~~l~~~g~~V~~i~~~~~~~~-------~~~l~~~l~~---------------------------------------- 202 (319)
T 3cty_A 170 AAISMSEYVKNVTIIEYMPKYMC-------ENAYVQEIKK---------------------------------------- 202 (319)
T ss_dssp HHHHHTTTBSEEEEECSSSSCCS-------CHHHHHHHHH----------------------------------------
T ss_pred HHHHHHhhCCcEEEEEcCCccCC-------CHHHHHHHhc----------------------------------------
Confidence 999997 899999998876532 1223333323
Q ss_pred CCceEEEeCceEEEEEcCCCCccceEEEec---CCc--EEecCEEEEeeccCcCcccccCCCCceecCCCceEecccccc
Q psy1545 228 DTKITIEYSCEVERIVDSEDDTCNAYVKLT---NGH--THACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQT 302 (454)
Q Consensus 228 ~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g~--~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t 302 (454)
.||++++++.++++..++ +....+.+. +|+ ++++|.|++|+|++|+.+ +++..+++++++|+|.||+++||
T Consensus 203 -~gv~i~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~-~l~~~gl~~~~~g~i~vd~~~~t 278 (319)
T 3cty_A 203 -RNIPYIMNAQVTEIVGDG--KKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTS-FLKDSGVKLDERGYIVVDSRQRT 278 (319)
T ss_dssp -TTCCEECSEEEEEEEESS--SSEEEEEEEETTTCCEEEECCSEEEECCCEEECCG-GGTTSCCCBCTTSCBCCCTTCBC
T ss_pred -CCcEEEcCCeEEEEecCC--ceEEEEEEEEcCCCceEEEecCEEEEeeCCccChH-HHhhccccccCCccEeCCCCCcc
Confidence 899999999999998764 223345554 564 699999999999999998 88888888888899999999999
Q ss_pred ccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCC
Q psy1545 303 SISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKN 350 (454)
Q Consensus 303 ~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 350 (454)
+.|+|||+|||+..+ +++++.|..||+.||.||...+.+
T Consensus 279 ~~~~vya~GD~~~~~---------~~~~~~A~~~g~~aa~~i~~~l~~ 317 (319)
T 3cty_A 279 SVPGVYAAGDVTSGN---------FAQIASAVGDGCKAALSLYSDSIS 317 (319)
T ss_dssp SSTTEEECSTTBTTC---------CCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEeecccCcc---------hhhHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999753 357889999999999999876543
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=297.70 Aligned_cols=282 Identities=17% Similarity=0.163 Sum_probs=208.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCCcccccccc------ccccccccccchhhhHHHHHhc-CcEEEcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSGIVKAVTKT------VPVTKLLSDITVEETDANKFEG-LCTVIVD 74 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~ 74 (454)
+||+|||||++|+++|..|++. +. +|+|||++...+.+... +.++.......+.....+.+.+ +++++.+
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~--g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~ 79 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRG--GVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEMT 79 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT--TCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEECS
T ss_pred ceEEEECccHHHHHHHHHHHHC--CCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 7999999999999999999998 88 99999997544333221 1111111112222333344445 8998888
Q ss_pred eEEEEeCccc--EEEeccCcEEEecEEEEecCCCCCCCCCCCc-e---eeeeccchHHHHHHHhhcCCeEEEEcCchhHH
Q psy1545 75 TVAAIDPRVN--CVITEKQNRIKYKTLCICTGASPRKIWYSPH-V---ITIRDTDSVAVLQEKLKSAKKIVVIGNGGIAT 148 (454)
Q Consensus 75 ~v~~i~~~~~--~v~~~~g~~i~~d~lviAtG~~p~~~~~~~~-~---~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~ 148 (454)
++..++.+.. .+.+.+++.+.||+||+|||++|+.|+++.. . ..++.... .......+++++|||+|.+|+
T Consensus 80 ~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~v~VvG~G~~g~ 156 (311)
T 2q0l_A 80 AVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCAT---CDGFFYKNKEVAVLGGGDTAV 156 (311)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCCCBTHHHHBTTTEESCHH---HHGGGGTTSEEEEECCSHHHH
T ss_pred EEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCCCCChhhccCCcEEEeec---CChhhcCCCEEEEECCCHHHH
Confidence 9998886655 5666778899999999999999888877611 0 11112111 122234589999999999999
Q ss_pred HHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCc
Q psy1545 149 ELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSS 226 (454)
Q Consensus 149 e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 226 (454)
|+|..|. +.+|+++++++++.. ++ .+.+.+.
T Consensus 157 e~A~~l~~~g~~Vtlv~~~~~~~~---~~----~~~~~l~---------------------------------------- 189 (311)
T 2q0l_A 157 EEAIYLANICKKVYLIHRRDGFRC---AP----ITLEHAK---------------------------------------- 189 (311)
T ss_dssp HHHHHHHTTSSEEEEECSSSSCCS---CH----HHHHHHH----------------------------------------
T ss_pred HHHHHHHhcCCEEEEEeeCCccCC---CH----HHHHHHh----------------------------------------
Confidence 9999986 899999999876531 21 2222221
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEec---CCc--EEecCEEEEeeccCcCcccccCCCC----ceecCCCceEec
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLT---NGH--THACDIVVSAIGVVPNSNIQVHGTP----FELAPDCGIGVN 297 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g~--~~~~D~vi~a~G~~p~~~~~~~~~~----l~~~~~g~i~vd 297 (454)
++.||++++++.+.++..+++ ....+.++ +|+ ++++|.|++|+|++|+.+ +++..+ +.++++|+|.||
T Consensus 190 ~~~gv~v~~~~~v~~i~~~~~--~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~-~l~~~g~~~~l~~~~~g~i~vd 266 (311)
T 2q0l_A 190 NNDKIEFLTPYVVEEIKGDAS--GVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNA-VLKQEDNSMLCKCDEYGSIVVD 266 (311)
T ss_dssp TCTTEEEETTEEEEEEEEETT--EEEEEEEEETTTCCEEEEECSEEEECSCEEECCG-GGBCTTSCBSSCBCTTSCBCCC
T ss_pred hCCCeEEEeCCEEEEEECCCC--cEeEEEEEecCCCceEEEecCEEEEEecCccChh-hhhcccccceeEeccCCCEEeC
Confidence 237999999999999987532 22345555 564 799999999999999998 888774 888888999999
Q ss_pred cccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 298 ELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 298 ~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
+++||+.|+|||+|||+..+ +++++.|..||+.||.||...+
T Consensus 267 ~~~~t~~~~vya~GD~~~~~---------~~~~~~A~~~g~~aa~~i~~~l 308 (311)
T 2q0l_A 267 FSMKTNVQGLFAAGDIRIFA---------PKQVVCAASDGATAALSVISYL 308 (311)
T ss_dssp TTCBCSSTTEEECSTTBTTC---------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCCCeEEcccccCcc---------hHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999853 3678899999999999997643
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-38 Score=301.85 Aligned_cols=288 Identities=20% Similarity=0.183 Sum_probs=212.6
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC----ccccccccc-------cccccccccchhhhHHHHHhc-C
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG----IVKAVTKTV-------PVTKLLSDITVEETDANKFEG-L 68 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~----~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~ 68 (454)
|++||+|||||++|+++|..|++. +++|+|||+.+ ..++.+... .++......++.......+.+ +
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~~--g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 98 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLARA--EIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFG 98 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHT--TCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC--CCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcC
Confidence 468999999999999999999998 89999999954 333333221 111111122233333344444 9
Q ss_pred cEEEcceEEEEeCcccEEEe-----ccCcEEEecEEEEecCCCCCCCCCCC-ceeeeeccchHHHHHHH--hhcCCeEEE
Q psy1545 69 CTVIVDTVAAIDPRVNCVIT-----EKQNRIKYKTLCICTGASPRKIWYSP-HVITIRDTDSVAVLQEK--LKSAKKIVV 140 (454)
Q Consensus 69 i~~~~~~v~~i~~~~~~v~~-----~~g~~i~~d~lviAtG~~p~~~~~~~-~~~~~~~~~~~~~l~~~--~~~~~~vvV 140 (454)
++++.+++..++.+...+.+ .++..+.||+||+|||++|+.|+++. ..+.............. ...+++++|
T Consensus 99 v~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 178 (338)
T 3itj_A 99 TEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAV 178 (338)
T ss_dssp CEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEE
T ss_pred CEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCCCCCchhccCccEEEchhcccchhhcCCCEEEE
Confidence 99988889999987765544 35678999999999999998888772 11100111111222222 235899999
Q ss_pred EcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccc
Q psy1545 141 IGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHT 218 (454)
Q Consensus 141 vG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (454)
||+|.+|+|+|..|. +.+|+++++.+.+.+ ...+.+.+.+
T Consensus 179 vG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-------~~~~~~~l~~------------------------------- 220 (338)
T 3itj_A 179 IGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-------STIMQKRAEK------------------------------- 220 (338)
T ss_dssp ECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------CHHHHHHHHH-------------------------------
T ss_pred ECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-------CHHHHHHHHh-------------------------------
Confidence 999999999999997 899999999887654 2333344422
Q ss_pred ccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC-----CcEEecCEEEEeeccCcCcccccCCCCceecCCCc
Q psy1545 219 QVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN-----GHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCG 293 (454)
Q Consensus 219 ~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~-----g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~ 293 (454)
..||++++++.+.+++.+++ ....+.+++ ++++++|.||+|+|++|+.. ++.. ++.++++|+
T Consensus 221 ---------~~gv~i~~~~~v~~i~~~~~--~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~-~~~~-~l~~~~~G~ 287 (338)
T 3itj_A 221 ---------NEKIEILYNTVALEAKGDGK--LLNALRIKNTKKNEETDLPVSGLFYAIGHTPATK-IVAG-QVDTDEAGY 287 (338)
T ss_dssp ---------CTTEEEECSEEEEEEEESSS--SEEEEEEEETTTTEEEEEECSEEEECSCEEECCG-GGBT-TBCBCTTSC
T ss_pred ---------cCCeEEeecceeEEEEcccC--cEEEEEEEECCCCceEEEEeCEEEEEeCCCCChh-HhhC-ceEecCCCc
Confidence 25999999999999987652 244466665 46799999999999999998 7776 888888999
Q ss_pred eEe-ccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCC
Q psy1545 294 IGV-NELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKN 350 (454)
Q Consensus 294 i~v-d~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 350 (454)
+.+ |++++|+.|+|||+|||+..+ ++.+..|+.||+.||.||...+.+
T Consensus 288 i~v~~~~~~t~~~~vya~GD~~~~~---------~~~~~~A~~~g~~aa~~i~~~l~~ 336 (338)
T 3itj_A 288 IKTVPGSSLTSVPGFFAAGDVQDSK---------YRQAITSAGSGCMAALDAEKYLTS 336 (338)
T ss_dssp BCCCTTSSBCSSTTEEECGGGGCSS---------CCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEcCcccccCCCCEEEeeccCCCC---------ccceeeehhhhHHHHHHHHHHHhc
Confidence 995 788999999999999999743 357788999999999999876544
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=299.01 Aligned_cols=285 Identities=20% Similarity=0.226 Sum_probs=212.3
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc------cccchhhhHHHHHhc-CcEEEc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL------SDITVEETDANKFEG-LCTVIV 73 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~i~~~~ 73 (454)
|++||+|||||++|+++|..|++. +.+|+|||++ .++.+.+....... ...++.....+.+.+ +++++.
T Consensus 14 ~~~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 89 (323)
T 3f8d_A 14 EKFDVIIVGLGPAAYGAALYSARY--MLKTLVIGET--PGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL 89 (323)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESS--TTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE
T ss_pred CccCEEEECccHHHHHHHHHHHHC--CCcEEEEecc--CCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE
Confidence 357999999999999999999998 8999999998 33333321111111 112222333344445 888877
Q ss_pred ceEEEEeCccc--EEEeccCcEEEecEEEEecCCCCCCCCCC-Cce---eeeeccchHHHHHHHhhcCCeEEEEcCchhH
Q psy1545 74 DTVAAIDPRVN--CVITEKQNRIKYKTLCICTGASPRKIWYS-PHV---ITIRDTDSVAVLQEKLKSAKKIVVIGNGGIA 147 (454)
Q Consensus 74 ~~v~~i~~~~~--~v~~~~g~~i~~d~lviAtG~~p~~~~~~-~~~---~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g 147 (454)
.+|..++.+.. .+.++++..+.||+||+|||+.|+.|+++ ... ..+... .........+++++|+|+|.+|
T Consensus 90 ~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~---~~~~~~~~~~~~v~vvG~G~~~ 166 (323)
T 3f8d_A 90 DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYC---SVADAPLFKNRVVAVIGGGDSA 166 (323)
T ss_dssp SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCCCCTTTTTTBTTTEESC---HHHHGGGGTTCEEEEECCSHHH
T ss_pred EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccCCCCchhhhcCCceEEe---ccCCHhHcCCCEEEEECCCHHH
Confidence 89999987643 56777778999999999999998888776 111 111111 1111123358999999999999
Q ss_pred HHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccC
Q psy1545 148 TELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGS 225 (454)
Q Consensus 148 ~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 225 (454)
+|+|..+. +.+|+++++++++.+ + ..+.+.+.
T Consensus 167 ~e~a~~l~~~g~~v~~~~~~~~~~~---~----~~~~~~~~--------------------------------------- 200 (323)
T 3f8d_A 167 LEGAEILSSYSTKVYLIHRRDTFKA---Q----PIYVETVK--------------------------------------- 200 (323)
T ss_dssp HHHHHHHHHHSSEEEEECSSSSCCS---C----HHHHHHHH---------------------------------------
T ss_pred HHHHHHHHHhCCeEEEEEeCCCCCc---C----HHHHHHHH---------------------------------------
Confidence 99999987 999999999887654 1 12222221
Q ss_pred ccCCceEEEeCceEEEEEcCCCCccceEEEecC---Cc--EEecCEEEEeeccCcCcccccCCCCceecCCCceEecccc
Q psy1545 226 SRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN---GH--THACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELM 300 (454)
Q Consensus 226 l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~---g~--~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~ 300 (454)
++.||++++++.+.++..++. ...+.+.+ |+ ++++|.|++|+|++|+.+ +++..+++++++|+|.||+++
T Consensus 201 -~~~gv~~~~~~~v~~i~~~~~---~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~-~~~~~g~~~~~~g~i~vd~~~ 275 (323)
T 3f8d_A 201 -KKPNVEFVLNSVVKEIKGDKV---VKQVVVENLKTGEIKELNVNGVFIEIGFDPPTD-FAKSNGIETDTNGYIKVDEWM 275 (323)
T ss_dssp -TCTTEEEECSEEEEEEEESSS---EEEEEEEETTTCCEEEEECSEEEECCCEECCHH-HHHHTTCCBCTTSSBCCCTTC
T ss_pred -hCCCcEEEeCCEEEEEeccCc---eeEEEEEECCCCceEEEEcCEEEEEECCCCChh-HHhhcCeeecCCCcEecCCCc
Confidence 236999999999999987642 44566765 65 799999999999999988 888888998889999999999
Q ss_pred ccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCC
Q psy1545 301 QTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKN 350 (454)
Q Consensus 301 ~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 350 (454)
||+.|||||+|||+..+ ..++++..|..||+.||.||+..+.+
T Consensus 276 ~t~~~~vya~GD~~~~~-------~~~~~~~~A~~~g~~aa~~i~~~l~~ 318 (323)
T 3f8d_A 276 RTSVPGVFAAGDCTSAW-------LGFRQVITAVAQGAVAATSAYRYVTE 318 (323)
T ss_dssp BCSSTTEEECSTTBSTT-------TTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCEEEcceecCCC-------CcccceeehhhHHHHHHHHHHHHHHH
Confidence 99999999999999853 11467889999999999999876543
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-38 Score=295.66 Aligned_cols=277 Identities=16% Similarity=0.111 Sum_probs=209.0
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccc-cccc--cccccchhhhHHHHHhc--CcEEEcce
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTV-PVTK--LLSDITVEETDANKFEG--LCTVIVDT 75 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~--~i~~~~~~ 75 (454)
|++||+|||||++|+++|..|++. +.+|+|+|+++..+...... .+.. .....++.....+.+.+ +++++.++
T Consensus 1 m~~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 78 (297)
T 3fbs_A 1 MKFDVIIIGGSYAGLSAALQLGRA--RKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGR 78 (297)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEESC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEeE
Confidence 889999999999999999999998 89999999986544322111 1111 11112233333444444 78888889
Q ss_pred EEEEeCcc--cEEEeccCcEEEecEEEEecCCCCCCCCCC-Cce---eeeeccchHHHHHHHhhcCCeEEEEcCchhHHH
Q psy1545 76 VAAIDPRV--NCVITEKQNRIKYKTLCICTGASPRKIWYS-PHV---ITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATE 149 (454)
Q Consensus 76 v~~i~~~~--~~v~~~~g~~i~~d~lviAtG~~p~~~~~~-~~~---~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e 149 (454)
|+.++++. ..|.+.+++++.||+||+|||++|+.|+++ ... ..+.... ........+++++|+|+|.+|+|
T Consensus 79 v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~v~vvG~G~~~~e 155 (297)
T 3fbs_A 79 VTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCP---YCHGYELDQGKIGVIAASPMAIH 155 (297)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCH---HHHTGGGTTCEEEEECCSTTHHH
T ss_pred EEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcc---cCcchhhcCCEEEEEecCccHHH
Confidence 99998764 367777888999999999999998888776 111 1111111 11111224899999999999999
Q ss_pred HHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCcc
Q psy1545 150 LVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSR 227 (454)
Q Consensus 150 ~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 227 (454)
+|..|. + +|+++.+++. .+...+.+.+.+
T Consensus 156 ~a~~l~~~g-~v~~v~~~~~--------~~~~~~~~~l~~---------------------------------------- 186 (297)
T 3fbs_A 156 HALMLPDWG-ETTFFTNGIV--------EPDADQHALLAA---------------------------------------- 186 (297)
T ss_dssp HHHHGGGTS-EEEEECTTTC--------CCCHHHHHHHHH----------------------------------------
T ss_pred HHHHhhhcC-cEEEEECCCC--------CCCHHHHHHHHH----------------------------------------
Confidence 999997 7 9999987654 223344455543
Q ss_pred CCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceec--CCC-ceEecccccccc
Q psy1545 228 DTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELA--PDC-GIGVNELMQTSI 304 (454)
Q Consensus 228 ~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~--~~g-~i~vd~~~~t~~ 304 (454)
.||+++. +.++++..++ .+.+++|+++++|.|++|+|++|+.+ +++..+++++ ++| ++.||++++|+.
T Consensus 187 -~gv~i~~-~~v~~i~~~~------~v~~~~g~~~~~D~vi~a~G~~p~~~-~~~~~g~~~~~~~~G~~i~vd~~~~t~~ 257 (297)
T 3fbs_A 187 -RGVRVET-TRIREIAGHA------DVVLADGRSIALAGLFTQPKLRITVD-WIEKLGCAVEEGPMGSTIVTDPMKQTTA 257 (297)
T ss_dssp -TTCEEEC-SCEEEEETTE------EEEETTSCEEEESEEEECCEEECCCS-CHHHHTCCEEEETTEEEECCCTTCBCSS
T ss_pred -CCcEEEc-ceeeeeecCC------eEEeCCCCEEEEEEEEEccCcccCch-hHHhcCCccccCCCCceEEeCCCCccCC
Confidence 8999996 8999998642 58889999999999999999999998 8887777776 457 899999999999
Q ss_pred CceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCC
Q psy1545 305 SNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKN 350 (454)
Q Consensus 305 ~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 350 (454)
|+|||+|||+..+ ++++.|..||+.||.||...+.+
T Consensus 258 ~~vya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~l~~ 293 (297)
T 3fbs_A 258 RGIFACGDVARPA----------GSVALAVGDGAMAGAAAHRSILF 293 (297)
T ss_dssp TTEEECSGGGCTT----------CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEeecCCch----------HHHHHHHHhHHHHHHHHHHHHhh
Confidence 9999999999843 67889999999999999876543
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-38 Score=311.35 Aligned_cols=298 Identities=14% Similarity=0.169 Sum_probs=218.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
++|||||||+||++||..|++.+++.+|+|||+++.+.++.....+.......+......+.+.+ +++++.++|+.+|+
T Consensus 3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~~v~~id~ 82 (401)
T 3vrd_B 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHDSALGIDP 82 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECSCEEEEET
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEeEEEEEEc
Confidence 57999999999999999999987788999999998765554433322222222222222344444 99999999999999
Q ss_pred cccEEEeccCcEEEecEEEEecCCCCCCCCCC--------CceeeeeccchHHHHHHHhhc--CCeEEEEcCch------
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGASPRKIWYS--------PHVITIRDTDSVAVLQEKLKS--AKKIVVIGNGG------ 145 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~--------~~~~~~~~~~~~~~l~~~~~~--~~~vvVvG~G~------ 145 (454)
+.+.+.+.+|.++.||+||||||++++.++++ ..++.+.+.+++..+++.+.. ..+.+|+++|.
T Consensus 83 ~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~~ 162 (401)
T 3vrd_B 83 DKKLVKTAGGAEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRCP 162 (401)
T ss_dssp TTTEEEETTSCEEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBCT
T ss_pred cCcEEEecccceeecceeeeccCCccccCCccCchhhcccCccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEee
Confidence 99999999999999999999999998877766 233456677777777776542 23344443332
Q ss_pred -----hHHHHHHHhc----CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcc
Q psy1545 146 -----IATELVHELS----NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDW 216 (454)
Q Consensus 146 -----~g~e~a~~l~----g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (454)
.+++++..+. +.+|+++++.+.+... ..+.+.+.+
T Consensus 163 ~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~-------~~~~~~~~~----------------------------- 206 (401)
T 3vrd_B 163 PGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQ-------AQFTKGWER----------------------------- 206 (401)
T ss_dssp THHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTH-------HHHHHHHHH-----------------------------
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEEEccccccccc-------ccccHHHHH-----------------------------
Confidence 3345555543 5789999887765321 111111111
Q ss_pred ccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEe
Q psy1545 217 HTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGV 296 (454)
Q Consensus 217 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~v 296 (454)
.+...+++.||++++++.+..++.+.+ ...+++++|+++++|.+++++|.+|+. ++...++. +++|+|.|
T Consensus 207 ----~~~~~l~~~gi~v~~~~~v~~v~~~~~---~~~v~~~~g~~i~~D~vi~~~g~~~~~--~~~~~gl~-~~~G~i~V 276 (401)
T 3vrd_B 207 ----LYGFGTENALIEWHPGPDAAVVKTDTE---AMTVETSFGETFKAAVINLIPPQRAGK--IAQSASLT-NDSGWCPV 276 (401)
T ss_dssp ----HSCTTSTTCSEEEECTTTTCEEEEETT---TTEEEETTSCEEECSEEEECCCEEECH--HHHHTTCC-CTTSSBCB
T ss_pred ----HHHHHHHhcCcEEEeCceEEEEEeccc---ceEEEcCCCcEEEeeEEEEecCcCCch--hHhhcccc-ccCCCEEE
Confidence 012344668999999999988886653 467889999999999999999999985 77777874 77899999
Q ss_pred ccc-cc-cccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcc
Q psy1545 297 NEL-MQ-TSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPV 353 (454)
Q Consensus 297 d~~-~~-t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~ 353 (454)
|++ || |++|||||+|||+... + .+++++.|.+||+++|+||++.+.|+++
T Consensus 277 D~~tl~~t~~p~VfAiGDva~~~-~------~pk~a~~A~~qa~v~A~ni~~~l~G~~~ 328 (401)
T 3vrd_B 277 DIRTFESSLQPGIHVIGDACNAA-P------MPKSAYSANSQAKVAAAAVVALLKGEEP 328 (401)
T ss_dssp CTTTCBBSSSTTEEECGGGBCCT-T------SCBSHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCcceecCCCCEEEecccccCC-C------CCchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 987 66 8999999999998642 1 2468899999999999999988877643
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=296.51 Aligned_cols=286 Identities=21% Similarity=0.185 Sum_probs=209.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc------cccccccccccchhhhHHHHHhc-CcEEEcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK------TVPVTKLLSDITVEETDANKFEG-LCTVIVD 74 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~ 74 (454)
++||+|||||++|+++|..|++. +.+|+|+|+....+.+.. ++.++..+....+.......+.+ +++++.+
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAARA--NLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD 82 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTT--TCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC
T ss_pred cCCEEEECcCHHHHHHHHHHHHC--CCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEe
Confidence 57999999999999999999998 899999998644332211 11111111111222222333444 8999888
Q ss_pred eEEEEeCcccEEE-eccCcEEEecEEEEecCCCCCCCCCC-Cce---eeeeccchHHHHHHHhhcCCeEEEEcCchhHHH
Q psy1545 75 TVAAIDPRVNCVI-TEKQNRIKYKTLCICTGASPRKIWYS-PHV---ITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATE 149 (454)
Q Consensus 75 ~v~~i~~~~~~v~-~~~g~~i~~d~lviAtG~~p~~~~~~-~~~---~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e 149 (454)
++..++.....+. +.++..+.||+||+|||++|..|+++ ... ..+++. ......+..+++++|||+|.+|+|
T Consensus 83 ~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~v~ViG~G~~g~e 159 (320)
T 1trb_A 83 HINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSAC---ATSDGFFYRNQKVAVIGGGNTAVE 159 (320)
T ss_dssp CEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCCCCHHHHHTBTTTEESC---HHHHGGGGTTSEEEEECSSHHHHH
T ss_pred eeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCCCCCCChHHhCCceeEec---ccCCccccCCCeEEEECCCHHHHH
Confidence 8999987655443 55678899999999999998888776 111 111121 122222345899999999999999
Q ss_pred HHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCcc
Q psy1545 150 LVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSR 227 (454)
Q Consensus 150 ~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 227 (454)
+|..|. +.+|+++++.+.+.. ++.+.+.+.+.+ +
T Consensus 160 ~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l-----------------------------------------~ 195 (320)
T 1trb_A 160 EALYLSNIASEVHLIHRRDGFRA---EKILIKRLMDKV-----------------------------------------E 195 (320)
T ss_dssp HHHHHTTTSSEEEEECSSSSCCC---CHHHHHHHHHHH-----------------------------------------H
T ss_pred HHHHHHhcCCeEEEEEeCCcccc---CHHHHHHHHHhc-----------------------------------------c
Confidence 999997 899999999877642 333333333333 3
Q ss_pred CCceEEEeCceEEEEEcCCCCccceEEEecC----C--cEEecCEEEEeeccCcCcccccCCCCceecCCCceEecccc-
Q psy1545 228 DTKITIEYSCEVERIVDSEDDTCNAYVKLTN----G--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELM- 300 (454)
Q Consensus 228 ~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~----g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~- 300 (454)
+.||++++++.+.++..+++ ....+.+++ | +++++|.|++|+|++|+.+ ++. .++.++ +|+|.||+++
T Consensus 196 ~~gv~i~~~~~v~~i~~~~~--~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~-~~~-~~l~~~-~G~i~vd~~~~ 270 (320)
T 1trb_A 196 NGNIILHTNRTLEEVTGDQM--GVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA-IFE-GQLELE-NGYIKVQSGIH 270 (320)
T ss_dssp TSSEEEECSCEEEEEEECSS--SEEEEEEECCTTCCCCEEEECSEEEECSCEEESCG-GGT-TTSCEE-TTEECCCCSSS
T ss_pred cCCeEEEcCceeEEEEcCCC--ceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChH-Hhc-cccccc-CceEEECCCcc
Confidence 48999999999999987652 233466654 4 5799999999999999998 776 467888 9999999997
Q ss_pred ----ccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCC
Q psy1545 301 ----QTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKN 350 (454)
Q Consensus 301 ----~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 350 (454)
+|+.|+|||+|||+..+ ++.+..|..||+.||.+|...+.+
T Consensus 271 ~~~~~t~~~~vya~GD~~~~~---------~~~~~~A~~~g~~aa~~i~~~l~~ 315 (320)
T 1trb_A 271 GNATQTSIPGVFAAGDVMDHI---------YRQAITSAGTGCMAALDAERYLDG 315 (320)
T ss_dssp SCTTBCSSTTEEECGGGGCSS---------SCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccccCCCCCEEEcccccCCc---------chhhhhhhccHHHHHHHHHHHHHh
Confidence 79999999999999853 356788999999999999876654
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-37 Score=292.18 Aligned_cols=284 Identities=19% Similarity=0.192 Sum_probs=204.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEE-ECCCCcccccccccc-------ccccccccchhhhHHHHHhc-CcEEE
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGL-VTPSGIVKAVTKTVP-------VTKLLSDITVEETDANKFEG-LCTVI 72 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~l-ie~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~i~~~ 72 (454)
++||+|||||+||++||..|++. +.+|+| +|+... ++.+.... +.......++.......+.+ +++++
T Consensus 4 ~~~vvIIG~G~aGl~aA~~l~~~--g~~v~li~e~~~~-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 80 (315)
T 3r9u_A 4 MLDVAIIGGGPAGLSAGLYATRG--GLKNVVMFEKGMP-GGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHE 80 (315)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHH--TCSCEEEECSSST-TGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHC--CCCeEEEEeCCCC-CceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEE
Confidence 47999999999999999999998 899999 999544 33222211 11111112233333344445 89998
Q ss_pred cceEEEEeCcc--cEEE--eccCcEEEecEEEEecCCCCCCCCCC-CceeeeeccchHHHHHHHhhcCCeEEEEcCchhH
Q psy1545 73 VDTVAAIDPRV--NCVI--TEKQNRIKYKTLCICTGASPRKIWYS-PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIA 147 (454)
Q Consensus 73 ~~~v~~i~~~~--~~v~--~~~g~~i~~d~lviAtG~~p~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g 147 (454)
.+++..+ .+. ..+. +..+..+.||+||+|||++|+.|+++ ...+.................+++++|+|+|.+|
T Consensus 81 ~~~v~~i-~~~~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~~ 159 (315)
T 3r9u_A 81 MVGVEQI-LKNSDGSFTIKLEGGKTELAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTA 159 (315)
T ss_dssp CCCEEEE-EECTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGGGGTTSEEEEECCBHHH
T ss_pred EEEEEEE-ecCCCCcEEEEEecCCEEEeCEEEEeeCCCCCCCCCCChhhcCCCeEEeeecccccccCcCEEEEECCCHHH
Confidence 8899888 433 2222 33222899999999999998888776 1111101111112222233458999999999999
Q ss_pred HHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccC
Q psy1545 148 TELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGS 225 (454)
Q Consensus 148 ~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 225 (454)
+|+|..+. +.+|+++++++++.. ++ ..+.+.+
T Consensus 160 ~e~a~~l~~~g~~v~~~~~~~~~~~---~~---~~~~~~~---------------------------------------- 193 (315)
T 3r9u_A 160 LEEALYLANICSKIYLIHRRDEFRA---AP---STVEKVK---------------------------------------- 193 (315)
T ss_dssp HHHHHHHHTTSSEEEEECSSSSCBS---CH---HHHHHHH----------------------------------------
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCC---CH---HHHHHHH----------------------------------------
Confidence 99999986 899999999887632 21 2222222
Q ss_pred ccCCceEEEeCceEEEEEcCCCCccceEEEec--CCc--EEecCEEEEeeccCcCcccccCC---CC-ceecCCCceEec
Q psy1545 226 SRDTKITIEYSCEVERIVDSEDDTCNAYVKLT--NGH--THACDIVVSAIGVVPNSNIQVHG---TP-FELAPDCGIGVN 297 (454)
Q Consensus 226 l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~--~g~--~~~~D~vi~a~G~~p~~~~~~~~---~~-l~~~~~g~i~vd 297 (454)
++.||++++++.+.++..+++ ....+.+. +|+ ++++|.|++|+|++|+.. ++.. .| ++++++|+|.||
T Consensus 194 -~~~gv~~~~~~~v~~i~~~~~--~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~-~~~~~~~~g~l~~~~~g~i~vd 269 (315)
T 3r9u_A 194 -KNEKIELITSASVDEVYGDKM--GVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNE-ILKQDDSKFLCNMEEGGQVSVD 269 (315)
T ss_dssp -HCTTEEEECSCEEEEEEEETT--EEEEEEEECTTSCEEEECCSCEEECSCEEECCG-GGBCTTSCBSSCBCTTSCBCCC
T ss_pred -hcCCeEEEeCcEEEEEEcCCC--cEEEEEEEcCCCCeEEeecCeEEEEEcCCCCch-hhhcccccceeeecCCCcEEeC
Confidence 238999999999999987652 23345554 775 799999999999999998 7666 54 888888999999
Q ss_pred cccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 298 ELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 298 ~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
+++||+.|+|||+|||+..+ ++.+..|+.||+.||.||...+
T Consensus 270 ~~~~t~~~~v~a~GD~~~~~---------~~~~~~A~~~g~~aa~~i~~~l 311 (315)
T 3r9u_A 270 LKMQTSVAGLFAAGDLRKDA---------PKQVICAAGDGAVAALSAMAYI 311 (315)
T ss_dssp TTCBCSSTTEEECGGGBTTC---------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCCEEEeecccCCc---------hhhhhhHHhhHHHHHHHHHHHH
Confidence 99999999999999998643 4678899999999999998654
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-37 Score=304.62 Aligned_cols=304 Identities=14% Similarity=0.100 Sum_probs=223.3
Q ss_pred ccEEEECCCHHHHHHHHHHhh-cCCCCeEEEECCCCcccccccccccccc-ccccchhhhHHHHHhc-CcEEEcceEEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAF-LHPGESIGLVTPSGIVKAVTKTVPVTKL-LSDITVEETDANKFEG-LCTVIVDTVAAI 79 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~-~~~g~~v~lie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~i~~~~~~v~~i 79 (454)
+||||||||++|+++|..|++ ..++.+|+|||+++.+.+....+.+... ....++.....+.+.+ +++++.++|+.+
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~~~v~~i 84 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQI 84 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEECSCEEEE
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEEeEEEEE
Confidence 689999999999999999999 2238999999999876543333222111 1111222333455555 999999999999
Q ss_pred eCcccEEEeccCcEEEecEEEEecCCCCCCCCCC--C----ceeeeeccchHHHHHHHhh---cCCeEEEEcCchhH---
Q psy1545 80 DPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS--P----HVITIRDTDSVAVLQEKLK---SAKKIVVIGNGGIA--- 147 (454)
Q Consensus 80 ~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~--~----~~~~~~~~~~~~~l~~~~~---~~~~vvVvG~G~~g--- 147 (454)
+++.+.|.+++++++.||+||+|||++|+.++++ . +.+.+++.+++.++.+.+. ++++++|||+|..+
T Consensus 85 d~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~ 164 (437)
T 3sx6_A 85 DAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCF 164 (437)
T ss_dssp ETTTTEEEETTSCEEECSEEEECCCCEECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCC
T ss_pred EcCCCEEEECCCCEEECCEEEECCCCCcCcccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcC
Confidence 9999999998888999999999999999888776 1 4456677788877766443 25667899986654
Q ss_pred ---HHHHHHh----c--CCc-----EEEEEeCCCcccccc--CCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCC
Q psy1545 148 ---TELVHEL----S--NVD-----IVWVVKDKHISATFL--DPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPS 211 (454)
Q Consensus 148 ---~e~a~~l----~--g~~-----V~~i~~~~~~~~~~~--d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (454)
+|+|..+ . |.+ |+++++.+.+....+ .++....+.+.+.+
T Consensus 165 G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~------------------------ 220 (437)
T 3sx6_A 165 GPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKE------------------------ 220 (437)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHH------------------------
T ss_pred cHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHH------------------------
Confidence 8888544 2 553 999999887643211 13455555555544
Q ss_pred CCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEe--cC-----CcEEecCEEEEeeccCcCcccccCCC
Q psy1545 212 LGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL--TN-----GHTHACDIVVSAIGVVPNSNIQVHGT 284 (454)
Q Consensus 212 l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~--~~-----g~~~~~D~vi~a~G~~p~~~~~~~~~ 284 (454)
.||++++++.+++++.++ +.+.. .+ ++++++|.+++++|++|+.. +....
T Consensus 221 -----------------~gI~~~~~~~v~~v~~~~-----v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~-~~~~~ 277 (437)
T 3sx6_A 221 -----------------EGIEAYTNCKVTKVEDNK-----MYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPA-VAGVE 277 (437)
T ss_dssp -----------------TTCEEECSEEEEEEETTE-----EEEEEECTTSCEEEEEEEECSEEEEECCEECCHH-HHTST
T ss_pred -----------------CCCEEEcCCEEEEEECCe-----EEEEecccCCccccceEEEEeEEEEcCCCcCchh-hhccc
Confidence 899999999999998753 22222 23 56799999999999998865 55456
Q ss_pred CceecCCCceEecccccc-ccCceeecCcccccCCcc-ccch-hhccChHHHHHHHHHHHhhhcCCCCCCcce
Q psy1545 285 PFELAPDCGIGVNELMQT-SISNVYAAGDVCTPSWDL-AKQW-FQMRLWTQAKHMGTYAAKCMVGAVKNEPVI 354 (454)
Q Consensus 285 ~l~~~~~g~i~vd~~~~t-~~~~Iya~GD~~~~~~~~-~~~~-~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~ 354 (454)
++ .+++|+|.||+++|| ++|||||+|||+..+... .+.+ ..+++++.|..||+++|+||...+.|++..
T Consensus 278 gl-~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~g~~~~ 349 (437)
T 3sx6_A 278 GL-CNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADLEGRKGE 349 (437)
T ss_dssp TT-BCTTSCBCBCTTSBBSSCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHTTTSCCC
T ss_pred cc-cCCCCcEEeChhccCCCCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 67 578899999999998 999999999999864211 0000 124678999999999999999988876543
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=292.16 Aligned_cols=287 Identities=17% Similarity=0.180 Sum_probs=210.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccc------ccc---cccchhhhHHHHHhc-CcEE
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVT------KLL---SDITVEETDANKFEG-LCTV 71 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~~~~-~i~~ 71 (454)
++||+|||||++|+++|..|++. +.+|+|||+++.+++.+...... ..+ ...++.....+.+.+ ++++
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (335)
T 2zbw_A 5 HTDVLIVGAGPTGLFAGFYVGMR--GLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVY 82 (335)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEE
T ss_pred cCcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 47999999999999999999997 89999999988765433211000 001 111222223333444 7887
Q ss_pred E-cceEEEEeCcc--cEEEeccCcEEEecEEEEecCC---CCCCCCCC-Cceee---e-eccchHHHHHHHhhcCCeEEE
Q psy1545 72 I-VDTVAAIDPRV--NCVITEKQNRIKYKTLCICTGA---SPRKIWYS-PHVIT---I-RDTDSVAVLQEKLKSAKKIVV 140 (454)
Q Consensus 72 ~-~~~v~~i~~~~--~~v~~~~g~~i~~d~lviAtG~---~p~~~~~~-~~~~~---~-~~~~~~~~l~~~~~~~~~vvV 140 (454)
+ ..+|..++.+. ..|.+.++..+.||+||+|||+ .|..|+++ ...+. + ....+...+ .+++++|
T Consensus 83 ~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~~~~~~~~-----~~~~v~v 157 (335)
T 2zbw_A 83 SLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVKSKAEF-----QGKRVLI 157 (335)
T ss_dssp EESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESSCSCGGGG-----TTCEEEE
T ss_pred EeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEecCchhhc-----CCCEEEE
Confidence 5 45888887654 3566667778999999999999 46666665 11110 1 112222211 3899999
Q ss_pred EcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccc
Q psy1545 141 IGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHT 218 (454)
Q Consensus 141 vG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (454)
||+|.+|+|+|..|. +.+|++++|++++.+ .++..+.+.+.+
T Consensus 158 iG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~---~~~~~~~l~~~l--------------------------------- 201 (335)
T 2zbw_A 158 VGGGDSAVDWALNLLDTARRITLIHRRPQFRA---HEASVKELMKAH--------------------------------- 201 (335)
T ss_dssp ECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS---CHHHHHHHHHHH---------------------------------
T ss_pred ECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc---cHHHHHHHHhcc---------------------------------
Confidence 999999999999997 889999999887654 223333343333
Q ss_pred ccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec---CC--cEEecCEEEEeeccCcCcccccCCCCceecCCCc
Q psy1545 219 QVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---NG--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCG 293 (454)
Q Consensus 219 ~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~ 293 (454)
++.||++++++.+.+++.++ ....+.++ +| +++++|.|++|+|++|+.+ +++..+++++ +|+
T Consensus 202 --------~~~gv~v~~~~~v~~i~~~~---~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~-~l~~~~~~~~-~g~ 268 (335)
T 2zbw_A 202 --------EEGRLEVLTPYELRRVEGDE---RVRWAVVFHNQTQEELALEVDAVLILAGYITKLG-PLANWGLALE-KNK 268 (335)
T ss_dssp --------HTTSSEEETTEEEEEEEESS---SEEEEEEEETTTCCEEEEECSEEEECCCEEEECG-GGGGSCCCEE-TTE
T ss_pred --------ccCCeEEecCCcceeEccCC---CeeEEEEEECCCCceEEEecCEEEEeecCCCCch-Hhhhcceecc-CCe
Confidence 34799999999999998753 23356665 67 6799999999999999998 8888888876 789
Q ss_pred eEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC
Q psy1545 294 IGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351 (454)
Q Consensus 294 i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 351 (454)
|.||+++||+.|+|||+|||+..+. .+++++.|..||+.||+||.+.+.+.
T Consensus 269 i~vd~~~~t~~~~vya~GD~~~~~~-------~~~~~~~A~~~g~~aa~~i~~~l~~~ 319 (335)
T 2zbw_A 269 IKVDTTMATSIPGVYACGDIVTYPG-------KLPLIVLGFGEAAIAANHAAAYANPA 319 (335)
T ss_dssp EECCTTCBCSSTTEEECSTTEECTT-------CCCCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred eeeCCCCCCCCCCEEEeccccccCc-------chhhhhhhHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999997531 13678899999999999999876554
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=286.77 Aligned_cols=285 Identities=19% Similarity=0.231 Sum_probs=205.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-----cccchhhhHHHHHhc-CcEEEcc-
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-----SDITVEETDANKFEG-LCTVIVD- 74 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~i~~~~~- 74 (454)
++||+|||||++|+++|..|++. +.+|+|||+.. .+.+.......... ....+.....+.+.+ +++++.+
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~--g~~v~li~~~~-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 77 (310)
T 1fl2_A 1 AYDVLIVGSGPAGAAAAIYSARK--GIRTGLMGERF-GGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQ 77 (310)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTT--TCCEEEECSST-TGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC-CceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccC
Confidence 47999999999999999999998 89999998642 22222111111100 011222223334445 8999887
Q ss_pred eEEEEeCc-----ccEEEeccCcEEEecEEEEecCCCCCCCCCC-CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHH
Q psy1545 75 TVAAIDPR-----VNCVITEKQNRIKYKTLCICTGASPRKIWYS-PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIAT 148 (454)
Q Consensus 75 ~v~~i~~~-----~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~ 148 (454)
+|+.++++ ...|.+++|+.+.||+||+|||++|..|+++ ...+.......+..+......+++++|||+|.+|+
T Consensus 78 ~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~ 157 (310)
T 1fl2_A 78 SASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGV 157 (310)
T ss_dssp CEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHH
T ss_pred EEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhcccceeEEeccCcHhhcCCCEEEEECCCHHHH
Confidence 99999764 3467777788999999999999998877776 11110001111222223344689999999999999
Q ss_pred HHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCc
Q psy1545 149 ELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSS 226 (454)
Q Consensus 149 e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 226 (454)
|+|..|. +.+|+++++.+++. .+ ..+.+.+.
T Consensus 158 e~A~~l~~~g~~Vtlv~~~~~~~---~~----~~~~~~l~---------------------------------------- 190 (310)
T 1fl2_A 158 EAAIDLAGIVEHVTLLEFAPEMK---AD----QVLQDKLR---------------------------------------- 190 (310)
T ss_dssp HHHHHHHTTBSEEEEECSSSSCC---SC----HHHHHHHH----------------------------------------
T ss_pred HHHHHHHHhCCEEEEEEeCcccC---cc----HHHHHHHh----------------------------------------
Confidence 9999986 89999999987652 12 22333332
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecC---C--cEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccc
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTN---G--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQ 301 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~---g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~ 301 (454)
+..||++++++.++++..+++ ....+++.+ | .++++|.|++|+|++|+.+ ++... +.++++|+|.||+++|
T Consensus 191 ~~~gv~v~~~~~v~~i~~~~~--~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~-~l~~~-l~~~~~g~i~vd~~~~ 266 (310)
T 1fl2_A 191 SLKNVDIILNAQTTEVKGDGS--KVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTN-WLEGA-VERNRMGEIIIDAKCE 266 (310)
T ss_dssp TCTTEEEESSEEEEEEEESSS--SEEEEEEEETTTCCEEEEECSEEEECSCEEESCG-GGTTT-SCBCTTSCBCCCTTCB
T ss_pred hCCCeEEecCCceEEEEcCCC--cEEEEEEEECCCCcEEEEEcCEEEEeeCCccCch-HHhcc-ccccCCCcEEcCCCCc
Confidence 126999999999999987542 233456643 5 3789999999999999998 77654 7778889999999999
Q ss_pred cccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 302 TSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 302 t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
|+.|+|||+|||+..+ .+.+..|+.||+.||.||...+.
T Consensus 267 t~~~~vya~GD~~~~~---------~~~~~~A~~~g~~aa~~i~~~l~ 305 (310)
T 1fl2_A 267 TNVKGVFAAGDCTTVP---------YKQIIIATGEGAKASLSAFDYLI 305 (310)
T ss_dssp CSSTTEEECSTTBSCS---------SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeecccCCc---------chhhhhhHhhHHHHHHHHHHHHH
Confidence 9999999999999854 24678899999999999987553
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=290.37 Aligned_cols=280 Identities=15% Similarity=0.219 Sum_probs=211.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccc--cccc----cccc---ccchhhhHHHHHhc-CcEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKT--VPVT----KLLS---DITVEETDANKFEG-LCTVI 72 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~--~~~~----~~~~---~~~~~~~~~~~~~~-~i~~~ 72 (454)
+||+|||||+||+++|..|++. +.+|+|||+++.+++.+.. +... .... ..++.....+.+.+ +++++
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (332)
T 3lzw_A 8 YDITIIGGGPVGLFTAFYGGMR--QASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTIC 85 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEE
T ss_pred ceEEEECCCHHHHHHHHHHHHC--CCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEE
Confidence 6999999999999999999998 8999999999877654421 1100 0011 11222223333444 89987
Q ss_pred -cceEEEEeCccc---EEEeccCcEEEecEEEEecCC---CCCCCCCC--Cc----eeeeeccchHHHHHHHhhcCCeEE
Q psy1545 73 -VDTVAAIDPRVN---CVITEKQNRIKYKTLCICTGA---SPRKIWYS--PH----VITIRDTDSVAVLQEKLKSAKKIV 139 (454)
Q Consensus 73 -~~~v~~i~~~~~---~v~~~~g~~i~~d~lviAtG~---~p~~~~~~--~~----~~~~~~~~~~~~l~~~~~~~~~vv 139 (454)
..+|+.++.... .|.+.+++ +.||+||+|||+ .|+.|+++ .. .... ...+...+ ++++++
T Consensus 86 ~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~-~~~~~~~~-----~~~~v~ 158 (332)
T 3lzw_A 86 LEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY-FVDDLQKF-----AGRRVA 158 (332)
T ss_dssp CSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES-SCSCGGGG-----BTCEEE
T ss_pred ccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE-ecCCHHHc-----CCCEEE
Confidence 469999987765 67776665 999999999999 78877776 11 1111 23333322 389999
Q ss_pred EEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccc
Q psy1545 140 VIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWH 217 (454)
Q Consensus 140 VvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 217 (454)
|||+|.+|+|+|..+. +.+|+++++++++.+. ....+.+
T Consensus 159 vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~-------~~~~~~l-------------------------------- 199 (332)
T 3lzw_A 159 ILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAH-------EHSVENL-------------------------------- 199 (332)
T ss_dssp EECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSC-------HHHHHHH--------------------------------
T ss_pred EECCCHhHHHHHHHHHhhCCeEEEEEecCcCCcc-------HHHHHHH--------------------------------
Confidence 9999999999999997 8899999998876431 1112233
Q ss_pred cccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC-----CcEEecCEEEEeeccCcCcccccCCCCceecCCC
Q psy1545 218 TQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN-----GHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDC 292 (454)
Q Consensus 218 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~-----g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g 292 (454)
++.||++++++.+.++..+++ ...+.+++ ++++++|.|++|+|++|+.+ +++..++.+ ++|
T Consensus 200 ---------~~~gv~~~~~~~v~~i~~~~~---~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~-~~~~~~~~~-~~g 265 (332)
T 3lzw_A 200 ---------HASKVNVLTPFVPAELIGEDK---IEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLG-PIKNWGLDI-EKN 265 (332)
T ss_dssp ---------HHSSCEEETTEEEEEEECSSS---CCEEEEEETTSCCEEEEECSEEEECCCEECCCG-GGGGSSCCE-ETT
T ss_pred ---------hcCCeEEEeCceeeEEecCCc---eEEEEEEecCCCceEEEECCEEEEeeccCCCch-HHhhcCccc-cCC
Confidence 338999999999999988653 45566665 36799999999999999998 888888887 689
Q ss_pred ceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC
Q psy1545 293 GIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351 (454)
Q Consensus 293 ~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 351 (454)
+|.||+++||+.|+|||+|||+..+. .++++..|..||+.||.||...+.++
T Consensus 266 ~i~vd~~~~t~~~~vya~GD~~~~~~-------~~~~~~~A~~~g~~aa~~i~~~l~~~ 317 (332)
T 3lzw_A 266 SIVVKSTMETNIEGFFAAGDICTYEG-------KVNLIASGFGEAPTAVNNAKAYMDPK 317 (332)
T ss_dssp EEECCTTSBCSSTTEEECGGGEECTT-------CCCCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred eEEeCCCCceecCCEEEccceecCCC-------CcceEeeehhhHHHHHHHHHHhhChh
Confidence 99999999999999999999996421 24688999999999999999876554
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-36 Score=287.18 Aligned_cols=284 Identities=18% Similarity=0.156 Sum_probs=206.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc------cccccccccccchhhhHHHHHhc-CcEEEcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK------TVPVTKLLSDITVEETDANKFEG-LCTVIVD 74 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~ 74 (454)
++||+|||||++|+++|..|++. +.+|+|||+....+.+.. ++.++.......+.....+.+.+ +++++.+
T Consensus 14 ~~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~ 91 (335)
T 2a87_A 14 VRDVIVIGSGPAGYTAALYAARA--QLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRME 91 (335)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHT--TCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECC
T ss_pred cCCEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEe
Confidence 47999999999999999999998 899999998644332211 11111111111222222333444 8999888
Q ss_pred eEEEEeCc-ccEE-EeccCcEEEecEEEEecCCCCCCCCCC-Cce---eeeeccchHHHHHHHhhcCCeEEEEcCchhHH
Q psy1545 75 TVAAIDPR-VNCV-ITEKQNRIKYKTLCICTGASPRKIWYS-PHV---ITIRDTDSVAVLQEKLKSAKKIVVIGNGGIAT 148 (454)
Q Consensus 75 ~v~~i~~~-~~~v-~~~~g~~i~~d~lviAtG~~p~~~~~~-~~~---~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~ 148 (454)
++..++.. ...| .+.+++.+.||+||+|||++|+.|+++ ... ..+++.. .....+..+++++|||+|.+|+
T Consensus 92 ~v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~---~~~~~~~~~~~v~ViG~G~~g~ 168 (335)
T 2a87_A 92 DVESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQELLGRGVSSCA---TCDGFFFRDQDIAVIGGGDSAM 168 (335)
T ss_dssp CEEEEECSSSSEEEEETTSCEEEEEEEEECCCEEECCCCCTHHHHTBTTTEESCH---HHHGGGGTTCEEEEECSSHHHH
T ss_pred eEEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCccCCCCCchHhccCCceEEee---ccchhhcCCCEEEEECCCHHHH
Confidence 88888862 2356 677788999999999999999888877 111 1122211 2222234589999999999999
Q ss_pred HHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCc
Q psy1545 149 ELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSS 226 (454)
Q Consensus 149 e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 226 (454)
|+|..|. +.+|++++|++++.. .+.+.+.+ +
T Consensus 169 e~a~~l~~~g~~V~l~~~~~~~~~-------~~~~~~~~----------------------------------------~ 201 (335)
T 2a87_A 169 EEATFLTRFARSVTLVHRRDEFRA-------SKIMLDRA----------------------------------------R 201 (335)
T ss_dssp HHHHHHTTTCSEEEEECSSSSCSS-------CTTHHHHH----------------------------------------H
T ss_pred HHHHHHHHhCCeEEEEEcCCcCCc-------cHHHHHHH----------------------------------------h
Confidence 9999997 899999999876532 12222222 1
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEec---CC--cEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccc-c
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLT---NG--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNEL-M 300 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~-~ 300 (454)
++.||++++++.+.++..++. ...+.++ +| +++++|.|++|+|++|+.+ ++. .++.++++|+|.||++ +
T Consensus 202 ~~~gV~v~~~~~v~~i~~~~~---~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~-~~~-~~l~~~~~G~i~vd~~~~ 276 (335)
T 2a87_A 202 NNDKIRFLTNHTVVAVDGDTT---VTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSG-LVR-EAIDVDPDGYVLVQGRTT 276 (335)
T ss_dssp HCTTEEEECSEEEEEEECSSS---CCEEEEEEETTSCCEEECCSCEEECSCEEECCT-TTB-TTBCBCTTSCBCCSTTSS
T ss_pred ccCCcEEEeCceeEEEecCCc---EeEEEEEEcCCCceEEeecCEEEEccCCccChh-Hhh-cccccCCCccEEeCCCCC
Confidence 238999999999999987652 2334443 44 5799999999999999998 776 4688888899999986 6
Q ss_pred ccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC
Q psy1545 301 QTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351 (454)
Q Consensus 301 ~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 351 (454)
+|+.|+|||+|||+..+ ++.+..|..||+.||.||...+.++
T Consensus 277 ~t~~~~iya~GD~~~~~---------~~~~~~A~~~g~~aA~~i~~~l~~~ 318 (335)
T 2a87_A 277 STSLPGVFAAGDLVDRT---------YRQAVTAAGSGCAAAIDAERWLAEH 318 (335)
T ss_dssp BCSSTTEEECGGGTCCS---------CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEeeecCCcc---------HHHHHHHHHhHHHHHHHHHHHhhcC
Confidence 89999999999999753 3567889999999999998766443
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=289.25 Aligned_cols=289 Identities=19% Similarity=0.161 Sum_probs=206.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECC----CCcccccccc-------ccccccccccchhhhHHHHHhc-Cc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTP----SGIVKAVTKT-------VPVTKLLSDITVEETDANKFEG-LC 69 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~----~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~i 69 (454)
++||+|||||++|+++|..|++. +.+|+|+|+ ....++.+.. +.++......++.....+.+.+ ++
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv 85 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARA--ELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGT 85 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEECcCHHHHHHHHHHHHC--CCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCC
Confidence 37999999999999999999998 899999998 3333222211 1111111111222223333444 89
Q ss_pred EEEcceEEEEeCccc--EEEeccCcEEEecEEEEecCCCCCCCCCC--Cc---eeeeeccchHHHHHHHh--hcCCeEEE
Q psy1545 70 TVIVDTVAAIDPRVN--CVITEKQNRIKYKTLCICTGASPRKIWYS--PH---VITIRDTDSVAVLQEKL--KSAKKIVV 140 (454)
Q Consensus 70 ~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lviAtG~~p~~~~~~--~~---~~~~~~~~~~~~l~~~~--~~~~~vvV 140 (454)
+++.+++..++.... .|.+ ++..++||+||+|||++|..|+++ .. .+..........+...+ ..+++++|
T Consensus 86 ~~~~~~v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V 164 (333)
T 1vdc_A 86 TIFTETVTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAV 164 (333)
T ss_dssp EEECCCCCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECCCCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEE
T ss_pred EEEEeEEEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCCCCCCCccccccccccCcEEEeccCccchhhcCCCeEEE
Confidence 998888888887654 5666 677899999999999998888776 11 12111111122222222 45899999
Q ss_pred EcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccc
Q psy1545 141 IGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHT 218 (454)
Q Consensus 141 vG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (454)
||+|.+|+|+|..|. +.+|+++++++.+.. ...+.+.+
T Consensus 165 vG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~-------~~~~~~~~--------------------------------- 204 (333)
T 1vdc_A 165 IGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA-------SKIMQQRA--------------------------------- 204 (333)
T ss_dssp ECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------CHHHHHHH---------------------------------
T ss_pred ECCChHHHHHHHHHHhcCCeEEEEecCCcCCc-------cHHHHHHH---------------------------------
Confidence 999999999999997 899999999876532 12222221
Q ss_pred ccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec---CC--cEEecCEEEEeeccCcCcccccCCCCceecCCCc
Q psy1545 219 QVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---NG--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCG 293 (454)
Q Consensus 219 ~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~ 293 (454)
+++.||++++++.+.++..+++......+.++ +| +++++|.|++|+|++|+.+ +++ .++.++++|+
T Consensus 205 -------~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~-~~~-~~l~~~~~G~ 275 (333)
T 1vdc_A 205 -------LSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATK-FLD-GGVELDSDGY 275 (333)
T ss_dssp -------HTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCG-GGT-TSSCBCTTSC
T ss_pred -------HhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchH-Hhh-ccccccCCCC
Confidence 13489999999999999875420023335554 45 5799999999999999998 776 4678888899
Q ss_pred eEeccc-cccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC
Q psy1545 294 IGVNEL-MQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351 (454)
Q Consensus 294 i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 351 (454)
|.||++ ++|+.|+|||+|||+..+ ++.+..|..||+.||.+|...+.++
T Consensus 276 i~vd~~~~~t~~~~vya~GD~~~~~---------~~~~~~A~~~g~~aa~~i~~~l~~~ 325 (333)
T 1vdc_A 276 VVTKPGTTQTSVPGVFAAGDVQDKK---------YRQAITAAGTGCMAALDAEHYLQEI 325 (333)
T ss_dssp BCCCTTSCBCSSTTEEECGGGGCSS---------CCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEechhhcccCCCCEEEeeeccCCC---------chhHHHHHHhHHHHHHHHHHHHHhc
Confidence 999987 589999999999999753 3578889999999999999766443
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=288.47 Aligned_cols=288 Identities=20% Similarity=0.228 Sum_probs=209.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccc--ccc----cccc---cccchhhhHHHHHhc-CcEE
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKT--VPV----TKLL---SDITVEETDANKFEG-LCTV 71 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~--~~~----~~~~---~~~~~~~~~~~~~~~-~i~~ 71 (454)
++||+|||||++|+++|..|++. +.+|+|||+.+.+++.+.. +.. ...+ ....+.....+.+.+ ++++
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 91 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGMN--NISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDV 91 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEE
Confidence 47999999999999999999997 8999999998776543321 100 0001 111222233334445 8888
Q ss_pred Ec-ceEEEEeCccc---EEEeccCcEEEecEEEEecCCC---CCCCCCCC--ceee---e-eccchHHHHHHHhhcCCeE
Q psy1545 72 IV-DTVAAIDPRVN---CVITEKQNRIKYKTLCICTGAS---PRKIWYSP--HVIT---I-RDTDSVAVLQEKLKSAKKI 138 (454)
Q Consensus 72 ~~-~~v~~i~~~~~---~v~~~~g~~i~~d~lviAtG~~---p~~~~~~~--~~~~---~-~~~~~~~~l~~~~~~~~~v 138 (454)
+. .+|+.++.... .|.+.+++.+.||+||+|||+. |..++++. ..+. + ....+...+ .++++
T Consensus 92 ~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~~~~~~~~-----~~~~v 166 (360)
T 3ab1_A 92 VLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVEDF-----KGKRV 166 (360)
T ss_dssp ECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESSCSCGGGG-----TTCEE
T ss_pred EcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEecCCHHHc-----CCCcE
Confidence 64 48999886543 6777778899999999999994 54444332 0010 1 111222211 38999
Q ss_pred EEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcc
Q psy1545 139 VVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDW 216 (454)
Q Consensus 139 vVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (454)
+|||+|.+|+|+|..|. +.+|+++++++.+.+ .++..+.+.+.+
T Consensus 167 vVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~~~~~l~~~~------------------------------- 212 (360)
T 3ab1_A 167 VIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG---HGKTAHEVERAR------------------------------- 212 (360)
T ss_dssp EEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS---CSHHHHSSHHHH-------------------------------
T ss_pred EEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC---CHHHHHHHHHHh-------------------------------
Confidence 99999999999999997 899999999887654 233333333333
Q ss_pred ccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec--CC--cEEecCEEEEeeccCcCcccccCCCCceecCCC
Q psy1545 217 HTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT--NG--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDC 292 (454)
Q Consensus 217 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~--~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g 292 (454)
++.||++++++.+.++..+++ ....+.+. +| +++++|.|++|+|++|+.+ +++..++.++ +|
T Consensus 213 ----------~~~gv~i~~~~~v~~i~~~~~--~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~-~l~~~~~~~~-~g 278 (360)
T 3ab1_A 213 ----------ANGTIDVYLETEVASIEESNG--VLTRVHLRSSDGSKWTVEADRLLILIGFKSNLG-PLARWDLELY-EN 278 (360)
T ss_dssp ----------HHTSEEEESSEEEEEEEEETT--EEEEEEEEETTCCEEEEECSEEEECCCBCCSCG-GGGGSSCCEE-TT
T ss_pred ----------hcCceEEEcCcCHHHhccCCC--ceEEEEEEecCCCeEEEeCCEEEECCCCCCCHH-HHHhhccccc-cC
Confidence 337999999999999987542 22345553 77 6799999999999999998 8888888876 79
Q ss_pred ceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC
Q psy1545 293 GIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351 (454)
Q Consensus 293 ~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 351 (454)
+|.||+++||+.|+|||+|||+..+. .++++..|..||++||+||.+.+.+.
T Consensus 279 ~i~vd~~~~t~~~~vya~GD~~~~~~-------~~~~~~~A~~~g~~aa~~i~~~l~~~ 330 (360)
T 3ab1_A 279 ALVVDSHMKTSVDGLYAAGDIAYYPG-------KLKIIQTGLSEATMAVRHSLSYIKPG 330 (360)
T ss_dssp EEECCTTSBCSSTTEEECSTTEECTT-------CCCSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred eeeecCCCcCCCCCEEEecCccCCCC-------ccceeehhHHHHHHHHHHHHhhcCCc
Confidence 99999999999999999999997431 14678899999999999999766543
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-36 Score=296.54 Aligned_cols=287 Identities=17% Similarity=0.169 Sum_probs=222.4
Q ss_pred ccEEEECCCHHHHHHHHHHhh-cCCCCeEEEECCCCccccccccccccccc-cccchhhhHHHHHhc-CcEEEcceEEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAF-LHPGESIGLVTPSGIVKAVTKTVPVTKLL-SDITVEETDANKFEG-LCTVIVDTVAAI 79 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~-~~~g~~v~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~i~~~~~~v~~i 79 (454)
+||+|||||++|+++|..|++ ..++.+|+|||+++.+.+....+...... ...++.....+.+.+ +++++.++|+.+
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i 81 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEGTVEKI 81 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEECEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEeeEEEE
Confidence 589999999999999999999 33389999999998765433332221111 122233334445555 999998899999
Q ss_pred eCcccEEEeccCc----EEEecEEEEecCCCCCCCCCC---CceeeeeccchHHHHHHHhhcC-CeEEEEcCch------
Q psy1545 80 DPRVNCVITEKQN----RIKYKTLCICTGASPRKIWYS---PHVITIRDTDSVAVLQEKLKSA-KKIVVIGNGG------ 145 (454)
Q Consensus 80 ~~~~~~v~~~~g~----~i~~d~lviAtG~~p~~~~~~---~~~~~~~~~~~~~~l~~~~~~~-~~vvVvG~G~------ 145 (454)
+++.+.|.+.+++ ++.||+||+|||++|+.|+++ +..+++.+.+++.++.+.+... ++++|||+|.
T Consensus 82 ~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~ 161 (409)
T 3h8l_A 82 DAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHN 161 (409)
T ss_dssp ETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGSBTHHHHCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCS
T ss_pred eCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCCCChhhcCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCC
Confidence 9998888887765 399999999999999888777 3456777888888888766543 6778999992
Q ss_pred -------------------hHHHHHHHh----c--C----CcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhh
Q psy1545 146 -------------------IATELVHEL----S--N----VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETI 196 (454)
Q Consensus 146 -------------------~g~e~a~~l----~--g----~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~ 196 (454)
.++|+|..+ . | .+|+++++.+ +++. ++++..+.+.+.+.+
T Consensus 162 ~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l~~-~~~~~~~~~~~~l~~--------- 230 (409)
T 3h8l_A 162 PKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YLSD-LSPNSRKAVASIYNQ--------- 230 (409)
T ss_dssp SCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SSTT-BCHHHHHHHHHHHHH---------
T ss_pred ccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-cccc-cCHHHHHHHHHHHHH---------
Confidence 477888544 2 5 4899999988 5543 566666666666654
Q ss_pred hhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 197 FKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
.||++++++.|++++.++ +.+++|+++++|.+++++|++|+
T Consensus 231 --------------------------------~gV~~~~~~~v~~i~~~~-------v~~~~g~~~~~D~vi~a~G~~~~ 271 (409)
T 3h8l_A 231 --------------------------------LGIKLVHNFKIKEIREHE-------IVDEKGNTIPADITILLPPYTGN 271 (409)
T ss_dssp --------------------------------HTCEEECSCCEEEECSSE-------EEETTSCEEECSEEEEECCEECC
T ss_pred --------------------------------CCCEEEcCCceEEECCCe-------EEECCCCEEeeeEEEECCCCCcc
Confidence 899999999999997643 78889999999999999999998
Q ss_pred cccccCCCCce-ecCCCceEecccccc-ccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 277 SNIQVHGTPFE-LAPDCGIGVNELMQT-SISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 277 ~~~~~~~~~l~-~~~~g~i~vd~~~~t-~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
. ++...+.. .+++|+|.||+++|| +.|||||+|||+..+ .+++++.|..||++||+||.+.+.
T Consensus 272 ~--~l~~~~~~l~~~~G~i~vd~~~~~~~~~~vfa~GD~~~~~--------~~~~~~~A~~q~~~aa~~i~~~l~ 336 (409)
T 3h8l_A 272 P--ALKNSTPDLVDDGGFIPTDLNMVSIKYDNVYAVGDANSMT--------VPKLGYLAVMTGRIAAQHLANRLG 336 (409)
T ss_dssp H--HHHTSCGGGSCTTSCBCBBTTSBBSSCTTEEECGGGBTTC--------CSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred H--HHHhccccCcCCCCCEEeCcccccCCCCCEEEeehhccCC--------CCcHHHHHHHHHHHHHHHHHHHhc
Confidence 5 66666322 367899999999998 899999999999753 136788999999999999998773
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=280.93 Aligned_cols=310 Identities=15% Similarity=0.132 Sum_probs=197.6
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccc-------------cccc-----ccc----cchh
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVP-------------VTKL-----LSD----ITVE 58 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~-------------~~~~-----~~~----~~~~ 58 (454)
+++||+|||||++|+++|..|++. +.+|+|||+++.+++.+.... ++.. ... ..+.
T Consensus 2 ~~~~vvIIG~G~aGl~~A~~l~~~--g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 4a9w_A 2 DSVDVVVIGGGQSGLSAGYFLRRS--GLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVL 79 (357)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHS--SCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHH
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHH
Confidence 058999999999999999999998 899999999977654433210 0000 000 0111
Q ss_pred hhHHHHHhc-CcEEEcc-eEEEEeCcccE---EEeccCcEEEecEEEEecCC--CCCCCCCC--C----ceeeeeccchH
Q psy1545 59 ETDANKFEG-LCTVIVD-TVAAIDPRVNC---VITEKQNRIKYKTLCICTGA--SPRKIWYS--P----HVITIRDTDSV 125 (454)
Q Consensus 59 ~~~~~~~~~-~i~~~~~-~v~~i~~~~~~---v~~~~g~~i~~d~lviAtG~--~p~~~~~~--~----~~~~~~~~~~~ 125 (454)
....+...+ +++++.+ +|+.++.+... |.++++ ++.||+||+|||. +|+.|+++ . ...+.....+.
T Consensus 80 ~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (357)
T 4a9w_A 80 AYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTP 158 (357)
T ss_dssp HHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCCS
T ss_pred HHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCCh
Confidence 111222233 8888754 89999876654 666666 8999999999995 56667766 1 12222122222
Q ss_pred HHHHHHhhcCCeEEEEcCchhHHHHHHHhc-CCcEEEEEeC-CCccccccC-CcchhhhHHHhhccCCCChhhhhhhccc
Q psy1545 126 AVLQEKLKSAKKIVVIGNGGIATELVHELS-NVDIVWVVKD-KHISATFLD-PGAAEFFQDSINKTNTAKPETIFKRMRY 202 (454)
Q Consensus 126 ~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~-g~~V~~i~~~-~~~~~~~~d-~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 202 (454)
..+ .+++++|||+|.+|+|+|..|. -.+|+++.++ +.+++..++ ..+...+.+.+.+. ....+
T Consensus 159 ~~~-----~~~~v~VvG~G~~g~e~a~~l~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 224 (357)
T 4a9w_A 159 APF-----AGMRVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERATERWKAQ---------QEGRE 224 (357)
T ss_dssp GGG-----TTSEEEEECCSHHHHHHHHHHTTTSEEEEECSSCCCBCCTTCCTHHHHTC----------------------
T ss_pred hhc-----CCCEEEEECCCcCHHHHHHHHHhhCCEEEEECCCCeecchhhcCccHHHHHHHHHhcc---------ccccC
Confidence 211 4799999999999999999997 2369999988 555554222 12222222222110 00000
Q ss_pred ccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccC
Q psy1545 203 NTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVH 282 (454)
Q Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~ 282 (454)
... .........+...+ .+. .+.|+ +..+..+.+++..+ +.+++|+++++|.|++|+|++|+.+ +++
T Consensus 225 ~~~-~~~~~~~~~~~~~~--~~~-~~~g~-i~~~~~v~~~~~~~-------v~~~~g~~i~~D~vi~a~G~~p~~~-~l~ 291 (357)
T 4a9w_A 225 PDL-PPGGFGDIVMVPPV--LDA-RARGV-LAAVPPPARFSPTG-------MQWADGTERAFDAVIWCTGFRPALS-HLK 291 (357)
T ss_dssp ----------CBCCCHHH--HHH-HHTTC-CCEECCCSEEETTE-------EECTTSCEEECSEEEECCCBCCCCG-GGT
T ss_pred CCc-ccccccCcccChhH--HHH-HhcCc-eEEecCcceEeCCe-------eEECCCCEecCCEEEECCCcCCCCc-ccC
Confidence 000 00000000011100 011 12444 45556677776543 7889999999999999999999998 998
Q ss_pred CCCceecCCCceEeccc--cccccCceeecC--cccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCC
Q psy1545 283 GTPFELAPDCGIGVNEL--MQTSISNVYAAG--DVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKN 350 (454)
Q Consensus 283 ~~~l~~~~~g~i~vd~~--~~t~~~~Iya~G--D~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 350 (454)
..++. +++|+|.||++ ++|+.|||||+| ||+... .+....|..||+.+|+||...+.+
T Consensus 292 ~~gl~-~~~G~i~vd~~~l~~t~~~~vya~Gd~d~~~~~---------~~~~~~A~~~g~~~a~~i~~~l~g 353 (357)
T 4a9w_A 292 GLDLV-TPQGQVEVDGSGLRALAVPSVWLLGYGDWNGMA---------SATLIGVTRYAREAVRQVTAYCAD 353 (357)
T ss_dssp TTTCB-CTTSCBCBCTTSCBBSSCTTEEECSSCGGGSTT---------CSSTTTHHHHHHHHHHHHHHHTC-
T ss_pred ccccc-CCCCCccccCCcccCCCCCCeEEeccccccccc---------hhhhhhhHHHHHHHHHHHHHHHHh
Confidence 88888 78899999999 889999999999 555422 245667999999999999987765
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-34 Score=289.33 Aligned_cols=278 Identities=21% Similarity=0.256 Sum_probs=205.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc-----ccccchhhhHHHHHhc-CcEEEcc-
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL-----LSDITVEETDANKFEG-LCTVIVD- 74 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~i~~~~~- 74 (454)
.+||+|||||+||+++|..|++. |.+|+|+|+.. .+.+......... .....+.......+.+ +++++.+
T Consensus 212 ~~dVvIIGgG~AGl~aA~~la~~--G~~v~lie~~~-GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~ 288 (521)
T 1hyu_A 212 AYDVLIVGSGPAGAAAAVYSARK--GIRTGLMGERF-GGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQ 288 (521)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSST-TGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSC
T ss_pred cccEEEECCcHHHHHHHHHHHhC--CCeEEEEECCC-CCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCC
Confidence 47999999999999999999998 89999998742 2221111111100 0111222233344445 9999877
Q ss_pred eEEEEeCc-----ccEEEeccCcEEEecEEEEecCCCCCCCCCC-C------ceeeeeccchHHHHHHHhhcCCeEEEEc
Q psy1545 75 TVAAIDPR-----VNCVITEKQNRIKYKTLCICTGASPRKIWYS-P------HVITIRDTDSVAVLQEKLKSAKKIVVIG 142 (454)
Q Consensus 75 ~v~~i~~~-----~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~-~------~~~~~~~~~~~~~l~~~~~~~~~vvVvG 142 (454)
+|+.++++ ...|.+++|..+.||++|+|||++|+.|+++ . .++.....+ .....+++++|||
T Consensus 289 ~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~~~------~~~~~~k~V~ViG 362 (521)
T 1hyu_A 289 SASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCD------GPLFKGKRVAVIG 362 (521)
T ss_dssp CEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTTCC------GGGGBTSEEEEEC
T ss_pred EEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeecCc------hhhcCCCeEEEEC
Confidence 99999764 3567787888999999999999998887776 1 122111111 1223589999999
Q ss_pred CchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccccc
Q psy1545 143 NGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQV 220 (454)
Q Consensus 143 ~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (454)
+|.+|+|+|..|+ +.+|+++++.+++.. + ..+.+.+.+
T Consensus 363 gG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---~----~~l~~~l~~--------------------------------- 402 (521)
T 1hyu_A 363 GGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---D----QVLQDKVRS--------------------------------- 402 (521)
T ss_dssp CSHHHHHHHHHHHHHBSEEEEECSSSSCCS---C----HHHHHHHTT---------------------------------
T ss_pred CCHHHHHHHHHHHhhCCEEEEEEeCcccCc---C----HHHHHHHhc---------------------------------
Confidence 9999999999987 899999999887643 1 233333321
Q ss_pred ccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC---C--cEEecCEEEEeeccCcCcccccCCCCceecCCCceE
Q psy1545 221 NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN---G--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIG 295 (454)
Q Consensus 221 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~---g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~ 295 (454)
..||++++++.++++..+++ ....+.+.+ | .++++|.|++++|++|+++ ++.. .+.++++|+|.
T Consensus 403 -------~~gV~v~~~~~v~~i~~~~~--~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~-~l~~-~l~~~~~G~I~ 471 (521)
T 1hyu_A 403 -------LKNVDIILNAQTTEVKGDGS--KVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTH-WLEG-ALERNRMGEII 471 (521)
T ss_dssp -------CTTEEEECSEEEEEEEECSS--SEEEEEEEETTTCCEEEEECSEEEECCCEEESCG-GGTT-TSCBCTTSCBC
T ss_pred -------CCCcEEEeCCEEEEEEcCCC--cEEEEEEEeCCCCceEEEEcCEEEECcCCCCCch-HHhh-hhccCCCCcEE
Confidence 15999999999999987542 233456543 5 3689999999999999998 8776 47788889999
Q ss_pred eccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 296 VNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 296 vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
||+++||+.|+|||+|||+..+ .+.+..|+.||+.||.+|...+
T Consensus 472 Vd~~~~ts~p~VfA~GD~~~~~---------~~~~~~A~~~g~~aa~~i~~~L 515 (521)
T 1hyu_A 472 IDAKCETSVKGVFAAGDCTTVP---------YKQIIIATGEGAKASLSAFDYL 515 (521)
T ss_dssp CCTTCBCSSTTEEECSTTBCCS---------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCCCCCEEEeecccCCC---------cceeeehHHhHHHHHHHHHHHH
Confidence 9999999999999999999854 3567889999999999998644
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-34 Score=277.90 Aligned_cols=287 Identities=14% Similarity=0.113 Sum_probs=192.7
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCCcccccc-ccccc----cc-------cc---------------
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSGIVKAVT-KTVPV----TK-------LL--------------- 52 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~~~~~~~-~~~~~----~~-------~~--------------- 52 (454)
+++||+|||||++|+++|..|++. +. +|+|||+++ .++.+ +++.. .. .+
T Consensus 3 ~~~~vvIIGaG~aGl~aA~~l~~~--g~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 79 (369)
T 3d1c_A 3 QHHKVAIIGAGAAGIGMAITLKDF--GITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFT 79 (369)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHT--TCCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHH
T ss_pred ccCcEEEECcCHHHHHHHHHHHHc--CCCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhcccccccccc
Confidence 148999999999999999999998 77 999999987 33222 11100 00 00
Q ss_pred --ccc---chhhhHHHH-Hhc-CcEEEcc-eEEEEeCc--ccEEEeccCcEEEecEEEEecCCCCCCCCCC-Cceeeeec
Q psy1545 53 --SDI---TVEETDANK-FEG-LCTVIVD-TVAAIDPR--VNCVITEKQNRIKYKTLCICTGASPRKIWYS-PHVITIRD 121 (454)
Q Consensus 53 --~~~---~~~~~~~~~-~~~-~i~~~~~-~v~~i~~~--~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~-~~~~~~~~ 121 (454)
..+ .....+... +.+ +++++.+ +|+.++++ ...|.+.++ .+.||+||+|||+.+. |.+| +...+...
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~-p~ip~~~~~~~~~ 157 (369)
T 3d1c_A 80 FNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF-PKKPFKYGIHYSE 157 (369)
T ss_dssp HCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS-BCCCSSSCEEGGG
T ss_pred ccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc-cCCCCCceechhh
Confidence 000 000111222 233 8998765 78888865 346666555 6999999999999765 3444 23333333
Q ss_pred cchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcc------hhhhHHHhhccCCCCh
Q psy1545 122 TDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGA------AEFFQDSINKTNTAKP 193 (454)
Q Consensus 122 ~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~------~~~~~~~l~~~~~~~~ 193 (454)
..+...+ ++++++|||+|.+|+|+|..|. +.+|+++++++.+++..++++. .+.+.+.+
T Consensus 158 ~~~~~~~-----~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l-------- 224 (369)
T 3d1c_A 158 IEDFDNF-----NKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVI-------- 224 (369)
T ss_dssp CSCGGGS-----CSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHH--------
T ss_pred cCChhhc-----CCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHH--------
Confidence 3222211 3679999999999999999986 9999999999887743334332 23333333
Q ss_pred hhhhhhcccccCCCCCCCCCCccccccccccCccCCc-eEEEeCceEEEEEcCCCCccceEEEecCCcEEe-cCEEEEee
Q psy1545 194 ETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTK-ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHA-CDIVVSAI 271 (454)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~-~D~vi~a~ 271 (454)
++.| |++++++.|.+++..++ ...+.+.+|+++. +|.|++|+
T Consensus 225 ---------------------------------~~~g~v~~~~~~~v~~i~~~~~---~~~v~~~~g~~~~~~d~vi~a~ 268 (369)
T 3d1c_A 225 ---------------------------------KQGARIEMNVHYTVKDIDFNNG---QYHISFDSGQSVHTPHEPILAT 268 (369)
T ss_dssp ---------------------------------HTTCCEEEECSCCEEEEEEETT---EEEEEESSSCCEEESSCCEECC
T ss_pred ---------------------------------hhCCcEEEecCcEEEEEEecCC---ceEEEecCCeEeccCCceEEee
Confidence 3476 99999999999975432 4567888887665 69999999
Q ss_pred ccCcCcccccCCCCceecCCCceEeccc-cccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 272 GVVPNSNIQVHGTPFELAPDCGIGVNEL-MQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 272 G~~p~~~~~~~~~~l~~~~~g~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
|++|+.+ ++...+++ +++|++.||++ ++|+.|+|||+|||+..+... ...++.+.+||+++|++|.+...
T Consensus 269 G~~~~~~-~~~~~~~~-~~~g~i~v~~~~~~t~~~~v~a~GD~~~~~~~~------~~~~~~~~~~a~~~a~~l~~~~~ 339 (369)
T 3d1c_A 269 GFDATKN-PIVQQLFV-TTNQDIKLTTHDESTRYPNIFMIGATVENDNAK------LCYIYKFRARFAVLAHLLTQREG 339 (369)
T ss_dssp CBCGGGS-HHHHHHSC-CTTSCCCBCTTSBBSSSTTEEECSTTCCCSSCC------CCSHHHHGGGHHHHHHHHHHHTT
T ss_pred ccCCccc-hhhhhhcc-CCCCCEEechhhcccCCCCeEEeccccccCCee------EEEEehhhHHHHHHHHHHhcccC
Confidence 9999996 55444455 67888999976 669999999999998754221 12345688899999999988654
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=274.82 Aligned_cols=266 Identities=12% Similarity=0.098 Sum_probs=190.4
Q ss_pred CcccEEEECCCHHHHHHHHHHhh---cCCCCe---EEEECCCCcccccccccccc----------------------c--
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAF---LHPGES---IGLVTPSGIVKAVTKTVPVT----------------------K-- 50 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~---~~~g~~---v~lie~~~~~~~~~~~~~~~----------------------~-- 50 (454)
|.+||+|||||++|++||..|++ . |.+ |+|||+++..++.+.+.... .
T Consensus 1 M~~~V~IIGaG~aGl~aA~~L~~~~~~--G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~ 78 (464)
T 2xve_A 1 MATRIAILGAGPSGMAQLRAFQSAQEK--GAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKEC 78 (464)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHHHT--TCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGG
T ss_pred CCCcEEEECccHHHHHHHHHHHhhhhc--CCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhh
Confidence 77899999999999999999999 7 888 99999998766555431100 0
Q ss_pred -cccccch-------------hhh---HHHHH-hc-CcE--EE-cceEEEEeCccc----EEEecc---C--cEEEecEE
Q psy1545 51 -LLSDITV-------------EET---DANKF-EG-LCT--VI-VDTVAAIDPRVN----CVITEK---Q--NRIKYKTL 99 (454)
Q Consensus 51 -~~~~~~~-------------~~~---~~~~~-~~-~i~--~~-~~~v~~i~~~~~----~v~~~~---g--~~i~~d~l 99 (454)
.+..+.+ ... ++..+ .+ +++ +. ..+|+.++.... .|++.+ | .++.||+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~V 158 (464)
T 2xve_A 79 LEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYV 158 (464)
T ss_dssp TCBTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEE
T ss_pred cccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEE
Confidence 0001100 011 12222 22 665 54 568888876543 666654 3 57899999
Q ss_pred EEecC--CCCCCCCCC--C----ceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc
Q psy1545 100 CICTG--ASPRKIWYS--P----HVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS 169 (454)
Q Consensus 100 viAtG--~~p~~~~~~--~----~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~ 169 (454)
|+||| +.|+.|+++ + .+.+.....+... ..+++++|||+|.+|+|+|..|+ +.+|+++++++.++
T Consensus 159 VvAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~-----~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~ 233 (464)
T 2xve_A 159 VCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALE-----FKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPM 233 (464)
T ss_dssp EECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGG-----GTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCC
T ss_pred EECCCCCCCCccCCCCCcccCCceEEehhhhCCHhH-----cCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCC
Confidence 99999 789888876 1 1233223333222 14899999999999999999997 99999999887654
Q ss_pred ccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCc
Q psy1545 170 ATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDT 249 (454)
Q Consensus 170 ~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~ 249 (454)
+.. + ..||+++ ..|++++.+
T Consensus 234 ~~~------------~------------------------------------------~~~V~~~--~~V~~i~~~---- 253 (464)
T 2xve_A 234 GYK------------W------------------------------------------PENWDER--PNLVRVDTE---- 253 (464)
T ss_dssp CCC------------C------------------------------------------CTTEEEC--SCEEEECSS----
T ss_pred CCC------------C------------------------------------------CCceEEc--CCeEEEeCC----
Confidence 320 0 1577776 678888643
Q ss_pred cceEEEecCCcEEecCEEEEeeccCcCcccccCC-CCceecCCCceEeccc---cccccCceeecCcccccCCccccchh
Q psy1545 250 CNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHG-TPFELAPDCGIGVNEL---MQTSISNVYAAGDVCTPSWDLAKQWF 325 (454)
Q Consensus 250 ~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~-~~l~~~~~g~i~vd~~---~~t~~~~Iya~GD~~~~~~~~~~~~~ 325 (454)
.|.+.+|+++++|.||+|||++|+.+ ++.. .++.+++++.+ ++.+ ++|+.|+|||+|||+..
T Consensus 254 ---~V~~~dG~~i~~D~Vi~atG~~p~~~-~l~~~~gl~~~~~~~v-~~~~~~~~~t~~p~i~aiGd~~~~--------- 319 (464)
T 2xve_A 254 ---NAYFADGSSEKVDAIILCTGYIHHFP-FLNDDLRLVTNNRLWP-LNLYKGVVWEDNPKFFYIGMQDQW--------- 319 (464)
T ss_dssp ---EEEETTSCEEECSEEEECCCBCCCCT-TBCTTTCCCCCSSSCC-SSEETTTEESSSTTEEECSCSCCS---------
T ss_pred ---EEEECCCCEEeCCEEEECCCCCCCCC-CcCcccccccCCCccc-ccccceEecCCCCCEEEEeCcccc---------
Confidence 37788999999999999999999998 8875 57777655555 4544 56999999999998763
Q ss_pred hccChHHHHHHHHHHHhhhcCCCC
Q psy1545 326 QMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 326 ~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
..++.|..||+++|+++.+...
T Consensus 320 --~~~~~a~~qa~~~a~~l~G~~~ 341 (464)
T 2xve_A 320 --YSFNMFDAQAWYARDVIMGRLP 341 (464)
T ss_dssp --SCHHHHHHHHHHHHHHHTTSSC
T ss_pred --cchHHHHHHHHHHHHHHcCCCC
Confidence 3567899999999999998653
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=281.82 Aligned_cols=282 Identities=16% Similarity=0.158 Sum_probs=194.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
+||+|||||+||+++|..|++. |++|+|||+.+.+++.+.+. .+......++.....+.+.+ +++++.+....
T Consensus 123 ~~V~IIGgGpAGl~aA~~L~~~--G~~V~v~e~~~~~GG~l~~g-ip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~--- 196 (456)
T 2vdc_G 123 LSVGVIGAGPAGLAAAEELRAK--GYEVHVYDRYDRMGGLLVYG-IPGFKLEKSVVERRVKLLADAGVIYHPNFEVG--- 196 (456)
T ss_dssp CCEEEECCSHHHHHHHHHHHHH--TCCEEEECSSSSCSTHHHHT-SCTTTSCHHHHHHHHHHHHHTTCEEETTCCBT---
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCCCCeeeec-CCCccCCHHHHHHHHHHHHHCCcEEEeCCEec---
Confidence 6899999999999999999998 89999999998776654431 11111112233334445555 99988764321
Q ss_pred cccEEEeccCcEEEecEEEEecCCC-CCCCCCC-CceeeeeccchHHHHHH---------------HhhcCCeEEEEcCc
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGAS-PRKIWYS-PHVITIRDTDSVAVLQE---------------KLKSAKKIVVIGNG 144 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~-p~~~~~~-~~~~~~~~~~~~~~l~~---------------~~~~~~~vvVvG~G 144 (454)
+.++++++ .+.||+||||||+. |+.++++ .....+.+..++..... ....+++++|||||
T Consensus 197 --~~v~~~~~-~~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG 273 (456)
T 2vdc_G 197 --RDASLPEL-RRKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGG 273 (456)
T ss_dssp --TTBCHHHH-HSSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSS
T ss_pred --cEEEhhHh-HhhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCC
Confidence 22334333 36799999999996 6777776 22112223222222111 01247899999999
Q ss_pred hhHHHHHHHhc--CC-cEEEEEeCCCc-cccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccccc
Q psy1545 145 GIATELVHELS--NV-DIVWVVKDKHI-SATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQV 220 (454)
Q Consensus 145 ~~g~e~a~~l~--g~-~V~~i~~~~~~-~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (454)
.+|+|+|..+. |+ +|++++|++.. ++. .. .. ...+
T Consensus 274 ~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~----~~-~e-~~~~----------------------------------- 312 (456)
T 2vdc_G 274 DTAMDCVRTAIRQGATSVKCLYRRDRKNMPG----SQ-RE-VAHA----------------------------------- 312 (456)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECSSCSTTCSS----CH-HH-HHHH-----------------------------------
T ss_pred hhHHHHHHHHHHcCCCEEEEEEeCCccCCCC----CH-HH-HHHH-----------------------------------
Confidence 99999998775 77 59999998765 332 11 11 1223
Q ss_pred ccccCccCCceEEEeCceEEEEEcCCCCccceEEE---e----c---------CC--cEEecCEEEEeeccCcCccc-cc
Q psy1545 221 NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVK---L----T---------NG--HTHACDIVVSAIGVVPNSNI-QV 281 (454)
Q Consensus 221 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~---~----~---------~g--~~~~~D~vi~a~G~~p~~~~-~~ 281 (454)
++.||++++++.+.++..++. ...+.+. + . +| .++++|.||+|+|++|+... ++
T Consensus 313 ------~~~Gv~~~~~~~~~~i~~~g~-v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l 385 (456)
T 2vdc_G 313 ------EEEGVEFIWQAAPEGFTGDTV-VTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAF 385 (456)
T ss_dssp ------HHTTCEEECCSSSCCEEEEEE-EETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHH
T ss_pred ------HHCCCEEEeCCCceEEeCCCc-EEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhc
Confidence 237999999988888765321 0011221 1 1 23 47999999999999998752 56
Q ss_pred CCCCceecCCCceEeccc-cccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC
Q psy1545 282 HGTPFELAPDCGIGVNEL-MQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351 (454)
Q Consensus 282 ~~~~l~~~~~g~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 351 (454)
+..+++++++|+|.||++ +||+.|+|||+|||+..+ .++..|+.||+.||.+|.+.+.++
T Consensus 386 ~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~----------~~v~~A~~~G~~aA~~i~~~L~~~ 446 (456)
T 2vdc_G 386 DEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGA----------SLVVWAIRDGRDAAEGIHAYAKAK 446 (456)
T ss_dssp HSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSC----------CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCc----------hHHHHHHHHHHHHHHHHHHHhhcC
Confidence 777888888999999997 999999999999998753 578899999999999998766543
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=275.60 Aligned_cols=317 Identities=15% Similarity=0.161 Sum_probs=195.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEe
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAID 80 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~ 80 (454)
.+||+|||||++|+++|..|++.+++.+|+|||+++.+++.+.+...+......++.....+.+.+ +++++.+...
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v--- 82 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEV--- 82 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCB---
T ss_pred CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEE---
Confidence 368999999999999999999985559999999998776554432211111112233333444555 8988765322
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCC-CCCCCC-CceeeeeccchHHHHHHH------h---hcCCeEEEEcCchhHHH
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASP-RKIWYS-PHVITIRDTDSVAVLQEK------L---KSAKKIVVIGNGGIATE 149 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p-~~~~~~-~~~~~~~~~~~~~~l~~~------~---~~~~~vvVvG~G~~g~e 149 (454)
.+.|.+++ ..+.||+||+|||+.| +.|+++ .+...+.+..++..+.+. + ..+++++|||+|++|+|
T Consensus 83 --~~~V~~~~-~~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e 159 (460)
T 1cjc_A 83 --GRDVTVQE-LQDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALD 159 (460)
T ss_dssp --TTTBCHHH-HHHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHH
T ss_pred --eeEEEecc-ceEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHH
Confidence 12354443 3478999999999995 777777 221122333333322110 0 14799999999999999
Q ss_pred HHHHhc----------------------CC-cEEEEEeCCCccccccCCcchhhhHHHhhcc--CCCChhhhhhhccccc
Q psy1545 150 LVHELS----------------------NV-DIVWVVKDKHISATFLDPGAAEFFQDSINKT--NTAKPETIFKRMRYNT 204 (454)
Q Consensus 150 ~a~~l~----------------------g~-~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~ 204 (454)
+|..|. +. +|+++.|++.+...+..+++.++. .+... ............
T Consensus 160 ~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~--~lp~~~~~~~~~~~~~~~~---- 233 (460)
T 1cjc_A 160 VARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMI--QLPGTRPMLDPADFLGLQD---- 233 (460)
T ss_dssp HHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHH--TCTTEEEECCGGGGTTHHH----
T ss_pred HHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhh--cCCCceeEechhhhcchhh----
Confidence 999875 55 799999988763322111111100 00000 000000000000
Q ss_pred CCCCCCCCCCcccccc-c-cccC--------------ccCCceEEEeCceEEEEEcCCCCc-cceEEEec----------
Q psy1545 205 GGEKGPSLGPDWHTQV-N-LHGS--------------SRDTKITIEYSCEVERIVDSEDDT-CNAYVKLT---------- 257 (454)
Q Consensus 205 ~~~~~~~l~~~~~~~~-~-~~~~--------------l~~~gv~i~~~~~v~~i~~~~~~~-~~~~v~~~---------- 257 (454)
....+ +...+++ . +.+. ....||++++++.+.++..+++ + ....+++.
T Consensus 234 ---~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~-~~~v~~v~~~~~~l~~~~~~ 308 (460)
T 1cjc_A 234 ---RIKEA-ARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPD-GRRAAGIRLAVTRLEGIGEA 308 (460)
T ss_dssp ---HTTTS-CHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTT-SSSEEEEEEEEEEEESSGGG
T ss_pred ---hhhhc-cHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCC-CceEEEEEEEEEEEccccCC
Confidence 00000 0000000 0 0001 1227999999999999986531 1 12233332
Q ss_pred -----CC--cEEecCEEEEeeccCcCcccccCCCCc-eecCCCceEeccccccc-cCceeecCcccccCCccccchhhcc
Q psy1545 258 -----NG--HTHACDIVVSAIGVVPNSNIQVHGTPF-ELAPDCGIGVNELMQTS-ISNVYAAGDVCTPSWDLAKQWFQMR 328 (454)
Q Consensus 258 -----~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l-~~~~~g~i~vd~~~~t~-~~~Iya~GD~~~~~~~~~~~~~~~~ 328 (454)
+| ++++||.|++|+|++|+. + .++ +++++|+|.||+++||+ .|+|||+|||+..+ ..
T Consensus 309 ~~~~~~g~~~~i~~d~Vi~a~G~~p~~--l---~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~---------~~ 374 (460)
T 1cjc_A 309 TRAVPTGDVEDLPCGLVLSSIGYKSRP--I---DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGP---------TG 374 (460)
T ss_dssp CEEEEEEEEEEEECSEEEECCCEECCC--C---CTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCT---------TC
T ss_pred CcccCCCceEEEEcCEEEECCCCCCCC--C---CCCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCC---------Cc
Confidence 34 579999999999999986 4 467 77888999999999998 79999999999643 23
Q ss_pred ChHHHHHHHHHHHhhhcCCCC
Q psy1545 329 LWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 329 ~~~~A~~~g~~aa~~i~~~~~ 349 (454)
.+..|+.+|+.+|.||++.+.
T Consensus 375 ~i~~a~~~g~~aa~~i~~~l~ 395 (460)
T 1cjc_A 375 VITTTMTDSFLTGQILLQDLK 395 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 466899999999999987654
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3e-32 Score=272.39 Aligned_cols=312 Identities=13% Similarity=0.115 Sum_probs=196.4
Q ss_pred CcccEEEECCCHHHHHHHHHHhh-cCC----CCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAF-LHP----GESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD 74 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~-~~~----g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~ 74 (454)
..+||+|||||+||++||..|++ ..+ +.+|+|||+.+.+++.+.+...+......++.....+.+.+ +++++.+
T Consensus 2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~ 81 (456)
T 1lqt_A 2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGN 81 (456)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEES
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEee
Confidence 04799999999999999999998 644 78999999998766554432222211222333333444555 8888765
Q ss_pred eEEEEeCcccEEEeccCcEEEecEEEEecCCC-CCCCCCC-CceeeeeccchHHHHHH-------Hh--hcCCeEEEEcC
Q psy1545 75 TVAAIDPRVNCVITEKQNRIKYKTLCICTGAS-PRKIWYS-PHVITIRDTDSVAVLQE-------KL--KSAKKIVVIGN 143 (454)
Q Consensus 75 ~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~-p~~~~~~-~~~~~~~~~~~~~~l~~-------~~--~~~~~vvVvG~ 143 (454)
. . ++ +.|.++++ .+.||+||+|||+. |+.++++ .....+.+..++....+ .+ ..+++++|||+
T Consensus 82 v-~-v~---~~v~~~~~-~~~~d~lViAtG~~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~ 155 (456)
T 1lqt_A 82 V-V-VG---EHVQPGEL-SERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGN 155 (456)
T ss_dssp C-C-BT---TTBCHHHH-HHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECC
T ss_pred E-E-EC---CEEEECCC-eEeCCEEEEeeCCCCCCCCCCCCCCCCCcEEHHHHHhhhhcCcccccchhhcCCCEEEEECC
Confidence 2 1 22 34555555 47899999999997 6777776 22222333333322111 01 14789999999
Q ss_pred chhHHHHHHHhc----------------------C-CcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhc
Q psy1545 144 GGIATELVHELS----------------------N-VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRM 200 (454)
Q Consensus 144 G~~g~e~a~~l~----------------------g-~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~ 200 (454)
|++|+|+|..|. + .+|+++.|+..+...+..+++.+ +... + ..
T Consensus 156 G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elre-----l~~l--p-------~~ 221 (456)
T 1lqt_A 156 GNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRE-----LADL--D-------GV 221 (456)
T ss_dssp SHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHH-----GGGC--T-------TE
T ss_pred CHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHH-----hhcC--C-------Cc
Confidence 999999999875 2 48999999887655321111100 0000 0 00
Q ss_pred cccc-CCCCCCCCC------Cccccc-c-ccccCccC------CceEEEeCceEEEEEcCCCCccceEEEec--------
Q psy1545 201 RYNT-GGEKGPSLG------PDWHTQ-V-NLHGSSRD------TKITIEYSCEVERIVDSEDDTCNAYVKLT-------- 257 (454)
Q Consensus 201 ~~~~-~~~~~~~l~------~~~~~~-~-~~~~~l~~------~gv~i~~~~~v~~i~~~~~~~~~~~v~~~-------- 257 (454)
.+.. .+.+..... +...++ . .+.+.+++ +||++++++.+.++..++. ...+++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~---v~~v~~~~~~~~~~~ 298 (456)
T 1lqt_A 222 DVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRK---VERIVLGRNELVSDG 298 (456)
T ss_dssp EEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSS---CCEEEEEEEEEEECS
T ss_pred eeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCc---EeEEEEEEEEecCCC
Confidence 0000 000000000 000000 0 00111122 7999999999999987532 2224332
Q ss_pred --------CC--cEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccc-cccCceeecCcccccCCccccchhh
Q psy1545 258 --------NG--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQ-TSISNVYAAGDVCTPSWDLAKQWFQ 326 (454)
Q Consensus 258 --------~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~-t~~~~Iya~GD~~~~~~~~~~~~~~ 326 (454)
+| ++++||.|++|+|++|+. + .++.++++|++.+|+++| |+.|+|||+|||+..+
T Consensus 299 ~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~--l---~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp--------- 364 (456)
T 1lqt_A 299 SGRVAAKDTGEREELPAQLVVRSVGYRGVP--T---PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGP--------- 364 (456)
T ss_dssp SSSEEEEEEEEEEEEECSEEEECSCEECCC--C---TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCS---------
T ss_pred cccccccCCCceEEEEcCEEEEccccccCC--C---CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCC---------
Confidence 34 569999999999999987 3 357778889999999999 8999999999998754
Q ss_pred ccChHHHHHHHHHHHhhhcCCCC
Q psy1545 327 MRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 327 ~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
...+..|+.+|+.+|.+|++.+.
T Consensus 365 ~~~i~~a~~~g~~~a~~i~~~l~ 387 (456)
T 1lqt_A 365 TGVIGTNKKDAQDTVDTLIKNLG 387 (456)
T ss_dssp CSCTTHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 23455799999999999987653
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-32 Score=297.36 Aligned_cols=279 Identities=17% Similarity=0.174 Sum_probs=193.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~ 80 (454)
+||+|||||+||++||..|++. |+ +|+|+|+++.+++...+. .+......+......+.+.+ +++++.+.....
T Consensus 188 ~~VvVIGgGpAGl~aA~~L~~~--G~~~Vtv~E~~~~~GG~~~~~-ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~- 263 (1025)
T 1gte_A 188 AKIALLGAGPASISCASFLARL--GYSDITIFEKQEYVGGLSTSE-IPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE- 263 (1025)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSSSCSTHHHHT-SCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST-
T ss_pred CEEEEECccHHHHHHHHHHHhc--CCCcEEEEeCCCCCCcccccc-CCcccCCHHHHHHHHHHHHHCCcEEEcccEecc-
Confidence 5899999999999999999998 77 799999988766543221 11111111223333455666 999887644321
Q ss_pred CcccEEEeccCcEEEecEEEEecCC-CCCCCCCC---CceeeeeccchHHHHHHH-------------hhcCCeEEEEcC
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGA-SPRKIWYS---PHVITIRDTDSVAVLQEK-------------LKSAKKIVVIGN 143 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~-~p~~~~~~---~~~~~~~~~~~~~~l~~~-------------~~~~~~vvVvG~ 143 (454)
+.++++++..+.||+||||||+ +|+.++++ +....+.+..++.+..+. ...+++++||||
T Consensus 264 ---~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGg 340 (1025)
T 1gte_A 264 ---NEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGA 340 (1025)
T ss_dssp ---TSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECS
T ss_pred ---ceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhcccccccccccccccCCcEEEECC
Confidence 2355555556789999999999 48766542 111223444454432211 113679999999
Q ss_pred chhHHHHHHHhc--CC-cEEEEEeCCC-ccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccc
Q psy1545 144 GGIATELVHELS--NV-DIVWVVKDKH-ISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQ 219 (454)
Q Consensus 144 G~~g~e~a~~l~--g~-~V~~i~~~~~-~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (454)
|++|+|+|..+. |+ +||+++|+++ .++. ++.+ + ..+
T Consensus 341 G~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~-~~~e----~-~~~---------------------------------- 380 (1025)
T 1gte_A 341 GDTAFDCATSALRCGARRVFLVFRKGFVNIRA-VPEE----V-ELA---------------------------------- 380 (1025)
T ss_dssp SHHHHHHHHHHHHTTCSEEEEECSSCGGGCCS-CHHH----H-HHH----------------------------------
T ss_pred ChHHHHHHHHHHHcCCCEEEEEEecChhhCCC-CHHH----H-HHH----------------------------------
Confidence 999999999886 76 8999998873 3331 1221 1 222
Q ss_pred cccccCccCCceEEEeCceEEEEEcCCCCccceEEEec------CC---------cEEecCEEEEeeccCcC-cccccCC
Q psy1545 220 VNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT------NG---------HTHACDIVVSAIGVVPN-SNIQVHG 283 (454)
Q Consensus 220 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~------~g---------~~~~~D~vi~a~G~~p~-~~~~~~~ 283 (454)
++.||++++++.+.++..++ +....+++. +| .++++|.||+|+|++|+ .. ++..
T Consensus 381 -------~~~Gv~~~~~~~~~~i~~~~--g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~-l~~~ 450 (1025)
T 1gte_A 381 -------KEEKCEFLPFLSPRKVIVKG--GRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPK-VKEA 450 (1025)
T ss_dssp -------HHTTCEEECSEEEEEEEEET--TEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHH-HHHH
T ss_pred -------HHcCCEEEeCCCceEEEccC--CeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchh-hhhc
Confidence 23799999999999887533 222333332 22 47899999999999875 44 5544
Q ss_pred -CCceecCCCceEecc-ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 284 -TPFELAPDCGIGVNE-LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 284 -~~l~~~~~g~i~vd~-~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
.|++++++|+|.||+ ++||+.|+|||+|||+..+ .+++.|+.||+.||.+|.+.+
T Consensus 451 ~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~----------~~~~~A~~~G~~aA~~i~~~L 507 (1025)
T 1gte_A 451 LSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMA----------NTTVESVNDGKQASWYIHKYI 507 (1025)
T ss_dssp TTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSC----------CCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCceECCCCCEEECCCCCccCCCCEEEeCCCCCCc----------hHHHHHHHHHHHHHHHHHHHH
Confidence 578888899999997 8999999999999998743 477889999999999998643
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=280.55 Aligned_cols=275 Identities=16% Similarity=0.151 Sum_probs=194.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccc--ccccccccchhhhHHHHHhc--CcEEEcc-eE
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVP--VTKLLSDITVEETDANKFEG--LCTVIVD-TV 76 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~i~~~~~-~v 76 (454)
++||+|||||+||++||..|++. |++|+|||+++.+++.+.... ........++.....+.+.+ +++++.+ +|
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~--G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V 205 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRS--GARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTV 205 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhC--CCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEE
Confidence 47899999999999999999998 899999999877654333210 00111122333333344443 7888755 78
Q ss_pred EEEeCcccEEEe-----------------ccCcEEEecEEEEecCCCCCCCCCC-CceeeeeccchHHHHHHH--hhcCC
Q psy1545 77 AAIDPRVNCVIT-----------------EKQNRIKYKTLCICTGASPRKIWYS-PHVITIRDTDSVAVLQEK--LKSAK 136 (454)
Q Consensus 77 ~~i~~~~~~v~~-----------------~~g~~i~~d~lviAtG~~p~~~~~~-~~~~~~~~~~~~~~l~~~--~~~~~ 136 (454)
..++.......+ .++..+.||+||||||++|+.|+++ .....+.+..++..+.+. ..+++
T Consensus 206 ~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ipG~~~~gv~~~~~~~~~l~~~~~~~gk 285 (965)
T 2gag_A 206 FGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVFENNDRPGIMLAGAVRSYLNRYGVRAGA 285 (965)
T ss_dssp EEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCCBTCCSTTEEEHHHHHHHHHTTCEESCS
T ss_pred EeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCCCCCCCCCCEEEhHHHHHHHHhcCCCCCC
Confidence 877755321111 1123789999999999999888877 111222233333333221 12358
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGP 214 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 214 (454)
+++|||+|++|+|+|..|. |.+|+++++++++++. .+.+.
T Consensus 286 ~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~~----------~~~l~---------------------------- 327 (965)
T 2gag_A 286 RIAVATTNDSAYELVRELAATGGVVAVIDARSSISAA----------AAQAV---------------------------- 327 (965)
T ss_dssp SEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCHH----------HHHHH----------------------------
T ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccchh----------HHHHH----------------------------
Confidence 9999999999999999986 8999999998876431 33343
Q ss_pred ccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC-------C--cEEecCEEEEeeccCcCcccccCCCC
Q psy1545 215 DWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN-------G--HTHACDIVVSAIGVVPNSNIQVHGTP 285 (454)
Q Consensus 215 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~-------g--~~~~~D~vi~a~G~~p~~~~~~~~~~ 285 (454)
+.||++++++.+.++..+++ +....+.+.+ | +++++|.|++|+|++|+.+ ++..
T Consensus 328 -------------~~GV~v~~~~~v~~i~~~~~-~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~-l~~~-- 390 (965)
T 2gag_A 328 -------------ADGVQVISGSVVVDTEADEN-GELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVH-LHSQ-- 390 (965)
T ss_dssp -------------HTTCCEEETEEEEEEEECTT-SCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCH-HHHH--
T ss_pred -------------hCCeEEEeCCEeEEEeccCC-CCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChH-HHHh--
Confidence 38999999999999987311 1233455543 5 6799999999999999998 6543
Q ss_pred ceecCCCceEeccccc-----cccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 286 FELAPDCGIGVNELMQ-----TSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 286 l~~~~~g~i~vd~~~~-----t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
..++|.+|++++ |+.|+|||+|||++.+ . ...|..||+.||.+|++.+
T Consensus 391 ----~~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~~----------~-l~~A~~~G~~aA~~i~~~l 443 (965)
T 2gag_A 391 ----RQGKLDWDTTIHAFVPADAVANQHLAGAMTGRL----------D-TASALSTGAATGAAAATAA 443 (965)
T ss_dssp ----TTCCEEEETTTTEEEECSCCTTEEECGGGGTCC----------S-HHHHHHHHHHHHHHHHHHT
T ss_pred ----CCCcEEEcCcccccccCCCCCCEEEEEecCCch----------h-HHHHHHHHHHHHHHHHHHc
Confidence 257899999887 8999999999999743 2 2379999999999998654
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=252.96 Aligned_cols=264 Identities=15% Similarity=0.163 Sum_probs=187.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCC--eEEEECCCCcccccccccccc-----------------------------c
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGE--SIGLVTPSGIVKAVTKTVPVT-----------------------------K 50 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~--~v~lie~~~~~~~~~~~~~~~-----------------------------~ 50 (454)
.+||+|||||++|+++|..|++. |. +|+|+|+++..++.+.+.... .
T Consensus 6 ~~dV~IIGaG~aGl~aA~~L~~~--G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~ 83 (447)
T 2gv8_A 6 IRKIAIIGAGPSGLVTAKALLAE--KAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSP 83 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT--TCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCC
T ss_pred CCEEEEECccHHHHHHHHHHHhc--CCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCc
Confidence 47999999999999999999998 77 999999987665544432100 0
Q ss_pred c--------------ccc---------c---chhhhHHHHHhc--CcEEE-cceEEEEeCccc--EEEecc---Cc---E
Q psy1545 51 L--------------LSD---------I---TVEETDANKFEG--LCTVI-VDTVAAIDPRVN--CVITEK---QN---R 93 (454)
Q Consensus 51 ~--------------~~~---------~---~~~~~~~~~~~~--~i~~~-~~~v~~i~~~~~--~v~~~~---g~---~ 93 (454)
. +.. + .....++..+.. +..++ ..+|+.++.... .|++.+ |+ +
T Consensus 84 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~ 163 (447)
T 2gv8_A 84 LYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISK 163 (447)
T ss_dssp CCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEE
T ss_pred hhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEE
Confidence 0 000 0 000112222222 44443 558888876543 566655 66 7
Q ss_pred EEecEEEEecCC--CCCCCCCCC----------ceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCc-
Q psy1545 94 IKYKTLCICTGA--SPRKIWYSP----------HVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVD- 158 (454)
Q Consensus 94 i~~d~lviAtG~--~p~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~- 158 (454)
+.||+||+|||. .|+.|++++ .+++.+...+...+ .+++|+|||+|.+|+|+|..|+ +.+
T Consensus 164 ~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~-----~~k~VvVvG~G~sg~e~A~~l~~~~~~~ 238 (447)
T 2gv8_A 164 DIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELF-----VGESVLVVGGASSANDLVRHLTPVAKHP 238 (447)
T ss_dssp EEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGG-----TTCCEEEECSSHHHHHHHHHHTTTSCSS
T ss_pred EEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhc-----CCCEEEEEccCcCHHHHHHHHHHHhCCc
Confidence 999999999998 788887761 13333333333322 3899999999999999999997 888
Q ss_pred EEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCce
Q psy1545 159 IVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCE 238 (454)
Q Consensus 159 V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~ 238 (454)
|++++|++.+ + +..||++ +..
T Consensus 239 V~l~~r~~~~----------------l-----------------------------------------~~~~i~~--~~~ 259 (447)
T 2gv8_A 239 IYQSLLGGGD----------------I-----------------------------------------QNESLQQ--VPE 259 (447)
T ss_dssp EEEECTTCCS----------------C-----------------------------------------BCSSEEE--ECC
T ss_pred EEEEeCCCCc----------------C-----------------------------------------CCCCeEE--ecC
Confidence 9999887643 1 1257764 467
Q ss_pred EEEEEcCCCCccceEEEecCCcE-EecCEEEEeeccCcCcccc-----cCCCCceecCCCceEeccccc---cccCceee
Q psy1545 239 VERIVDSEDDTCNAYVKLTNGHT-HACDIVVSAIGVVPNSNIQ-----VHGTPFELAPDCGIGVNELMQ---TSISNVYA 309 (454)
Q Consensus 239 v~~i~~~~~~~~~~~v~~~~g~~-~~~D~vi~a~G~~p~~~~~-----~~~~~l~~~~~g~i~vd~~~~---t~~~~Iya 309 (454)
|+++..++ ..|.++||++ +++|.||+|||++|+.+ + ++..+..+..++.+.++.+.+ ++.|+||+
T Consensus 260 v~~~~~~~-----~~v~~~dG~~~~~~D~vi~atG~~~~~~-~l~~~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~ 333 (447)
T 2gv8_A 260 ITKFDPTT-----REIYLKGGKVLSNIDRVIYCTGYLYSVP-FPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAF 333 (447)
T ss_dssp EEEEETTT-----TEEEETTTEEECCCSEEEECCCBCCCCC-CHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEE
T ss_pred eEEEecCC-----CEEEECCCCEeccCCEEEECCCCCcCCC-CCcccccccccCceecCCCcccccccccccCCCCcEEE
Confidence 88887543 2578889976 79999999999999998 8 765432333356677777766 78999999
Q ss_pred cCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 310 AGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 310 ~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
+||+... .+++.|..||+++|++|.+..
T Consensus 334 ~G~~~~~-----------~~~~~a~~qa~~~a~~~~g~~ 361 (447)
T 2gv8_A 334 VGLALHV-----------VPFPTSQAQAAFLARVWSGRL 361 (447)
T ss_dssp SSCCBSS-----------CHHHHHHHHHHHHHHHHTTSS
T ss_pred Eeccccc-----------cCchHHHHHHHHHHHHHcCCC
Confidence 9999753 256789999999999999864
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=259.91 Aligned_cols=333 Identities=14% Similarity=0.073 Sum_probs=193.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCC---CeEEEECCCCccccccccc--c--c-------------ccc-c---------
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPG---ESIGLVTPSGIVKAVTKTV--P--V-------------TKL-L--------- 52 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g---~~v~lie~~~~~~~~~~~~--~--~-------------~~~-~--------- 52 (454)
+||+|||||++|+++|..|++.++. .+|+|||+++.+++..... . . +.. +
T Consensus 31 ~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~ 110 (463)
T 3s5w_A 31 HDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKH 110 (463)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHT
T ss_pred CCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhc
Confidence 5999999999999999999998211 8999999998765322110 0 0 000 0
Q ss_pred -------------cccchhhhHHHHHhc--CcEEEcc-eEEEEeCc---cc----EEEeccCc----EEEecEEEEecCC
Q psy1545 53 -------------SDITVEETDANKFEG--LCTVIVD-TVAAIDPR---VN----CVITEKQN----RIKYKTLCICTGA 105 (454)
Q Consensus 53 -------------~~~~~~~~~~~~~~~--~i~~~~~-~v~~i~~~---~~----~v~~~~g~----~i~~d~lviAtG~ 105 (454)
........+..++.+ ++.+..+ +|+.++.. .. .|.+.++. ++.||+||+|||+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~ 190 (463)
T 3s5w_A 111 DRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGG 190 (463)
T ss_dssp TCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCC
T ss_pred CceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCC
Confidence 000000122223333 6677654 78888765 33 56666665 8999999999999
Q ss_pred CCCCCCCC---Cce-eeeeccchHH---HHHHHhhcCCeEEEEcCchhHHHHHHHhc----CCcEEEEEeCCCccccccC
Q psy1545 106 SPRKIWYS---PHV-ITIRDTDSVA---VLQEKLKSAKKIVVIGNGGIATELVHELS----NVDIVWVVKDKHISATFLD 174 (454)
Q Consensus 106 ~p~~~~~~---~~~-~~~~~~~~~~---~l~~~~~~~~~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~~~~~~~~d 174 (454)
.|+.|+.. ... ..+++.+... .+......+++++|||+|.+|+|+|..|. +.+|++++|++.+++....
T Consensus 191 ~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~ 270 (463)
T 3s5w_A 191 TPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDS 270 (463)
T ss_dssp EECCCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCC
T ss_pred CCCCcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCC
Confidence 98877632 121 1222222222 12111124899999999999999999885 7899999999987663111
Q ss_pred Ccchhhh----HHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCcc
Q psy1545 175 PGAAEFF----QDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTC 250 (454)
Q Consensus 175 ~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~ 250 (454)
+-..+.+ ...+..........+.....-.....+...+.+.+...++......+.||++++++.|++++.+++
T Consensus 271 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~--- 347 (463)
T 3s5w_A 271 PFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQ--- 347 (463)
T ss_dssp HHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETT---
T ss_pred ccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCC---
Confidence 1000000 000000000000001111111011111111112222222222222347999999999999987653
Q ss_pred ceEEEec---CCc--EEecCEEEEeeccCcC--cccccCCCCceecCCCceEeccccccc-----cCceeecCcccccCC
Q psy1545 251 NAYVKLT---NGH--THACDIVVSAIGVVPN--SNIQVHGTPFELAPDCGIGVNELMQTS-----ISNVYAAGDVCTPSW 318 (454)
Q Consensus 251 ~~~v~~~---~g~--~~~~D~vi~a~G~~p~--~~~~~~~~~l~~~~~g~i~vd~~~~t~-----~~~Iya~GD~~~~~~ 318 (454)
.+.+.+. +|+ ++++|.||+|||++|+ .+ ++......+ |++.||+++|+. .|+|||+|||.....
T Consensus 348 ~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~-~l~~l~~~~---g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~g 423 (463)
T 3s5w_A 348 GIELALRDAGSGELSVETYDAVILATGYERQLHRQ-LLEPLAEYL---GDHEIGRDYRLQTDERCKVAIYAQGFSQASHG 423 (463)
T ss_dssp EEEEEEEETTTCCEEEEEESEEEECCCEECCC-CT-TTGGGGGGB---C--CCCTTSBCCBCTTBCSEEEESSCCHHHHC
T ss_pred EEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccc-hhHHHHHHh---CCcccCcccccccCCCCCCeEEEcCCCcccCC
Confidence 4666665 664 4999999999999999 44 555433222 889999999954 467999999986321
Q ss_pred ccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 319 DLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 319 ~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
.. .+.+...|.+++++++..+...
T Consensus 424 ~~-----~~~l~~~a~r~~~i~~~~~~~~ 447 (463)
T 3s5w_A 424 LS-----DTLLSVLPVRAEEISGSLYQHL 447 (463)
T ss_dssp TT-----TTSSTTHHHHHHHHHHHHHHHH
T ss_pred cC-----ccchhHHHHHHHHHHHHHHhhc
Confidence 11 1245667888888887766554
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-30 Score=257.76 Aligned_cols=253 Identities=16% Similarity=0.166 Sum_probs=186.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccc-cccc--ccchhhhHHHHHhc-CcEEEc-ceE
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVT-KLLS--DITVEETDANKFEG-LCTVIV-DTV 76 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~-~i~~~~-~~v 76 (454)
++||+|||||++|+++|..|++. .+|+|||+++.+++........ ..+. ..++.....+.+ . +++++. .++
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~---~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v 183 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY---LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSA 183 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT---CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEE
T ss_pred cCCEEEECccHHHHHHHHHHHhc---CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEE
Confidence 46999999999999999999986 7999999998776543321110 0011 111222222333 4 888764 477
Q ss_pred EEEeCcccEEEe---ccCc--EEEecEEEEecCCCCCCCCCC-CceeeeeccchHHHHHHHh--hcCCeEEEEcCchhHH
Q psy1545 77 AAIDPRVNCVIT---EKQN--RIKYKTLCICTGASPRKIWYS-PHVITIRDTDSVAVLQEKL--KSAKKIVVIGNGGIAT 148 (454)
Q Consensus 77 ~~i~~~~~~v~~---~~g~--~i~~d~lviAtG~~p~~~~~~-~~~~~~~~~~~~~~l~~~~--~~~~~vvVvG~G~~g~ 148 (454)
..++.+.+.+.+ .+++ .+.||+||+|||+.|+.|+++ .+...+.+..++..+.+.. .++++++|+|+|++|+
T Consensus 184 ~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~vvViGgG~~gl 263 (493)
T 1y56_A 184 LGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFENNDMPGVFRRDFALEVMNVWEVAPGRKVAVTGSKADEV 263 (493)
T ss_dssp CCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCCTTTTSTTEEEHHHHHHHHHTSCBCSCSEEEEESTTHHHH
T ss_pred EEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCCCCCCCCCEEEcHHHHHHHHhcccCCCCEEEEECCCHHHH
Confidence 777766553322 3443 689999999999999888877 2222233445555554432 2468999999999998
Q ss_pred HHHHHhcCCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccC
Q psy1545 149 ELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRD 228 (454)
Q Consensus 149 e~a~~l~g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 228 (454)
| +.+ ++
T Consensus 264 e---------------------------------~~l-----------------------------------------~~ 269 (493)
T 1y56_A 264 I---------------------------------QEL-----------------------------------------ER 269 (493)
T ss_dssp H---------------------------------HHH-----------------------------------------HH
T ss_pred H---------------------------------HHH-----------------------------------------Hh
Confidence 7 112 22
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCcee--cCCCceE-eccccccccC
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFEL--APDCGIG-VNELMQTSIS 305 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~--~~~g~i~-vd~~~~t~~~ 305 (454)
.||++++++.+.++..++. ...+.+++|+++++|.|++|+|++|+.+ +++..|+++ +++|+|. ||+++| +.|
T Consensus 270 ~GV~v~~~~~v~~i~~~~~---v~~v~~~~g~~i~aD~Vv~a~G~~p~~~-l~~~~g~~~~~~~~g~i~~vd~~~~-s~~ 344 (493)
T 1y56_A 270 WGIDYVHIPNVKRVEGNEK---VERVIDMNNHEYKVDALIFADGRRPDIN-PITQAGGKLRFRRGYYSPVLDEYHR-IKD 344 (493)
T ss_dssp HTCEEEECSSEEEEECSSS---CCEEEETTCCEEECSEEEECCCEEECCH-HHHHTTCCEEEETTEEEECCCTTSE-EET
T ss_pred CCcEEEeCCeeEEEecCCc---eEEEEeCCCeEEEeCEEEECCCcCcCch-HHHhcCCCccccCCceeeccccccC-cCC
Confidence 7999999999999987642 4567788899999999999999999998 887777654 5688887 899999 999
Q ss_pred ceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 306 NVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 306 ~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
+|||+|||+.. +++..|..||+.||.||.+.+
T Consensus 345 ~vya~GD~~~~-----------~~~~~A~~~g~~aa~~i~~~l 376 (493)
T 1y56_A 345 GIYVAGSAVSI-----------KPHYANYLEGKLVGAYILKEF 376 (493)
T ss_dssp TEEECSTTTCC-----------CCHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEeccCCc-----------cCHHHHHHHHHHHHHHHHHHc
Confidence 99999999873 467789999999999998754
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-30 Score=269.17 Aligned_cols=269 Identities=15% Similarity=0.150 Sum_probs=191.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccccccc-chhhhHHHHHhc--CcEEEcceEEE
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDI-TVEETDANKFEG--LCTVIVDTVAA 78 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~i~~~~~~v~~ 78 (454)
++||+|||||+||++||..|+++ |++|+|||+++..++.+............ .+.......+.+ +++++.++
T Consensus 391 ~~~VvIIGgG~AGl~aA~~La~~--G~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~~--- 465 (690)
T 3k30_A 391 DARVLVVGAGPSGLEAARALGVR--GYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRES--- 465 (690)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESSC---
T ss_pred cceEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEECC---
Confidence 36899999999999999999999 99999999998776554432211111111 122222233333 67766542
Q ss_pred EeCcccEEEeccCcEEEecEEEEecCCCCC--------CCCCC-CceeeeeccchHHHHHHHhhcCCeEEEEc--CchhH
Q psy1545 79 IDPRVNCVITEKQNRIKYKTLCICTGASPR--------KIWYS-PHVITIRDTDSVAVLQEKLKSAKKIVVIG--NGGIA 147 (454)
Q Consensus 79 i~~~~~~v~~~~g~~i~~d~lviAtG~~p~--------~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~vvVvG--~G~~g 147 (454)
.+...++..+.||+||+|||+.|+ .|+++ .....+.+..++... ....+++++||| +|.+|
T Consensus 466 ------~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~~~~~l~~--~~~~g~~VvViG~ggG~~g 537 (690)
T 3k30_A 466 ------PMTGDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDDLFAG--RLPDGKKVVVYDDDHYYLG 537 (690)
T ss_dssp ------CCCHHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEECHHHHHTT--CCCSSSEEEEEECSCSSHH
T ss_pred ------eecHHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEcHHHHhCC--CCCCCCEEEEEcCCCCccH
Confidence 133334456889999999999844 55665 211223343333322 233578899999 99999
Q ss_pred HHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccC
Q psy1545 148 TELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGS 225 (454)
Q Consensus 148 ~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 225 (454)
+|+|..|. |.+|+++++.+.+++...++.....+.+.+.+
T Consensus 538 ~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~-------------------------------------- 579 (690)
T 3k30_A 538 GVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIE-------------------------------------- 579 (690)
T ss_dssp HHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHH--------------------------------------
T ss_pred HHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHH--------------------------------------
Confidence 99999996 99999999999887754446666666666654
Q ss_pred ccCCceEEEeCceEEEEEcCCCCccceEEEe---cCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEecccccc
Q psy1545 226 SRDTKITIEYSCEVERIVDSEDDTCNAYVKL---TNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQT 302 (454)
Q Consensus 226 l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~---~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t 302 (454)
.||++++++.|++++.++ ..+.. .+++++++|.||+|+|++|+.+ ++...+ ..+. +|
T Consensus 580 ---~GV~i~~~~~V~~i~~~~-----~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~-l~~~l~----~~~~-------~t 639 (690)
T 3k30_A 580 ---NGVARVTDHAVVAVGAGG-----VTVRDTYASIERELECDAVVMVTARLPREE-LYLDLV----ARRD-------AG 639 (690)
T ss_dssp ---TTCEEEESEEEEEEETTE-----EEEEETTTCCEEEEECSEEEEESCEEECCH-HHHHHH----HHHH-------HT
T ss_pred ---CCCEEEcCcEEEEEECCe-----EEEEEccCCeEEEEECCEEEECCCCCCChH-HHHHHh----hhhc-------cc
Confidence 899999999999998754 23332 2456899999999999999997 654321 1121 89
Q ss_pred ccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCc
Q psy1545 303 SISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEP 352 (454)
Q Consensus 303 ~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~ 352 (454)
+.|+|||+|||+.. +.+..|+.||+.||.||.+.+.+++
T Consensus 640 ~~~~VyaiGD~~~~-----------~~~~~A~~~g~~aa~~i~~~l~g~~ 678 (690)
T 3k30_A 640 EIASVRGIGDAWAP-----------GTIAAAVWSGRRAAEEFDAVLPSND 678 (690)
T ss_dssp SCSEEEECGGGTSC-----------BCHHHHHHHHHHHHHHTTCCCCCTT
T ss_pred CCCCEEEEeCCCch-----------hhHHHHHHHHHHHHHHHHhhccCCC
Confidence 99999999999873 3556699999999999999876653
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-30 Score=272.24 Aligned_cols=272 Identities=16% Similarity=0.134 Sum_probs=184.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccch----hhhHHHHHhcCcEEEcceEE
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITV----EETDANKFEGLCTVIVDTVA 77 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~v~ 77 (454)
++||+|||||+||++||..|++. |++|+|||+++.+++.+.+.........+.. .....+.+.. ....+.
T Consensus 389 ~~~VvIIGgGpAGl~aA~~L~~~--G~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~----~~~~~v 462 (729)
T 1o94_A 389 KDSVLIVGAGPSGSEAARVLMES--GYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLK----KNKESQ 462 (729)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHH----HSTTCE
T ss_pred CceEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhc----ccCCce
Confidence 36899999999999999999998 8999999999877654443221111111111 1111111110 000112
Q ss_pred EEeCcccEEEeccCcEEEecEEEEecCCC--------CCCCCCC-Cc--eeeeeccchHHHHHHHhhcCCeEEEEc--Cc
Q psy1545 78 AIDPRVNCVITEKQNRIKYKTLCICTGAS--------PRKIWYS-PH--VITIRDTDSVAVLQEKLKSAKKIVVIG--NG 144 (454)
Q Consensus 78 ~i~~~~~~v~~~~g~~i~~d~lviAtG~~--------p~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~vvVvG--~G 144 (454)
.+.. ++.++++++..+.||+||||||+. |+.|+++ .. ...+.+..++.. .....+++++||| ||
T Consensus 463 ~i~~-~~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~--~~~~~gk~VvVIG~GgG 539 (729)
T 1o94_A 463 LALG-QKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMD--GKKKIGKRVVILNADTY 539 (729)
T ss_dssp EECS-CCCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHH--CCSCCCSEEEEEECCCS
T ss_pred EEEe-CeEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhc--CCCCCCCeEEEEcCCCC
Confidence 2222 233555455568899999999998 4556665 11 112334444432 2233478999999 99
Q ss_pred hhHHHHHHHhc--CCcEEEEEeCCCcccc-ccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccc
Q psy1545 145 GIATELVHELS--NVDIVWVVKDKHISAT-FLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVN 221 (454)
Q Consensus 145 ~~g~e~a~~l~--g~~V~~i~~~~~~~~~-~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (454)
.+|+|+|..|. |.+||++++.+ +.+. .++.. ...+.+.+.+
T Consensus 540 ~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~-~~~~~~~l~~---------------------------------- 583 (729)
T 1o94_A 540 FMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLE-YPNMMRRLHE---------------------------------- 583 (729)
T ss_dssp SHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTC-HHHHHHHHHH----------------------------------
T ss_pred chHHHHHHHHHHcCCEEEEEeccc-cccccccccc-HHHHHHHHHh----------------------------------
Confidence 99999999986 99999999988 6542 13333 3444454533
Q ss_pred cccCccCCceEEEeCceEEEEEcCCCCccceEEEe--cCC-cE------------------EecCEEEEeeccCcCcccc
Q psy1545 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL--TNG-HT------------------HACDIVVSAIGVVPNSNIQ 280 (454)
Q Consensus 222 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~--~~g-~~------------------~~~D~vi~a~G~~p~~~~~ 280 (454)
.||++++++.++++..++ +.+.. .++ ++ +++|.||+|+|++|+.+ +
T Consensus 584 -------~GV~i~~~~~v~~i~~~~-----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~-l 650 (729)
T 1o94_A 584 -------LHVEELGDHFCSRIEPGR-----MEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECT-L 650 (729)
T ss_dssp -------TTCEEECSEEEEEEETTE-----EEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCH-H
T ss_pred -------CCCEEEcCcEEEEEECCe-----EEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChH-H
Confidence 899999999999998643 23332 233 32 99999999999999987 6
Q ss_pred cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCC
Q psy1545 281 VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKN 350 (454)
Q Consensus 281 ~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 350 (454)
+... . ..+|+++||+.|+|||+|||+.. +.+..|+.||+.||.+|.+.+.+
T Consensus 651 ~~~l--~------~~vd~~~~t~~~~VyAiGD~~~~-----------~~~~~A~~~G~~aA~~i~~~l~~ 701 (729)
T 1o94_A 651 WNEL--K------ARESEWAENDIKGIYLIGDAEAP-----------RLIADATFTGHRVAREIEEANPQ 701 (729)
T ss_dssp HHHH--H------HTGGGTGGGTCCEEEECGGGTSC-----------CCHHHHHHHHHHHHHTTTSSCTT
T ss_pred HHHH--h------hhcccccccCCCCeEEEeCccch-----------hhHHHHHHHHHHHHHHhhhhccc
Confidence 5422 1 13689999999999999999862 35678999999999999986543
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-27 Score=239.15 Aligned_cols=320 Identities=13% Similarity=0.063 Sum_probs=198.9
Q ss_pred cccEEEECCCHHHHHHHHHHh-hcCCCCeEEEECCCCcccccccccccccc---c-----------------------cc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLA-FLHPGESIGLVTPSGIVKAVTKTVPVTKL---L-----------------------SD 54 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~-~~~~g~~v~lie~~~~~~~~~~~~~~~~~---~-----------------------~~ 54 (454)
++||+|||||++|+++|..|+ +. |.+|+|+|+++..++.+....++.. . ..
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~--G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~ 85 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHEL--GLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYIT 85 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC--CCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCC
Confidence 379999999999999999999 76 8899999998766554432211110 0 00
Q ss_pred cchhhhHHHHH-hc-Cc--EEE-cceEEEEeCccc----EEEeccCcEEEecEEEEecC--CCCCCCCCC--Cc--eeee
Q psy1545 55 ITVEETDANKF-EG-LC--TVI-VDTVAAIDPRVN----CVITEKQNRIKYKTLCICTG--ASPRKIWYS--PH--VITI 119 (454)
Q Consensus 55 ~~~~~~~~~~~-~~-~i--~~~-~~~v~~i~~~~~----~v~~~~g~~i~~d~lviAtG--~~p~~~~~~--~~--~~~~ 119 (454)
......+...+ .+ ++ .+. ..+|+.++.+.. .|++++|+++.||+||+||| ++|+.|+++ +. ...+
T Consensus 86 ~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~ 165 (540)
T 3gwf_A 86 QPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETI 165 (540)
T ss_dssp HHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCSEEE
T ss_pred HHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCCCEE
Confidence 00011122222 22 55 454 458888876544 78888888999999999999 588888887 11 1112
Q ss_pred eccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCC------
Q psy1545 120 RDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTA------ 191 (454)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~------ 191 (454)
++...... ....+|+++|||+|.+|+|+|..|+ +.+||+++|.+++....+++++.....+.+++....
T Consensus 166 ~~~~~~~~---~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (540)
T 3gwf_A 166 HTAAWPEG---KSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAK 242 (540)
T ss_dssp EGGGCCSS---CCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHHHHHH
T ss_pred EeecCCCc---cccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHHHHHHH
Confidence 22221111 1124899999999999999999997 899999999998544446777777766665421000
Q ss_pred ------------------Ch---h-----------------------------------hhhhhcccccC-CCCCCCCCC
Q psy1545 192 ------------------KP---E-----------------------------------TIFKRMRYNTG-GEKGPSLGP 214 (454)
Q Consensus 192 ------------------~~---~-----------------------------------~~~~~~~~~~~-~~~~~~l~~ 214 (454)
.. . ....+++-... ..+...+.|
T Consensus 243 ~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l~P 322 (540)
T 3gwf_A 243 NSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKLMP 322 (540)
T ss_dssp TSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHHHHCC
T ss_pred hccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCC
Confidence 00 0 00000000000 000000011
Q ss_pred c--cccc----cccccCccCCceEEEe--CceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCc
Q psy1545 215 D--WHTQ----VNLHGSSRDTKITIEY--SCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPF 286 (454)
Q Consensus 215 ~--~~~~----~~~~~~l~~~gv~i~~--~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l 286 (454)
+ +-++ -...+.+.+.+|+++. +..|++++.++ |.++||+++++|.||+|||++++.. ++.. +
T Consensus 323 ~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~g-------v~~~dG~~~~~DvIV~ATGf~~~~~-~~~~--~ 392 (540)
T 3gwf_A 323 KGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKG-------VVTEDGVLHELDVLVFATGFDAVDG-NYRR--I 392 (540)
T ss_dssp CSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSSE-------EEETTCCEEECSEEEECCCBSCSSH-HHHT--S
T ss_pred CCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecCe-------EEcCCCCEEECCEEEECCccCcccc-CcCc--c
Confidence 1 0000 0123445678999996 77999998765 8899999999999999999999875 4443 2
Q ss_pred eecCCCceEeccc----------cc-cccCceeec-CcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 287 ELAPDCGIGVNEL----------MQ-TSISNVYAA-GDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 287 ~~~~~g~i~vd~~----------~~-t~~~~Iya~-GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
.+...+++.+++. +. .+.||+|++ |..+.. ......+..|++++++.|..
T Consensus 393 ~i~g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~----------~s~~~~~e~q~~~i~~~i~~ 454 (540)
T 3gwf_A 393 EIRGRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPF----------TNLPPSIETQVEWISDTIGY 454 (540)
T ss_dssp EEECGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBC----------SCHHHHHHHHHHHHHHHHHH
T ss_pred eEECCCCcCHHHhhccChhhccccccCCCCceEEEecCCCCC----------ccHHHHHHHHHHHHHHHHHH
Confidence 3333344555432 22 478999999 776431 12345678889999887764
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=249.41 Aligned_cols=254 Identities=17% Similarity=0.136 Sum_probs=168.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccccccc-chhhhHHHHHhc-CcEEEcceEEEE
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDI-TVEETDANKFEG-LCTVIVDTVAAI 79 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~i~~~~~~v~~i 79 (454)
++||+|||||+||++||..|++. +++|+|||+++.+++.+.+.........+ +........+.+ +++++.++...
T Consensus 373 ~~~vvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~- 449 (671)
T 1ps9_A 373 KKNLAVVGAGPAGLAFAINAAAR--GHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVT- 449 (671)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCC-
T ss_pred CCeEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEec-
Confidence 36899999999999999999998 89999999998776554432211111111 122222334444 88887653211
Q ss_pred eCcccEEEeccCcEE-EecEEEEecCCCCCCCCCC-CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--
Q psy1545 80 DPRVNCVITEKQNRI-KYKTLCICTGASPRKIWYS-PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS-- 155 (454)
Q Consensus 80 ~~~~~~v~~~~g~~i-~~d~lviAtG~~p~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~-- 155 (454)
...+ .||+||||||++|+.|+++ .....+.+..+.. ......+++++|||||.+|+|+|..|+
T Consensus 450 -----------~~~~~~~d~lviAtG~~p~~~~i~G~~~~~v~~~~~~l--~~~~~~~~~VvVIGgG~~g~E~A~~l~~~ 516 (671)
T 1ps9_A 450 -----------ADQLQAFDETILASGIVPRTPPIDGIDHPKVLSYLDVL--RDKAPVGNKVAIIGCGGIGFDTAMYLSQP 516 (671)
T ss_dssp -----------SSSSCCSSEEEECCCEEECCCCCBTTTSTTEEEHHHHH--TSCCCCCSEEEEECCHHHHHHHHHHHTCC
T ss_pred -----------HHHhhcCCEEEEccCCCcCCCCCCCCCCCcEeeHHHHh--hCCCCCCCeEEEECCChhHHHHHHHHHhc
Confidence 0123 8999999999999988877 1111122333322 112234799999999999999999986
Q ss_pred CCcEE-------------------------------------EEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhh
Q psy1545 156 NVDIV-------------------------------------WVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFK 198 (454)
Q Consensus 156 g~~V~-------------------------------------~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~ 198 (454)
|.+|+ ++++.+..+...+++.....+.+.
T Consensus 517 G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~-------------- 582 (671)
T 1ps9_A 517 GESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTT-------------- 582 (671)
T ss_dssp SSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHH--------------
T ss_pred CCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHH--------------
Confidence 64443 333333322222233333333333
Q ss_pred hcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEEEeeccCcC
Q psy1545 199 RMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPN 276 (454)
Q Consensus 199 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi~a~G~~p~ 276 (454)
+++.||++++++.+++++.++ +.+. .+| +++++|.||+|+|++|+
T Consensus 583 ---------------------------l~~~GV~v~~~~~v~~i~~~~-----v~~~-~~G~~~~i~~D~Vi~a~G~~p~ 629 (671)
T 1ps9_A 583 ---------------------------LLSRGVKMIPGVSYQKIDDDG-----LHVV-INGETQVLAVDNVVICAGQEPN 629 (671)
T ss_dssp ---------------------------HHHTTCEEECSCEEEEEETTE-----EEEE-ETTEEEEECCSEEEECCCEEEC
T ss_pred ---------------------------HHhcCCEEEeCcEEEEEeCCe-----EEEe-cCCeEEEEeCCEEEECCCcccc
Confidence 345899999999999998532 3333 677 67999999999999999
Q ss_pred cccccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhh
Q psy1545 277 SNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCM 344 (454)
Q Consensus 277 ~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 344 (454)
.+ +++. + +...++||++|||+... .+.+..|++||..+|.||
T Consensus 630 ~~-l~~~----l------------~~~g~~v~aiGD~~~~~---------~~~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 630 RA-LAQP----L------------IDSGKTVHLIGGCDVAM---------ELDARRAIAQGTRLALEI 671 (671)
T ss_dssp CT-THHH----H------------HTTTCCEEECGGGTCCS---------SCCHHHHHHHHHHHHHHC
T ss_pred HH-HHHH----H------------HhcCCCEEEECCcCccC---------chhHHHHHHHHHHHHHhC
Confidence 87 6532 1 12237899999998753 235788999999999986
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=228.14 Aligned_cols=325 Identities=10% Similarity=0.078 Sum_probs=195.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc--------------------------cccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL--------------------------LSDI 55 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~--------------------------~~~~ 55 (454)
++||||||||++|+++|..|++. |.+|+|||+++.+++.+....++.. +...
T Consensus 9 ~~dVvIIGaG~aGl~aA~~L~~~--g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~ 86 (545)
T 3uox_A 9 ALDAVVIGAGVTGIYQAFLINQA--GMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQ 86 (545)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBH
T ss_pred CCCEEEECccHHHHHHHHHHHhC--CCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCH
Confidence 46999999999999999999997 8899999999876655433222210 0000
Q ss_pred chhhhHHHHHhc--Cc--EEE-cceEEEEeCccc----EEEeccCcEEEecEEEEecC--CCCCCCCCC--Cc--eeeee
Q psy1545 56 TVEETDANKFEG--LC--TVI-VDTVAAIDPRVN----CVITEKQNRIKYKTLCICTG--ASPRKIWYS--PH--VITIR 120 (454)
Q Consensus 56 ~~~~~~~~~~~~--~i--~~~-~~~v~~i~~~~~----~v~~~~g~~i~~d~lviAtG--~~p~~~~~~--~~--~~~~~ 120 (454)
.....+...+.+ ++ .+. ..+|+.++.++. .|++++|+++.||+||+||| ++|+.|+++ +. ...++
T Consensus 87 ~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~h 166 (545)
T 3uox_A 87 PEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGESFH 166 (545)
T ss_dssp HHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSEEEE
T ss_pred HHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCCeEE
Confidence 111112222222 44 443 458888875544 78888888999999999999 789888887 11 11122
Q ss_pred ccchHHH---HH-HHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCC----
Q psy1545 121 DTDSVAV---LQ-EKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNT---- 190 (454)
Q Consensus 121 ~~~~~~~---l~-~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~---- 190 (454)
+...... .. ..-..+|+|+|||+|.+|+|+|..|+ +.+||+++|.+++.....++++.....+.+++...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~p~~~~ 246 (545)
T 3uox_A 167 SSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDSLRNRYPTILE 246 (545)
T ss_dssp GGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHHHHHHHHTHHHHHH
T ss_pred cccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHHHHHHHhhhHHHHH
Confidence 2211111 00 00114899999999999999999997 88999999999854334677766665555432100
Q ss_pred --------------------CCh-------------------------------------hhhhhhccccc-CCCCCCCC
Q psy1545 191 --------------------AKP-------------------------------------ETIFKRMRYNT-GGEKGPSL 212 (454)
Q Consensus 191 --------------------~~~-------------------------------------~~~~~~~~~~~-~~~~~~~l 212 (454)
.+. ..+..+++-.. ...+...+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~l 326 (545)
T 3uox_A 247 YVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKIRQRVKDPVVAEKL 326 (545)
T ss_dssp HHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHHHT
T ss_pred HHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhC
Confidence 000 00000000000 00001112
Q ss_pred CC-ccccc---c----ccccCccCCceEEEe--CceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccC
Q psy1545 213 GP-DWHTQ---V----NLHGSSRDTKITIEY--SCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVH 282 (454)
Q Consensus 213 ~~-~~~~~---~----~~~~~l~~~gv~i~~--~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~ 282 (454)
.| ++... . ...+.+.+.+|+++. +..|++++.++ |.+++| ++++|.||+|||+++++. ++.
T Consensus 327 ~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~~g-------v~~~dG-~~~~D~IV~ATGf~~~~~-~~~ 397 (545)
T 3uox_A 327 IPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTPEG-------IKTADA-AYDLDVIIYATGFDAVTG-SLD 397 (545)
T ss_dssp SCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEETTE-------EEESSC-EEECSEEEECCCCBSSSC-SCT
T ss_pred CCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEccCe-------EEeCCC-eeecCEEEECCccccccc-cCC
Confidence 22 11111 0 123445678999997 78999998765 888999 999999999999998765 544
Q ss_pred CCCceecCCCceEecccc-----------ccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 283 GTPFELAPDCGIGVNELM-----------QTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 283 ~~~l~~~~~g~i~vd~~~-----------~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
. +.+...++..+++.. -.+.||+|.+.--... .+ .......+..|++++++.|..
T Consensus 398 ~--~~i~g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~gp~~~----~~---~~s~~~~~e~~~~~i~~~i~~ 463 (545)
T 3uox_A 398 R--IDIRGKDNVRLIDAWAEGPSTYLGLQARGFPNFFTLVGPHNG----ST---FCNVGVCGGLQAEWVLRMISY 463 (545)
T ss_dssp T--SEEECGGGCBHHHHTTTSCCCBTTTBCTTCTTEEECSSGGGT----GG---GSCHHHHHHHHHHHHHHHHHH
T ss_pred C--ceEECCCCccHHHhhccccceeeccccCCCCcEEEEeCCCCC----Cc---cccHHHHHHHHHHHHHHHHHH
Confidence 3 444334445555331 2468999988421111 00 112345678899999988763
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=227.20 Aligned_cols=318 Identities=11% Similarity=0.112 Sum_probs=193.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc--------------------------cccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL--------------------------LSDI 55 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~--------------------------~~~~ 55 (454)
++||+|||||++|+++|..|++. |.+|+|||+++.+++.+....++.. +...
T Consensus 21 ~~dVvIIGaG~aGl~aA~~L~~~--G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~ 98 (549)
T 4ap3_A 21 SYDVVVVGAGIAGLYAIHRFRSQ--GLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQ 98 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBH
T ss_pred CCCEEEECchHHHHHHHHHHHhC--CCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCH
Confidence 47999999999999999999997 8899999998776654432211110 0000
Q ss_pred chhhhHHHHH-hc-Cc--EEE-cceEEEEeCccc----EEEeccCcEEEecEEEEecC--CCCCCCCCC--Cc--eeeee
Q psy1545 56 TVEETDANKF-EG-LC--TVI-VDTVAAIDPRVN----CVITEKQNRIKYKTLCICTG--ASPRKIWYS--PH--VITIR 120 (454)
Q Consensus 56 ~~~~~~~~~~-~~-~i--~~~-~~~v~~i~~~~~----~v~~~~g~~i~~d~lviAtG--~~p~~~~~~--~~--~~~~~ 120 (454)
.....+...+ .+ ++ .+. ..+|+.++.+.. .|++++|+++.||+||+||| ++|+.|+++ +. ...++
T Consensus 99 ~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~~ 178 (549)
T 4ap3_A 99 PEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVH 178 (549)
T ss_dssp HHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTTGGGCCSEEEE
T ss_pred HHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceEE
Confidence 0011122222 22 54 454 458888876554 78888888999999999999 789888887 11 11222
Q ss_pred ccc---hHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChh-
Q psy1545 121 DTD---SVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPE- 194 (454)
Q Consensus 121 ~~~---~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~- 194 (454)
+.. +...+ .+|+++|||+|.+|+|+|..|+ +.+||+++|.+++.....++++.....+.+++.. +...
T Consensus 179 ~~~~~~~~~~~-----~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~~~~~~~~~~~~l~~~~-~~~~~ 252 (549)
T 4ap3_A 179 TARWPHDGVDF-----TGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNVPLDDATRAEQKANY-AERRR 252 (549)
T ss_dssp GGGCCTTCCCC-----BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC----CHHHHHHHHHTH-HHHHH
T ss_pred ecccccccccc-----CCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcCCCCCHHHHHHHHhcc-HHHHH
Confidence 222 22222 4899999999999999999997 9999999999986433466666665555443200 0000
Q ss_pred ------------------------------------------------------------hhhhhccccc-CCCCCCCCC
Q psy1545 195 ------------------------------------------------------------TIFKRMRYNT-GGEKGPSLG 213 (454)
Q Consensus 195 ------------------------------------------------------------~~~~~~~~~~-~~~~~~~l~ 213 (454)
.+...++-.. ...+...+.
T Consensus 253 ~~r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~l~ 332 (549)
T 4ap3_A 253 LSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFWEEKIRAVVDDPAVAELLT 332 (549)
T ss_dssp HHHHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHHHHS
T ss_pred HHHhhccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCC
Confidence 0000000000 000111122
Q ss_pred Cc-cccc-------cccccCccCCceEEE--eCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCC
Q psy1545 214 PD-WHTQ-------VNLHGSSRDTKITIE--YSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHG 283 (454)
Q Consensus 214 ~~-~~~~-------~~~~~~l~~~gv~i~--~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~ 283 (454)
|+ +... -...+.+.+.+|+++ ....|+++..++ |.+++| ++++|.||+|||++++.. ++..
T Consensus 333 P~~~~~~~kR~~~~~~y~~al~~~~V~lvd~~~~~I~~it~~g-------v~~~dG-~~~~D~iI~ATGf~~~~~-~~~~ 403 (549)
T 4ap3_A 333 PKDHAIGAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMDETG-------IVTTGA-HYDLDMIVLATGFDAMTG-SLDK 403 (549)
T ss_dssp CSSCCBTTBCCEEESSTGGGGGSTTEEEEETTTSCEEEEETTE-------EEESSC-EEECSEEEECCCEEESST-TGGG
T ss_pred CCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCceEEeCCc-------EEeCCC-ceecCEEEECCccccccc-ccCc
Confidence 22 1111 012355677899998 246899998765 888999 999999999999999875 4443
Q ss_pred CCceecCCCceEeccccc-----------cccCceeec-CcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 284 TPFELAPDCGIGVNELMQ-----------TSISNVYAA-GDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 284 ~~l~~~~~g~i~vd~~~~-----------t~~~~Iya~-GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
+.+...+++.+++..+ .+.||.|.+ |--+... .......+..|++++++.|..
T Consensus 404 --~~i~g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~Gp~~~~~--------~~s~~~~~e~~~~~i~~~i~~ 468 (549)
T 4ap3_A 404 --LEIVGRGGRTLKETWAAGPRTYLGLGIDGFPNFFNLTGPGSPSV--------LANMVLHSELHVDWVADAIAY 468 (549)
T ss_dssp --SEEECGGGCBHHHHTTTSCCCBTTTBCTTCTTEEETTCTTSCGG--------GSCHHHHHHHHHHHHHHHHHH
T ss_pred --eeEECCCCcCHHHhhccchhhccccccCCCCcEEEEeCCCCCCc--------CccHHHHHHHHHHHHHHHHHH
Confidence 3343345566664422 367999986 3221100 112345577889998887754
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-24 Score=217.52 Aligned_cols=320 Identities=15% Similarity=0.173 Sum_probs=188.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccc------------c--------------cccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTK------------L--------------LSDI 55 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~------------~--------------~~~~ 55 (454)
++||+|||||++|+++|..|++. |.+|+|+|+++.+++.+....++. . +...
T Consensus 16 ~~dVvIIGaG~aGl~aA~~L~~~--G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~ 93 (542)
T 1w4x_A 16 EVDVLVVGAGFSGLYALYRLREL--GRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQ 93 (542)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBH
T ss_pred CCCEEEECccHHHHHHHHHHHhC--CCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCH
Confidence 47999999999999999999998 889999999877654432211110 0 0000
Q ss_pred chhhhHHHHHhc--C--cEEE-cceEEEEeCcc----cEEEeccCcEEEecEEEEecC--CCCCCCCCC--Cc--eeeee
Q psy1545 56 TVEETDANKFEG--L--CTVI-VDTVAAIDPRV----NCVITEKQNRIKYKTLCICTG--ASPRKIWYS--PH--VITIR 120 (454)
Q Consensus 56 ~~~~~~~~~~~~--~--i~~~-~~~v~~i~~~~----~~v~~~~g~~i~~d~lviAtG--~~p~~~~~~--~~--~~~~~ 120 (454)
.....++..+.+ + ..+. ..+|+.++.++ ..|++++|+++.||+||+||| +.|+.|+++ +. ...++
T Consensus 94 ~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~~~h 173 (542)
T 1w4x_A 94 PEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYH 173 (542)
T ss_dssp HHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCCSEEEE
T ss_pred HHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceEE
Confidence 001112222222 2 4444 44788776432 367777888999999999999 468887776 11 11122
Q ss_pred ccc---hHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc-ccccCCcchhhhHHHhhcc------
Q psy1545 121 DTD---SVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS-ATFLDPGAAEFFQDSINKT------ 188 (454)
Q Consensus 121 ~~~---~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~-~~~~d~~~~~~~~~~l~~~------ 188 (454)
+.. +... ..+|+++|||+|.+|+|++..++ +.+|+++.|.+.+. +. .+........+.+.+.
T Consensus 174 s~~~~~~~~~-----~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~-~~~~~~~~~~~~~~~~~p~l~~ 247 (542)
T 1w4x_A 174 TGNWPHEPVD-----FSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPA-RNAPLDPEFLADLKKRYAEFRE 247 (542)
T ss_dssp GGGCCSSCCC-----CBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEEC-CCCBCCHHHHHHHHTTHHHHHH
T ss_pred CCCCCCchhc-----cCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccC-CCCCCCHHHHHHHHhhCHHHHH
Confidence 221 1111 14899999999999999999986 89999999998773 43 3444333322222110
Q ss_pred ------C----CCC--------h---h---------------------------------hhhhhcccccCC-CCCCCCC
Q psy1545 189 ------N----TAK--------P---E---------------------------------TIFKRMRYNTGG-EKGPSLG 213 (454)
Q Consensus 189 ------~----~~~--------~---~---------------------------------~~~~~~~~~~~~-~~~~~l~ 213 (454)
. ..+ . . .....++-.... .+...+.
T Consensus 248 ~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 327 (542)
T 1w4x_A 248 ESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLV 327 (542)
T ss_dssp HHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHHS
T ss_pred HHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhcC
Confidence 0 000 0 0 000000000000 0000000
Q ss_pred C-ccc---cc----cccccCccCCceEEE--eCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCC
Q psy1545 214 P-DWH---TQ----VNLHGSSRDTKITIE--YSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHG 283 (454)
Q Consensus 214 ~-~~~---~~----~~~~~~l~~~gv~i~--~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~ 283 (454)
| ++. ++ -...+.+.+.+|+++ .+..|+++..++ |.++| +++++|.||+|||+++++. ++..
T Consensus 328 P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~g-------v~~~d-~~~~~D~ii~atG~~~~~~-~~~~ 398 (542)
T 1w4x_A 328 PKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRG-------VRTSE-REYELDSLVLATGFDALTG-ALFK 398 (542)
T ss_dssp CCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSSE-------EEESS-CEEECSEEEECCCCCCTTH-HHHT
T ss_pred CCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCCe-------EEeCC-eEEecCEEEEcCCcccccc-CcCc
Confidence 1 000 00 002233466789988 367899997654 78888 8999999999999999876 5554
Q ss_pred CCceecCCCceEeccccc-----------cccCceeec-CcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 284 TPFELAPDCGIGVNELMQ-----------TSISNVYAA-GDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 284 ~~l~~~~~g~i~vd~~~~-----------t~~~~Iya~-GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
. .+..++++.+++..+ ...||+|++ |+.+... .......|..|+++++++|....
T Consensus 399 ~--~i~g~~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~--------~~~~~~~~e~q~~~ia~~i~~~~ 465 (542)
T 1w4x_A 399 I--DIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSA--------LSNMLVSIEQHVEWVTDHIAYMF 465 (542)
T ss_dssp S--EEECGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGG--------GSCHHHHHHHHHHHHHHHHHHHH
T ss_pred e--eeECCCCCCHHHhhcCchheecccccCCCCceEEEcCCCCCcc--------cccHHHHHHHHHHHHHHHHHHHH
Confidence 3 332334455554222 356778777 7765321 11234678999999999988644
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-22 Score=176.70 Aligned_cols=156 Identities=16% Similarity=0.129 Sum_probs=123.2
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc--------c-----CCcchhhhHHHhhccCCCChhhhhhhcc
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF--------L-----DPGAAEFFQDSINKTNTAKPETIFKRMR 201 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~--------~-----d~~~~~~~~~~l~~~~~~~~~~~~~~~~ 201 (454)
+++|||||++|+++|..|. |.+|+++++.+..+.+. + ++++.+.+
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------------------- 62 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRL-------------------- 62 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHH--------------------
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHH--------------------
Confidence 7899999999999999996 99999999987655320 0 01111222
Q ss_pred cccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCccccc
Q psy1545 202 YNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQV 281 (454)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~ 281 (454)
.+.+++.||+++.+ ++++++.+++ .+.+.+++| ++++|.||+|+|.+|+. .
T Consensus 63 ---------------------~~~~~~~gv~v~~~-~v~~i~~~~~---~~~v~~~~g-~i~ad~vI~A~G~~~~~---~ 113 (180)
T 2ywl_A 63 ---------------------EAHARRYGAEVRPG-VVKGVRDMGG---VFEVETEEG-VEKAERLLLCTHKDPTL---P 113 (180)
T ss_dssp ---------------------HHHHHHTTCEEEEC-CCCEEEECSS---SEEEECSSC-EEEEEEEEECCTTCCHH---H
T ss_pred ---------------------HHHHHHcCCEEEeC-EEEEEEEcCC---EEEEEECCC-EEEECEEEECCCCCCCc---c
Confidence 22334589999999 9999987653 467888888 89999999999999853 3
Q ss_pred CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC
Q psy1545 282 HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351 (454)
Q Consensus 282 ~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 351 (454)
+..+++++ +|.|.||+++||+.|+|||+|||+..+ .++++.|..||+.||.||.+.+.++
T Consensus 114 ~~~g~~~~-~g~i~vd~~~~t~~~~i~a~GD~~~~~---------~~~~~~A~~~g~~aa~~i~~~~~~~ 173 (180)
T 2ywl_A 114 SLLGLTRR-GAYIDTDEGGRTSYPRVYAAGVARGKV---------PGHAIISAGDGAYVAVHLVSDLRGE 173 (180)
T ss_dssp HHHTCCEE-TTEECCCTTCBCSSTTEEECGGGGTCC---------SCCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred ccCCCCcc-CceEEeCCCCCcCCCCEEEeecccCcc---------hhhHHHHHHhHHHHHHHHHHHhhhc
Confidence 44567788 899999999999999999999999854 2378899999999999999865543
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=183.80 Aligned_cols=304 Identities=14% Similarity=0.110 Sum_probs=159.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcC------------CCCeEEEECCCCcccccccc--cc------ccccc----------
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLH------------PGESIGLVTPSGIVKAVTKT--VP------VTKLL---------- 52 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~------------~g~~v~lie~~~~~~~~~~~--~~------~~~~~---------- 52 (454)
+||||||+||+||++|..|.+.+ .+...+.+|+.+.+.+.... +. +.+.+
T Consensus 40 ~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~~ 119 (501)
T 4b63_A 40 HDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSSF 119 (501)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCTT
T ss_pred CcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCcc
Confidence 79999999999999999998741 23467888988765422111 00 00000
Q ss_pred ------------------cc-cchh---hhHHHHHhc--CcEE-EcceEEEEeCcc----------cEEEeccC-----c
Q psy1545 53 ------------------SD-ITVE---ETDANKFEG--LCTV-IVDTVAAIDPRV----------NCVITEKQ-----N 92 (454)
Q Consensus 53 ------------------~~-~~~~---~~~~~~~~~--~i~~-~~~~v~~i~~~~----------~~v~~~~g-----~ 92 (454)
.. +... ..+++++.+ +..+ +..+|+.+.+.. .+|++.++ +
T Consensus 120 sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~ 199 (501)
T 4b63_A 120 TFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEIS 199 (501)
T ss_dssp SHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEE
T ss_pred chHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEE
Confidence 00 0011 123333333 3333 344777765321 35655443 3
Q ss_pred EEEecEEEEecCCCCCCCCCC---CceeeeeccchHHHHHHH---hhcCCeEEEEcCchhHHHHHHHhc----CCcEEEE
Q psy1545 93 RIKYKTLCICTGASPRKIWYS---PHVITIRDTDSVAVLQEK---LKSAKKIVVIGNGGIATELVHELS----NVDIVWV 162 (454)
Q Consensus 93 ~i~~d~lviAtG~~p~~~~~~---~~~~~~~~~~~~~~l~~~---~~~~~~vvVvG~G~~g~e~a~~l~----g~~V~~i 162 (454)
++.+++||+|||..|..|... +.++ ++.+-....... -..+|+|+|||+|.+|+|++..|+ +.+|+|+
T Consensus 200 ~~~ar~vVlatG~~P~iP~~~~~~g~v~--Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~ 277 (501)
T 4b63_A 200 ARRTRKVVIAIGGTAKMPSGLPQDPRII--HSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLI 277 (501)
T ss_dssp EEEEEEEEECCCCEECCCTTSCCCTTEE--EGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEE
T ss_pred EEEeCEEEECcCCCCCCCCCCCCCccee--eccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEE
Confidence 689999999999998888765 3343 333322222211 125899999999999999999885 7899999
Q ss_pred EeCCCccccc--------cCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccc---cC-ccCCc
Q psy1545 163 VKDKHISATF--------LDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLH---GS-SRDTK 230 (454)
Q Consensus 163 ~~~~~~~~~~--------~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~-l~~~g 230 (454)
.|++.+.+.. +.|+..+.+.... ......+...........+...+..++...++.. .. .....
T Consensus 278 ~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~----~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~ 353 (501)
T 4b63_A 278 MRDSAMRPSDDSPFVNEIFNPERVDKFYSQS----AAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQ 353 (501)
T ss_dssp CSSSSCCBCCCCTTGGGGGSTTHHHHHHTSC----HHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCS
T ss_pred eCCCccccccccccchhhcCHHHHHHHHhCC----HHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccccc
Confidence 9998776532 1222211111000 0000001111111111111111111111100000 00 00112
Q ss_pred eEEEeCceEEEEEcCCCCccce------------EEEecCCcEEecCEEEEeeccCcCccccc-CCC-CceecCCCceEe
Q psy1545 231 ITIEYSCEVERIVDSEDDTCNA------------YVKLTNGHTHACDIVVSAIGVVPNSNIQV-HGT-PFELAPDCGIGV 296 (454)
Q Consensus 231 v~i~~~~~v~~i~~~~~~~~~~------------~v~~~~g~~~~~D~vi~a~G~~p~~~~~~-~~~-~l~~~~~g~i~v 296 (454)
..+.++..+..+..... ...+ .+.+.+|+++++|.||+|||++|+.+.++ ... .+..+.+|.+.|
T Consensus 354 ~~l~~~~~v~~~~~~~~-~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v 432 (501)
T 4b63_A 354 HRILPERKITRVEHHGP-QSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKP 432 (501)
T ss_dssp SEEECSEEEEEEECCSS-SSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCB
T ss_pred eeecCCcceeeeeecCC-CCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeee
Confidence 23444555554443221 1111 24566788999999999999999864222 221 244567788888
Q ss_pred ccccc--c------ccCceeecCcc
Q psy1545 297 NELMQ--T------SISNVYAAGDV 313 (454)
Q Consensus 297 d~~~~--t------~~~~Iya~GD~ 313 (454)
+..++ + ..++||+.|-+
T Consensus 433 ~rdy~~~~~~~~~~~~~~i~~qg~~ 457 (501)
T 4b63_A 433 HRDYRVEMDPSKVSSEAGIWLQGCN 457 (501)
T ss_dssp CTTSBBCCCTTTBCTTCEEEECSCC
T ss_pred CCCcEEeecCCccCCCceEEecCCC
Confidence 87655 2 24679999954
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.6e-19 Score=175.92 Aligned_cols=270 Identities=18% Similarity=0.128 Sum_probs=151.8
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccc----------c---------------------------
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKT----------V--------------------------- 46 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~----------~--------------------------- 46 (454)
||+|||||+||++||..|++. |.+|+|+|+.. .++...+ +
T Consensus 1 DVvVIG~G~AGl~aA~~la~~--G~~V~viek~~-~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~ 77 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRA--GKKVTLISKRI-DGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYV 77 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHT--TCCEEEECSST-TCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCC-CCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 799999999999999999997 89999999983 2211000 0
Q ss_pred ----------------cccc------cc--c---------ccchhhhHHHHHhc-CcEEEcc-eEEEEeCcccEE---Ee
Q psy1545 47 ----------------PVTK------LL--S---------DITVEETDANKFEG-LCTVIVD-TVAAIDPRVNCV---IT 88 (454)
Q Consensus 47 ----------------~~~~------~~--~---------~~~~~~~~~~~~~~-~i~~~~~-~v~~i~~~~~~v---~~ 88 (454)
.+.. .. . ...+.....+.+.+ +++++.+ .+ .+..+...+ .+
T Consensus 78 ~~~~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v 156 (472)
T 2e5v_A 78 TSEAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVT 156 (472)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEE
Confidence 0000 00 0 00011122233333 8998866 57 776544433 33
Q ss_pred c-cCcEEEecEEEEecCCCCCCCCCCCceeeeeccchHHHHHHH---h------hcCCeEEEEcCchhHHHHHHHhc--C
Q psy1545 89 E-KQNRIKYKTLCICTGASPRKIWYSPHVITIRDTDSVAVLQEK---L------KSAKKIVVIGNGGIATELVHELS--N 156 (454)
Q Consensus 89 ~-~g~~i~~d~lviAtG~~p~~~~~~~~~~~~~~~~~~~~l~~~---~------~~~~~vvVvG~G~~g~e~a~~l~--g 156 (454)
. ++..+.+|.+|+|||+.+..++...+.. ..+.+........ + +.....+++|+| +++++..+. |
T Consensus 157 ~~~~g~~~a~~VVlAtGg~~~~~~~~~~~~-~~tGdgi~~a~~aGa~~~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G 233 (472)
T 2e5v_A 157 EKRGLVEDVDKLVLATGGYSYLYEYSSTQS-TNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGE--VFLLTETLRGEG 233 (472)
T ss_dssp TTTEEECCCSEEEECCCCCGGGSSSBSSCT-TCSCHHHHHHHHTTCCEECTTCEEEEEEEECGGGC--CEECCTHHHHTT
T ss_pred EeCCCeEEeeeEEECCCCCcccCccccCCC-CCchHHHHHHHHcCCCEeCCcceEEEeEEEccCCC--ceeeehhhcCCc
Confidence 2 2235789999999999876655431100 1122221111110 0 001234455766 777766665 6
Q ss_pred CcEEEEEeCCCccccccCCcc--------hhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccC
Q psy1545 157 VDIVWVVKDKHISATFLDPGA--------AEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRD 228 (454)
Q Consensus 157 ~~V~~i~~~~~~~~~~~d~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 228 (454)
..+ +..++++|+++ ++++. +..+...+ ++
T Consensus 234 ~~~-v~~~g~rf~~~-~~~~~el~~rd~v~~~i~~~~-----------------------------------------~~ 270 (472)
T 2e5v_A 234 AQI-INENGERFLFN-YDKRGELAPRDILSRAIYIEM-----------------------------------------LK 270 (472)
T ss_dssp CEE-EETTCCCGGGG-TCTTGGGSCHHHHHHHHHHHH-----------------------------------------HH
T ss_pred eEE-ECCCCCCCCcc-CCcccCcCchhHHHHHHHHHH-----------------------------------------Hh
Confidence 666 77788898876 45543 11222222 11
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCCcEEe-cCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCce
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHA-CDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNV 307 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~-~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~I 307 (454)
.|. ++.+.. .-. . +. +.++ .+.++.+.|..|+ + +++..+......|+|.||+++||++|+|
T Consensus 271 ~~~-v~ld~~-----~~~----~----~~--~~~~~~~~~~~~~G~dp~-~-~i~v~p~~~~~~GGI~vd~~~~t~ipgL 332 (472)
T 2e5v_A 271 GHK-VFIDLS-----KIE----D----FE--RKFPVVAKYLARHGHNYK-V-KIPIFPAAHFVDGGIRVNIRGESNIVNL 332 (472)
T ss_dssp TCC-EEEECT-----TCT----T----HH--HHCHHHHHHHHHTTCCTT-S-CEECEEEEEEESCEEECCTTCBCSSBTE
T ss_pred CCc-EEEecc-----chH----H----HH--HHhHHHHHHHHHhCcCcc-c-ceEeehhhceeCCCeEECCCCccccCCE
Confidence 221 222211 000 0 00 1233 3667788899999 6 6665544445589999999999999999
Q ss_pred eecCcccccCCccccchhhccChHHHHHH----HHHHHhhhcC
Q psy1545 308 YAAGDVCTPSWDLAKQWFQMRLWTQAKHM----GTYAAKCMVG 346 (454)
Q Consensus 308 ya~GD~~~~~~~~~~~~~~~~~~~~A~~~----g~~aa~~i~~ 346 (454)
||+|||++...... .+++.+|..+ |+.|++++++
T Consensus 333 yAaGd~a~~~~hg~-----~rl~~~sl~~~~v~G~~a~~~~a~ 370 (472)
T 2e5v_A 333 YAIGEVSDSGLHGA-----NRLASNSLLEGLVFGINLPRYVDS 370 (472)
T ss_dssp EECGGGEECSSSTT-----SCCTTHHHHHHHHHHHHGGGTTTS
T ss_pred EecchhcccccCCC-----CCCCcccHHHHHHHHHHHHHHHHh
Confidence 99999988433222 2455556655 5555555554
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-14 Score=129.76 Aligned_cols=176 Identities=11% Similarity=0.118 Sum_probs=103.9
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcc----hhhhHHHhhccCCCChhhhhhhcccccCCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGA----AEFFQDSINKTNTAKPETIFKRMRYNTGGEKG 209 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (454)
.+++|||||+.|+++|..|+ |.+|+++++..........+.. ...+.+.+. ...+
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~-------------------d~~g 64 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAY-------------------DPKD 64 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHC-------------------CTTC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhc-------------------cCCC
Confidence 47999999999999999996 9999999987321110001100 000111110 0000
Q ss_pred CCCCCccccccccccCccCC-ceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCccc---------
Q psy1545 210 PSLGPDWHTQVNLHGSSRDT-KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNI--------- 279 (454)
Q Consensus 210 ~~l~~~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~--------- 279 (454)
+ -...+.. .+.+.+++. |++++ ++.|+++..+++ ....+.+++|+++++|.||+|+|..++...
T Consensus 65 ~-~~~~~~~--~l~~~~~~~~gv~i~-~~~v~~i~~~~~--~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~ 138 (232)
T 2cul_A 65 E-RVWAFHA--RAKYLLEGLRPLHLF-QATATGLLLEGN--RVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEA 138 (232)
T ss_dssp C-CHHHHHH--HHHHHHHTCTTEEEE-ECCEEEEEEETT--EEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESE
T ss_pred C-CHHHHHH--HHHHHHHcCCCcEEE-EeEEEEEEEeCC--EEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCC
Confidence 0 0001111 123334555 99999 468999986542 234677888888999999999999654320
Q ss_pred -------------ccCCCCceecCCC--------c-------eEecc------cc-ccccCceeecCcccccCCccccch
Q psy1545 280 -------------QVHGTPFELAPDC--------G-------IGVNE------LM-QTSISNVYAAGDVCTPSWDLAKQW 324 (454)
Q Consensus 280 -------------~~~~~~l~~~~~g--------~-------i~vd~------~~-~t~~~~Iya~GD~~~~~~~~~~~~ 324 (454)
.+...++.++... . ..+.. .+ +|++|+|||+|||+ ..
T Consensus 139 g~~g~~~~~~l~~~l~~~g~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~------- 210 (232)
T 2cul_A 139 GRLSEASYPDLLEDLSRLGFRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-RE------- 210 (232)
T ss_dssp EETTEECCSHHHHHHHHTTCCEEEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SC-------
T ss_pred CCCcccchhhhCHHHHhCCCeEEccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cC-------
Confidence 0111222221111 0 00110 11 27899999999999 43
Q ss_pred hhccChHHHHHHHHHHHhhhcCC
Q psy1545 325 FQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 325 ~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
..+..|+.||+.+|.+|...
T Consensus 211 ---g~~~~~~~~g~~~a~~i~~~ 230 (232)
T 2cul_A 211 ---GDYARMSEEGKRLAEHLLHE 230 (232)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHH
T ss_pred ---ccHHHHHHHHHHHHHHHHhh
Confidence 36667899999999999864
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-15 Score=147.91 Aligned_cols=36 Identities=33% Similarity=0.517 Sum_probs=33.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||+|||||++|+++|..|++. |.+|+|+|+.+..
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~~--G~~V~vlEk~~~~ 39 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAKL--GKSVTVFDNGKKI 39 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred CCCEEEECCcHHHHHHHHHHHhC--CCCEEEEeCCCCC
Confidence 48999999999999999999998 8999999998754
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-12 Score=129.78 Aligned_cols=84 Identities=18% Similarity=0.197 Sum_probs=64.0
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeec--------cCcCcccccCCCCcee-cCCCceEec
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIG--------VVPNSNIQVHGTPFEL-APDCGIGVN 297 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G--------~~p~~~~~~~~~~l~~-~~~g~i~vd 297 (454)
++.| +|++++.|++|+.+++ .+.|.+++|+++++|.||+|+| +.|+.+ ......+.. .....++|+
T Consensus 215 ~~~g-~i~~~~~V~~i~~~~~---~v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~-~~~~~~~~~~~~~~~~kv~ 289 (431)
T 3k7m_X 215 QEIP-EIRLQTVVTGIDQSGD---VVNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALP-ERRRSVIEEGHGGQGLKIL 289 (431)
T ss_dssp TTCS-CEESSCCEEEEECSSS---SEEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCC-HHHHHHHHHCCCCCEEEEE
T ss_pred hhCC-ceEeCCEEEEEEEcCC---eEEEEECCCCEEEeCEEEEecCcchHhheeeCCCCC-HHHHHHHHhCCCcceEEEE
Confidence 3467 9999999999987653 4678888898899999999999 788765 222111111 123459999
Q ss_pred cccccccCceeecCcccc
Q psy1545 298 ELMQTSISNVYAAGDVCT 315 (454)
Q Consensus 298 ~~~~t~~~~Iya~GD~~~ 315 (454)
..++|+.+++|+.||+..
T Consensus 290 ~~~~~~~~~i~~~~d~~~ 307 (431)
T 3k7m_X 290 IHVRGAEAGIECVGDGIF 307 (431)
T ss_dssp EEEESCCTTEEEEBSSSS
T ss_pred EEECCCCcCceEcCCCCE
Confidence 999999999999999843
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-10 Score=99.21 Aligned_cols=103 Identities=18% Similarity=0.110 Sum_probs=71.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc----cccccccccccccchhhhHHHHHhc-CcEEEcceEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV----TKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVA 77 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~ 77 (454)
+|++|||||++|+.+|..|++. +.+|+|+|+.+..... .+++.++......++.....+.+.+ +++++.++++
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~--g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~~v~ 79 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARA--GLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPGVVK 79 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeCEEE
Confidence 7999999999999999999998 8999999998632110 0011111111122333334445555 8998866888
Q ss_pred EEeCcc--cEEEeccCcEEEecEEEEecCCCCC
Q psy1545 78 AIDPRV--NCVITEKQNRIKYKTLCICTGASPR 108 (454)
Q Consensus 78 ~i~~~~--~~v~~~~g~~i~~d~lviAtG~~p~ 108 (454)
.++.+. ..+.+++| ++.+|.+|+|+|.+|.
T Consensus 80 ~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~ 111 (180)
T 2ywl_A 80 GVRDMGGVFEVETEEG-VEKAERLLLCTHKDPT 111 (180)
T ss_dssp EEEECSSSEEEECSSC-EEEEEEEEECCTTCCH
T ss_pred EEEEcCCEEEEEECCC-EEEECEEEECCCCCCC
Confidence 887543 35677677 8999999999999874
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.6e-10 Score=106.46 Aligned_cols=194 Identities=11% Similarity=0.047 Sum_probs=109.5
Q ss_pred CeEEEEcCchhHHHHHHHhc---CCcEEEEEeCCCccccccC-Ccc-h-----hhhHHHhhccCCCChhhhhhhcccccC
Q psy1545 136 KKIVVIGNGGIATELVHELS---NVDIVWVVKDKHISATFLD-PGA-A-----EFFQDSINKTNTAKPETIFKRMRYNTG 205 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~---g~~V~~i~~~~~~~~~~~d-~~~-~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~ 205 (454)
.+++|||||++|+.+|..|+ |.+|+++++.+.+...... ... . ....+.+.+ ..+.+.
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~------------~G~~~~ 107 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDE------------IGVAYD 107 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHH------------HTCCCE
T ss_pred cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHH------------cCCCcc
Confidence 47999999999999999884 7899999998754321000 000 0 000111110 000000
Q ss_pred CCCCCC----CCCccccccccccCc-cCCceEEEeCceEEEEEcCCCCccceEEEec---------CC-----cEEecCE
Q psy1545 206 GEKGPS----LGPDWHTQVNLHGSS-RDTKITIEYSCEVERIVDSEDDTCNAYVKLT---------NG-----HTHACDI 266 (454)
Q Consensus 206 ~~~~~~----l~~~~~~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---------~g-----~~~~~D~ 266 (454)
.. ... -..++.. .+.+.+ ++.|+++++++.|+++..+++ ....+.+. +| .++++|.
T Consensus 108 ~~-~~~~~~~~~~~~~~--~l~~~~~~~~gv~i~~~~~V~~i~~~~~--~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~ 182 (284)
T 1rp0_A 108 EQ-DTYVVVKHAALFTS--TIMSKLLARPNVKLFNAVAAEDLIVKGN--RVGGVVTNWALVAQNHHTQSCMDPNVMEAKI 182 (284)
T ss_dssp EC-SSEEEESCHHHHHH--HHHHHHHTSTTEEEEETEEEEEEEEETT--EEEEEEEEEHHHHTCTTTSSCCCCEEEEEEE
T ss_pred cC-CCEEEecCHHHHHH--HHHHHHHhcCCCEEEcCcEEEEEEecCC--eEEEEEEeccccccccCccccCceEEEECCE
Confidence 00 000 0001111 122333 347999999999999986542 22234432 32 6799999
Q ss_pred EEEeeccCcCcccc----cCCCC--ceecCCCceEecc-------ccccccCceeecCcccccCCccccchhhccChHHH
Q psy1545 267 VVSAIGVVPNSNIQ----VHGTP--FELAPDCGIGVNE-------LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQA 333 (454)
Q Consensus 267 vi~a~G~~p~~~~~----~~~~~--l~~~~~g~i~vd~-------~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A 333 (454)
||+|+|..++...+ +...+ +.+....++.+|. ..+++.|++|++||++.... . .+...+.+..+
T Consensus 183 VV~AtG~~s~~~~~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~~-g--~~~~gp~~~~~ 259 (284)
T 1rp0_A 183 VVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEID-G--APRMGPTFGAM 259 (284)
T ss_dssp EEECCCSSSTTTTHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHHHHHH-T--CEECCSCCHHH
T ss_pred EEECCCCchHHHHHHHHHhhhccCCCCcCCcCCchhhhhhHHHhhccccccCCEEEEeeehhhhc-C--CCCcChHHHHH
Confidence 99999988764311 11101 1122233344442 34678899999999875311 1 11123457788
Q ss_pred HHHHHHHHhhhcCCCC
Q psy1545 334 KHMGTYAAKCMVGAVK 349 (454)
Q Consensus 334 ~~~g~~aa~~i~~~~~ 349 (454)
..+|+.+|.++...+.
T Consensus 260 ~~sG~~~a~~i~~~l~ 275 (284)
T 1rp0_A 260 MISGQKAGQLALKALG 275 (284)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHhh
Confidence 9999999999987664
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.6e-10 Score=116.39 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=32.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||||||||+||++||..|++.+++.+|+|||+.+.
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~ 41 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYP 41 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCG
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence 4799999999999999999999833399999999754
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=99.04 E-value=8.4e-10 Score=112.65 Aligned_cols=141 Identities=15% Similarity=0.156 Sum_probs=87.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC-cccccccccc---------------ccc---------------
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG-IVKAVTKTVP---------------VTK--------------- 50 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~-~~~~~~~~~~---------------~~~--------------- 50 (454)
++||||||||+||++||..|++. |.+|+|||+.+ ..+.....+. +..
T Consensus 28 ~yDVIVIGgG~AGl~AAlaLAr~--G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~ 105 (651)
T 3ces_A 28 PFDVIIIGGGHAGTEAAMAAARM--GQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRI 105 (651)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEE
T ss_pred cCCEEEECChHHHHHHHHHHHhC--CCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhh
Confidence 47999999999999999999998 99999999974 1211000000 000
Q ss_pred -------ccc----cc---chhhhHHHHHhc--CcEEEcceEEEEeCccc---EEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 51 -------LLS----DI---TVEETDANKFEG--LCTVIVDTVAAIDPRVN---CVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 51 -------~~~----~~---~~~~~~~~~~~~--~i~~~~~~v~~i~~~~~---~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
... .. .+.....+.+.+ +++++.++|+.+..+.. .|.+.+|..+.+|.||+|||+.+..+.
T Consensus 106 l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~~~ 185 (651)
T 3ces_A 106 LNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKI 185 (651)
T ss_dssp ESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTCCEE
T ss_pred hhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCccCcc
Confidence 000 00 011122233443 78888889999864433 456667888999999999999876654
Q ss_pred CCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEE
Q psy1545 112 YSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVV 163 (454)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~ 163 (454)
+++.. + . .+.+ +| |.++++++..|. |.+|+.+.
T Consensus 186 i~G~~----~------~-----~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~ 220 (651)
T 3ces_A 186 HIGLD----N------Y-----SGGR---AG-DPPSIPLSRRLRELPLRVGRLK 220 (651)
T ss_dssp ECC--------------------------------CCHHHHHHHTTTCCEEEEC
T ss_pred ccCcc----c------C-----CCCC---cc-chhhhHHHHHHHhcCCeEEEec
Confidence 43110 0 0 1333 46 788999999886 99999885
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-09 Score=98.46 Aligned_cols=105 Identities=21% Similarity=0.194 Sum_probs=69.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccc-----cccc---------cchhhhHHHHHhc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTK-----LLSD---------ITVEETDANKFEG 67 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~-----~~~~---------~~~~~~~~~~~~~ 67 (454)
++||+|||||++|+++|..|++. +.+|+|||+.....+.+..+.... .... ..+.....+.+.+
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~--g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~ 80 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQK--GVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEG 80 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHT
T ss_pred CCCEEEECcCHHHHHHHHHHHHC--CCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHc
Confidence 68999999999999999999998 899999999732211111111100 0000 0112222333443
Q ss_pred --CcEEEcceEEEEeCccc---EEEeccCcEEEecEEEEecCCCCC
Q psy1545 68 --LCTVIVDTVAAIDPRVN---CVITEKQNRIKYKTLCICTGASPR 108 (454)
Q Consensus 68 --~i~~~~~~v~~i~~~~~---~v~~~~g~~i~~d~lviAtG~~p~ 108 (454)
+++++..+|+.+..+.. .|.+.+|+++++|++|+|+|....
T Consensus 81 ~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~ 126 (232)
T 2cul_A 81 LRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG 126 (232)
T ss_dssp CTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred CCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence 78888778888875443 356667878999999999998653
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.4e-09 Score=106.99 Aligned_cols=142 Identities=17% Similarity=0.178 Sum_probs=90.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC-cccccccccc---------------ccc---------------
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG-IVKAVTKTVP---------------VTK--------------- 50 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~-~~~~~~~~~~---------------~~~--------------- 50 (454)
++||+|||||+||++||..|++. |.+|+|||+.. ..+.....+. +..
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr~--G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~ 104 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAARM--GAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKM 104 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceee
Confidence 37999999999999999999998 89999999974 2211000000 000
Q ss_pred -------ccc-------ccchhhhHHHHHhc--CcEEEcceEEEEeCccc---EEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 51 -------LLS-------DITVEETDANKFEG--LCTVIVDTVAAIDPRVN---CVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 51 -------~~~-------~~~~~~~~~~~~~~--~i~~~~~~v~~i~~~~~---~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
... ...+.....+.+.+ +++++.++|+.+..+.. .|.+.+|..+.+|.||+|||+.+..+.
T Consensus 105 l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~~~ 184 (637)
T 2zxi_A 105 LNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVI 184 (637)
T ss_dssp ESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBTCEE
T ss_pred cccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCccCce
Confidence 000 00011122233433 78988889998865433 366778889999999999999876654
Q ss_pred CCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEe
Q psy1545 112 YSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVK 164 (454)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~ 164 (454)
++.... . .+.+ .|+.++++++..|. |.+++.+.+
T Consensus 185 ~~G~~~-~--------------~~Gr----~G~~~A~~la~~L~~lG~~v~~l~t 220 (637)
T 2zxi_A 185 YIGDKM-I--------------PGGR----LGEPRSEGLSDFYRRFDFPLIRFKT 220 (637)
T ss_dssp EETTEE-E--------------ECSB----TTBCCBCTHHHHHHHTTCCCEEEEE
T ss_pred ecccee-c--------------CCCC----CCchhHHHHHHHHHhcCCceEEecC
Confidence 431111 0 0222 23567888888775 888777654
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.6e-09 Score=101.66 Aligned_cols=103 Identities=12% Similarity=0.203 Sum_probs=67.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc--------cccc-------c----cccc----c-----
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT--------KTVP-------V----TKLL----S----- 53 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~--------~~~~-------~----~~~~----~----- 53 (454)
++||+|||||++|++||..|++. |.+|+|+|+.+..+... +... + +... .
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~--G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~ 104 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKR--GRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQ 104 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHH
Confidence 47999999999999999999998 89999999987643211 0000 0 0000 0
Q ss_pred --------------------------ccchhhhHHHHHhc-CcEEEcc-eEEEEeCccc--EEEeccCcEEEecEEEEec
Q psy1545 54 --------------------------DITVEETDANKFEG-LCTVIVD-TVAAIDPRVN--CVITEKQNRIKYKTLCICT 103 (454)
Q Consensus 54 --------------------------~~~~~~~~~~~~~~-~i~~~~~-~v~~i~~~~~--~v~~~~g~~i~~d~lviAt 103 (454)
..++.....+.+.+ +++++.+ +|+.+..+.. .|.+.+| .+.+|+||+||
T Consensus 105 ~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIlAt 183 (417)
T 3v76_A 105 DFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASLVVAS 183 (417)
T ss_dssp HHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEEEECC
T ss_pred HHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEECC
Confidence 00111122233334 8998754 8888865443 5666566 89999999999
Q ss_pred CCCC
Q psy1545 104 GASP 107 (454)
Q Consensus 104 G~~p 107 (454)
|..+
T Consensus 184 G~~S 187 (417)
T 3v76_A 184 GGKS 187 (417)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 9875
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=9e-09 Score=100.09 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=70.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc---ccc----------cc-------------------c
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT---KTV----------PV-------------------T 49 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~---~~~----------~~-------------------~ 49 (454)
++||+|||||++|+++|..|++. |.+|+|+|+.+...... ... .+ .
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~--G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g 88 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQN--GWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHN 88 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETT
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCC
Confidence 37999999999999999999998 89999999987653100 000 00 0
Q ss_pred c--------cccc-----cchhhhHHHHHhc-CcEEEcc-eEEEEeCcccEEEeccCcEEEecEEEEecCCCC
Q psy1545 50 K--------LLSD-----ITVEETDANKFEG-LCTVIVD-TVAAIDPRVNCVITEKQNRIKYKTLCICTGASP 107 (454)
Q Consensus 50 ~--------~~~~-----~~~~~~~~~~~~~-~i~~~~~-~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p 107 (454)
. .... ..+.....+.+.+ +++++.+ +|+.++.+. .|++.+|+++.+|.||.|+|...
T Consensus 89 ~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~v~~~~g~~~~ad~vV~AdG~~s 160 (379)
T 3alj_A 89 KSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVG-RLTLQTGEVLEADLIVGADGVGS 160 (379)
T ss_dssp EEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTT-EEEETTSCEEECSEEEECCCTTC
T ss_pred ceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCC-EEEECCCCEEEcCEEEECCCccH
Confidence 0 0000 0111122233333 8998865 888888755 78888888999999999999864
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.84 E-value=2e-08 Score=93.55 Aligned_cols=108 Identities=16% Similarity=0.096 Sum_probs=68.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc-ccccc-c----------------cccc----------c
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV-TKTVP-V----------------TKLL----------S 53 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~-~~~~~-~----------------~~~~----------~ 53 (454)
++||+|||||++|+++|..|++. ++.+|+|+|+.+..++. +.... + ...+ .
T Consensus 39 ~~dVvIIGgG~aGl~aA~~la~~-~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 117 (284)
T 1rp0_A 39 ETDVVVVGAGSAGLSAAYEISKN-PNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKH 117 (284)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTS-TTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred ccCEEEECccHHHHHHHHHHHHc-CCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecC
Confidence 46999999999999999999984 38899999998765321 11000 0 0000 0
Q ss_pred ccchhhhHHHHHhc--CcEEEcc-eEEEEeCcccE---EEec---------cC-----cEEEecEEEEecCCCCCCC
Q psy1545 54 DITVEETDANKFEG--LCTVIVD-TVAAIDPRVNC---VITE---------KQ-----NRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 54 ~~~~~~~~~~~~~~--~i~~~~~-~v~~i~~~~~~---v~~~---------~g-----~~i~~d~lviAtG~~p~~~ 110 (454)
...+.....+.+.+ +++++.+ +|+.+..+... +.+. ++ ..+++|.+|+|+|..+...
T Consensus 118 ~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~ 194 (284)
T 1rp0_A 118 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFG 194 (284)
T ss_dssp HHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTT
T ss_pred HHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHH
Confidence 01111223334433 8998755 88888754432 2331 22 5799999999999876543
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-09 Score=109.84 Aligned_cols=174 Identities=14% Similarity=0.100 Sum_probs=98.5
Q ss_pred EecEEEEecCCCCCCCCCC----CceeeeeccchHHHH---------HHH--hhcCCeEEEEcCchhHHHHHHHhc--CC
Q psy1545 95 KYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVL---------QEK--LKSAKKIVVIGNGGIATELVHELS--NV 157 (454)
Q Consensus 95 ~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l---------~~~--~~~~~~vvVvG~G~~g~e~a~~l~--g~ 157 (454)
.||++++++|++|+.+++. +.+.......+..++ ... .....+|+|||||+.|+.+|..|+ |.
T Consensus 37 ~~~~l~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~~G~ 116 (497)
T 2bry_A 37 SFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLGA 116 (497)
T ss_dssp HHHHHHHHHTCCTTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCCCCCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHHCCC
Confidence 4788999999998776654 333333344444444 111 123578999999999999999986 99
Q ss_pred cEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCC-CccccccccccCccCCceEEEeC
Q psy1545 158 DIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLG-PDWHTQVNLHGSSRDTKITIEYS 236 (454)
Q Consensus 158 ~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~l~~~gv~i~~~ 236 (454)
+|+++++.+.+..... ........+.+... .+...........+ ..+. .++.. .+.+.+++.||+++++
T Consensus 117 ~V~liEk~~~~g~~~~-~~~~~~~~~~l~~~------g~~~~~~~~~~~~~-~~~~~~~l~~--~L~~~~~~~gv~v~~~ 186 (497)
T 2bry_A 117 RVVLVEKRIKFSRHNV-LHLWPFTIHDLRAL------GAKKFYGRFCTGTL-DHISIRQLQL--LLLKVALLLGVEIHWG 186 (497)
T ss_dssp EEEEEESCSSCCCCCE-EECCHHHHHHHHTT------THHHHCTTTTCTTC-CEEEHHHHHH--HHHHHHHHTTCEEEES
T ss_pred eEEEEEeccccCCCCc-ccCChhHHHHHHHc------CCcccccccccccc-ccCCHHHHHH--HHHHHHHhCCCEEEeC
Confidence 9999998876421100 00011111111110 00000000000000 0000 01111 1233445579999999
Q ss_pred ceEEEEEcCCCCccceEEEe--c-CC--cEEecCEEEEeeccCcCcc
Q psy1545 237 CEVERIVDSEDDTCNAYVKL--T-NG--HTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 237 ~~v~~i~~~~~~~~~~~v~~--~-~g--~~~~~D~vi~a~G~~p~~~ 278 (454)
+.|+++..+++.+..+.+.+ . +| .++.+|.||.|+|..+...
T Consensus 187 ~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r 233 (497)
T 2bry_A 187 VKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPE 233 (497)
T ss_dssp CEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCT
T ss_pred CEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccc
Confidence 99999986421122456666 3 55 5799999999999988654
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.8e-08 Score=100.27 Aligned_cols=106 Identities=16% Similarity=0.265 Sum_probs=69.1
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc--------cccc------c----ccc--c-----c---
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV--------TKTV------P----VTK--L-----L--- 52 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~--------~~~~------~----~~~--~-----~--- 52 (454)
|++||+|||||++|+++|..|++. |.+|+|+|+.+..+.. .+.. . +.. . +
T Consensus 25 ~~~dVvIIGgG~aGl~aA~~la~~--G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (447)
T 2i0z_A 25 MHYDVIVIGGGPSGLMAAIGAAEE--GANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIF 102 (447)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHS
T ss_pred CCCCEEEECCcHHHHHHHHHHHHC--CCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhc
Confidence 568999999999999999999998 8999999998754210 0000 0 000 0 0
Q ss_pred c-------------c----------------cchhhhHHHHHhc-CcEEEc-ceEEEEeCccc---EEEeccCcEEEecE
Q psy1545 53 S-------------D----------------ITVEETDANKFEG-LCTVIV-DTVAAIDPRVN---CVITEKQNRIKYKT 98 (454)
Q Consensus 53 ~-------------~----------------~~~~~~~~~~~~~-~i~~~~-~~v~~i~~~~~---~v~~~~g~~i~~d~ 98 (454)
. . ..+.....+.+.+ +++++. .+|+.+..+.. .|.+.+|+.+++|.
T Consensus 103 ~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~ 182 (447)
T 2i0z_A 103 NNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNH 182 (447)
T ss_dssp CHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSC
T ss_pred CHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCE
Confidence 0 0 0011112223333 899875 48888864332 46677777799999
Q ss_pred EEEecCCCCC
Q psy1545 99 LCICTGASPR 108 (454)
Q Consensus 99 lviAtG~~p~ 108 (454)
||+|||....
T Consensus 183 VVlAtGg~s~ 192 (447)
T 2i0z_A 183 VVIAVGGKSV 192 (447)
T ss_dssp EEECCCCSSS
T ss_pred EEECCCCCcC
Confidence 9999998763
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=98.80 E-value=3.7e-10 Score=116.69 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=43.7
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEec---CC--cEEecCEEEEeeccCcCcccccCCCCc
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLT---NG--HTHACDIVVSAIGVVPNSNIQVHGTPF 286 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l 286 (454)
++.|+++++++.|+++..++++.....|++. +| .++++|.||+|+|..|+.. ++..+|+
T Consensus 271 ~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~-lL~~sgi 334 (623)
T 3pl8_A 271 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQ-LLVNSGF 334 (623)
T ss_dssp EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHH-HHHTTTS
T ss_pred cCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHH-HHHhcCC
Confidence 4469999999999999865421234556554 35 3689999999999999988 6665554
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.2e-08 Score=102.19 Aligned_cols=143 Identities=13% Similarity=0.093 Sum_probs=88.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC-cccccccccc---------------ccc---------------
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG-IVKAVTKTVP---------------VTK--------------- 50 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~-~~~~~~~~~~---------------~~~--------------- 50 (454)
++||+|||||+||++||..|++. |.+|+|+|+.+ ..+.....+. +..
T Consensus 21 ~yDVIVIGgG~AGl~AAlaLAr~--G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~ 98 (641)
T 3cp8_A 21 MYDVIVVGAGHAGCEAALAVARG--GLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRM 98 (641)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEE
T ss_pred cCCEEEECccHHHHHHHHHHHHC--CCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhh
Confidence 58999999999999999999998 89999999974 1211100000 000
Q ss_pred -------cc-------cccchhhhHHHHHhc--CcEEEcceEEEEeCcccE---EEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 51 -------LL-------SDITVEETDANKFEG--LCTVIVDTVAAIDPRVNC---VITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 51 -------~~-------~~~~~~~~~~~~~~~--~i~~~~~~v~~i~~~~~~---v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
.. ....+.....+.+.+ +++++.++|+.+..+... |.+.+|..+.+|.+|+|||+.+..+.
T Consensus 99 l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~~~i 178 (641)
T 3cp8_A 99 LNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLNGLI 178 (641)
T ss_dssp ECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBTCEE
T ss_pred cccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCCccc
Confidence 00 000111222333443 889888889887654432 56677889999999999999875433
Q ss_pred CCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEe
Q psy1545 112 YSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVK 164 (454)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~ 164 (454)
+.+.. .. .+.+++ |+.++++++..|. |.+|..+..
T Consensus 179 ~~G~~-~~--------------~~g~~v---G~~~a~~la~~L~~~G~kv~~l~t 215 (641)
T 3cp8_A 179 HIGMD-HF--------------PGGRST---AEPPVEGLTESLASLGFSFGRLKT 215 (641)
T ss_dssp EETTE-EE--------------ECSSST---TSCCBCSHHHHHHHTTCCEEEEEE
T ss_pred eeeee-ee--------------cccccc---CCchhhhhHHHHHhCCceEEeecC
Confidence 21110 00 012221 3567788887775 888876643
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-08 Score=102.25 Aligned_cols=107 Identities=13% Similarity=0.026 Sum_probs=70.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccc---c--------------------ccccchh
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTK---L--------------------LSDITVE 58 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~---~--------------------~~~~~~~ 58 (454)
.+||+|||||++|+++|..|++. |.+|+|||+.+..+.+......+. . +....+.
T Consensus 92 ~~dVvIVGgG~aGl~aA~~La~~--G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~ 169 (497)
T 2bry_A 92 NTKCLVVGAGPCGLRAAVELALL--GARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQ 169 (497)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHH
T ss_pred CCCEEEECccHHHHHHHHHHHHC--CCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHH
Confidence 47999999999999999999998 899999999876543211100000 0 0001111
Q ss_pred hhHHHHHhc-CcEEEcc-eEEEEeCc-----ccEEEe--c-cC--cEEEecEEEEecCCCCCCC
Q psy1545 59 ETDANKFEG-LCTVIVD-TVAAIDPR-----VNCVIT--E-KQ--NRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 59 ~~~~~~~~~-~i~~~~~-~v~~i~~~-----~~~v~~--~-~g--~~i~~d~lviAtG~~p~~~ 110 (454)
....+.+.+ +++++.+ +|+.+..+ ...|.+ . +| .++.+|+||+|+|..+...
T Consensus 170 ~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r 233 (497)
T 2bry_A 170 LLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPE 233 (497)
T ss_dssp HHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCT
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccc
Confidence 222333344 8998755 88888753 235655 3 45 4699999999999976553
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.5e-08 Score=100.87 Aligned_cols=105 Identities=18% Similarity=0.136 Sum_probs=69.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc--------------------------cccccc--c----cc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK--------------------------AVTKTV--P----VT 49 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~--------------------------~~~~~~--~----~~ 49 (454)
++||+|||||++|+++|+.|++. |.+|+|+|+.+... +...+. . +.
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~--G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~ 184 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQM--GFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHT--TCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHC--CCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEec
Confidence 47999999999999999999997 89999999986431 000000 0 00
Q ss_pred c--c-------------cc---------c------cchhhhHHHHHhc-CcEEEcc-eEEEEeCccc---EEEeccCcEE
Q psy1545 50 K--L-------------LS---------D------ITVEETDANKFEG-LCTVIVD-TVAAIDPRVN---CVITEKQNRI 94 (454)
Q Consensus 50 ~--~-------------~~---------~------~~~~~~~~~~~~~-~i~~~~~-~v~~i~~~~~---~v~~~~g~~i 94 (454)
. . .. . ..+.....+.+.+ +++++.+ +|+.+..+.. .|.+.+|+++
T Consensus 185 ~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i 264 (549)
T 3nlc_A 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEI 264 (549)
T ss_dssp CTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEE
T ss_pred cccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEE
Confidence 0 0 00 0 0011112233334 8999865 8888865443 3677788899
Q ss_pred EecEEEEecCCCCC
Q psy1545 95 KYKTLCICTGASPR 108 (454)
Q Consensus 95 ~~d~lviAtG~~p~ 108 (454)
.+|.||+|+|..++
T Consensus 265 ~Ad~VVlA~G~~s~ 278 (549)
T 3nlc_A 265 KSRHVVLAVGHSAR 278 (549)
T ss_dssp ECSCEEECCCTTCH
T ss_pred ECCEEEECCCCChh
Confidence 99999999999774
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.9e-08 Score=95.71 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=33.3
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
=+|||+||||||||+++|+.|++. |++|+|+|+.+..
T Consensus 3 e~yDViIVGaGpaGl~~A~~La~~--G~~V~v~Er~~~~ 39 (397)
T 3oz2_A 3 ETYDVLVVGGGPGGSTAARYAAKY--GLKTLMIEKRPEI 39 (397)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSST
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCC
Confidence 059999999999999999999998 9999999997654
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.69 E-value=3e-07 Score=88.57 Aligned_cols=48 Identities=8% Similarity=0.143 Sum_probs=39.1
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEEEeeccCcC
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPN 276 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi~a~G~~p~ 276 (454)
++.|++++++++|+++..+++ ..+.+.+++| .++.+|.||+|+|....
T Consensus 161 ~~~Gv~i~~~~~v~~i~~~~~--~~~~v~~~~g~~~~~~a~~VV~A~G~~s~ 210 (369)
T 3dme_A 161 ESDGAQLVFHTPLIAGRVRPE--GGFELDFGGAEPMTLSCRVLINAAGLHAP 210 (369)
T ss_dssp HHTTCEEECSCCEEEEEECTT--SSEEEEECTTSCEEEEEEEEEECCGGGHH
T ss_pred HHCCCEEECCCEEEEEEEcCC--ceEEEEECCCceeEEEeCEEEECCCcchH
Confidence 348999999999999987653 2366788887 58999999999998753
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.69 E-value=8.9e-08 Score=93.50 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=69.0
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc------c-ccccc--------------------c--c--c-
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV------K-AVTKT--------------------V--P--V- 48 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~------~-~~~~~--------------------~--~--~- 48 (454)
|++||+|||||++|+++|..|++. |.+|+|+|+.+.. . +.... + . +
T Consensus 1 m~~dV~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~ 78 (394)
T 1k0i_A 1 MKTQVAIIGAGPSGLLLGQLLHKA--GIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIA 78 (394)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHH--TCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEE
T ss_pred CCccEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEE
Confidence 789999999999999999999998 8999999998641 0 00000 0 0 0
Q ss_pred -ccc---c--------------cccchhhhHHHHHhc-CcEEEcc-eEEEEeCc---ccEEEe-ccCc--EEEecEEEEe
Q psy1545 49 -TKL---L--------------SDITVEETDANKFEG-LCTVIVD-TVAAIDPR---VNCVIT-EKQN--RIKYKTLCIC 102 (454)
Q Consensus 49 -~~~---~--------------~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~~~---~~~v~~-~~g~--~i~~d~lviA 102 (454)
... + ....+.....+.+.+ +++++.+ +++.+..+ ...|++ .+|+ ++++|.||.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~A 158 (394)
T 1k0i_A 79 FAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGC 158 (394)
T ss_dssp ETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEEC
T ss_pred ECCceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEEC
Confidence 000 0 000011112222333 8888765 88888754 246666 6776 7999999999
Q ss_pred cCCCCC
Q psy1545 103 TGASPR 108 (454)
Q Consensus 103 tG~~p~ 108 (454)
+|....
T Consensus 159 dG~~S~ 164 (394)
T 1k0i_A 159 DGFHGI 164 (394)
T ss_dssp CCTTCS
T ss_pred CCCCcH
Confidence 998643
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.68 E-value=8.2e-08 Score=94.58 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=32.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 5 ~~dVvIIGgG~aGl~~A~~La~~--G~~V~v~E~~~~ 39 (421)
T 3nix_A 5 KVDVLVIGAGPAGTVAASLVNKS--GFKVKIVEKQKF 39 (421)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTT--TCCEEEECSSCS
T ss_pred cCcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCCC
Confidence 48999999999999999999998 899999999863
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=3.3e-07 Score=89.15 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=35.0
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
|++||+|||||++|+++|+.|++. |.+|+|||+.+...
T Consensus 2 ~~~dvvIIGaG~~Gl~~A~~La~~--G~~V~vie~~~~~~ 39 (389)
T 2gf3_A 2 THFDVIVVGAGSMGMAAGYQLAKQ--GVKTLLVDAFDPPH 39 (389)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCSSC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCCC
Confidence 678999999999999999999998 89999999987654
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.7e-07 Score=94.54 Aligned_cols=49 Identities=18% Similarity=0.147 Sum_probs=39.2
Q ss_pred CccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 225 SSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 225 ~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
.+++.|++|++++.|++|..++ ++...|+++||+++.+|.||.+++...
T Consensus 230 ~~~~~Gg~I~~~~~V~~I~~~~--~~~~gV~~~~g~~~~ad~VV~~a~~~~ 278 (501)
T 4dgk_A 230 LFQDLGGEVVLNARVSHMETTG--NKIEAVHLEDGRRFLTQAVASNADVVH 278 (501)
T ss_dssp HHHHTTCEEECSCCEEEEEEET--TEEEEEEETTSCEEECSCEEECCC---
T ss_pred HHHHhCCceeeecceeEEEeeC--CeEEEEEecCCcEEEcCEEEECCCHHH
Confidence 3456899999999999998766 345679999999999999999876543
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-07 Score=92.85 Aligned_cols=104 Identities=17% Similarity=0.219 Sum_probs=67.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc---cccc---------------------c------c---
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV---TKTV---------------------P------V--- 48 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~---~~~~---------------------~------~--- 48 (454)
++||+|||||++|+++|..|++. |.+|+|+|+.+..... .... . +
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~--G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQ--GHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHD 83 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEET
T ss_pred cCCEEEECcCHHHHHHHHHHHhC--CCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCC
Confidence 37999999999999999999998 8999999997643100 0000 0 0
Q ss_pred ccccccc-----------------chhhhHHHHHhc--CcEEEcc-eEEEEeCcc--c--EEEeccCcEEEecEEEEecC
Q psy1545 49 TKLLSDI-----------------TVEETDANKFEG--LCTVIVD-TVAAIDPRV--N--CVITEKQNRIKYKTLCICTG 104 (454)
Q Consensus 49 ~~~~~~~-----------------~~~~~~~~~~~~--~i~~~~~-~v~~i~~~~--~--~v~~~~g~~i~~d~lviAtG 104 (454)
......+ .+.....+.+.+ +++++.+ +|+.++.+. . .|++.+|+++++|.||.|+|
T Consensus 84 g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG 163 (399)
T 2x3n_A 84 GELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADG 163 (399)
T ss_dssp TEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCC
T ss_pred CCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCC
Confidence 0000000 111112223333 6888754 888886543 3 67777888999999999999
Q ss_pred CCC
Q psy1545 105 ASP 107 (454)
Q Consensus 105 ~~p 107 (454)
...
T Consensus 164 ~~s 166 (399)
T 2x3n_A 164 IAS 166 (399)
T ss_dssp TTC
T ss_pred CCh
Confidence 754
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=6.7e-08 Score=96.29 Aligned_cols=35 Identities=40% Similarity=0.504 Sum_probs=32.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~~--G~~V~vlE~~~~ 40 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSRR--GLKILLVDSKPW 40 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSSS--SCCEEEECSSCG
T ss_pred cCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCCC
Confidence 58999999999999999999998 999999999865
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.6e-07 Score=89.75 Aligned_cols=101 Identities=13% Similarity=0.097 Sum_probs=65.6
Q ss_pred ccEEEECCCHHHHHHHHHHhh---cCCCCeEEEECCCCcccccccccc----------cc-ccc---c------------
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAF---LHPGESIGLVTPSGIVKAVTKTVP----------VT-KLL---S------------ 53 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~---~~~g~~v~lie~~~~~~~~~~~~~----------~~-~~~---~------------ 53 (454)
+||+|||||++|+++|+.|++ . |.+|+|+|+++..++...... .. ..+ .
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~--G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~ 79 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSG--PLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDE 79 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-C--CEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHH
T ss_pred CcEEEECCcHHHHHHHHHHHhhccC--CceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHH
Confidence 699999999999999999999 6 899999999865433111000 00 000 0
Q ss_pred --------c----------------c---chhhhHHHHHhc--CcEEEcc-eEEEEeCcc--cEEEeccCcEEEecEEEE
Q psy1545 54 --------D----------------I---TVEETDANKFEG--LCTVIVD-TVAAIDPRV--NCVITEKQNRIKYKTLCI 101 (454)
Q Consensus 54 --------~----------------~---~~~~~~~~~~~~--~i~~~~~-~v~~i~~~~--~~v~~~~g~~i~~d~lvi 101 (454)
. + .-.....+.+.+ +++++.+ +|+.+..+. ..|.+.+|+.+.+|+||+
T Consensus 80 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~ 159 (342)
T 3qj4_A 80 LLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVL 159 (342)
T ss_dssp HHHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEE
T ss_pred HHhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEE
Confidence 0 0 000122333333 7787654 888887544 356666777789999999
Q ss_pred ecCC
Q psy1545 102 CTGA 105 (454)
Q Consensus 102 AtG~ 105 (454)
|+..
T Consensus 160 A~p~ 163 (342)
T 3qj4_A 160 TMPV 163 (342)
T ss_dssp CSCH
T ss_pred CCCH
Confidence 9864
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-07 Score=96.83 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=65.4
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc-------------------cc---------ccc-cccc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV-------------------TK---------TVP-VTKL 51 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~-------------------~~---------~~~-~~~~ 51 (454)
|++||+|||||++|+++|..|++. |.+|+|||+.+..... +. ... +...
T Consensus 48 ~~~DVvIVGaG~aGL~~A~~La~~--G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 125 (570)
T 3fmw_A 48 LTTDVVVVGGGPVGLMLAGELRAG--GVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGI 125 (570)
T ss_dssp ---CEEEECCSHHHHHHHHHHHHT--TCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTB
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC--CCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCc
Confidence 457999999999999999999998 9999999997543100 00 000 0000
Q ss_pred ----c--c--------cc-----chhhhHHHHHhc-CcEEEcc-eEEEEeCccc--EEEe--ccC-cEEEecEEEEecCC
Q psy1545 52 ----L--S--------DI-----TVEETDANKFEG-LCTVIVD-TVAAIDPRVN--CVIT--EKQ-NRIKYKTLCICTGA 105 (454)
Q Consensus 52 ----~--~--------~~-----~~~~~~~~~~~~-~i~~~~~-~v~~i~~~~~--~v~~--~~g-~~i~~d~lviAtG~ 105 (454)
+ . .. .+.....+.+.+ +++++.+ +|+.++.+.. .|++ .+| +++++|+||.|.|.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~ 205 (570)
T 3fmw_A 126 FTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGG 205 (570)
T ss_dssp CTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCS
T ss_pred ccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCC
Confidence 0 0 00 011112223333 8888755 8888876543 4555 567 68999999999997
Q ss_pred C
Q psy1545 106 S 106 (454)
Q Consensus 106 ~ 106 (454)
+
T Consensus 206 ~ 206 (570)
T 3fmw_A 206 R 206 (570)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.1e-08 Score=91.03 Aligned_cols=39 Identities=33% Similarity=0.437 Sum_probs=35.7
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
|++||+||||||||++||..|++. |.+|+|+|+++.+++
T Consensus 1 Mt~dV~IIGaGpaGL~aA~~La~~--G~~V~v~Ek~~~~GG 39 (336)
T 3kkj_A 1 MTVPIAIIGTGIAGLSAAQALTAA--GHQVHLFDKSRGSGG 39 (336)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCG
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCCCCCC
Confidence 899999999999999999999998 999999999987654
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.7e-07 Score=90.21 Aligned_cols=104 Identities=8% Similarity=0.011 Sum_probs=66.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc-cc---cccc-cc-------ccc-------------cc---c
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV-KA---VTKT-VP-------VTK-------------LL---S 53 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~-~~---~~~~-~~-------~~~-------------~~---~ 53 (454)
++||+|||||++|+++|..|++. |.+|+|+|+.+.. .. .... +. +.. .. .
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 82 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDA--GVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALT 82 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTT
T ss_pred CCcEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCC
Confidence 47999999999999999999998 9999999998653 10 0000 00 000 00 0
Q ss_pred c-----c-----ch-hhhHHHHHhc---CcEEEcc-eEEEEeCcc--cEEEeccCcEEEecEEEEecCCCC
Q psy1545 54 D-----I-----TV-EETDANKFEG---LCTVIVD-TVAAIDPRV--NCVITEKQNRIKYKTLCICTGASP 107 (454)
Q Consensus 54 ~-----~-----~~-~~~~~~~~~~---~i~~~~~-~v~~i~~~~--~~v~~~~g~~i~~d~lviAtG~~p 107 (454)
. . .. .....+.+.+ +++++.+ +|+.+..+. ..|++.+|+++.+|.||.|+|...
T Consensus 83 g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 153 (397)
T 2vou_A 83 GERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS 153 (397)
T ss_dssp CCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred CCccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcch
Confidence 0 0 00 0112222222 6777654 888886443 356777888999999999999753
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=98.57 E-value=6.4e-07 Score=90.82 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=35.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
++||+|||||++|++||..|++. |.+|+|+|+++..++.
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~~--G~~V~vlE~~~~~GGr 42 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHDS--GLNVVVLEARDRVGGR 42 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHHT--TCCEEEECSSSSSBTT
T ss_pred CceEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCCCCCc
Confidence 57999999999999999999998 8999999999887654
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.2e-07 Score=89.82 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=33.5
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
|++||+|||||++|+++|++|++. |.+|+|+|+.+..
T Consensus 1 m~~dvvIIG~Gi~Gl~~A~~La~~--G~~V~vle~~~~~ 37 (372)
T 2uzz_A 1 MKYDLIIIGSGSVGAAAGYYATRA--GLNVLMTDAHMPP 37 (372)
T ss_dssp -CEEEEESCTTHHHHHHHHHHHHT--TCCEEEECSSCSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCC
Confidence 789999999999999999999998 8999999997643
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-07 Score=93.83 Aligned_cols=48 Identities=6% Similarity=0.047 Sum_probs=38.8
Q ss_pred cCCceEEEeCc---eEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 227 RDTKITIEYSC---EVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 227 ~~~gv~i~~~~---~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
++.|+++++++ .|+++..+++ ....|++.+|+++.+|.||+|+|....
T Consensus 172 ~~~Gv~i~~~t~~~~V~~i~~~~~--~v~gV~t~~G~~i~Ad~VV~AtG~~s~ 222 (438)
T 3dje_A 172 QRMGVKFVTGTPQGRVVTLIFENN--DVKGAVTADGKIWRAERTFLCAGASAG 222 (438)
T ss_dssp HHTTCEEEESTTTTCEEEEEEETT--EEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred HhcCCEEEeCCcCceEEEEEecCC--eEEEEEECCCCEEECCEEEECCCCChh
Confidence 34899999999 9999987542 233488899988999999999998654
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.5e-07 Score=93.77 Aligned_cols=35 Identities=31% Similarity=0.370 Sum_probs=32.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||++|+++|..|++. |.+|+|||+.+.
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~--G~~V~LiEr~~~ 57 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKL--GHDVTIYERSAF 57 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCS
T ss_pred CCCEEEECcCHHHHHHHHHHHcC--CCCEEEEcCCCC
Confidence 47999999999999999999998 899999999854
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.5e-07 Score=93.05 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=32.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||++|+++|+.|++. |.+|+|||+.+.
T Consensus 5 ~~dVlIVGaG~aGl~~A~~La~~--G~~v~viEr~~~ 39 (535)
T 3ihg_A 5 EVDVLVVGAGLGGLSTAMFLARQ--GVRVLVVERRPG 39 (535)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTT--TCCEEEECSSSS
T ss_pred cCcEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCC
Confidence 47999999999999999999998 999999999864
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-07 Score=89.91 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||+|||||++|+++|+.|++. |.+|+|||+....
T Consensus 17 ~~dvvIIGgG~~Gl~~A~~La~~--G~~V~llE~~~~~ 52 (382)
T 1ryi_A 17 HYEAVVIGGGIIGSAIAYYLAKE--NKNTALFESGTMG 52 (382)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSTT
T ss_pred CCCEEEECcCHHHHHHHHHHHhC--CCcEEEEeCCCCC
Confidence 47999999999999999999998 8999999997644
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.4e-07 Score=94.02 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=34.3
Q ss_pred CcccEEEECCCHHHHHHHHHHhhc----CCCCeEEEECCCCcc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFL----HPGESIGLVTPSGIV 39 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~----~~g~~v~lie~~~~~ 39 (454)
|++||+|||||+||+++|..|++. ++|.+|+|||+.+..
T Consensus 34 ~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~ 76 (584)
T 2gmh_A 34 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI 76 (584)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred cCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCC
Confidence 458999999999999999999986 458899999998654
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-06 Score=86.26 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=34.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
+||+|||||++|++||+.|++. |.+|+|+|+++..++.
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~--G~~V~vlE~~~~~GG~ 38 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKA--GHEVEVFERLPITGGR 38 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHT--TCEEEEECSSSSSBTT
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCceEEEeCCCCCCCc
Confidence 4899999999999999999998 8999999999877543
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=7e-07 Score=93.62 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=38.4
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCc-EEecCEEEEeeccCcC
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGH-THACDIVVSAIGVVPN 276 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~-~~~~D~vi~a~G~~p~ 276 (454)
++.|+++++++.|+++..+++ .+.|.+++|. ++.+|.||+|+|....
T Consensus 423 ~~~Gv~i~~~t~V~~l~~~~~---~v~V~t~~G~~~i~Ad~VVlAtG~~s~ 470 (689)
T 3pvc_A 423 QQNGMTCHYQHELQRLKRIDS---QWQLTFGQSQAAKHHATVILATGHRLP 470 (689)
T ss_dssp HHTTCEEEESCCEEEEEECSS---SEEEEEC-CCCCEEESEEEECCGGGTT
T ss_pred HhCCCEEEeCCeEeEEEEeCC---eEEEEeCCCcEEEECCEEEECCCcchh
Confidence 347999999999999987663 3678888886 8999999999999744
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=6.8e-07 Score=91.64 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=33.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
++||||||||++|++||..|++. |.+|+|+|+.+..+
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~--G~~V~vlEk~~~~g 162 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDS--GAKVILIEKEPVIG 162 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCCCC
Confidence 47999999999999999999998 89999999987654
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.48 E-value=7e-07 Score=90.29 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=31.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
+||+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~--G~~V~liE~~~ 40 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMR--GHRVLLLEREA 40 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTT--TCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHhC--CCCEEEEccCC
Confidence 7999999999999999999998 89999999986
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.48 E-value=7e-07 Score=85.48 Aligned_cols=121 Identities=14% Similarity=0.120 Sum_probs=71.8
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCC-CCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKG-PSL 212 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l 212 (454)
.+++|||||+.|+.+|..|+ |.+|+++++.+.+-..+... ........... +....... +..
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~---------~~~~~~~~~~~------~~~~~~~~~~~~ 68 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHA---------WHSLHLFSPAG------WSSIPGWPMPAS 68 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGS---------CTTCBCSSCGG------GSCCSSSCCCCC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCC---------CCCcEecCchh------hhhCCCCCCCCC
Confidence 47999999999999999996 99999999887543221100 00000000000 00000000 000
Q ss_pred CCccc---cc-cccccCccCCceEEEeCceEEEEEcCCCCccceE-EEecCCcEEecCEEEEeeccCc
Q psy1545 213 GPDWH---TQ-VNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAY-VKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 213 ~~~~~---~~-~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~-v~~~~g~~~~~D~vi~a~G~~p 275 (454)
...+. .. ..+.+..++.|++++.++.|+++...++ .+. +.+++| ++++|.||+|+|..+
T Consensus 69 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~---~~~~v~~~~g-~~~~d~vV~AtG~~~ 132 (357)
T 4a9w_A 69 QGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGE---RLRVVARDGR-QWLARAVISATGTWG 132 (357)
T ss_dssp SSSSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEETT---EEEEEETTSC-EEEEEEEEECCCSGG
T ss_pred ccCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCC---cEEEEEeCCC-EEEeCEEEECCCCCC
Confidence 00000 00 0122333557999999999999987653 466 778887 899999999999643
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=5.4e-07 Score=88.32 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=33.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||+|||||++|+++|..|++. |.+|+|+|+.+..
T Consensus 23 ~~dV~IVGaG~aGl~~A~~La~~--G~~V~v~E~~~~~ 58 (407)
T 3rp8_A 23 HMKAIVIGAGIGGLSAAVALKQS--GIDCDVYEAVKEI 58 (407)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCCCC
Confidence 47999999999999999999998 9999999998653
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.9e-07 Score=87.71 Aligned_cols=35 Identities=34% Similarity=0.540 Sum_probs=32.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||++|+++|+.|++. |.+|+|||++..
T Consensus 5 ~~dVvIIGgGi~Gl~~A~~La~~--G~~V~lle~~~~ 39 (382)
T 1y56_B 5 KSEIVVIGGGIVGVTIAHELAKR--GEEVTVIEKRFI 39 (382)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSST
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCC
Confidence 47999999999999999999998 899999999854
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.9e-07 Score=96.41 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=39.4
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
++.|+++++++.|+++..+++ .+.|.+.+|.++.+|.||+|+|....
T Consensus 428 ~~~Gv~i~~~t~V~~l~~~~~---~v~V~t~~G~~i~Ad~VVlAtG~~s~ 474 (676)
T 3ps9_A 428 QQQGLQIYYQYQLQNFSRKDD---CWLLNFAGDQQATHSVVVLANGHQIS 474 (676)
T ss_dssp HHTTCEEEESCCEEEEEEETT---EEEEEETTSCEEEESEEEECCGGGGG
T ss_pred HhCCCEEEeCCeeeEEEEeCC---eEEEEECCCCEEECCEEEECCCcchh
Confidence 347999999999999987653 46788888888999999999998754
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=7e-07 Score=87.26 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 60 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQN--GIDVSVYERDND 60 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT--TCEEEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCC
Confidence 36999999999999999999998 899999999764
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.46 E-value=7.3e-07 Score=89.75 Aligned_cols=104 Identities=15% Similarity=0.160 Sum_probs=66.2
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc-----------------ccc-----------ccc--
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK-----------------TVP-----------VTK-- 50 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~-----------------~~~-----------~~~-- 50 (454)
|++||+|||||++|+++|..|++. |.+|+|||+.+....... ... +..
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~~--G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 88 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRLG--GVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRP 88 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceeccee
Confidence 358999999999999999999998 999999999754311000 000 000
Q ss_pred -c---cc-c----cchhh-----hHHHHHhc-CcEEEcc-eEEEEeCcc--cEEEeccCc---EEEecEEEEecCCC
Q psy1545 51 -L---LS-D----ITVEE-----TDANKFEG-LCTVIVD-TVAAIDPRV--NCVITEKQN---RIKYKTLCICTGAS 106 (454)
Q Consensus 51 -~---~~-~----~~~~~-----~~~~~~~~-~i~~~~~-~v~~i~~~~--~~v~~~~g~---~i~~d~lviAtG~~ 106 (454)
. .. . ..+.+ ...+.+.+ +++++.+ +++.++.+. .++++.++. ++++|+||.|.|.+
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~ 165 (499)
T 2qa2_A 89 VDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGR 165 (499)
T ss_dssp EEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTT
T ss_pred cccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcc
Confidence 0 00 0 00111 12222333 8888755 888886543 355565654 79999999999975
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=6e-07 Score=91.96 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=33.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
++||||||||++|++||..|++. |.+|+|||+.+..+
T Consensus 121 ~~DVvVVG~G~aGl~aA~~la~~--G~~V~vlEk~~~~g 157 (566)
T 1qo8_A 121 TTQVLVVGAGSAGFNASLAAKKA--GANVILVDKAPFSG 157 (566)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHH--TCCEEEECSSSSSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCCCC
Confidence 47999999999999999999998 89999999987654
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.45 E-value=7.3e-07 Score=89.77 Aligned_cols=103 Identities=15% Similarity=0.137 Sum_probs=65.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc-----------------cccc-----------cc---
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK-----------------TVPV-----------TK--- 50 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~-----------------~~~~-----------~~--- 50 (454)
++||+|||||++|+++|..|++. |.+|+|||+.+....... ...+ ..
T Consensus 11 ~~dVlIVGaGpaGl~~A~~La~~--G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 88 (500)
T 2qa1_A 11 DAAVIVVGAGPAGMMLAGELRLA--GVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPI 88 (500)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceec
Confidence 58999999999999999999998 999999999754311000 0000 00
Q ss_pred c---cc-c----cchhh-----hHHHHHhc-CcEEEcc-eEEEEeCccc--EEEeccCc---EEEecEEEEecCCC
Q psy1545 51 L---LS-D----ITVEE-----TDANKFEG-LCTVIVD-TVAAIDPRVN--CVITEKQN---RIKYKTLCICTGAS 106 (454)
Q Consensus 51 ~---~~-~----~~~~~-----~~~~~~~~-~i~~~~~-~v~~i~~~~~--~v~~~~g~---~i~~d~lviAtG~~ 106 (454)
. .. . ..+.+ ...+.+.+ +++++.+ +++.+..+.. ++++.++. ++++|+||.|.|.+
T Consensus 89 ~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~ 164 (500)
T 2qa1_A 89 DFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGR 164 (500)
T ss_dssp EGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTT
T ss_pred ccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcc
Confidence 0 00 0 00111 11222333 8888755 8888865443 45555654 79999999999975
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=98.45 E-value=7.6e-07 Score=90.84 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=38.5
Q ss_pred C-ceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 229 T-KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 229 ~-gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
. ||+++.+ +|+++..+++ +..+.|.+++|+++.+|.||.|+|.....
T Consensus 207 ~~Gv~i~~~-~V~~i~~~~~-g~~~~v~~~~G~~i~ad~vI~A~G~~S~~ 254 (550)
T 2e4g_A 207 KLGVRHVED-RVEHVQRDAN-GNIESVRTATGRVFDADLFVDCSGFRGLL 254 (550)
T ss_dssp HSCCEEEEC-CEEEEEECTT-SCEEEEEETTSCEEECSEEEECCGGGCCC
T ss_pred cCCcEEEEC-eEeEEEEcCC-CCEEEEEECCCCEEECCEEEECCCCchhh
Confidence 6 9999999 9999986442 23467888889889999999999997754
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.45 E-value=7.5e-07 Score=84.10 Aligned_cols=39 Identities=28% Similarity=0.361 Sum_probs=34.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
++||+|||||++|+++|+.|++..+|.+|+|+|+.+..+
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~G 117 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPG 117 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccC
Confidence 479999999999999999999975689999999987554
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=98.45 E-value=7e-07 Score=87.31 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHhh-cCCC-CeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAF-LHPG-ESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~-~~~g-~~v~lie~~~~~ 39 (454)
++||+|||||++|+++|++|++ . | .+|+|||+.+..
T Consensus 21 ~~dVvIIG~G~~Gl~~A~~La~~~--G~~~V~vlE~~~~~ 58 (405)
T 2gag_B 21 SYDAIIVGGGGHGLATAYFLAKNH--GITNVAVLEKGWLA 58 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHH--CCCCEEEECSSSTT
T ss_pred cCCEEEECcCHHHHHHHHHHHHhc--CCCcEEEEeCCCCC
Confidence 4799999999999999999999 8 8 899999998643
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.8e-07 Score=91.64 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCC-CeEEEECC-CCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPG-ESIGLVTP-SGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g-~~v~lie~-~~~ 38 (454)
++||+|||||++|+++|+.|++. | .+|+|||+ ...
T Consensus 23 ~~dVvIIGgGiaGls~A~~La~~--G~~~V~vlE~~~~~ 59 (448)
T 3axb_A 23 RFDYVVVGAGVVGLAAAYYLKVW--SGGSVLVVDAGHAP 59 (448)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHH--HCSCEEEEESSSST
T ss_pred cCCEEEECcCHHHHHHHHHHHhC--CCCcEEEEccCCCC
Confidence 57999999999999999999998 7 89999999 543
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.4e-06 Score=85.23 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=32.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++|+||||||+|+++|..|++. |.+|+|+|+.+..
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~--G~~v~v~Er~~~~ 36 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKH--GIKVTIYERNSAA 36 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCCEEEEecCCCC
Confidence 5899999999999999999998 9999999987643
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-06 Score=87.13 Aligned_cols=97 Identities=18% Similarity=0.222 Sum_probs=73.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||++|+.+|..|++. +.+|+++++.+.+. +. .+.++.....+.+.+ +++++.+ ++..++
T Consensus 168 ~~vvIiGgG~~g~e~A~~l~~~--g~~V~lv~~~~~~l-----~~-----~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~ 235 (455)
T 2yqu_A 168 KRLIVVGGGVIGLELGVVWHRL--GAEVIVLEYMDRIL-----PT-----MDLEVSRAAERVFKKQGLTIRTGVRVTAVV 235 (455)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSC-----TT-----SCHHHHHHHHHHHHHHTCEEECSCCEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCEEEEEecCCccc-----cc-----cCHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence 4799999999999999999998 89999999987542 11 112233334455555 9999865 898887
Q ss_pred Cccc--EEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVN--CVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~--~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
.+.. .+.+.+++++.+|.||+|+|.+|+.+.
T Consensus 236 ~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~ 268 (455)
T 2yqu_A 236 PEAKGARVELEGGEVLEADRVLVAVGRRPYTEG 268 (455)
T ss_dssp EETTEEEEEETTSCEEEESEEEECSCEEECCTT
T ss_pred EeCCEEEEEECCCeEEEcCEEEECcCCCcCCCC
Confidence 6543 345557889999999999999887654
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.37 E-value=9.2e-07 Score=85.92 Aligned_cols=109 Identities=19% Similarity=0.238 Sum_probs=75.1
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (454)
..|++|||||+.|+.+|..|. +.+|+++++.+.+. +..+.+ ...+... ..
T Consensus 9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~--y~~~~l----~~~l~g~-------------------~~--- 60 (385)
T 3klj_A 9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLP--YYRPRL----NEIIAKN-------------------KS--- 60 (385)
T ss_dssp BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCC--BCGGGH----HHHHHSC-------------------CC---
T ss_pred CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCC--cccChh----hHHHcCC-------------------CC---
Confidence 458999999999999999987 78999999877532 111222 2222110 00
Q ss_pred CCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 213 GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 213 ~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
..++. ....+.+++.||+++.+++|++++..+ ..+.+++|+++.+|.+|+|||.+|..+
T Consensus 61 ~~~l~--~~~~~~~~~~~i~~~~~~~V~~id~~~-----~~v~~~~g~~~~yd~lvlAtG~~p~~p 119 (385)
T 3klj_A 61 IDDIL--IKKNDWYEKNNIKVITSEFATSIDPNN-----KLVTLKSGEKIKYEKLIIASGSIANKI 119 (385)
T ss_dssp GGGTB--SSCHHHHHHTTCEEECSCCEEEEETTT-----TEEEETTSCEEECSEEEECCCEEECCC
T ss_pred HHHcc--CCCHHHHHHCCCEEEeCCEEEEEECCC-----CEEEECCCCEEECCEEEEecCCCcCCC
Confidence 00000 011222345799999999999998765 257889999999999999999998765
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1e-06 Score=86.99 Aligned_cols=105 Identities=21% Similarity=0.186 Sum_probs=72.1
Q ss_pred CCeEEEEcCchhHHHHHHHhc----CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS----NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP 210 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (454)
.|+|+|||||+.|+.+|..|+ +.+||++++++.+. +.|..-......+..
T Consensus 2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~---~~p~l~~v~~g~~~~----------------------- 55 (430)
T 3hyw_A 2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFG---FTPAFPHLAMGWRKF----------------------- 55 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEE---CGGGHHHHHHTCSCG-----------------------
T ss_pred CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCc---cCccHHHHhcCCCCH-----------------------
Confidence 378999999999999999885 57999999877542 122211111111000
Q ss_pred CCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 211 SLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 211 ~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
.++ ...+.+.+++.||+++.+ +|++|+.+++ +|.+++|+++++|.+|+|||.++.
T Consensus 56 ---~~i--~~~~~~~~~~~gv~~i~~-~v~~Id~~~~-----~V~~~~g~~i~YD~LViAtG~~~~ 110 (430)
T 3hyw_A 56 ---EDI--SVPLAPLLPKFNIEFINE-KAESIDPDAN-----TVTTQSGKKIEYDYLVIATGPKLV 110 (430)
T ss_dssp ---GGS--EEESTTTGGGGTEEEECS-CEEEEETTTT-----EEEETTCCEEECSEEEECCCCEEE
T ss_pred ---HHh--hhcHHHHHHHCCcEEEEe-EEEEEECCCC-----EEEECCCCEEECCEEEEeCCCCcc
Confidence 000 011233445679999887 7999987753 588999999999999999998754
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.4e-06 Score=85.53 Aligned_cols=36 Identities=33% Similarity=0.555 Sum_probs=33.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCe-EEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGES-IGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~-v~lie~~~~~ 39 (454)
++||+|||||++|+++|..|++. |.+ |+|+|+.+..
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~--G~~~v~v~E~~~~~ 40 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQA--GIGKVTLLESSSEI 40 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESSSSC
T ss_pred CCeEEEECCCHHHHHHHHHHHhC--CCCeEEEEECCCCc
Confidence 58999999999999999999998 899 9999997653
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-06 Score=86.22 Aligned_cols=37 Identities=38% Similarity=0.643 Sum_probs=33.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
+||+|||||++|+++|+.|++..||.+|+|||+....
T Consensus 37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~ 73 (405)
T 3c4n_A 37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLP 73 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSS
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 7999999999999999999998668899999997543
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=2.2e-06 Score=86.40 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=32.6
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.++||+|||||++|+++|+.|+++ |.+|+|+|+++.
T Consensus 2 ~~~DVvIIGgGi~G~~~A~~La~~--G~~V~llE~~~~ 37 (501)
T 2qcu_A 2 ETKDLIVIGGGINGAGIAADAAGR--GLSVLMLEAQDL 37 (501)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSST
T ss_pred CcCCEEEECcCHHHHHHHHHHHhC--CCCEEEEECCCC
Confidence 058999999999999999999998 899999999764
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2e-06 Score=83.64 Aligned_cols=96 Identities=18% Similarity=0.211 Sum_probs=72.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. ...+.++.....+.+.+ +++++.+ ++..++
T Consensus 146 ~~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~---------~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~ 214 (384)
T 2v3a_A 146 RRVLLLGAGLIGCEFANDLSSG--GYQLDVVAPCEQVMP---------GLLHPAAAKAVQAGLEGLGVRFHLGPVLASLK 214 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSSSST---------TTSCHHHHHHHHHHHHTTTCEEEESCCEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCeEEEEecCcchhh---------cccCHHHHHHHHHHHHHcCCEEEeCCEEEEEE
Confidence 4799999999999999999998 899999999765321 01122333444556666 9999865 788887
Q ss_pred Ccc--cEEEeccCcEEEecEEEEecCCCCCC
Q psy1545 81 PRV--NCVITEKQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~~--~~v~~~~g~~i~~d~lviAtG~~p~~ 109 (454)
.+. ..+.+.+|+++.+|.+|+|+|.+|..
T Consensus 215 ~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~ 245 (384)
T 2v3a_A 215 KAGEGLEAHLSDGEVIPCDLVVSAVGLRPRT 245 (384)
T ss_dssp EETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred ecCCEEEEEECCCCEEECCEEEECcCCCcCH
Confidence 543 35667788899999999999988754
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.2e-06 Score=85.56 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=71.9
Q ss_pred CCeEEEEcCchhHHHHHHHhc----CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS----NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP 210 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (454)
+|||+|||+|+.|+.+|..|+ +.+|+++++++.+.. .+.....+......
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~---~p~~~~v~~g~~~~----------------------- 55 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYT---CYMSNEVIGGDREL----------------------- 55 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEEC---STTHHHHHHTSSCG-----------------------
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCC---ccCHHHHhcCCCCH-----------------------
Confidence 799999999999999998875 568999998775321 12111111100000
Q ss_pred CCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 211 SLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 211 ~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
.++ ....+.+.+.||+++.+ .|++|+.+. ..+.+.+|.++++|.+++|+|.+++.+
T Consensus 56 ---~~~---~~~~~~~~~~gv~~i~~-~v~~id~~~-----~~v~~~~g~~i~yd~LviAtG~~~~~~ 111 (401)
T 3vrd_B 56 ---ASL---RVGYDGLRAHGIQVVHD-SALGIDPDK-----KLVKTAGGAEFAYDRCVVAPGIDLLYD 111 (401)
T ss_dssp ---GGG---EECSHHHHHTTCEEECS-CEEEEETTT-----TEEEETTSCEEECSEEEECCCEEECGG
T ss_pred ---HHH---hhCHHHHHHCCCEEEEe-EEEEEEccC-----cEEEecccceeecceeeeccCCccccC
Confidence 000 00112234479999877 788998765 357889999999999999999998765
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.7e-06 Score=88.05 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=31.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcC-CCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLH-PGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~-~g~~v~lie~~~~ 38 (454)
.+||+|||||++|+++|..|++.. .|.+|+|||+.+.
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~ 42 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAI 42 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 479999999999999999999921 2899999999653
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.2e-06 Score=85.08 Aligned_cols=96 Identities=19% Similarity=0.271 Sum_probs=72.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||++|+.+|..|++. +.+|+++++.+.+... ..+.++.....+.+.+ +++++.+ ++..++
T Consensus 150 ~~vvIiG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~~---------~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~ 218 (447)
T 1nhp_A 150 NNVVVIGSGYIGIEAAEAFAKA--GKKVTVIDILDRPLGV---------YLDKEFTDVLTEEMEANNITIATGETVERYE 218 (447)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSSTTTT---------TCCHHHHHHHHHHHHTTTEEEEESCCEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCeEEEEecCcccccc---------cCCHHHHHHHHHHHHhCCCEEEcCCEEEEEE
Confidence 5799999999999999999998 8999999998753210 0112333444555666 9999865 888888
Q ss_pred Cccc--EEEeccCcEEEecEEEEecCCCCCCC
Q psy1545 81 PRVN--CVITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~~--~v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
.+.+ .+.+ ++.++.+|.+|+|+|.+|+.+
T Consensus 219 ~~~~v~~v~~-~~~~i~~d~vi~a~G~~p~~~ 249 (447)
T 1nhp_A 219 GDGRVQKVVT-DKNAYDADLVVVAVGVRPNTA 249 (447)
T ss_dssp CSSBCCEEEE-SSCEEECSEEEECSCEEESCG
T ss_pred ccCcEEEEEE-CCCEEECCEEEECcCCCCChH
Confidence 6543 3555 567899999999999988754
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.5e-06 Score=83.63 Aligned_cols=94 Identities=17% Similarity=0.233 Sum_probs=71.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. . ..+.++.....+.+.+ +++++.+ ++..++
T Consensus 146 ~~vvViGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l~--------~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~ 214 (408)
T 2gqw_A 146 SRLLIVGGGVIGLELAATARTA--GVHVSLVETQPRLMS--------R-AAPATLADFVARYHAAQGVDLRFERSVTGSV 214 (408)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSSSST--------T-TSCHHHHHHHHHHHHHTTCEEEESCCEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCEEEEEEeCCcccc--------c-ccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE
Confidence 4799999999999999999998 899999999875321 0 0112233334455555 9999865 888888
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCCCC
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p~~ 109 (454)
+. .|.+.+|+++.+|.+|+|+|.+|..
T Consensus 215 -~~-~v~~~~g~~i~~D~vi~a~G~~p~~ 241 (408)
T 2gqw_A 215 -DG-VVLLDDGTRIAADMVVVGIGVLAND 241 (408)
T ss_dssp -TT-EEEETTSCEEECSEEEECSCEEECC
T ss_pred -CC-EEEECCCCEEEcCEEEECcCCCccH
Confidence 43 7888888899999999999988754
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=2.2e-06 Score=83.64 Aligned_cols=36 Identities=17% Similarity=0.365 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||+|||||++|+++|+.|++. |.+|+|+|+.+..
T Consensus 4 ~~DVvIIGaG~~Gl~~A~~La~~--G~~V~vlE~~~~~ 39 (397)
T 2oln_A 4 SYDVVVVGGGPVGLATAWQVAER--GHRVLVLERHTFF 39 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCTT
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCC
Confidence 47999999999999999999998 8999999997643
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.8e-06 Score=87.20 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=31.6
Q ss_pred CcccEEEECCCHHHHHHHHHHhh---cCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAF---LHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~---~~~g~~v~lie~~~~ 38 (454)
|.+||||||||++|+++|..|++ . |.+|+|||+.+.
T Consensus 1 m~~dVvIVGgG~aGl~~A~~La~~~~~--G~~V~lvE~~~~ 39 (511)
T 2weu_A 1 MIRSVVIVGGGTAGWMTASYLKAAFDD--RIDVTLVESGNV 39 (511)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHHHGG--GSEEEEEEC---
T ss_pred CcceEEEECCCHHHHHHHHHHHhhcCC--CCEEEEEecCCC
Confidence 77899999999999999999999 7 899999998743
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=5.5e-06 Score=77.75 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=34.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
.+||+|||||++|+++|..|++..++.+|+|+|+.+..+
T Consensus 65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~g 103 (326)
T 2gjc_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG 103 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccc
Confidence 369999999999999999999976789999999987654
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.1e-06 Score=83.01 Aligned_cols=34 Identities=32% Similarity=0.407 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||++|+++|++|+ + |.+|+|+|+.+.
T Consensus 9 ~~dv~IIGaGi~Gls~A~~La-~--G~~V~vlE~~~~ 42 (381)
T 3nyc_A 9 EADYLVIGAGIAGASTGYWLS-A--HGRVVVLEREAQ 42 (381)
T ss_dssp ECSEEEECCSHHHHHHHHHHT-T--TSCEEEECSSSS
T ss_pred cCCEEEECCcHHHHHHHHHHh-C--CCCEEEEECCCC
Confidence 479999999999999999999 5 899999999853
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.5e-06 Score=82.33 Aligned_cols=118 Identities=13% Similarity=0.059 Sum_probs=73.3
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (454)
..+++|||||+.|+.+|..|+ |.+|+++++.+.+-..+ ...... ..+.....+...-
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~---------~~~~~~------------~~~~~~~~~~~~~ 65 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQL---------SALYPE------------KYIYDVAGFPKIR 65 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH---------HHHCTT------------SEECCSTTCSSEE
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCcee---------hhcCCC------------ceEeccCCCCCCC
Confidence 368999999999999999886 99999999876533111 000000 0000000000000
Q ss_pred CCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc---CcCcc
Q psy1545 213 GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV---VPNSN 278 (454)
Q Consensus 213 ~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~---~p~~~ 278 (454)
..++.. .+.+.+++.|+++++++.|.++...++ ..+.+.+++|+ +.+|.||+|+|. .|...
T Consensus 66 ~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~ 129 (332)
T 3lzw_A 66 AQELIN--NLKEQMAKFDQTICLEQAVESVEKQAD--GVFKLVTNEET-HYSKTVIITAGNGAFKPRKL 129 (332)
T ss_dssp HHHHHH--HHHHHHTTSCCEEECSCCEEEEEECTT--SCEEEEESSEE-EEEEEEEECCTTSCCEECCC
T ss_pred HHHHHH--HHHHHHHHhCCcEEccCEEEEEEECCC--CcEEEEECCCE-EEeCEEEECCCCCcCCCCCC
Confidence 000000 122333557999999999999987652 25678888876 999999999999 66543
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=2.5e-06 Score=84.96 Aligned_cols=95 Identities=16% Similarity=0.251 Sum_probs=71.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. .+ +.++.....+.+.+ +++++.+ ++..++
T Consensus 172 ~~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~-----~~-----~~~~~~~l~~~l~~~gv~i~~~~~v~~i~ 239 (458)
T 1lvl_A 172 QHLVVVGGGYIGLELGIAYRKL--GAQVSVVEARERILP-----TY-----DSELTAPVAESLKKLGIALHLGHSVEGYE 239 (458)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSSSSST-----TS-----CHHHHHHHHHHHHHHTCEEETTCEEEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHHC--CCeEEEEEcCCcccc-----cc-----CHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence 4799999999999999999998 899999999875421 11 12233334455555 9999865 899998
Q ss_pred CcccEEEec--cC--cEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVNCVITE--KQ--NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~~v~~~--~g--~~i~~d~lviAtG~~p~~~~ 111 (454)
. .. +.+. +| +++.+|.+|+|+|.+|+.+.
T Consensus 240 ~-~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~ 272 (458)
T 1lvl_A 240 N-GC-LLANDGKGGQLRLEADRVLVAVGRRPRTKG 272 (458)
T ss_dssp T-TE-EEEECSSSCCCEECCSCEEECCCEEECCSS
T ss_pred e-CC-EEEEECCCceEEEECCEEEECcCCCcCCCC
Confidence 7 33 4333 45 58999999999999887654
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=4.9e-06 Score=84.03 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=33.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
++||||||||++|++||..|++. |.+|+|||+.+..+
T Consensus 41 ~~DVvVVGaG~AGl~AA~~aa~~--G~~V~vlEk~~~~G 77 (510)
T 4at0_A 41 EADVVVAGYGIAGVAASIEAARA--GADVLVLERTSGWG 77 (510)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSC
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCCCC
Confidence 47999999999999999999998 89999999987653
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.8e-06 Score=81.99 Aligned_cols=114 Identities=12% Similarity=0.080 Sum_probs=70.7
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCC----CccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDK----HISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEK 208 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~----~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (454)
.++++|||+|+.|+.+|..|+ |.+|+++++.+ .+-..+.... .+.....+
T Consensus 22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~------------------------~~~~~~~~ 77 (338)
T 3itj_A 22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTT------------------------EIENFPGF 77 (338)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSS------------------------EECCSTTC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccch------------------------hhcccCCC
Confidence 578999999999999999997 99999999854 1111000000 00000000
Q ss_pred CCCCC-CccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEe---cCCcEEecCEEEEeeccCcCcc
Q psy1545 209 GPSLG-PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL---TNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 209 ~~~l~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~---~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
...+. .++.. .+.+.+++.|++++.++ +.++...++ .+.+.+ .++.++.+|.+|+|+|.+|...
T Consensus 78 ~~~~~~~~~~~--~~~~~~~~~gv~i~~~~-v~~i~~~~~---~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~ 145 (338)
T 3itj_A 78 PDGLTGSELMD--RMREQSTKFGTEIITET-VSKVDLSSK---PFKLWTEFNEDAEPVTTDAIILATGASAKRM 145 (338)
T ss_dssp TTCEEHHHHHH--HHHHHHHHTTCEEECSC-EEEEECSSS---SEEEEETTCSSSCCEEEEEEEECCCEEECCC
T ss_pred cccCCHHHHHH--HHHHHHHHcCCEEEEeE-EEEEEEcCC---EEEEEEEecCCCcEEEeCEEEECcCCCcCCC
Confidence 00000 00000 12233355799999998 999987653 466666 3667899999999999988754
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=3.9e-06 Score=83.32 Aligned_cols=96 Identities=16% Similarity=0.080 Sum_probs=73.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. .+ +.+......+.+.+ +++++.+ ++..++
T Consensus 168 ~~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~-----~~-----~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 235 (450)
T 1ges_A 168 ERVAVVGAGYIGVELGGVINGL--GAKTHLFEMFDAPLP-----SF-----DPMISETLVEVMNAEGPQLHTNAIPKAVV 235 (450)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSST-----TS-----CHHHHHHHHHHHHHHSCEEECSCCEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCEEEEEEeCCchhh-----hh-----hHHHHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence 4799999999999999999998 899999999865321 11 11233334455555 9999865 888887
Q ss_pred Ccc---cEEEeccCcEEEecEEEEecCCCCCCC
Q psy1545 81 PRV---NCVITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~---~~v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
.+. ..+.+.+|+.+.+|.+|+|+|.+|...
T Consensus 236 ~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~ 268 (450)
T 1ges_A 236 KNTDGSLTLELEDGRSETVDCLIWAIGREPAND 268 (450)
T ss_dssp ECTTSCEEEEETTSCEEEESEEEECSCEEESCT
T ss_pred EeCCcEEEEEECCCcEEEcCEEEECCCCCcCCC
Confidence 542 367777888999999999999988764
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=4e-06 Score=83.61 Aligned_cols=97 Identities=18% Similarity=0.200 Sum_probs=71.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+|+++.+.+.. . .+.++.....+.+.+ +++++.+ ++..++
T Consensus 170 ~~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~-----~-----~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~ 237 (464)
T 2eq6_A 170 KRLLVIGGGAVGLELGQVYRRL--GAEVTLIEYMPEILP-----Q-----GDPETAALLRRALEKEGIRVRTKTKAVGYE 237 (464)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSST-----T-----SCHHHHHHHHHHHHHTTCEEECSEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEEcCCcccc-----c-----cCHHHHHHHHHHHHhcCCEEEcCCEEEEEE
Confidence 4799999999999999999998 899999999875421 1 112233334455555 9999866 888887
Q ss_pred Cccc--EEEec-c--Cc--EEEecEEEEecCCCCCCCC
Q psy1545 81 PRVN--CVITE-K--QN--RIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~--~v~~~-~--g~--~i~~d~lviAtG~~p~~~~ 111 (454)
.+.. .+.+. + |+ ++.+|.+|+|+|.+|....
T Consensus 238 ~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~ 275 (464)
T 2eq6_A 238 KKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEG 275 (464)
T ss_dssp EETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCTT
T ss_pred EeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCCC
Confidence 5443 45554 5 76 8999999999999887653
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=3.7e-06 Score=82.45 Aligned_cols=96 Identities=18% Similarity=0.246 Sum_probs=72.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. . ..+........+.+.+ +++++.+ .+..++
T Consensus 144 ~~vvViGgG~~g~E~A~~l~~~--g~~Vtvv~~~~~~l~--------~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~ 212 (410)
T 3ef6_A 144 TRLLIVGGGLIGCEVATTARKL--GLSVTILEAGDELLV--------R-VLGRRIGAWLRGLLTELGVQVELGTGVVGFS 212 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSSH--------H-HHCHHHHHHHHHHHHHHTCEEECSCCEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCccch--------h-hcCHHHHHHHHHHHHHCCCEEEeCCEEEEEe
Confidence 4799999999999999999998 899999999875421 0 0011233334445555 9999854 888888
Q ss_pred Cccc--EEEeccCcEEEecEEEEecCCCCCC
Q psy1545 81 PRVN--CVITEKQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~~~--~v~~~~g~~i~~d~lviAtG~~p~~ 109 (454)
.+.. .|.+.+|+++.+|.+|+|+|.+|..
T Consensus 213 ~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~ 243 (410)
T 3ef6_A 213 GEGQLEQVMASDGRSFVADSALICVGAEPAD 243 (410)
T ss_dssp CSSSCCEEEETTSCEEECSEEEECSCEEECC
T ss_pred ccCcEEEEEECCCCEEEcCEEEEeeCCeecH
Confidence 6543 5788889999999999999988764
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.5e-06 Score=87.83 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=43.3
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
.+.+++.|++++++++|+++..++ +....|.+++|+++.+|.||+|+|..+.
T Consensus 227 ~~~l~~~Gv~I~~~t~V~~I~~~~--~~v~gV~l~~G~~i~Ad~VVlA~G~~s~ 278 (549)
T 3nlc_A 227 RATIIELGGEIRFSTRVDDLHMED--GQITGVTLSNGEEIKSRHVVLAVGHSAR 278 (549)
T ss_dssp HHHHHHTTCEEESSCCEEEEEESS--SBEEEEEETTSCEEECSCEEECCCTTCH
T ss_pred HHHHHhcCCEEEeCCEEEEEEEeC--CEEEEEEECCCCEEECCEEEECCCCChh
Confidence 444566899999999999998765 2355688899999999999999999885
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=4.5e-06 Score=83.19 Aligned_cols=96 Identities=17% Similarity=0.232 Sum_probs=72.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. .+ +.+......+.+.+ +++++.+ ++..++
T Consensus 167 ~~vvVvGgG~~g~e~A~~l~~~--G~~Vtlv~~~~~~l~-----~~-----~~~~~~~l~~~l~~~gv~i~~~~~v~~i~ 234 (463)
T 2r9z_A 167 KRVAIIGAGYIGIELAGLLRSF--GSEVTVVALEDRLLF-----QF-----DPLLSATLAENMHAQGIETHLEFAVAALE 234 (463)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSST-----TS-----CHHHHHHHHHHHHHTTCEEESSCCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCEEEEEEcCCcccc-----cc-----CHHHHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence 4699999999999999999998 899999999865321 11 11222333455555 9999865 788887
Q ss_pred Ccc--cEEEeccCc-EEEecEEEEecCCCCCCC
Q psy1545 81 PRV--NCVITEKQN-RIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~--~~v~~~~g~-~i~~d~lviAtG~~p~~~ 110 (454)
.+. ..|.+.+|+ ++.+|.+|+|+|.+|+..
T Consensus 235 ~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~ 267 (463)
T 2r9z_A 235 RDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTR 267 (463)
T ss_dssp EETTEEEEEETTCCEEEEESEEEECSCEEESCT
T ss_pred EeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCC
Confidence 543 467777888 899999999999988764
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.22 E-value=3.7e-06 Score=79.86 Aligned_cols=114 Identities=11% Similarity=0.046 Sum_probs=70.9
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (454)
..+++|||+|+.|+.+|..|. |.+|+++++.+.+-..+ ...... ..+.....+....
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~---------~~~~~~------------~~~~~~~~~~~~~ 63 (335)
T 2zbw_A 5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQL---------TALYPE------------KYIYDVAGFPKVY 63 (335)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHH---------HHTCTT------------SEECCSTTCSSEE
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCee---------eccCCC------------ceeeccCCCCCCC
Confidence 358999999999999999886 99999999876542110 000000 0000000000000
Q ss_pred CCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccC
Q psy1545 213 GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVV 274 (454)
Q Consensus 213 ~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~ 274 (454)
..++.. .+.+.+++.+++++.++.|.+++..++ .+.+.+++|.++.+|.||+|+|..
T Consensus 64 ~~~~~~--~l~~~~~~~~~~~~~~~~v~~i~~~~~---~~~v~~~~g~~~~~~~lv~AtG~~ 120 (335)
T 2zbw_A 64 AKDLVK--GLVEQVAPFNPVYSLGERAETLEREGD---LFKVTTSQGNAYTAKAVIIAAGVG 120 (335)
T ss_dssp HHHHHH--HHHHHHGGGCCEEEESCCEEEEEEETT---EEEEEETTSCEEEEEEEEECCTTS
T ss_pred HHHHHH--HHHHHHHHcCCEEEeCCEEEEEEECCC---EEEEEECCCCEEEeCEEEECCCCC
Confidence 000000 112233457899999999999987652 467778888889999999999994
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=3.1e-06 Score=81.70 Aligned_cols=91 Identities=20% Similarity=0.258 Sum_probs=70.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. + +.+......+.+.+ +++++.+ ++..++
T Consensus 144 ~~vvViGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l~------~-----~~~~~~~l~~~l~~~gV~i~~~~~v~~i~ 210 (367)
T 1xhc_A 144 GEAIIIGGGFIGLELAGNLAEA--GYHVKLIHRGAMFLG------L-----DEELSNMIKDMLEETGVKFFLNSELLEAN 210 (367)
T ss_dssp SEEEEEECSHHHHHHHHHHHHT--TCEEEEECSSSCCTT------C-----CHHHHHHHHHHHHHTTEEEECSCCEEEEC
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCCeecc------C-----CHHHHHHHHHHHHHCCCEEEcCCEEEEEE
Confidence 4799999999999999999998 899999999875421 1 12233334455555 9999865 888887
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCCCC
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p~~ 109 (454)
. ..+.+++|+ +.+|.+++|+|.+|..
T Consensus 211 ~--~~v~~~~g~-i~~D~vi~a~G~~p~~ 236 (367)
T 1xhc_A 211 E--EGVLTNSGF-IEGKVKICAIGIVPNV 236 (367)
T ss_dssp S--SEEEETTEE-EECSCEEEECCEEECC
T ss_pred e--eEEEECCCE-EEcCEEEECcCCCcCH
Confidence 3 357777777 9999999999988764
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=7.4e-06 Score=83.87 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=33.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
.+||+|||||++|+++|..|++. |.+|+|+|+.+..+
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~--g~~v~~~e~~~~~~ 162 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDA--GAKVILLEKEPIPG 162 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSS--SCCEEEECSSSSSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCC
Confidence 36999999999999999999998 89999999987654
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.21 E-value=7e-06 Score=83.75 Aligned_cols=39 Identities=28% Similarity=0.486 Sum_probs=35.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
++||+|||||++|+++|..|+++ |.+|+|+|+++..++.
T Consensus 18 ~~DVvVIGgGi~Gl~~A~~La~~--G~~V~LlEk~d~~~Gt 56 (561)
T 3da1_A 18 QLDLLVIGGGITGAGIALDAQVR--GIQTGLVEMNDFASGT 56 (561)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTT--TCCEEEEESSSTTCSG
T ss_pred CCCEEEECCCHHHHHHHHHHHhC--CCcEEEEECCCCCCCc
Confidence 48999999999999999999998 9999999999765543
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.19 E-value=5.9e-06 Score=76.81 Aligned_cols=87 Identities=10% Similarity=-0.023 Sum_probs=69.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
.+++|||+|+.|+.+|..|++. + +|+++++.+. .+.....+.+.+ +++++..++..++.
T Consensus 142 ~~v~vvG~G~~~~e~a~~l~~~--g-~v~~v~~~~~-----------------~~~~~~~~~l~~~gv~i~~~~v~~i~~ 201 (297)
T 3fbs_A 142 GKIGVIAASPMAIHHALMLPDW--G-ETTFFTNGIV-----------------EPDADQHALLAARGVRVETTRIREIAG 201 (297)
T ss_dssp CEEEEECCSTTHHHHHHHGGGT--S-EEEEECTTTC-----------------CCCHHHHHHHHHTTCEEECSCEEEEET
T ss_pred CEEEEEecCccHHHHHHHhhhc--C-cEEEEECCCC-----------------CCCHHHHHHHHHCCcEEEcceeeeeec
Confidence 4799999999999999999998 7 9999987654 111223345555 99998778999987
Q ss_pred cccEEEeccCcEEEecEEEEecCCCCCCC
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
+. .|.+.+|+++.+|.+++|+|.+|..+
T Consensus 202 ~~-~v~~~~g~~~~~D~vi~a~G~~p~~~ 229 (297)
T 3fbs_A 202 HA-DVVLADGRSIALAGLFTQPKLRITVD 229 (297)
T ss_dssp TE-EEEETTSCEEEESEEEECCEEECCCS
T ss_pred CC-eEEeCCCCEEEEEEEEEccCcccCch
Confidence 65 78888899999999999999987653
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=3e-06 Score=83.84 Aligned_cols=107 Identities=14% Similarity=0.133 Sum_probs=71.6
Q ss_pred CCeEEEEcCchhHHHHHHHhc-----CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS-----NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKG 209 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~-----g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (454)
-++++|||||+.|+.+|..|+ +.+|+++++.+.+.- .+...........
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~---~~~~~~~~~g~~~----------------------- 57 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQF---VPSNPWVGVGWKE----------------------- 57 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEEC---GGGHHHHHHTSSC-----------------------
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcc---cCCccccccCccC-----------------------
Confidence 368999999999999998774 679999998875421 1111000000000
Q ss_pred CCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 210 PSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 210 ~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
..++. ..+.+.+++.||+++. ..+++++.+++ .|.+++|+++.+|.||+|+|.+|+.+
T Consensus 58 ---~~~~~--~~l~~~~~~~gv~~~~-~~v~~id~~~~-----~V~~~~g~~i~~d~lviAtG~~~~~~ 115 (437)
T 3sx6_A 58 ---RDDIA--FPIRHYVERKGIHFIA-QSAEQIDAEAQ-----NITLADGNTVHYDYLMIATGPKLAFE 115 (437)
T ss_dssp ---HHHHE--EECHHHHHTTTCEEEC-SCEEEEETTTT-----EEEETTSCEEECSEEEECCCCEECGG
T ss_pred ---HHHHH--HHHHHHHHHCCCEEEE-eEEEEEEcCCC-----EEEECCCCEEECCEEEECCCCCcCcc
Confidence 00000 0122333558999985 58999987652 57888998899999999999998865
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=4.5e-06 Score=78.60 Aligned_cols=102 Identities=16% Similarity=0.131 Sum_probs=70.1
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeC--CCccc-cc------cCCcchhhhHHHhhccCCCChhhhhhhccccc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKD--KHISA-TF------LDPGAAEFFQDSINKTNTAKPETIFKRMRYNT 204 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~--~~~~~-~~------~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 204 (454)
.+++|||+|+.|+.+|..|+ |.+|+++++. ..+.. .. +.......+...
T Consensus 16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 75 (323)
T 3f8d_A 16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKV-------------------- 75 (323)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHH--------------------
T ss_pred cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHH--------------------
Confidence 58999999999999999986 9999999986 11100 00 000000111111
Q ss_pred CCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 205 GGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
+.+.+++.|++++. ..+.++..+++ .+.+.+++|.++.+|.+|+|+|..|...
T Consensus 76 -----------------~~~~~~~~~v~~~~-~~v~~i~~~~~---~~~v~~~~g~~~~~d~lvlAtG~~~~~~ 128 (323)
T 3f8d_A 76 -----------------FNKHIEKYEVPVLL-DIVEKIENRGD---EFVVKTKRKGEFKADSVILGIGVKRRKL 128 (323)
T ss_dssp -----------------HHHHHHTTTCCEEE-SCEEEEEEC-----CEEEEESSSCEEEEEEEEECCCCEECCC
T ss_pred -----------------HHHHHHHcCCEEEE-EEEEEEEecCC---EEEEEECCCCEEEcCEEEECcCCCCccC
Confidence 12223457999999 89999987653 5678888888999999999999998764
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=98.17 E-value=7.5e-06 Score=80.38 Aligned_cols=96 Identities=17% Similarity=0.201 Sum_probs=72.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. . ..+..+.....+.+.+ +++++.+ .+..+.
T Consensus 153 ~~vvViGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~l~--------~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~ 221 (415)
T 3lxd_A 153 KNAVVIGGGYIGLEAAAVLTKF--GVNVTLLEALPRVLA--------R-VAGEALSEFYQAEHRAHGVDLRTGAAMDCIE 221 (415)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSSTTT--------T-TSCHHHHHHHHHHHHHTTCEEEETCCEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCeEEEEecCCchhh--------h-hcCHHHHHHHHHHHHhCCCEEEECCEEEEEE
Confidence 4699999999999999999998 899999999875421 0 0112233333445555 9999854 888887
Q ss_pred Ccc-c--EEEeccCcEEEecEEEEecCCCCCC
Q psy1545 81 PRV-N--CVITEKQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~~-~--~v~~~~g~~i~~d~lviAtG~~p~~ 109 (454)
.+. + .|.+.+|+++.+|.+|+|+|.+|..
T Consensus 222 ~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~ 253 (415)
T 3lxd_A 222 GDGTKVTGVRMQDGSVIPADIVIVGIGIVPCV 253 (415)
T ss_dssp ESSSBEEEEEESSSCEEECSEEEECSCCEESC
T ss_pred ecCCcEEEEEeCCCCEEEcCEEEECCCCccCh
Confidence 643 2 5777889999999999999998764
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=6.1e-06 Score=81.55 Aligned_cols=94 Identities=15% Similarity=0.202 Sum_probs=72.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..++++ +.+|+++++.+.+.. . .+.+......+.+.+ +++++.+ ++..++
T Consensus 148 ~~vvViGgG~ig~E~A~~l~~~--g~~Vtlv~~~~~ll~-----~-----~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~ 215 (437)
T 4eqs_A 148 DKVLVVGAGYVSLEVLENLYER--GLHPTLIHRSDKINK-----L-----MDADMNQPILDELDKREIPYRLNEEINAIN 215 (437)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSCCST-----T-----SCGGGGHHHHHHHHHTTCCEEESCCEEEEE
T ss_pred cEEEEECCccchhhhHHHHHhc--CCcceeeeeeccccc-----c-----ccchhHHHHHHHhhccceEEEeccEEEEec
Confidence 3799999999999999999999 899999998875421 1 112333444555666 9999755 888887
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCCCCC
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
.. .+.+++|+.+.+|.+++|+|.+|+..
T Consensus 216 ~~--~v~~~~g~~~~~D~vl~a~G~~Pn~~ 243 (437)
T 4eqs_A 216 GN--EITFKSGKVEHYDMIIEGVGTHPNSK 243 (437)
T ss_dssp TT--EEEETTSCEEECSEEEECCCEEESCG
T ss_pred CC--eeeecCCeEEeeeeEEEEeceecCcH
Confidence 54 57788999999999999999887643
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=5.1e-06 Score=82.63 Aligned_cols=97 Identities=15% Similarity=0.267 Sum_probs=70.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. |.+|+++++.+.+.. .+ +.+......+.+.+ +++++.+ ++..++
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~-----~~-----~~~~~~~l~~~l~~~gv~i~~~~~v~~i~ 238 (455)
T 1ebd_A 171 KSLVVIGGGYIGIELGTAYANF--GTKVTILEGAGEILS-----GF-----EKQMAAIIKKRLKKKGVEVVTNALAKGAE 238 (455)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSSSST-----TS-----CHHHHHHHHHHHHHTTCEEEESEEEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCcEEEEEcCCcccc-----cc-----CHHHHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence 4799999999999999999998 899999999865421 11 12233334445555 9999865 888887
Q ss_pred Cccc--EEEec---cCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVN--CVITE---KQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~--~v~~~---~g~~i~~d~lviAtG~~p~~~~ 111 (454)
.+.. .+.+. +++++.+|.+|+|+|.+|....
T Consensus 239 ~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~ 274 (455)
T 1ebd_A 239 EREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDE 274 (455)
T ss_dssp EETTEEEEEEEETTEEEEEEESEEEECSCEEESCSS
T ss_pred EeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccCc
Confidence 5443 34443 4568999999999999887643
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=98.16 E-value=6.5e-06 Score=77.21 Aligned_cols=113 Identities=9% Similarity=0.122 Sum_probs=69.7
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccC-CcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLD-PGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLG 213 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 213 (454)
+++|||+|+.|+.+|..|. |.+|+++++.. -..+.. ....... .....-.
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~--gG~~~~~~~~~~~~-------------------------~~~~~~~ 55 (310)
T 1fl2_A 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERF--GGQILDTVDIENYI-------------------------SVPKTEG 55 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSST--TGGGGGCCEECCBT-------------------------TBSSEEH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC--Cceecccccccccc-------------------------CcCCCCH
Confidence 6899999999999999986 89999996421 000000 0000000 0000000
Q ss_pred CccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 214 PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 214 ~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
+++.. .+.+.+++.|++++.++++..+....+....+.+.+++|+++.+|.+|+|+|.+|...
T Consensus 56 ~~~~~--~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~ 118 (310)
T 1fl2_A 56 QKLAG--ALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNM 118 (310)
T ss_dssp HHHHH--HHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred HHHHH--HHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCCC
Confidence 00000 1122235579999999999999764311224678888888899999999999988654
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.1e-05 Score=81.36 Aligned_cols=96 Identities=16% Similarity=0.165 Sum_probs=72.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+- +.+ +.+......+.+.+ +++++.+ ++..++
T Consensus 177 ~~vvViGgG~ig~E~A~~l~~~--g~~Vtlv~~~~~~l-----~~~-----d~~~~~~l~~~l~~~gv~i~~~~~v~~i~ 244 (500)
T 1onf_A 177 KKIGIVGSGYIAVELINVIKRL--GIDSYIFARGNRIL-----RKF-----DESVINVLENDMKKNNINIVTFADVVEIK 244 (500)
T ss_dssp SEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSSSSC-----TTS-----CHHHHHHHHHHHHHTTCEEECSCCEEEEE
T ss_pred CeEEEECChHHHHHHHHHHHHc--CCeEEEEecCCccC-----ccc-----chhhHHHHHHHHHhCCCEEEECCEEEEEE
Confidence 3699999999999999999998 89999999977532 111 12233344455655 9999865 888887
Q ss_pred Ccc---cEEEeccCcE-EEecEEEEecCCCCCCC
Q psy1545 81 PRV---NCVITEKQNR-IKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~---~~v~~~~g~~-i~~d~lviAtG~~p~~~ 110 (454)
.+. ..+.+.+|+. +.+|.+|+|+|.+|...
T Consensus 245 ~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~ 278 (500)
T 1onf_A 245 KVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTE 278 (500)
T ss_dssp ESSTTCEEEEETTSCEEEEESEEEECCCBCCTTT
T ss_pred EcCCceEEEEECCCcEEEECCEEEECCCCCcCCC
Confidence 542 3677778887 99999999999998764
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=6.1e-06 Score=80.86 Aligned_cols=106 Identities=19% Similarity=0.198 Sum_probs=69.6
Q ss_pred CeEEEEcCchhHHHHHHHhc-----CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS-----NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP 210 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~-----g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (454)
++++|||||+.|+++|..|+ |.+|+++++++.+.. .+...... .+.
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~---~~~~~~~~--------------------------~~~ 52 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYF---RPALPHVA--------------------------IGV 52 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEE---CCSSCCCC--------------------------SSC
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCcee---ccchhhcc--------------------------cCC
Confidence 58999999999999998774 689999998875432 11100000 000
Q ss_pred CCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCc----EEecCEEEEeeccCcCcc
Q psy1545 211 SLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGH----THACDIVVSAIGVVPNSN 278 (454)
Q Consensus 211 ~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~----~~~~D~vi~a~G~~p~~~ 278 (454)
....++.. .+.+.+++.|++++.+ .++++..++. .+.+++++ ++++|.||+|+|.+|+.+
T Consensus 53 ~~~~~~~~--~~~~~~~~~gv~~~~~-~v~~i~~~~~-----~V~~~~g~~~~~~~~~d~lViAtG~~~~~~ 116 (409)
T 3h8l_A 53 RDVDELKV--DLSEALPEKGIQFQEG-TVEKIDAKSS-----MVYYTKPDGSMAEEEYDYVIVGIGAHLATE 116 (409)
T ss_dssp CCCCCEEE--EHHHHTGGGTCEEEEC-EEEEEETTTT-----EEEEECTTSCEEEEECSEEEECCCCEECGG
T ss_pred cCHHHHHH--HHHHHHhhCCeEEEEe-eEEEEeCCCC-----EEEEccCCcccceeeCCEEEECCCCCcCcc
Confidence 00011111 1233345589999988 8999987652 45666664 499999999999998764
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.15 E-value=7.8e-06 Score=79.96 Aligned_cols=96 Identities=15% Similarity=0.199 Sum_probs=72.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||+|+.|+.+|..|++. +.+|+++++.+.... . ...........+.+.+ +++++.+ ++..+.
T Consensus 143 ~~vvViGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~~--------~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~ 211 (404)
T 3fg2_P 143 KHVVVIGAGFIGLEFAATARAK--GLEVDVVELAPRVMA--------R-VVTPEISSYFHDRHSGAGIRMHYGVRATEIA 211 (404)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSTTT--------T-TSCHHHHHHHHHHHHHTTCEEECSCCEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCCcchh--------h-ccCHHHHHHHHHHHHhCCcEEEECCEEEEEE
Confidence 4699999999999999999998 899999999875421 0 0112233334445555 9999865 888887
Q ss_pred Cccc---EEEeccCcEEEecEEEEecCCCCCC
Q psy1545 81 PRVN---CVITEKQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~~~---~v~~~~g~~i~~d~lviAtG~~p~~ 109 (454)
.++. .|.+.+|+++.+|.+|+|+|.+|..
T Consensus 212 ~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~ 243 (404)
T 3fg2_P 212 AEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNV 243 (404)
T ss_dssp EETTEEEEEEETTSCEEECSEEEECCCEEECC
T ss_pred ecCCcEEEEEeCCCCEEEcCEEEECcCCccCH
Confidence 6432 4677889999999999999988764
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=98.14 E-value=7.5e-06 Score=78.63 Aligned_cols=115 Identities=11% Similarity=0.128 Sum_probs=72.0
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (454)
..+++|||+|+.|+.+|..|. |.+|+++++.+.+-... ...... ..+.....+ +.+
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~---------~~~~~~------------~~~~~~~~~-~~~ 71 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQL---------AALYPE------------KHIYDVAGF-PEV 71 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH---------HHTCTT------------SEECCSTTC-SSE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcc---------cccCCC------------cccccCCCC-CCC
Confidence 468999999999999999886 99999999876542110 000000 000000000 000
Q ss_pred C-CccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 213 G-PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 213 ~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
. .++.. .+.+.+++.+++++.++.|+++...++ ..+.+.+++|+++.+|.||+|+|..+
T Consensus 72 ~~~~~~~--~l~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~v~~~~g~~~~~~~li~AtG~~~ 131 (360)
T 3ab1_A 72 PAIDLVE--SLWAQAERYNPDVVLNETVTKYTKLDD--GTFETRTNTGNVYRSRAVLIAAGLGA 131 (360)
T ss_dssp EHHHHHH--HHHHHHHTTCCEEECSCCEEEEEECTT--SCEEEEETTSCEEEEEEEEECCTTCS
T ss_pred CHHHHHH--HHHHHHHHhCCEEEcCCEEEEEEECCC--ceEEEEECCCcEEEeeEEEEccCCCc
Confidence 0 00000 122333557899999999999987542 24678888888899999999999943
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.14 E-value=4e-06 Score=82.22 Aligned_cols=138 Identities=12% Similarity=0.154 Sum_probs=76.8
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc--------------cCCc-----chhhhHHHhhccCCCCh
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF--------------LDPG-----AAEFFQDSINKTNTAKP 193 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~--------------~d~~-----~~~~~~~~l~~~~~~~~ 193 (454)
..+|+|||||+.|+.+|..++ |.+|+++++.+.+..+. .+++ ....+...+......+.
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDF 106 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHH
Confidence 458999999999999999986 99999999887642210 0000 00111111110000000
Q ss_pred hhhhhhcccccCCCCCCCCCCccc--ccc-ccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEe
Q psy1545 194 ETIFKRMRYNTGGEKGPSLGPDWH--TQV-NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSA 270 (454)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~--~~~-~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a 270 (454)
.....+..+.........+.+... ... .+.+.+++.|++++++++|+++..+++ .+.|.+++| ++.+|.||+|
T Consensus 107 ~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~---~~~V~~~~g-~i~ad~VIlA 182 (417)
T 3v76_A 107 VALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTAS---GFRVTTSAG-TVDAASLVVA 182 (417)
T ss_dssp HHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETT---EEEEEETTE-EEEESEEEEC
T ss_pred HHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCC---EEEEEECCc-EEEeeEEEEC
Confidence 000001111110000011111111 000 133445667999999999999987653 477888887 8999999999
Q ss_pred eccCcC
Q psy1545 271 IGVVPN 276 (454)
Q Consensus 271 ~G~~p~ 276 (454)
+|..+.
T Consensus 183 tG~~S~ 188 (417)
T 3v76_A 183 SGGKSI 188 (417)
T ss_dssp CCCSSC
T ss_pred CCCccC
Confidence 999863
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=9.8e-06 Score=80.39 Aligned_cols=49 Identities=20% Similarity=0.180 Sum_probs=37.3
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecC---Cc---EEecCEEEEeecc--CcCcc
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTN---GH---THACDIVVSAIGV--VPNSN 278 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~---g~---~~~~D~vi~a~G~--~p~~~ 278 (454)
++.++.++++++|++++..++ .+.|++.+ |+ ++.+|.||+|+|. .|+.+
T Consensus 126 ~~~~~~i~~~t~V~~v~~~~~---~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~p~~p 182 (447)
T 2gv8_A 126 QPLLPFIKLATDVLDIEKKDG---SWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIP 182 (447)
T ss_dssp GGGGGGEECSEEEEEEEEETT---EEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCBC
T ss_pred HHhhCeEEeCCEEEEEEeCCC---eEEEEEeecCCCCeeEEEEeCEEEECCCCCCCCCCC
Confidence 344778889999999987543 46677665 66 7999999999999 55543
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=9.6e-06 Score=80.01 Aligned_cols=96 Identities=15% Similarity=0.185 Sum_probs=71.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. . ..+.++.....+.+.+ +++++.+ ++..++
T Consensus 150 ~~vvViGgG~~g~E~A~~l~~~--G~~Vtlv~~~~~~l~--------~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~ 218 (431)
T 1q1r_A 150 NRLVVIGGGYIGLEVAATAIKA--NMHVTLLDTAARVLE--------R-VTAPPVSAFYEHLHREAGVDIRTGTQVCGFE 218 (431)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSTTT--------T-TSCHHHHHHHHHHHHHHTCEEECSCCEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCEEEEEEeCCcccc--------c-hhhHHHHHHHHHHHHhCCeEEEeCCEEEEEE
Confidence 4699999999999999999998 899999998765311 0 0111233333445555 9999866 888887
Q ss_pred C--c-cc--EEEeccCcEEEecEEEEecCCCCCC
Q psy1545 81 P--R-VN--CVITEKQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~--~-~~--~v~~~~g~~i~~d~lviAtG~~p~~ 109 (454)
. + .+ .|.+.+|+.+.+|.+|+|+|.+|..
T Consensus 219 ~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~ 252 (431)
T 1q1r_A 219 MSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNC 252 (431)
T ss_dssp ECTTTCCEEEEEETTSCEEECSEEEECCCEEECC
T ss_pred eccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCc
Confidence 5 3 22 5677788899999999999987753
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=9.7e-06 Score=83.40 Aligned_cols=95 Identities=23% Similarity=0.335 Sum_probs=74.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.... .+ +.+......+.+.+ +++++.+ ++..++
T Consensus 188 ~~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~-----~~-----~~~~~~~l~~~l~~~GV~i~~~~~v~~i~ 255 (588)
T 3ics_A 188 RHATVIGGGFIGVEMVENLRER--GIEVTLVEMANQVMP-----PI-----DYEMAAYVHEHMKNHDVELVFEDGVDALE 255 (588)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSCT-----TS-----CHHHHHHHHHHHHHTTCEEECSCCEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCcccc-----cC-----CHHHHHHHHHHHHHcCCEEEECCeEEEEe
Confidence 4699999999999999999998 899999998764321 11 12233344455555 9999864 899998
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCCCC
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p~~ 109 (454)
.+...|.+.+|+++.+|.+|+|+|.+|..
T Consensus 256 ~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~ 284 (588)
T 3ics_A 256 ENGAVVRLKSGSVIQTDMLILAIGVQPES 284 (588)
T ss_dssp GGGTEEEETTSCEEECSEEEECSCEEECC
T ss_pred cCCCEEEECCCCEEEcCEEEEccCCCCCh
Confidence 76667888888899999999999988764
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=1e-05 Score=81.00 Aligned_cols=95 Identities=14% Similarity=0.130 Sum_probs=72.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. .+ +.+......+.+.+ +++++.+ ++..++
T Consensus 186 ~~vvViGgG~ig~E~A~~l~~~--g~~Vtlv~~~~~~l~-----~~-----d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 253 (479)
T 2hqm_A 186 KKVVVVGAGYIGIELAGVFHGL--GSETHLVIRGETVLR-----KF-----DECIQNTITDHYVKEGINVHKLSKIVKVE 253 (479)
T ss_dssp SEEEEECSSHHHHHHHHHHHHT--TCEEEEECSSSSSCT-----TS-----CHHHHHHHHHHHHHHTCEEECSCCEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCceEEEEeCCcccc-----cc-----CHHHHHHHHHHHHhCCeEEEeCCEEEEEE
Confidence 4799999999999999999998 899999999875321 11 11233344455556 9999865 888887
Q ss_pred Cc--c--cEEEeccC-cEEEecEEEEecCCCCCC
Q psy1545 81 PR--V--NCVITEKQ-NRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~--~--~~v~~~~g-~~i~~d~lviAtG~~p~~ 109 (454)
.+ . ..|.+.+| +.+.+|.+|+|+|.+|..
T Consensus 254 ~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~ 287 (479)
T 2hqm_A 254 KNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL 287 (479)
T ss_dssp ECC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred EcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence 53 2 35777788 789999999999998876
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=8.2e-06 Score=84.66 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=32.2
Q ss_pred cccEEEECCCHHHHHHHHHHhh-cCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAF-LHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~-~~~g~~v~lie~~~~ 38 (454)
++||+|||||++|+++|..|++ . |.+|+|||+.+.
T Consensus 32 ~~dVlIVGaGpaGL~~A~~La~~~--G~~V~viEr~~~ 67 (639)
T 2dkh_A 32 QVDVLIVGCGPAGLTLAAQLAAFP--DIRTCIVEQKEG 67 (639)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTCT--TSCEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHhC--CCCEEEEeCCCC
Confidence 3799999999999999999999 8 999999999754
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=8.5e-06 Score=81.56 Aligned_cols=96 Identities=22% Similarity=0.272 Sum_probs=70.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. .+ +.+......+.+.+ +++++.+ ++..++
T Consensus 184 ~~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~-----~~-----~~~~~~~l~~~l~~~gv~i~~~~~v~~i~ 251 (478)
T 1v59_A 184 KRLTIIGGGIIGLEMGSVYSRL--GSKVTVVEFQPQIGA-----SM-----DGEVAKATQKFLKKQGLDFKLSTKVISAK 251 (478)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSSS-----SS-----CHHHHHHHHHHHHHTTCEEECSEEEEEEE
T ss_pred ceEEEECCCHHHHHHHHHHHHc--CCEEEEEEeCCcccc-----cc-----CHHHHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence 4799999999999999999998 899999999875421 11 12233344455555 9999865 888887
Q ss_pred C--ccc--EEEec-----cCcEEEecEEEEecCCCCCCC
Q psy1545 81 P--RVN--CVITE-----KQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~--~~~--~v~~~-----~g~~i~~d~lviAtG~~p~~~ 110 (454)
. +.. .+.+. +++.+.+|.+|+|+|.+|...
T Consensus 252 ~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~ 290 (478)
T 1v59_A 252 RNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIA 290 (478)
T ss_dssp EETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCT
T ss_pred EecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCC
Confidence 5 333 44444 346799999999999988764
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.1e-05 Score=80.97 Aligned_cols=96 Identities=19% Similarity=0.241 Sum_probs=71.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. . ..+.++.....+.+.+ +++++.+ ++..++
T Consensus 195 ~~vvVIGgG~ig~E~A~~l~~~--g~~Vtlv~~~~~~l~--------~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~ 263 (490)
T 2bc0_A 195 KRVAVVGAGYIGVELAEAFQRK--GKEVVLIDVVDTCLA--------G-YYDRDLTDLMAKNMEEHGIQLAFGETVKEVA 263 (490)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSSTTT--------T-TSCHHHHHHHHHHHHTTTCEEEETCCEEEEE
T ss_pred ceEEEECCCHHHHHHHHHHHHC--CCeEEEEEcccchhh--------h-HHHHHHHHHHHHHHHhCCeEEEeCCEEEEEE
Confidence 4699999999999999999998 899999999865311 0 0112333444556666 9999865 888887
Q ss_pred Cccc--EEEeccCcEEEecEEEEecCCCCCCC
Q psy1545 81 PRVN--CVITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~~--~v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
.+.+ .+.+ +++++.+|.+|+|+|.+|..+
T Consensus 264 ~~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~~~ 294 (490)
T 2bc0_A 264 GNGKVEKIIT-DKNEYDVDMVILAVGFRPNTT 294 (490)
T ss_dssp CSSSCCEEEE-SSCEEECSEEEECCCEEECCG
T ss_pred cCCcEEEEEE-CCcEEECCEEEECCCCCcChH
Confidence 6542 3555 677899999999999887653
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.3e-05 Score=81.67 Aligned_cols=35 Identities=29% Similarity=0.293 Sum_probs=32.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||++|+++|..|++. |.+|+|||+.+.
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~--G~~V~vlEr~~~ 60 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHR--QVGHLVVEQTDG 60 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCC
Confidence 37999999999999999999998 999999999754
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=7.4e-06 Score=82.08 Aligned_cols=96 Identities=22% Similarity=0.321 Sum_probs=71.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. |.+|+++++.+.+-. . .+.+......+.+.+ +|+++.+ ++..++
T Consensus 186 ~~vvViGgG~ig~E~A~~l~~~--G~~Vtlv~~~~~~l~-----~-----~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~ 253 (482)
T 1ojt_A 186 GKLLIIGGGIIGLEMGTVYSTL--GSRLDVVEMMDGLMQ-----G-----ADRDLVKVWQKQNEYRFDNIMVNTKTVAVE 253 (482)
T ss_dssp SEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSSSSST-----T-----SCHHHHHHHHHHHGGGEEEEECSCEEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEEECCcccc-----c-----cCHHHHHHHHHHHHhcCCEEEECCEEEEEE
Confidence 4799999999999999999998 899999999875421 1 112233344555666 9999865 888887
Q ss_pred Ccc--cEEEecc----CcEEEecEEEEecCCCCCCC
Q psy1545 81 PRV--NCVITEK----QNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~--~~v~~~~----g~~i~~d~lviAtG~~p~~~ 110 (454)
.+. ..+.+.+ |+++.+|.+|+|+|.+|+..
T Consensus 254 ~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~ 289 (482)
T 1ojt_A 254 PKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGK 289 (482)
T ss_dssp EETTEEEEEEESSSCCSSCEEESCEEECCCEEECGG
T ss_pred EcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCCC
Confidence 543 3456655 67899999999999988753
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.7e-05 Score=80.36 Aligned_cols=131 Identities=20% Similarity=0.204 Sum_probs=73.1
Q ss_pred CeEEEEcCchhHHHHHHHhc---CCcEEEEEeCCCcccccc---CCcchhhhHHHhhccCCCChhhhhhhcccccCCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS---NVDIVWVVKDKHISATFL---DPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKG 209 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~---g~~V~~i~~~~~~~~~~~---d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (454)
.+++|||||+.|+.+|..|. |.+|+++++.+.+-..+. .+...-.....+-. ..-. ..+.... ...
T Consensus 9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~-~~~~-~~~~~~~------~~~ 80 (540)
T 3gwf_A 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYR-FSFD-RDLLQES------TWK 80 (540)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSS-CCSC-HHHHHHC------CCS
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceee-eccc-cccccCC------CCc
Confidence 58999999999999998885 889999998765432110 00000000000000 0000 0000000 000
Q ss_pred CCC--CCccccccccccCccCCce--EEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc--CcCc
Q psy1545 210 PSL--GPDWHTQVNLHGSSRDTKI--TIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV--VPNS 277 (454)
Q Consensus 210 ~~l--~~~~~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~--~p~~ 277 (454)
..+ .+++.. ++.+..++.|+ ++++++.|+++..+++ ...+.|.+++|+++.+|.||+|+|. +|..
T Consensus 81 ~~~~~~~ei~~--~l~~~~~~~g~~~~i~~~~~V~~i~~~~~-~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~ 151 (540)
T 3gwf_A 81 TTYITQPEILE--YLEDVVDRFDLRRHFKFGTEVTSALYLDD-ENLWEVTTDHGEVYRAKYVVNAVGLLSAINF 151 (540)
T ss_dssp BSEEEHHHHHH--HHHHHHHHTTCGGGEEESCCEEEEEEETT-TTEEEEEETTSCEEEEEEEEECCCSCCSBCC
T ss_pred ccCCCHHHHHH--HHHHHHHHcCCcceeEeccEEEEEEEeCC-CCEEEEEEcCCCEEEeCEEEECCcccccCCC
Confidence 000 001111 12222345677 8999999999986553 3367889999999999999999995 5554
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.9e-06 Score=87.08 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=39.5
Q ss_pred cccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccC
Q psy1545 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVV 274 (454)
Q Consensus 222 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~ 274 (454)
+.+.+++.|+++++++.|++|..++. .+.+.+|+++.+|.||.++...
T Consensus 228 l~~~l~~~g~~i~~~~~V~~I~~~~~-----~v~~~~G~~~~ad~vI~t~P~~ 275 (513)
T 4gde_A 228 VANTLPKEKTRFGEKGKVTKVNANNK-----TVTLQDGTTIGYKKLVSTMAVD 275 (513)
T ss_dssp HHHTSCGGGEEESGGGCEEEEETTTT-----EEEETTSCEEEEEEEEECSCHH
T ss_pred HHHHHHhcCeeeecceEEEEEEccCC-----EEEEcCCCEEECCEEEECCCHH
Confidence 34556778999999999999998662 4678999999999999987653
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=8.6e-06 Score=76.41 Aligned_cols=111 Identities=15% Similarity=0.166 Sum_probs=68.6
Q ss_pred eEEEEcCchhHHHHHHHhc--CC-cEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NV-DIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLG 213 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~-~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 213 (454)
+++|||+|+.|+.+|..|. |. +|+++++.. +-....... .+ .....+...+.
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~-~gg~~~~~~-------~~-----------------~~~~~~~~~~~ 57 (311)
T 2q0l_A 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM-PGGQITGSS-------EI-----------------ENYPGVKEVVS 57 (311)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSS-TTCGGGGCS-------CB-----------------CCSTTCCSCBC
T ss_pred eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCC-CCccccccc-------cc-----------------ccCCCCcccCC
Confidence 6899999999999999886 88 999999742 111000000 00 00000000000
Q ss_pred -CccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 214 -PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 214 -~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
.++.. .+.+.+++.|++++. ..+.++...++ .+.+.+.+|+++.+|.||+|+|..|...
T Consensus 58 ~~~~~~--~l~~~~~~~~v~~~~-~~v~~i~~~~~---~~~v~~~~g~~~~~~~vv~AtG~~~~~~ 117 (311)
T 2q0l_A 58 GLDFMQ--PWQEQCFRFGLKHEM-TAVQRVSKKDS---HFVILAEDGKTFEAKSVIIATGGSPKRT 117 (311)
T ss_dssp HHHHHH--HHHHHHHTTSCEEEC-SCEEEEEEETT---EEEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred HHHHHH--HHHHHHHHcCCEEEE-EEEEEEEEcCC---EEEEEEcCCCEEECCEEEECCCCCCCCC
Confidence 00000 112233557999988 68888876542 4667788888999999999999987654
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.3e-05 Score=77.87 Aligned_cols=96 Identities=17% Similarity=0.185 Sum_probs=71.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||..|+.+|..|++. +.+|+++++.+.+.. . ..+.+......+.+.+ +++++.+ ++..++
T Consensus 148 ~~vvViGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l~--------~-~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~ 216 (452)
T 3oc4_A 148 QTVAVIGAGPIGMEAIDFLVKM--KKTVHVFESLENLLP--------K-YFDKEMVAEVQKSLEKQAVIFHFEETVLGIE 216 (452)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSSSST--------T-TCCHHHHHHHHHHHHTTTEEEEETCCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEEccCcccc--------c-cCCHHHHHHHHHHHHHcCCEEEeCCEEEEEE
Confidence 4699999999999999999998 899999999875411 0 0112333444556666 9999854 888887
Q ss_pred Cc-cc-EEEeccCcEEEecEEEEecCCCCCCC
Q psy1545 81 PR-VN-CVITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~-~~-~v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
.. .. .|.++++ ++.+|.+|+|+|.+|...
T Consensus 217 ~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p~~~ 247 (452)
T 3oc4_A 217 ETANGIVLETSEQ-EISCDSGIFALNLHPQLA 247 (452)
T ss_dssp ECSSCEEEEESSC-EEEESEEEECSCCBCCCS
T ss_pred ccCCeEEEEECCC-EEEeCEEEECcCCCCChH
Confidence 33 22 3666556 899999999999988764
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.3e-05 Score=80.15 Aligned_cols=97 Identities=20% Similarity=0.248 Sum_probs=70.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. . . + +.+......+.+.+ +++++.+ ++..++
T Consensus 179 ~~vvViGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l~---~-~----~-~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 247 (474)
T 1zmd_A 179 EKMVVIGAGVIGVELGSVWQRL--GADVTAVEFLGHVGG---V-G----I-DMEISKNFQRILQKQGFKFKLNTKVTGAT 247 (474)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSSC---S-S----C-CHHHHHHHHHHHHHTTCEEECSEEEEEEE
T ss_pred ceEEEECCCHHHHHHHHHHHHc--CCEEEEEeccCccCC---c-c----c-CHHHHHHHHHHHHHCCCEEEeCceEEEEE
Confidence 4799999999999999999998 899999999875311 0 0 1 11233334455555 9999865 888887
Q ss_pred Ccc---cEEEe-----ccCcEEEecEEEEecCCCCCCC
Q psy1545 81 PRV---NCVIT-----EKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~---~~v~~-----~~g~~i~~d~lviAtG~~p~~~ 110 (454)
.+. ..+.+ .+++++.+|.+|+|+|.+|...
T Consensus 248 ~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~ 285 (474)
T 1zmd_A 248 KKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTK 285 (474)
T ss_dssp ECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCT
T ss_pred EcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCC
Confidence 654 23442 3556899999999999988754
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=7e-06 Score=83.47 Aligned_cols=133 Identities=15% Similarity=0.184 Sum_probs=74.5
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccccc---CCcchhhhHHHhhccCCCChhhhhhhcccccCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFL---DPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKG 209 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~---d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (454)
..+++|||+|+.|+.+|..|. |.+|+++++.+.+-..+. .|...-.....+-. ..-. ..+.... ...
T Consensus 21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~-~~f~-~~~~~~~------~~~ 92 (549)
T 4ap3_A 21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYS-YSFS-PELEQEW------NWS 92 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSS-CCSC-HHHHHHC------CCS
T ss_pred CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcc-cccc-cccccCC------CCc
Confidence 358999999999999999986 999999998765432110 00000000000000 0000 0000000 000
Q ss_pred CCCC--CccccccccccCccCCce--EEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeec--cCcCcc
Q psy1545 210 PSLG--PDWHTQVNLHGSSRDTKI--TIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIG--VVPNSN 278 (454)
Q Consensus 210 ~~l~--~~~~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G--~~p~~~ 278 (454)
..+. +++.. ++.+..++.|+ +++++++|+++..+++ ...+.|.+++|+++.+|.||+|+| .+|..+
T Consensus 93 ~~~~~~~ei~~--yl~~~~~~~g~~~~i~~~~~V~~i~~~~~-~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p 164 (549)
T 4ap3_A 93 EKYATQPEILA--YLEHVADRFDLRRDIRFDTRVTSAVLDEE-GLRWTVRTDRGDEVSARFLVVAAGPLSNANTP 164 (549)
T ss_dssp SSSCBHHHHHH--HHHHHHHHTTCGGGEECSCCEEEEEEETT-TTEEEEEETTCCEEEEEEEEECCCSEEECCCC
T ss_pred cCCCCHHHHHH--HHHHHHHHcCCCccEEECCEEEEEEEcCC-CCEEEEEECCCCEEEeCEEEECcCCCCCCCCC
Confidence 0000 11111 12222344666 7899999999986543 336788999999999999999999 566543
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.2e-05 Score=77.94 Aligned_cols=134 Identities=16% Similarity=0.086 Sum_probs=76.2
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhh-----hhhcccccCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETI-----FKRMRYNTGGE 207 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~ 207 (454)
..+|+|||||+.|+.+|..|. |.+|+++++.+........-.+.....+.+.+. .-..... .....+.. .
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~--~ 87 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGL-GALDDVLQGSHTPPTYETWM--H 87 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHT-TCHHHHHTTCBCCSCEEEEE--T
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHc-CCHHHHHhhCCCccceEEEe--C
Confidence 568999999999999999996 999999998765432100000111111111110 0000000 00000000 0
Q ss_pred CCCCC------C-Cc--ccc---ccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 208 KGPSL------G-PD--WHT---QVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 208 ~~~~l------~-~~--~~~---~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
+..+ + +. +.+ ...+.+.+++.|++++.+++|++++. + . .+++++|+++.+|+||.|+|..+
T Consensus 88 -g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~----~-~v~~~~g~~~~ad~vV~AdG~~s 160 (379)
T 3alj_A 88 -NKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP-V----G-RLTLQTGEVLEADLIVGADGVGS 160 (379)
T ss_dssp -TEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET-T----T-EEEETTSCEEECSEEEECCCTTC
T ss_pred -CceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe-C----C-EEEECCCCEEEcCEEEECCCccH
Confidence 0000 0 00 000 00123444557999999999999987 3 2 67888898999999999999987
Q ss_pred Ccc
Q psy1545 276 NSN 278 (454)
Q Consensus 276 ~~~ 278 (454)
...
T Consensus 161 ~vr 163 (379)
T 3alj_A 161 KVR 163 (379)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.2e-05 Score=81.44 Aligned_cols=95 Identities=17% Similarity=0.189 Sum_probs=71.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||..|+.+|..|++. +.+|+++++.+.+.. .+ +.++.....+.+.+ +++++.+ ++..++
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~--G~~Vtlv~~~~~~l~-----~~-----~~~~~~~l~~~l~~~GV~i~~~~~V~~i~ 282 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNAT--GRRTVMLVRTEPLKL-----IK-----DNETRAYVLDRMKEQGMEIISGSNVTRIE 282 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCTTTT-----CC-----SHHHHHHHHHHHHHTTCEEESSCEEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEEecCcccc-----cc-----cHHHHHHHHHHHHhCCcEEEECCEEEEEE
Confidence 5799999999999999999998 889999999875321 11 12233344455555 9999865 888887
Q ss_pred C--cc----cEEEeccCc-EEEecEEEEecCCCCCC
Q psy1545 81 P--RV----NCVITEKQN-RIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~--~~----~~v~~~~g~-~i~~d~lviAtG~~p~~ 109 (454)
. +. ..|.+.+|+ ++.+|.+|+|+|.+|..
T Consensus 283 ~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~ 318 (523)
T 1mo9_A 283 EDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRS 318 (523)
T ss_dssp ECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECC
T ss_pred EcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCC
Confidence 5 33 346676776 89999999999998865
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.1e-05 Score=86.31 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=32.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~~ 38 (454)
++||+|||||++|+++|++|++. |. +|+|||+++.
T Consensus 4 ~~dVvIIGgGi~Gls~A~~La~~--G~~~V~vlE~~~~ 39 (830)
T 1pj5_A 4 TPRIVIIGAGIVGTNLADELVTR--GWNNITVLDQGPL 39 (830)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT--TCCCEEEECSSCT
T ss_pred CCCEEEECcCHHHHHHHHHHHhC--CCCcEEEEeCCCC
Confidence 58999999999999999999998 87 9999999875
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.2e-05 Score=81.20 Aligned_cols=96 Identities=14% Similarity=0.049 Sum_probs=72.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+-.|..++++ |.+|+|+++...+. . .+.++.....+.+.+ ++.++.+ .+..+.
T Consensus 224 ~~lvIIGgG~IGlE~A~~~~~l--G~~VTii~~~~~L~------~-----~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~ 290 (542)
T 4b1b_A 224 GKTLVVGASYVALECSGFLNSL--GYDVTVAVRSIVLR------G-----FDQQCAVKVKLYMEEQGVMFKNGILPKKLT 290 (542)
T ss_dssp CSEEEECCSHHHHHHHHHHHHH--TCCEEEEESSCSST------T-----SCHHHHHHHHHHHHHTTCEEEETCCEEEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhc--CCeEEEeccccccc------c-----cchhHHHHHHHHHHhhcceeecceEEEEEE
Confidence 4799999999999999999999 99999998754321 1 123344455566666 9999765 777776
Q ss_pred Cccc--EEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVN--CVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~--~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
.... .|.+.++..+.+|.+++|+|-+|+...
T Consensus 291 ~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~ 323 (542)
T 4b1b_A 291 KMDDKILVEFSDKTSELYDTVLYAIGRKGDIDG 323 (542)
T ss_dssp EETTEEEEEETTSCEEEESEEEECSCEEESCGG
T ss_pred ecCCeEEEEEcCCCeEEEEEEEEcccccCCccc
Confidence 5444 455667788999999999999887654
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.5e-05 Score=79.42 Aligned_cols=97 Identities=18% Similarity=0.151 Sum_probs=71.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. .+ +.+......+.+.+ +++++.+ ++..++
T Consensus 172 ~~vvViGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l~-----~~-----~~~~~~~l~~~l~~~gv~i~~~~~v~~i~ 239 (464)
T 2a8x_A 172 KSIIIAGAGAIGMEFGYVLKNY--GVDVTIVEFLPRALP-----NE-----DADVSKEIEKQFKKLGVTILTATKVESIA 239 (464)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSST-----TS-----CHHHHHHHHHHHHHHTCEEECSCEEEEEE
T ss_pred CeEEEECCcHHHHHHHHHHHHc--CCeEEEEEcCCcccc-----cc-----CHHHHHHHHHHHHHcCCEEEeCcEEEEEE
Confidence 4799999999999999999998 899999999875321 11 12233334455555 9999865 888887
Q ss_pred Ccc--cEEEec-cC--cEEEecEEEEecCCCCCCCC
Q psy1545 81 PRV--NCVITE-KQ--NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~--~~v~~~-~g--~~i~~d~lviAtG~~p~~~~ 111 (454)
.+. ..+.+. +| +++.+|.+|+|+|.+|....
T Consensus 240 ~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~ 275 (464)
T 2a8x_A 240 DGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEG 275 (464)
T ss_dssp ECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSS
T ss_pred EcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCC
Confidence 544 244443 55 57999999999999887643
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.6e-05 Score=79.93 Aligned_cols=98 Identities=17% Similarity=0.273 Sum_probs=73.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCC-CCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHP-GESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAI 79 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i 79 (454)
.+++|||||+.|+.+|..|++..+ +.+|+++++.+.+- +.+ +.+......+.+.+ +++++.+ ++..+
T Consensus 192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l-----~~~-----d~~~~~~l~~~l~~~GV~i~~~~~v~~i 261 (495)
T 2wpf_A 192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL-----RGF-----DETIREEVTKQLTANGIEIMTNENPAKV 261 (495)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSC-----TTS-----CHHHHHHHHHHHHHTTCEEEESCCEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccc-----ccc-----CHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 469999999999999999998743 78999999987532 111 11233344455555 9999865 88888
Q ss_pred eCcc---cEEEeccCcEEEecEEEEecCCCCCCC
Q psy1545 80 DPRV---NCVITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 80 ~~~~---~~v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
+.+. ..|.+.+|+++.+|.+|+|+|.+|...
T Consensus 262 ~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~ 295 (495)
T 2wpf_A 262 SLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTN 295 (495)
T ss_dssp EECTTSCEEEEETTSCEEEESEEEECSCEEECCG
T ss_pred EEcCCceEEEEECCCcEEEcCEEEECCCCccccc
Confidence 7542 367777888999999999999988763
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=98.04 E-value=2.1e-05 Score=80.93 Aligned_cols=35 Identities=31% Similarity=0.353 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||||||||+||++||..|++. |.+|+|+|+...
T Consensus 18 ~~DVvVVG~G~AGl~AAl~aa~~--G~~V~vlEK~~~ 52 (621)
T 2h88_A 18 EFDAVVVGAGGAGLRAAFGLSEA--GFNTACVTKLFP 52 (621)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCG
T ss_pred cCCEEEECccHHHHHHHHHHHHC--CCcEEEEeccCC
Confidence 47999999999999999999998 899999999754
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.8e-05 Score=79.68 Aligned_cols=96 Identities=15% Similarity=0.203 Sum_probs=72.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. .+ +.+......+.+.+ +++++.+ ++..++
T Consensus 183 ~~vvViGgG~ig~E~A~~l~~~--g~~Vtlv~~~~~~l~-----~~-----d~~~~~~l~~~l~~~GV~i~~~~~V~~i~ 250 (499)
T 1xdi_A 183 DHLIVVGSGVTGAEFVDAYTEL--GVPVTVVASQDHVLP-----YE-----DADAALVLEESFAERGVRLFKNARAASVT 250 (499)
T ss_dssp SSEEEESCSHHHHHHHHHHHHT--TCCEEEECSSSSSSC-----CS-----SHHHHHHHHHHHHHTTCEEETTCCEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEEcCCcccc-----cc-----CHHHHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence 4699999999999999999998 889999999875421 11 11233344455555 9999865 888887
Q ss_pred Ccc--cEEEeccCcEEEecEEEEecCCCCCCC
Q psy1545 81 PRV--NCVITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~--~~v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
.+. ..+.+.+|+++.+|.+|+|+|.+|+..
T Consensus 251 ~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~ 282 (499)
T 1xdi_A 251 RTGAGVLVTMTDGRTVEGSHALMTIGSVPNTS 282 (499)
T ss_dssp ECSSSEEEEETTSCEEEESEEEECCCEEECCS
T ss_pred EeCCEEEEEECCCcEEEcCEEEECCCCCcCCC
Confidence 654 345566778999999999999988764
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.9e-05 Score=80.10 Aligned_cols=36 Identities=33% Similarity=0.419 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcC----------CCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLH----------PGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~----------~g~~v~lie~~~ 37 (454)
.+||+|||||+||+++|..|++.. .|.+|+|||+.+
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~ 52 (526)
T 2pyx_A 7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD 52 (526)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence 379999999999999999999910 289999999864
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.6e-05 Score=75.17 Aligned_cols=113 Identities=12% Similarity=0.098 Sum_probs=69.2
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLG 213 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 213 (454)
.+++|||+|+.|+.+|..|. |.+|+++++. .+-....... .+ .....+...+.
T Consensus 9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~-------~~-----------------~~~~~~~~~~~ 63 (325)
T 2q7v_A 9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAWSE-------EV-----------------ENFPGFPEPIA 63 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCS-------CB-----------------CCSTTCSSCBC
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccccc-------cc-----------------ccCCCCCCCCC
Confidence 57999999999999999886 9999999986 2211000000 00 00000000000
Q ss_pred -CccccccccccCccCCceEEEeCceEEEEEcC--CCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 214 -PDWHTQVNLHGSSRDTKITIEYSCEVERIVDS--EDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 214 -~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~--~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
.++.. .+.+.+++.|++++. ..+.++... ++ ..+.+.+.+|+++.+|.||+|+|.+|...
T Consensus 64 ~~~~~~--~l~~~~~~~gv~~~~-~~v~~i~~~~~~~--~~~~v~~~~g~~~~~~~vv~AtG~~~~~~ 126 (325)
T 2q7v_A 64 GMELAQ--RMHQQAEKFGAKVEM-DEVQGVQHDATSH--PYPFTVRGYNGEYRAKAVILATGADPRKL 126 (325)
T ss_dssp HHHHHH--HHHHHHHHTTCEEEE-CCEEEEEECTTSS--SCCEEEEESSCEEEEEEEEECCCEEECCC
T ss_pred HHHHHH--HHHHHHHHcCCEEEe-eeEEEEEeccCCC--ceEEEEECCCCEEEeCEEEECcCCCcCCC
Confidence 00000 012233457999988 588888765 32 12567778888999999999999988654
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.4e-05 Score=80.04 Aligned_cols=95 Identities=19% Similarity=0.257 Sum_probs=69.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. .+ +.++.....+.+.+ +++++.+ ++..++
T Consensus 187 ~~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~-----~~-----~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 254 (480)
T 3cgb_A 187 EDVTIIGGGAIGLEMAETFVEL--GKKVRMIERNDHIGT-----IY-----DGDMAEYIYKEADKHHIEILTNENVKAFK 254 (480)
T ss_dssp CEEEEECCHHHHHHHHHHHHHT--TCEEEEECCGGGTTS-----SS-----CHHHHHHHHHHHHHTTCEEECSCCEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCeEEEEEeCCchhh-----cC-----CHHHHHHHHHHHHHcCcEEEcCCEEEEEE
Confidence 4799999999999999999998 899999999865321 11 12233344455555 9999854 888887
Q ss_pred CcccE--EEeccCcEEEecEEEEecCCCCCCC
Q psy1545 81 PRVNC--VITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~~~--v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
.+.+. +.+ ++.++.+|.+|+|+|.+|..+
T Consensus 255 ~~~~v~~v~~-~~~~i~~D~vi~a~G~~p~~~ 285 (480)
T 3cgb_A 255 GNERVEAVET-DKGTYKADLVLVSVGVKPNTD 285 (480)
T ss_dssp ESSBEEEEEE-TTEEEECSEEEECSCEEESCG
T ss_pred cCCcEEEEEE-CCCEEEcCEEEECcCCCcChH
Confidence 65432 444 455899999999999887653
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.8e-05 Score=77.08 Aligned_cols=139 Identities=11% Similarity=0.101 Sum_probs=77.0
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCc--chhhhHHHhhccCCCChhhhhhhcccccCCC-CC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPG--AAEFFQDSINKTNTAKPETIFKRMRYNTGGE-KG 209 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~ 209 (454)
..+|+|||||+.|+.+|..|+ |.+|+++++.+..... .... +.....+.+.+....+.........+..... -+
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~-~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g 83 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSG-FGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG 83 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCC-CSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCc-cccccccChhHHHHHHHcCCccccccccccceEEEecCCC
Confidence 568999999999999999996 9999999988764221 0000 1111222222210000000000000000000 00
Q ss_pred CCCC-----CccccccccccCccC--CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 210 PSLG-----PDWHTQVNLHGSSRD--TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 210 ~~l~-----~~~~~~~~~~~~l~~--~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
..+. .....+-.+.+.+.+ .|++++++++|++++.+++ .+.+.+++|+++.+|+||.|.|.....
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~---~v~v~~~~g~~~~ad~vV~AdG~~S~v 155 (397)
T 2vou_A 84 ERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSE---TVQMRFSDGTKAEANWVIGADGGASVV 155 (397)
T ss_dssp CEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSS---CEEEEETTSCEEEESEEEECCCTTCHH
T ss_pred CccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCC---EEEEEECCCCEEECCEEEECCCcchhH
Confidence 0000 000000011111211 3899999999999987653 477889999899999999999997654
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=8.5e-06 Score=77.26 Aligned_cols=113 Identities=13% Similarity=0.075 Sum_probs=68.9
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEe----CCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVK----DKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEK 208 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~----~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (454)
..+++|||+|+.|+.+|..|+ |.+|+++++ ...+-..+.... .+.....+
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~------------------------~~~~~~~~ 63 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTT------------------------DVENFPGF 63 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCS------------------------EECCSTTC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeecc------------------------ccccCCCC
Confidence 358999999999999999986 999999987 221111000000 00000000
Q ss_pred CCCCC-CccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 209 GPSLG-PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 209 ~~~l~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
...+. .++.. .+.+.+++.|++++.++ +.++...++ .+.+.+ +|.++.+|.||+|+|.+|...
T Consensus 64 ~~~~~~~~~~~--~l~~~~~~~gv~~~~~~-v~~i~~~~~---~~~v~~-~~~~~~~~~vv~A~G~~~~~~ 127 (333)
T 1vdc_A 64 PEGILGVELTD--KFRKQSERFGTTIFTET-VTKVDFSSK---PFKLFT-DSKAILADAVILAIGAVAKRL 127 (333)
T ss_dssp TTCEEHHHHHH--HHHHHHHHTTCEEECCC-CCEEECSSS---SEEEEC-SSEEEEEEEEEECCCEEECCC
T ss_pred ccCCCHHHHHH--HHHHHHHHCCCEEEEeE-EEEEEEcCC---EEEEEE-CCcEEEcCEEEECCCCCcCCC
Confidence 00000 00111 12233355799999986 888876542 456666 778899999999999988654
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.4e-05 Score=78.08 Aligned_cols=51 Identities=12% Similarity=0.165 Sum_probs=40.1
Q ss_pred ccCccCCceEEEeCceEEEEEcC----CCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDS----EDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~----~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
.+.+++.||++++++.++++..+ ++ .+.+.+++| ++.+|.||+|+|..+..
T Consensus 116 ~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~---~~~v~~~~g-~i~ad~VVlAtG~~s~p 170 (401)
T 2gqf_A 116 KSECDKYGAKILLRSEVSQVERIQNDEKV---RFVLQVNST-QWQCKNLIVATGGLSMP 170 (401)
T ss_dssp HHHHHHHTCEEECSCCEEEEEECCSCSSC---CEEEEETTE-EEEESEEEECCCCSSCG
T ss_pred HHHHHHCCCEEEeCCEEEEEEcccCcCCC---eEEEEECCC-EEECCEEEECCCCccCC
Confidence 34456689999999999999854 32 366777766 79999999999998843
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=98.01 E-value=2e-05 Score=78.61 Aligned_cols=96 Identities=18% Similarity=0.216 Sum_probs=70.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHH-hc-CcEEEcc-eEEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKF-EG-LCTVIVD-TVAAI 79 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~i~~~~~-~v~~i 79 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. .+ +.+......+.+ .+ +++++.+ ++..+
T Consensus 175 ~~vvViGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l~-----~~-----d~~~~~~l~~~l~~~~gv~i~~~~~v~~i 242 (468)
T 2qae_A 175 KTMVVIGGGVIGLELGSVWARL--GAEVTVVEFAPRCAP-----TL-----DEDVTNALVGALAKNEKMKFMTSTKVVGG 242 (468)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSST-----TS-----CHHHHHHHHHHHHHHTCCEEECSCEEEEE
T ss_pred ceEEEECCCHHHHHHHHHHHHh--CCEEEEEecCCcccc-----cC-----CHHHHHHHHHHHhhcCCcEEEeCCEEEEE
Confidence 4799999999999999999998 899999999875421 11 122334445556 55 9999865 88888
Q ss_pred eCcc--cEEEec--cC--cEEEecEEEEecCCCCCCC
Q psy1545 80 DPRV--NCVITE--KQ--NRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 80 ~~~~--~~v~~~--~g--~~i~~d~lviAtG~~p~~~ 110 (454)
+.+. ..+.+. +| +++.+|.+|+|+|.+|+..
T Consensus 243 ~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~ 279 (468)
T 2qae_A 243 TNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTG 279 (468)
T ss_dssp EECSSSEEEEEECC---EEEEEESEEEECSCEEECCT
T ss_pred EEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCC
Confidence 7654 345554 56 5799999999999988754
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=2.1e-05 Score=79.10 Aligned_cols=109 Identities=13% Similarity=0.176 Sum_probs=66.7
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLG 213 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 213 (454)
+||||||||+.|+.+|..|. +.+||+|++++.+. +.|.+-+.. ...+.
T Consensus 43 prVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~---~~PlL~~va---------------------------~G~l~ 92 (502)
T 4g6h_A 43 PNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFL---FTPLLPSAP---------------------------VGTVD 92 (502)
T ss_dssp CEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEE---CGGGGGGTT---------------------------TTSSC
T ss_pred CCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcc---cccchhHHh---------------------------hcccc
Confidence 58999999999999999996 88999999887542 111111100 00000
Q ss_pred Cc-cccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEe------------------cCCcEEecCEEEEeeccC
Q psy1545 214 PD-WHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL------------------TNGHTHACDIVVSAIGVV 274 (454)
Q Consensus 214 ~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~------------------~~g~~~~~D~vi~a~G~~ 274 (454)
++ +...+.-....++.+++++.+ .+++|+.+.+ .+.+.. .++.++++|.+|+|+|.+
T Consensus 93 ~~~i~~p~~~~~~~~~~~v~~~~~-~v~~ID~~~k---~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~ 168 (502)
T 4g6h_A 93 EKSIIEPIVNFALKKKGNVTYYEA-EATSINPDRN---TVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAE 168 (502)
T ss_dssp GGGGEEEHHHHHTTCSSCEEEEEE-EEEEEEGGGT---EEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCE
T ss_pred HHHhhhhHHHHHHhhcCCeEEEEE-EEEEEEhhhC---EEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcc
Confidence 00 000000000113467888876 6888877652 333322 345789999999999999
Q ss_pred cCcc
Q psy1545 275 PNSN 278 (454)
Q Consensus 275 p~~~ 278 (454)
|+..
T Consensus 169 ~~~~ 172 (502)
T 4g6h_A 169 PNTF 172 (502)
T ss_dssp ECCT
T ss_pred cccC
Confidence 9864
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=2e-05 Score=79.09 Aligned_cols=98 Identities=15% Similarity=0.236 Sum_probs=73.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCC-CCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHP-GESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAI 79 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i 79 (454)
.+++|||||+.|+.+|..|++..+ +.+|+++++.+.+. +.+ +.+......+.+.+ +++++.+ ++..+
T Consensus 188 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l-----~~~-----d~~~~~~l~~~l~~~GV~i~~~~~v~~i 257 (490)
T 1fec_A 188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-----RGF-----DSELRKQLTEQLRANGINVRTHENPAKV 257 (490)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS-----TTS-----CHHHHHHHHHHHHHTTEEEEETCCEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcc-----ccc-----CHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 479999999999999999998632 78999999987532 111 12233344455555 9999865 88888
Q ss_pred eCcc---cEEEeccCcEEEecEEEEecCCCCCCC
Q psy1545 80 DPRV---NCVITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 80 ~~~~---~~v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
+.+. ..|.+.+|+++.+|.+|+|+|.+|...
T Consensus 258 ~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~ 291 (490)
T 1fec_A 258 TKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQ 291 (490)
T ss_dssp EECTTSCEEEEETTSCEEEESEEEECSCEEESCT
T ss_pred EEcCCCEEEEEECCCcEEEcCEEEEccCCCcCcc
Confidence 7542 367777888999999999999988764
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.2e-05 Score=76.57 Aligned_cols=138 Identities=13% Similarity=0.039 Sum_probs=76.6
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhh-----hhhcccccC---
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETI-----FKRMRYNTG--- 205 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~--- 205 (454)
.+|+|||||+.|+.+|..|+ |.+|+++++.+..........+.....+.+.+.. ...... .....+...
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~g~ 85 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAG-LLAEVTRRGGRVRHELEVYHDGE 85 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTT-CHHHHHHTTCEEECEEEEEETTE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcC-cHHHHHHhCCCcceeEEEeCCCC
Confidence 57999999999999999996 9999999987654211001111111111111100 000000 000000000
Q ss_pred -------CCCC-CCCCCccccc---cccccCccCC-ceEEEeCceEEEEEcCCCCccce--EEEecCCcEEecCEEEEee
Q psy1545 206 -------GEKG-PSLGPDWHTQ---VNLHGSSRDT-KITIEYSCEVERIVDSEDDTCNA--YVKLTNGHTHACDIVVSAI 271 (454)
Q Consensus 206 -------~~~~-~~l~~~~~~~---~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~--~v~~~~g~~~~~D~vi~a~ 271 (454)
.... +..+..+.+. ..+.+.+++. |++++++++|++++.+++ .+ .+++++|+++++|+||.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~---~v~g~v~~~~g~~~~ad~vV~Ad 162 (399)
T 2x3n_A 86 LLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDER---HAIDQVRLNDGRVLRPRVVVGAD 162 (399)
T ss_dssp EEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTT---SCEEEEEETTSCEEEEEEEEECC
T ss_pred EEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCC---ceEEEEEECCCCEEECCEEEECC
Confidence 0000 0000000100 0123444555 999999999999987653 35 7888899899999999999
Q ss_pred ccCcCc
Q psy1545 272 GVVPNS 277 (454)
Q Consensus 272 G~~p~~ 277 (454)
|..+..
T Consensus 163 G~~s~v 168 (399)
T 2x3n_A 163 GIASYV 168 (399)
T ss_dssp CTTCHH
T ss_pred CCChHH
Confidence 998754
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.2e-05 Score=78.00 Aligned_cols=96 Identities=22% Similarity=0.261 Sum_probs=69.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. . ..+.++.....+.+.+ +++++.+ ++..++
T Consensus 150 ~~vvViGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l~--------~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 218 (452)
T 2cdu_A 150 KTITIIGSGYIGAELAEAYSNQ--NYNVNLIDGHERVLY--------K-YFDKEFTDILAKDYEAHGVNLVLGSKVAAFE 218 (452)
T ss_dssp SEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSTTT--------T-TSCHHHHHHHHHHHHHTTCEEEESSCEEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhc--CCEEEEEEcCCchhh--------h-hhhhhHHHHHHHHHHHCCCEEEcCCeeEEEE
Confidence 4699999999999999999998 889999998765311 0 0112233344455555 9999865 888887
Q ss_pred Cccc---EEEeccCcEEEecEEEEecCCCCCCC
Q psy1545 81 PRVN---CVITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~~---~v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
..+. .+.+ +|+++.+|.+|+|+|.+|...
T Consensus 219 ~~~~~v~~v~~-~g~~i~~D~vv~a~G~~p~~~ 250 (452)
T 2cdu_A 219 EVDDEIITKTL-DGKEIKSDIAILCIGFRPNTE 250 (452)
T ss_dssp EETTEEEEEET-TSCEEEESEEEECCCEEECCG
T ss_pred cCCCeEEEEEe-CCCEEECCEEEECcCCCCCHH
Confidence 5222 2344 678899999999999987653
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.7e-05 Score=80.47 Aligned_cols=127 Identities=16% Similarity=0.191 Sum_probs=72.0
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccccc---CCc-----chhhhHHHhhccCCCChhhhhhhcccccC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFL---DPG-----AAEFFQDSINKTNTAKPETIFKRMRYNTG 205 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~---d~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 205 (454)
.+++|||||+.|+.+|..|. |.+|+++++.+.+-..+. -|. ....+...+.. .....
T Consensus 10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~-------------~~~~~ 76 (545)
T 3uox_A 10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALK-------------GIIPE 76 (545)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHT-------------TSSTT
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCc-------------ccccC
Confidence 58999999999999999986 999999998865422110 000 00001000000 00000
Q ss_pred CCCCCCCC--CccccccccccCccCCce--EEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeec--cCcCcc
Q psy1545 206 GEKGPSLG--PDWHTQVNLHGSSRDTKI--TIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIG--VVPNSN 278 (454)
Q Consensus 206 ~~~~~~l~--~~~~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G--~~p~~~ 278 (454)
......+. +++... +.+..++.|+ .++.++.|++++.+++ ...+.|.+++|+++.+|.||+|+| .+|..+
T Consensus 77 ~~~~~~~~~~~ei~~y--l~~~~~~~~l~~~i~~~~~V~~~~~~~~-~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p 152 (545)
T 3uox_A 77 WEWSENFASQPEMLRY--VNRAADAMDVRKHYRFNTRVTAARYVEN-DRLWEVTLDNEEVVTCRFLISATGPLSASRMP 152 (545)
T ss_dssp CCCSBSSCBHHHHHHH--HHHHHHHHTCGGGEECSCCEEEEEEEGG-GTEEEEEETTTEEEEEEEEEECCCSCBC---C
T ss_pred CCccccCCCHHHHHHH--HHHHHHHcCCcCcEEECCEEEEEEEeCC-CCEEEEEECCCCEEEeCEEEECcCCCCCCcCC
Confidence 00000000 111111 1222244555 7888999999876542 336788999999999999999999 566543
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.6e-05 Score=79.37 Aligned_cols=97 Identities=14% Similarity=0.199 Sum_probs=71.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. .+ +.++.....+.+.+ +++++.+ ++..++
T Consensus 178 ~~vvViGgG~~g~e~A~~l~~~--g~~Vtli~~~~~~l~-----~~-----~~~~~~~l~~~l~~~gv~i~~~~~v~~i~ 245 (470)
T 1dxl_A 178 KKLVVIGAGYIGLEMGSVWGRI--GSEVTVVEFASEIVP-----TM-----DAEIRKQFQRSLEKQGMKFKLKTKVVGVD 245 (470)
T ss_dssp SEEEESCCSHHHHHHHHHHHHH--TCEEEEECSSSSSST-----TS-----CHHHHHHHHHHHHHSSCCEECSEEEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCcEEEEEcCCcccc-----cc-----cHHHHHHHHHHHHHcCCEEEeCCEEEEEE
Confidence 4799999999999999999998 899999999875421 11 12233334455555 9999865 889998
Q ss_pred Cccc--EEEec---cC--cEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVN--CVITE---KQ--NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~--~v~~~---~g--~~i~~d~lviAtG~~p~~~~ 111 (454)
.+.. .+.+. +| +++.+|.+|+|+|.+|....
T Consensus 246 ~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~ 283 (470)
T 1dxl_A 246 TSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSG 283 (470)
T ss_dssp CSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCTT
T ss_pred EcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCCC
Confidence 6542 44443 34 68999999999999887643
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.98 E-value=4.7e-06 Score=83.31 Aligned_cols=41 Identities=27% Similarity=0.326 Sum_probs=35.8
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCC--eEEEECCCCcccccc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGE--SIGLVTPSGIVKAVT 43 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~--~v~lie~~~~~~~~~ 43 (454)
|++||+|||||++|++||++|++. |. +|+|+|+++..++..
T Consensus 1 m~~dVvVIGaGiaGLsaA~~L~~~--G~~~~V~vlEa~~~~GG~~ 43 (477)
T 3nks_A 1 MGRTVVVLGGGISGLAASYHLSRA--PCPPKVVLVESSERLGGWI 43 (477)
T ss_dssp -CCEEEEECCBHHHHHHHHHHHTS--SSCCEEEEECSSSSSBTTC
T ss_pred CCceEEEECCcHHHHHHHHHHHhC--CCCCcEEEEeCCCCCCCce
Confidence 778999999999999999999998 77 999999988776543
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.6e-05 Score=78.87 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=69.0
Q ss_pred CCeEEEEcCchhHHHHHHHhc----CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS----NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP 210 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (454)
.++++|||||+.|+.+|..|+ +.+|+++++.+.+... ...+...+... ..
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~--~~~~p~~~~~~-~~----------------------- 56 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHA--PCGIPYVVEGL-ST----------------------- 56 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-----------------------------------------
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccC--CcCCccccCCC-CC-----------------------
Confidence 478999999999999999885 6799999988754210 00000000000 00
Q ss_pred CCCCccccccccccCc-cCCceEEEeCceEEEEEcCCCCccceEEEecCC-cEEecCEEEEeeccCcCcc
Q psy1545 211 SLGPDWHTQVNLHGSS-RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG-HTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 211 ~l~~~~~~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g-~~~~~D~vi~a~G~~p~~~ 278 (454)
..++.. ...+.+ ++.|++++.++.+.++.... ..+.++++ .++.+|.+|+|||.+|..+
T Consensus 57 --~~~~~~--~~~~~~~~~~gi~v~~~~~v~~i~~~~-----~~v~~~~g~~~~~~d~lviAtG~~p~~p 117 (449)
T 3kd9_A 57 --PDKLMY--YPPEVFIKKRGIDLHLNAEVIEVDTGY-----VRVRENGGEKSYEWDYLVFANGASPQVP 117 (449)
T ss_dssp -------------CTHHHHTTCEEETTCEEEEECSSE-----EEEECSSSEEEEECSEEEECCCEEECCC
T ss_pred --HHHhhh--cCHHHHHHhcCcEEEecCEEEEEecCC-----CEEEECCceEEEEcCEEEECCCCCCCCC
Confidence 000000 011222 45799999999999997653 45667777 4899999999999988754
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.96 E-value=3.2e-05 Score=77.51 Aligned_cols=97 Identities=20% Similarity=0.280 Sum_probs=73.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||+|+.|+.+|..+++. +.+|+++++.+.+.. .+ +.++.....+.+.+ +++++.+ ++..++
T Consensus 192 ~~v~ViGgG~~g~e~A~~l~~~--g~~Vtli~~~~~~l~-----~~-----~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~ 259 (484)
T 3o0h_A 192 KSIVIVGGGYIGVEFANIFHGL--GVKTTLLHRGDLILR-----NF-----DYDLRQLLNDAMVAKGISIIYEATVSQVQ 259 (484)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSST-----TS-----CHHHHHHHHHHHHHHTCEEESSCCEEEEE
T ss_pred CcEEEECcCHHHHHHHHHHHHc--CCeEEEEECCCcccc-----cc-----CHHHHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence 4799999999999999999998 889999999875321 11 12233344455555 9999864 888887
Q ss_pred Cccc--EEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVN--CVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~--~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
.+.. .|.+.+|+++.+|.+|+|+|.+|....
T Consensus 260 ~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~ 292 (484)
T 3o0h_A 260 STENCYNVVLTNGQTICADRVMLATGRVPNTTG 292 (484)
T ss_dssp ECSSSEEEEETTSCEEEESEEEECCCEEECCTT
T ss_pred eeCCEEEEEECCCcEEEcCEEEEeeCCCcCCCC
Confidence 6432 567778889999999999999876653
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=97.96 E-value=2.3e-05 Score=79.18 Aligned_cols=115 Identities=11% Similarity=0.149 Sum_probs=71.8
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCC-cchhhhHHHhhccCCCChhhhhhhcccccCCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDP-GAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPS 211 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (454)
..+++|||||+.|+.+|..++ |.+|+++++.. -....+. .+.... .....
T Consensus 212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~--GG~~~~~~~~~~~~-------------------------~~~~~ 264 (521)
T 1hyu_A 212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERF--GGQVLDTVDIENYI-------------------------SVPKT 264 (521)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSST--TGGGTTCSCBCCBT-------------------------TBSSB
T ss_pred cccEEEECCcHHHHHHHHHHHhCCCeEEEEECCC--CCcccccccccccC-------------------------CCCCC
Confidence 457999999999999999886 89999997521 1110000 000000 00000
Q ss_pred CCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 212 LGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 212 l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
-.+++.. .+.+.+++.|++++.++++.++....+.+..+.+.+++|.++.+|.||+|+|.+|...
T Consensus 265 ~~~~l~~--~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~ 329 (521)
T 1hyu_A 265 EGQKLAG--ALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNM 329 (521)
T ss_dssp CHHHHHH--HHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred CHHHHHH--HHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCC
Confidence 0001111 1223335689999999999999754211225678888898999999999999987653
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=97.96 E-value=3.8e-05 Score=77.10 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=69.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhcCcEEEcc-eEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEGLCTVIVD-TVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~v~~i~~ 81 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. .+ +.+......+.+.+.++++.+ ++..+..
T Consensus 175 k~vvViGgG~ig~E~A~~l~~~--g~~Vtlv~~~~~~l~-----~~-----d~~~~~~l~~~l~~~V~i~~~~~v~~i~~ 242 (492)
T 3ic9_A 175 KSVAVFGPGVIGLELGQALSRL--GVIVKVFGRSGSVAN-----LQ-----DEEMKRYAEKTFNEEFYFDAKARVISTIE 242 (492)
T ss_dssp SEEEEESSCHHHHHHHHHHHHT--TCEEEEECCTTCCTT-----CC-----CHHHHHHHHHHHHTTSEEETTCEEEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEEECCcccc-----cC-----CHHHHHHHHHHHhhCcEEEECCEEEEEEE
Confidence 4799999999999999999998 899999999875421 11 112333333444446888754 7888865
Q ss_pred ccc--EEEec--cC--cEEEecEEEEecCCCCCCCC
Q psy1545 82 RVN--CVITE--KQ--NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 82 ~~~--~v~~~--~g--~~i~~d~lviAtG~~p~~~~ 111 (454)
+.. .+.+. +| .++.+|.+|+|+|.+|....
T Consensus 243 ~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~ 278 (492)
T 3ic9_A 243 KEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDK 278 (492)
T ss_dssp CSSSEEEEEECTTCCEEEEEESEEEECSCCEESCSS
T ss_pred cCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCC
Confidence 432 34443 56 68999999999999887654
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=97.95 E-value=2.7e-05 Score=72.82 Aligned_cols=103 Identities=15% Similarity=0.101 Sum_probs=63.1
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc------ccccCCc--chhhhHHHhhccCCCChhhhhhhcccccCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS------ATFLDPG--AAEFFQDSINKTNTAKPETIFKRMRYNTGG 206 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~------~~~~d~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 206 (454)
.++|||+|+.|+.+|..++ |.+|+++++...-- +.+...+ ....+.+..
T Consensus 8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 66 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIG--------------------- 66 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHH---------------------
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHH---------------------
Confidence 6899999999999998775 99999999753210 0000000 000010100
Q ss_pred CCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 207 EKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
+.+..+..++.++.. .+..+...++ ....+.+.+|+++++|.||+|||.+|..+
T Consensus 67 ---------------~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~v~~~~g~~~~a~~liiATGs~p~~p 120 (304)
T 4fk1_A 67 ---------------LNEVMKYPSVHYYEK-TVVMITKQST--GLFEIVTKDHTKYLAERVLLATGMQEEFP 120 (304)
T ss_dssp ---------------HHHHTTSTTEEEEEC-CEEEEEECTT--SCEEEEETTCCEEEEEEEEECCCCEEECC
T ss_pred ---------------HHHHHhcCCEEEEee-EEEEeeecCC--CcEEEEECCCCEEEeCEEEEccCCccccc
Confidence 011112245666655 4445544331 25678889999999999999999988754
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=3.8e-05 Score=72.21 Aligned_cols=93 Identities=17% Similarity=0.209 Sum_probs=68.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||+|+.|+.+|..|++. +.+|+++++.+.+.. ...+.....+.+.+ +++++.+ ++..++
T Consensus 146 ~~v~ViG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~------------~~~~~~~l~~~l~~~gv~i~~~~~v~~i~ 211 (320)
T 1trb_A 146 QKVAVIGGGNTAVEEALYLSNI--ASEVHLIHRRDGFRA------------EKILIKRLMDKVENGNIILHTNRTLEEVT 211 (320)
T ss_dssp SEEEEECSSHHHHHHHHHHTTT--SSEEEEECSSSSCCC------------CHHHHHHHHHHHHTSSEEEECSCEEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCeEEEEEeCCcccc------------CHHHHHHHHHhcccCCeEEEcCceeEEEE
Confidence 4799999999999999999998 889999998765410 11222334455566 9999855 888887
Q ss_pred Ccc-c--EEEecc----C--cEEEecEEEEecCCCCCC
Q psy1545 81 PRV-N--CVITEK----Q--NRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~~-~--~v~~~~----g--~~i~~d~lviAtG~~p~~ 109 (454)
.+. + .|.+.+ | .++.+|.+|+|+|.+|..
T Consensus 212 ~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~ 249 (320)
T 1trb_A 212 GDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNT 249 (320)
T ss_dssp ECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESC
T ss_pred cCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCCh
Confidence 654 2 255543 4 579999999999988764
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=4.1e-05 Score=76.87 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=70.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcC--CCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLH--PGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAA 78 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~--~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~ 78 (454)
.+++|||||+.|+.+|..|++.. .+.+|+++++.+... ...+ +..+.....+.+.+ +++++.+ .+..
T Consensus 181 ~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~--------~~~l-~~~~~~~~~~~l~~~GV~v~~~~~V~~ 251 (493)
T 1m6i_A 181 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM--------GKIL-PEYLSNWTMEKVRREGVKVMPNAIVQS 251 (493)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT--------TTTS-CHHHHHHHHHHHHTTTCEEECSCCEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccc--------cccC-CHHHHHHHHHHHHhcCCEEEeCCEEEE
Confidence 47999999999999999998731 167999998875321 0111 11233334455666 9999866 8888
Q ss_pred EeCcc--cEEEeccCcEEEecEEEEecCCCCCC
Q psy1545 79 IDPRV--NCVITEKQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 79 i~~~~--~~v~~~~g~~i~~d~lviAtG~~p~~ 109 (454)
++.+. ..|.+.+|+++.+|.+|+|+|.+|..
T Consensus 252 i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~ 284 (493)
T 1m6i_A 252 VGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNV 284 (493)
T ss_dssp EEEETTEEEEEETTSCEEEESEEEECCCEEECC
T ss_pred EEecCCeEEEEECCCCEEECCEEEECCCCCccH
Confidence 86533 25677788899999999999998765
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=3.1e-05 Score=79.16 Aligned_cols=95 Identities=17% Similarity=0.270 Sum_probs=69.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.... .+ +.+......+.+.+ +++++.+ ++..++
T Consensus 152 ~~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~-----~~-----~~~~~~~l~~~l~~~GV~i~~~~~v~~i~ 219 (565)
T 3ntd_A 152 EHATVVGGGFIGLEMMESLHHL--GIKTTLLELADQVMT-----PV-----DREMAGFAHQAIRDQGVDLRLGTALSEVS 219 (565)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSSSCT-----TS-----CHHHHHHHHHHHHHTTCEEEETCCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCcEEEEEcCCccch-----hc-----CHHHHHHHHHHHHHCCCEEEeCCeEEEEe
Confidence 3799999999999999999998 899999999764311 11 11223333445555 9999854 888876
Q ss_pred Cc-------------------c--cEEEeccCcEEEecEEEEecCCCCCC
Q psy1545 81 PR-------------------V--NCVITEKQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~-------------------~--~~v~~~~g~~i~~d~lviAtG~~p~~ 109 (454)
.+ . ..+.+.+|+++.+|.+|+|+|.+|..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 269 (565)
T 3ntd_A 220 YQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPET 269 (565)
T ss_dssp EECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred ccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccch
Confidence 51 2 24566788899999999999988764
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=3.2e-05 Score=77.00 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=37.6
Q ss_pred cCCceE--EEeCceEEEEEcCCCCccceEEEecC---C--cEEecCEEEEeec--cCcCcc
Q psy1545 227 RDTKIT--IEYSCEVERIVDSEDDTCNAYVKLTN---G--HTHACDIVVSAIG--VVPNSN 278 (454)
Q Consensus 227 ~~~gv~--i~~~~~v~~i~~~~~~~~~~~v~~~~---g--~~~~~D~vi~a~G--~~p~~~ 278 (454)
++.|++ +++++.|++++..++ ...+.|.+.+ | .++.+|.||+|+| ..|+.+
T Consensus 112 ~~~gv~~~i~~~~~V~~v~~~~~-~~~~~V~~~~~~~g~~~~~~~d~VVvAtG~~s~p~~p 171 (464)
T 2xve_A 112 EKAGVRKYIRFNTAVRHVEFNED-SQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVP 171 (464)
T ss_dssp HHHTCGGGEECSEEEEEEEEETT-TTEEEEEEEETTTTEEEEEEESEEEECCCSSSSBCCC
T ss_pred HHcCCcceEEeCCEEEEEEEcCC-CCcEEEEEEEcCCCceEEEEcCEEEECCCCCCCCccC
Confidence 445887 899999999986542 2245676655 4 5789999999999 677654
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=4.1e-05 Score=76.31 Aligned_cols=94 Identities=15% Similarity=0.260 Sum_probs=70.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+-. + +.++.....+.+.+ +++++.+ ++..++
T Consensus 177 ~~vvViGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l~------~-----~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 243 (467)
T 1zk7_A 177 ERLAVIGSSVVALELAQAFARL--GSKVTVLARNTLFFR------E-----DPAIGEAVTAAFRAEGIEVLEHTQASQVA 243 (467)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCTTTT------S-----CHHHHHHHHHHHHHTTCEEETTCCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCEEEEEEECCccCC------C-----CHHHHHHHHHHHHhCCCEEEcCCEEEEEE
Confidence 4799999999999999999998 889999999775311 1 12233444455555 9999865 888887
Q ss_pred Cccc--EEEeccCcEEEecEEEEecCCCCCCC
Q psy1545 81 PRVN--CVITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~~--~v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
.+.. .+.++ +.++.+|.+|+|+|.+|...
T Consensus 244 ~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~ 274 (467)
T 1zk7_A 244 HMDGEFVLTTT-HGELRADKLLVATGRTPNTR 274 (467)
T ss_dssp EETTEEEEEET-TEEEEESEEEECSCEEESCT
T ss_pred EeCCEEEEEEC-CcEEEcCEEEECCCCCcCCC
Confidence 5543 34554 56899999999999987753
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.88 E-value=5.3e-05 Score=76.04 Aligned_cols=97 Identities=18% Similarity=0.168 Sum_probs=70.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.... . .+.+......+.+.+ +++++.+ ++..+.
T Consensus 199 ~~vvViGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l~-----~-----~d~~~~~~l~~~l~~~gV~v~~~~~v~~i~ 266 (491)
T 3urh_A 199 ASMIVVGGGVIGLELGSVWARL--GAKVTVVEFLDTILG-----G-----MDGEVAKQLQRMLTKQGIDFKLGAKVTGAV 266 (491)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSSSSSS-----S-----SCHHHHHHHHHHHHHTTCEEECSEEEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCEEEEEeccccccc-----c-----CCHHHHHHHHHHHHhCCCEEEECCeEEEEE
Confidence 4699999999999999999998 889999998875421 1 112233344455555 9999865 888886
Q ss_pred Cccc--EEEecc---C--cEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVN--CVITEK---Q--NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~--~v~~~~---g--~~i~~d~lviAtG~~p~~~~ 111 (454)
.+.. .+.+.+ | +++.+|.+|+|+|.+|....
T Consensus 267 ~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~ 304 (491)
T 3urh_A 267 KSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDG 304 (491)
T ss_dssp EETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTT
T ss_pred EeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCc
Confidence 5443 344442 4 57999999999999887653
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.8e-05 Score=73.76 Aligned_cols=111 Identities=12% Similarity=0.148 Sum_probs=68.3
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccccc-CCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFL-DPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPS 211 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~-d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (454)
..+++|||+|+.|+.+|..|. |.+|+++++.. +-..+. ..... ....+...
T Consensus 14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~-------------------------~~~~~~~~ 67 (335)
T 2a87_A 14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS-FGGALMTTTDVE-------------------------NYPGFRNG 67 (335)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSS-CSCGGGSCSCBC-------------------------CSTTCTTC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCceeccchhh-------------------------hcCCCCCC
Confidence 468999999999999999886 99999998531 111000 00000 00000000
Q ss_pred CC-CccccccccccCccCCceEEEeCceEEEEEcCCCCccceEE-EecCCcEEecCEEEEeeccCcCcc
Q psy1545 212 LG-PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYV-KLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 212 l~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v-~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
+. +++... +.+.+++.|++++.++ +.+++..+ .+.+ .+++|+++.+|.||+|+|.+|...
T Consensus 68 ~~~~~~~~~--l~~~~~~~~v~~~~~~-v~~i~~~~----~~~v~~~~~g~~~~~d~lviAtG~~~~~~ 129 (335)
T 2a87_A 68 ITGPELMDE--MREQALRFGADLRMED-VESVSLHG----PLKSVVTADGQTHRARAVILAMGAAARYL 129 (335)
T ss_dssp BCHHHHHHH--HHHHHHHTTCEEECCC-EEEEECSS----SSEEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred CCHHHHHHH--HHHHHHHcCCEEEEee-EEEEEeCC----cEEEEEeCCCCEEEeCEEEECCCCCccCC
Confidence 00 011111 1222345799999986 88887622 3566 777888899999999999988654
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.87 E-value=4.8e-05 Score=73.06 Aligned_cols=101 Identities=20% Similarity=0.189 Sum_probs=65.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-cccchhhhHHHHHhc-C-cEEEcc-eEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-SDITVEETDANKFEG-L-CTVIVD-TVAA 78 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~-i~~~~~-~v~~ 78 (454)
.+|+|||||..|+.+|..|++. +.+|+++++.+.... +.+.... ..........+.+.+ + ++++.+ ++..
T Consensus 167 ~~vvVvG~G~~g~e~a~~l~~~--g~~V~lv~~~~~~~~----~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~~ 240 (369)
T 3d1c_A 167 GQYVVIGGNESGFDAAYQLAKN--GSDIALYTSTTGLND----PDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKD 240 (369)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECC--------------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEEE
T ss_pred CEEEEECCCcCHHHHHHHHHhc--CCeEEEEecCCCCCC----CCCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEEEE
Confidence 3799999999999999999998 889999999865421 0010000 011122333444555 6 999855 8888
Q ss_pred Ee--CcccEEEeccCcEEE-ecEEEEecCCCCCC
Q psy1545 79 ID--PRVNCVITEKQNRIK-YKTLCICTGASPRK 109 (454)
Q Consensus 79 i~--~~~~~v~~~~g~~i~-~d~lviAtG~~p~~ 109 (454)
++ .+...+.+.+|+.+. +|.+|+|||.+|..
T Consensus 241 i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~ 274 (369)
T 3d1c_A 241 IDFNNGQYHISFDSGQSVHTPHEPILATGFDATK 274 (369)
T ss_dssp EEEETTEEEEEESSSCCEEESSCCEECCCBCGGG
T ss_pred EEecCCceEEEecCCeEeccCCceEEeeccCCcc
Confidence 84 333356777887665 59999999998765
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.86 E-value=5.4e-05 Score=75.35 Aligned_cols=96 Identities=15% Similarity=0.171 Sum_probs=72.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..+++. +.+|+++++.+... +.+ +.+......+.+.+ +++++.+ .+..++
T Consensus 171 ~~v~ViGgG~~g~e~A~~l~~~--g~~Vt~v~~~~~~l-----~~~-----~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 238 (463)
T 4dna_A 171 ESILIAGGGYIAVEFANIFHGL--GVKTTLIYRGKEIL-----SRF-----DQDMRRGLHAAMEEKGIRILCEDIIQSVS 238 (463)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSS-----TTS-----CHHHHHHHHHHHHHTTCEEECSCCEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEEcCCccc-----ccc-----CHHHHHHHHHHHHHCCCEEECCCEEEEEE
Confidence 4799999999999999999998 88999999987531 111 12233444455555 9999864 888887
Q ss_pred Ccc---cEEE-eccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRV---NCVI-TEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~---~~v~-~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
.+. ..|. +.+|+ +.+|.+|+|+|.+|....
T Consensus 239 ~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~ 272 (463)
T 4dna_A 239 ADADGRRVATTMKHGE-IVADQVMLALGRMPNTNG 272 (463)
T ss_dssp ECTTSCEEEEESSSCE-EEESEEEECSCEEESCTT
T ss_pred EcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCCC
Confidence 642 2577 77787 999999999999887653
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.86 E-value=4.3e-05 Score=71.89 Aligned_cols=110 Identities=13% Similarity=0.072 Sum_probs=67.0
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccccc-CCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFL-DPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPS 211 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~-d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (454)
..+++|||+|+.|+.+|..|+ |.+|+++++.. +-.... ..... ....+ ..
T Consensus 16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~-------------------------~~~~~-~~ 68 (319)
T 3cty_A 16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAV-AGGLTAEAPLVE-------------------------NYLGF-KS 68 (319)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTGGGGGCSCBC-------------------------CBTTB-SS
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC-CCccccccchhh-------------------------hcCCC-cc
Confidence 358999999999999999886 99999999842 111000 00000 00000 00
Q ss_pred CC-CccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 212 LG-PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 212 l~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
+. .++.. .+.+.+++.|++++. ..+.++...++ .+.+.+ ++.++.+|.+|+|+|..|...
T Consensus 69 ~~~~~~~~--~~~~~~~~~~v~~~~-~~v~~i~~~~~---~~~v~~-~~~~~~~~~li~AtG~~~~~~ 129 (319)
T 3cty_A 69 IVGSELAK--LFADHAANYAKIREG-VEVRSIKKTQG---GFDIET-NDDTYHAKYVIITTGTTHKHL 129 (319)
T ss_dssp BCHHHHHH--HHHHHHHTTSEEEET-CCEEEEEEETT---EEEEEE-SSSEEEEEEEEECCCEEECCC
T ss_pred cCHHHHHH--HHHHHHHHcCCEEEE-eeEEEEEEeCC---EEEEEE-CCCEEEeCEEEECCCCCcccC
Confidence 00 00000 012233557999988 68888876542 345655 566899999999999987654
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=97.85 E-value=4.4e-05 Score=76.20 Aligned_cols=97 Identities=15% Similarity=0.247 Sum_probs=70.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. ++.+|+++++.+.... . ..+.++.....+.+.+ +++++.+ ++..++
T Consensus 160 ~~vvViGgG~~g~e~A~~l~~~-~g~~Vtlv~~~~~~l~--------~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~ 229 (472)
T 3iwa_A 160 SKAVIVGGGFIGLEMAVSLADM-WGIDTTVVELADQIMP--------G-FTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE 229 (472)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH-HCCEEEEECSSSSSST--------T-TSCHHHHHHHHHHHHHTTCEEECSCCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHh-cCCcEEEEEccCcccc--------c-ccCHHHHHHHHHHHHhcCCEEEeCCEEEEEE
Confidence 4799999999999999999986 2679999998764311 0 0112233344455555 9999865 888887
Q ss_pred Cccc--EEEeccCcEEEecEEEEecCCCCCC
Q psy1545 81 PRVN--CVITEKQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~~~--~v~~~~g~~i~~d~lviAtG~~p~~ 109 (454)
.++. .+.+.+|+++.+|.+|+|+|.+|..
T Consensus 230 ~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~ 260 (472)
T 3iwa_A 230 GENGKVARVITDKRTLDADLVILAAGVSPNT 260 (472)
T ss_dssp ESSSBEEEEEESSCEEECSEEEECSCEEECC
T ss_pred ccCCeEEEEEeCCCEEEcCEEEECCCCCcCH
Confidence 6332 4667788899999999999988764
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=3.8e-05 Score=76.06 Aligned_cols=51 Identities=24% Similarity=0.197 Sum_probs=41.6
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
.+.+++.||++++++.|+++..++ +..+.|.+++|+++.+|.||+|+|..+
T Consensus 141 ~~~~~~~GV~i~~~~~V~~i~~~~--~~v~~V~~~~G~~i~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 141 LTRLKDLGVKIRTNTPVETIEYEN--GQTKAVILQTGEVLETNHVVIAVGGKS 191 (447)
T ss_dssp HHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred HHHHHHCCCEEEeCcEEEEEEecC--CcEEEEEECCCCEEECCEEEECCCCCc
Confidence 344566899999999999998644 234678888887899999999999987
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=6.8e-05 Score=74.89 Aligned_cols=97 Identities=15% Similarity=0.190 Sum_probs=71.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. .+ +.+......+.+.+ +++++.+ ++..++
T Consensus 181 ~~v~ViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~-----~~-----~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~ 248 (476)
T 3lad_A 181 GKLGVIGAGVIGLELGSVWARL--GAEVTVLEAMDKFLP-----AV-----DEQVAKEAQKILTKQGLKILLGARVTGTE 248 (476)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSSSST-----TS-----CHHHHHHHHHHHHHTTEEEEETCEEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCc-----cc-----CHHHHHHHHHHHHhCCCEEEECCEEEEEE
Confidence 4699999999999999999998 899999999875421 11 12233444455555 9999855 888887
Q ss_pred Cccc--EEEeccC---cEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVN--CVITEKQ---NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~--~v~~~~g---~~i~~d~lviAtG~~p~~~~ 111 (454)
.+.. .+.+.++ +.+.+|.+|+|+|.+|....
T Consensus 249 ~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~ 284 (476)
T 3lad_A 249 VKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTD 284 (476)
T ss_dssp ECSSCEEEEEESSSEEEEEEESEEEECSCEEECCTT
T ss_pred EcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCCC
Confidence 5443 4555544 57999999999999887643
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.84 E-value=8.5e-06 Score=81.17 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=35.5
Q ss_pred eEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccC
Q psy1545 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVV 274 (454)
Q Consensus 231 v~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~ 274 (454)
++|++++.|++|+.+++ .+.|.+++|+++.+|.||+|++..
T Consensus 248 ~~i~~~~~V~~i~~~~~---~~~v~~~~g~~~~ad~vi~a~p~~ 288 (470)
T 3i6d_A 248 TKVYKGTKVTKLSHSGS---CYSLELDNGVTLDADSVIVTAPHK 288 (470)
T ss_dssp EEEECSCCEEEEEECSS---SEEEEESSSCEEEESEEEECSCHH
T ss_pred CEEEeCCceEEEEEcCC---eEEEEECCCCEEECCEEEECCCHH
Confidence 79999999999987653 477888999889999999998764
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=5.1e-05 Score=78.97 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=32.0
Q ss_pred cccEEEECCCHHHHHHHHHHhh-----cCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAF-----LHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~-----~~~g~~v~lie~~~~ 38 (454)
++||+|||||++|+++|..|++ . |.+|+|||+.+.
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~--Gi~v~viE~~~~ 47 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKP--DLKVRIIDKRST 47 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHST--TCCEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccC--CCCEEEEeCCCC
Confidence 4799999999999999999999 7 999999998743
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=97.82 E-value=8.1e-05 Score=72.28 Aligned_cols=134 Identities=19% Similarity=0.288 Sum_probs=75.8
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc------cccccCCcchhhhHHHhhccCCCChhhhh-----hhccc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI------SATFLDPGAAEFFQDSINKTNTAKPETIF-----KRMRY 202 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~------~~~~~d~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~ 202 (454)
.+|+|||||+.|+.+|..|+ |.+|+++++.+.. ....+.+...+.+.+ + .. ...... ....+
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~-l---g~-~~~~~~~~~~~~~~~~ 77 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLRE-A---GV-DRRMARDGLVHEGVEI 77 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHH-T---TC-CHHHHHHCEEESCEEE
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHH-c---CC-cHHHHhcCCccceEEE
Confidence 36999999999999999997 9999999987642 111122221111111 0 00 000000 00001
Q ss_pred ccCCC-----C----CCCC----C-CccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEe-cCCc--EEecC
Q psy1545 203 NTGGE-----K----GPSL----G-PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL-TNGH--THACD 265 (454)
Q Consensus 203 ~~~~~-----~----~~~l----~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~-~~g~--~~~~D 265 (454)
..... . .... . ..+.. .+.+.+.+.|++++++++|++++.+++ ..+.+.+ ++|+ ++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~L~~~~~~~g~~i~~~~~v~~i~~~~~--~~~~v~~~~~g~~~~~~a~ 153 (394)
T 1k0i_A 78 AFAGQRRRIDLKRLSGGKTVTVYGQTEVTR--DLMEAREACGATTVYQAAEVRLHDLQG--ERPYVTFERDGERLRLDCD 153 (394)
T ss_dssp EETTEEEEECHHHHHTSCCEEECCHHHHHH--HHHHHHHHTTCEEESSCEEEEEECTTS--SSCEEEEEETTEEEEEECS
T ss_pred EECCceEEeccccccCCCceEEechHHHHH--HHHHHHHhcCCeEEeceeEEEEEEecC--CceEEEEecCCcEEEEEeC
Confidence 00000 0 0000 0 01111 123334456999999999999987532 2456777 6886 79999
Q ss_pred EEEEeeccCcCcc
Q psy1545 266 IVVSAIGVVPNSN 278 (454)
Q Consensus 266 ~vi~a~G~~p~~~ 278 (454)
+||.|.|......
T Consensus 154 ~vV~AdG~~S~vr 166 (394)
T 1k0i_A 154 YIAGCDGFHGISR 166 (394)
T ss_dssp EEEECCCTTCSTG
T ss_pred EEEECCCCCcHHH
Confidence 9999999987654
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=97.80 E-value=7.1e-05 Score=74.82 Aligned_cols=96 Identities=18% Similarity=0.153 Sum_probs=69.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+. +.+ +.+......+.+.+ +++++.+ ++..++
T Consensus 188 ~~vvViGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l-----~~~-----d~~~~~~~~~~l~~~gv~i~~~~~v~~i~ 255 (478)
T 3dk9_A 188 GRSVIVGAGYIAVEMAGILSAL--GSKTSLMIRHDKVL-----RSF-----DSMISTNCTEELENAGVEVLKFSQVKEVK 255 (478)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSC-----TTS-----CHHHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ccEEEECCCHHHHHHHHHHHHc--CCeEEEEEeCCccc-----ccc-----CHHHHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence 4799999999999999999998 89999999876531 111 12233344455555 9999865 788886
Q ss_pred Cc--c--cEEEecc-------CcEEEecEEEEecCCCCCCC
Q psy1545 81 PR--V--NCVITEK-------QNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~--~--~~v~~~~-------g~~i~~d~lviAtG~~p~~~ 110 (454)
.. . ..+.+.+ |..+.+|.+|+|+|.+|...
T Consensus 256 ~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~ 296 (478)
T 3dk9_A 256 KTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK 296 (478)
T ss_dssp ECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCT
T ss_pred EcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCC
Confidence 43 2 2355543 25799999999999988765
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.79 E-value=1.2e-05 Score=79.43 Aligned_cols=36 Identities=22% Similarity=0.123 Sum_probs=32.2
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
|++||+|||||++|+++|..|++. |.+|+|||+.+.
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~--G~~V~viE~~~~ 56 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQH--DVDVTVYTDRKP 56 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHT--TCEEEEEESCCG
T ss_pred CCCCEEEECCcHHHHHHHHHHHHC--CCeEEEEcCCCh
Confidence 567999999999999999999998 999999999863
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.79 E-value=1.7e-05 Score=77.93 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=39.0
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
+.+++.|++|++++.|+++..+++ .+ | ..+|+++++|.||+|+|......
T Consensus 197 ~~~~~~G~~i~~~~~V~~i~~~~~---~v-V-~~~g~~~~ad~Vv~a~~~~~~~~ 246 (421)
T 3nrn_A 197 RIIMENKGKILTRKEVVEINIEEK---KV-Y-TRDNEEYSFDVAISNVGVRETVK 246 (421)
T ss_dssp HHHHTTTCEEESSCCEEEEETTTT---EE-E-ETTCCEEECSEEEECSCHHHHHH
T ss_pred HHHHHCCCEEEcCCeEEEEEEECC---EE-E-EeCCcEEEeCEEEECCCHHHHHH
Confidence 334568999999999999997653 34 4 56778899999999999865443
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=97.79 E-value=4.5e-05 Score=74.75 Aligned_cols=140 Identities=15% Similarity=0.138 Sum_probs=76.0
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc---ccccCCcchhhhHHH-----hhccCCCChhhhh-----hhc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS---ATFLDPGAAEFFQDS-----INKTNTAKPETIF-----KRM 200 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~---~~~~d~~~~~~~~~~-----l~~~~~~~~~~~~-----~~~ 200 (454)
.+|+|||||+.|+-+|..|+ |.+|+++++.+... ...+.+.....+... +.+.......... ...
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEIA 85 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCeeE
Confidence 58999999999999999986 99999999875321 111222222222111 1100000000000 000
Q ss_pred ccccCCCCCCCCCCc--cccc---cccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCc--EEecCEEEEeecc
Q psy1545 201 RYNTGGEKGPSLGPD--WHTQ---VNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGH--THACDIVVSAIGV 273 (454)
Q Consensus 201 ~~~~~~~~~~~l~~~--~~~~---~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~--~~~~D~vi~a~G~ 273 (454)
.+.+........... +.+. ..+.+.+++.|++++.++.|++++.+++ +..+.+...+|+ ++.+|+||.|+|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~-~~~v~v~~~~g~~~~~~a~~vV~A~G~ 164 (421)
T 3nix_A 86 DFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGT-DSVTTIEDINGNKREIEARFIIDASGY 164 (421)
T ss_dssp EEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETT-EEEEEEEETTSCEEEEEEEEEEECCGG
T ss_pred EEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCC-EEEEEEEcCCCCEEEEEcCEEEECCCC
Confidence 000111111000000 0000 0023334556999999999999987653 334566678886 7999999999998
Q ss_pred CcC
Q psy1545 274 VPN 276 (454)
Q Consensus 274 ~p~ 276 (454)
.+.
T Consensus 165 ~s~ 167 (421)
T 3nix_A 165 GRV 167 (421)
T ss_dssp GCH
T ss_pred chh
Confidence 763
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=97.79 E-value=1.9e-05 Score=78.42 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=36.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK 44 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~ 44 (454)
++||||||||++|++||..|++. |++|+|+|+++..++...
T Consensus 11 ~~dvvVIGaG~~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~ 51 (453)
T 2bcg_G 11 DYDVIVLGTGITECILSGLLSVD--GKKVLHIDKQDHYGGEAA 51 (453)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCGGGC
T ss_pred cCCEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCCCCCcccc
Confidence 37999999999999999999998 999999999998876543
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=5.7e-05 Score=75.63 Aligned_cols=95 Identities=18% Similarity=0.157 Sum_probs=68.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++...+. .+ +.+......+.+.+ +++++.+ ++..+.
T Consensus 188 ~~vvViGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~l~------~~-----d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 254 (483)
T 3dgh_A 188 GKTLVVGAGYIGLECAGFLKGL--GYEPTVMVRSIVLR------GF-----DQQMAELVAASMEERGIPFLRKTVPLSVE 254 (483)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSCSST------TS-----CHHHHHHHHHHHHHTTCCEEETEEEEEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCCCCc------cc-----CHHHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 4699999999999999999998 89999998753221 11 12333444555666 9999865 788886
Q ss_pred Ccc---cEEEeccCc-----EEEecEEEEecCCCCCCC
Q psy1545 81 PRV---NCVITEKQN-----RIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~---~~v~~~~g~-----~i~~d~lviAtG~~p~~~ 110 (454)
... ..|.+.++. ++.+|.+++|+|.+|...
T Consensus 255 ~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~ 292 (483)
T 3dgh_A 255 KQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVD 292 (483)
T ss_dssp ECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCG
T ss_pred EcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcC
Confidence 532 245555543 799999999999887654
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=9.5e-05 Score=73.50 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=66.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccc---------------ccccc-------------cc-
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTV---------------PVTKL-------------LS- 53 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~---------------~~~~~-------------~~- 53 (454)
.+|+|||||..|+-+|..|++..++.+|+++++.+.+......+ .++.. +.
T Consensus 228 ~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 307 (463)
T 3s5w_A 228 MKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSV 307 (463)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSC
T ss_pred CeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCc
Confidence 47999999999999999999987788999999987541100000 00000 00
Q ss_pred -ccchhhh-----HHHHHhc--CcEEEcc-eEEEEeCccc--EEEec---cCc--EEEecEEEEecCCCCC
Q psy1545 54 -DITVEET-----DANKFEG--LCTVIVD-TVAAIDPRVN--CVITE---KQN--RIKYKTLCICTGASPR 108 (454)
Q Consensus 54 -~~~~~~~-----~~~~~~~--~i~~~~~-~v~~i~~~~~--~v~~~---~g~--~i~~d~lviAtG~~p~ 108 (454)
..+.... +.+.+.. +++++.+ +++.+..+.. .+.+. +|+ ++.+|.||+|||.+|.
T Consensus 308 ~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~ 378 (463)
T 3s5w_A 308 VDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQ 378 (463)
T ss_dssp BCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECC
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCC
Confidence 0000000 1112222 8888865 7777765443 45554 565 4999999999999887
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=2.1e-05 Score=77.29 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=35.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCC-CeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPG-ESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g-~~v~lie~~~~~~~~ 42 (454)
++||+|||||++|++||..|++. | .+|+|+|+++..++.
T Consensus 6 ~~~v~IIGaG~aGl~aA~~L~~~--g~~~v~v~E~~~~~GG~ 45 (424)
T 2b9w_A 6 DSRIAIIGAGPAGLAAGMYLEQA--GFHDYTILERTDHVGGK 45 (424)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHT--TCCCEEEECSSSCSSTT
T ss_pred CCCEEEECcCHHHHHHHHHHHhC--CCCcEEEEECCCCCCCc
Confidence 47999999999999999999998 7 899999998877653
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=7.1e-05 Score=70.09 Aligned_cols=117 Identities=13% Similarity=0.055 Sum_probs=65.6
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLG 213 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 213 (454)
..++|||+|+.|+.+|..++ |.+|+++++...--.. .... +.. ...+.....+...+.
T Consensus 5 yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~-~~G~--------~~~-----------~~~i~~~~g~~~~i~ 64 (314)
T 4a5l_A 5 HDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVA-AGGQ--------LTT-----------TTIIENFPGFPNGID 64 (314)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCC-TTCG--------GGG-----------SSEECCSTTCTTCEE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcc-cCCC--------cCC-----------hHHhhhccCCcccCC
Confidence 46999999999999998875 9999999875421000 0000 000 000000000000000
Q ss_pred -CccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 214 -PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 214 -~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
+++... +.+..++.++++..+ .+.......+ ...+...++.++.+|.+|+|||.+|...
T Consensus 65 ~~~l~~~--~~~~~~~~~~~~~~~-~v~~~~~~~~---~~~~~~~~~~~~~~~~liiATG~~~~~~ 124 (314)
T 4a5l_A 65 GNELMMN--MRTQSEKYGTTIITE-TIDHVDFSTQ---PFKLFTEEGKEVLTKSVIIATGATAKRM 124 (314)
T ss_dssp HHHHHHH--HHHHHHHTTCEEECC-CEEEEECSSS---SEEEEETTCCEEEEEEEEECCCEEECCC
T ss_pred HHHHHHH--HHHHHhhcCcEEEEe-EEEEeecCCC---ceEEEECCCeEEEEeEEEEccccccccc
Confidence 001000 122234577887766 4555554432 4567778888999999999999988754
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=8.3e-05 Score=74.53 Aligned_cols=96 Identities=15% Similarity=0.118 Sum_probs=68.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+. .+ +.++.....+.+.+ +++++.+ .+..+.
T Consensus 186 ~~vvViGgG~ig~E~A~~l~~~--g~~Vtlv~~~~~l~------~~-----d~~~~~~l~~~l~~~gv~~~~~~~v~~i~ 252 (488)
T 3dgz_A 186 GKTLVVGASYVALECAGFLTGI--GLDTTVMMRSIPLR------GF-----DQQMSSLVTEHMESHGTQFLKGCVPSHIK 252 (488)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCSST------TS-----CHHHHHHHHHHHHHTTCEEEETEEEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCceEEEEcCcccc------cC-----CHHHHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence 4699999999999999999998 89999998864321 11 12233444555666 9999865 777775
Q ss_pred Cc---ccEEEecc---Cc--EEEecEEEEecCCCCCCCC
Q psy1545 81 PR---VNCVITEK---QN--RIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~---~~~v~~~~---g~--~i~~d~lviAtG~~p~~~~ 111 (454)
.. ...+.+.+ |+ ++.+|.+++|+|.+|....
T Consensus 253 ~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~ 291 (488)
T 3dgz_A 253 KLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRT 291 (488)
T ss_dssp ECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGG
T ss_pred EcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCc
Confidence 42 22454443 44 4789999999998877643
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00013 Score=71.05 Aligned_cols=139 Identities=15% Similarity=0.199 Sum_probs=75.5
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc----c--CCcc-hhhhHH-----HhhccCCCChhhhhhh-
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF----L--DPGA-AEFFQD-----SINKTNTAKPETIFKR- 199 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~----~--d~~~-~~~~~~-----~l~~~~~~~~~~~~~~- 199 (454)
..+|+|||||+.|+.+|..|+ |.+|+++++.+....+. + .+.. .+.+.. .+..............
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 105 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEK 105 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECCC
Confidence 468999999999999999996 99999999987543211 1 1111 111111 0100000000000000
Q ss_pred cccccCC--CC-CCCCCCccccc-c--ccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc
Q psy1545 200 MRYNTGG--EK-GPSLGPDWHTQ-V--NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273 (454)
Q Consensus 200 ~~~~~~~--~~-~~~l~~~~~~~-~--~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~ 273 (454)
-...... +. .....+.+.+. + .+.+.+. +++++++++|++++.+++ .+.+++++|+++.+|+||.|.|.
T Consensus 106 g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~---~v~v~~~~g~~~~ad~vV~AdG~ 180 (398)
T 2xdo_A 106 GNILSTKNVKPENRFDNPEINRNDLRAILLNSLE--NDTVIWDRKLVMLEPGKK---KWTLTFENKPSETADLVILANGG 180 (398)
T ss_dssp SEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSC--TTSEEESCCEEEEEECSS---SEEEEETTSCCEEESEEEECSCT
T ss_pred CCchhhccccccCCCCCceECHHHHHHHHHhhcC--CCEEEECCEEEEEEECCC---EEEEEECCCcEEecCEEEECCCc
Confidence 0000000 00 00000111110 0 0122222 367899999999987653 46788899988999999999999
Q ss_pred CcCcc
Q psy1545 274 VPNSN 278 (454)
Q Consensus 274 ~p~~~ 278 (454)
.....
T Consensus 181 ~S~vR 185 (398)
T 2xdo_A 181 MSKVR 185 (398)
T ss_dssp TCSCC
T ss_pred chhHH
Confidence 87654
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=97.74 E-value=2.4e-05 Score=78.13 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=35.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
++||+|||||++|+++|+.|++.+++.+|+|+|+++..++
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG 43 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGG 43 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBT
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCc
Confidence 5899999999999999999999944499999999877654
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=2.3e-05 Score=79.15 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=35.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCC-CeEEEECCCCcccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPG-ESIGLVTPSGIVKAVT 43 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g-~~v~lie~~~~~~~~~ 43 (454)
++||+|||||++||+||..|++. | .+|+|+|+++.+++..
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~--G~~~V~VlEa~~riGGr~ 48 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQN--GIQDCLVLEARDRVGGRL 48 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHT--TCCSEEEECSSSSSBTTC
T ss_pred CCcEEEECCCHHHHHHHHHHHhc--CCCCEEEEeCCCCCCCce
Confidence 47999999999999999999998 7 8999999998877643
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=3.4e-05 Score=74.76 Aligned_cols=40 Identities=33% Similarity=0.488 Sum_probs=35.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT 43 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~ 43 (454)
++|++|||||++|+++|..|++. |.+|+|+|+.+..++..
T Consensus 29 ~~dv~IIGaG~aGl~aA~~l~~~--g~~v~v~E~~~~~GG~~ 68 (397)
T 3hdq_A 29 GFDYLIVGAGFAGSVLAERLASS--GQRVLIVDRRPHIGGNA 68 (397)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSSGGG
T ss_pred CCCEEEECccHHHHHHHHHHHHC--CCceEEEeccCCCCCcc
Confidence 47999999999999999999998 89999999998776543
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=9.3e-05 Score=75.21 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=69.6
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccccc---CCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFL---DPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP 210 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~---d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (454)
.+++|||+|+.|+.+|..|. |.+|+++++.+.+-..+. .|...-.....+-. ..-... +..... ...
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~-~~f~~~-~~~~~~------~~~ 88 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYC-YSFSEE-VLQEWN------WTE 88 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSS-CCSCHH-HHHHCC------CCB
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccc-cccChh-hhhccC------ccc
Confidence 47999999999999999986 999999998765422110 00000000000000 000000 000000 000
Q ss_pred CC--CCccccccccccCccC--CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccC
Q psy1545 211 SL--GPDWHTQVNLHGSSRD--TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVV 274 (454)
Q Consensus 211 ~l--~~~~~~~~~~~~~l~~--~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~ 274 (454)
.+ .+++...+ ....++ .+++++++++|.+++.+++ ...+.|.+++|+++.+|.||+|+|..
T Consensus 89 ~~~~~~~i~~yl--~~~~~~~~l~~~i~~~~~V~~~~~~~~-~~~w~V~~~~G~~~~ad~vV~AtG~~ 153 (542)
T 1w4x_A 89 RYASQPEILRYI--NFVADKFDLRSGITFHTTVTAAAFDEA-TNTWTVDTNHGDRIRARYLIMASGQL 153 (542)
T ss_dssp SSCBHHHHHHHH--HHHHHHTTGGGGEECSCCEEEEEEETT-TTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred ccCCHHHHHHHH--HHHHHHcCCCceEEcCcEEEEEEEcCC-CCeEEEEECCCCEEEeCEEEECcCCC
Confidence 00 01111111 111122 3467889999999886542 23577888899889999999999964
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00019 Score=73.35 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=44.9
Q ss_pred EecCCCCCC-CCCC----CceeeeeccchHHHHHHHhh----cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 101 ICTGASPRK-IWYS----PHVITIRDTDSVAVLQEKLK----SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 101 iAtG~~p~~-~~~~----~~~~~~~~~~~~~~l~~~~~----~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
.|+.+.... +++| .+...+....+...+...+. ..-.|+|||+|..|+.+|..++ |.+|+++++.+.+
T Consensus 78 ~c~~ch~~~~~~~p~~~~~~~~~w~~~~~~~~i~~~i~~~~~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~ 156 (566)
T 1qo8_A 78 YCNECHSFDIKPMPFSDAKKKKSWDDGWDQDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS 156 (566)
T ss_dssp GGGGTCCCCCCCCTTTTSCCCCCSCCCCCHHHHHHHHHTCCSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred hhhhhcCCCcCCCCCCCCCCCcccccccccHHHHHhhccCCCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 466665444 4444 23444444444444433333 2347999999999999999886 9999999987754
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.66 E-value=4.1e-05 Score=74.65 Aligned_cols=41 Identities=15% Similarity=0.301 Sum_probs=35.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT 43 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~ 43 (454)
++||+|||||++|++||..|++. +|.+|+|+|+++..++..
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~~-~g~~v~v~E~~~~~GG~~ 47 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQ-LDKRVLVLERRPHIGGNA 47 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHH-SCCCEEEECSSSSSSGGG
T ss_pred cCCEEEECCCHHHHHHHHHHHHh-CCCCEEEEeCCCCCCCee
Confidence 47999999999999999999986 378999999998776543
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00015 Score=72.24 Aligned_cols=95 Identities=16% Similarity=0.189 Sum_probs=66.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhcCcEEEcc-eEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEGLCTVIVD-TVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~v~~i~~ 81 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.... . ..+.+......+.+ .++++.+ ++..++.
T Consensus 173 ~~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~--------~-~~d~~~~~~l~~~l--~v~i~~~~~v~~i~~ 239 (466)
T 3l8k_A 173 QDMVIIGAGYIGLEIASIFRLM--GVQTHIIEMLDRALI--------T-LEDQDIVNTLLSIL--KLNIKFNSPVTEVKK 239 (466)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSCT--------T-SCCHHHHHHHHHHH--CCCEECSCCEEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCEEEEEEeCCcCCC--------C-CCCHHHHHHHHhcC--EEEEEECCEEEEEEE
Confidence 4699999999999999999998 899999999775311 0 00111222222222 3787754 7888776
Q ss_pred cc---cEEEec--cCc--EEEecEEEEecCCCCCCC
Q psy1545 82 RV---NCVITE--KQN--RIKYKTLCICTGASPRKI 110 (454)
Q Consensus 82 ~~---~~v~~~--~g~--~i~~d~lviAtG~~p~~~ 110 (454)
.. ..+.+. +|+ ++.+|.+++|+|.+|...
T Consensus 240 ~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~ 275 (466)
T 3l8k_A 240 IKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIP 275 (466)
T ss_dssp EETTEEEEEECCTTSCCEEEEESCEEECCCEEECCC
T ss_pred cCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccc
Confidence 33 345555 565 799999999999988765
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=3.2e-05 Score=74.32 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||+|||||++|+++|++|++. |.+|+|+|+....
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~~--G~~V~vle~~~~~ 41 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILARK--GYSVHILARDLPE 41 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSCTT
T ss_pred CCCEEEECCCHHHHHHHHHHHhC--CCEEEEEeccCCC
Confidence 47999999999999999999998 8999999997644
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00017 Score=68.58 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=36.0
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~ 273 (454)
.|+++++++.|++++.+++ .+.|.+++|+++.+|.||+|++.
T Consensus 122 ~g~~i~~~~~V~~i~~~~~---~~~v~~~~g~~~~ad~vV~A~p~ 163 (342)
T 3qj4_A 122 SGAEVYFRHRVTQINLRDD---KWEVSKQTGSPEQFDLIVLTMPV 163 (342)
T ss_dssp HTCEEESSCCEEEEEECSS---SEEEEESSSCCEEESEEEECSCH
T ss_pred cCCEEEeCCEEEEEEEcCC---EEEEEECCCCEEEcCEEEECCCH
Confidence 4899999999999987653 47788888877899999999874
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=97.64 E-value=7.3e-05 Score=72.82 Aligned_cols=140 Identities=16% Similarity=0.210 Sum_probs=75.3
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc------cCCcchhhhHHHhh--------cc---CCCChhhh
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF------LDPGAAEFFQDSIN--------KT---NTAKPETI 196 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~------~d~~~~~~~~~~l~--------~~---~~~~~~~~ 196 (454)
-+|+|||||+.|+-+|..|+ |.+|++++|.+.+.... +.+...+.+.+... +. ........
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~ 81 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFY 81 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEe
Confidence 37999999999999999997 99999999877654310 11211222211100 00 00000000
Q ss_pred hhhcccccCC-CCCC----CCCCccc--cccccccCc-cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEE
Q psy1545 197 FKRMRYNTGG-EKGP----SLGPDWH--TQVNLHGSS-RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVV 268 (454)
Q Consensus 197 ~~~~~~~~~~-~~~~----~l~~~~~--~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi 268 (454)
....+..... .... ....... .+..+.+.| +..+..+++++++++++..++ ..+++.++||+++++|+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~--~~v~v~~~dG~~~~adlvV 159 (412)
T 4hb9_A 82 NERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIEN--GGIKIFFADGSHENVDVLV 159 (412)
T ss_dssp CTTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTT--SCEEEEETTSCEEEESEEE
T ss_pred cCCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCC--CeEEEEECCCCEEEeeEEE
Confidence 0000000000 0000 0000000 001112222 334557899999999986553 3578999999999999999
Q ss_pred EeeccCcCc
Q psy1545 269 SAIGVVPNS 277 (454)
Q Consensus 269 ~a~G~~p~~ 277 (454)
-|-|.+...
T Consensus 160 gADG~~S~v 168 (412)
T 4hb9_A 160 GADGSNSKV 168 (412)
T ss_dssp ECCCTTCHH
T ss_pred ECCCCCcch
Confidence 999987654
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=97.64 E-value=3.9e-05 Score=74.28 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=33.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
+||+|||||++|+++|..|++..||.+|+|+|+.+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~ 37 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ 37 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence 4899999999999999999998678999999998765
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00018 Score=67.25 Aligned_cols=90 Identities=14% Similarity=0.109 Sum_probs=65.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEc-ceEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIV-DTVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~-~~v~~i~ 80 (454)
.+++|||+|+.|+.+|..|++. +.+|+++++.+.+.. .... ..+.+.+ +++++. .++..++
T Consensus 148 ~~v~viG~g~~~~e~a~~l~~~--g~~v~~~~~~~~~~~------------~~~~---~~~~~~~~gv~~~~~~~v~~i~ 210 (315)
T 3r9u_A 148 KEVAVLGGGDTALEEALYLANI--CSKIYLIHRRDEFRA------------APST---VEKVKKNEKIELITSASVDEVY 210 (315)
T ss_dssp SEEEEECCBHHHHHHHHHHHTT--SSEEEEECSSSSCBS------------CHHH---HHHHHHCTTEEEECSCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhh--CCEEEEEEeCCCCCC------------CHHH---HHHHHhcCCeEEEeCcEEEEEE
Confidence 4699999999999999999998 889999998875411 0011 1122234 999984 5888887
Q ss_pred Cccc---EEEec--cCc--EEEecEEEEecCCCCCC
Q psy1545 81 PRVN---CVITE--KQN--RIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~~~---~v~~~--~g~--~i~~d~lviAtG~~p~~ 109 (454)
.+.. .+.+. +|+ ++.+|.+|+|+|.+|..
T Consensus 211 ~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~ 246 (315)
T 3r9u_A 211 GDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRN 246 (315)
T ss_dssp EETTEEEEEEEECTTSCEEEECCSCEEECSCEEECC
T ss_pred cCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCc
Confidence 6551 24443 675 79999999999987754
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=97.62 E-value=4.8e-05 Score=73.09 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=34.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC-Ccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS-GIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~-~~~~~ 41 (454)
.+||+|||||++|++||+.|++. |.+|+|+|++ +..++
T Consensus 44 ~~~V~IIGAGiaGL~aA~~L~~~--G~~V~VlE~~~~~vGG 82 (376)
T 2e1m_A 44 PKRILIVGAGIAGLVAGDLLTRA--GHDVTILEANANRVGG 82 (376)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHT--SCEEEEECSCSSCCBT
T ss_pred CceEEEECCCHHHHHHHHHHHHC--CCcEEEEeccccccCC
Confidence 36899999999999999999998 8999999998 66654
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=4.2e-05 Score=75.86 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=35.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
++||+|||||++|++||..|++. |.+|+|+|+++..++.
T Consensus 5 ~~~v~iiG~G~~Gl~aA~~l~~~--g~~v~v~E~~~~~GG~ 43 (453)
T 2yg5_A 5 QRDVAIVGAGPSGLAAATALRKA--GLSVAVIEARDRVGGR 43 (453)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCTT
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCcEEEEECCCCCCCc
Confidence 47999999999999999999998 8999999998877654
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=97.62 E-value=5.2e-05 Score=73.03 Aligned_cols=39 Identities=21% Similarity=0.509 Sum_probs=34.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
++|++|||||++|+++|..|++. |.+|+|+|+++..++.
T Consensus 1 ~~~v~iiG~G~~Gl~~A~~l~~~--g~~v~v~E~~~~~GG~ 39 (367)
T 1i8t_A 1 MYDYIIVGSGLFGAVCANELKKL--NKKVLVIEKRNHIGGN 39 (367)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGG--TCCEEEECSSSSSSGG
T ss_pred CCCEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCCCCcc
Confidence 37999999999999999999998 8999999998876543
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0002 Score=67.05 Aligned_cols=110 Identities=16% Similarity=0.113 Sum_probs=62.0
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGP 214 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 214 (454)
.++|||+|+.|+.+|..++ |.+|+++++... -.......... ....+....++
T Consensus 8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~-gG~~~~~~~i~------------------------~~p~~~~~~~~ 62 (312)
T 4gcm_A 8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIP-GGQMANTEEVE------------------------NFPGFEMITGP 62 (312)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT-TGGGGGCSCBC------------------------CSTTCSSBCHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC-CCeeecccccC------------------------CcCCccccchH
Confidence 6899999999999998886 999999987531 10000000000 00000000000
Q ss_pred ccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 215 DWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 215 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
++... ......+.++.+..+..+....... ......+++++.+|.+|+|||.+|...
T Consensus 63 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~liiAtGs~~~~~ 119 (312)
T 4gcm_A 63 DLSTK--MFEHAKKFGAVYQYGDIKSVEDKGE-----YKVINFGNKELTAKAVIIATGAEYKKI 119 (312)
T ss_dssp HHHHH--HHHHHHHTTCEEEECCCCEEEECSS-----CEEEECSSCEEEEEEEEECCCEEECCC
T ss_pred HHHHH--HHHHHhhccccccceeeeeeeeeec-----ceeeccCCeEEEeceeEEcccCccCcC
Confidence 00000 0111233566666666655555443 245566778999999999999988764
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=4.7e-05 Score=76.34 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=35.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
++||+|||||++|++||+.|++. |.+|+|+|+++..++.
T Consensus 11 ~~~v~IIGaG~aGl~aA~~L~~~--g~~v~v~E~~~~~GG~ 49 (489)
T 2jae_A 11 SHSVVVLGGGPAGLCSAFELQKA--GYKVTVLEARTRPGGR 49 (489)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSCTT
T ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCCEEEEeccCCCCCc
Confidence 47999999999999999999998 8999999999877653
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=4.6e-05 Score=73.84 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=36.0
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT 43 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~ 43 (454)
+++||+|||||++|+++|..|++. |.+|+|+|+++..++..
T Consensus 2 ~~~~v~iiG~G~~Gl~~A~~l~~~--g~~v~v~E~~~~~GG~~ 42 (384)
T 2bi7_A 2 KSKKILIVGAGFSGAVIGRQLAEK--GHQVHIIDQRDHIGGNS 42 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSSSGGG
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC--CCcEEEEEecCCcCCcc
Confidence 157999999999999999999998 89999999998776543
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00015 Score=75.96 Aligned_cols=96 Identities=17% Similarity=0.153 Sum_probs=69.6
Q ss_pred ccEEEEC--CCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEE
Q psy1545 3 FTYLIIG--GGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAA 78 (454)
Q Consensus 3 ~dvvIIG--gG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~ 78 (454)
.+++||| ||..|+.+|..|++. +.+|+++++.+..... ...........+.+.+ +++++.+ +++.
T Consensus 524 ~~VvViG~ggG~~g~e~A~~L~~~--g~~Vtlv~~~~~l~~~---------~~~~~~~~~l~~~l~~~GV~i~~~~~V~~ 592 (690)
T 3k30_A 524 KKVVVYDDDHYYLGGVVAELLAQK--GYEVSIVTPGAQVSSW---------TNNTFEVNRIQRRLIENGVARVTDHAVVA 592 (690)
T ss_dssp SEEEEEECSCSSHHHHHHHHHHHT--TCEEEEEESSSSTTGG---------GGGGTCHHHHHHHHHHTTCEEEESEEEEE
T ss_pred CEEEEEcCCCCccHHHHHHHHHhC--CCeeEEEecccccccc---------cccchhHHHHHHHHHHCCCEEEcCcEEEE
Confidence 3599999 999999999999998 8899999987654211 0001122333445555 9999865 8999
Q ss_pred EeCcccEEEe---ccCcEEEecEEEEecCCCCCC
Q psy1545 79 IDPRVNCVIT---EKQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 79 i~~~~~~v~~---~~g~~i~~d~lviAtG~~p~~ 109 (454)
++.+...+.. .+++++.+|.+|+|+|.+|..
T Consensus 593 i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~ 626 (690)
T 3k30_A 593 VGAGGVTVRDTYASIERELECDAVVMVTARLPRE 626 (690)
T ss_dssp EETTEEEEEETTTCCEEEEECSEEEEESCEEECC
T ss_pred EECCeEEEEEccCCeEEEEECCEEEECCCCCCCh
Confidence 9877655543 244579999999999987753
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0001 Score=75.15 Aligned_cols=137 Identities=16% Similarity=0.126 Sum_probs=75.4
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhcc--------CCCChhhh-hhhc---c
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKT--------NTAKPETI-FKRM---R 201 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~--------~~~~~~~~-~~~~---~ 201 (454)
..|+|||+|+.|+-+|..|+ |.+|+++++.+......-...+.....+.+.+. ........ .... .
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 129 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG 129 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence 47999999999999999997 999999998765432111111111112222110 00000000 0000 0
Q ss_pred cccCCCCCCC--CCCccccc---cccccCccCCceEEEeCceEEEEEcCCCCccceEEEe--cCC-cEEecCEEEEeecc
Q psy1545 202 YNTGGEKGPS--LGPDWHTQ---VNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL--TNG-HTHACDIVVSAIGV 273 (454)
Q Consensus 202 ~~~~~~~~~~--l~~~~~~~---~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~--~~g-~~~~~D~vi~a~G~ 273 (454)
+... ..... ..-.+.+. ..+.+.+++.|++++++++|++++.+++ .+.+.+ .+| +++.+|+||.|.|.
T Consensus 130 ~~~~-~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~---~v~v~~~~~~G~~~~~a~~vV~ADG~ 205 (570)
T 3fmw_A 130 LDFG-LVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAE---AVEVTVAGPSGPYPVRARYGVGCDGG 205 (570)
T ss_dssp CBGG-GSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSS---CEEEEEEETTEEEEEEESEEEECSCS
T ss_pred cccc-ccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC---eEEEEEEeCCCcEEEEeCEEEEcCCC
Confidence 0000 00000 00000100 0123334556999999999999987664 455666 677 78999999999998
Q ss_pred CcC
Q psy1545 274 VPN 276 (454)
Q Consensus 274 ~p~ 276 (454)
...
T Consensus 206 ~S~ 208 (570)
T 3fmw_A 206 RST 208 (570)
T ss_dssp SCH
T ss_pred Cch
Confidence 763
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00019 Score=70.03 Aligned_cols=133 Identities=18% Similarity=0.192 Sum_probs=75.9
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc----ccCCcchhhhHH-----HhhccCCCChhhhhhhcccc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT----FLDPGAAEFFQD-----SINKTNTAKPETIFKRMRYN 203 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~----~~d~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~ 203 (454)
..+|+|||||+.|+-+|..|+ |.+|+++++.+.+... .+.+...+.+.+ .+.+.... .....+.
T Consensus 23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~-----~~~~~~~ 97 (407)
T 3rp8_A 23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGP-----LRRMAYR 97 (407)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCC-----CCEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCC-----CcceEEE
Confidence 568999999999999999997 9999999998754321 111111111111 01000000 0000000
Q ss_pred cCCCCCC---------------CCCCccccc-c--ccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecC
Q psy1545 204 TGGEKGP---------------SLGPDWHTQ-V--NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACD 265 (454)
Q Consensus 204 ~~~~~~~---------------~l~~~~~~~-~--~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D 265 (454)
... .+. ...-.+... + .+.+.+.+ ++++++++|++++.+++ .+.+.+++|+++.+|
T Consensus 98 ~~~-~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~---~v~v~~~~g~~~~a~ 171 (407)
T 3rp8_A 98 DFR-SGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDAD---GVTVWFTDGSSASGD 171 (407)
T ss_dssp ETT-TCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETT---EEEEEETTSCEEEES
T ss_pred ECC-CCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCC---cEEEEEcCCCEEeeC
Confidence 000 000 000000000 0 01222233 88999999999987653 577889999999999
Q ss_pred EEEEeeccCcCcc
Q psy1545 266 IVVSAIGVVPNSN 278 (454)
Q Consensus 266 ~vi~a~G~~p~~~ 278 (454)
+||.|.|......
T Consensus 172 ~vV~AdG~~S~vr 184 (407)
T 3rp8_A 172 LLIAADGSHSALR 184 (407)
T ss_dssp EEEECCCTTCSSH
T ss_pred EEEECCCcChHHH
Confidence 9999999987654
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00014 Score=70.26 Aligned_cols=50 Identities=18% Similarity=0.148 Sum_probs=39.7
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
.+.+++.|++++.++.|+++..+++ .+.+.+++| ++.+|.||+|+|....
T Consensus 171 ~~~~~~~g~~i~~~~~v~~i~~~~~---~~~v~~~~g-~~~a~~vV~A~G~~s~ 220 (382)
T 1ryi_A 171 VKAAKMLGAEIFEHTPVLHVERDGE---ALFIKTPSG-DVWANHVVVASGVWSG 220 (382)
T ss_dssp HHHHHHTTCEEETTCCCCEEECSSS---SEEEEETTE-EEEEEEEEECCGGGTH
T ss_pred HHHHHHCCCEEEcCCcEEEEEEECC---EEEEEcCCc-eEEcCEEEECCChhHH
Confidence 3445668999999999999987653 346777777 7999999999998654
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00025 Score=71.96 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=39.8
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCC-ccceEEEecCC---cEEecCEEEEeeccCc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDD-TCNAYVKLTNG---HTHACDIVVSAIGVVP 275 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~-~~~~~v~~~~g---~~~~~D~vi~a~G~~p 275 (454)
.+.+++.|+++++++++++++.++++ ...+.+.+.++ .++.+|+||.|.|...
T Consensus 127 ~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S 183 (535)
T 3ihg_A 127 LAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS 183 (535)
T ss_dssp HHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred HHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc
Confidence 34445679999999999999875420 01466777776 7899999999999865
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=5.6e-05 Score=75.47 Aligned_cols=39 Identities=23% Similarity=0.409 Sum_probs=35.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
++||+|||||++|++||..|++. |.+|+|+|+++..++.
T Consensus 16 ~~~v~iiG~G~~Gl~aa~~l~~~--g~~v~v~E~~~~~GGr 54 (478)
T 2ivd_A 16 GMNVAVVGGGISGLAVAHHLRSR--GTDAVLLESSARLGGA 54 (478)
T ss_dssp -CCEEEECCBHHHHHHHHHHHTT--TCCEEEECSSSSSBTT
T ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEEcCCCCCce
Confidence 47999999999999999999998 8999999999877654
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=4.7e-05 Score=72.74 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=33.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcC----CCCeEEEECCCCccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLH----PGESIGLVTPSGIVK 40 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~----~g~~v~lie~~~~~~ 40 (454)
+||+|||||++|+++|++|++.+ |+.+|+|+|+.....
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~ 42 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPL 42 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGG
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCCC
Confidence 48999999999999999999984 348999999987543
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00025 Score=71.54 Aligned_cols=96 Identities=15% Similarity=0.185 Sum_probs=64.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++..... .+ +.++.....+.+.+ +|+++.+ ++..+.
T Consensus 211 ~~vvVIGgG~ig~E~A~~l~~~--G~~Vtlv~~~~~l~------~~-----d~~~~~~~~~~l~~~GV~v~~~~~v~~v~ 277 (519)
T 3qfa_A 211 GKTLVVGASYVALECAGFLAGI--GLDVTVMVRSILLR------GF-----DQDMANKIGEHMEEHGIKFIRQFVPIKVE 277 (519)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCSST------TS-----CHHHHHHHHHHHHHTTCEEEESEEEEEEE
T ss_pred CeEEEECCcHHHHHHHHHHHHc--CCeEEEEecccccc------cC-----CHHHHHHHHHHHHHCCCEEEeCCeEEEEE
Confidence 3699999999999999999998 88999998753221 11 12233444455655 9999765 545443
Q ss_pred Cc------ccEEEe--ccC-c--EEEecEEEEecCCCCCCCC
Q psy1545 81 PR------VNCVIT--EKQ-N--RIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~------~~~v~~--~~g-~--~i~~d~lviAtG~~p~~~~ 111 (454)
.. ...+.+ .++ + .+.+|.+++|+|.+|....
T Consensus 278 ~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~ 319 (519)
T 3qfa_A 278 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRK 319 (519)
T ss_dssp EEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSS
T ss_pred EccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCC
Confidence 21 122322 344 2 5789999999999887653
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00027 Score=72.35 Aligned_cols=137 Identities=15% Similarity=0.115 Sum_probs=75.1
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhh--------hc----
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFK--------RM---- 200 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~--------~~---- 200 (454)
..+|+|||||+.|+-+|..|+ |.+|+++++.+..... ....+.......+.... -....... ..
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~-~G~~l~p~~~~~l~~lG-l~~~l~~~~~~~~~~~~~~~~~ 100 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYR-VGESLLPGTMSILNRLG-LQEKIDAQNYVKKPSATFLWGQ 100 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCC-CCCBCCHHHHHHHHHTT-CHHHHHHHCCEEECEEEEECSS
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCc-eeeeECHHHHHHHHHcC-CcHHHHhcCCcccCCcEEEecC
Confidence 478999999999999999987 9999999987532211 11111111111111100 00000000 00
Q ss_pred -----ccccCCCCCCCCC-C-c--cccc-c--ccccCccCCceEEEeCceEEEEEcCCCCccceEEEec-CC--cEEecC
Q psy1545 201 -----RYNTGGEKGPSLG-P-D--WHTQ-V--NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT-NG--HTHACD 265 (454)
Q Consensus 201 -----~~~~~~~~~~~l~-~-~--~~~~-~--~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~-~g--~~~~~D 265 (454)
.+.+......... + . +... + .+.+.+++.|++++.++.|+++..++ +..+.|.+. +| .++.+|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~--g~~~~V~~~~~G~~~~i~Ad 178 (591)
T 3i3l_A 101 DQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSD--PDRVVLTVRRGGESVTVESD 178 (591)
T ss_dssp SCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCS--TTCEEEEEEETTEEEEEEES
T ss_pred CCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CCEEEEEEecCCceEEEEcC
Confidence 0000010000000 0 0 1110 0 12334456899999999999998753 235677776 66 579999
Q ss_pred EEEEeeccCc
Q psy1545 266 IVVSAIGVVP 275 (454)
Q Consensus 266 ~vi~a~G~~p 275 (454)
+||.|+|...
T Consensus 179 lVV~AdG~~S 188 (591)
T 3i3l_A 179 FVIDAGGSGG 188 (591)
T ss_dssp EEEECCGGGC
T ss_pred EEEECCCCcc
Confidence 9999999876
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00044 Score=68.49 Aligned_cols=139 Identities=13% Similarity=0.084 Sum_probs=73.9
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc--ccCCcchhhhHHHhhccCCCChhhhh---hhcccccCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT--FLDPGAAEFFQDSINKTNTAKPETIF---KRMRYNTGGEK 208 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~--~~d~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~ 208 (454)
.+|+|||||+.|+.+|..|+ |.+|+++++.+..... .....+.....+.+.... ....... ....+.....
T Consensus 7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~-~~~~~~~~~~~~~~~~~~~~- 84 (453)
T 3atr_A 7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPY-PKGEELENKINGIKLYSPDM- 84 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCC-CCGGGEEEEEEEEEEECTTS-
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCC-CchHHHHhhhcceEEECCCC-
Confidence 47999999999999999997 9999999987653211 011111111222221000 0000000 0000000000
Q ss_pred CCCCC-Cc----ccc-cc--ccccCccCCceEEEeCceEEEEEcCCCCccceEEEec---CCc--EEecCEEEEeeccCc
Q psy1545 209 GPSLG-PD----WHT-QV--NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---NGH--THACDIVVSAIGVVP 275 (454)
Q Consensus 209 ~~~l~-~~----~~~-~~--~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g~--~~~~D~vi~a~G~~p 275 (454)
...+. +. +.+ .+ .+.+.+++.|++++.++.|+++..+++ ....|.+. +|+ ++.+|.||.|+|..+
T Consensus 85 ~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~--~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s 162 (453)
T 3atr_A 85 QTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDG--YVKGAVLFNRRTNEELTVYSKVVVEATGYSR 162 (453)
T ss_dssp SCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETT--EEEEEEEEETTTTEEEEEECSEEEECCGGGC
T ss_pred ceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECC--EEEEEEEEEcCCCceEEEEcCEEEECcCCch
Confidence 00000 00 000 00 022333457999999999999986542 22224443 665 799999999999987
Q ss_pred Ccc
Q psy1545 276 NSN 278 (454)
Q Consensus 276 ~~~ 278 (454)
...
T Consensus 163 ~vr 165 (453)
T 3atr_A 163 SFR 165 (453)
T ss_dssp TTG
T ss_pred hhH
Confidence 643
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=97.50 E-value=7.4e-05 Score=74.98 Aligned_cols=49 Identities=22% Similarity=0.359 Sum_probs=39.7
Q ss_pred cCccCCc-eEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 224 GSSRDTK-ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 224 ~~l~~~g-v~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
+.+++.| +++++++.|++|+..++ .+.|.+++|+++.+|.||+|+|...
T Consensus 263 ~~l~~~g~~~i~~~~~V~~i~~~~~---~v~v~~~~g~~~~ad~vI~a~~~~~ 312 (495)
T 2vvm_A 263 EEAAGTGRLGYVFGCPVRSVVNERD---AARVTARDGREFVAKRVVCTIPLNV 312 (495)
T ss_dssp HHHHTTTCEEEESSCCEEEEEECSS---SEEEEETTCCEEEEEEEEECCCGGG
T ss_pred HHhhhcCceEEEeCCEEEEEEEcCC---EEEEEECCCCEEEcCEEEECCCHHH
Confidence 3345577 99999999999987553 4778888888899999999999743
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=97.50 E-value=7.8e-05 Score=74.98 Aligned_cols=39 Identities=18% Similarity=0.339 Sum_probs=35.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
++||+|||||++|++||..|++. |.+|+|+|+++..++.
T Consensus 13 ~~~v~iiG~G~~Gl~aA~~l~~~--g~~v~v~E~~~~~GG~ 51 (504)
T 1sez_A 13 AKRVAVIGAGVSGLAAAYKLKIH--GLNVTVFEAEGKAGGK 51 (504)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT--SCEEEEECSSSSSCSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--CCcEEEEEeCCCCCCc
Confidence 37999999999999999999998 8999999999887654
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0024 Score=63.08 Aligned_cols=52 Identities=15% Similarity=0.434 Sum_probs=41.5
Q ss_pred CceeeeeccchHHHHHHHhh----cCCeEEEEcCchhHHHHHHHhc-CCcEEEEEeC
Q psy1545 114 PHVITIRDTDSVAVLQEKLK----SAKKIVVIGNGGIATELVHELS-NVDIVWVVKD 165 (454)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~~~----~~~~vvVvG~G~~g~e~a~~l~-g~~V~~i~~~ 165 (454)
+.++-+.+.++..++.+.+. +.++++|+|||.+|..+|..|. ..+|++++++
T Consensus 210 D~v~~i~~~~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d 266 (461)
T 4g65_A 210 DEVFFVAASNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQTYSVKLIERN 266 (461)
T ss_dssp CEEEEEEETTTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTTTSEEEEEESC
T ss_pred CEEEEEeccchHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhhcCceEEEecC
Confidence 45666677777777776653 3579999999999999999987 8889999763
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00032 Score=70.43 Aligned_cols=138 Identities=16% Similarity=0.110 Sum_probs=76.8
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc----ccCCcchhhhHHH-hhccCCCC-hhh-hh-hhccccc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT----FLDPGAAEFFQDS-INKTNTAK-PET-IF-KRMRYNT 204 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~----~~d~~~~~~~~~~-l~~~~~~~-~~~-~~-~~~~~~~ 204 (454)
..+|+|||+|+.|+-+|..|+ |.+|+++++.+..... .+.+...+.+... +.+..... ... .. ....+..
T Consensus 12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 91 (499)
T 2qa2_A 12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVDF 91 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEEG
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceeccc
Confidence 568999999999999999997 9999999987654321 1112111222111 00000000 000 00 0000000
Q ss_pred CCCCCCCCCC-ccccccc----cccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCc---EEecCEEEEeeccCcC
Q psy1545 205 GGEKGPSLGP-DWHTQVN----LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGH---THACDIVVSAIGVVPN 276 (454)
Q Consensus 205 ~~~~~~~l~~-~~~~~~~----~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~---~~~~D~vi~a~G~~p~ 276 (454)
. ........ -...+.. +.+.+++.|+++++++++++++.+++ .+.+.+.++. ++.+|+||.|.|....
T Consensus 92 ~-~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~---~v~v~~~~~~g~~~~~a~~vVgADG~~S~ 167 (499)
T 2qa2_A 92 G-VLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGD---HVVVEVEGPDGPRSLTTRYVVGCDGGRST 167 (499)
T ss_dssp G-GSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSS---CEEEEEECSSCEEEEEEEEEEECCCTTCH
T ss_pred c-cCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCC---EEEEEEEcCCCcEEEEeCEEEEccCcccH
Confidence 0 00000000 0001111 23334557999999999999987653 4667777764 7999999999999764
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00033 Score=71.64 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=37.6
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEec--CCc--EEecCEEEEeeccCc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT--NGH--THACDIVVSAIGVVP 275 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~--~g~--~~~~D~vi~a~G~~p 275 (454)
.+.+++.||++++++.|+++..+++ +....+... +|+ ++.+|.||+|+|...
T Consensus 262 ~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~ 317 (571)
T 1y0p_A 262 YDNAVKRNIDLRMNTRGIEVLKDDK-GTVKGILVKGMYKGYYWVKADAVILATGGFA 317 (571)
T ss_dssp HHHHHHTTCEEESSEEEEEEEECTT-SCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred HHHHHhcCCEEEeCCEeeEeEEcCC-CeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence 3445668999999999999986542 223334443 664 689999999998754
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=9.1e-05 Score=74.12 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=35.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCC-CeEEEECCCCccccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPG-ESIGLVTPSGIVKAVTK 44 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g-~~v~lie~~~~~~~~~~ 44 (454)
++|++|||||++|+++|+.|++. | .+|+|+|+++..++...
T Consensus 9 ~~~v~iiG~G~~Gl~~A~~l~~~--g~~~v~v~E~~~~~GG~~~ 50 (484)
T 4dsg_A 9 TPKIVIIGAGPTGLGAAVRLTEL--GYKNWHLYECNDTPGGLSR 50 (484)
T ss_dssp SCCEEEECCSHHHHHHHHHHHHT--TCCSEEEEESSSSSSGGGC
T ss_pred CCCEEEECcCHHHHHHHHHHHHc--CCCCEEEEeCCCCCCCeee
Confidence 47999999999999999999998 6 79999999987765443
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00011 Score=75.14 Aligned_cols=39 Identities=33% Similarity=0.520 Sum_probs=34.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
++||+|||||++|+++|+.|+++ |.+|+|+|+++...+.
T Consensus 32 ~~DVvVIGgGi~G~~~A~~La~r--G~~V~LlE~~~~~~Gt 70 (571)
T 2rgh_A 32 ELDLLIIGGGITGAGVAVQAAAS--GIKTGLIEMQDFAEGT 70 (571)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSTTCSG
T ss_pred CCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCCCCc
Confidence 47999999999999999999998 8999999998765443
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=97.46 E-value=5.9e-05 Score=74.77 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=30.7
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
.++++|||+|+.|+.+|..|+ |.+|+++++.+.+
T Consensus 122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~ 157 (456)
T 2vdc_G 122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRM 157 (456)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 578999999999999999986 9999999987754
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00033 Score=71.38 Aligned_cols=140 Identities=15% Similarity=0.170 Sum_probs=74.6
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc-ccCCcc----hhhhHHHhhccCCCChhhhhhh--cccccC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT-FLDPGA----AEFFQDSINKTNTAKPETIFKR--MRYNTG 205 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~-~~d~~~----~~~~~~~l~~~~~~~~~~~~~~--~~~~~~ 205 (454)
.-.|+|||||..|+++|..++ |.+|.+++++...+.. ...+.. ...+.+.+..... ........ ..+...
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg-~~~~~~d~~gi~f~~l 105 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGG-EMGKAIDQTGIQFKML 105 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTC-SHHHHHHHHEEEEEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhh-HHHHHhhhcccceeec
Confidence 357999999999999999886 9999999987421110 011111 0112222211000 00000000 111100
Q ss_pred C-CCCCCCCC---ccccc---cccccCccC-CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 206 G-EKGPSLGP---DWHTQ---VNLHGSSRD-TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 206 ~-~~~~~l~~---~~~~~---~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
. ..++.... ..... ..+.+.+++ .|++++ ++.|+++..++ +....|.+.+|.++.+|.||+|+|..++.
T Consensus 106 ~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~--g~V~GV~t~dG~~i~AdaVVLATG~~s~~ 182 (637)
T 2zxi_A 106 NTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKN--NQVVGVRTNLGVEYKTKAVVVTTGTFLNG 182 (637)
T ss_dssp STTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESS--SBEEEEEETTSCEEECSEEEECCTTCBTC
T ss_pred ccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecC--CEEEEEEECCCcEEEeCEEEEccCCCccC
Confidence 0 00111100 00000 012334455 599995 56899987654 23456888899899999999999987665
Q ss_pred c
Q psy1545 278 N 278 (454)
Q Consensus 278 ~ 278 (454)
.
T Consensus 183 ~ 183 (637)
T 2zxi_A 183 V 183 (637)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00043 Score=71.18 Aligned_cols=95 Identities=18% Similarity=0.235 Sum_probs=63.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||..|+-+|..|++. +.+|+++++..... .+ +.+......+.+.+ +|+++.+ .+..+.
T Consensus 287 ~~vvViGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~l~------~~-----d~~~~~~~~~~l~~~gv~i~~~~~v~~v~ 353 (598)
T 2x8g_A 287 GKTLVIGASYVALECAGFLASL--GGDVTVMVRSILLR------GF-----DQQMAEKVGDYMENHGVKFAKLCVPDEIK 353 (598)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCSST------TS-----CHHHHHHHHHHHHHTTCEEEETEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCEEEEEECCcCcC------cC-----CHHHHHHHHHHHHhCCCEEEECCeEEEEE
Confidence 3699999999999999999998 88999999862211 11 11222333445555 9999755 555552
Q ss_pred --------C---cccEEE--eccCcEEE--ecEEEEecCCCCCCC
Q psy1545 81 --------P---RVNCVI--TEKQNRIK--YKTLCICTGASPRKI 110 (454)
Q Consensus 81 --------~---~~~~v~--~~~g~~i~--~d~lviAtG~~p~~~ 110 (454)
. ....+. ..+|+++. +|.+++|+|.+|...
T Consensus 354 ~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~ 398 (598)
T 2x8g_A 354 QLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLS 398 (598)
T ss_dssp EEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGG
T ss_pred eccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccC
Confidence 1 111232 24666555 999999999987653
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00012 Score=69.70 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
+||+|||||+||+.||..|++. |.+|+|+|+.+
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~--G~~V~liE~~~ 34 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRL--GVPVRLFEMRP 34 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCEEEECCTT
T ss_pred CCEEEECchHHHHHHHHHHHHC--CCcEEEEeccC
Confidence 6999999999999999999998 99999999876
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00038 Score=69.85 Aligned_cols=137 Identities=15% Similarity=0.101 Sum_probs=75.9
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhh---hhh-c-----ccc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETI---FKR-M-----RYN 203 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~---~~~-~-----~~~ 203 (454)
..+|+|||+|+.|+-+|..|+ |.+|+++++.+......-...+.....+.+.+.... .... ... . .+.
T Consensus 11 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~-~~~~~~~~~~~~~~~~~~~~ 89 (500)
T 2qa1_A 11 DAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGIL-PRFGEVETSTQGHFGGLPID 89 (500)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCG-GGGCSCCBCCEEEETTEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCH-HHHHhccccccccccceecc
Confidence 457999999999999999997 999999998765432100011111112222210000 0000 000 0 000
Q ss_pred cCCCCCCCCCC-ccccccc----cccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCc---EEecCEEEEeeccCc
Q psy1545 204 TGGEKGPSLGP-DWHTQVN----LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGH---THACDIVVSAIGVVP 275 (454)
Q Consensus 204 ~~~~~~~~l~~-~~~~~~~----~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~---~~~~D~vi~a~G~~p 275 (454)
.. ........ -...+.. +.+.+++.|+++++++++++++.+++ .+++.++++. ++.+|+||.|.|...
T Consensus 90 ~~-~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~---~v~v~~~~~~g~~~~~a~~vVgADG~~S 165 (500)
T 2qa1_A 90 FG-VLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGA---GVTVEVRGPEGKHTLRAAYLVGCDGGRS 165 (500)
T ss_dssp GG-GSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETT---EEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred cc-cCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCC---eEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence 00 00000000 0000111 23334557999999999999987653 4667777764 799999999999976
Q ss_pred C
Q psy1545 276 N 276 (454)
Q Consensus 276 ~ 276 (454)
.
T Consensus 166 ~ 166 (500)
T 2qa1_A 166 S 166 (500)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00051 Score=65.94 Aligned_cols=49 Identities=12% Similarity=0.274 Sum_probs=39.0
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
+.+++.|++++.+++|++++.+++ .+.+.+++| ++.+|.||+|+|....
T Consensus 157 ~~~~~~G~~i~~~~~V~~i~~~~~---~~~v~~~~g-~~~a~~vV~a~G~~s~ 205 (372)
T 2uzz_A 157 QLAKEAGCAQLFNCPVTAIRHDDD---GVTIETADG-EYQAKKAIVCAGTWVK 205 (372)
T ss_dssp HHHHHTTCEEECSCCEEEEEECSS---SEEEEESSC-EEEEEEEEECCGGGGG
T ss_pred HHHHHCCCEEEcCCEEEEEEEcCC---EEEEEECCC-eEEcCEEEEcCCccHH
Confidence 444668999999999999987653 366777777 4999999999998643
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00057 Score=69.88 Aligned_cols=138 Identities=12% Similarity=0.187 Sum_probs=73.6
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc-ccCCcch----hhhHHHhhccCCCChhhhhhh--cccccCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT-FLDPGAA----EFFQDSINKTNTAKPETIFKR--MRYNTGG 206 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~-~~d~~~~----~~~~~~l~~~~~~~~~~~~~~--~~~~~~~ 206 (454)
-.|+|||||..|+++|..++ |.+|.++++....... ...+... ..+.+.+..... ........ ..+....
T Consensus 29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg-~~~~~~d~~gi~f~~l~ 107 (651)
T 3ces_A 29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGG-LMAKAIDQAGIQFRILN 107 (651)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTC-SHHHHHHHHEEEEEEES
T ss_pred CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhcc-HHHHHhhhcccchhhhh
Confidence 47999999999999999886 9999999986421110 0111110 111222211000 00000000 1111000
Q ss_pred -CCCCCCCC---cccc---ccccccCccC-CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 207 -EKGPSLGP---DWHT---QVNLHGSSRD-TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 207 -~~~~~l~~---~~~~---~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
..++.... .... ...+.+.+++ .|++++ ++.|+.+..++ +....|.+.+|.++.+|.||+|+|..+..
T Consensus 108 ~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~--g~V~GV~t~dG~~I~Ad~VVLATGt~s~~ 183 (651)
T 3ces_A 108 ASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVEN--DRVVGAVTQMGLKFRAKAVVLTVGTFLDG 183 (651)
T ss_dssp TTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESS--SBEEEEEETTSEEEEEEEEEECCSTTTCC
T ss_pred cccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecC--CEEEEEEECCCCEEECCEEEEcCCCCccC
Confidence 00111000 0000 0012334455 699995 56899987654 23457888888889999999999997654
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00063 Score=66.03 Aligned_cols=50 Identities=22% Similarity=0.169 Sum_probs=39.8
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
.+.+++.|++++.++.|+++..++ +..+.+.+++| ++.+|.||+|+|...
T Consensus 181 ~~~~~~~g~~i~~~~~v~~i~~~~--~~~~~v~~~~g-~~~a~~vV~a~G~~s 230 (405)
T 2gag_B 181 ARKANEMGVDIIQNCEVTGFIKDG--EKVTGVKTTRG-TIHAGKVALAGAGHS 230 (405)
T ss_dssp HHHHHHTTCEEECSCCEEEEEESS--SBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred HHHHHHCCCEEEcCCeEEEEEEeC--CEEEEEEeCCc-eEECCEEEECCchhH
Confidence 344566899999999999998764 23456777777 799999999999865
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0001 Score=75.46 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=33.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||||||||+||++||..|++. |.+|+|+|+.+..
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~~--G~~V~vlEK~~~~ 42 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQS--GQTCALLSKVFPT 42 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCGG
T ss_pred cCCEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCC
Confidence 47999999999999999999998 8999999998654
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00016 Score=71.33 Aligned_cols=39 Identities=10% Similarity=0.197 Sum_probs=35.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
++|++|||+|++|+++|..|++. |.+|+++|+++..++.
T Consensus 6 ~~~v~iiG~G~~gl~~a~~l~~~--g~~v~~~e~~~~~gg~ 44 (433)
T 1d5t_A 6 EYDVIVLGTGLTECILSGIMSVN--GKKVLHMDRNPYYGGE 44 (433)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCTT
T ss_pred cCCEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCcccc
Confidence 47999999999999999999998 8999999999877654
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0004 Score=70.00 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=38.9
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEecCCc--EEecCEEEEeeccCcCc
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGH--THACDIVVSAIGVVPNS 277 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~--~~~~D~vi~a~G~~p~~ 277 (454)
+.+++.|++++.+++|+++..+++....+.+...+|+ ++.+|+||.|+|.....
T Consensus 119 ~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S~v 174 (512)
T 3e1t_A 119 RNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTRV 174 (512)
T ss_dssp HHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTCSS
T ss_pred HHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcchHH
Confidence 3445589999999999999875521012344555674 79999999999997643
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00052 Score=66.15 Aligned_cols=49 Identities=18% Similarity=0.155 Sum_probs=38.9
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceE-EEecCCcEEecCEEEEeeccCc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAY-VKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~-v~~~~g~~~~~D~vi~a~G~~p 275 (454)
.+.+++.|++++.++.|++++.+++ .+. |.+++| ++.+|.||+|+|...
T Consensus 156 ~~~~~~~Gv~i~~~~~v~~i~~~~~---~v~gv~~~~g-~i~a~~VV~A~G~~s 205 (382)
T 1y56_B 156 AVKAKEYGAKLLEYTEVKGFLIENN---EIKGVKTNKG-IIKTGIVVNATNAWA 205 (382)
T ss_dssp HHHHHHTTCEEECSCCEEEEEESSS---BEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHHCCCEEECCceEEEEEEECC---EEEEEEECCc-EEECCEEEECcchhH
Confidence 3444668999999999999987653 344 777777 799999999999865
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00016 Score=74.92 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=33.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||||||||.||++||+.|++. |.+|+|||+.+..
T Consensus 5 ~~DVvVIGgG~AGL~AAl~aae~--G~~V~vlEK~~~~ 40 (660)
T 2bs2_A 5 YCDSLVIGGGLAGLRAAVATQQK--GLSTIVLSLIPVK 40 (660)
T ss_dssp ECSEEEECCSHHHHHHHHHHHTT--TCCEEEECSSCGG
T ss_pred cccEEEECchHHHHHHHHHHHHC--CCcEEEEeccCCC
Confidence 47999999999999999999998 8999999998653
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00084 Score=68.57 Aligned_cols=139 Identities=14% Similarity=0.233 Sum_probs=73.2
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc-cCCcch----hhhHHHhhccCCCChhhhhhh--cccccC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF-LDPGAA----EFFQDSINKTNTAKPETIFKR--MRYNTG 205 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~-~d~~~~----~~~~~~l~~~~~~~~~~~~~~--~~~~~~ 205 (454)
.-.|+|||||..|+++|..++ |.+|.++++........ ..+... ..+.+.+..... ........ ..+...
T Consensus 21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g-~~~~~~d~~gi~f~~l 99 (641)
T 3cp8_A 21 MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGG-EMGKAIDATGIQFRML 99 (641)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTC-SHHHHHHHHEEEEEEE
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhccc-HHHHHHHhcCCchhhc
Confidence 458999999999999999986 99999999874211110 111111 111222211000 00000000 111100
Q ss_pred C-CCCCCCC-C--cccc---ccccccCccC-CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 206 G-EKGPSLG-P--DWHT---QVNLHGSSRD-TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 206 ~-~~~~~l~-~--~~~~---~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
. ..++... + ...+ ...+.+.+++ .|++++.+ .|..+..+++ ....|.+.+|.++.+|.||+|+|..++.
T Consensus 100 ~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~d~g--~V~GV~t~~G~~i~Ad~VVLATG~~s~~ 176 (641)
T 3cp8_A 100 NRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSANSG--KFSSVTVRSGRAIQAKAAILACGTFLNG 176 (641)
T ss_dssp CSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEETT--EEEEEEETTSCEEEEEEEEECCTTCBTC
T ss_pred ccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEecCC--EEEEEEECCCcEEEeCEEEECcCCCCCc
Confidence 0 0011110 0 0000 0012333444 49999654 8888775442 2344788888899999999999988654
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00017 Score=71.28 Aligned_cols=51 Identities=20% Similarity=0.141 Sum_probs=39.9
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccC
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVV 274 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~ 274 (454)
.+.+++.|+++++++.|++|..+++ ++...|++.+|++++||.||.++++.
T Consensus 263 ~r~~~~~Gg~i~l~t~V~~I~~d~~-g~v~gV~~~~G~~i~Ad~VI~a~~~~ 313 (475)
T 3p1w_A 263 SRMCAINGGTFMLNKNVVDFVFDDD-NKVCGIKSSDGEIAYCDKVICDPSYV 313 (475)
T ss_dssp HHHHHHC--CEESSCCEEEEEECTT-SCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred HHHHHHcCCEEEeCCeEEEEEEecC-CeEEEEEECCCcEEECCEEEECCCcc
Confidence 3445678999999999999986222 34577889999899999999999998
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00045 Score=67.41 Aligned_cols=137 Identities=16% Similarity=0.235 Sum_probs=73.4
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCc-EEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhh-----hhcccccCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVD-IVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIF-----KRMRYNTGG 206 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~-V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~ 206 (454)
..+|+|||||+.|+.+|..|+ |.+ |+++++.+.+.+....-.+.....+.+.+.. -...... ....+..
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg-~~~~l~~~~~~~~~~~~~~-- 80 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELG-LGPALAATAIPTHELRYID-- 80 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTT-CHHHHHHHSEEECEEEEEC--
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCC-ChHHHHhhCCCcceEEEEc--
Confidence 468999999999999999996 999 9999998754321000001111111111100 0000000 0001100
Q ss_pred CCCCC-----------CC-Ccc-ccc--c--ccccCccC-Cc-eEEEeCceEEEEEcCCCCccceEEEecC---C--cEE
Q psy1545 207 EKGPS-----------LG-PDW-HTQ--V--NLHGSSRD-TK-ITIEYSCEVERIVDSEDDTCNAYVKLTN---G--HTH 262 (454)
Q Consensus 207 ~~~~~-----------l~-~~~-~~~--~--~~~~~l~~-~g-v~i~~~~~v~~i~~~~~~~~~~~v~~~~---g--~~~ 262 (454)
..+.. .. +.+ ..+ + .+.+.+++ .| ++++++++|++++. ++ .+.+.+.+ | .++
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~---~v~v~~~~~~~g~~~~~ 156 (410)
T 3c96_A 81 QSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RD---GRVLIGARDGHGKPQAL 156 (410)
T ss_dssp TTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ET---TEEEEEEEETTSCEEEE
T ss_pred CCCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CC---ccEEEEecCCCCCceEE
Confidence 00000 00 000 000 0 12233333 25 68999999999987 43 35677665 7 579
Q ss_pred ecCEEEEeeccCcCcc
Q psy1545 263 ACDIVVSAIGVVPNSN 278 (454)
Q Consensus 263 ~~D~vi~a~G~~p~~~ 278 (454)
.+|+||.|.|......
T Consensus 157 ~ad~vV~AdG~~S~vR 172 (410)
T 3c96_A 157 GADVLVGADGIHSAVR 172 (410)
T ss_dssp EESEEEECCCTTCHHH
T ss_pred ecCEEEECCCccchhH
Confidence 9999999999987543
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00016 Score=71.74 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=30.5
Q ss_pred CCeEEEEcCchhHHHHHHHhc--C--CcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--N--VDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g--~~V~~i~~~~~~ 168 (454)
+++++|||+|+.|+.+|..|. + .+|+++++.+.+
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~ 43 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP 43 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcC
Confidence 689999999999999999886 6 899999987754
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00017 Score=72.35 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=35.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
.+||+|||||++|++||..|++. |.+|+|+|+++..++.
T Consensus 33 ~~~v~IiGaG~~Gl~aA~~l~~~--g~~v~vlE~~~~~gg~ 71 (498)
T 2iid_A 33 PKHVVIVGAGMAGLSAAYVLAGA--GHQVTVLEASERPGGR 71 (498)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHH--TCEEEEECSSSSSBTT
T ss_pred CCCEEEECCCHHHHHHHHHHHhC--CCeEEEEECCCCCCCc
Confidence 36899999999999999999998 8999999999877653
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00024 Score=68.38 Aligned_cols=48 Identities=17% Similarity=0.132 Sum_probs=39.2
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
+.+++.|+++++++.|+++..+++ .+.|++++| ++.+|.||+|+|...
T Consensus 162 ~~a~~~Gv~i~~~~~V~~i~~~~~---~~~V~t~~g-~i~a~~VV~A~G~~s 209 (381)
T 3nyc_A 162 RGIRRNQGQVLCNHEALEIRRVDG---AWEVRCDAG-SYRAAVLVNAAGAWC 209 (381)
T ss_dssp HHHHHTTCEEESSCCCCEEEEETT---EEEEECSSE-EEEESEEEECCGGGH
T ss_pred HHHHHCCCEEEcCCEEEEEEEeCC---eEEEEeCCC-EEEcCEEEECCChhH
Confidence 444668999999999999987653 467887777 799999999999854
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00021 Score=74.10 Aligned_cols=35 Identities=34% Similarity=0.472 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHh---h-cCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLA---F-LHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~---~-~~~g~~v~lie~~~~ 38 (454)
++||||||||+||++||..|+ + . |.+|+|||+.+.
T Consensus 22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~--G~~V~vlEK~~~ 60 (643)
T 1jnr_A 22 ETDILIIGGGFSGCGAAYEAAYWAKLG--GLKVTLVEKAAV 60 (643)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTT--TCCEEEECSSCT
T ss_pred cCCEEEECcCHHHHHHHHHHhhhhhhC--CCeEEEEeCcCC
Confidence 479999999999999999999 5 6 889999999864
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00029 Score=72.95 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=32.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhc----CCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFL----HPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~----~~g~~v~lie~~~~ 38 (454)
++||||||||+||++||+.|++. +||.+|+|||+...
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~ 62 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASL 62 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCT
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCC
Confidence 37999999999999999999986 24789999999754
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00031 Score=71.16 Aligned_cols=36 Identities=28% Similarity=0.359 Sum_probs=32.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
++||||||||+||++||..|++ |.+|+|+|+.+..+
T Consensus 8 ~~DVvVVG~G~AGl~aAl~la~---G~~V~vlEk~~~~~ 43 (540)
T 1chu_A 8 SCDVLIIGSGAAGLSLALRLAD---QHQVIVLSKGPVTE 43 (540)
T ss_dssp ECSEEEECCSHHHHHHHHHHTT---TSCEEEECSSCTTC
T ss_pred CCCEEEECccHHHHHHHHHHhc---CCcEEEEECCCCCC
Confidence 3799999999999999999998 67999999987643
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0014 Score=68.23 Aligned_cols=95 Identities=20% Similarity=0.195 Sum_probs=60.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEE-------------------------------------EECCCCcccccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIG-------------------------------------LVTPSGIVKAVTKT 45 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~-------------------------------------lie~~~~~~~~~~~ 45 (454)
.+|+|||||..|+-+|..|++. +.+++ ++++.+..
T Consensus 495 ~~VvVIGgG~~g~E~A~~l~~~--G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~------ 566 (671)
T 1ps9_A 495 NKVAIIGCGGIGFDTAMYLSQP--GESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASK------ 566 (671)
T ss_dssp SEEEEECCHHHHHHHHHHHTCC--SSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSC------
T ss_pred CeEEEECCChhHHHHHHHHHhc--CCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchh------
Confidence 4799999999999999999987 54433 22221100
Q ss_pred ccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEeCcccEEEeccC--cEEEecEEEEecCCCCCC
Q psy1545 46 VPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAIDPRVNCVITEKQ--NRIKYKTLCICTGASPRK 109 (454)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~~~~~~v~~~~g--~~i~~d~lviAtG~~p~~ 109 (454)
++..+. ........+.+.+ +|+++.+ ++..++.+...+. .+| +++.+|.+|+|+|.+|..
T Consensus 567 --l~~~l~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~v~~~-~~G~~~~i~~D~Vi~a~G~~p~~ 630 (671)
T 1ps9_A 567 --PGQGLG-KTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVV-INGETQVLAVDNVVICAGQEPNR 630 (671)
T ss_dssp --TTTTSC-TTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEE-ETTEEEEECCSEEEECCCEEECC
T ss_pred --hccccc-cccHHHHHHHHHhcCCEEEeCcEEEEEeCCeEEEe-cCCeEEEEeCCEEEECCCccccH
Confidence 001110 0111122344555 9999865 8888886543333 466 579999999999988753
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00097 Score=70.14 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=65.8
Q ss_pred ccEEEEC--CCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEE
Q psy1545 3 FTYLIIG--GGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAA 78 (454)
Q Consensus 3 ~dvvIIG--gG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~ 78 (454)
.+|+||| ||..|+-+|..|++. +.+|+++++.+ +.. ...+.. . .....+.+.+ +|+++.+ ++..
T Consensus 529 k~VvVIG~GgG~~g~e~A~~l~~~--G~~Vtlv~~~~-l~~---~~~~~~-----~-~~~~~~~l~~~GV~i~~~~~v~~ 596 (729)
T 1o94_A 529 KRVVILNADTYFMAPSLAEKLATA--GHEVTIVSGVH-LAN---YMHFTL-----E-YPNMMRRLHELHVEELGDHFCSR 596 (729)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHT--TCEEEEEESSC-TTH---HHHHTT-----C-HHHHHHHHHHTTCEEECSEEEEE
T ss_pred CeEEEEcCCCCchHHHHHHHHHHc--CCEEEEEeccc-ccc---cccccc-----c-HHHHHHHHHhCCCEEEcCcEEEE
Confidence 4799999 999999999999998 88999999987 321 000000 0 1223344545 9999866 8888
Q ss_pred EeCcccEEEe--ccC-cE------------------EEecEEEEecCCCCCC
Q psy1545 79 IDPRVNCVIT--EKQ-NR------------------IKYKTLCICTGASPRK 109 (454)
Q Consensus 79 i~~~~~~v~~--~~g-~~------------------i~~d~lviAtG~~p~~ 109 (454)
++.+...+.. .++ +. +.+|.||+|+|.+|..
T Consensus 597 i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~ 648 (729)
T 1o94_A 597 IEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSEC 648 (729)
T ss_dssp EETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECC
T ss_pred EECCeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCCh
Confidence 8876544432 122 22 8999999999987753
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00038 Score=70.32 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
.||+||||||+||+.+|.+|++. ++.+|+|||+.+..
T Consensus 17 ~yD~IIVGsG~aG~v~A~rLse~-~~~~VLvLEaG~~~ 53 (526)
T 3t37_A 17 NCDIVIVGGGSAGSLLAARLSED-PDSRVLLIEAGEEP 53 (526)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSSBCC
T ss_pred CeeEEEECccHHHHHHHHHHHhC-CCCeEEEEcCCCCC
Confidence 48999999999999999999984 58899999998653
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0017 Score=66.36 Aligned_cols=53 Identities=19% Similarity=0.141 Sum_probs=37.3
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEec--CCc--EEecCEEEEeeccCcC
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT--NGH--THACDIVVSAIGVVPN 276 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~--~g~--~~~~D~vi~a~G~~p~ 276 (454)
.+.+++.||++++++.++++..+++ +....|... +|+ ++.+|.||+|+|..+.
T Consensus 262 ~~~~~~~gv~i~~~t~v~~l~~~~~-g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~ 318 (572)
T 1d4d_A 262 WDNAVKRGTDIRLNSRVVRILEDAS-GKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK 318 (572)
T ss_dssp HHHHHHTTCEEESSEEEEEEEEC---CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred HHHHHHcCCeEEecCEEEEEEECCC-CeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence 3445668999999999999975431 123345444 664 6899999999997654
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0005 Score=68.46 Aligned_cols=40 Identities=15% Similarity=0.335 Sum_probs=34.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCCcccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSGIVKAVT 43 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~~~~~~~ 43 (454)
++||+|||||++|+++|..|++. +. +|+|+|+++..++..
T Consensus 4 ~~~~~iiG~G~~g~~~a~~l~~~--g~~~v~~~e~~~~~gg~~ 44 (472)
T 1b37_A 4 GPRVIVVGAGMSGISAAKRLSEA--GITDLLILEATDHIGGRM 44 (472)
T ss_dssp -CCEEEECCBHHHHHHHHHHHHT--TCCCEEEECSSSSSBTTS
T ss_pred CCeEEEECCCHHHHHHHHHHHhc--CCCceEEEeCCCCCCCce
Confidence 47999999999999999999998 87 899999988766543
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00073 Score=73.27 Aligned_cols=86 Identities=15% Similarity=0.192 Sum_probs=65.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||+|+.|+.+|..|++. +.+|+|+++.+.+.. . .+.+.+ +|+++.+ .+..+.
T Consensus 285 k~vvViGgG~~g~E~A~~L~~~--G~~Vtvv~~~~~~~~------------~-------~~~l~~~GV~v~~~~~v~~i~ 343 (965)
T 2gag_A 285 ARIAVATTNDSAYELVRELAAT--GGVVAVIDARSSISA------------A-------AAQAVADGVQVISGSVVVDTE 343 (965)
T ss_dssp SSEEEEESSTTHHHHHHHHGGG--TCCSEEEESCSSCCH------------H-------HHHHHHTTCCEEETEEEEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHc--CCcEEEEECCCccch------------h-------HHHHHhCCeEEEeCCEeEEEe
Confidence 4799999999999999999998 888999999875420 0 234445 9999866 788887
Q ss_pred C--ccc--EEEecc-------C--cEEEecEEEEecCCCCCC
Q psy1545 81 P--RVN--CVITEK-------Q--NRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~--~~~--~v~~~~-------g--~~i~~d~lviAtG~~p~~ 109 (454)
. +.+ .|.+.+ | +++.+|.|++|+|.+|+.
T Consensus 344 ~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~ 385 (965)
T 2gag_A 344 ADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVV 385 (965)
T ss_dssp ECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECC
T ss_pred ccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcCh
Confidence 5 332 355443 4 579999999999988764
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.002 Score=64.82 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=37.0
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecC-C--cEEecC-EEEEeeccCc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN-G--HTHACD-IVVSAIGVVP 275 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~-g--~~~~~D-~vi~a~G~~p 275 (454)
.+.+++.||++++++.++++..+++ ++...|...+ + .++.+| .||+|+|-..
T Consensus 209 ~~~~~~~Gv~i~~~t~v~~L~~~~~-g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 209 VETAEKLGVRAEYDMRVQTLVTDDT-GRVVGIVAKQYGKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HHHHHHTTCEEECSEEEEEEEECTT-CCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred HHHHHHcCCEEEecCEeEEEEECCC-CcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence 3444667999999999999987632 3344455543 3 358996 9999998765
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00051 Score=72.42 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=36.3
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~ 273 (454)
.|++|++++.|++|+.+++ .+.|.+.+|+++.+|.||+|+..
T Consensus 542 ~gl~I~l~t~V~~I~~~~~---~v~V~~~~G~~i~Ad~VIvA~P~ 583 (776)
T 4gut_A 542 EGLDIQLKSPVQCIDYSGD---EVQVTTTDGTGYSAQKVLVTVPL 583 (776)
T ss_dssp TTSCEESSCCEEEEECSSS---SEEEEETTCCEEEESEEEECCCH
T ss_pred hCCcEEcCCeeEEEEEcCC---EEEEEECCCcEEEcCEEEECCCH
Confidence 4789999999999997663 47788899989999999999854
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0034 Score=64.18 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=39.0
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEec------CC---------cEEecCEEEEeeccCcCc
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT------NG---------HTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~------~g---------~~~~~D~vi~a~G~~p~~ 277 (454)
+.+++.||++++++.++++..+++ +....|.+. +| .++.+|+||.|.|.....
T Consensus 152 ~~a~~~Gv~i~~g~~v~~l~~~~~-g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~v 219 (584)
T 2gmh_A 152 EQAEALGVEVYPGYAAAEILFHED-GSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHL 219 (584)
T ss_dssp HHHHHTTCEEETTCCEEEEEECTT-SSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHH
T ss_pred HHHHHcCCEEEcCCEEEEEEEcCC-CCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCchH
Confidence 444567999999999999986543 223346665 33 689999999999998753
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00078 Score=67.49 Aligned_cols=103 Identities=14% Similarity=0.178 Sum_probs=67.5
Q ss_pred CCeEEEEcCchhHHHHHHHhc-CCcEEEEEeCCCccccccC--------CcchhhhHHHhhccCCCChhhhhhhcccccC
Q psy1545 135 AKKIVVIGNGGIATELVHELS-NVDIVWVVKDKHISATFLD--------PGAAEFFQDSINKTNTAKPETIFKRMRYNTG 205 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~-g~~V~~i~~~~~~~~~~~d--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 205 (454)
..+++|||+|+.|+.+|..|+ ..+|+++++.+.+-..... +.....+...
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~--------------------- 166 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQYLTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEE--------------------- 166 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTTCCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHH---------------------
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHH---------------------
Confidence 357999999999999999885 3899999987754221100 0000001111
Q ss_pred CCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEe-cCCc--EEecCEEEEeeccCcCcc
Q psy1545 206 GEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL-TNGH--THACDIVVSAIGVVPNSN 278 (454)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~-~~g~--~~~~D~vi~a~G~~p~~~ 278 (454)
+.+.+ +.+++++.++.+.++...+. .+.+.. ++++ ++++|.+++|+|..|...
T Consensus 167 ----------------l~~~l-~~~v~~~~~~~v~~i~~~~~---~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~ 222 (493)
T 1y56_A 167 ----------------LVGKL-NENTKIYLETSALGVFDKGE---YFLVPVVRGDKLIEILAKRVVLATGAIDSTM 222 (493)
T ss_dssp ----------------HHHTC-CTTEEEETTEEECCCEECSS---SEEEEEEETTEEEEEEESCEEECCCEEECCC
T ss_pred ----------------HHHHH-hcCCEEEcCCEEEEEEcCCc---EEEEEEecCCeEEEEECCEEEECCCCCccCC
Confidence 11222 47999999999888876552 233332 4553 689999999999988764
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00058 Score=67.62 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=28.9
Q ss_pred CCeEEEEcCchhHHHHHHHh---c------CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHEL---S------NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l---~------g~~V~~i~~~~~~ 168 (454)
+++++|||+|+.|+.+|..| . +.+|+++++.+.+
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~ 45 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP 45 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCC
Confidence 57899999999999999876 2 6899999987654
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00064 Score=70.70 Aligned_cols=37 Identities=24% Similarity=0.436 Sum_probs=34.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
+||+|||||++|+++|..|++. |++|+|+|+.+..++
T Consensus 108 ~~v~viG~G~~gl~~a~~l~~~--g~~v~~~e~~~~~gg 144 (662)
T 2z3y_A 108 GKVIIIGSGVSGLAAARQLQSF--GMDVTLLEARDRVGG 144 (662)
T ss_dssp CEEEEECCBHHHHHHHHHHHHT--TCEEEEECSSSSSBT
T ss_pred CeEEEECcCHHHHHHHHHHHHC--CCeEEEEecCCCCCC
Confidence 6899999999999999999998 899999999887665
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0021 Score=65.12 Aligned_cols=52 Identities=12% Similarity=0.071 Sum_probs=40.6
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
+.+++.|++++.+ +|+++..+++ +..+.|.+++|+++.+|.||.|+|.....
T Consensus 173 ~~a~~~gv~~~~~-~v~~i~~~~~-g~~~~v~~~~g~~i~ad~vV~A~G~~s~~ 224 (538)
T 2aqj_A 173 RWAVERGVNRVVD-EVVDVRLNNR-GYISNLLTKEGRTLEADLFIDCSGMRGLL 224 (538)
T ss_dssp HHHHHTTCEEEEC-CEEEEEECTT-SCEEEEEETTSCEECCSEEEECCGGGCCC
T ss_pred HHHHHCCCEEEEe-eEeEEEEcCC-CcEEEEEECCCcEEEeCEEEECCCCchhh
Confidence 3335579999999 8999986543 23457888888889999999999997654
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0003 Score=76.88 Aligned_cols=100 Identities=17% Similarity=0.173 Sum_probs=61.9
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CC-cEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NV-DIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPS 211 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~-~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (454)
+++++|||||+.|+.+|..|+ |. +|+++++.+.+-.. +...+.. + .
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~---------~~~~ip~--------------------~--~ 235 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGL---------STSEIPQ--------------------F--R 235 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTH---------HHHTSCT--------------------T--T
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcc---------ccccCCc--------------------c--c
Confidence 578999999999999999986 88 79999987654321 0000000 0 0
Q ss_pred CCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc-CcCc
Q psy1545 212 LGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV-VPNS 277 (454)
Q Consensus 212 l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~-~p~~ 277 (454)
+..+... ...+.+++.||++++++.+.. . .+.++++.++.+|.||+|||. +|..
T Consensus 236 ~~~~~~~--~~~~~~~~~gv~~~~~~~v~~----~------~v~~~~~~~~~~d~vvlAtGa~~p~~ 290 (1025)
T 1gte_A 236 LPYDVVN--FEIELMKDLGVKIICGKSLSE----N------EITLNTLKEEGYKAAFIGIGLPEPKT 290 (1025)
T ss_dssp SCHHHHH--HHHHHHHTTTCEEEESCCBST----T------SBCHHHHHHTTCCEEEECCCCCEECC
T ss_pred CCHHHHH--HHHHHHHHCCcEEEcccEecc----c------eEEhhhcCccCCCEEEEecCCCCCCC
Confidence 0000000 011223558999999977621 1 144455556789999999998 4764
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00062 Score=69.32 Aligned_cols=35 Identities=26% Similarity=0.528 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.||+||||||.||+.+|.+|.+. ++.+|+|||+.+
T Consensus 19 ~yDyIIVGgG~AG~vlA~RLse~-~~~~VLlLEaG~ 53 (583)
T 3qvp_A 19 TVDYIIAGGGLTGLTTAARLTEN-PNISVLVIESGS 53 (583)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTS-TTCCEEEECSSC
T ss_pred CccEEEECCcHHHHHHHHHHHhC-CCCcEEEEecCC
Confidence 48999999999999999999975 688999999987
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.005 Score=59.54 Aligned_cols=48 Identities=23% Similarity=0.201 Sum_probs=37.7
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
+.+++.|+++++++.|++++.+++ .+.+.+++| ++.+|.||+|+|...
T Consensus 161 ~~a~~~Gv~i~~~~~V~~i~~~~~---~v~v~t~~g-~i~a~~VV~A~G~~s 208 (397)
T 2oln_A 161 TLAQAAGATLRAGETVTELVPDAD---GVSVTTDRG-TYRAGKVVLACGPYT 208 (397)
T ss_dssp HHHHHTTCEEEESCCEEEEEEETT---EEEEEESSC-EEEEEEEEECCGGGH
T ss_pred HHHHHcCCEEECCCEEEEEEEcCC---eEEEEECCC-EEEcCEEEEcCCcCh
Confidence 444667999999999999987553 356666665 799999999999863
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00075 Score=71.72 Aligned_cols=38 Identities=24% Similarity=0.407 Sum_probs=34.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
++|+|||||++|++||..|++. |++|+|+|+.+..++.
T Consensus 279 ~~v~viG~G~aGl~~A~~l~~~--g~~v~v~E~~~~~GG~ 316 (852)
T 2xag_A 279 GKVIIIGSGVSGLAAARQLQSF--GMDVTLLEARDRVGGR 316 (852)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCcEEEEEecCcCCCc
Confidence 6899999999999999999998 8999999999877653
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00073 Score=68.62 Aligned_cols=36 Identities=25% Similarity=0.546 Sum_probs=33.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++|+||||+|++|+.+|.+|.+. +.+|+|+|+.+..
T Consensus 7 ~~D~iIvG~G~aG~~~A~~L~~~--g~~VlvlE~g~~~ 42 (546)
T 1kdg_A 7 PYDYIIVGAGPGGIIAADRLSEA--GKKVLLLERGGPS 42 (546)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCCC
T ss_pred ceeEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCCCC
Confidence 58999999999999999999997 8999999998753
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00099 Score=64.20 Aligned_cols=136 Identities=14% Similarity=0.157 Sum_probs=72.4
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccccc-CCcchhhhHHHhhccCCCChhhhhh---hcccccCCC---
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFL-DPGAAEFFQDSINKTNTAKPETIFK---RMRYNTGGE--- 207 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~-d~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~--- 207 (454)
.|+|||||+.|+-+|..|+ |.+|++++|.+.+-.... -..+.....+.+.- ..+...+.. ..++.....
T Consensus 6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~ 83 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADI--KADRSFIANEVKGARIYGPSEKRP 83 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTC--CCCTTTEEEEESEEEEECTTCSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCC--CchhhhhhcccceEEEEeCCCceE
Confidence 5899999999999999997 999999999776532111 11122222222211 000001000 111111000
Q ss_pred -------CCCCCCCccccc-c--ccccCccCCceEEEeCceEEEEEcCCCCccceEEEe-cCC--cEEecCEEEEeeccC
Q psy1545 208 -------KGPSLGPDWHTQ-V--NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL-TNG--HTHACDIVVSAIGVV 274 (454)
Q Consensus 208 -------~~~~l~~~~~~~-~--~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~-~~g--~~~~~D~vi~a~G~~ 274 (454)
.....+-.+.+. + .+.+...+.|++++.++.++.+..+++ ....+.. .++ .++.+|+||-|.|..
T Consensus 84 ~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~--~~~~v~~~~~~~~~~~~a~~vIgAdG~~ 161 (397)
T 3oz2_A 84 IILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENG--KVAGAKIRHNNEIVDVRAKMVIAADGFE 161 (397)
T ss_dssp EEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETT--EEEEEEEEETTEEEEEEEEEEEECCCTT
T ss_pred eeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccc--eeeeeeecccccceEEEEeEEEeCCccc
Confidence 000000000000 0 022334567999999999999876553 2333332 233 468999999999987
Q ss_pred cC
Q psy1545 275 PN 276 (454)
Q Consensus 275 p~ 276 (454)
..
T Consensus 162 S~ 163 (397)
T 3oz2_A 162 SE 163 (397)
T ss_dssp CH
T ss_pred cH
Confidence 54
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00079 Score=68.54 Aligned_cols=36 Identities=31% Similarity=0.471 Sum_probs=32.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.||+||||||.||+.+|.+|.+. +..+|+|||+.+.
T Consensus 6 ~yDyIVVGgG~AG~v~A~rLse~-~~~~VLllEaG~~ 41 (577)
T 3q9t_A 6 HFDFVIVGGGTAGNTVAGRLAEN-PNVTVLIVEAGIG 41 (577)
T ss_dssp EEEEEEESCSHHHHHHHHHHTTS-TTSCEEEECSSCS
T ss_pred cccEEEECCcHHHHHHHHHHHhC-CCCcEEEEecCCC
Confidence 48999999999999999999987 4579999999876
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0024 Score=64.16 Aligned_cols=52 Identities=12% Similarity=0.032 Sum_probs=40.8
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
+.+++.|++++.+ +|+++..+++ +..+.|.+++|+++.+|+||.|+|.....
T Consensus 181 ~~a~~~gv~~~~~-~v~~i~~~~~-~~~~~v~~~~g~~~~ad~vV~A~G~~S~~ 232 (511)
T 2weu_A 181 EYAIARGVRHVVD-DVQHVGQDER-GWISGVHTKQHGEISGDLFVDCTGFRGLL 232 (511)
T ss_dssp HHHHHTTCEEEEC-CEEEEEECTT-SCEEEEEESSSCEEECSEEEECCGGGCCC
T ss_pred HHHHHCCCEEEEC-eEeEEEEcCC-CCEEEEEECCCCEEEcCEEEECCCcchHH
Confidence 3335579999999 9999987443 33467888888889999999999997654
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0039 Score=66.60 Aligned_cols=50 Identities=26% Similarity=0.214 Sum_probs=39.1
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
.+.+++.|++++.++.|++++.+++ ....|.+++| ++.+|.||+|+|...
T Consensus 158 ~~~a~~~Gv~i~~~t~V~~i~~~~~--~v~~V~t~~G-~i~Ad~VV~AaG~~s 207 (830)
T 1pj5_A 158 IKRTESAGVTYRGSTTVTGIEQSGG--RVTGVQTADG-VIPADIVVSCAGFWG 207 (830)
T ss_dssp HHHHHHTTCEEECSCCEEEEEEETT--EEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHHcCCEEECCceEEEEEEeCC--EEEEEEECCc-EEECCEEEECCccch
Confidence 3445678999999999999987542 2345777777 799999999999864
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0027 Score=61.71 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=34.0
Q ss_pred ccCccCCceEEEeCceEE---------EEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 223 HGSSRDTKITIEYSCEVE---------RIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~---------~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
.+.+++.|++++++++|+ ++..+++ .+.|.+++| ++.+|.||+|+|...
T Consensus 179 ~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~---~v~v~~~~g-~i~a~~VV~A~G~~s 236 (405)
T 3c4n_A 179 AQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNT---HQIVVHETR-QIRAGVIIVAAGAAG 236 (405)
T ss_dssp HHHHHTTTCEEECSCEEEEETTEEEEECBCC----------CBCCE-EEEEEEEEECCGGGH
T ss_pred HHHHHHCCCEEEcCCEEEeccccccccceEeeCC---eEEEEECCc-EEECCEEEECCCccH
Confidence 344466899999999999 7765542 235666666 799999999999864
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0039 Score=62.90 Aligned_cols=50 Identities=8% Similarity=0.062 Sum_probs=38.9
Q ss_pred ccC-CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 226 SRD-TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 226 l~~-~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
+++ .|++++.+ .|++++.+++ +..+.+.+++|.++.+|+||.|+|.....
T Consensus 185 a~~~~Gv~i~~~-~v~~i~~~~~-g~~~~v~~~~g~~i~ad~vV~AdG~~S~~ 235 (526)
T 2pyx_A 185 CTQKLGVTHIRD-HVSQIINNQH-GDIEKLITKQNGEISGQLFIDCTGAKSLL 235 (526)
T ss_dssp HHHTSCCEEEEC-CEEEEEECTT-SCEEEEEESSSCEEECSEEEECSGGGCCC
T ss_pred HHhcCCCEEEEe-EEEEEEecCC-CcEEEEEECCCCEEEcCEEEECCCcchHH
Confidence 345 79999999 6999986543 23456778887789999999999997654
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00095 Score=67.53 Aligned_cols=35 Identities=20% Similarity=0.452 Sum_probs=32.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
+||+||||||.||+.+|.+|.+ +.+|+|+|+.+..
T Consensus 26 ~yD~IIVGsG~AG~v~A~rLse---g~~VlvLEaG~~~ 60 (536)
T 1ju2_A 26 SYDYVIVGGGTSGCPLAATLSE---KYKVLVLERGSLP 60 (536)
T ss_dssp EEEEEEECCSTTHHHHHHHHTT---TSCEEEECSSBCG
T ss_pred cccEEEECccHHHHHHHHHHhc---CCcEEEEecCCCc
Confidence 4899999999999999999999 6799999998764
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00088 Score=68.05 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=33.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
.||+||||||.||+.+|.+|.+. ++.+|+|||+.+..
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~-~~~~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTED-PDVSVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTS-TTCCEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhC-cCCcEEEEecCCcc
Confidence 58999999999999999999983 58999999998754
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0064 Score=61.65 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=29.8
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
.+|+|||+|+.|+-+|..|+ |.+|+++++.+..
T Consensus 27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~ 61 (549)
T 2r0c_A 27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGT 61 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 47999999999999999996 9999999988754
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.01 Score=55.48 Aligned_cols=33 Identities=6% Similarity=0.255 Sum_probs=28.7
Q ss_pred CeEEEEcCchhHHHHHHHhc----CCcEEEEEeCCCc
Q psy1545 136 KKIVVIGNGGIATELVHELS----NVDIVWVVKDKHI 168 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~~~ 168 (454)
.+++|||+|+.|+.+|..|+ |.+|+++++.+..
T Consensus 66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ 102 (326)
T 2gjc_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 102 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccc
Confidence 38999999999999998884 7899999987654
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0082 Score=60.11 Aligned_cols=50 Identities=10% Similarity=-0.039 Sum_probs=38.3
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEec---CCc--EEecCEEEEeeccCcC
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---NGH--THACDIVVSAIGVVPN 276 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g~--~~~~D~vi~a~G~~p~ 276 (454)
+.+++.|++++++++|+++..+++ .+.+.+. +|+ ++.+|.||.|+|....
T Consensus 157 ~~a~~~Gv~i~~~~~V~~l~~~~~---~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~ 211 (501)
T 2qcu_A 157 QMVVRKGGEVLTRTRATSARRENG---LWIVEAEDIDTGKKYSWQARGLVNATGPWVK 211 (501)
T ss_dssp HHHHHTTCEEECSEEEEEEEEETT---EEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred HHHHHcCCEEEcCcEEEEEEEeCC---EEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence 344668999999999999987542 4556663 564 7999999999998754
|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0017 Score=65.91 Aligned_cols=37 Identities=35% Similarity=0.574 Sum_probs=33.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++|++|||+|++|+.+|.+|.+. ++.+|+|+|+.+..
T Consensus 13 ~~d~~ivG~G~~G~~~a~~l~~~-~~~~v~~~e~g~~~ 49 (546)
T 2jbv_A 13 EFDYIVVGGGSAGAAVAARLSED-PAVSVALVEAGPDD 49 (546)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSSCCC
T ss_pred cCCEEEECcCHHHHHHHHHHHhC-CCCCEEEEecCCcC
Confidence 58999999999999999999986 57899999998764
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.011 Score=55.69 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=29.2
Q ss_pred CCeEEEEcCchhHHHHHHHhc----CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS----NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~~~ 168 (454)
...++|||+|+.|+.+|..|+ |.+|+++++.+.+
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~ 116 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAP 116 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCcc
Confidence 357999999999999998874 7899999987654
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0014 Score=67.86 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=32.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCC--------CeEEEECCCC-cc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPG--------ESIGLVTPSG-IV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g--------~~v~lie~~~-~~ 39 (454)
++|+|||||++|++||+.|++. + .+|+|+|+++ .+
T Consensus 57 ~~v~IiGaGiaGL~aA~~L~~~--g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 57 YRIAIVGGGAGGIAALYELGRL--AATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH--HTTSCTTCEEEEEEECCCTTBG
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CcccccCCCceEEEEeccCccc
Confidence 5899999999999999999998 5 8999999998 66
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.022 Score=56.98 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=32.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++|+|||+|..|.-++..|++..++.+|+++-+.+..
T Consensus 247 KrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~~ 283 (501)
T 4b63_A 247 YNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAM 283 (501)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSSC
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 4699999999999999999987667899999988643
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.019 Score=60.54 Aligned_cols=34 Identities=18% Similarity=0.406 Sum_probs=29.8
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS 169 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~ 169 (454)
.+++|||+|..|+-+|..|. |.+|+++++.+++-
T Consensus 337 ~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~g 372 (776)
T 4gut_A 337 KSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIG 372 (776)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSC
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeccccee
Confidence 58999999999999999886 99999999866543
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0028 Score=63.68 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++|++|||+|++|+.+|.+|.+. +.+|+|+|+....
T Consensus 11 ~~d~~iiG~G~~g~~~a~~l~~~--~~~v~~~e~~~~~ 46 (507)
T 1coy_A 11 RVPALVIGSGYGGAVAALRLTQA--GIPTQIVEMGRSW 46 (507)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCCS
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCcEEEEECCCCC
Confidence 58999999999999999999996 9999999998643
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0026 Score=63.77 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=33.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++|++|||+|++|+.+|..|.+. +.+|+|||+.+..
T Consensus 5 ~~d~~iiG~G~~g~~~a~~l~~~--~~~v~~~e~~~~~ 40 (504)
T 1n4w_A 5 YVPAVVIGTGYGAAVSALRLGEA--GVQTLMLEMGQLW 40 (504)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHhC--CCcEEEEeCCCCC
Confidence 58999999999999999999996 8999999998754
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.02 Score=58.54 Aligned_cols=51 Identities=16% Similarity=0.059 Sum_probs=36.0
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEe---cCCc--EEecCEEEEeeccCc
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL---TNGH--THACDIVVSAIGVVP 275 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~---~~g~--~~~~D~vi~a~G~~p 275 (454)
+.+++.||++++++.++++..+++ +....+.. .+|+ ++.++.||+|+|-..
T Consensus 151 ~~~~~~gv~i~~~~~v~~L~~~~~-g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~ 206 (588)
T 2wdq_A 151 QQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTALCIETGEVVYFKARATVLATGGAG 206 (588)
T ss_dssp HHHHHTTCEEEETEEEEEEEECTT-SCEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred HHHHhCCCEEEeCcEEEEEEECCC-CEEEEEEEEEcCCCeEEEEEcCEEEECCCCCc
Confidence 334567999999999999986421 22334443 4564 689999999998744
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.01 Score=61.38 Aligned_cols=52 Identities=19% Similarity=0.179 Sum_probs=37.2
Q ss_pred cCccCCce--EEEeCceEEEEEcCCC-CccceEEEec------CC--cEEecCEEEEeeccCc
Q psy1545 224 GSSRDTKI--TIEYSCEVERIVDSED-DTCNAYVKLT------NG--HTHACDIVVSAIGVVP 275 (454)
Q Consensus 224 ~~l~~~gv--~i~~~~~v~~i~~~~~-~~~~~~v~~~------~g--~~~~~D~vi~a~G~~p 275 (454)
+.+++.|+ ++++++++++++.+++ .+..+.+.+. +| +++.+|+||.|.|.+.
T Consensus 149 ~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S 211 (639)
T 2dkh_A 149 ERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARS 211 (639)
T ss_dssp HHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTC
T ss_pred HHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcch
Confidence 44455665 9999999999986542 1124566654 45 5799999999999865
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.004 Score=63.64 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=33.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++|++|||+|++|+.+|.+|.+. ++.+|+|||+....
T Consensus 24 ~~d~iivG~G~~g~~~a~~l~~~-~~~~v~~~e~g~~~ 60 (587)
T 1gpe_A 24 TYDYIIAGGGLTGLTVAAKLTEN-PKIKVLVIEKGFYE 60 (587)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTS-TTCCEEEEESSCCC
T ss_pred cCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEecCCcc
Confidence 48999999999999999999993 38999999998754
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.006 Score=62.39 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=36.9
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
|+||++|||+|..|...|..|++. |.+|++||++++.++.
T Consensus 7 ~~~D~~i~GtGl~~~~~a~~~~~~--g~~vl~id~~~~~gg~ 46 (650)
T 1vg0_A 7 SDFDVIVIGTGLPESIIAAACSRS--GQRVLHVDSRSYYGGN 46 (650)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCGG
T ss_pred CcCCEEEECCcHHHHHHHHHHHhC--CCEEEEEcCCCcccCc
Confidence 369999999999999999999998 9999999999988753
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.02 Score=56.78 Aligned_cols=51 Identities=20% Similarity=0.057 Sum_probs=35.1
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEec-CCcEEecCEEEEeeccCcCc
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT-NGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~-~g~~~~~D~vi~a~G~~p~~ 277 (454)
+.+++.||+++.++.+ ++..+++ ....+... ++.++.+|.||+|+|..+..
T Consensus 127 ~~~~~~gv~i~~~~~v-~l~~~~~--~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~ 178 (472)
T 2e5v_A 127 KLAREEGIPIIEDRLV-EIRVKDG--KVTGFVTEKRGLVEDVDKLVLATGGYSYL 178 (472)
T ss_dssp HHHHHTTCCEECCCEE-EEEEETT--EEEEEEETTTEEECCCSEEEECCCCCGGG
T ss_pred HHHHhCCCEEEECcEE-EEEEeCC--EEEEEEEEeCCCeEEeeeEEECCCCCccc
Confidence 3335679999999999 9865442 23334432 22357899999999998754
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.034 Score=56.94 Aligned_cols=49 Identities=18% Similarity=0.036 Sum_probs=35.2
Q ss_pred cCccCCc-eEEEeCceEEEEEcCCCCccceEEE---ecCCc--EEecCEEEEeeccC
Q psy1545 224 GSSRDTK-ITIEYSCEVERIVDSEDDTCNAYVK---LTNGH--THACDIVVSAIGVV 274 (454)
Q Consensus 224 ~~l~~~g-v~i~~~~~v~~i~~~~~~~~~~~v~---~~~g~--~~~~D~vi~a~G~~ 274 (454)
+.+++.| |+++.++.+.++..++ +....+. +.+|+ .+.++.||+|+|..
T Consensus 142 ~~~~~~gnv~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~ 196 (602)
T 1kf6_A 142 QTSLQFPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGA 196 (602)
T ss_dssp HHHTTCTTEEEEETEEEEEEEEET--TEEEEEEEEETTTTEEEEEECSCEEECCCCC
T ss_pred HHHHhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCCC
Confidence 3345567 9999999999987654 2233332 25675 68999999999974
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0034 Score=60.47 Aligned_cols=33 Identities=30% Similarity=0.303 Sum_probs=29.0
Q ss_pred CeEEEEcCchhHHHHHHHhc----CCcEEEEEeCCCc
Q psy1545 136 KKIVVIGNGGIATELVHELS----NVDIVWVVKDKHI 168 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~~~ 168 (454)
++|+|||||+.|+.+|..|. |.+|+++++.+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~ 37 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ 37 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence 37999999999999999884 8999999987654
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=95.20 E-value=0.085 Score=54.08 Aligned_cols=50 Identities=14% Similarity=-0.033 Sum_probs=36.1
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEe---cCCc--EEecCEEEEeeccCc
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL---TNGH--THACDIVVSAIGVVP 275 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~---~~g~--~~~~D~vi~a~G~~p 275 (454)
+.+++.||+++.++.+.++..++ +....+.. .+|+ .+.++.||+|+|-..
T Consensus 163 ~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 217 (621)
T 2h88_A 163 GRSLRYDTSYFVEYFALDLLMEN--GECRGVIALCIEDGTIHRFRAKNTVIATGGYG 217 (621)
T ss_dssp HHHTTSCCEEEETEEEEEEEEET--TEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred HHHHhCCCEEEEceEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 33456899999999999987643 23334443 4564 689999999998755
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.017 Score=46.74 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=32.0
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
|+.+++|+|.|..|...|..|.+. |.+|+++|+++.
T Consensus 6 ~~~~viIiG~G~~G~~la~~L~~~--g~~v~vid~~~~ 41 (140)
T 3fwz_A 6 ICNHALLVGYGRVGSLLGEKLLAS--DIPLVVIETSRT 41 (140)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCHH
Confidence 346799999999999999999998 899999999753
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.015 Score=52.31 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=29.7
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
-.|+|||+|+.|+-+|..|+ |.+|+++++++.+
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~ 37 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS 37 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 35999999999999999997 9999999988765
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.022 Score=58.93 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=43.6
Q ss_pred ccCcCcccccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccCh----HHHHHHHHHHHhhhcC
Q psy1545 272 GVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLW----TQAKHMGTYAAKCMVG 346 (454)
Q Consensus 272 G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~----~~A~~~g~~aa~~i~~ 346 (454)
|..|... .++..+-.....|+|.||...||++|++||+|+|+.......+ +++ ..+.-.|+.|+.+++.
T Consensus 354 GiD~~~~-~ipv~p~~hyt~GGi~vd~~~~v~IpGLYAaGE~a~~g~hGan-----rlggnsL~~~~vfGr~Ag~~aa~ 426 (660)
T 2bs2_A 354 GIDPAEK-WAPVLPMQHYSMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFN-----RLGGNSVSEAVVAGMIVGEYFAE 426 (660)
T ss_dssp CCCTTTS-CEEECCEEEEECCEEECCTTSBCSSBTEEECGGGEECCSSTTC-----CCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccc-ceEeeeeeeeccceEEECCCCceecCCEEeccccccccccCCC-----CCchHHHHHHHHHHHHHHHHHHH
Confidence 5555544 3322222334579999999999999999999998754333322 222 2345557777777654
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.033 Score=45.79 Aligned_cols=35 Identities=11% Similarity=0.270 Sum_probs=31.0
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+.+++|+|+|..|...+..|.+. +.+|+++|+++
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~--g~~V~vid~~~ 36 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQR--GQNVTVISNLP 36 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHT--TCCEEEEECCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEECCC
Confidence 146799999999999999999998 89999999863
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.027 Score=43.63 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=30.6
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCC-CeEEEECCCC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPG-ESIGLVTPSG 37 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g-~~v~lie~~~ 37 (454)
|+++++|+|+|..|..++..|.+. | .+|+++++++
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~--g~~~v~~~~r~~ 39 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTS--SNYSVTVADHDL 39 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHC--SSEEEEEEESCH
T ss_pred CcCeEEEECCCHHHHHHHHHHHhC--CCceEEEEeCCH
Confidence 346899999999999999999998 6 7899998864
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.019 Score=57.96 Aligned_cols=58 Identities=19% Similarity=0.157 Sum_probs=39.0
Q ss_pred cCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 289 APDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 289 ~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
...|+|.||...||++|++||+|+|+.......+... -.....|.-.|+.|+++++..
T Consensus 352 ~t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-gnsl~~~~vfG~~Ag~~aa~~ 409 (540)
T 1chu_A 352 YTCGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMA-SNSLLECLVYGWSAAEDITRR 409 (540)
T ss_dssp EESCEEECCTTCBCSSBTEEECGGGEECSSSTTSCCT-THHHHHHHHHHHHHHHHHHHH
T ss_pred eecCcEEECCCCCCccCCEEeccccccccccCCCcCc-chhHHHHHHHHHHHHHHHHHh
Confidence 3479999999999999999999999854333322100 001223566688888887653
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.023 Score=58.72 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=29.9
Q ss_pred cccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 298 ELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 298 ~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
..++|++|++||||||+...... .+.++..+|++++.+++.
T Consensus 446 ~~~~t~v~gl~a~Ge~~~~~~hg--------~~~~sl~~g~~ag~~a~~ 486 (662)
T 3gyx_A 446 YNRMTTVEGLWTCADGVGASGHK--------FSSGSHAEGRIVGKQMVR 486 (662)
T ss_dssp CTTBCSSBTEECCSSSBCSCCCC--------HHHHHHHHHHHHHHHHHH
T ss_pred cCCCCccCCeEeCccccccccCc--------cHhHHHHHHHHHHHHHHH
Confidence 67889999999999998644222 245667778777776654
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.038 Score=44.60 Aligned_cols=33 Identities=33% Similarity=0.534 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+++|+|+|..|...|..|.+. |.+|+++|+++
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~--g~~V~~id~~~ 39 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAA--GKKVLAVDKSK 39 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEECCH
Confidence 4799999999999999999998 89999999864
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.024 Score=56.58 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=28.3
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS 169 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~ 169 (454)
|+|+|||+|..|+-+|..|+ |.+|+++++++++-
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~G 37 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPG 37 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC----
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCC
Confidence 68999999999999999997 99999999877653
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.045 Score=45.05 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+++|+|+|..|...|..|.+. |.+|+++++++.
T Consensus 20 ~~v~IiG~G~iG~~la~~L~~~--g~~V~vid~~~~ 53 (155)
T 2g1u_A 20 KYIVIFGCGRLGSLIANLASSS--GHSVVVVDKNEY 53 (155)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGG
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHH
Confidence 5799999999999999999998 889999998753
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.036 Score=54.54 Aligned_cols=80 Identities=14% Similarity=0.115 Sum_probs=53.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
.+|.|||.|.+|+++|..|+++ |++|++.|..+... ....+.+.+ ++++..+.- +
T Consensus 10 k~v~viG~G~sG~s~A~~l~~~--G~~V~~~D~~~~~~------------------~~~~~~L~~~gi~~~~g~~----~ 65 (451)
T 3lk7_A 10 KKVLVLGLARSGEAAARLLAKL--GAIVTVNDGKPFDE------------------NPTAQSLLEEGIKVVCGSH----P 65 (451)
T ss_dssp CEEEEECCTTTHHHHHHHHHHT--TCEEEEEESSCGGG------------------CHHHHHHHHTTCEEEESCC----C
T ss_pred CEEEEEeeCHHHHHHHHHHHhC--CCEEEEEeCCcccC------------------ChHHHHHHhCCCEEEECCC----h
Confidence 5799999999999999999998 99999999865310 011233444 777654321 1
Q ss_pred cccEEEeccCcEEEecEEEEecCCCCCCCCCC
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGASPRKIWYS 113 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~ 113 (454)
.. + . ++ .+|.+|+++|..+..|.+.
T Consensus 66 ~~--~-~-~~---~~d~vv~spgi~~~~p~~~ 90 (451)
T 3lk7_A 66 LE--L-L-DE---DFCYMIKNPGIPYNNPMVK 90 (451)
T ss_dssp GG--G-G-GS---CEEEEEECTTSCTTSHHHH
T ss_pred HH--h-h-cC---CCCEEEECCcCCCCChhHH
Confidence 10 0 0 11 1799999999877766543
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.05 Score=50.89 Aligned_cols=35 Identities=31% Similarity=0.411 Sum_probs=30.9
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
|+++|.|||+|.-|...|..|++. |.+|+++++++
T Consensus 1 M~mkI~IiGaGaiG~~~a~~L~~~--g~~V~~~~r~~ 35 (320)
T 3i83_A 1 MSLNILVIGTGAIGSFYGALLAKT--GHCVSVVSRSD 35 (320)
T ss_dssp --CEEEEESCCHHHHHHHHHHHHT--TCEEEEECSTT
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCh
Confidence 778999999999999999999997 88999999865
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=94.03 E-value=0.054 Score=43.34 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=29.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++++|||+|..|...|..|.+. +.+|+++|+++
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~--g~~v~~~d~~~ 37 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDK 37 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCH
Confidence 5799999999999999999997 88999998854
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.16 Score=52.61 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=28.0
Q ss_pred CeEEEEcCchhHHHHHHHh-------cCCcEEEEEeCCCc
Q psy1545 136 KKIVVIGNGGIATELVHEL-------SNVDIVWVVKDKHI 168 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l-------~g~~V~~i~~~~~~ 168 (454)
..|+|||||+.|+-+|..| .|.+|+++++.+..
T Consensus 9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~ 48 (665)
T 1pn0_A 9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 48 (665)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred CcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCC
Confidence 4799999999999999876 37899999987654
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.056 Score=50.33 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=29.8
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
|+++|.|||+|.-|.+.|..|++. |.+|+++++++
T Consensus 1 M~mkI~IiGaGaiG~~~a~~L~~~--g~~V~~~~r~~ 35 (312)
T 3hn2_A 1 MSLRIAIVGAGALGLYYGALLQRS--GEDVHFLLRRD 35 (312)
T ss_dssp ---CEEEECCSTTHHHHHHHHHHT--SCCEEEECSTT
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC--CCeEEEEEcCc
Confidence 778999999999999999999997 88999998864
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.064 Score=49.46 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=30.6
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
|+++|.|||+|.-|...|..|.+. |.+|+++++++
T Consensus 1 M~mkI~iiGaGa~G~~~a~~L~~~--g~~V~~~~r~~ 35 (294)
T 3g17_A 1 MSLSVAIIGPGAVGTTIAYELQQS--LPHTTLIGRHA 35 (294)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHH--CTTCEEEESSC
T ss_pred CCcEEEEECCCHHHHHHHHHHHHC--CCeEEEEEecc
Confidence 778999999999999999999998 78999999874
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.11 Score=45.52 Aligned_cols=33 Identities=27% Similarity=0.530 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+|+|||||..|...+..|.+. |.+|+|++++.
T Consensus 32 k~VLVVGgG~va~~ka~~Ll~~--GA~VtVvap~~ 64 (223)
T 3dfz_A 32 RSVLVVGGGTIATRRIKGFLQE--GAAITVVAPTV 64 (223)
T ss_dssp CCEEEECCSHHHHHHHHHHGGG--CCCEEEECSSC
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCC
Confidence 5799999999999999999998 89999999853
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.077 Score=46.42 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+|+|+|+|..|...|..|.+. +.+|+++|+++.
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~--g~~v~vid~~~~ 34 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSR--KYGVVIINKDRE 34 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHT--TCCEEEEESCHH
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHH
Confidence 699999999999999999998 899999998653
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=92.41 E-value=0.12 Score=50.77 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=32.3
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
|+++|.|||.|..|+..|..|++. |++|+++|+++.
T Consensus 1 M~mkI~VIG~G~vG~~lA~~La~~--G~~V~~~D~~~~ 36 (450)
T 3gg2_A 1 MSLDIAVVGIGYVGLVSATCFAEL--GANVRCIDTDRN 36 (450)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhc--CCEEEEEECCHH
Confidence 667899999999999999999998 899999998753
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.38 E-value=0.12 Score=47.86 Aligned_cols=34 Identities=35% Similarity=0.514 Sum_probs=30.3
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
|+++|.|||+|.-|...|..|. . +.+|+++++++
T Consensus 1 M~mkI~IiGaGa~G~~~a~~L~-~--g~~V~~~~r~~ 34 (307)
T 3ego_A 1 MSLKIGIIGGGSVGLLCAYYLS-L--YHDVTVVTRRQ 34 (307)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-T--TSEEEEECSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHh-c--CCceEEEECCH
Confidence 7789999999999999999999 6 88999998864
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=92.33 E-value=0.1 Score=51.86 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=31.9
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISA 170 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~ 170 (454)
+++++|||+|.+|+.+|..|. |.+|+++++++++-.
T Consensus 33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg 70 (498)
T 2iid_A 33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG 70 (498)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCC
Confidence 578999999999999999986 999999998876544
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=92.28 E-value=0.12 Score=41.51 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+++|+|+|..|...+..|.+. |.+|+++++.+
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~~--g~~v~~~d~~~ 39 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHRM--GHEVLAVDINE 39 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT--TCCCEEEESCH
T ss_pred CcEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 4699999999999999999998 78999998864
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=91.95 E-value=0.12 Score=50.19 Aligned_cols=33 Identities=24% Similarity=0.186 Sum_probs=29.7
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
++++|||||..|+-+|..|+ |.+|+++++.+++
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~ 35 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI 35 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 47999999999999999996 9999999987764
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=91.95 E-value=0.16 Score=47.11 Aligned_cols=35 Identities=29% Similarity=0.246 Sum_probs=30.1
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSG 37 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~ 37 (454)
|+++|.|||+|..|.+.|..|+.. +. +|+++|..+
T Consensus 1 M~~kI~VIGaG~vG~~~a~~la~~--g~~~v~L~Di~~ 36 (309)
T 1ur5_A 1 MRKKISIIGAGFVGSTTAHWLAAK--ELGDIVLLDIVE 36 (309)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCCeEEEEeCCc
Confidence 667899999999999999999987 54 799999764
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=91.78 E-value=0.097 Score=47.45 Aligned_cols=33 Identities=33% Similarity=0.463 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
..|+|||||..|...+..|.+. |.+|+||+++.
T Consensus 14 k~VLVVGgG~va~rka~~Ll~~--Ga~VtViap~~ 46 (274)
T 1kyq_A 14 KRILLIGGGEVGLTRLYKLMPT--GCKLTLVSPDL 46 (274)
T ss_dssp CEEEEEEESHHHHHHHHHHGGG--TCEEEEEEEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhC--CCEEEEEcCCC
Confidence 5799999999999999999998 99999998754
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=91.57 E-value=0.14 Score=49.71 Aligned_cols=52 Identities=19% Similarity=0.186 Sum_probs=39.3
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
+.+++.|++|++++.|++|..+++ ....|.++ |+++++|.||+|+|......
T Consensus 204 ~~~~~~G~~i~~~~~V~~i~~~~~--~~~gv~~~-g~~~~ad~VV~a~~~~~~~~ 255 (425)
T 3ka7_A 204 TVISANGGKIHTGQEVSKILIENG--KAAGIIAD-DRIHDADLVISNLGHAATAV 255 (425)
T ss_dssp HHHHHTTCEEECSCCEEEEEEETT--EEEEEEET-TEEEECSEEEECSCHHHHHH
T ss_pred HHHHHcCCEEEECCceeEEEEECC--EEEEEEEC-CEEEECCEEEECCCHHHHHH
Confidence 445667999999999999987652 23335554 77899999999998865444
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=91.54 E-value=0.13 Score=50.27 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=28.9
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDK 166 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~ 166 (454)
.++|+|||||+.|+.+|..|+ |.+|+++++.+
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 468999999999999999997 99999999876
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=91.52 E-value=0.42 Score=41.84 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=27.7
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEe
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVK 164 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~ 164 (454)
.+++++|||||.+|...+..|. |++|+++.+
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap 62 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAP 62 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence 3799999999999999999886 999999854
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.39 E-value=0.19 Score=48.19 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=31.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+|+|||+|.+|+.+|..++.. |.+|+++|+.+.
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~ 224 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRL--GAVVSATDVRPA 224 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSTT
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEcCCHH
Confidence 4799999999999999999998 889999998864
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=91.35 E-value=0.16 Score=50.55 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=30.5
Q ss_pred CeEEEEcCchhHHHHHHHhc---CCcEEEEEeCCCccc
Q psy1545 136 KKIVVIGNGGIATELVHELS---NVDIVWVVKDKHISA 170 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~---g~~V~~i~~~~~~~~ 170 (454)
-.|+|||||.+|+-+|..|+ |.+|+++++++++-.
T Consensus 11 ~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG 48 (513)
T 4gde_A 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG 48 (513)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCG
T ss_pred CCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcC
Confidence 36999999999999999884 899999998887654
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=91.20 E-value=0.22 Score=46.57 Aligned_cols=34 Identities=18% Similarity=0.068 Sum_probs=30.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~ 37 (454)
+++|.|||+|..|.+.|..|+.. ++ +|+++|.++
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~--g~~~V~L~Di~~ 48 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQK--DLGDVYMFDIIE 48 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSST
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCCeEEEEECCH
Confidence 35899999999999999999997 66 899999875
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=91.14 E-value=0.2 Score=46.26 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=30.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
+++|.|||+|..|...|..|.+. |++|+++++++
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~r~~ 36 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQG--GNDVTLIDQWP 36 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCH
T ss_pred CCeEEEECcCHHHHHHHHHHHhC--CCcEEEEECCH
Confidence 46899999999999999999997 88999998764
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=91.07 E-value=0.18 Score=48.10 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=31.5
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeC-CCccc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKD-KHISA 170 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~-~~~~~ 170 (454)
+.+|+|||+|.+|+-+|..|. |.+|++++++ +++-.
T Consensus 44 ~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGG 82 (376)
T 2e1m_A 44 PKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGG 82 (376)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBT
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCC
Confidence 679999999999999999996 9999999988 65543
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.92 E-value=0.17 Score=49.91 Aligned_cols=46 Identities=17% Similarity=0.097 Sum_probs=35.2
Q ss_pred ccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccC
Q psy1545 226 SRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVV 274 (454)
Q Consensus 226 l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~ 274 (454)
+++.|++|++++.|++|+..++ ..+.|.+ ++.++.+|.||+|++..
T Consensus 244 l~~~g~~i~~~~~V~~i~~~~~--~~~~v~~-~~~~~~ad~vv~a~p~~ 289 (477)
T 3nks_A 244 LTSRGVSVLRGQPVCGLSLQAE--GRWKVSL-RDSSLEADHVISAIPAS 289 (477)
T ss_dssp HHHTTCEEECSCCCCEEEECGG--GCEEEEC-SSCEEEESEEEECSCHH
T ss_pred HHhcCCEEEeCCEEEEEEEcCC--ceEEEEE-CCeEEEcCEEEECCCHH
Confidence 3556899999999999987652 2356665 45579999999998764
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=90.91 E-value=0.2 Score=47.49 Aligned_cols=34 Identities=32% Similarity=0.516 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~~ 38 (454)
.+|||+|||.||+.+|..|... |. +|+++|+...
T Consensus 189 ~kVVi~GAGaAG~~iA~ll~~~--Ga~~I~v~D~~Gl 223 (398)
T 2a9f_A 189 VSIVVNGGGSAGLSITRKLLAA--GATKVTVVDKFGI 223 (398)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCEEEEEETTEE
T ss_pred cEEEEECCCHHHHHHHHHHHHc--CCCeEEEEECCCc
Confidence 5799999999999999999998 77 9999999753
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=90.86 E-value=0.17 Score=48.96 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=30.5
Q ss_pred CCeEEEEcCchhHHHHHHHhc--C-CcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--N-VDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g-~~V~~i~~~~~~ 168 (454)
..+++|||||..|+-+|..|. | .+|+++++++++
T Consensus 6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~ 42 (424)
T 2b9w_A 6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV 42 (424)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence 578999999999999999986 8 899999987765
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=90.82 E-value=0.18 Score=47.52 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=29.1
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
.+|+|||+|..|+-+|..|+ |.+|+++++.+.
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~ 38 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEG 38 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 47999999999999999996 999999998753
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=90.77 E-value=0.14 Score=52.88 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=29.5
Q ss_pred ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 299 LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 299 ~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
..+|++|++||+|+|++... .++...+..+|++|+++++..
T Consensus 426 ~~~t~I~GLyAaGe~a~~~~--------~r~~~~sl~~G~~ag~~aa~~ 466 (643)
T 1jnr_A 426 NRMTTVKGLFAIGDCAGANP--------HKFSSGSFTEGRIAAKAAVRF 466 (643)
T ss_dssp TTBCSSBTEEECGGGBCSCC--------CCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCceeCCEEeeeccccccc--------cccchhHHHHHHHHHHHHHHH
Confidence 34689999999999987531 134456777788888776653
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=90.73 E-value=0.24 Score=46.11 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=29.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCC--eEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGE--SIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~--~v~lie~~~ 37 (454)
++|+|||+|..|.+.|..|.+. +. +|+++|+++
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~--g~~~~V~l~d~~~ 42 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQR--GIAREIVLEDIAK 42 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCCh
Confidence 5899999999999999999987 66 999999864
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=90.71 E-value=0.22 Score=47.29 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+|+|||+|..|+.+|..++.. |.+|+++|+.+.
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~ 218 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRL--GAKTTGYDVRPE 218 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSGG
T ss_pred CEEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHH
Confidence 4799999999999999999998 889999998753
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=90.67 E-value=0.24 Score=45.06 Aligned_cols=35 Identities=26% Similarity=0.101 Sum_probs=30.9
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
|+++|+|.|+|..|...+..|.+. |.+|+.+.+.+
T Consensus 4 m~~~ilVtGaG~iG~~l~~~L~~~--g~~V~~~~r~~ 38 (286)
T 3ius_A 4 MTGTLLSFGHGYTARVLSRALAPQ--GWRIIGTSRNP 38 (286)
T ss_dssp -CCEEEEETCCHHHHHHHHHHGGG--TCEEEEEESCG
T ss_pred CcCcEEEECCcHHHHHHHHHHHHC--CCEEEEEEcCh
Confidence 667899999999999999999998 89999998754
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=90.58 E-value=0.19 Score=48.80 Aligned_cols=32 Identities=13% Similarity=0.323 Sum_probs=29.0
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
+|+|||||..|+-+|..|+ |.+|+++++++++
T Consensus 3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~ 36 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL 36 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 6899999999999999986 9999999987654
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=90.46 E-value=0.18 Score=50.41 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=34.4
Q ss_pred eEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccC
Q psy1545 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVV 274 (454)
Q Consensus 231 v~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~ 274 (454)
.+|++++.|++|...++ ..+.|.+.+|+++.+|.||++++..
T Consensus 215 ~~i~~~~~V~~I~~~~~--~~v~v~~~~g~~~~ad~VI~t~p~~ 256 (516)
T 1rsg_A 215 NWLKLSCEVKSITREPS--KNVTVNCEDGTVYNADYVIITVPQS 256 (516)
T ss_dssp GGEETTCCEEEEEECTT--SCEEEEETTSCEEEEEEEEECCCHH
T ss_pred CEEEECCEEEEEEEcCC--CeEEEEECCCcEEECCEEEECCCHH
Confidence 56999999999987531 2578888999889999999998653
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=90.35 E-value=0.29 Score=45.88 Aligned_cols=33 Identities=18% Similarity=0.065 Sum_probs=29.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~ 37 (454)
++|+|||+|..|.+.|..|++. ++ +|+|+|.++
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~--g~~~V~L~D~~~ 43 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALR--ELADVVLYDVVK 43 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEECCh
Confidence 5799999999999999999997 66 899999875
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=90.33 E-value=0.29 Score=48.07 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=29.0
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCC
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDK 166 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~ 166 (454)
.++++.|+|.|.+|+-+|..|. |.+|+..++++
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~ 42 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP 42 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 3799999999999999988886 99999998654
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=90.33 E-value=0.2 Score=49.60 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=30.4
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
..+|+|||+|..|+-+|..|. |.+|+++++.+++
T Consensus 11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 46 (489)
T 2jae_A 11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRP 46 (489)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 578999999999999999986 8999999987654
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=90.28 E-value=0.26 Score=46.21 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=30.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS 36 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~ 36 (454)
.++|.|||+|.-|...|..|++. |.+|+++++.
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~--g~~V~~~~r~ 35 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALA--GEAINVLARG 35 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHT--TCCEEEECCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHC--CCEEEEEECh
Confidence 36899999999999999999998 8899999874
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=90.21 E-value=0.14 Score=50.26 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=30.8
Q ss_pred CCeEEEEcCchhHHHHHHHhc--C------CcEEEEEeCCCcc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--N------VDIVWVVKDKHIS 169 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g------~~V~~i~~~~~~~ 169 (454)
.++|+|||||.+|+-+|..|. | .+|+++++++++-
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~G 47 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVG 47 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSC
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCC
Confidence 468999999999999999997 7 8999999887653
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=90.19 E-value=0.35 Score=47.65 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=35.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
++||+|||+|.+|+++|..|++. |.+|+++|+++..++.
T Consensus 20 ~~dv~iiG~G~~g~~~a~~l~~~--g~~v~~~e~~~~~Gg~ 58 (475)
T 3p1w_A 20 HYDVIILGTGLKECILSGLLSHY--GKKILVLDRNPYYGGE 58 (475)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCGG
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeccCCCCCC
Confidence 48999999999999999999998 9999999999877653
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=89.98 E-value=0.31 Score=39.87 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=29.0
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCC
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDK 166 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~ 166 (454)
.+++++|+|+|.+|..++..|. |.+|+++.+++
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3689999999999999999886 88999998754
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.96 E-value=0.3 Score=45.81 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=31.0
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
|.++|.|||+|.-|...|..|.+. |++|+++++.+
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~--G~~V~~~~r~~ 47 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHEN--GEEVILWARRK 47 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSH
T ss_pred cCCcEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCH
Confidence 567899999999999999999998 88999998864
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=89.58 E-value=0.36 Score=44.89 Aligned_cols=33 Identities=15% Similarity=0.040 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~ 37 (454)
++|.|||+|..|.+.|..|++. +. +|+++|..+
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~--g~~~V~l~D~~~ 38 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKD--NLADVVLFDIAE 38 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCceEEEEeCCc
Confidence 6899999999999999999998 76 899999875
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=89.54 E-value=0.32 Score=46.06 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+.+|+|||||..|..+++.++++ |.+++++|+++.
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~--G~~vv~vd~~~~ 35 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKA--GMKVVLVDKNPQ 35 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCC
Confidence 14799999999999999999998 999999998764
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=89.52 E-value=0.24 Score=48.80 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=34.3
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEe---cCCcEEecCEEEEeeccC
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKL---TNGHTHACDIVVSAIGVV 274 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~---~~g~~~~~D~vi~a~G~~ 274 (454)
.|++|++++.|++|..+++ .+.|.+ .+|+++.+|.||+|++..
T Consensus 248 lg~~i~~~~~V~~i~~~~~---~~~v~~~~~~~g~~~~ad~vV~a~~~~ 293 (478)
T 2ivd_A 248 LGDAAHVGARVEGLAREDG---GWRLIIEEHGRRAELSVAQVVLAAPAH 293 (478)
T ss_dssp HGGGEESSEEEEEEECC-----CCEEEEEETTEEEEEECSEEEECSCHH
T ss_pred hhhhEEcCCEEEEEEecCC---eEEEEEeecCCCceEEcCEEEECCCHH
Confidence 4678999999999987653 367777 677889999999998764
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=89.51 E-value=0.31 Score=46.15 Aligned_cols=33 Identities=30% Similarity=0.324 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~ 37 (454)
.+|||+|+|.+|..+|..|... |. +|+++|+..
T Consensus 193 ~kVVv~GAGaAG~~iAkll~~~--G~~~I~v~Dr~G 226 (388)
T 1vl6_A 193 VKVVVNGIGAAGYNIVKFLLDL--GVKNVVAVDRKG 226 (388)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCEEEEEETTE
T ss_pred cEEEEECCCHHHHHHHHHHHhC--CCCeEEEEECCC
Confidence 5799999999999999999998 66 899999973
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=89.44 E-value=0.22 Score=48.64 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
.+|.|||.|.+|+++|..|.++ |++|++.|.....
T Consensus 6 ~~v~viG~G~~G~~~a~~l~~~--G~~v~~~D~~~~~ 40 (439)
T 2x5o_A 6 KNVVIIGLGLTGLSCVDFFLAR--GVTPRVMDTRMTP 40 (439)
T ss_dssp CCEEEECCHHHHHHHHHHHHTT--TCCCEEEESSSSC
T ss_pred CEEEEEeecHHHHHHHHHHHhC--CCEEEEEECCCCc
Confidence 5799999999999999999988 9999999987653
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=89.40 E-value=0.26 Score=47.02 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=39.4
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
.+.+++.|++++.++.|++++.+++ .+.+.+++| ++.+|.||+|+|....
T Consensus 157 ~~~~~~~Gv~i~~~~~v~~i~~~~~---~~~v~~~~g-~~~a~~vV~A~G~~~~ 206 (389)
T 2gf3_A 157 RELAEARGAKVLTHTRVEDFDISPD---SVKIETANG-SYTADKLIVSMGAWNS 206 (389)
T ss_dssp HHHHHHTTCEEECSCCEEEEEECSS---CEEEEETTE-EEEEEEEEECCGGGHH
T ss_pred HHHHHHCCCEEEcCcEEEEEEecCC---eEEEEeCCC-EEEeCEEEEecCccHH
Confidence 3444667999999999999987653 356776665 7999999999998754
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=89.39 E-value=0.31 Score=46.70 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=30.8
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISA 170 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~ 170 (454)
.+++|||+|.+|+.+|..|. |.+|+++++++++-.
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG 40 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 40 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCC
Confidence 58999999999999999986 899999999876643
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=89.38 E-value=0.4 Score=44.41 Aligned_cols=35 Identities=20% Similarity=0.161 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+|.|||+|..|.+.|..|++.+.+.+|+++|.++.
T Consensus 2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~ 36 (310)
T 1guz_A 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG 36 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence 69999999999999999998533789999998753
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=89.37 E-value=0.26 Score=47.05 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=28.1
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDK 166 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~ 166 (454)
++++|||||..|+++|..++ |.+|+++++++
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~ 34 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP 34 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 47999999999999999986 99999999765
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=89.21 E-value=0.3 Score=46.18 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=28.6
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDK 166 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~ 166 (454)
..+|+|||+|.+|+-+|..|+ |.+|+++++..
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 458999999999999999987 99999999754
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=89.19 E-value=0.25 Score=49.37 Aligned_cols=44 Identities=20% Similarity=0.127 Sum_probs=37.1
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
.|+++++++.|++|+.+++ .+.|.+.+|+++++|.||+|++...
T Consensus 225 lg~~i~~~~~V~~i~~~~~---~v~v~~~~g~~~~ad~VI~a~p~~~ 268 (520)
T 1s3e_A 225 LGDRVKLERPVIYIDQTRE---NVLVETLNHEMYEAKYVISAIPPTL 268 (520)
T ss_dssp HGGGEESSCCEEEEECSSS---SEEEEETTSCEEEESEEEECSCGGG
T ss_pred cCCcEEcCCeeEEEEECCC---eEEEEECCCeEEEeCEEEECCCHHH
Confidence 4788999999999987653 4668888998999999999998753
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=88.96 E-value=0.27 Score=48.30 Aligned_cols=48 Identities=15% Similarity=0.023 Sum_probs=36.9
Q ss_pred ccCCceEEEeCceEEEEEcC--CCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 226 SRDTKITIEYSCEVERIVDS--EDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 226 l~~~gv~i~~~~~v~~i~~~--~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
+++.|+++++++.|++|... + ++...|.+ +|+++.+|.||+++|..|.
T Consensus 252 ~~~~G~~i~~~~~V~~i~~~~~~--~~~~~V~~-~g~~~~ad~VV~a~~~~~~ 301 (453)
T 2bcg_G 252 SAIYGGTYMLDTPIDEVLYKKDT--GKFEGVKT-KLGTFKAPLVIADPTYFPE 301 (453)
T ss_dssp HHHTTCEEECSCCCCEEEEETTT--TEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred HHHcCCEEECCCEEEEEEEECCC--CeEEEEEE-CCeEEECCEEEECCCccch
Confidence 35578999999999999765 3 23345555 5788999999999998754
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=88.90 E-value=0.41 Score=43.53 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+|.|||+|.-|...|..|.+. |++|+++++++.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~r~~~ 34 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQ--GHEVQGWLRVPQ 34 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCC
T ss_pred eEEEECcCHHHHHHHHHHHhC--CCCEEEEEcCcc
Confidence 699999999999999999998 889999998753
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.86 E-value=0.33 Score=45.11 Aligned_cols=35 Identities=26% Similarity=0.097 Sum_probs=31.4
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCC-CeEEEECCCC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPG-ESIGLVTPSG 37 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g-~~v~lie~~~ 37 (454)
|.++|.|||.|.-|...|..|++. | ++|+++++.+
T Consensus 23 M~m~IgvIG~G~mG~~lA~~L~~~--G~~~V~~~dr~~ 58 (317)
T 4ezb_A 23 MMTTIAFIGFGEAAQSIAGGLGGR--NAARLAAYDLRF 58 (317)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTT--TCSEEEEECGGG
T ss_pred cCCeEEEECccHHHHHHHHHHHHc--CCCeEEEEeCCC
Confidence 456899999999999999999998 8 8999998865
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=88.85 E-value=0.34 Score=44.44 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=29.9
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
|+++|.|||+|..|...|..|.+. +++|+++++.+
T Consensus 4 M~m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~~ 38 (299)
T 1vpd_A 4 MTMKVGFIGLGIMGKPMSKNLLKA--GYSLVVSDRNP 38 (299)
T ss_dssp --CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCH
T ss_pred ccceEEEECchHHHHHHHHHHHhC--CCEEEEEeCCH
Confidence 556899999999999999999987 78999998764
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=88.78 E-value=0.39 Score=46.28 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+|+|||+|.+|+.++..++.. |.+|+++|+.+.
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~--Ga~V~v~D~~~~ 206 (401)
T 1x13_A 173 AKVMVIGAGVAGLAAIGAANSL--GAIVRAFDTRPE 206 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCGG
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHH
Confidence 4699999999999999999998 789999998754
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=88.65 E-value=0.37 Score=47.67 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=32.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++|.|||.|..|+..|..|++.+++++|+++|+++.
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~ 45 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTA 45 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence 589999999999999999999866789999998653
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=88.60 E-value=0.34 Score=48.08 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=30.6
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
..+++|||+|..|+-+|..|. |.+|+++++.+++
T Consensus 13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ 48 (504)
T 1sez_A 13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA 48 (504)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCC
Confidence 578999999999999999986 8999999987764
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=88.59 E-value=0.4 Score=42.68 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=31.0
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCC----eEEEECCCC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGE----SIGLVTPSG 37 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~----~v~lie~~~ 37 (454)
|+++|.|||.|.-|.+.|..|.+. ++ +|+++++++
T Consensus 1 M~~~i~iIG~G~mG~~~a~~l~~~--g~~~~~~V~~~~r~~ 39 (247)
T 3gt0_A 1 MDKQIGFIGCGNMGMAMIGGMINK--NIVSSNQIICSDLNT 39 (247)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHT--TSSCGGGEEEECSCH
T ss_pred CCCeEEEECccHHHHHHHHHHHhC--CCCCCCeEEEEeCCH
Confidence 667899999999999999999997 76 889888764
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=88.54 E-value=0.48 Score=43.21 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+|.|||+|.-|...|..|++. |++|+++|+++.
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~ 38 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFH--GFAVTAYDINTD 38 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHH
Confidence 4799999999999999999998 899999998753
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=88.52 E-value=0.39 Score=45.44 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++|.|||+|.-|.+.|..|++. |++|+++++++.
T Consensus 30 mkI~VIGaG~mG~alA~~La~~--G~~V~l~~r~~~ 63 (356)
T 3k96_A 30 HPIAILGAGSWGTALALVLARK--GQKVRLWSYESD 63 (356)
T ss_dssp SCEEEECCSHHHHHHHHHHHTT--TCCEEEECSCHH
T ss_pred CeEEEECccHHHHHHHHHHHHC--CCeEEEEeCCHH
Confidence 5899999999999999999998 889999998643
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=88.50 E-value=0.34 Score=46.76 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=28.2
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEEC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVT 34 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie 34 (454)
|.++|.|||+|..|.+.|..|++. .|++|++++
T Consensus 1 ~~mkI~ViGaG~~G~~~a~~La~~-~G~~V~~~~ 33 (404)
T 3c7a_A 1 MTVKVCVCGGGNGAHTLSGLAASR-DGVEVRVLT 33 (404)
T ss_dssp -CEEEEEECCSHHHHHHHHHHTTS-TTEEEEEEC
T ss_pred CCceEEEECCCHHHHHHHHHHHhC-CCCEEEEEe
Confidence 557899999999999999999872 278999998
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=88.47 E-value=0.37 Score=44.27 Aligned_cols=35 Identities=11% Similarity=0.028 Sum_probs=31.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+++|.|||.|.-|...|..|++. |++|+++++++.
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~ 49 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEW--PGGVTVYDIRIE 49 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTS--TTCEEEECSSTT
T ss_pred CCeEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCHH
Confidence 45899999999999999999998 899999998764
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=88.46 E-value=0.44 Score=42.54 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=31.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~~~ 39 (454)
.+|+|||+|..|..+|..|++. |. +++|+|+...-
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~--Gv~~i~lvD~d~v~ 67 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASA--GVGNLTLLDFDTVS 67 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCSEEEEECCCBCC
T ss_pred CeEEEEeeCHHHHHHHHHHHHc--CCCeEEEEcCCCcc
Confidence 5799999999999999999998 65 89999998643
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=88.44 E-value=0.45 Score=43.92 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCC--eEEEECCCC
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGE--SIGLVTPSG 37 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~--~v~lie~~~ 37 (454)
+|+|||+|..|.+.|..|+.. +. +|+++|.++
T Consensus 2 kI~VIGaG~vG~~la~~la~~--g~~~eV~L~D~~~ 35 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVLR--GSCSELVLVDRDE 35 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSSH
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCCH
Confidence 699999999999999999987 66 899999864
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=88.43 E-value=0.52 Score=40.77 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++|.|||+|..|.+.|..|.+. +.+|+++++++.
T Consensus 20 ~~I~iiG~G~mG~~la~~l~~~--g~~V~~~~~~~~ 53 (209)
T 2raf_A 20 MEITIFGKGNMGQAIGHNFEIA--GHEVTYYGSKDQ 53 (209)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECTTCC
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHH
Confidence 5799999999999999999998 889999998754
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=88.40 E-value=0.45 Score=44.88 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=30.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
+++|.|||+|..|...|..|++. |++|+++++.+
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~--g~~V~~~~r~~ 37 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDA 37 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCH
T ss_pred cCeEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCH
Confidence 36899999999999999999997 88999998864
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=88.37 E-value=0.43 Score=43.20 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=28.4
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKD 165 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~ 165 (454)
+++++|||||.+|...+..|. |++|+++...
T Consensus 13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~ 45 (274)
T 1kyq_A 13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (274)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 799999999999999999887 9999999753
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=88.34 E-value=0.49 Score=44.06 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~ 37 (454)
++|.|||+|..|.+.|..|+.. +. +|+|+|.++
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~--g~~~v~L~Di~~ 38 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQK--NLGDVVLFDIVK 38 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCH
Confidence 5899999999999999999987 66 899999764
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=88.33 E-value=0.66 Score=45.87 Aligned_cols=38 Identities=21% Similarity=0.424 Sum_probs=35.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
+||+|||||++|++||..|++. |.+|+|+|+++.+++.
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~--g~~v~v~E~~~~~GGr 77 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVA--GFKTLLLEARDRIGGR 77 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHT--TCCEEEECSSSBSBTT
T ss_pred CCEEEECCcHHHHHHHHHHHHC--CCCEEEEeCCCCCCCc
Confidence 7999999999999999999998 8999999999887654
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=88.11 E-value=0.52 Score=43.86 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~~ 38 (454)
.+|.|||+|..|.+.|..|+.. +. +++|+|..+.
T Consensus 8 ~kI~viGaG~vG~~~a~~l~~~--~~~~v~L~Di~~~ 42 (324)
T 3gvi_A 8 NKIALIGSGMIGGTLAHLAGLK--ELGDVVLFDIAEG 42 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCch
Confidence 5899999999999999999987 55 9999998653
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=88.09 E-value=0.33 Score=45.66 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=27.5
Q ss_pred CeEEEEcCchhHHHHHHHhc--C------CcEEEEEeCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--N------VDIVWVVKDK 166 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g------~~V~~i~~~~ 166 (454)
++|+|||||.+|+-+|..|+ | .+|+++++..
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 36899999999999999886 7 8999999864
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=88.05 E-value=0.49 Score=45.28 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+|+|||+|.+|+.++..++.. |.+|+++|+.+.
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~--Ga~V~~~d~~~~ 206 (384)
T 1l7d_A 173 ARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAA 206 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCST
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHH
Confidence 4799999999999999999998 789999998754
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=88.02 E-value=0.38 Score=46.99 Aligned_cols=44 Identities=9% Similarity=-0.034 Sum_probs=34.6
Q ss_pred cCCceEEEeCceEEEEEcCCCCccc-eEEEecCCcEEecCEEEEeeccC
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCN-AYVKLTNGHTHACDIVVSAIGVV 274 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~-~~v~~~~g~~~~~D~vi~a~G~~ 274 (454)
++.|+++++++.|++|..+++ . +.|.+ +|.++.+|.||+|++..
T Consensus 223 ~~lg~~i~~~~~V~~i~~~~~---~~v~v~~-~~~~~~ad~VI~a~p~~ 267 (453)
T 2yg5_A 223 EALGDDVFLNAPVRTVKWNES---GATVLAD-GDIRVEASRVILAVPPN 267 (453)
T ss_dssp HHHGGGEECSCCEEEEEEETT---EEEEEET-TTEEEEEEEEEECSCGG
T ss_pred HhcCCcEEcCCceEEEEEeCC---ceEEEEE-CCeEEEcCEEEEcCCHH
Confidence 344789999999999987653 3 55655 67789999999999875
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=88.02 E-value=0.36 Score=45.87 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=30.7
Q ss_pred Ccc-cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 1 MEF-TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 1 M~~-dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
|++ +|.|||+|.-|.+.|..|.+. |++|+++++.+
T Consensus 13 m~M~kI~iIG~G~mG~~la~~L~~~--G~~V~~~~r~~ 48 (366)
T 1evy_A 13 LYLNKAVVFGSGAFGTALAMVLSKK--CREVCVWHMNE 48 (366)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHTTT--EEEEEEECSCH
T ss_pred hccCeEEEECCCHHHHHHHHHHHhC--CCEEEEEECCH
Confidence 334 899999999999999999987 88999998864
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=87.99 E-value=0.44 Score=43.91 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
+++|.|||.|.-|...|..|++. |++|+++++++
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~ 40 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRA--GLSTWGADLNP 40 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--CCeEEEEECCH
Confidence 35799999999999999999998 89999998865
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=87.84 E-value=0.58 Score=43.49 Aligned_cols=35 Identities=11% Similarity=0.045 Sum_probs=29.9
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSG 37 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~ 37 (454)
-..+|.|||+|..|.+.|..|+.. +. +++++|..+
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~~--~~~~v~l~Di~~ 39 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALIK--QLGDVVLFDIAQ 39 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCceEEEEeCCh
Confidence 036899999999999999999987 44 999999875
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=87.82 E-value=0.42 Score=45.59 Aligned_cols=36 Identities=8% Similarity=0.057 Sum_probs=31.3
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCC-------CeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPG-------ESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g-------~~v~lie~~~~ 38 (454)
|.++|.|||+|.-|.+.|..|++. | .+|+++++.+.
T Consensus 20 ~~~kI~iIGaG~mG~alA~~L~~~--G~~~~~~~~~V~~~~r~~~ 62 (375)
T 1yj8_A 20 GPLKISILGSGNWASAISKVVGTN--AKNNYLFENEVRMWIRDEF 62 (375)
T ss_dssp SCBCEEEECCSHHHHHHHHHHHHH--HHHCTTBCSCEEEECCSCC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc--CCccCCCCCeEEEEECChh
Confidence 345899999999999999999987 6 89999998754
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=87.79 E-value=0.42 Score=45.94 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=31.0
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISA 170 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~ 170 (454)
..+++|||+|.+|+-+|..|+ |.+|+++++++++-.
T Consensus 29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG 66 (397)
T 3hdq_A 29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGG 66 (397)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSG
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCC
Confidence 358999999999999999886 899999998876543
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=87.72 E-value=0.45 Score=44.15 Aligned_cols=34 Identities=26% Similarity=0.188 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+|.|||+|.-|...|..++.. |++|+|+|.++.
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~--G~~V~l~D~~~~ 40 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASG--GFRVKLYDIEPR 40 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHH
T ss_pred CeEEEECCcHHHHHHHHHHHhC--CCeEEEEECCHH
Confidence 4699999999999999999998 999999998753
|
| >3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.52 E-value=0.42 Score=44.45 Aligned_cols=34 Identities=6% Similarity=0.249 Sum_probs=29.3
Q ss_pred CCeEEEEcCchhHHHHHHHhc----CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS----NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~~~ 168 (454)
...|+|||+|+.|+-+|..|+ |.+|+++++.+.+
T Consensus 65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~ 102 (326)
T 3fpz_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 102 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence 457999999999999998873 8999999987654
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=87.48 E-value=0.49 Score=44.98 Aligned_cols=33 Identities=24% Similarity=0.473 Sum_probs=29.3
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS 169 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~ 169 (454)
+++|||+|..|+-+|..|. |.+|+++++++++-
T Consensus 3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G 37 (367)
T 1i8t_A 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG 37 (367)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 6899999999999999987 89999999877543
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=87.43 E-value=0.44 Score=46.88 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=34.3
Q ss_pred eEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 231 v~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
++|++++.|++|+..++ .+.|.+.+| ++.+|.||+|++...
T Consensus 249 ~~i~~~~~V~~i~~~~~---~~~v~~~~g-~~~ad~vV~a~p~~~ 289 (475)
T 3lov_A 249 SEIRLETPLLAISREDG---RYRLKTDHG-PEYADYVLLTIPHPQ 289 (475)
T ss_dssp CEEESSCCCCEEEEETT---EEEEECTTC-CEEESEEEECSCHHH
T ss_pred CEEEcCCeeeEEEEeCC---EEEEEECCC-eEECCEEEECCCHHH
Confidence 69999999999987653 477888888 799999999987643
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=87.43 E-value=0.49 Score=49.01 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=29.2
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
.+|+|||||..|+-+|..|+ |.+|+++++.+.+
T Consensus 273 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~ 307 (676)
T 3ps9_A 273 REAAIIGGGIASALLSLALLRRGWQVTLYCADEAP 307 (676)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 58999999999999999986 9999999986533
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=87.43 E-value=0.39 Score=40.41 Aligned_cols=34 Identities=21% Similarity=0.136 Sum_probs=29.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+++|+|+|..|...|..|.+.. |.+|+++|+++
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~-g~~V~vid~~~ 73 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARY-GKISLGIEIRE 73 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHH-CSCEEEEESCH
T ss_pred CcEEEECCCHHHHHHHHHHHhcc-CCeEEEEECCH
Confidence 47999999999999999998741 56899998865
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=87.31 E-value=0.42 Score=46.46 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=29.3
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CC-cEEEEEeCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NV-DIVWVVKDKH 167 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~-~V~~i~~~~~ 167 (454)
..+|+|||||..|+-+|..|+ |. +|+++++.+.
T Consensus 6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~ 41 (438)
T 3dje_A 6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV 41 (438)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 357999999999999999986 88 9999998764
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=87.27 E-value=0.62 Score=37.87 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=27.8
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKD 165 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~ 165 (454)
.++++|+|+|.+|..++..|. |.+|++++++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 578999999999999999986 8999999874
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=87.21 E-value=0.32 Score=39.19 Aligned_cols=33 Identities=9% Similarity=0.163 Sum_probs=28.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+++|||+|..|...+..|.+. +.+|+++++.+
T Consensus 22 ~~v~iiG~G~iG~~~a~~l~~~--g~~v~v~~r~~ 54 (144)
T 3oj0_A 22 NKILLVGNGMLASEIAPYFSYP--QYKVTVAGRNI 54 (144)
T ss_dssp CEEEEECCSHHHHHHGGGCCTT--TCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCH
Confidence 4799999999999999999986 77888888764
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=87.21 E-value=0.46 Score=49.41 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=29.2
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
.+|+|||||..|+-+|..|+ |.+|+++++.+.+
T Consensus 265 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~ 299 (689)
T 3pvc_A 265 DDIAIIGGGIVSALTALALQRRGAVVTLYCADAQP 299 (689)
T ss_dssp SSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSST
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCcc
Confidence 57999999999999999986 9999999986543
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=87.19 E-value=0.63 Score=42.41 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=29.7
Q ss_pred ccEEEECC-CHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGG-GIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGg-G~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++|.|||+ |.-|.+.|..|.+. |++|+++++.+
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~--g~~V~~~~r~~ 45 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDS--AHHLAAIEIAP 45 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHS--SSEEEEECCSH
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCH
Confidence 58999999 99999999999997 88999998754
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=87.16 E-value=0.46 Score=45.93 Aligned_cols=34 Identities=18% Similarity=0.048 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+|+|||.|..|...|..|.+. |.+|++||.++.
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~--g~~vvvId~d~~ 38 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSS--GVKMVVLDHDPD 38 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT--TCCEEEEECCHH
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHH
Confidence 4799999999999999999998 899999999854
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=86.81 E-value=0.6 Score=46.09 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++|.|||.|..|+..|..|++. |++|+++|+++
T Consensus 9 ~~I~VIG~G~vG~~lA~~la~~--G~~V~~~d~~~ 41 (478)
T 2y0c_A 9 MNLTIIGSGSVGLVTGACLADI--GHDVFCLDVDQ 41 (478)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCH
T ss_pred ceEEEECcCHHHHHHHHHHHhC--CCEEEEEECCH
Confidence 6899999999999999999998 89999999874
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=86.74 E-value=0.55 Score=43.78 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=0.0
Q ss_pred hcCCeEEEEcCchhHHH-HHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCC
Q psy1545 133 KSAKKIVVIGNGGIATE-LVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKG 209 (454)
Q Consensus 133 ~~~~~vvVvG~G~~g~e-~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (454)
...+++.|||.|-+|+. +|..|. |.+|++. |........+.|.+
T Consensus 2 ~~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~-----------D~~~~~~~~~~L~~---------------------- 48 (326)
T 3eag_A 2 NAMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGC-----------DAKMYPPMSTQLEA---------------------- 48 (326)
T ss_dssp -CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEE-----------ESSCCTTHHHHHHH----------------------
T ss_pred CCCcEEEEEEECHHHHHHHHHHHHhCCCEEEEE-----------cCCCCcHHHHHHHh----------------------
Q ss_pred CCCCCccccccccccCccCCceEEEeCceEEEEE-cCCCCccceEEEecCCcEEecCEEEEeeccCcCccccc
Q psy1545 210 PSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIV-DSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQV 281 (454)
Q Consensus 210 ~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~-~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~ 281 (454)
.||+++.+.....+. .+- |.||.++|..|+.+ .+
T Consensus 49 -------------------~gi~v~~g~~~~~l~~~~~------------------d~vV~Spgi~~~~p-~~ 83 (326)
T 3eag_A 49 -------------------LGIDVYEGFDAAQLDEFKA------------------DVYVIGNVAKRGMD-VV 83 (326)
T ss_dssp -------------------TTCEEEESCCGGGGGSCCC------------------SEEEECTTCCTTCH-HH
T ss_pred -------------------CCCEEECCCCHHHcCCCCC------------------CEEEECCCcCCCCH-HH
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=86.69 E-value=0.66 Score=42.65 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+|.|||+|.-|...|..|++. |++|+++|+++
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~ 48 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAAT--GHTVVLVDQTE 48 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCH
Confidence 4699999999999999999998 89999999875
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=86.65 E-value=0.66 Score=42.89 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++|.|||+|..|.+.|..|.+.+...+|+++|+.+
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~ 36 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence 47999999999999999999882116899999864
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=86.62 E-value=0.72 Score=42.85 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=29.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++|+|||+|..|.+.|..|...+...+++++|..+
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~ 42 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 42 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 58999999999999999999872223899999864
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=86.59 E-value=0.66 Score=42.08 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=31.1
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++++|+|.|+|..|...+..|.+. |.+|+++++...
T Consensus 2 ~~~~ilVtGaG~iG~~l~~~L~~~--g~~V~~~~r~~~ 37 (286)
T 3gpi_A 2 SLSKILIAGCGDLGLELARRLTAQ--GHEVTGLRRSAQ 37 (286)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHT--TCCEEEEECTTS
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcc
Confidence 036899999999999999999998 889999988643
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.48 E-value=0.43 Score=41.65 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=29.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEE-ECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGL-VTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~l-ie~~~ 37 (454)
+++|.|||+|.-|.+.|..|.+. +.+|++ +++++
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~--g~~V~~v~~r~~ 57 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAA--QIPAIIANSRGP 57 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHT--TCCEEEECTTCG
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCCH
Confidence 36899999999999999999998 888888 77754
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=86.47 E-value=0.75 Score=42.22 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=29.9
Q ss_pred ccEEEEC-CCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIG-GGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIG-gG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+|.||| .|.-|.+.|..|++. |++|+++++++
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~--G~~V~~~~~~~ 55 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRAS--GYPISILDRED 55 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTT--TCCEEEECTTC
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC--CCeEEEEECCc
Confidence 4799999 999999999999998 88999998765
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=86.38 E-value=0.61 Score=44.18 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+|+|+|+|.+|..++..|+.. |.+|+++++.+
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~--Ga~V~v~dr~~ 200 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINV 200 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCH
Confidence 4699999999999999999998 77999998864
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=86.27 E-value=0.66 Score=43.03 Aligned_cols=33 Identities=27% Similarity=0.170 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCC--eEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGE--SIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~--~v~lie~~~ 37 (454)
++|.|||.|.-|.+.|..|++. |. +|+++|+++
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~--G~~~~V~~~dr~~ 68 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRS--GFKGKIYGYDINP 68 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHT--TCCSEEEEECSCH
T ss_pred CEEEEEeeCHHHHHHHHHHHhC--CCCCEEEEEECCH
Confidence 5799999999999999999998 66 899998865
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=86.20 E-value=0.39 Score=42.28 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=29.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+.+++|+|+|..|...|..|.+. +. |+++|+++.
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~--g~-v~vid~~~~ 42 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGS--EV-FVLAEDENV 42 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTS--EE-EEEESCGGG
T ss_pred CCEEEEECCChHHHHHHHHHHhC--Ce-EEEEECCHH
Confidence 35799999999999999999987 78 999998653
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=86.16 E-value=0.82 Score=41.22 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+++|||+|-+|.+++..|.+. |.+|++++|..
T Consensus 119 k~vlvlGaGGaaraia~~L~~~--G~~v~V~nRt~ 151 (269)
T 3phh_A 119 QNALILGAGGSAKALACELKKQ--GLQVSVLNRSS 151 (269)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSC
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 4699999999999999999998 68999998874
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=86.15 E-value=0.96 Score=44.86 Aligned_cols=75 Identities=17% Similarity=0.086 Sum_probs=50.9
Q ss_pred ccEEEECCCHHHHH-HHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEe
Q psy1545 3 FTYLIIGGGIAGVS-CVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~-aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~ 80 (454)
.+|.|||.|-+|++ +|..|.++ |.+|++.|.... ...+.+.. ++++..+. +
T Consensus 23 ~~v~viGiG~sG~s~~A~~l~~~--G~~V~~~D~~~~---------------------~~~~~l~~~gi~~~~g~----~ 75 (494)
T 4hv4_A 23 RHIHFVGIGGAGMGGIAEVLANE--GYQISGSDLAPN---------------------SVTQHLTALGAQIYFHH----R 75 (494)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHT--TCEEEEECSSCC---------------------HHHHHHHHTTCEEESSC----C
T ss_pred CEEEEEEEcHhhHHHHHHHHHhC--CCeEEEEECCCC---------------------HHHHHHHHCCCEEECCC----C
Confidence 47999999999997 68889998 999999987531 01223334 77766541 1
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCCCCCCCC
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASPRKIWYS 113 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~ 113 (454)
++. + . .+|.+|+++|-.+..|.+.
T Consensus 76 ~~~--~---~----~~d~vV~Spgi~~~~p~~~ 99 (494)
T 4hv4_A 76 PEN--V---L----DASVVVVSTAISADNPEIV 99 (494)
T ss_dssp GGG--G---T----TCSEEEECTTSCTTCHHHH
T ss_pred HHH--c---C----CCCEEEECCCCCCCCHHHH
Confidence 111 1 1 3799999999877665543
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=86.11 E-value=0.57 Score=48.41 Aligned_cols=34 Identities=18% Similarity=0.414 Sum_probs=30.4
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
.++++|||+|..|+.+|..|. |.+|+++++.+++
T Consensus 107 ~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~ 142 (662)
T 2z3y_A 107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV 142 (662)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 689999999999999999886 9999999987653
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=86.05 E-value=0.62 Score=36.84 Aligned_cols=31 Identities=32% Similarity=0.443 Sum_probs=26.7
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKD 165 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~ 165 (454)
..+++|+|+|.+|..+|..|. |.+|++++++
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 468999999999999999886 8899998764
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=85.96 E-value=0.6 Score=45.83 Aligned_cols=33 Identities=21% Similarity=0.156 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+|+|||||..|...+..|.+. |.+|++++++.
T Consensus 13 ~~vlVvGgG~va~~k~~~L~~~--ga~V~vi~~~~ 45 (457)
T 1pjq_A 13 RDCLIVGGGDVAERKARLLLEA--GARLTVNALTF 45 (457)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TBEEEEEESSC
T ss_pred CEEEEECCCHHHHHHHHHHHhC--cCEEEEEcCCC
Confidence 5799999999999999999998 89999999863
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=85.87 E-value=0.87 Score=42.25 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=29.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++|+|||+|..|.+.|..|...+...++.|+|..+
T Consensus 7 ~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~ 41 (317)
T 3d0o_A 7 NKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT 41 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 58999999999999999999873234899998753
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=85.73 E-value=0.56 Score=35.81 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=26.9
Q ss_pred CCeEEEEcCchhHHHHHHHhc--C-CcEEEEEeC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--N-VDIVWVVKD 165 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g-~~V~~i~~~ 165 (454)
.++++|+|+|.+|..++..|. | .+|+++.|+
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~ 38 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD 38 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence 578999999999999999886 7 788888764
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=85.72 E-value=0.65 Score=42.35 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++|.|||.|.-|...|..|++. |++|+++++++.
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~--G~~V~~~dr~~~ 35 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRA--GFDVTVWNRNPA 35 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHH--TCCEEEECSSGG
T ss_pred CeEEEEccCHHHHHHHHHHHHC--CCeEEEEcCCHH
Confidence 4799999999999999999998 899999988753
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=85.67 E-value=0.85 Score=38.74 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=31.5
Q ss_pred Cc-ccEEEECC-CHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 ME-FTYLIIGG-GIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~-~dvvIIGg-G~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
|. ++++|+|| |..|...+..|.+. |.+|+++++.+.
T Consensus 1 M~~~~ilVtGatG~iG~~l~~~l~~~--g~~V~~~~r~~~ 38 (206)
T 1hdo_A 1 MAVKKIAIFGATGQTGLTTLAQAVQA--GYEVTVLVRDSS 38 (206)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCGG
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHC--CCeEEEEEeChh
Confidence 53 67999999 99999999999998 899999988653
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=85.59 E-value=0.79 Score=41.99 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=28.7
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCC--eEEEECCCC
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGE--SIGLVTPSG 37 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~--~v~lie~~~ 37 (454)
+|.|||+|..|.+.|..|+.. +. +++|+|..+
T Consensus 2 kI~ViGaG~vG~~la~~l~~~--~~~~~v~L~D~~~ 35 (294)
T 1oju_A 2 KLGFVGAGRVGSTSAFTCLLN--LDVDEIALVDIAE 35 (294)
T ss_dssp EEEEECCSHHHHHHHHHHHHH--SCCSEEEEECSSH
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCCCeEEEEECCh
Confidence 699999999999999999988 55 899999865
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=85.55 E-value=0.6 Score=37.28 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=27.7
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKD 165 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~ 165 (454)
.++++|+|+|.+|..+|..|. |.+|++++++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 468999999999999999986 9999999764
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=85.55 E-value=0.82 Score=42.36 Aligned_cols=33 Identities=24% Similarity=0.185 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~ 37 (454)
.+|.|||+|..|.+.|..|+.. +. +++++|..+
T Consensus 9 ~kv~ViGaG~vG~~ia~~l~~~--g~~~v~l~D~~~ 42 (315)
T 3tl2_A 9 KKVSVIGAGFTGATTAFLLAQK--ELADVVLVDIPQ 42 (315)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCEEEEECCGG
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeccc
Confidence 4799999999999999999987 66 999999873
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=85.54 E-value=0.92 Score=42.54 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=29.7
Q ss_pred cccEEEECC-CHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGG-GIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGg-G~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
..+|+|||+ |..|.++|..+..++...+++++|...
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~ 44 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA 44 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 468999998 999999999999873335899999753
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=85.49 E-value=0.81 Score=40.63 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.++|.|||.|.-|.+.|..|++. |++|+++++++.
T Consensus 19 ~~kIgiIG~G~mG~alA~~L~~~--G~~V~~~~r~~~ 53 (245)
T 3dtt_A 19 GMKIAVLGTGTVGRTMAGALADL--GHEVTIGTRDPK 53 (245)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--CCEEEEEeCChh
Confidence 36799999999999999999998 889999988753
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=85.43 E-value=0.65 Score=49.28 Aligned_cols=34 Identities=18% Similarity=0.414 Sum_probs=30.0
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
.++|+|||+|+.|+.+|..|. |.+|+++++.+++
T Consensus 278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~ 313 (852)
T 2xag_A 278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV 313 (852)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcC
Confidence 468999999999999999986 9999999987654
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=85.35 E-value=0.66 Score=37.12 Aligned_cols=31 Identities=16% Similarity=0.379 Sum_probs=27.9
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKD 165 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~ 165 (454)
.++++|+|.|.+|..+|..|. |.+|++++++
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC
Confidence 468999999999999999996 9999999874
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=85.20 E-value=0.75 Score=45.26 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=32.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++|.|||.|..|...|..|++.++|++|+++|+++.
T Consensus 6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~ 41 (467)
T 2q3e_A 6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNES 41 (467)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence 589999999999999999999866789999998753
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=85.13 E-value=0.87 Score=42.25 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=28.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS 36 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~ 36 (454)
++|.|||+|.-|...|..|++. |.+|+++ +.
T Consensus 20 ~kI~IiGaGa~G~~~a~~L~~~--G~~V~l~-~~ 50 (318)
T 3hwr_A 20 MKVAIMGAGAVGCYYGGMLARA--GHEVILI-AR 50 (318)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT--TCEEEEE-CC
T ss_pred CcEEEECcCHHHHHHHHHHHHC--CCeEEEE-Ec
Confidence 5799999999999999999998 8899998 54
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=85.10 E-value=0.84 Score=42.39 Aligned_cols=32 Identities=25% Similarity=0.228 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCC--eEEEECCCC
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGE--SIGLVTPSG 37 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~--~v~lie~~~ 37 (454)
+|.|||+|..|.+.|..|++. +. +|+++|+.+
T Consensus 2 kI~VIGaG~~G~~la~~l~~~--g~~~~V~l~D~~~ 35 (319)
T 1a5z_A 2 KIGIVGLGRVGSSTAFALLMK--GFAREMVLIDVDK 35 (319)
T ss_dssp EEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSSH
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCCCeEEEEeCCh
Confidence 699999999999999999998 66 899999864
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=85.10 E-value=0.57 Score=45.71 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=38.4
Q ss_pred cCccCCceEEEeCceEEEEEc---------------CCCCccceEEEecCCcEE--ecCEEEEeeccCcC
Q psy1545 224 GSSRDTKITIEYSCEVERIVD---------------SEDDTCNAYVKLTNGHTH--ACDIVVSAIGVVPN 276 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~---------------~~~~~~~~~v~~~~g~~~--~~D~vi~a~G~~p~ 276 (454)
+.+++.|++++++++|+++.. .+ +....|.+++| ++ .+|.||+|+|....
T Consensus 189 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~--~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~ 255 (448)
T 3axb_A 189 RRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQE--ARASAAVLSDG-TRVEVGEKLVVAAGVWSN 255 (448)
T ss_dssp HHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSC--EEEEEEEETTS-CEEEEEEEEEECCGGGHH
T ss_pred HHHHhCCCEEEcCCeEEEEEecccccccccccccccCC--CceEEEEeCCC-EEeecCCEEEECCCcCHH
Confidence 444668999999999999986 33 22346777777 68 99999999997643
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=85.08 E-value=0.85 Score=39.58 Aligned_cols=33 Identities=18% Similarity=0.014 Sum_probs=29.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++|.|||+|..|...|..|.+. +++|+++++++
T Consensus 29 ~~I~iiG~G~~G~~la~~l~~~--g~~V~~~~r~~ 61 (215)
T 2vns_A 29 PKVGILGSGDFARSLATRLVGS--GFKVVVGSRNP 61 (215)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCEEEEESSH
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 5799999999999999999987 78899888753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 454 | ||||
| d1nhpa1 | 198 | c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter | 3e-10 | |
| d1m6ia1 | 213 | c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f | 8e-10 | |
| d1m6ia1 | 213 | c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f | 0.003 | |
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 3e-09 | |
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 0.001 | |
| d1q1ra1 | 185 | c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas | 5e-09 | |
| d1mo9a1 | 261 | c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop | 6e-08 | |
| d1m6ia2 | 137 | c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF | 9e-08 | |
| d1ebda1 | 223 | c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd | 3e-06 | |
| d1d5ta1 | 336 | c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di | 5e-06 | |
| d1q1ra2 | 133 | c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud | 1e-05 | |
| d3grsa1 | 221 | c.3.1.5 (A:18-165,A:291-363) Glutathione reductase | 4e-05 | |
| d1xhca2 | 122 | c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas | 1e-04 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 1e-04 | |
| d1xdia1 | 233 | c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd | 1e-04 | |
| d1ojta1 | 229 | c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh | 2e-04 | |
| d1fcda1 | 186 | c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf | 6e-04 | |
| d1fcda1 | 186 | c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf | 0.003 | |
| d1seza1 | 373 | c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox | 6e-04 | |
| d1v59a1 | 233 | c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd | 8e-04 | |
| d1b5qa1 | 347 | c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai | 0.001 | |
| d1ps9a2 | 162 | c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t | 0.001 | |
| d1d7ya2 | 121 | c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu | 0.001 | |
| d1xhca1 | 167 | c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite | 0.004 |
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 57.2 bits (136), Expect = 3e-10
Identities = 48/226 (21%), Positives = 78/226 (34%), Gaps = 39/226 (17%)
Query: 137 KIVVIGNGGIATELVHEL----SNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAK 192
K++V+G+ E V EL + +I W K IS FL G + + + N+ +
Sbjct: 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS--FLSAGMQLYLEGKVKDVNSVR 59
Query: 193 PETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNA 252
T K + + + E+ I E
Sbjct: 60 YMTGEKM---------------------------ESRGVNVFSNTEITAIQPKEHQVTVK 92
Query: 253 YVKLTNGHTHACDIVVSAIGVVPNS------NIQVHGTPFELAPDCGIGVNELMQTSISN 306
+ D ++ + G VP N EL P+ I +E M+TS +
Sbjct: 93 DLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPD 152
Query: 307 VYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEP 352
V+A GD ++ A + L T A+ G +A K + VK P
Sbjct: 153 VFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVKPFP 198
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.6 bits (135), Expect = 8e-10
Identities = 32/218 (14%), Positives = 64/218 (29%), Gaps = 16/218 (7%)
Query: 134 SAKKIVVIGNGGIATELVHEL----SNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTN 189
S ++IG G A + ++ V +D + P + ++
Sbjct: 3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL------PYMRPPLSKELWFSD 56
Query: 190 TAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDT 249
+ ++N P ++ + + + +V D
Sbjct: 57 DPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVV----QLDVR 112
Query: 250 CNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYA 309
N +++ G PN + G + G VN +Q N++
Sbjct: 113 DNMVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQARS-NIWV 171
Query: 310 AGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347
AGD +D+ ++ A G A + M GA
Sbjct: 172 AGDAAC-FYDIKLGRRRVEHHDHAVVSGRLAGENMTGA 208
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.003
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVT 34
+L+IGGG A + + PG + +V+
Sbjct: 4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVS 36
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 54.0 bits (128), Expect = 3e-09
Identities = 38/213 (17%), Positives = 66/213 (30%), Gaps = 38/213 (17%)
Query: 136 KKIVVIGNGGIATELVHELSNVDI-VWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPE 194
+VV+G G + V EL + + D + + +
Sbjct: 4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLD 63
Query: 195 TIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYV 254
+W V D V
Sbjct: 64 CKRAP-------------EVEWLLGVTAQ----------------------SFDPQAHTV 88
Query: 255 KLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFE--LAPDCGIGVNELMQTSISNVYAAGD 312
L++G T +V A G P + + LA D GI V+ +T+ +VYA GD
Sbjct: 89 ALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGD 148
Query: 313 VCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMV 345
V L+ ++ ++ W+ A++ G A+ +V
Sbjct: 149 VTRQRNPLSGRFERIETWSNAQNQGIAVARHLV 181
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 37.8 bits (86), Expect = 0.001
Identities = 25/166 (15%), Positives = 51/166 (30%), Gaps = 14/166 (8%)
Query: 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEET 60
++ +++G G+A VS V L I +V + + +
Sbjct: 2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIR 61
Query: 61 DANKFE-GLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIW---YSPHV 116
K + ++ T + DP+ + V + Y TL + TGA+PR +
Sbjct: 62 LDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARA 121
Query: 117 ITIRDTDSVAVLQEKLKS----------AKKIVVIGNGGIATELVH 152
+ D + V + ++ + E
Sbjct: 122 AGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWS 167
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 53.6 bits (127), Expect = 5e-09
Identities = 30/213 (14%), Positives = 53/213 (24%), Gaps = 30/213 (14%)
Query: 134 SAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKP 193
+ +V++G G E+ L ++
Sbjct: 2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVG-------------------------D 36
Query: 194 ETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAY 253
T+ + + I + +V I + D
Sbjct: 37 ATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQVTAI--NRDRQQVIL 94
Query: 254 VKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
+ ++PN + L D GI +NE MQTS + A GD
Sbjct: 95 SDGRALDYDRLVLATGGRPLIPNCELASAA---GLQVDNGIVINEHMQTSDPLIMAVGDC 151
Query: 314 CTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346
L +W ++ A A + G
Sbjct: 152 ARFHSQLYDRWVRIESVPNALEQARKIAAILCG 184
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 51.5 bits (122), Expect = 6e-08
Identities = 37/249 (14%), Positives = 74/249 (29%), Gaps = 30/249 (12%)
Query: 114 PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSN--VDIVWVVKDKHISAT 171
+ + + + E + IG G L + V + + +
Sbjct: 21 EILEAPDGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGS 80
Query: 172 FLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKI 231
++ A + + V+L + R+
Sbjct: 81 CPHNAC----VPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPH 136
Query: 232 TIEYSCEVERI-----VDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS-NIQVHGTP 285
I E++ ++ + + G ++ A+G P + ++
Sbjct: 137 GIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRS 196
Query: 286 FELAPDC--------GIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMG 337
ELA + VNE +QTS+ NVYA GD+ +A+ G
Sbjct: 197 AELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPM----------EMFKARKSG 246
Query: 338 TYAAKCMVG 346
YAA+ ++G
Sbjct: 247 CYAARNVMG 255
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (115), Expect = 9e-08
Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 50/166 (30%)
Query: 114 PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS------NVDIVWVVKDKH 167
R L++ + K I +IG G + +EL L +++ + +K
Sbjct: 16 SRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG 75
Query: 168 ISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSR 227
L + + + + +
Sbjct: 76 NMGKILPEYLSNWTMEKVRREG-------------------------------------- 97
Query: 228 DTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273
+ + + V+ + S +KL +G D +V+A+G+
Sbjct: 98 ---VKVMPNAIVQSVGVSSGKLL---IKLKDGRKVETDHIVAAVGL 137
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 46.0 bits (108), Expect = 3e-06
Identities = 29/220 (13%), Positives = 68/220 (30%), Gaps = 21/220 (9%)
Query: 138 IVVIGNGGIATELVHELSNVDI-VWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETI 196
+V+G G + + V +V+ ++ L+ G + +
Sbjct: 6 TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHS 65
Query: 197 FKRMRYNTGGEKGPSLGPDWHTQV--NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYV 254
+ + +W V L G + + +T
Sbjct: 66 EEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVN 125
Query: 255 KLTNGHTHACDIVVS-------AIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISN 306
+ + +++ +G PN+ + + ++ I V++ +TS+ N
Sbjct: 126 GDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPN 185
Query: 307 VYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346
++A GD+ L +A + G AA+ + G
Sbjct: 186 IFAIGDIVPG----------PALAHKASYEGKVAAEAIAG 215
|
| >d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.0 bits (107), Expect = 5e-06
Identities = 32/324 (9%), Positives = 70/324 (21%), Gaps = 21/324 (6%)
Query: 2 EFTYLIIGGGIAGVSCVEGLAFL-----------HPGESIGLVTPSGIVKAVTKTVPVTK 50
E+ +++G G+ ++ + G +TP + + +
Sbjct: 6 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPP 65
Query: 51 LLSDITVEETDANKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKI 110
+ + L + V + K +
Sbjct: 66 ETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFV-YKGGKIYKVPST 124
Query: 111 WYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISA 170
+ ++ L S D+
Sbjct: 125 ETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVI 184
Query: 171 TFLDPGAAEFFQDSINKTNTAKPETIFKR-----MRYNTGGEKGPSLGPDWHTQVNLHGS 225
F A + D + K RY P G Q
Sbjct: 185 DFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQ-GFARL 243
Query: 226 SRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTP 285
S T + V+ I + + G C ++ VP+ G+
Sbjct: 244 SAIYGGTYMLNKPVDDI---IMENGKVVGVKSEGEVARCKQLICDPSYVPDRVPIDDGSE 300
Query: 286 FELAPDCGIGVNELMQTSISNVYA 309
++ C +T+ +++
Sbjct: 301 SQVFCSCSYDATTHFETTCNDIKD 324
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 42.2 bits (98), Expect = 1e-05
Identities = 24/176 (13%), Positives = 50/176 (28%), Gaps = 43/176 (24%)
Query: 97 KTLCICTGASPRKIWYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSN 156
+ L + +GA + + + +R + ++ +L + ++VVIG G I E+
Sbjct: 1 RPLPVASGAVGK----ANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIK 56
Query: 157 VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDW 216
++ T+ P + +
Sbjct: 57 ANMHV---------------------------------TLLDTAARVLERVTAPPVSAFY 83
Query: 217 HTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIG 272
+ I +V S D V +G D+V++ IG
Sbjct: 84 EHLHREA------GVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (99), Expect = 4e-05
Identities = 29/225 (12%), Positives = 69/225 (30%), Gaps = 19/225 (8%)
Query: 138 IVVIGNGGIATELVHELSNVDI-VWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETI 196
+VIG G + + VV+ + T ++ G ++
Sbjct: 6 YLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDH 65
Query: 197 FKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL 256
+ G+ + + ++ + E+ R + +++
Sbjct: 66 ADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEV 125
Query: 257 TNGHTHACDIVVS-------AIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVY 308
+ A I+++ VPN+ ++ ++ + I V+E T++ +Y
Sbjct: 126 SGKKYTAPHILIATGGMPSTPHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIY 185
Query: 309 AAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPV 353
A GDVC + A G A + ++ +
Sbjct: 186 AVGDVCGKALLTPV----------AIAAGRKLAHRLFEYKEDSKL 220
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 39.7 bits (92), Expect = 1e-04
Identities = 22/160 (13%), Positives = 49/160 (30%), Gaps = 49/160 (30%)
Query: 115 HVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLD 174
+++T+R ++E ++++ + ++IG G I EL L+ + + LD
Sbjct: 12 YLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLD 71
Query: 175 PGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIE 234
+ +D + +T +
Sbjct: 72 EELSNMIKDML-----------------------------------------EETGVKFF 90
Query: 235 YSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVV 274
+ E+ + LTN + + AIG+V
Sbjct: 91 LNSELLEANEE--------GVLTNSGFIEGKVKICAIGIV 122
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 41.0 bits (95), Expect = 1e-04
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 269 SAIGVVPN-SNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQM 327
G P S + + E I VNE T++S VYA GDV
Sbjct: 147 DVKGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPM--------- 197
Query: 328 RLWTQAKHMGTYAAKCMVG 346
L +A+ G + + G
Sbjct: 198 -LAHKAEEDGVACVEYLAG 215
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 41.2 bits (95), Expect = 1e-04
Identities = 20/131 (15%), Positives = 41/131 (31%), Gaps = 10/131 (7%)
Query: 216 WHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275
+ G T + + ++ T + T A ++ + V
Sbjct: 106 SMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGSVPN 165
Query: 276 NSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKH 335
S + + +L + V+ + +T + +YAAGD + L + A
Sbjct: 166 TSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGL----------LPLASVAAM 215
Query: 336 MGTYAAKCMVG 346
G A +G
Sbjct: 216 QGRIAMYHALG 226
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 260 HTHACDIVVSAIGVVPNSNIQVH-GTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSW 318
+ +++A PN + + I V++ M+T++ ++YA GD+
Sbjct: 146 IVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM 205
Query: 319 DLAKQWFQMRLWTQAKHMGTYAAKCMVG 346
L +A H G AA+ G
Sbjct: 206 ----------LAHKAVHEGHVAAENCAG 223
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Score = 38.6 bits (88), Expect = 6e-04
Identities = 29/218 (13%), Positives = 59/218 (27%), Gaps = 33/218 (15%)
Query: 134 SAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKP 193
+ +K+VV+G G + D I T ++P + N+
Sbjct: 1 AGRKVVVVGGGTGGATAAKYIKL-------ADPSIEVTLIEPNTDYYTCYLSNEVIGGDR 53
Query: 194 ETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAY 253
+ + Y+ G + D T ++ T E+ +
Sbjct: 54 KLESIKHGYDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYD--------------R 99
Query: 254 VKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
+ G D + G + + + C + + + ++ GD
Sbjct: 100 CVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGW-----CPVDIKTFESSIHKGIHVIGDA 154
Query: 314 CTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351
+ A G AA +V +K E
Sbjct: 155 SI-------ANPMPKSGYSANSQGKVAAAAVVVLLKGE 185
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Score = 36.3 bits (82), Expect = 0.003
Identities = 17/115 (14%), Positives = 33/115 (28%), Gaps = 1/115 (0%)
Query: 6 LIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG-IVKAVTKTVPVTKLLSDITVEETDANK 64
+++GGG G + + + P + L+ P+ + +++
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGL 65
Query: 65 FEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSPHVITI 119
V+ D+ IDP V T Y + G I
Sbjct: 66 RAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKI 120
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 39.4 bits (90), Expect = 6e-04
Identities = 16/112 (14%), Positives = 33/112 (29%), Gaps = 14/112 (12%)
Query: 216 WHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIG--V 273
+ L +SR +++ E +A + D V+
Sbjct: 240 DLREDELRLNSRVLELSCS---CTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCD 296
Query: 274 VPNSNIQVHGTPF---------ELAPDCGIGVNELMQTSISNVYAAGDVCTP 316
V + I G PF D + + M+ ++ ++ AG+
Sbjct: 297 VKSMKIAKRGNPFLLNFIPEVYGHNYDSVLDAIDKMEKNLPGLFYAGNHRGG 348
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (89), Expect = 8e-04
Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 2/87 (2%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYV-KLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFE 287
E V + E ++ + N V +G P + E
Sbjct: 119 SFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFVGRRPYIAGLGAEKIGLE 178
Query: 288 LAPDCGIGVNELMQTSISNVYAAGDVC 314
+ + +++ + ++ GDV
Sbjct: 179 VDKRGRLVIDDQFNSKFPHIKVVGDVT 205
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Score = 38.8 bits (88), Expect = 0.001
Identities = 44/364 (12%), Positives = 105/364 (28%), Gaps = 40/364 (10%)
Query: 6 LIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKF 65
+++G G++G+S + L+ + ++ + +
Sbjct: 4 IVVGAGMSGISAAKRLS-EAGITDLLILEATDHIGGRMHKTNF------------AGINV 50
Query: 66 EGLCTVIVDT----VAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSPHVITIRD 121
E + + I P VN + + R + L ++ +V +
Sbjct: 51 ELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIE 110
Query: 122 T-DSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEF 180
DSV + EKL + + I + D + D AE
Sbjct: 111 LADSVEEMGEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEP 170
Query: 181 F-QDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEV 239
S+ T + F Y ++G + L + KI
Sbjct: 171 PRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLN 230
Query: 240 ERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNEL 299
+ + + + VK + ++ D V+ + + + + P +L + +
Sbjct: 231 KVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKP-KLPTWKVRAIYQF 289
Query: 300 ------------MQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347
++ + VY G+ + ++ A G +A+ ++
Sbjct: 290 WPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHG--------AYLSGIDSAEILINC 341
Query: 348 VKNE 351
+ +
Sbjct: 342 AQKK 345
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 37.2 bits (85), Expect = 0.001
Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 23/165 (13%)
Query: 114 PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHEL------SNVDIVWVVKDKH 167
P V++ D VL++K K+ +IG GGI + L ++ +I +
Sbjct: 13 PKVLSYLD-----VLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWG 67
Query: 168 ISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSR 227
I ++ G + +++ P G T +
Sbjct: 68 IDSSLQQAGGLS--------PQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLL 119
Query: 228 DTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIG 272
+ + ++I DD V A D VV G
Sbjct: 120 SRGVKMIPGVSYQKI----DDDGLHVVINGETQVLAVDNVVICAG 160
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 36.2 bits (83), Expect = 0.001
Identities = 23/158 (14%), Positives = 42/158 (26%), Gaps = 46/158 (29%)
Query: 115 HVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLD 174
V T+R + +Q L+ +++++G G I EL + + +
Sbjct: 10 PVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVET-------- 61
Query: 175 PGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIE 234
+ S + + +
Sbjct: 62 -------------------------------QPRLMSRAAPATLADFVARYHAAQGVDLR 90
Query: 235 YSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIG 272
+ V VD V L +G A D+VV IG
Sbjct: 91 FERSVTGSVDGV-------VLLDDGTRIAADMVVVGIG 121
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 35.9 bits (81), Expect = 0.004
Identities = 34/210 (16%), Positives = 57/210 (27%), Gaps = 45/210 (21%)
Query: 137 KIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETI 196
K+V++GNG EL +LS V V+ DK + P + +
Sbjct: 2 KVVIVGNGPGGFELAKQLSQTYEVTVI-DKEPVPYYSKPMLSHYI--------------- 45
Query: 197 FKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL 256
+ E+ +++ V +
Sbjct: 46 -------------------AGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVI 86
Query: 257 TNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTP 316
T D +V A G + G + GI +++ +TS +VYA GD
Sbjct: 87 TEKGEVPYDTLVLATGAPNVDLARRSG----IHTGRGILIDDNFRTSAKDVYAIGDCA-- 140
Query: 317 SWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346
A A + G
Sbjct: 141 ----EYSGIIAGTAKAAMEQARVLADILKG 166
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 454 | |||
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.9 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.88 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.88 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.86 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.86 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.86 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.85 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.84 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 99.83 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.83 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.81 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.8 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.77 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.77 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.77 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.75 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.74 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.74 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.73 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.73 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.71 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.71 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.69 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.68 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.67 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.67 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.65 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.64 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.64 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.63 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.63 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.62 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.59 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.59 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.58 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.57 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.57 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.57 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.55 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.52 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.48 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.45 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 99.43 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.43 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.39 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.37 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.34 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.31 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 99.21 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 99.2 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 99.19 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.18 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 99.16 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 99.15 | |
| d1v59a3 | 123 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.15 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 99.14 | |
| d3lada3 | 124 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.12 | |
| d1dxla3 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.12 | |
| d1ebda3 | 115 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.12 | |
| d1lvla3 | 123 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.12 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.11 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.1 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.09 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 99.09 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.08 | |
| d1ojta3 | 128 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.08 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.08 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 99.08 | |
| d1xdia2 | 118 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 99.07 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 99.06 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.05 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 99.04 | |
| d1nhpa3 | 126 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.04 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 99.04 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 99.04 | |
| d1feca3 | 128 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.02 | |
| d3grsa3 | 115 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.02 | |
| d1mo9a3 | 140 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.01 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 99.0 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.99 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 98.98 | |
| d1gesa3 | 115 | Glutathione reductase {Escherichia coli [TaxId: 56 | 98.97 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 98.97 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.97 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 98.97 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.96 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.94 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 98.94 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.93 | |
| d1onfa3 | 119 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.92 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.89 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 98.89 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.88 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.87 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.86 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 98.85 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.85 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.82 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.81 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.76 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 98.74 | |
| d1h6va3 | 133 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.73 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.71 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.69 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.69 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.69 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.68 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.66 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.65 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.63 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.63 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.62 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.61 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 98.6 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 98.59 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.58 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.58 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.57 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.49 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 98.48 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.47 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.47 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.43 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.38 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.36 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 98.36 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 98.35 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 98.22 | |
| d1d7ya3 | 97 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.18 | |
| d1q1ra3 | 103 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.18 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 98.15 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.15 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.12 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 98.11 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 98.05 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 98.02 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 97.97 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 97.93 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 97.92 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 97.88 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 97.79 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 97.76 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 97.75 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 97.75 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.66 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 97.62 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 97.59 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 97.56 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 97.46 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 97.36 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 97.35 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 97.31 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 97.25 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 97.23 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 97.17 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 97.12 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 97.12 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 97.07 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 97.02 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 96.96 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 96.95 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 96.91 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 96.84 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 96.78 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 96.77 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 96.43 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 96.39 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 96.34 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 96.33 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.04 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.98 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 95.81 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.81 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 95.8 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 95.78 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 95.76 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 95.7 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 95.68 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.62 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 95.59 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 95.56 | |
| d1xhca3 | 62 | NADH oxidase /nitrite reductase {Pyrococcus furios | 95.46 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 95.26 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.22 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.16 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 95.13 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.95 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 94.92 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 94.81 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 94.74 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 94.64 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 94.51 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 94.48 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 94.37 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.32 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 93.93 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 93.89 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 93.85 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 93.7 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 93.58 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 93.13 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 93.05 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 92.92 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 92.9 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 92.9 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 92.79 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 92.48 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 92.43 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 92.42 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 92.42 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 92.42 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 92.2 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 92.17 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 92.15 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 92.15 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 92.09 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 92.05 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 92.04 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 92.0 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 91.98 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 91.82 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 91.8 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 91.79 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 91.48 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 91.4 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 91.35 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 91.3 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 91.29 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 91.23 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 91.07 | |
| d1vg0a1 | 491 | Rab escort protein 1 {Rat (Rattus norvegicus) [Tax | 91.06 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 90.7 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 90.64 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 90.59 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 90.52 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 90.31 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 90.3 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 90.28 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 89.7 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 89.51 | |
| d1fcda2 | 141 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 89.43 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 89.42 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 89.39 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 89.34 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 89.32 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 89.28 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 89.24 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 89.05 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 88.97 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 88.69 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 88.66 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 88.55 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 88.5 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 88.28 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 88.08 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 87.93 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 87.89 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 87.12 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 87.08 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 86.94 | |
| d1fcda2 | 141 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 86.89 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 86.58 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 86.58 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 86.57 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 86.57 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 86.38 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 86.23 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 86.15 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 85.73 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 85.65 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 85.59 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 85.56 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 85.53 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 85.46 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 85.35 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 84.95 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 84.53 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 84.27 | |
| d1m6ia3 | 131 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 83.91 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 83.53 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 83.1 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 83.04 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 82.98 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 82.86 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 82.79 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 82.54 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 82.53 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 82.39 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 82.31 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 82.27 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 82.06 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 81.38 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 81.2 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 81.15 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 80.85 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 80.84 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 80.79 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 80.64 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 80.3 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 80.23 |
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.90 E-value=8.4e-24 Score=183.20 Aligned_cols=173 Identities=21% Similarity=0.280 Sum_probs=128.6
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (454)
..+|+|||||++|+|+|..|+ |.+++++.++++....+..+.+...+......
T Consensus 3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~------------------------- 57 (183)
T d1d7ya1 3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDA------------------------- 57 (183)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCG-------------------------
T ss_pred CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhh-------------------------
Confidence 356999999999999999996 88888887776665543334333333332211
Q ss_pred CCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCC-----CCce
Q psy1545 213 GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHG-----TPFE 287 (454)
Q Consensus 213 ~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~-----~~l~ 287 (454)
...........+|+++.+..++++.... ..+.+++|+++++|.+++|+|..|+.. ++.. .++.
T Consensus 58 ------~~~~~~~~~~~~i~~~~~~~v~~i~~~~-----~~~~~~~g~~~~~D~vi~a~G~~p~~~-~~~~~~~~~~gl~ 125 (183)
T d1d7ya1 58 ------EKIRLDCKRAPEVEWLLGVTAQSFDPQA-----HTVALSDGRTLPYGTLVLATGAAPRAV-LANDALARAAGLA 125 (183)
T ss_dssp ------GGSBCCGGGSTTCEEEETCCEEEEETTT-----TEEEETTSCEEECSEEEECCCEEECCE-EECCHHHHHTTCC
T ss_pred ------hhHHHHHhhcCCeEEEEecccccccccc-----ceeEecCCcEeeeeeEEEEEEEEcccc-cccccccceeeEe
Confidence 0000112245799999999999998765 357889999999999999999999875 4332 2344
Q ss_pred ecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 288 LAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 288 ~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
.+++|.||+++||+.|+|||+|||+..+....+.....++|..|..||+.||+||++
T Consensus 126 --~~~~I~vd~~~~ts~~~IyA~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~nil~ 182 (183)
T d1d7ya1 126 --CDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVD 182 (183)
T ss_dssp --BSSSEECCTTCBCSSTTEEECGGGEEEECTTTCSEEECCCHHHHHHHHHHHHHHHHC
T ss_pred --eCCcEEeccceeccccccchhhhhhccceeeCCceechhHHHHHHHHHHHHHHHHcC
Confidence 356799999999999999999999987654444444457899999999999999985
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.88 E-value=1.1e-22 Score=181.67 Aligned_cols=67 Identities=25% Similarity=0.419 Sum_probs=56.3
Q ss_pred eccCcCcc-cccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 271 IGVVPNSN-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 271 ~G~~p~~~-~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
+|++|+++ +.++..|++++++|+|.||+++|||+|+|||+|||+..+ .+.+.|..||+.||++|+++
T Consensus 149 ~G~~p~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~----------~~~~~A~~~g~~aa~~i~g~ 216 (223)
T d1ebda1 149 VGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGP----------ALAHKASYEGKVAAEAIAGH 216 (223)
T ss_dssp SCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTSC
T ss_pred ccceecCCCCChHhcCceECCCCCEeECCCCCCCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHHcCC
Confidence 35556666 124567889999999999999999999999999998753 57889999999999999975
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.88 E-value=2.9e-22 Score=175.67 Aligned_cols=178 Identities=26% Similarity=0.396 Sum_probs=125.5
Q ss_pred eEEEEcCchhHHHHHHHhc----CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCC
Q psy1545 137 KIVVIGNGGIATELVHELS----NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (454)
||+|||||++|+|+|..|+ +.+|++++|++.+. +.+..+...+...+.+ .
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~--~~~~~~~~~l~~~~~~-----~------------------- 55 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS--FLSAGMQLYLEGKVKD-----V------------------- 55 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS--BCGGGHHHHHTTSSCC-----G-------------------
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccc--ccccCcchhhcccccc-----h-------------------
Confidence 7999999999999999985 66899999877552 1222222221111100 0
Q ss_pred CCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEE-ecCC--cEEecCEEEEeeccCcC--------ccccc
Q psy1545 213 GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVK-LTNG--HTHACDIVVSAIGVVPN--------SNIQV 281 (454)
Q Consensus 213 ~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~-~~~g--~~~~~D~vi~a~G~~p~--------~~~~~ 281 (454)
.++. ....+.++++||++++++.|++++.+++ .+.+. ..+| .++++|.+++|+|..|+ .. ++
T Consensus 56 -~~~~--~~~~~~l~~~gi~v~~~~~V~~i~~~~~---~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~-~~ 128 (198)
T d1nhpa1 56 -NSVR--YMTGEKMESRGVNVFSNTEITAIQPKEH---QVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTA-WL 128 (198)
T ss_dssp -GGSB--SCCHHHHHHTTCEEEETEEEEEEETTTT---EEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCG-GG
T ss_pred -HHHH--HhhHHHHHHCCcEEEEeeceeeEeeccc---cceeeecccccccccccceeeEeecceeecccccccccc-cc
Confidence 0000 0012234568999999999999998763 34444 3444 45889999999988764 33 34
Q ss_pred CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 282 HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 282 ~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
+. ++.++++|+|.||+++||+.|+|||+|||+..+....+.....+++..|.+||+.||+||.+..
T Consensus 129 ~~-~~~~~~~G~i~vd~~~~T~~~~IyA~GD~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~ 194 (198)
T d1nhpa1 129 KG-TLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPV 194 (198)
T ss_dssp TT-TSCBCTTSCBCCCTTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred cc-cceeccCCceecCCcccccccceEEecceeecccccCCCcccccHHHHHHHHHHHHHHhhCCCC
Confidence 33 4677889999999999999999999999998755444444556789999999999999998753
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.86 E-value=7.5e-22 Score=168.06 Aligned_cols=165 Identities=22% Similarity=0.212 Sum_probs=120.2
Q ss_pred CeEEEEcCchhHHHHHHHhc-CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS-NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGP 214 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~-g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 214 (454)
.|++|||||++|+|+|..|+ +.+||++++.+... +.++.+...+...+.+ .
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~~~~Vtvv~~~~~~~--~~~~~~~~~~~~~~~~--------------------------~ 52 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQTYEVTVIDKEPVPY--YSKPMLSHYIAGFIPR--------------------------N 52 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTTTSEEEEECSSSSCC--CCSTTHHHHHTTSSCG--------------------------G
T ss_pred CeEEEECCcHHHHHHHHHHHcCCCEEEEecccccc--ccccchhhhhhhhhhh--------------------------h
Confidence 38999999999999999998 88999999876432 1233222222111100 0
Q ss_pred ccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCce
Q psy1545 215 DWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGI 294 (454)
Q Consensus 215 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i 294 (454)
.+ .....+.+++.++++++++.++++..... +.+.++.++++|.+++|+|..|+. ++...+++. ++.|
T Consensus 53 ~~--~~~~~~~~~~~~v~~~~~~~v~~i~~~~~------~~~~~~~~i~~D~li~a~G~~~~~--~~~~~gl~~--~~~i 120 (167)
T d1xhca1 53 RL--FPYSLDWYRKRGIEIRLAEEAKLIDRGRK------VVITEKGEVPYDTLVLATGAPNVD--LARRSGIHT--GRGI 120 (167)
T ss_dssp GG--CSSCHHHHHHHTEEEECSCCEEEEETTTT------EEEESSCEEECSEEEECCCEECCH--HHHHTTCCB--SSSE
T ss_pred hh--hHHHHHHHHhccceeeeeccccccccccc------cccccccccccceeEEEEEecCCc--hhhhcCcee--CCce
Confidence 00 00011223558999999999999976542 556677789999999999998754 667777776 3459
Q ss_pred EeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 295 GVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 295 ~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
.||+++||+.|+|||+|||+..+.. .++.++.|++||+.+|+||++
T Consensus 121 ~v~~~~~t~~~~i~aiGD~~~~~~~------~~~~~~~a~~~a~~~a~~i~G 166 (167)
T d1xhca1 121 LIDDNFRTSAKDVYAIGDCAEYSGI------IAGTAKAAMEQARVLADILKG 166 (167)
T ss_dssp ECCTTSBCSSTTEEECGGGEEBTTB------CCCSHHHHHHHHHHHHHHHTT
T ss_pred eeccccEecCCCeEEeeecccCCCe------EEChHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999875422 246788999999999999987
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=7.1e-22 Score=174.87 Aligned_cols=199 Identities=18% Similarity=0.188 Sum_probs=128.7
Q ss_pred CeEEEEcCchhHHHHHHHhc----CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS----NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPS 211 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (454)
.+++|||||+.|+++|..|+ ..+|+++.+.+.+. +..+.+...+.... ... .............+....
T Consensus 5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~p--y~r~~Ls~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~ 77 (213)
T d1m6ia1 5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP--YMRPPLSKELWFSD----DPN-VTKTLRFKQWNGKERSIY 77 (213)
T ss_dssp EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC--BCSGGGGTGGGCC------CT-HHHHCEEECTTSCEEESB
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCC--ccccccceeccccc----Cch-hhhhhhhhhcccchhhhh
Confidence 56899999999999999986 45799998755431 11111111110000 000 000000000000000000
Q ss_pred C-CCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceec-
Q psy1545 212 L-GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELA- 289 (454)
Q Consensus 212 l-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~- 289 (454)
+ .+++.........+++.||+++++++|++++.++ ..|.++||+++++|.+|+|+|..|+...+....+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~-----~~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~ 152 (213)
T d1m6ia1 78 FQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRD-----NMVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDS 152 (213)
T ss_dssp SSCGGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGG-----TEEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCT
T ss_pred cCChhhhhhhhhHHHHHHCCeEEEeCCEEEEeeccC-----ceeeeccceeeccceEEEeeeeecchhhhhhccchhhhh
Confidence 0 0111111112334477899999999999998765 36889999999999999999977655325566677773
Q ss_pred CCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 290 PDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 290 ~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
..|+|.||++|||+ |+|||+|||+..+....+.+ .+++|+.|..||++||+||++..
T Consensus 153 ~~~~i~vd~~l~~~-~~VyA~GD~a~~~~~~~g~~-~i~~~~~A~~~gr~aa~ni~g~~ 209 (213)
T d1m6ia1 153 DFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR-RVEHHDHAVVSGRLAGENMTGAA 209 (213)
T ss_dssp TTCSEECCTTCEEE-TTEEECGGGEEEEETTTEEE-CCCCHHHHHHHHHHHHHHHTSCC
T ss_pred hhhhhhhhHhcCcC-CceEEeeeeeeeccccCCcE-EeeEhHHHHHHHHHHHHHhcCCC
Confidence 45889999999998 99999999998765544433 46789999999999999999863
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.86 E-value=4.5e-22 Score=172.36 Aligned_cols=179 Identities=19% Similarity=0.191 Sum_probs=126.7
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (454)
.++|+|||||++|+|+|..|. +.+++++.+.+..........+...+ . . ..
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~---~-~-----------------------~~ 55 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAY---L-A-----------------------GK 55 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTT---T-T-----------------------TC
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHH---H-H-----------------------hh
Confidence 689999999999999999997 88998888776543321111111100 0 0 00
Q ss_pred CCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc--cccCCCCceecC
Q psy1545 213 GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN--IQVHGTPFELAP 290 (454)
Q Consensus 213 ~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~--~~~~~~~l~~~~ 290 (454)
.................++.+..+..+..+.... ..+...++.++++|.+++++|.+|+.+ .+++..++. .
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~--~ 128 (185)
T d1q1ra1 56 ATAESLYLRTPDAYAAQNIQLLGGTQVTAINRDR-----QQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQ--V 128 (185)
T ss_dssp SCSGGGBSSCHHHHHHTTEEEECSCCEEEEETTT-----TEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCC--B
T ss_pred hhhhhhhhhhhhhhcccceeeeccceeeeecccc-----cEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCcc--c
Confidence 0000000001111244678888888888887654 357788889999999999999988654 133444444 3
Q ss_pred CCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 291 DCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 291 ~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
+|++.||++|||+.|+|||+|||+..+....+.+..+++|+.|.+||+.||+||+++
T Consensus 129 ~~~i~Vd~~~~ts~~~vya~GD~~~~~~~~~~~~~~~~~a~~A~~~g~~aa~~i~G~ 185 (185)
T d1q1ra1 129 DNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGK 185 (185)
T ss_dssp SSSEECCTTSBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred cCccccCCccccchhhhhcchhhhccccccCCcccchhhHHHHHHHHHHHHHHccCC
Confidence 688999999999999999999999987666666666789999999999999999874
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.5e-21 Score=174.04 Aligned_cols=57 Identities=25% Similarity=0.288 Sum_probs=49.8
Q ss_pred CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 282 HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 282 ~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
+..|++++++|+|.||+++|||+|+|||+|||++.+ .+.+.|..+|+.||++|.+..
T Consensus 159 ~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~----------~l~~~A~~~G~~aa~~~~~~~ 215 (221)
T d3grsa1 159 NKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKA----------LLTPVAIAAGRKLAHRLFEYK 215 (221)
T ss_dssp GGTTCCBCTTSCBCCCTTCBCSSTTEEECGGGGTSS----------CCHHHHHHHHHHHHHHHHSCC
T ss_pred hhcCcEECCCccEEeCCCccccCCcEEEEEEccCCc----------CcHHHHHHHHHHHHHHHcCCC
Confidence 344677888999999999999999999999998743 578889999999999999854
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.84 E-value=5.2e-21 Score=170.51 Aligned_cols=81 Identities=26% Similarity=0.302 Sum_probs=69.2
Q ss_pred CCcEEecCEEEEeec-----cCcCcc-cccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChH
Q psy1545 258 NGHTHACDIVVSAIG-----VVPNSN-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWT 331 (454)
Q Consensus 258 ~g~~~~~D~vi~a~G-----~~p~~~-~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~ 331 (454)
+...+.+|.||+||| +.|+++ ..++..|++++++|+|.||+++||++|+|||+|||+..+ .+.+
T Consensus 131 ~~~~~~a~~VIiATGs~~~gr~p~~~~l~l~~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~~g~----------~l~~ 200 (221)
T d1dxla1 131 ENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP----------MLAH 200 (221)
T ss_dssp CCEEEECSEEEECCCEEECCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSC----------CCHH
T ss_pred cccccccceEEEeECCCccCccccCCCCChHhcCceEcCCCcEEeCCCcccCCCCEEEEeccCCCc----------ccHH
Confidence 346789999999998 567776 224667899999999999999999999999999998754 5788
Q ss_pred HHHHHHHHHHhhhcCCC
Q psy1545 332 QAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 332 ~A~~~g~~aa~~i~~~~ 348 (454)
.|..+|+.||++|+++.
T Consensus 201 ~A~~~g~~aa~~i~g~~ 217 (221)
T d1dxla1 201 KAEEDGVACVEYLAGKV 217 (221)
T ss_dssp HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999998753
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.83 E-value=1.8e-20 Score=168.39 Aligned_cols=109 Identities=18% Similarity=0.181 Sum_probs=79.4
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEEEeeccCcCcc----------cccCCCCceecCCCceEe
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPNSN----------IQVHGTPFELAPDCGIGV 296 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi~a~G~~p~~~----------~~~~~~~l~~~~~g~i~v 296 (454)
.||+++.+.....-.........+.+...+| .++++|.+++|+|.+|... ..++..+++++++|+|.|
T Consensus 107 ~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~l~~~gv~~~~~G~I~v 186 (233)
T d1xdia1 107 MGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQLGRGNYLTV 186 (233)
T ss_dssp TTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGCEEECCSSSCTTTTTCCCBTTTBCCC
T ss_pred cceeEEECcccccccccccccceEEEEecCCceeeeecceeeeecCcccccccccccccccccccchhhhcccCCCcCCc
Confidence 6777776632211111111012344555566 4799999999999998642 123455788899999999
Q ss_pred ccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 297 NELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 297 d~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
|++|||+.|+|||+|||++.+ ++.+.|..+|++||.||++.
T Consensus 187 d~~~~T~~~gIyA~GDv~~~~----------~l~~~A~~~g~~aa~~~~g~ 227 (233)
T d1xdia1 187 DRVSRTLATGIYAAGDCTGLL----------PLASVAAMQGRIAMYHALGE 227 (233)
T ss_dssp CSSSBCSSTTEEECSGGGTSC----------SCHHHHHHHHHHHHHHHTTC
T ss_pred CCCcccCCCCEEEEEEeCCCc----------hhHHHHHHHHHHHHHHHcCC
Confidence 999999999999999998743 67889999999999999974
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.83 E-value=1.5e-20 Score=169.16 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=72.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc---------cccccccccc---------------------c
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK---------AVTKTVPVTK---------------------L 51 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~---------~~~~~~~~~~---------------------~ 51 (454)
.|||+||||||||++||..+++. |++|+|||+.+..+ .|.+....+. .
T Consensus 3 dYDviVIG~GpaGl~aA~~aa~~--G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~ 80 (235)
T d1h6va1 3 DFDLIIIGGGSGGLAAAKEAAKF--DKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWK 80 (235)
T ss_dssp SEEEEEECCSHHHHHHHHHHGGG--CCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBC
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccc
Confidence 58999999999999999999999 99999999765421 1211111000 0
Q ss_pred c---cccchh---h----------h-HHHHHhc-CcEEEcceEEEEeCcccEEEeccCc--EEEecEEEEecCCCCCCCC
Q psy1545 52 L---SDITVE---E----------T-DANKFEG-LCTVIVDTVAAIDPRVNCVITEKQN--RIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 52 ~---~~~~~~---~----------~-~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lviAtG~~p~~~~ 111 (454)
. ...++. . . ....+.. +|+++.++..+.+.....+....+. .+.++.+++++|++|+.++
T Consensus 81 ~~~~~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~~~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~ 160 (235)
T d1h6va1 81 LEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLG 160 (235)
T ss_dssp CCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCS
T ss_pred cccceeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeeccccceecccccccccccccccceeecCCCceeEE
Confidence 0 001110 0 0 1112233 8999999999998887777665554 5889999999999886643
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.81 E-value=7.6e-20 Score=162.80 Aligned_cols=105 Identities=21% Similarity=0.275 Sum_probs=71.9
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc------------------------cc--c
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL------------------------LS--D 54 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~------------------------~~--~ 54 (454)
|++|+|||||||||++||..++++ |.+|+|||++...+.|.++.+.+.. .. .
T Consensus 4 ~~~DlvVIG~GpaGl~aA~~aa~~--G~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (220)
T d1lvla1 4 IQTTLLIIGGGPGGYVAAIRAGQL--GIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPR 81 (220)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHH--TCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCC
T ss_pred cccCEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccce
Confidence 579999999999999999999999 9999999998776554443211100 00 0
Q ss_pred cchh------h-------hHHHH-Hhc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCC
Q psy1545 55 ITVE------E-------TDANK-FEG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 55 ~~~~------~-------~~~~~-~~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
..+. . ..... +.. +++++.++..+.+... +.. ++..+.+|+++||||++|..+
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~~~--~~~-~~~~i~a~~viiAtG~~p~~l 149 (220)
T d1lvla1 82 LDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQ--VEV-DGQRIQCEHLLLATGSSSVEL 149 (220)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTE--EEE-TTEEEECSEEEECCCEEECCB
T ss_pred ehHHHHhhhheeEEeeeccchhhhhccCceEEEEeeecccCccc--ccc-cceeEeeceeeEcCCCCcccc
Confidence 0000 0 01111 122 7888888888887653 333 567899999999999988654
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.80 E-value=1.7e-19 Score=143.52 Aligned_cols=111 Identities=23% Similarity=0.350 Sum_probs=101.9
Q ss_pred CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCC
Q psy1545 114 PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTA 191 (454)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~ 191 (454)
.+++.+++.+|+.++++.+.++++++|||||++|+|+|..|+ |.+||+++++++++++.+++++++.+.+.+++
T Consensus 9 ~~v~~lrtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~---- 84 (121)
T d1d7ya2 9 MPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAA---- 84 (121)
T ss_dssp SCEEECCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHT----
T ss_pred CCEEEeCCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHHHHHH----
Confidence 458899999999999999988999999999999999999997 99999999999999888899999999888865
Q ss_pred ChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEee
Q psy1545 192 KPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAI 271 (454)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~ 271 (454)
+||++++++.++++..+. +.++||++++||.|++|+
T Consensus 85 -------------------------------------~GV~i~~~~~v~~~~~~~-------v~l~dg~~i~~D~vi~a~ 120 (121)
T d1d7ya2 85 -------------------------------------QGVDLRFERSVTGSVDGV-------VLLDDGTRIAADMVVVGI 120 (121)
T ss_dssp -------------------------------------TTCEEEESCCEEEEETTE-------EEETTSCEEECSEEEECS
T ss_pred -------------------------------------CCcEEEeCCEEEEEeCCE-------EEECCCCEEECCEEEEee
Confidence 899999999999987643 788999999999999999
Q ss_pred c
Q psy1545 272 G 272 (454)
Q Consensus 272 G 272 (454)
|
T Consensus 121 G 121 (121)
T d1d7ya2 121 G 121 (121)
T ss_dssp C
T ss_pred C
Confidence 8
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.77 E-value=9.1e-19 Score=141.93 Aligned_cols=118 Identities=19% Similarity=0.305 Sum_probs=105.6
Q ss_pred CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCC
Q psy1545 114 PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTA 191 (454)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~ 191 (454)
++++.+++.+|+.++++.+..+++++|||||++|+|+|..|+ |.+||++++.++++++.+++++.+.+.+.+++
T Consensus 14 ~~v~~lr~~~d~~~l~~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~---- 89 (133)
T d1q1ra2 14 NNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHRE---- 89 (133)
T ss_dssp TTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHH----
T ss_pred CCeeEeCCHHHHHHHHHhhccCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccc----
Confidence 678889999999999998888999999999999999999996 99999999999999988888888888888865
Q ss_pred ChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEee
Q psy1545 192 KPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAI 271 (454)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~ 271 (454)
+||++++++.+++++...+......+.+++|+++++|.|++|+
T Consensus 90 -------------------------------------~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~ 132 (133)
T d1q1ra2 90 -------------------------------------AGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGI 132 (133)
T ss_dssp -------------------------------------HTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECC
T ss_pred -------------------------------------cccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEee
Confidence 8999999999999987553234556889999999999999999
Q ss_pred c
Q psy1545 272 G 272 (454)
Q Consensus 272 G 272 (454)
|
T Consensus 133 G 133 (133)
T d1q1ra2 133 G 133 (133)
T ss_dssp C
T ss_pred C
Confidence 8
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.77 E-value=1.2e-19 Score=162.20 Aligned_cols=79 Identities=25% Similarity=0.269 Sum_probs=67.7
Q ss_pred cEEecCEEEEeeccCcCcc--------cccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChH
Q psy1545 260 HTHACDIVVSAIGVVPNSN--------IQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWT 331 (454)
Q Consensus 260 ~~~~~D~vi~a~G~~p~~~--------~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~ 331 (454)
.++.++.+++++|.+|... .++...|+.++++|+|.||+++||++|+|||+|||+..+ .+.+
T Consensus 139 ~~~~~~~~i~atG~~~~~~~~~~~~~~~~~~~~gv~l~~~G~i~vd~~~~T~vpgiyA~GDv~~g~----------~l~~ 208 (229)
T d3lada1 139 QVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGA----------MLAH 208 (229)
T ss_dssp EEECCSCEEECCCEEECCCTEEECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSC----------CCHH
T ss_pred eeeecccccccCCcccccccccccccccchHhcCeeecCCCcEEecccccCCCCCEEEEeCCcchH----------HHHH
Confidence 5688999999999888542 245667899999999999999999999999999998753 5778
Q ss_pred HHHHHHHHHHhhhcCCC
Q psy1545 332 QAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 332 ~A~~~g~~aa~~i~~~~ 348 (454)
.|..+|+.||++|+++.
T Consensus 209 ~A~~~G~~aa~~i~g~~ 225 (229)
T d3lada1 209 KASEEGVVVAERIAGHK 225 (229)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 89999999999999753
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.77 E-value=1.5e-18 Score=155.33 Aligned_cols=77 Identities=26% Similarity=0.326 Sum_probs=61.6
Q ss_pred EEecCEEEEee-ccCcCcc-cccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHH
Q psy1545 261 THACDIVVSAI-GVVPNSN-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGT 338 (454)
Q Consensus 261 ~~~~D~vi~a~-G~~p~~~-~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~ 338 (454)
...++.++++. ++.|+.. ..++..|++++++|+|.||+++|||+|+|||+|||++.+ .+.+.|..||+
T Consensus 146 ~~~~~~~~l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~~~~TsvpgVyAaGDv~~~~----------~l~~~A~~eG~ 215 (229)
T d1ojta1 146 IVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQP----------MLAHKAVHEGH 215 (229)
T ss_dssp EEEEEEEEECCCEEEECGGGTTGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSS----------CCHHHHHHHHH
T ss_pred ceecceEEEEecccCCcccccchhhhCccCCCCCCEEcCCCccCCCCCEEEEEecCCCc----------chHHHHHHHHH
Confidence 34455555554 4556544 255777899999999999999999999999999998753 57888999999
Q ss_pred HHHhhhcCC
Q psy1545 339 YAAKCMVGA 347 (454)
Q Consensus 339 ~aa~~i~~~ 347 (454)
.||.||++.
T Consensus 216 ~Aa~~i~G~ 224 (229)
T d1ojta1 216 VAAENCAGH 224 (229)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 999999985
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.75 E-value=3.3e-18 Score=156.15 Aligned_cols=80 Identities=31% Similarity=0.481 Sum_probs=70.4
Q ss_pred cCCcEEecCEEEEeeccCcCcccccCC----------CCceecCCCceEeccccccccCceeecCcccccCCccccchhh
Q psy1545 257 TNGHTHACDIVVSAIGVVPNSNIQVHG----------TPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQ 326 (454)
Q Consensus 257 ~~g~~~~~D~vi~a~G~~p~~~~~~~~----------~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~ 326 (454)
.+|++++||.|++|+|.+|+.+ .+.. .|++++++|+|.||++|||++|+|||+|||+..+
T Consensus 167 ~~g~~i~ad~viiAtG~~P~~~-~i~~~~~~~~l~~~~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GDv~~~~--------- 236 (261)
T d1mo9a1 167 AAGKVFKAKNLILAVGAGPGTL-DVPEQPRSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGP--------- 236 (261)
T ss_dssp ETTEEEEBSCEEECCCEECCCC-CSTCEECCHHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSS---------
T ss_pred cccceEeeeeeeeccCCCCCcC-cccccccccccccceeeeeccCCEEEeCCCcccCCCCEEEEEEeCCCc---------
Confidence 3568899999999999999986 4433 3688899999999999999999999999998754
Q ss_pred ccChHHHHHHHHHHHhhhcCC
Q psy1545 327 MRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 327 ~~~~~~A~~~g~~aa~~i~~~ 347 (454)
.+++.|..||++||.||+++
T Consensus 237 -~l~~~A~~~G~~aa~~i~G~ 256 (261)
T d1mo9a1 237 -MEMFKARKSGCYAARNVMGE 256 (261)
T ss_dssp -CSHHHHHHHHHHHHHHHTTC
T ss_pred -ccHHHHHHHHHHHHHHHCCC
Confidence 68899999999999999985
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=6e-18 Score=151.56 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=63.1
Q ss_pred cCEEEEeeccCcCcc-cccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHh
Q psy1545 264 CDIVVSAIGVVPNSN-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAK 342 (454)
Q Consensus 264 ~D~vi~a~G~~p~~~-~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~ 342 (454)
.+..+.++|++|+++ +.++..|++++++|+|.||++++|+.|+|||+|||+..+ .+.+.|..+|+.||+
T Consensus 154 ~~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~~~~v~A~GD~~~g~----------~l~~~a~~~G~~aa~ 223 (233)
T d1v59a1 154 GSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGP----------MLAHKAEEEGIAAVE 223 (233)
T ss_dssp CEEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHH
T ss_pred ccccceecccccCCCCcCchhcCeEEcCCCcEEECCeEecCCCCEEEEcCCcccH----------HHHHHHHHHHHHHHH
Confidence 445566899999987 234666899999999999999999999999999998754 578889999999999
Q ss_pred hhcCC
Q psy1545 343 CMVGA 347 (454)
Q Consensus 343 ~i~~~ 347 (454)
+|++.
T Consensus 224 ~i~~~ 228 (233)
T d1v59a1 224 MLKTG 228 (233)
T ss_dssp HHHHS
T ss_pred HHccC
Confidence 99864
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.74 E-value=2.2e-18 Score=137.62 Aligned_cols=117 Identities=20% Similarity=0.307 Sum_probs=103.3
Q ss_pred CCCCCCCC--CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhh
Q psy1545 106 SPRKIWYS--PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFF 181 (454)
Q Consensus 106 ~p~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~ 181 (454)
||+.|++| ++++++++..|+.++.+.++.+++++|||||++|+|+|..|+ |++||++++++++++ +|+++.+.+
T Consensus 1 R~r~p~ipG~e~~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~--~d~~~~~~~ 78 (122)
T d1xhca2 1 RAREPQIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMI 78 (122)
T ss_dssp EECCCCSBTGGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHHHHHH
T ss_pred CCCCcCCCCccceEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC--CCHHHHHHH
Confidence 47788888 678888899999999998888999999999999999999997 999999999999886 799998888
Q ss_pred HHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcE
Q psy1545 182 QDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHT 261 (454)
Q Consensus 182 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~ 261 (454)
.+.+.+ +||++++++.+++++.++ + +.+++.
T Consensus 79 ~~~l~~-----------------------------------------~GV~~~~~~~v~~~~~~~-------v-~~~~~~ 109 (122)
T d1xhca2 79 KDMLEE-----------------------------------------TGVKFFLNSELLEANEEG-------V-LTNSGF 109 (122)
T ss_dssp HHHHHH-----------------------------------------TTEEEECSCCEEEECSSE-------E-EETTEE
T ss_pred HHHHHH-----------------------------------------CCcEEEeCCEEEEEeCCE-------E-EeCCCE
Confidence 888865 899999999999987643 2 557788
Q ss_pred EecCEEEEeecc
Q psy1545 262 HACDIVVSAIGV 273 (454)
Q Consensus 262 ~~~D~vi~a~G~ 273 (454)
+++|.|++|+|.
T Consensus 110 i~~D~vi~a~Gv 121 (122)
T d1xhca2 110 IEGKVKICAIGI 121 (122)
T ss_dssp EECSCEEEECCE
T ss_pred EECCEEEEEEEe
Confidence 999999999995
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.73 E-value=2e-18 Score=155.65 Aligned_cols=78 Identities=24% Similarity=0.288 Sum_probs=67.4
Q ss_pred cEEecCEEEEeeccCcCccc---------ccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccCh
Q psy1545 260 HTHACDIVVSAIGVVPNSNI---------QVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLW 330 (454)
Q Consensus 260 ~~~~~D~vi~a~G~~p~~~~---------~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~ 330 (454)
+.+++|.+++++|.+|.... -++..+++++++|+|.||+++|||.|+|||+|||++.+ .+.
T Consensus 148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~~~iyA~GDv~~~~----------~~~ 217 (240)
T d1feca1 148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRV----------MLT 217 (240)
T ss_dssp EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSC----------CCH
T ss_pred EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccCcCCCCEEEEEECCCCc----------cch
Confidence 56899999999999997531 14556788999999999999999999999999998753 678
Q ss_pred HHHHHHHHHHHhhhcCC
Q psy1545 331 TQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 331 ~~A~~~g~~aa~~i~~~ 347 (454)
+.|..||+.||+++++.
T Consensus 218 ~~A~~eg~~aa~~~~~~ 234 (240)
T d1feca1 218 PVAINEGAAFVDTVFAN 234 (240)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHhCC
Confidence 89999999999999985
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=9.7e-18 Score=136.74 Aligned_cols=116 Identities=18% Similarity=0.319 Sum_probs=104.6
Q ss_pred CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc------CCcEEEEEeCCCccccccCCcchhhhHHHhhc
Q psy1545 114 PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS------NVDIVWVVKDKHISATFLDPGAAEFFQDSINK 187 (454)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~------g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~ 187 (454)
+.++.+++.+|+.++.+.++.+++++|||||++|+|+|..|. |.+|+++++.++++++.+++++...+.+.+.+
T Consensus 16 ~~~~~~r~~~d~~~l~~~~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~ 95 (137)
T d1m6ia2 16 SRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRR 95 (137)
T ss_dssp HTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEcCHHHHHHHHHHhhcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHh
Confidence 457778899999999998888999999999999999999883 89999999999999888899999888888865
Q ss_pred cCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEE
Q psy1545 188 TNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIV 267 (454)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~v 267 (454)
+||++++++.|++++.+++ .+.++++||++++||.|
T Consensus 96 -----------------------------------------~GV~~~~~~~V~~i~~~~~---~~~v~l~~G~~i~aD~V 131 (137)
T d1m6ia2 96 -----------------------------------------EGVKVMPNAIVQSVGVSSG---KLLIKLKDGRKVETDHI 131 (137)
T ss_dssp -----------------------------------------TTCEEECSCCEEEEEEETT---EEEEEETTSCEEEESEE
T ss_pred -----------------------------------------CCcEEEeCCEEEEEEecCC---EEEEEECCCCEEECCEE
Confidence 9999999999999987653 67899999999999999
Q ss_pred EEeecc
Q psy1545 268 VSAIGV 273 (454)
Q Consensus 268 i~a~G~ 273 (454)
++|+|.
T Consensus 132 i~A~Gv 137 (137)
T d1m6ia2 132 VAAVGL 137 (137)
T ss_dssp EECCCE
T ss_pred EEeecC
Confidence 999984
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.71 E-value=5.8e-17 Score=129.27 Aligned_cols=113 Identities=20% Similarity=0.281 Sum_probs=99.9
Q ss_pred CceeeeeccchHHHHHHHhh--cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccC
Q psy1545 114 PHVITIRDTDSVAVLQEKLK--SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTN 189 (454)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~~~--~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~ 189 (454)
++++.+++.+|+.++++.+. .+++++|||||++|+|+|..|+ |.+||++++.++++++.+|+++++.+.+.+++
T Consensus 7 ~~v~~~~~~~da~~i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~-- 84 (123)
T d1nhpa2 7 DNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA-- 84 (123)
T ss_dssp BSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHT--
T ss_pred CCeEEeCCHHHHHHHHHHhhccCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhc--
Confidence 78899999999999998875 4789999999999999999997 99999999999999988899999999888865
Q ss_pred CCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEE
Q psy1545 190 TAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVS 269 (454)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~ 269 (454)
+||++++++.+++++.++ .+...+.+|++++||.|++
T Consensus 85 ---------------------------------------~gv~~~~~~~v~~i~~~~----~~~~v~~dg~~i~~D~vi~ 121 (123)
T d1nhpa2 85 ---------------------------------------NNITIATGETVERYEGDG----RVQKVVTDKNAYDADLVVV 121 (123)
T ss_dssp ---------------------------------------TTEEEEESCCEEEEECSS----BCCEEEESSCEEECSEEEE
T ss_pred ---------------------------------------CCeEEEeCceEEEEEcCC----CEEEEEeCCCEEECCEEEE
Confidence 899999999999998764 2334477888999999999
Q ss_pred ee
Q psy1545 270 AI 271 (454)
Q Consensus 270 a~ 271 (454)
|.
T Consensus 122 aI 123 (123)
T d1nhpa2 122 AV 123 (123)
T ss_dssp CS
T ss_pred EC
Confidence 84
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=1.1e-17 Score=132.21 Aligned_cols=107 Identities=20% Similarity=0.262 Sum_probs=93.3
Q ss_pred eeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhh
Q psy1545 119 IRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETI 196 (454)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~ 196 (454)
..+++++..+.+ .|++++|||||++|+|+|..|+ |.+||+++|++++++. +|+++.+.+++.+++
T Consensus 8 ~~t~~~~~~l~~---~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~-~d~~~~~~~~~~l~~--------- 74 (116)
T d1gesa2 8 GIDSDGFFALPA---LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMISETLVEVMNA--------- 74 (116)
T ss_dssp SBCHHHHHHCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH---------
T ss_pred cCCHHHHhChhh---CCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh-cchhhHHHHHHHHHH---------
Confidence 346677776654 3899999999999999999997 9999999999999985 799999998888866
Q ss_pred hhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeec
Q psy1545 197 FKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIG 272 (454)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G 272 (454)
+||++++++.++++..+++ ..+.+.+++|+++++|.|++|+|
T Consensus 75 --------------------------------~GV~~~~~~~v~~i~~~~~--~~~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 75 --------------------------------EGPQLHTNAIPKAVVKNTD--GSLTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp --------------------------------HSCEEECSCCEEEEEECTT--SCEEEEETTSCEEEESEEEECSC
T ss_pred --------------------------------CCCEEEeCCEEEEEEEcCC--cEEEEEECCCCEEEcCEEEEecC
Confidence 8999999999999987663 35678999999999999999998
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.69 E-value=1.3e-17 Score=143.38 Aligned_cols=170 Identities=15% Similarity=0.139 Sum_probs=112.6
Q ss_pred CCeEEEEcCchhHHHHHHHhc----CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS----NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP 210 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (454)
+||++|||||++|+|+|..|. ..+||++++.+.+.... ...........
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~----~~~~~~~~~~~----------------------- 54 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCY----LSNEVIGGDRK----------------------- 54 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECST----THHHHHHTSSC-----------------------
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcccccc----ccccccchhhh-----------------------
Confidence 799999999999999999996 46899999888665421 11111110000
Q ss_pred CCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCC------
Q psy1545 211 SLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGT------ 284 (454)
Q Consensus 211 ~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~------ 284 (454)
... .......+...++.+..+ .+..+.... ..+.+.+++++++|.+++|+|.+|+.+ ++...
T Consensus 55 --~~~---~~~~~~~~~~~~v~~~~~-~~~~~~~~~-----~~~~~~~~~~i~~D~li~atG~~~~~~-~i~~~~~~~~~ 122 (186)
T d1fcda1 55 --LES---IKHGYDGLRAHGIQVVHD-SATGIDPDK-----KLVKTAGGAEFGYDRCVVAPGIELIYD-KIEQRAGKIAQ 122 (186)
T ss_dssp --GGG---GEECSHHHHTTTEEEECC-CEEECCTTT-----TEEEETTSCEEECSEEEECCCEEECCT-TSTEEECHHHH
T ss_pred --hhh---hhhhhhhccccceeEeee-eeEeeeecc-----ceeecccceeeccceEEEEeccccchh-hhhhhhhhhee
Confidence 000 000111124467888766 344443332 357788899999999999999999987 55433
Q ss_pred --CceecCCCceEecc-ccc-cccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC
Q psy1545 285 --PFELAPDCGIGVNE-LMQ-TSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351 (454)
Q Consensus 285 --~l~~~~~g~i~vd~-~~~-t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 351 (454)
++.. .++++.++. .++ ++.++||++||++... + .++.++.|..||+++|+||.+.+.|+
T Consensus 123 ~~~~~~-~~~~~~~~~~~~~~~~~~~i~~iGd~~~~~-~------~p~~~~~A~~q~~~~A~ni~~~~~G~ 185 (186)
T d1fcda1 123 IAGLTN-DAGWCPVDIKTFESSIHKGIHVIGDASIAN-P------MPKSGYSANSQGKVAAAAVVVLLKGE 185 (186)
T ss_dssp HHTCCC-TTSSEEBCSSSCBBSSSTTEEECTTSEECT-T------CCSSHHHHHHHHHHHHHHHHHHHHSS
T ss_pred ccCccc-ccccccceeeeeecccccCceEeccccccC-C------CCchHhHHHHHHHHHHHHHHHHhcCC
Confidence 2222 345555554 344 8899999999998642 1 23568899999999999999876554
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.68 E-value=3e-17 Score=130.06 Aligned_cols=107 Identities=17% Similarity=0.268 Sum_probs=91.2
Q ss_pred eccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc-----CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChh
Q psy1545 120 RDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS-----NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPE 194 (454)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~-----g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~ 194 (454)
.+++++..+.+ .|++++|||||++|+|+|..+. |.+|+++++++++++. +|+++...+++.+.+
T Consensus 6 ~ts~~~~~l~~---~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~------- 74 (117)
T d1feca2 6 ITSNEAFYLDE---APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-FDSELRKQLTEQLRA------- 74 (117)
T ss_dssp BCHHHHTTCSS---CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHH-------
T ss_pred EchHHhhCccc---cCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccccc-ccchhhHHHHHHHhh-------
Confidence 35566655543 3899999999999999997653 8899999999999985 799999999888866
Q ss_pred hhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc
Q psy1545 195 TIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273 (454)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~ 273 (454)
+||++++++.+++++.+++ ....+.+++|++++||.|++|+|+
T Consensus 75 ----------------------------------~GI~v~~~~~v~~i~~~~~--g~~~v~~~~g~~i~~D~Vi~a~GR 117 (117)
T d1feca2 75 ----------------------------------NGINVRTHENPAKVTKNAD--GTRHVVFESGAEADYDVVMLAIGR 117 (117)
T ss_dssp ----------------------------------TTEEEEETCCEEEEEECTT--SCEEEEETTSCEEEESEEEECSCE
T ss_pred ----------------------------------CcEEEEcCCEEEEEEECCC--CEEEEEECCCCEEEcCEEEEecCC
Confidence 8999999999999987653 256789999999999999999996
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.67 E-value=3.8e-17 Score=130.35 Aligned_cols=118 Identities=20% Similarity=0.220 Sum_probs=94.4
Q ss_pred CCCCCCCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHH
Q psy1545 107 PRKIWYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDS 184 (454)
Q Consensus 107 p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~ 184 (454)
|+.|.+|+. ..+.+++++..+.+ .|++++|||||++|+|+|..++ |++||++++++++++. +|+++++.+.+.
T Consensus 2 ~~lP~ip~~-~~i~ts~~~l~l~~---~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~-~d~~~~~~l~~~ 76 (125)
T d1ojta2 2 TKLPFIPED-PRIIDSSGALALKE---VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQKQ 76 (125)
T ss_dssp CCCSSCCCC-TTEECHHHHTTCCC---CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHH
T ss_pred CCCCCCCCC-CcEEcHHHhhCccc---cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc-chhhHHHHHHHH
Confidence 455655521 12346666666543 3899999999999999999997 9999999999999985 799999999999
Q ss_pred hhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec--CC--c
Q psy1545 185 INKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT--NG--H 260 (454)
Q Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~--~g--~ 260 (454)
+.+ +||++++++.+++++..++ .+.+.++ +| +
T Consensus 77 l~~-----------------------------------------~gv~~~~~~~v~~v~~~~~---g~~v~~~~~~g~~~ 112 (125)
T d1ojta2 77 NEY-----------------------------------------RFDNIMVNTKTVAVEPKED---GVYVTFEGANAPKE 112 (125)
T ss_dssp HGG-----------------------------------------GEEEEECSCEEEEEEEETT---EEEEEEESSSCCSS
T ss_pred HHH-----------------------------------------cCcccccCcEEEEEEEcCC---cEEEEEEeCCCCeE
Confidence 866 9999999999999997764 3445443 33 4
Q ss_pred EEecCEEEEeecc
Q psy1545 261 THACDIVVSAIGV 273 (454)
Q Consensus 261 ~~~~D~vi~a~G~ 273 (454)
++++|.|++|+|+
T Consensus 113 ~i~~D~vl~A~GR 125 (125)
T d1ojta2 113 PQRYDAVLVAAGR 125 (125)
T ss_dssp CEEESCEEECCCE
T ss_pred EEEcCEEEEecCC
Confidence 7999999999996
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.67 E-value=9.6e-17 Score=127.21 Aligned_cols=106 Identities=22% Similarity=0.259 Sum_probs=90.8
Q ss_pred eeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhh
Q psy1545 119 IRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETI 196 (454)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~ 196 (454)
+.+++++..+.+ .|++++|||||++|+|+|..|+ |++||++++++++++. +|+++...+++.+++
T Consensus 9 v~~s~~~l~l~~---~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~-~d~ei~~~l~~~l~~--------- 75 (119)
T d3lada2 9 IVDSTGALDFQN---VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAKEAQKILTK--------- 75 (119)
T ss_dssp EEEHHHHTSCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHH---------
T ss_pred EEchhHhhCccc---CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc-ccchhHHHHHHHHHh---------
Confidence 346666666654 3899999999999999999997 9999999999999985 799999999999866
Q ss_pred hhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC---cEEecCEEEEeec
Q psy1545 197 FKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG---HTHACDIVVSAIG 272 (454)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g---~~~~~D~vi~a~G 272 (454)
.||++++++++++++..++ .+.+++.++ ++++||.|++|+|
T Consensus 76 --------------------------------~Gv~i~~~~~v~~i~~~~~---~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 76 --------------------------------QGLKILLGARVTGTEVKNK---QVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp --------------------------------TTEEEEETCEEEEEEECSS---CEEEEEESSSEEEEEEESEEEECSC
T ss_pred --------------------------------cCceeecCcEEEEEEEeCC---EEEEEEEECCCCEEEECCEEEEeeC
Confidence 8999999999999998764 456666554 6799999999998
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.65 E-value=1.4e-16 Score=126.03 Aligned_cols=106 Identities=17% Similarity=0.249 Sum_probs=89.4
Q ss_pred eeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc-----CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCCh
Q psy1545 119 IRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS-----NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKP 193 (454)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~-----g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~ 193 (454)
..+++++..+.+ .|++++|||||++|+|+|..+. +.+||++++++++++. +|+++++.+.+.+++
T Consensus 7 ~~t~~~~~~l~~---~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~-~d~~~~~~l~~~l~~------ 76 (117)
T d1aoga2 7 CISSNEAFYLPE---PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-FDHTLREELTKQLTA------ 76 (117)
T ss_dssp CBCHHHHTTCSS---CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHH------
T ss_pred eEcHHHHhCchh---cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcc-cchHHHHHHHHHHHh------
Confidence 446666665443 3899999999999999997664 5689999999999975 799999999999876
Q ss_pred hhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEee
Q psy1545 194 ETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAI 271 (454)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~ 271 (454)
+||++++++++++++...+ ....+.++||++++||.|++|.
T Consensus 77 -----------------------------------~GV~v~~~~~v~~ie~~~~--~~~~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 77 -----------------------------------NGIQILTKENPAKVELNAD--GSKSVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp -----------------------------------TTCEEEESCCEEEEEECTT--SCEEEEETTSCEEEESEEEECS
T ss_pred -----------------------------------cCcEEEcCCEEEEEEEcCC--CeEEEEECCCcEEEeCEEEEeC
Confidence 8999999999999986553 2567999999999999999984
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.64 E-value=1.7e-16 Score=125.06 Aligned_cols=113 Identities=21% Similarity=0.312 Sum_probs=92.8
Q ss_pred CCCCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhc
Q psy1545 110 IWYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINK 187 (454)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~ 187 (454)
|++|+ +....+++++..+. .|++++|||||++|+|+|..|+ |.+||+++|++++++. +|+++++.+.+.+.+
T Consensus 2 P~IpG-~e~~~ts~~~~~l~----~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~ 75 (117)
T d1onfa2 2 PPVKG-IENTISSDEFFNIK----ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVINVLENDMKK 75 (117)
T ss_dssp CSCTT-GGGCEEHHHHTTCC----CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHH
T ss_pred cccCC-HhHcCchhHHhccC----CCCEEEEECCchHHHHHHHHHHhccccceeeehhcccccc-ccHHHHHHHHHHHHh
Confidence 55551 22334566665543 4899999999999999999996 9999999999999975 799999999999866
Q ss_pred cCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEE-ecCE
Q psy1545 188 TNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTH-ACDI 266 (454)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~-~~D~ 266 (454)
+||++++++.+++++..++ ..+.+.+++|+.+ .+|.
T Consensus 76 -----------------------------------------~gV~i~~~~~v~~i~~~~~--~~~~v~~~~G~~~~~~D~ 112 (117)
T d1onfa2 76 -----------------------------------------NNINIVTFADVVEIKKVSD--KNLSIHLSDGRIYEHFDH 112 (117)
T ss_dssp -----------------------------------------TTCEEECSCCEEEEEESST--TCEEEEETTSCEEEEESE
T ss_pred -----------------------------------------CCCEEEECCEEEEEEEcCC--CeEEEEECCCCEEEeCCE
Confidence 8999999999999987653 3578999999877 4799
Q ss_pred EEEee
Q psy1545 267 VVSAI 271 (454)
Q Consensus 267 vi~a~ 271 (454)
|++|.
T Consensus 113 Vi~AI 117 (117)
T d1onfa2 113 VIYCV 117 (117)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99984
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.64 E-value=2e-16 Score=125.85 Aligned_cols=106 Identities=20% Similarity=0.259 Sum_probs=88.6
Q ss_pred eeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhh
Q psy1545 119 IRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETI 196 (454)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~ 196 (454)
+.+++++..+.+ .|++++|||||++|+|+|..|+ |++||++++++++++. +|+++.+.+++.+++
T Consensus 10 v~ts~~~~~l~~---~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~-~d~ei~~~l~~~l~~--------- 76 (122)
T d1v59a2 10 IVSSTGALSLKE---IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGEVAKATQKFLKK--------- 76 (122)
T ss_dssp EECHHHHTTCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SCHHHHHHHHHHHHH---------
T ss_pred EEehHHhhCccc---CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh-hhhhhHHHHHHHHHh---------
Confidence 346666666543 3899999999999999999997 9999999999999985 799999999999876
Q ss_pred hhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC-----cEEecCEEEEe
Q psy1545 197 FKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG-----HTHACDIVVSA 270 (454)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g-----~~~~~D~vi~a 270 (454)
+||++++++.+++++..++ +..+.+.+.++ +++++|.|++|
T Consensus 77 --------------------------------~GV~i~~~~~v~~v~~~~~-~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 77 --------------------------------QGLDFKLSTKVISAKRNDD-KNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp --------------------------------TTCEEECSEEEEEEEEETT-TTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred --------------------------------ccceEEeCCEEEEEEEeCC-CcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 8999999999999987654 34556666554 57999999986
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.63 E-value=3.1e-16 Score=140.60 Aligned_cols=75 Identities=23% Similarity=0.352 Sum_probs=58.3
Q ss_pred EEecCEEEEeeccCcC--------cccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccCh
Q psy1545 261 THACDIVVSAIGVVPN--------SNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLW 330 (454)
Q Consensus 261 ~~~~D~vi~a~G~~p~--------~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~ 330 (454)
.++++.++++++.+|. .. . +...++.++ +|+|.||++|||+.|+|||+|||++.+ .+.
T Consensus 149 ~~~a~~v~i~~~~~~~~~~~~~~~~~-~l~~~~~gv~~~-~G~I~vde~~~T~~~~iyAvGDv~~~~----------~l~ 216 (238)
T d1aoga1 149 RLETEHILLASGSWPHMPNGRSPRTK-DLQLQNAGVMIK-NGGVQVDEYSRTNVSNIYAIGDVTNRV----------MLT 216 (238)
T ss_dssp EEEBSCEEECCCEEECCCCCEEECCG-GGCGGGTTCCEE-TTEECCCTTCBCSSTTEEECGGGGTSC----------CCH
T ss_pred cccccceeeeccccccccccccccee-eecccccEEEEc-CCeEEecCCeeeccCCEEEEEEecCCc----------cch
Confidence 4566666665555553 33 2 233567765 899999999999999999999998753 678
Q ss_pred HHHHHHHHHHHhhhcCC
Q psy1545 331 TQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 331 ~~A~~~g~~aa~~i~~~ 347 (454)
+.|..+|+.||++|++.
T Consensus 217 ~~A~~eg~~aa~~i~g~ 233 (238)
T d1aoga1 217 PVAINEAAALVDTVFGT 233 (238)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHcCC
Confidence 89999999999999984
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.63 E-value=9.3e-19 Score=156.99 Aligned_cols=160 Identities=14% Similarity=0.146 Sum_probs=100.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhh-HHHHHhc-CcEEEcceEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEET-DANKFEG-LCTVIVDTVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~i~~~~~~v~~i~ 80 (454)
.+|+|||||+||++||..|+++ |++|+|+|+++.+++.+...........+..... ....+.. ...... ..++
T Consensus 50 k~VvIIGaGpAGl~aA~~l~~~--G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 124 (233)
T d1djqa3 50 DSVLIVGAGPSGSEAARVLMES--GYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKE---SQLA 124 (233)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTT---CEEE
T ss_pred ceEEEEcccHHHHHHHHHHHHh--ccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhccee---eeee
Confidence 6899999999999999999998 9999999999988776654332222222211111 1111211 111000 1112
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc-
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS- 155 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~- 155 (454)
...+.+..++..++.||++|+|||+.+..|.++ ............... ...+++++|+|+|++|+|+|..+.
T Consensus 125 ~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vvViGgG~~g~e~A~~l~~ 201 (233)
T d1djqa3 125 LGQKPMTADDVLQYGADKVIIATGASECTLWNELKARESEWAENDIKGIYLI---GDAEAPRLIADATFTGHRVAREIEE 201 (233)
T ss_dssp CSCCCCCHHHHHTSCCSEEEECCCEECCHHHHHHHHTTHHHHHTTCCEEEEC---GGGTSCCCHHHHHHHHHHHHHTTTS
T ss_pred cccccccchhhhhhccceeeeccCCCcccccccccccccccchhhhhhhhhc---cccCCceeEecCchHHHHHHHHHHh
Confidence 222233333344678999999999987766543 111111111111111 113789999999999999999997
Q ss_pred -CCcEEEEEeCCCccc
Q psy1545 156 -NVDIVWVVKDKHISA 170 (454)
Q Consensus 156 -g~~V~~i~~~~~~~~ 170 (454)
+.+|++++|++.+..
T Consensus 202 ~g~~Vtli~r~~~~~~ 217 (233)
T d1djqa3 202 ANPQIAIPYKRETIAW 217 (233)
T ss_dssp SCTTSCCCCCCCCCCT
T ss_pred cCCceEEEEecccccc
Confidence 999999999887654
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=1.2e-15 Score=134.73 Aligned_cols=101 Identities=18% Similarity=0.150 Sum_probs=76.8
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc--cccC-----CCCceecCCCceEeccccc
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN--IQVH-----GTPFELAPDCGIGVNELMQ 301 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~--~~~~-----~~~l~~~~~g~i~vd~~~~ 301 (454)
.||++........... ....++..+.++.+++|||.+|..+ +..+ ..++.++++|.+.+|++++
T Consensus 104 ~gV~v~~~~~~~~~~~---------~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l~~~gv~~~~~~~i~~d~~~~ 174 (217)
T d1gesa1 104 NNVDVIKGFARFVDAK---------TLEVNGETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQN 174 (217)
T ss_dssp TTCEEEESCCEEEETT---------EEEETTEEEEEEEEEECCCEEECCCEEESCTTSCHHHHTCCBCTTSCBCCCTTSB
T ss_pred CeEEEEeeecccceee---------eecCCCceeeeeeeeeecCccccCCCCCCcCCcccccccEEEcCCccEeeCchhc
Confidence 7888877654332211 2234567899999999999988754 1111 2357778899999999999
Q ss_pred cccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 302 TSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 302 t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
|+.|+||++||++.. +.+++.+..+|+.++.++.+..
T Consensus 175 t~~~~i~~iG~g~~g----------~ela~~~~~~G~~v~~~~~~~~ 211 (217)
T d1gesa1 175 TNIEGIYAVGDNTGA----------VELTPVAVAAGRRLSERLFNNK 211 (217)
T ss_dssp CSSTTEEECSGGGTS----------CCCHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCcEEEECCCccH----------HHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999875 3688899999999999998753
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.59 E-value=1.6e-15 Score=119.92 Aligned_cols=104 Identities=23% Similarity=0.306 Sum_probs=86.6
Q ss_pred eeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhh
Q psy1545 119 IRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETI 196 (454)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~ 196 (454)
+.+++++..+.+ .|++++|||||++|+|+|..+. |.+||+++|++++++. +|+++++.+.+.+++
T Consensus 9 i~~s~~~l~~~~---~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~--------- 75 (117)
T d1ebda2 9 ILDSTGALNLGE---VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKK--------- 75 (117)
T ss_dssp EECHHHHHTCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHH---------
T ss_pred EEChhHhhChhh---cCCeEEEECCCccceeeeeeecccccEEEEEEecceeccc-ccchhHHHHHHHHHh---------
Confidence 346677776654 3899999999999999999986 9999999999999985 799999999988866
Q ss_pred hhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEe-cCC--cEEecCEEEEe
Q psy1545 197 FKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL-TNG--HTHACDIVVSA 270 (454)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~-~~g--~~~~~D~vi~a 270 (454)
+||++++++.+++++..++ .+.+.+ .+| +++++|.|+++
T Consensus 76 --------------------------------~GI~i~~~~~v~~i~~~~~---~~~v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 76 --------------------------------KGVEVVTNALAKGAEERED---GVTVTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp --------------------------------TTCEEEESEEEEEEEEETT---EEEEEEEETTEEEEEEESEEEEC
T ss_pred --------------------------------cCCEEEcCCEEEEEEEcCC---EEEEEEEeCCCEEEEEeEEEEEC
Confidence 8999999999999987664 344554 344 57999999974
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.59 E-value=8e-16 Score=122.54 Aligned_cols=107 Identities=25% Similarity=0.312 Sum_probs=87.2
Q ss_pred eeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhh
Q psy1545 119 IRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETI 196 (454)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~ 196 (454)
+.+++++..+.+ .|++++|||||++|+|+|..+. |++||+++|++++++. +|+++...+.+.+++
T Consensus 12 v~ts~~~l~l~~---~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~-~d~~~~~~l~~~l~~--------- 78 (123)
T d1dxla2 12 IVSSTGALALSE---IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRSLEK--------- 78 (123)
T ss_dssp EECHHHHTTCSS---CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH---------
T ss_pred EEeHHHhhCccc---cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch-hhhcchhhhhhhhhc---------
Confidence 446666665543 3899999999999999999997 9999999999999974 899999999998866
Q ss_pred hhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC---cEEecCEEEEee
Q psy1545 197 FKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG---HTHACDIVVSAI 271 (454)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g---~~~~~D~vi~a~ 271 (454)
.||++++++.+.+++..++ +..+.+...++ ++++||.|++|.
T Consensus 79 --------------------------------~GI~i~~~~~v~~i~~~~~-~~~v~~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 79 --------------------------------QGMKFKLKTKVVGVDTSGD-GVKLTVEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp --------------------------------SSCCEECSEEEEEEECSSS-SEEEEEEESSSCCCEEEEESEEECCC
T ss_pred --------------------------------ccceEEcCCceEEEEEccC-eEEEEEEECCCCeEEEEEcCEEEEcC
Confidence 8999999999999998764 33344454433 568999999874
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.58 E-value=6e-15 Score=127.62 Aligned_cols=173 Identities=20% Similarity=0.159 Sum_probs=111.5
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCC-C
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP-S 211 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ 211 (454)
.++|+|||||++|+++|..++ |.+|.++++....... .... +.... .+.....+.. .
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~-~~~~----~~~~~---------------~~~~~~~~~~~~ 64 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIA-PGGQ----LTTTT---------------DVENFPGFPEGI 64 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBC-TTCG----GGGCS---------------EECCSTTCTTCE
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccc-cccc----cccch---------------hhhccccccccc
Confidence 579999999999999998886 9999999865433210 0000 00000 0000000000 0
Q ss_pred CCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc-----CcCcccccCCCCc
Q psy1545 212 LGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV-----VPNSNIQVHGTPF 286 (454)
Q Consensus 212 l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~-----~p~~~~~~~~~~l 286 (454)
.++++... +.+..++.|+++..+ .|.++...++ ...+. .+..+..+|.+++++|. .|++. ++.. ++
T Consensus 65 ~~~el~~~--~~~q~~~~g~~i~~~-~V~~~~~~~~---~~~v~-~~~~~~~~~~~~~a~g~~~~g~~p~~~-~~~~-~v 135 (192)
T d1vdca1 65 LGVELTDK--FRKQSERFGTTIFTE-TVTKVDFSSK---PFKLF-TDSKAILADAVILAIGAVAKGHEPATK-FLDG-GV 135 (192)
T ss_dssp EHHHHHHH--HHHHHHHTTCEEECC-CCCEEECSSS---SEEEE-CSSEEEEEEEEEECCCEEECCEEESCG-GGTT-SS
T ss_pred cchHHHHH--HHHHHHhhcceeeee-eEEecccccC---cEEec-ccceeeeeeeEEEEeeeeecccCchHH-HhcC-ce
Confidence 00111111 122234478988766 6777776553 34444 34457899999999885 46766 5543 58
Q ss_pred eecCCCceEecc-ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhc
Q psy1545 287 ELAPDCGIGVNE-LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMV 345 (454)
Q Consensus 287 ~~~~~g~i~vd~-~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 345 (454)
+++++|+|.+|+ +++|+.|+|||+|||...+ .+....|..+|..||.++.
T Consensus 136 eld~~G~i~~~~~~~~Ts~~GV~a~GDv~~~~---------~r~~v~A~g~G~~aA~~~~ 186 (192)
T d1vdca1 136 ELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKK---------YRQAITAAGTGCMAALDAE 186 (192)
T ss_dssp CBCTTSCBCCCTTSCBCSSTTEEECGGGGCSS---------CCCHHHHHHHHHHHHHHHH
T ss_pred eecCCCeEEeCCCceEecCCCEEEeeecCCcc---------cceEEEEEechHHHHHHHH
Confidence 899999999995 7899999999999998764 3456778899999998764
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=9.8e-16 Score=122.46 Aligned_cols=107 Identities=17% Similarity=0.242 Sum_probs=85.9
Q ss_pred eccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhh
Q psy1545 120 RDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIF 197 (454)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~ 197 (454)
.+++++..+.+. ||+++|||||++|+|+|..|. |.+||+++|++++++. +|+++.+.+.+.+++
T Consensus 10 ~ts~~~~~l~~~---pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~~---------- 75 (125)
T d3grsa2 10 ITSDGFFQLEEL---PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELEN---------- 75 (125)
T ss_dssp BCHHHHTTCCSC---CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHH----------
T ss_pred CCHHHHhChhhc---CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccc-hhhHHHHHHHHHHHH----------
Confidence 466666665543 899999999999999999986 9999999999999985 799999999888866
Q ss_pred hhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEe-cCC------cEEecCEEEEe
Q psy1545 198 KRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL-TNG------HTHACDIVVSA 270 (454)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~-~~g------~~~~~D~vi~a 270 (454)
+||++++++++++++..++ +..+.+.. ..| ...++|.|++|
T Consensus 76 -------------------------------~Gv~i~~~~~v~~i~~~~~-g~~v~~~~~~~g~~~~~~~~~~~D~vl~a 123 (125)
T d3grsa2 76 -------------------------------AGVEVLKFSQVKEVKKTLS-GLEVSMVTAVPGRLPVMTMIPDVDCLLWA 123 (125)
T ss_dssp -------------------------------TTCEEETTEEEEEEEEETT-EEEEEEEECCTTSCCEEEEEEEESEEEEC
T ss_pred -------------------------------CCCEEEeCCEEEEEEEcCC-eEEEEEEEccCCcCcCccccccCCEEEEE
Confidence 8999999999999987664 21222222 233 35789999999
Q ss_pred ec
Q psy1545 271 IG 272 (454)
Q Consensus 271 ~G 272 (454)
+|
T Consensus 124 ~G 125 (125)
T d3grsa2 124 IG 125 (125)
T ss_dssp SC
T ss_pred eC
Confidence 87
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.57 E-value=9.1e-19 Score=159.72 Aligned_cols=139 Identities=14% Similarity=0.186 Sum_probs=81.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc-------------------c---cccchh--
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL-------------------L---SDITVE-- 58 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~-------------------~---~~~~~~-- 58 (454)
||++||||||||++||.+++++ |.+|+|||++...+.|.++.+.+.. + ..+++.
T Consensus 2 yDviVIG~G~aG~~aA~~aa~~--G~~V~liE~~~~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 79 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAARH--NAKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLL 79 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhH
Confidence 8999999999999999999998 9999999999877766665432210 0 001111
Q ss_pred -h----------h-HHHHHhc-CcEEEcceEEEEeCcccEEEec-----------cCcEEEecEEEEecCCCCCCC--CC
Q psy1545 59 -E----------T-DANKFEG-LCTVIVDTVAAIDPRVNCVITE-----------KQNRIKYKTLCICTGASPRKI--WY 112 (454)
Q Consensus 59 -~----------~-~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~-----------~g~~i~~d~lviAtG~~p~~~--~~ 112 (454)
. . ....+.+ +++++.++..+++++...|... +++.+++|+++||||++|..+ .+
T Consensus 80 ~~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~ 159 (259)
T d1onfa1 80 VERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDT 159 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTT
T ss_pred HhhhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCccccccc
Confidence 0 0 1122333 9999988887777655443221 234699999999999998421 12
Q ss_pred C---CceeeeeccchHHHHHHHhhcCCeEEEEcCchhH
Q psy1545 113 S---PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIA 147 (454)
Q Consensus 113 ~---~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g 147 (454)
+ -.-..+.+.+.+..+.+ +.+..|+|+|.+|
T Consensus 160 ~~~~l~~~~i~ts~~~~~~d~----~~~t~Vig~gaiG 193 (259)
T d1onfa1 160 ENLKLEKLNVETNNNYIVVDE----NQRTSVNNIYAVG 193 (259)
T ss_dssp TTSSCTTTTCCBSSSCEEECT----TCBCSSSSEEECS
T ss_pred cccccccceeeeccccccccc----CCceeEeeEEEEE
Confidence 2 11122334444443322 3455788888776
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.57 E-value=6.4e-16 Score=121.73 Aligned_cols=102 Identities=20% Similarity=0.214 Sum_probs=83.1
Q ss_pred ccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhh
Q psy1545 121 DTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFK 198 (454)
Q Consensus 121 ~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~ 198 (454)
+++++..+.+ .|++++|||||++|+|+|..|+ |++||++++.+++++. +|+++.+.+.+.+.+
T Consensus 10 ~s~~~l~~~~---~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~----------- 74 (115)
T d1lvla2 10 SSTEALAPKA---LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKK----------- 74 (115)
T ss_dssp CHHHHTCCSS---CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH-----------
T ss_pred CChHHhCccc---CCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc-ccchhHHHHHHHHHh-----------
Confidence 4455544433 3899999999999999999997 9999999999999986 799999998888866
Q ss_pred hcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC--CcEEecCEEEEeec
Q psy1545 199 RMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN--GHTHACDIVVSAIG 272 (454)
Q Consensus 199 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~--g~~~~~D~vi~a~G 272 (454)
+||++++++.|++++.+. ......+ ++++++|.|++|+|
T Consensus 75 ------------------------------~gV~i~~~~~V~~i~~~~-----~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 75 ------------------------------LGIALHLGHSVEGYENGC-----LLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp ------------------------------HTCEEETTCEEEEEETTE-----EEEECSSSCCCEECCSCEEECCC
T ss_pred ------------------------------hcceEEcCcEEEEEcCCe-----EEEEEcCCCeEEEEcCEEEEecC
Confidence 899999999999997543 2222222 36899999999998
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=2.6e-14 Score=123.27 Aligned_cols=169 Identities=19% Similarity=0.211 Sum_probs=106.3
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCC-
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP- 210 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 210 (454)
+.++|+|||||++|+++|..++ |.+|+++++.++.........+.... .+..
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~-------------------------~~~~~ 58 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWP-------------------------GDPND 58 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCST-------------------------TCCSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhh-------------------------ccccc
Confidence 3678999999999999998886 99999998765322110000000000 0000
Q ss_pred CCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc----cccCCCCc
Q psy1545 211 SLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN----IQVHGTPF 286 (454)
Q Consensus 211 ~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~----~~~~~~~l 286 (454)
..+.++... ......+.++++..+ .|+++...++ .+.+... ...++++.+++++|..|... .+++. .+
T Consensus 59 ~~~~~~~~~--~~~~~~~~~~~~~~~-~V~~~~~~~~---~~~v~~~-~~~~~~~~viva~G~~~~~~~~~~~~~~~-~~ 130 (190)
T d1trba1 59 LTGPLLMER--MHEHATKFETEIIFD-HINKVDLQNR---PFRLNGD-NGEYTCDALIIATGASARYHSPNTAIFEG-QL 130 (190)
T ss_dssp CBHHHHHHH--HHHHHHHTTCEEECC-CEEEEECSSS---SEEEEES-SCEEEEEEEEECCCEEECCEEESCGGGTT-TS
T ss_pred cchHHHHHH--HHHHHHhcCcEEecc-eeEEEecCCC---cEEEEEe-eeeEeeeeeeeecceeeeeecccceeecc-eE
Confidence 000000000 112224477888765 6788777653 3455544 45789999999999876432 03332 24
Q ss_pred eecCCCceEecc-----ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhc
Q psy1545 287 ELAPDCGIGVNE-----LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMV 345 (454)
Q Consensus 287 ~~~~~g~i~vd~-----~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 345 (454)
+++ +|+|.+|+ .++|++|+|||+|||+... .+.+..|..+|..||.++.
T Consensus 131 e~~-~g~i~~~~~~~~~~~~T~v~gV~aaGDv~~~~---------~~q~i~Aag~G~~AA~~a~ 184 (190)
T d1trba1 131 ELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHI---------YRQAITSAGTGCMAALDAE 184 (190)
T ss_dssp CEE-TTEECCCCSSSSCTTBCSSTTEEECGGGGCSS---------SCCHHHHHHHHHHHHHHHH
T ss_pred ecC-CcEEEEecCCcccccccccCeEEEeEEecCcc---------eeEEEEEeccHHHHHHHHH
Confidence 554 68899984 4689999999999998754 3566778889999997654
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=1e-14 Score=115.73 Aligned_cols=107 Identities=18% Similarity=0.196 Sum_probs=83.7
Q ss_pred eccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhh
Q psy1545 120 RDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIF 197 (454)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~ 197 (454)
.+++++..+.+ .|++++|||||++|+|+|..|+ |++||+++++ ++++. +|+++++.+.+.+++
T Consensus 8 ~tsd~~~~l~~---~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~l~~-~D~~~~~~l~~~l~~---------- 72 (122)
T d1h6va2 8 ISSDDLFSLPY---CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG-FDQDMANKIGEHMEE---------- 72 (122)
T ss_dssp BCHHHHTTCSS---CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSSTT-SCHHHHHHHHHHHHH----------
T ss_pred EcchHHhCccc---CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hhhcc-CCHHHHHHHHHHHHH----------
Confidence 35666665554 3899999999999999999997 9999999875 67765 799999999998866
Q ss_pred hhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCC-CccceEEEecCC-----cEEecCEEEEee
Q psy1545 198 KRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSED-DTCNAYVKLTNG-----HTHACDIVVSAI 271 (454)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~~~~v~~~~g-----~~~~~D~vi~a~ 271 (454)
+||++++++.+++++..++ ......+.+.++ ..+++|.|++|+
T Consensus 73 -------------------------------~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~Ai 121 (122)
T d1h6va2 73 -------------------------------HGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAV 121 (122)
T ss_dssp -------------------------------TTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCC
T ss_pred -------------------------------CCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEe
Confidence 8999999999999875332 122345555432 356899999999
Q ss_pred c
Q psy1545 272 G 272 (454)
Q Consensus 272 G 272 (454)
|
T Consensus 122 G 122 (122)
T d1h6va2 122 G 122 (122)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.48 E-value=7.8e-14 Score=110.81 Aligned_cols=96 Identities=18% Similarity=0.232 Sum_probs=80.8
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCC
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPS 211 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (454)
++++++|||||++|+|+|..|+ |.+|+++++++++++ .+|+++++.+.+.+++
T Consensus 21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~-~~d~~~~~~~~~~l~~------------------------ 75 (121)
T d1mo9a2 21 PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-IKDNETRAYVLDRMKE------------------------ 75 (121)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-CCSHHHHHHHHHHHHH------------------------
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhc-ccccchhhhhhhhhhc------------------------
Confidence 4799999999999999999997 999999999999987 4899999998888865
Q ss_pred CCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEE---ecCCcEEecCEEEEeec
Q psy1545 212 LGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVK---LTNGHTHACDIVVSAIG 272 (454)
Q Consensus 212 l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~---~~~g~~~~~D~vi~a~G 272 (454)
+||++++++.+++++.+++ +....+. ..+++++++|+|++|+|
T Consensus 76 -----------------~gI~v~~~~~v~~i~~~~~-~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 76 -----------------QGMEIISGSNVTRIEEDAN-GRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp -----------------TTCEEESSCEEEEEEECTT-SBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred -----------------cccEEEcCCEEEEEEecCC-ceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 8999999999999998764 2222222 23457899999999998
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=6e-13 Score=113.80 Aligned_cols=163 Identities=12% Similarity=0.125 Sum_probs=112.4
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC--ccccc-------cCCcchhhhHHHhhccCCCChhhhhhhcccccC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKH--ISATF-------LDPGAAEFFQDSINKTNTAKPETIFKRMRYNTG 205 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~--~~~~~-------~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 205 (454)
.|+|||||++|+++|..+. |.+|++++++.. +.... +.......+...+
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 62 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGAL-------------------- 62 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHH--------------------
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHH--------------------
Confidence 4899999999999998885 999999986421 11000 0000001111111
Q ss_pred CCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCC
Q psy1545 206 GEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTP 285 (454)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~ 285 (454)
....++.+++......+..+...............+..++.++.++.++|..+... .....+
T Consensus 63 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~ 124 (184)
T d1fl2a1 63 -----------------KVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNT-NWLEGA 124 (184)
T ss_dssp -----------------HHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESC-GGGTTT
T ss_pred -----------------HHHhhheeceeeccceeeeecccccccceeeeeeecceeeeccccccccccccccc-cccccc
Confidence 12224467888888888887765432334445556667899999999999877665 445555
Q ss_pred ceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 286 FELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 286 l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
+.....|.|.+|..++|+.|+||++|||...+ .+....|..+|..||.++..
T Consensus 125 ~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~~---------~~~~vva~g~G~~aA~~~~~ 176 (184)
T d1fl2a1 125 VERNRMGEIIIDAKCETNVKGVFAAGDCTTVP---------YKQIIIATGEGAKASLSAFD 176 (184)
T ss_dssp SCBCTTSCBCCCTTCBCSSTTEEECSTTBSCS---------SCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccceeccCCceeeeCCCEEEEeeecCcc---------cCCcEEEEECcHHHHHHHHH
Confidence 66677899999999999999999999998754 23456688888888877664
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.43 E-value=6e-14 Score=116.83 Aligned_cols=143 Identities=13% Similarity=0.040 Sum_probs=107.8
Q ss_pred ecCCCCCCC-CCC---CceeeeeccchHHHHHHHhhcCCeEEEE--cCchhHHHHHHHhc--CCcEEEEEeCCCcccccc
Q psy1545 102 CTGASPRKI-WYS---PHVITIRDTDSVAVLQEKLKSAKKIVVI--GNGGIATELVHELS--NVDIVWVVKDKHISATFL 173 (454)
Q Consensus 102 AtG~~p~~~-~~~---~~~~~~~~~~~~~~l~~~~~~~~~vvVv--G~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~ 173 (454)
|||+.|..| |+| ....++.+++++...... .+++++|+ |||++|+|+|..|+ |++||++++.+++++. +
T Consensus 4 atG~~~~~~~pipG~~~~~~~v~t~~d~l~~~~~--~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~-~ 80 (156)
T d1djqa2 4 TDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKK--IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM-H 80 (156)
T ss_dssp SSCCCTTTSSCCTTCCTTSTTEECHHHHHHTCSC--CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH-H
T ss_pred CCCCCCCCCCCCCCccCCCCEEECHHHHhcCccc--cCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc-c
Confidence 799998876 677 111234477887665433 35556655 99999999999997 9999999999988875 6
Q ss_pred CCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceE
Q psy1545 174 DPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAY 253 (454)
Q Consensus 174 d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~ 253 (454)
+++....+.+.+.+ .||++++++.+.+++.++
T Consensus 81 ~~~~~~~~~~~l~~-----------------------------------------~GV~i~~~~~v~~i~~~~------- 112 (156)
T d1djqa2 81 FTLEYPNMMRRLHE-----------------------------------------LHVEELGDHFCSRIEPGR------- 112 (156)
T ss_dssp HTTCHHHHHHHHHH-----------------------------------------TTCEEEETEEEEEEETTE-------
T ss_pred chhHHHHHHHHHhh-----------------------------------------ccceEEeccEEEEecCcc-------
Confidence 88888888888765 899999999999998764
Q ss_pred EEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEecc
Q psy1545 254 VKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNE 298 (454)
Q Consensus 254 v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~ 298 (454)
+.+.+.....++.+..++|..|+.. .....+++. ++.+.++.
T Consensus 113 v~l~~~~~~~~~~v~~~~g~~~~~~-~~~~~~le~--D~vilvtg 154 (156)
T d1djqa2 113 MEIYNIWGDGSKRTYRGPGVSPRDA-NTSHRWIEF--DSLVLVTG 154 (156)
T ss_dssp EEEEETTCSCSCCCCCCTTSCSSCC-CCCCEEEEC--SEEEEESC
T ss_pred eEEEeeeccccceeeeeeEEEeccc-CCccCcEec--ceEEEEec
Confidence 4444554556788889999999887 666665655 45566553
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=2.6e-14 Score=120.61 Aligned_cols=118 Identities=16% Similarity=0.179 Sum_probs=82.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccc-cchhhhHHHHHhc-CcEEEcceEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSD-ITVEETDANKFEG-LCTVIVDTVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~i~~~~~~v~~i~ 80 (454)
++|+|||||||||+||..|+++ |++|+|+|+.+.+++..++......... .++...+.+.+.+ +++++.++.
T Consensus 44 k~V~IIGaGPAGL~AA~~la~~--G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~---- 117 (179)
T d1ps9a3 44 KNLAVVGAGPAGLAFAINAAAR--GHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHT---- 117 (179)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCC----
T ss_pred cEEEEECccHHHHHHHHHHHhh--ccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCE----
Confidence 6899999999999999999998 9999999999988876654322222211 2233333444444 898865421
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCCCCCCCCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHH
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASPRKIWYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATEL 150 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~ 150 (454)
|+. + ....||.+|+|||+.|+.++++ ....+++++|+|+|.+++++
T Consensus 118 -----Vt~-~-~~~~~d~vilAtG~~~~~~~~p-----------------g~~~g~~v~vigggd~a~~~ 163 (179)
T d1ps9a3 118 -----VTA-D-QLQAFDETILASGIPNRALAQP-----------------LIDSGKTVHLIGGCDVAMEL 163 (179)
T ss_dssp -----CCS-S-SSCCSSEEEECCCEECCTTHHH-----------------HHTTTCCEEECGGGTCCSSC
T ss_pred -----Ecc-c-ccccceeEEEeecCCCcccccc-----------------hhccCCEEEEECCcHhhhhc
Confidence 111 1 2357999999999987665432 01138999999999988775
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.39 E-value=3.5e-13 Score=115.00 Aligned_cols=111 Identities=15% Similarity=0.189 Sum_probs=81.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
.+|||||||++|+.+|..|+++++..+|+|||+++.+......+..................+.. ++.+..+++..++.
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 82 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGIDP 82 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCEEECCT
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeeeEeeee
Confidence 57999999999999999999997778999999998654332222111111111111111223334 88888899999999
Q ss_pred cccEEEeccCcEEEecEEEEecCCCCCCCCCC
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGASPRKIWYS 113 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~ 113 (454)
..+.+.+.+++.++||+||+|||.+|+.+.++
T Consensus 83 ~~~~~~~~~~~~i~~D~li~atG~~~~~~~i~ 114 (186)
T d1fcda1 83 DKKLVKTAGGAEFGYDRCVVAPGIELIYDKIE 114 (186)
T ss_dssp TTTEEEETTSCEEECSEEEECCCEEECCTTST
T ss_pred ccceeecccceeeccceEEEEeccccchhhhh
Confidence 88889888999999999999999988876655
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=3.2e-13 Score=118.45 Aligned_cols=110 Identities=24% Similarity=0.345 Sum_probs=80.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccc--------------------------c
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSD--------------------------I 55 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~--------------------------~ 55 (454)
++++||||||++|+.+|..|++.++..+|++|+++++..+ .++.++..+.. .
T Consensus 4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py--~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (213)
T d1m6ia1 4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPY--MRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPP 81 (213)
T ss_dssp EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCB--CSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCG
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCc--cccccceecccccCchhhhhhhhhhcccchhhhhcCCh
Confidence 4689999999999999999999988889999999877642 33332221100 0
Q ss_pred c--hhhhHHHHHhc-CcEEEcc-eEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC
Q psy1545 56 T--VEETDANKFEG-LCTVIVD-TVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS 113 (454)
Q Consensus 56 ~--~~~~~~~~~~~-~i~~~~~-~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~ 113 (454)
+ ........+.+ +|+++.+ +|+.++.+.+.|++++|+++.||+||+|||+.|..++++
T Consensus 82 ~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~l~ 143 (213)
T d1m6ia1 82 SFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVELA 143 (213)
T ss_dssp GGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCTTH
T ss_pred hhhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhhhh
Confidence 0 00111122233 8998765 899999999999999999999999999999987665554
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.34 E-value=4.1e-12 Score=114.42 Aligned_cols=115 Identities=16% Similarity=0.148 Sum_probs=71.8
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc--------cccCCCCceec-----CCCc
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN--------IQVHGTPFELA-----PDCG 293 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~--------~~~~~~~l~~~-----~~g~ 293 (454)
++.||++++++.|++++..++......+...++.++.||.||+|+|-.+... .+++..++.+- .-|+
T Consensus 120 ~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~~i~~~~~~~~gg 199 (253)
T d2gqfa1 120 DKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRAVTMGG 199 (253)
T ss_dssp HHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEEEEEE
T ss_pred HHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcccccccCCCchHHHHHHhccccccccccccCCC
Confidence 3489999999999999875542222334556778899999999999765432 02222222220 1233
Q ss_pred eEe---c-ccccc-ccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 294 IGV---N-ELMQT-SISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 294 i~v---d-~~~~t-~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
+.+ | ..|+. .+|++|.+|.+....-...+ -..+.|...|..|+++|..
T Consensus 200 v~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg-----~n~~~a~~s~~~~~~~~~~ 252 (253)
T d2gqfa1 200 VDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGG-----YNFQWAWSSAYACALSISR 252 (253)
T ss_dssp ECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTT-----HHHHHHHHHHHHHHHHHHT
T ss_pred CcccccCccchhhhcCCCcEEeeeEEEeeeecCC-----EehhhhHhHHHHHHHHHhc
Confidence 433 3 24663 57999999988764211111 1234688889999988764
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.31 E-value=4.3e-12 Score=114.03 Aligned_cols=105 Identities=17% Similarity=0.296 Sum_probs=70.3
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc--------ccc----------ccc---c--------
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK--------TVP----------VTK---L-------- 51 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~--------~~~----------~~~---~-------- 51 (454)
|+|||+|||||++|++||+.|++. |.+|+|||+++..+.... ... ... .
T Consensus 1 M~yDViIIGaG~aGl~aA~~la~~--G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (251)
T d2i0za1 1 MHYDVIVIGGGPSGLMAAIGAAEE--GANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIF 78 (251)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhh
Confidence 899999999999999999999998 999999999875431100 000 000 0
Q ss_pred -------------cc----c-----------cchhhhHHHHHhc-CcEEEcc-eEEEEeCccc---EEEeccCcEEEecE
Q psy1545 52 -------------LS----D-----------ITVEETDANKFEG-LCTVIVD-TVAAIDPRVN---CVITEKQNRIKYKT 98 (454)
Q Consensus 52 -------------~~----~-----------~~~~~~~~~~~~~-~i~~~~~-~v~~i~~~~~---~v~~~~g~~i~~d~ 98 (454)
.. . .++.....+.+.+ +++++.+ +|+.+..++. .|.+++++.+++|+
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~ 158 (251)
T d2i0za1 79 NNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNH 158 (251)
T ss_dssp CHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSC
T ss_pred hhHHHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCe
Confidence 00 0 0000111223333 8998754 8888875443 36677889999999
Q ss_pred EEEecCCCC
Q psy1545 99 LCICTGASP 107 (454)
Q Consensus 99 lviAtG~~p 107 (454)
||+|||+..
T Consensus 159 vI~AtGg~S 167 (251)
T d2i0za1 159 VVIAVGGKS 167 (251)
T ss_dssp EEECCCCSS
T ss_pred EEEccCCcc
Confidence 999999753
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=99.21 E-value=2.9e-12 Score=118.55 Aligned_cols=104 Identities=9% Similarity=0.023 Sum_probs=65.7
Q ss_pred CCceEEEeCceEEEEEcCCCCccceEEEec-CC--cEEecCEEEEeeccCcCcccccCCCCce-------ecCCCc---e
Q psy1545 228 DTKITIEYSCEVERIVDSEDDTCNAYVKLT-NG--HTHACDIVVSAIGVVPNSNIQVHGTPFE-------LAPDCG---I 294 (454)
Q Consensus 228 ~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~-~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~-------~~~~g~---i 294 (454)
+.|+++++++.|++|+.+++ .+++.+. +| +++++|.||+|+|...... ++....-. +...|. +
T Consensus 231 ~~g~~i~~~~~V~~I~~~~~---~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~-Ll~~~~~~~~~~~~~~~~~~~~~~~ 306 (347)
T d2ivda1 231 SLGDAAHVGARVEGLAREDG---GWRLIIEEHGRRAELSVAQVVLAAPAHATAK-LLRPLDDALAALVAGIYNLGHLERV 306 (347)
T ss_dssp HHGGGEESSEEEEEEECC-----CCEEEEEETTEEEEEECSEEEECSCHHHHHH-HHTTTCHHHHHHHHTCCBTTHHHHH
T ss_pred HhhcccccCCEEEEEEEeCC---eEEEEEEcCCeEEEEECCEEEECCCHHHHHH-hccCCCHHHHHHhhcceecCcccce
Confidence 36899999999999988764 3444443 33 5799999999998643333 33322111 011221 1
Q ss_pred EeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 295 GVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 295 ~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
...+...++.|++|++||...+. ....++++|+.+|+.|++
T Consensus 307 ~~~~~~~~~~p~~~~~G~~~~g~-----------~~~~~~~~g~~~a~~~~a 347 (347)
T d2ivda1 307 AAIDAALQRLPGLHLIGNAYKGV-----------GLNDCIRNAAQLADALVA 347 (347)
T ss_dssp HHHHHHHHTSTTEEECSTTTSCC-----------SHHHHHHHHHHHHHHHCC
T ss_pred ecccccccCCCCEEEecccccCC-----------CHHHHHHHHHHHHHHhhC
Confidence 11223347899999999986532 234689999999998863
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=99.20 E-value=4.3e-10 Score=104.63 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=35.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
.+||||||+|++|++||+.|++. |.+|+|||+.+..++.
T Consensus 23 t~DVvVIG~G~aGl~aA~~la~~--G~~V~llEk~~~~gG~ 61 (322)
T d1d4ca2 23 TTDVVIIGSGGAGLAAAVSARDA--GAKVILLEKEPIPGGN 61 (322)
T ss_dssp ECSEEEECSSHHHHHHHHHHHTT--TCCEEEECSSSSSCTT
T ss_pred cceEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCCCCc
Confidence 36999999999999999999998 9999999999876543
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.19 E-value=1.6e-12 Score=120.73 Aligned_cols=109 Identities=11% Similarity=0.096 Sum_probs=68.5
Q ss_pred CceEEEeCceEEEEEcCCCCcc---ceEEEec-----CCcEEecCEEEEeeccCcCcc------------cccCCCCcee
Q psy1545 229 TKITIEYSCEVERIVDSEDDTC---NAYVKLT-----NGHTHACDIVVSAIGVVPNSN------------IQVHGTPFEL 288 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~---~~~v~~~-----~g~~~~~D~vi~a~G~~p~~~------------~~~~~~~l~~ 288 (454)
.+.++++++.|++|....++.. ...+... +++++++|.||+|++...-.. ..+... ...
T Consensus 242 ~~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~-~~~ 320 (373)
T d1seza1 242 REDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEV-YGH 320 (373)
T ss_dssp CTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCC-CCT
T ss_pred ccceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccc-ccc
Confidence 3677889999999875442111 1122221 236789999999987532111 011110 001
Q ss_pred cCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 289 APDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 289 ~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
+.++.+.+++.++|+.|+||++||+..++ ....|+.+|+.||+.|...++
T Consensus 321 ~~~~~~~~~~~~~t~~pglf~aGd~~~g~-----------~~~~A~~~G~~aA~~i~~~L~ 370 (373)
T d1seza1 321 NYDSVLDAIDKMEKNLPGLFYAGNHRGGL-----------SVGKALSSGCNAADLVISYLE 370 (373)
T ss_dssp THHHHHHHHHHHHHHSTTEEECCSSSSCS-----------SHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCcEeecccccCCCCCCEEEEecCCCch-----------hHHHHHHHHHHHHHHHHHHHh
Confidence 11233555677899999999999998643 456799999999999987543
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.18 E-value=6e-12 Score=107.40 Aligned_cols=108 Identities=22% Similarity=0.291 Sum_probs=75.9
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhh-HHHHHhc-CcEEEcc-eEE
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEET-DANKFEG-LCTVIVD-TVA 77 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~i~~~~~-~v~ 77 (454)
|+.+|+|||||++|+.+|..|++.+...++++++++.... +.++.++..+........ ....+.. +++++.+ ++.
T Consensus 2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 79 (183)
T d1d7ya1 2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP--YDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQ 79 (183)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC--BCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEE
T ss_pred CCCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccc--hhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccc
Confidence 7889999999999999999999995556677776665432 233332222211100000 0111223 8888765 899
Q ss_pred EEeCcccEEEeccCcEEEecEEEEecCCCCCCC
Q psy1545 78 AIDPRVNCVITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 78 ~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
.++.+...+.+.+|+++.||.+++|+|..|+..
T Consensus 80 ~i~~~~~~~~~~~g~~~~~D~vi~a~G~~p~~~ 112 (183)
T d1d7ya1 80 SFDPQAHTVALSDGRTLPYGTLVLATGAAPRAV 112 (183)
T ss_dssp EEETTTTEEEETTSCEEECSEEEECCCEEECCE
T ss_pred ccccccceeEecCCcEeeeeeEEEEEEEEcccc
Confidence 999999999999999999999999999988653
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=99.16 E-value=5.5e-11 Score=103.27 Aligned_cols=104 Identities=19% Similarity=0.114 Sum_probs=70.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc-ccccccccccccc-------------ccccchhhhHHHHHhc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI-VKAVTKTVPVTKL-------------LSDITVEETDANKFEG 67 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~-~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 67 (454)
.|||||||||+||++||..++|. +.+++||+.+.. .+.....+..... ...+.+..+..+.+..
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~--G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~ 79 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQK--GVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEG 79 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEECcCHHHHHHHHHHHHC--CCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhh
Confidence 48999999999999999999999 999999998632 2221111111100 0001122222233333
Q ss_pred --CcEEEcceEEEEeCccc---EEEeccCcEEEecEEEEecCCCC
Q psy1545 68 --LCTVIVDTVAAIDPRVN---CVITEKQNRIKYKTLCICTGASP 107 (454)
Q Consensus 68 --~i~~~~~~v~~i~~~~~---~v~~~~g~~i~~d~lviAtG~~p 107 (454)
+++++.++|..+..++. .|.+.+|.++.++.||||||.--
T Consensus 80 ~~nL~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL 124 (230)
T d2cula1 80 LRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL 124 (230)
T ss_dssp CTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred hcCHHHHhccceeeEecccceeeEEeccccEEEEeEEEEccCcce
Confidence 89999998888755443 35677898999999999999743
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=99.15 E-value=1.3e-12 Score=118.92 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=75.0
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCccc---ccCCCC----ceecCCCceEec--
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNI---QVHGTP----FELAPDCGIGVN-- 297 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~---~~~~~~----l~~~~~g~i~vd-- 297 (454)
+..+..+..++.+..+...++ .+.+.+++|+.+++|.++.+......... +....+ ..++..+...++
T Consensus 221 ~~~~~~i~~~~~v~~i~~~~~---~v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~~~ 297 (347)
T d1b5qa1 221 KIVDPRLQLNKVVREIKYSPG---GVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRY 297 (347)
T ss_dssp CBCCTTEESSCCEEEEEECSS---CEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCCHH
T ss_pred hhcccccccccccccccccCc---cEEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCcccccc
Confidence 456788999999999987763 57789999999999999998764321110 111110 001222333333
Q ss_pred --cccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 298 --ELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 298 --~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
+.++|+.++||++||++.... +...+.|+.+|+.||+.|++.+
T Consensus 298 ~~~~~~~~~~~v~~~GD~~~~~~--------~~~~~gA~~sG~~aA~~l~~~~ 342 (347)
T d1b5qa1 298 EYDQLRAPVGRVYFTGEHTSEHY--------NGYVHGAYLSGIDSAEILINCA 342 (347)
T ss_dssp HHHHHHCCBTTEEECSGGGCSSC--------TTSHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcccccCCEEEEEccccCcC--------CCHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999986431 2356778999999999988643
|
| >d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.15 E-value=2.3e-11 Score=95.80 Aligned_cols=87 Identities=20% Similarity=0.291 Sum_probs=67.3
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEEe------------ecCCccEEEEEE--ECCeEEEEEEEcCCc-
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLR------------VTRGEEYIKLVM--KDGRMQGAVLIGETE- 420 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~------------~~~~~~~~k~~~--~~~~i~G~~~~g~~~- 420 (454)
.+|..+|+.| +++.||+++.++...+.+.... .....||+|+++ ++++|+|+|++|+..
T Consensus 3 ~iP~~vft~P------eiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~d~~~~~ilGa~ivG~~A~ 76 (123)
T d1v59a3 3 NIPSVMYSHP------EVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAG 76 (123)
T ss_dssp SCCEEECSSS------EEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHH
T ss_pred CCCEEeecCC------ccEEEECCHHHHHhcccCceEEEEecccccchhccCCCcEEEEEEEECCCCEEEEEEEEchHHH
Confidence 4678888888 9999999987765433322211 123578999999 479999999999984
Q ss_pred -hHHHHHHHHhcCCCcchhhhhcc-CCCCC
Q psy1545 421 -IEEMCENLILNQLDLTDIADDLL-NPNID 448 (454)
Q Consensus 421 -~~~~~~~~i~~~~~~~~~~~~~~-~~~~~ 448 (454)
.++.++.+|++++|++++.+..+ ||+++
T Consensus 77 elI~~~alai~~~~t~~~l~~~i~~hPT~s 106 (123)
T d1v59a3 77 EMIAEAGLALEYGASAEDVARVCHAHPTLS 106 (123)
T ss_dssp HHHHHHHHHHHTTCBHHHHHTSCCCTTCTT
T ss_pred HHHHHHHHHHHcCCcHHHHHhcccCCCcHH
Confidence 68999999999999999987765 66553
|
| >d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.12 E-value=2.4e-11 Score=95.92 Aligned_cols=86 Identities=15% Similarity=0.227 Sum_probs=66.5
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEEe------------ecCCccEEEEEE--ECCeEEEEEEEcCC--
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLR------------VTRGEEYIKLVM--KDGRMQGAVLIGET-- 419 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~------------~~~~~~~~k~~~--~~~~i~G~~~~g~~-- 419 (454)
.+|..+|+.| +++.||+++.+++..+.+.... .....||+|+++ ++++|+|+|++|+.
T Consensus 3 ~vP~~vft~P------eiA~VGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~t~~ILGa~ivg~~A~ 76 (124)
T d3lada3 3 LIPAVIYTHP------EIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAA 76 (124)
T ss_dssp CCCEEECSSS------EEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHH
T ss_pred cCCeEecCcC------ceeEeehhHHHHhhcccccEEEEEECccCcchhhcCCCCeEEEEEEECCCCEEEEEEEEcccHH
Confidence 4678888888 9999999987765443322211 124578999999 47999999999998
Q ss_pred chHHHHHHHHhcCCCcchhhhhcc-CCCC
Q psy1545 420 EIEEMCENLILNQLDLTDIADDLL-NPNI 447 (454)
Q Consensus 420 ~~~~~~~~~i~~~~~~~~~~~~~~-~~~~ 447 (454)
+.++.+..+|++++|++++.+..+ ||++
T Consensus 77 elI~~~~~ai~~~~t~~~l~~~i~~hPT~ 105 (124)
T d3lada3 77 ELVQQGAIAMEFGTSAEDLGMMVFAHPAL 105 (124)
T ss_dssp HHHHHHHHHHHHTCBHHHHHTSCCCSSCS
T ss_pred HHHHHHHHHHHcCCCHHHHHhCCccCCCH
Confidence 367999999999999999987654 5554
|
| >d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.12 E-value=3.8e-11 Score=94.51 Aligned_cols=86 Identities=16% Similarity=0.232 Sum_probs=66.3
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEEe------------ecCCccEEEEEE--ECCeEEEEEEEcCC--
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLR------------VTRGEEYIKLVM--KDGRMQGAVLIGET-- 419 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~------------~~~~~~~~k~~~--~~~~i~G~~~~g~~-- 419 (454)
.+|..+|+.| +++.||+++.++...+.+.... .....||+|+++ ++++|+|+|++|++
T Consensus 3 ~iP~~vft~P------eiA~vGlte~~A~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~Klv~d~~~~~ilG~~ivG~~A~ 76 (123)
T d1dxla3 3 KVPGVVYTNP------EVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAG 76 (123)
T ss_dssp SCCEEECSSS------EEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHH
T ss_pred CCCEEeecCC------ceEEEECCHHHHHHcCCCEEEEEEeccccchhhhcCCCcceEEEEEECCCCEEEEEEEehhhHH
Confidence 4677888888 9999999988775444332211 124678999999 47999999999998
Q ss_pred chHHHHHHHHhcCCCcchhhhhcc-CCCC
Q psy1545 420 EIEEMCENLILNQLDLTDIADDLL-NPNI 447 (454)
Q Consensus 420 ~~~~~~~~~i~~~~~~~~~~~~~~-~~~~ 447 (454)
+.++.+..+|++++|++|+.+..+ ||++
T Consensus 77 elI~~~~~ai~~~~t~~~l~~~i~~hPT~ 105 (123)
T d1dxla3 77 ELIHEAAIALQYDASSEDIARVCHAHPTM 105 (123)
T ss_dssp HHHHHHHHHHHTTCBHHHHHTSCCCSSCT
T ss_pred HHHHHHHHHHHcCCcHHHHhhCCCCCCCH
Confidence 468999999999999999977654 5543
|
| >d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.12 E-value=4.6e-11 Score=92.81 Aligned_cols=85 Identities=21% Similarity=0.395 Sum_probs=66.2
Q ss_pred cceeeeeeeeeecCeEEEEeecccCCcCCCCceEEEe------------ecCCccEEEEEE--ECCeEEEEEEEcCC--c
Q psy1545 357 FSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLR------------VTRGEEYIKLVM--KDGRMQGAVLIGET--E 420 (454)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~------------~~~~~~~~k~~~--~~~~i~G~~~~g~~--~ 420 (454)
+|..+|+.| +++.||+++.+++..+.+.... .....||+|+++ ++++|+|+|++|+. +
T Consensus 2 vP~~vft~P------eiA~VGlte~ea~~~g~~~~v~~~~~~~~~ra~~~~~~~G~vKli~~~~~~~iLG~~ivg~~A~e 75 (115)
T d1ebda3 2 IPAVVFSDP------ECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASD 75 (115)
T ss_dssp CCEEECSSS------CEEEEECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHH
T ss_pred cCeEecCCC------ceEEEeCCHHHHhhhhhhhhccceecccceeeeecCCCcEEEEEEEeCCcceEEEEEEEcCCHHH
Confidence 577888888 9999999998776444322211 123678999999 47999999999998 4
Q ss_pred hHHHHHHHHhcCCCcchhhhhcc-CCCC
Q psy1545 421 IEEMCENLILNQLDLTDIADDLL-NPNI 447 (454)
Q Consensus 421 ~~~~~~~~i~~~~~~~~~~~~~~-~~~~ 447 (454)
.++.+..+|++++|+++|.+..+ +|++
T Consensus 76 lI~~~~~ai~~~~t~~~l~~~i~~hPT~ 103 (115)
T d1ebda3 76 MIAELGLAIEAGMTAEDIALTIHAHPTL 103 (115)
T ss_dssp HHHHHHHHHHHTCBHHHHHHSCCCTTSS
T ss_pred HHHHHHHHHHcCCCHHHHhhCCCCCCCH
Confidence 68999999999999999977654 5554
|
| >d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.12 E-value=4.7e-11 Score=93.89 Aligned_cols=86 Identities=15% Similarity=0.283 Sum_probs=66.7
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEEe------------ecCCccEEEEEE--ECCeEEEEEEEcCC--
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLR------------VTRGEEYIKLVM--KDGRMQGAVLIGET-- 419 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~------------~~~~~~~~k~~~--~~~~i~G~~~~g~~-- 419 (454)
.+|..+|+.| +++.||+++.+++..+.+.... .....+|+|+++ ++++|+|+|++|+.
T Consensus 3 ~iP~vvft~P------eiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~g~vklv~d~~t~~ILG~~ivG~~A~ 76 (123)
T d1lvla3 3 AIAAVCFTDP------EVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVS 76 (123)
T ss_dssp CCCEEECSSS------EEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGG
T ss_pred CCCEEEeCCC------ccEEEECCHHHHhhcchhhhcceeeccccccceecCcchhheeeeeecccccceEEEEEeCchh
Confidence 4678889888 9999999998775444332211 123568999999 47999999999988
Q ss_pred chHHHHHHHHhcCCCcchhhhhcc-CCCC
Q psy1545 420 EIEEMCENLILNQLDLTDIADDLL-NPNI 447 (454)
Q Consensus 420 ~~~~~~~~~i~~~~~~~~~~~~~~-~~~~ 447 (454)
+.++.++.+|++++|++|+.+..+ +|++
T Consensus 77 elI~~~~lai~~~~t~~~l~~~i~~hPT~ 105 (123)
T d1lvla3 77 ELSTAFAQSLEMGACLEDVAGTIHAHPTL 105 (123)
T ss_dssp GHHHHHHHHHHHTCBHHHHHTSCCCTTCT
T ss_pred hHHHHHHHHHHcCCCHHHHhcCCCCCCCH
Confidence 468999999999999999977643 5554
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.11 E-value=1.2e-10 Score=100.42 Aligned_cols=108 Identities=22% Similarity=0.375 Sum_probs=75.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccc--cccccccc-chhhhHHHHHhc-CcEEEc-ceEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVP--VTKLLSDI-TVEETDANKFEG-LCTVIV-DTVA 77 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~-~i~~~~-~~v~ 77 (454)
++|+|||||++|+.+|..|++++++.+|+++++++...+.....+ +....... .+.....+.+.+ +++++. .+|+
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~ 80 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT 80 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeecee
Confidence 369999999999999999999988889999999877643211111 11111111 122223445555 999864 5999
Q ss_pred EEeCcccEEEec---cCc--EEEecEEEEecCCCCCCC
Q psy1545 78 AIDPRVNCVITE---KQN--RIKYKTLCICTGASPRKI 110 (454)
Q Consensus 78 ~i~~~~~~v~~~---~g~--~i~~d~lviAtG~~p~~~ 110 (454)
.++++.+.|++. +|+ .+.||.+|+|+|+.|..+
T Consensus 81 ~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~ 118 (198)
T d1nhpa1 81 AIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL 118 (198)
T ss_dssp EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred eEeeccccceeeecccccccccccceeeEeecceeecc
Confidence 999988877643 333 588999999999877543
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=3.6e-10 Score=88.14 Aligned_cols=90 Identities=16% Similarity=0.064 Sum_probs=70.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|+++ |.+|+|+++.+... +.+ +.+......+.+.+ +++++.+ .++.+.
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~--G~~Vtlve~~~~~l-----~~~-----d~~~~~~~~~~l~~~GV~~~~~~~v~~i~ 89 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGL--GAKTHLFEMFDAPL-----PSF-----DPMISETLVEVMNAEGPQLHTNAIPKAVV 89 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSS-----TTS-----CHHHHHHHHHHHHHHSCEEECSCCEEEEE
T ss_pred CEEEEECCChhhHHHHHHhhcc--ccEEEEEeecchhh-----hhc-----chhhHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence 4799999999999999999998 89999999987642 111 12344455566666 9999865 888876
Q ss_pred Ccc---cEEEeccCcEEEecEEEEecC
Q psy1545 81 PRV---NCVITEKQNRIKYKTLCICTG 104 (454)
Q Consensus 81 ~~~---~~v~~~~g~~i~~d~lviAtG 104 (454)
.+. ..+.+++|+++.+|.+++|||
T Consensus 90 ~~~~~~~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 90 KNTDGSLTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp ECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred EcCCcEEEEEECCCCEEEcCEEEEecC
Confidence 543 367788899999999999998
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.09 E-value=4.2e-10 Score=88.31 Aligned_cols=89 Identities=18% Similarity=0.258 Sum_probs=69.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|+++ |.+|+++++++.+- +. ..+........+.+.+ +|+++.+ +++.+.
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~--g~~Vtli~~~~~~l--------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~~~ 99 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTA--GVHVSLVETQPRLM--------SR-AAPATLADFVARYHAAQGVDLRFERSVTGSV 99 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSSTT--------TT-TSCHHHHHHHHHHHHTTTCEEEESCCEEEEE
T ss_pred CeEEEECcchhHHHHHHHhhcc--cceEEEEeeccccc--------cc-cCCHHHHHHHHHHHHHCCcEEEeCCEEEEEe
Confidence 4799999999999999999998 99999999988641 11 1112333444556666 9999755 888776
Q ss_pred CcccEEEeccCcEEEecEEEEecC
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTG 104 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG 104 (454)
.. .+.+.+|+++.+|.+|+|+|
T Consensus 100 ~~--~v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 100 DG--VVLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp TT--EEEETTSCEEECSEEEECSC
T ss_pred CC--EEEECCCCEEECCEEEEeeC
Confidence 54 57888999999999999998
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.09 E-value=3.5e-09 Score=98.12 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=35.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
.+||||||+|++|++||++|++. |.+|+|||+.+..++.
T Consensus 19 ~~DVvVIGaG~aGl~AA~~aa~~--G~~V~vlEK~~~~gG~ 57 (317)
T d1qo8a2 19 TTQVLVVGAGSAGFNASLAAKKA--GANVILVDKAPFSGGN 57 (317)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHH--TCCEEEECSSSSSCTT
T ss_pred ccCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCCCCc
Confidence 37999999999999999999999 9999999999876543
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=1.8e-10 Score=98.62 Aligned_cols=104 Identities=22% Similarity=0.161 Sum_probs=73.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccc------ccccccccchhhhHHHHHhc-CcEEEcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVP------VTKLLSDITVEETDANKFEG-LCTVIVD 74 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~i~~~~~ 74 (454)
++||+||||||+|++||..|++. +.+++|||+.+..+.+..... ++.......+......+... ++.+..+
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~--g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARA--NLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD 82 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTT--TCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHHc--CCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc
Confidence 46899999999999999999998 999999999876554333221 12222223333334444444 8888888
Q ss_pred eEEEEeCcccE--EEeccCcEEEecEEEEecCCCCC
Q psy1545 75 TVAAIDPRVNC--VITEKQNRIKYKTLCICTGASPR 108 (454)
Q Consensus 75 ~v~~i~~~~~~--v~~~~g~~i~~d~lviAtG~~p~ 108 (454)
+|+.++..... +.. ....+..+.+++++|..|+
T Consensus 83 ~V~~~~~~~~~~~v~~-~~~~~~~~~viva~G~~~~ 117 (190)
T d1trba1 83 HINKVDLQNRPFRLNG-DNGEYTCDALIIATGASAR 117 (190)
T ss_dssp CEEEEECSSSSEEEEE-SSCEEEEEEEEECCCEEEC
T ss_pred eeEEEecCCCcEEEEE-eeeeEeeeeeeeecceeee
Confidence 89988876653 333 4568999999999998664
|
| >d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.08 E-value=5.6e-11 Score=94.12 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=66.9
Q ss_pred cceeeeeeeeeecCeEEEEeecccCCcCCCCceEEEe------------ecCCccEEEEEE--ECCeEEEEEEEcCC--c
Q psy1545 357 FSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLR------------VTRGEEYIKLVM--KDGRMQGAVLIGET--E 420 (454)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~------------~~~~~~~~k~~~--~~~~i~G~~~~g~~--~ 420 (454)
+|+.+||+| +++.||+++.+++..+.+.... .....+|+|+++ ++|+|||+|++|+. +
T Consensus 4 IP~~vft~P------eiA~VGlte~~A~~~g~~~~v~~~~~~~~~ra~~~~~~~g~~Kli~d~~~g~iLGa~ivG~~A~E 77 (128)
T d1ojta3 4 IPGVAYTSP------EVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGD 77 (128)
T ss_dssp CCEEECSSS------CEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHH
T ss_pred CCEeecCCC------ceeeeeccHHHHHHcCCCcccceeeccchhhHHhcCCccceEEEEEeCCCCeEEEEEEEhhhHHH
Confidence 678889888 8999999998775433322111 124578999999 47999999999998 4
Q ss_pred hHHHHHHHHhcCCCcchhhhhcc-CCCCC
Q psy1545 421 IEEMCENLILNQLDLTDIADDLL-NPNID 448 (454)
Q Consensus 421 ~~~~~~~~i~~~~~~~~~~~~~~-~~~~~ 448 (454)
.++.+..+|++++|++++.+..+ ||+++
T Consensus 78 lI~~~~lai~~~~t~~~l~~~i~~hPT~s 106 (128)
T d1ojta3 78 MIGEVCLAIEMGCDAADIGKTIHPHPTLG 106 (128)
T ss_dssp HHHHHHHHHHTTCBHHHHHTSCCCSSSST
T ss_pred HHHHHHHHHHcCCCHHHHhhCcCcCCCHH
Confidence 67999999999999999987764 66553
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.08 E-value=1.2e-10 Score=106.87 Aligned_cols=110 Identities=21% Similarity=0.161 Sum_probs=73.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc----------cc----------------cc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL----------LS----------------DI 55 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~----------~~----------------~~ 55 (454)
+.||+|||||++||++|++|++. |.+++|+|+++.+++.|....++.. .. ..
T Consensus 7 ~~dV~IIGAG~sGl~~a~~L~~~--G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~ 84 (298)
T d1w4xa1 7 EVDVLVVGAGFSGLYALYRLREL--GRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQ 84 (298)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBH
T ss_pred CCCEEEECccHHHHHHHHHHHhC--CCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCcc
Confidence 36999999999999999999998 8899999999888776543211100 00 00
Q ss_pred chhhhHHHHHhc--Cc--EE-EcceEEEEe--Ccc--cEEEeccCcEEEecEEEEecCC--CCCCCCCC
Q psy1545 56 TVEETDANKFEG--LC--TV-IVDTVAAID--PRV--NCVITEKQNRIKYKTLCICTGA--SPRKIWYS 113 (454)
Q Consensus 56 ~~~~~~~~~~~~--~i--~~-~~~~v~~i~--~~~--~~v~~~~g~~i~~d~lviAtG~--~p~~~~~~ 113 (454)
+....+++.+.+ ++ .+ +..+|+.+. ... ..|.+.++.++++|.||+|||. .|..|.++
T Consensus 85 ~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~ 153 (298)
T d1w4xa1 85 PEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALF 153 (298)
T ss_dssp HHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHHH
T ss_pred chHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCccc
Confidence 011122333332 44 23 355787775 322 3788888889999999999994 56665543
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.08 E-value=2.4e-12 Score=114.75 Aligned_cols=146 Identities=12% Similarity=0.065 Sum_probs=84.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcC-----CCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLH-----PGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTV 76 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~-----~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v 76 (454)
++|+|||||||||+||+.|++++ .+.+|+|+|+.+.+++.+.+...+.......+.......+.. +++++.+..
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 82 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNVV 82 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESCC
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEEE
Confidence 68999999999999999999982 236899999999998876553222212222233333344444 888765421
Q ss_pred EEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC----Cce----eeeec---cchHHHHHHHhhcCCeEEEEcCch
Q psy1545 77 AAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS----PHV----ITIRD---TDSVAVLQEKLKSAKKIVVIGNGG 145 (454)
Q Consensus 77 ~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~----~~~----~~~~~---~~~~~~l~~~~~~~~~vvVvG~G~ 145 (454)
+.. .+.. +.-...||.+++|||+.+..+..+ ... ..+.. .............+++.+|+|+|.
T Consensus 83 --v~~---~~~~-~~~~~~~~~v~~atGa~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vv~g~g~ 156 (239)
T d1lqta2 83 --VGE---HVQP-GELSERYDAVIYAVGAQSRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKK 156 (239)
T ss_dssp --BTT---TBCH-HHHHHHSSEEEECCCCCEECCCCTTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHH
T ss_pred --ecc---ccch-hhhhccccceeeecCCCccccccccccccccccchhhhhhhhccccccccceeecCCCEEEEeCCCc
Confidence 111 1111 111246999999999875544333 100 00000 000000000011367888899999
Q ss_pred hHHHHHHHh
Q psy1545 146 IATELVHEL 154 (454)
Q Consensus 146 ~g~e~a~~l 154 (454)
.+++++..+
T Consensus 157 ~a~d~a~~~ 165 (239)
T d1lqta2 157 DAQDTVDTL 165 (239)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 999988754
|
| >d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.07 E-value=6.8e-11 Score=92.23 Aligned_cols=86 Identities=14% Similarity=0.271 Sum_probs=65.2
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCCC--ceEEEe----------ecCCccEEEEEE--ECCeEEEEEEEcCC--
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLEND--YEILLR----------VTRGEEYIKLVM--KDGRMQGAVLIGET-- 419 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~--~~~~~~----------~~~~~~~~k~~~--~~~~i~G~~~~g~~-- 419 (454)
.+|..+|+.| +++.+|+++.+++..+ +..... .....||+|+++ ++++|+|+|++|++
T Consensus 3 ~iP~~vft~P------eiA~vGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~~~~ilGa~ivG~~A~ 76 (118)
T d1xdia2 3 TVAATVFTRP------EIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIAS 76 (118)
T ss_dssp GCEEEECSSS------EEEEEESCHHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHH
T ss_pred CCCEEecCCC------hheeehhhHHHHHhCcccceeeeecccchhhhhhcccchhheEEEEecCCCceEEEEEEcCcHH
Confidence 3677888888 9999999987765333 322211 123568999999 47999999999998
Q ss_pred chHHHHHHHHhcCCCcchhhhhcc-CCCC
Q psy1545 420 EIEEMCENLILNQLDLTDIADDLL-NPNI 447 (454)
Q Consensus 420 ~~~~~~~~~i~~~~~~~~~~~~~~-~~~~ 447 (454)
+.++.+..+|++++|++++.+..+ ||++
T Consensus 77 elI~~~~~ai~~~~t~~~l~~~i~~hPT~ 105 (118)
T d1xdia2 77 ELILPIAVAVQNRITVNELAQTLAVYPSL 105 (118)
T ss_dssp HHHHHHHHHHHHTCBHHHHHTSBCCSSST
T ss_pred HHHHHHHHHHHcCCCHHHHhhCCCCCCCH
Confidence 468999999999999999976543 4443
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=99.06 E-value=1.4e-09 Score=101.67 Aligned_cols=88 Identities=13% Similarity=0.075 Sum_probs=60.5
Q ss_pred CCceEEEeCceEEEEEcCCCCccceEEEe---cCC--cEEecCEEEEeeccCcCcc-----c---------ccCCCC-ce
Q psy1545 228 DTKITIEYSCEVERIVDSEDDTCNAYVKL---TNG--HTHACDIVVSAIGVVPNSN-----I---------QVHGTP-FE 287 (454)
Q Consensus 228 ~~gv~i~~~~~v~~i~~~~~~~~~~~v~~---~~g--~~~~~D~vi~a~G~~p~~~-----~---------~~~~~~-l~ 287 (454)
+.|++++.++.+.++..+++ ....+.. .+| ..+.++.||+|||--.... + ..-..| ..
T Consensus 170 ~~gv~i~~~~~~~~li~~~~--~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~~~~~~~G~~~ 247 (336)
T d2bs2a2 170 KLGVSIQDRKEAIALIHQDG--KCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALETGIAQ 247 (336)
T ss_dssp HHTCEEECSEEEEEEEEETT--EEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTSSSC
T ss_pred hccccccceeeeeecccccc--cccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhhhhhhhhhhhh
Confidence 37999999999988776552 2333333 456 4578999999997543210 0 011123 34
Q ss_pred ecCCCceEeccccccccCceeecCcccccC
Q psy1545 288 LAPDCGIGVNELMQTSISNVYAAGDVCTPS 317 (454)
Q Consensus 288 ~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~ 317 (454)
+..-++|.+|+..+|+.|++|++|+++...
T Consensus 248 l~~~~~iq~~~~~~t~~~gl~a~G~~~~~~ 277 (336)
T d2bs2a2 248 LGNMGGIRTDYRGEAKLKGLFSAGEAACWD 277 (336)
T ss_dssp EECCCEEECCTTSBCSSBTEEECGGGEECC
T ss_pred hccccceeechhhcccCCcceecccccccc
Confidence 556788999999999999999999987643
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.05 E-value=7.4e-10 Score=88.54 Aligned_cols=91 Identities=14% Similarity=0.182 Sum_probs=68.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. |.+|+++|+++.+-. ..+ +........+.+.+ +++++.+ +++.++
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~--g~~Vtvie~~~~~l~--------~~~-~~~~~~~~~~~~~~~GV~i~~~~~v~~i~ 104 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKA--NMHVTLLDTAARVLE--------RVT-APPVSAFYEHLHREAGVDIRTGTQVCGFE 104 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSTTT--------TTS-CHHHHHHHHHHHHHHTCEEECSCCEEEEE
T ss_pred CEEEEECCchHHHHHHHHHHhh--Ccceeeeeecccccc--------ccc-chhhhhhhhhcccccccEEEeCCeEEEEE
Confidence 4799999999999999999998 999999999886421 001 11222333445555 9999865 888886
Q ss_pred Ccc-----cEEEeccCcEEEecEEEEecC
Q psy1545 81 PRV-----NCVITEKQNRIKYKTLCICTG 104 (454)
Q Consensus 81 ~~~-----~~v~~~~g~~i~~d~lviAtG 104 (454)
... ..+.+++|+++.+|.+|+|+|
T Consensus 105 ~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 105 MSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp ECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred EeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 432 246788999999999999998
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.04 E-value=4.2e-11 Score=105.96 Aligned_cols=100 Identities=13% Similarity=0.125 Sum_probs=65.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
.+|+||||||||++||..|++.+.+++|+|+|+.+.+++...+...........+.......+.. ++++...... ..
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~ 79 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEV--GR 79 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCB--TT
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEe--Cc
Confidence 58999999999999999999887788999999999887655443322222223333444455555 8887654321 11
Q ss_pred cccEEEeccCcEEEecEEEEecCCCCC
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGASPR 108 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~p~ 108 (454)
+ +...+ -.-.||.+++|||+.+.
T Consensus 80 ~---~~~~~-l~~~~d~v~~a~Ga~~~ 102 (230)
T d1cjca2 80 D---VTVQE-LQDAYHAVVLSYGAEDK 102 (230)
T ss_dssp T---BCHHH-HHHHSSEEEECCCCCEE
T ss_pred c---ccHHH-HHhhhceEEEEeecccc
Confidence 1 11100 01259999999999643
|
| >d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.04 E-value=2e-10 Score=90.87 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=66.2
Q ss_pred eeeeeeeecCeEEEEeecccCCcCCCCc--eEEE-e--------ecCCccEEEEEE--ECCeEEEEEEEcCC---chHHH
Q psy1545 361 MFTHMTKFFGYKVILLGLFNGQTLENDY--EILL-R--------VTRGEEYIKLVM--KDGRMQGAVLIGET---EIEEM 424 (454)
Q Consensus 361 ~~~~~~~~~~~~~~~vG~~~~~~~~~~~--~~~~-~--------~~~~~~~~k~~~--~~~~i~G~~~~g~~---~~~~~ 424 (454)
+.+...+.|++++++||+++.+++..++ .... . .....+|+|+++ ++++|+|+|++|++ +.++.
T Consensus 3 ~gt~~~~vfd~eiasvGlte~eA~~~g~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlG~~ivG~~~a~e~I~~ 82 (126)
T d1nhpa3 3 QGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINA 82 (126)
T ss_dssp CCCEEEEETTEEEEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHH
T ss_pred ccCeEEeEcCccEEEecccHHHHHHCCCCEEEEEEecCcchhhcCCCcceeEEEEEECCCCCEEEEEEEechhHHHHHHH
Confidence 3455678889999999999988753332 2111 0 012458999999 47999999999964 36899
Q ss_pred HHHHHhcCCCcchhhhhc--cCCCCC
Q psy1545 425 CENLILNQLDLTDIADDL--LNPNID 448 (454)
Q Consensus 425 ~~~~i~~~~~~~~~~~~~--~~~~~~ 448 (454)
++.+|++++|++||.+.. +||+++
T Consensus 83 ~~~ai~~~~t~~dL~~~~~~yhPt~s 108 (126)
T d1nhpa3 83 ISLAIQAKMTIEDLAYADFFFQPAFD 108 (126)
T ss_dssp HHHHHHTTCBHHHHHTCCCCCCTTTC
T ss_pred HHHHHHcCCCHHHHhcCcccCCCCCc
Confidence 999999999999998765 467776
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.04 E-value=3.3e-09 Score=97.78 Aligned_cols=39 Identities=18% Similarity=0.276 Sum_probs=35.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
++||+|||||++|++||++|++. |.+|+|||+.+..++.
T Consensus 16 ~~DVlVIG~G~aGl~aA~~la~~--G~~V~lvEK~~~~gG~ 54 (308)
T d1y0pa2 16 TVDVVVVGSGGAGFSAAISATDS--GAKVILIEKEPVIGGN 54 (308)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCTT
T ss_pred cCCEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCCCCc
Confidence 47999999999999999999998 8999999999876643
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=99.04 E-value=3.2e-10 Score=106.05 Aligned_cols=107 Identities=14% Similarity=0.110 Sum_probs=64.0
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEe--c--CCcEEecCEEEEeeccCcCcc-cccCCCCc------e-e-cCCCc
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKL--T--NGHTHACDIVVSAIGVVPNSN-IQVHGTPF------E-L-APDCG 293 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~--~--~g~~~~~D~vi~a~G~~p~~~-~~~~~~~l------~-~-~~~g~ 293 (454)
++.|+++++++.|++|+.+++ .+.+.. . ++++++||.||+|++...... .+....+- . + .....
T Consensus 246 ~~~g~~i~~~~~V~~I~~~~~---~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~~~ 322 (370)
T d2iida1 246 RDIQDKVHFNAQVIKIQQNDQ---KVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPYQF 322 (370)
T ss_dssp HHTGGGEESSCEEEEEEECSS---CEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTTHH
T ss_pred HhcCCccccCceEEEEEEeCC---eEEEEEEecCCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhcCCcccc
Confidence 457999999999999998764 344443 2 347899999999986432111 01101000 0 0 00011
Q ss_pred eEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhc
Q psy1545 294 IGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMV 345 (454)
Q Consensus 294 i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 345 (454)
....+.+.+...+||++||++..+ ......|+..|..||.+|-
T Consensus 323 ~~~~~~~~~~~g~v~~aGd~~~~~---------~~~~~~a~~sG~~aA~~i~ 365 (370)
T d2iida1 323 QHFSDPLTASQGRIYFAGEYTAQA---------HGWIDSTIKSGLRAARDVN 365 (370)
T ss_dssp HHHHHHHHCCBTTEEECSGGGSSS---------SSCHHHHHHHHHHHHHHHH
T ss_pred cccchhhhcccCCEEEecccccCC---------CcccHHHHHHHHHHHHHHH
Confidence 112233334556799999987643 1234568999999999874
|
| >d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.02 E-value=1.5e-10 Score=91.53 Aligned_cols=89 Identities=12% Similarity=0.195 Sum_probs=65.9
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCCCce--EEEe-----------ecCCccEEEEEE--ECCeEEEEEEEcCC-
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE--ILLR-----------VTRGEEYIKLVM--KDGRMQGAVLIGET- 419 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~~-----------~~~~~~~~k~~~--~~~~i~G~~~~g~~- 419 (454)
.+|..+|+.| +++.||+++.++...+.. +... .....+++|+++ ++|+|+|+|++|++
T Consensus 3 ~VP~aVfT~P------eiA~VGlte~eA~~~g~~~~v~~~~~~~~~~a~~~~~~~~~~~klv~~~~~g~iLGa~ivG~~A 76 (128)
T d1feca3 3 KVACAVFSIP------PMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSS 76 (128)
T ss_dssp SCCEEECCSS------CEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTH
T ss_pred CCCEEecCCC------cceEEECCHHHHhhhhcCcceeecccchHHHHHhccccccceEEEeecCCCCceeEEEEECCCH
Confidence 4778899988 899999999876544332 2110 112345889998 58999999999998
Q ss_pred -chHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 420 -EIEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 420 -~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
+.++.+..+|++++++++|.+..+ |.+++.+
T Consensus 77 ~ElI~~~~~ai~~~~t~~~l~~~i~-~hPT~sE 108 (128)
T d1feca3 77 PEIIQSVAICLKMGAKISDFYNTIG-VHPTSAE 108 (128)
T ss_dssp HHHHHHHHHHHHTTCBHHHHHTSCC-CSSCSGG
T ss_pred HHHHHHHHHHHHcCCcHHHHhcCcC-CCCcHHH
Confidence 468999999999999999977654 4444443
|
| >d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=1.7e-10 Score=89.52 Aligned_cols=89 Identities=11% Similarity=0.160 Sum_probs=66.9
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCC----CceEEE---e-------ecCCccEEEEEE--ECCeEEEEEEEcCC
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLEN----DYEILL---R-------VTRGEEYIKLVM--KDGRMQGAVLIGET 419 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~----~~~~~~---~-------~~~~~~~~k~~~--~~~~i~G~~~~g~~ 419 (454)
.+|+.+|+.| +++.||+++.++..+ .+.... . ....++|+|+++ ++++|+|+|++|+.
T Consensus 3 ~vP~~vft~P------eiA~VGltE~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~i~~~~~~~ilG~~ivG~~ 76 (115)
T d3grsa3 3 NIPTVVFSHP------PIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLG 76 (115)
T ss_dssp TCCEEECCSS------CEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTT
T ss_pred CCCEEecCcC------ccEEEecCcHHHHHHhCCcccceeEeeeeecchhhcccccceeEEEEEecCCceEEEEEEeccC
Confidence 4678889888 999999998776422 222211 1 123568999999 48999999999999
Q ss_pred c--hHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 420 E--IEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 420 ~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
+ .++.+..+|+++++++++.+. .+|+.++++
T Consensus 77 A~ElI~~~~~ai~~~~t~~~l~~~-i~~hPT~sE 109 (115)
T d3grsa3 77 CDEMLQGFAVAVKMGATKADFDNT-VAIHPTSSE 109 (115)
T ss_dssp HHHHHHHHHHHHHTTCBHHHHHTS-CCCSSCSGG
T ss_pred HHHHHHHHHHHHHcCCCHHHHhhC-ccCCCCHHH
Confidence 4 679999999999999999654 555555555
|
| >d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.01 E-value=1.6e-10 Score=93.32 Aligned_cols=86 Identities=24% Similarity=0.344 Sum_probs=66.9
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEEe----------------------------ecCCccEEEEEE--
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLR----------------------------VTRGEEYIKLVM-- 405 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~----------------------------~~~~~~~~k~~~-- 405 (454)
.+|.++|++| +++.||+++.+++..+.+..+. .....||+|+++
T Consensus 3 ~iP~vvfT~P------eiA~VGlTe~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~vKlv~d~ 76 (140)
T d1mo9a3 3 NYPDFLHTHY------EVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDA 76 (140)
T ss_dssp SCCEEEESSS------EEEEEECCHHHHHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEET
T ss_pred CCCcEeccCC------ccEEEECCHHHHHHcCCCeEEEEEeecccccceeeeeeccchhhhhhhhhcCCCCceEEEEEec
Confidence 5788999988 9999999998775444332211 113468999999
Q ss_pred ECCeEEEEEEEcCC--chHHHHHHHHhcCCCcchhhhh--c-cCCCC
Q psy1545 406 KDGRMQGAVLIGET--EIEEMCENLILNQLDLTDIADD--L-LNPNI 447 (454)
Q Consensus 406 ~~~~i~G~~~~g~~--~~~~~~~~~i~~~~~~~~~~~~--~-~~~~~ 447 (454)
++++|+|+|++|+. +.++.+..+|.+++|++|+.+. . .||++
T Consensus 77 ~t~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~dl~~~~~i~~hPT~ 123 (140)
T d1mo9a3 77 KTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTH 123 (140)
T ss_dssp TTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCC
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHHhcCCCCCCCCh
Confidence 58999999999998 4689999999999999999764 2 36665
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=7.3e-10 Score=92.10 Aligned_cols=150 Identities=17% Similarity=0.131 Sum_probs=75.2
Q ss_pred CCCCCCC----CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeC-CCccccccCCcchh
Q psy1545 107 PRKIWYS----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKD-KHISATFLDPGAAE 179 (454)
Q Consensus 107 p~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~-~~~~~~~~d~~~~~ 179 (454)
|+.|++| ++++ +..|+ +......+++++|||||++|+|+|..+. |++++...+. ..... .......
T Consensus 2 Pr~p~IpG~d~~~V~---~a~d~--L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~--~~~~~~~ 74 (162)
T d1ps9a2 2 PRTPPIDGIDHPKVL---SYLDV--LRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWG--IDSSLQQ 74 (162)
T ss_dssp ECCCCCBTTTSTTEE---EHHHH--HTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTT--BCTTCCS
T ss_pred CCCCCCCCCCCCCeE---EHHHH--hhCccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhcc--CCcchhh
Confidence 6778887 4554 33333 2233345899999999999999999886 6543322110 00000 0000000
Q ss_pred hhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccc--ccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec
Q psy1545 180 FFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHT--QVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT 257 (454)
Q Consensus 180 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~ 257 (454)
.. . . .......................++..+.. .......++..||++++++.+.++..++ +.+..+
T Consensus 75 ~~-~-~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~g-----v~~~~~ 144 (162)
T d1ps9a2 75 AG-G-L---SPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDG-----LHVVIN 144 (162)
T ss_dssp GG-G-B---CTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTE-----EEEEET
T ss_pred hc-c-c---ccccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcCCC-----CEEecC
Confidence 00 0 0 000000000011111111222222222211 1123344567899999999999998654 334333
Q ss_pred CC-cEEecCEEEEeecc
Q psy1545 258 NG-HTHACDIVVSAIGV 273 (454)
Q Consensus 258 ~g-~~~~~D~vi~a~G~ 273 (454)
+. .+++||.||+|+|.
T Consensus 145 g~e~~i~aD~Vv~A~Gq 161 (162)
T d1ps9a2 145 GETQVLAVDNVVICAGQ 161 (162)
T ss_dssp TEEEEECCSEEEECCCE
T ss_pred CeEEEEECCEEEECCCC
Confidence 32 45899999999994
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.99 E-value=1.7e-09 Score=84.19 Aligned_cols=90 Identities=14% Similarity=0.200 Sum_probs=68.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|+++ |.+|+|+++.+.+- +.+ +.+..+...+.+.+ +++++.+ +|+.++
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~--g~~Vtlve~~~~il-----~~~-----d~~~~~~l~~~l~~~gV~i~~~~~V~~i~ 89 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKL--GAQVSVVEARERIL-----PTY-----DSELTAPVAESLKKLGIALHLGHSVEGYE 89 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSSSSS-----TTS-----CHHHHHHHHHHHHHHTCEEETTCEEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHhhc--ccceEEEeeecccc-----ccc-----cchhHHHHHHHHHhhcceEEcCcEEEEEc
Confidence 4799999999999999999999 99999999987652 111 12344455566666 9999866 899998
Q ss_pred CcccEEEeccC--cEEEecEEEEecC
Q psy1545 81 PRVNCVITEKQ--NRIKYKTLCICTG 104 (454)
Q Consensus 81 ~~~~~v~~~~g--~~i~~d~lviAtG 104 (454)
.....+...++ +++.+|.+++|+|
T Consensus 90 ~~~~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 90 NGCLLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp TTEEEEECSSSCCCEECCSCEEECCC
T ss_pred CCeEEEEEcCCCeEEEEcCEEEEecC
Confidence 65544443333 4799999999998
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=7.6e-10 Score=104.13 Aligned_cols=110 Identities=18% Similarity=0.208 Sum_probs=68.7
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCce---------ecCCCc-eEe
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFE---------LAPDCG-IGV 296 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~---------~~~~g~-i~v 296 (454)
++.|+++++++.|++|..+++ .+.|++.||+++++|.||+|++...-.. +.-...+. ....+. -..
T Consensus 218 ~~~g~~i~~~~~v~~I~~~~~---~v~v~~~~g~~~~ad~vI~a~p~~~~~~-~~~~p~l~~~~~~~~~~~~~~~~~~~~ 293 (383)
T d2v5za1 218 DLLGDRVKLERPVIYIDQTRE---NVLVETLNHEMYEAKYVISAIPPTLGMK-IHFNPPLPMMRNQMITRVFPPGILTQY 293 (383)
T ss_dssp HHHGGGEEESCCEEEEECSSS---SEEEEETTSCEEEESEEEECSCGGGGGG-SEEESCCCHHHHHHTTSCCCTTHHHHH
T ss_pred HHcCCeEEecCcceEEEecCC---eEEEEECCCCEEECCEEEECCCHHHHhh-CccCCCCCHHHHHHHHHhccCCccchh
Confidence 447999999999999988764 5779999999999999999986432211 10000000 001111 111
Q ss_pred ccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 297 NELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 297 d~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
...++....+|+.+|+...... ......|+.+|+.+|..++..+
T Consensus 294 ~~~~~~~~~~~~~~G~~~~~~~--------~g~~~ga~~~g~~~a~~i~~~~ 337 (383)
T d2v5za1 294 GRVLRQPVDRIYFAGTETATHW--------SGYMEGAVEAGERAAREILHAM 337 (383)
T ss_dssp GGGTTCCBTTEEECSGGGCSSS--------TTSHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhcCCcCceEeccccccccC--------CcchHHHHHHHHHHHHHHHHHh
Confidence 2233455677999997654321 1234568889998888876543
|
| >d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=3e-10 Score=88.08 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=66.7
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCC--C--ceEE---Ee-------ecCCccEEEEEE--ECCeEEEEEEEcCC
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLEN--D--YEIL---LR-------VTRGEEYIKLVM--KDGRMQGAVLIGET 419 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~--~--~~~~---~~-------~~~~~~~~k~~~--~~~~i~G~~~~g~~ 419 (454)
.+|..+|+.| +++.||+++.+++.. + +... .. .....+|+|+++ ++++|+|+|++|++
T Consensus 3 ~vP~~vft~P------eiA~VGlte~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~v~~~~~~~IlGa~ivG~~ 76 (115)
T d1gesa3 3 NIPTVVFSHP------PIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFG 76 (115)
T ss_dssp SCCEEECCSS------CEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTT
T ss_pred CCCeEecCCC------ccEEEeCCHHHHHHHcCCcccceeeeecccccccceeccccceEEEEEecCCcEEEEEEEECCC
Confidence 4678889888 899999998776532 2 2211 11 123468999999 48999999999999
Q ss_pred c--hHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 420 E--IEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 420 ~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
+ .++.+..+|.++++++++.+. .++..++++
T Consensus 77 A~ElI~~~~~ai~~~~t~~~l~~~-i~~hPT~sE 109 (115)
T d1gesa3 77 MDEMLQGFAVALKMGATKKDFDNT-VAIHPTAAE 109 (115)
T ss_dssp HHHHHHHHHHHHHTTCBHHHHHTS-CCCSSCSGG
T ss_pred HHHHHHHHHHHHHcCCcHHHHhcC-cccCCcHHH
Confidence 4 678999999999999999764 555555554
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=98.97 E-value=1.6e-10 Score=104.92 Aligned_cols=56 Identities=16% Similarity=0.095 Sum_probs=44.5
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCcee
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFEL 288 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~ 288 (454)
++.|++++.++.|++++.+++ .+.|++++| ++.||.||+|+|..... +++..|+..
T Consensus 162 ~~~Gv~i~~~~~V~~i~~~~~---~~~V~t~~g-~i~a~~vV~AaG~~s~~--l~~~~G~~~ 217 (276)
T d1ryia1 162 KMLGAEIFEHTPVLHVERDGE---ALFIKTPSG-DVWANHVVVASGVWSGM--FFKQLGLNN 217 (276)
T ss_dssp HHTTCEEETTCCCCEEECSSS---SEEEEETTE-EEEEEEEEECCGGGTHH--HHHHTTCCC
T ss_pred HHcCCEEecceEEEeEEeecc---eEEEecCCe-EEEcCEEEECCCccHHH--HHhhcCCCc
Confidence 448999999999999997653 677888877 69999999999986543 666666653
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.97 E-value=1.6e-09 Score=101.24 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=36.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK 44 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~ 44 (454)
.+|+|||||++|++||..|++.+.+.+|+|+|+++.+++.|.
T Consensus 5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~ 46 (335)
T d2gv8a1 5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWN 46 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCS
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCccc
Confidence 579999999999999999988744579999999988776554
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=98.97 E-value=1e-10 Score=106.61 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=45.5
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCcee
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFEL 288 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~ 288 (454)
++.|+++++++.|.+++..++ .+.|.+++| ++.||.||+|+|...+. +++..|+..
T Consensus 161 ~~~Gv~i~~~~~V~~i~~~~~---~v~V~t~~g-~i~a~~VViAaG~~s~~--l~~~lg~~~ 216 (281)
T d2gf3a1 161 EARGAKVLTHTRVEDFDISPD---SVKIETANG-SYTADKLIVSMGAWNSK--LLSKLNLDI 216 (281)
T ss_dssp HHTTCEEECSCCEEEEEECSS---CEEEEETTE-EEEEEEEEECCGGGHHH--HGGGGTEEC
T ss_pred ccccccccCCcEEEEEEEECC---EEEEEECCc-EEEcCEEEECCCCcchh--hHHhcCCcc
Confidence 458999999999999998764 577888887 69999999999986554 677767665
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.96 E-value=1.5e-09 Score=97.77 Aligned_cols=107 Identities=21% Similarity=0.248 Sum_probs=71.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc-ccccccccc--------------------cc-----ccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA-VTKTVPVTK--------------------LL-----SDI 55 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~-~~~~~~~~~--------------------~~-----~~~ 55 (454)
+||+||||||++|+.+|..++++ |.++++||+.+.+++ |.++.+.+. .. ...
T Consensus 42 ~yDvvVIGgG~aG~~aA~~~a~~--G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 119 (261)
T d1mo9a1 42 EYDAIFIGGGAAGRFGSAYLRAM--GGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVV 119 (261)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccc
Confidence 48999999999999999999999 899999999876543 333211100 00 000
Q ss_pred chhh------h---------HHHHHhc--CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC
Q psy1545 56 TVEE------T---------DANKFEG--LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS 113 (454)
Q Consensus 56 ~~~~------~---------~~~~~~~--~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~ 113 (454)
++.. . ....+.. ...++.+.+..++++. +.. +++++++|.+++|||.+|+.|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~--v~~-~g~~i~ad~viiAtG~~P~~~~i~ 191 (261)
T d1mo9a1 120 GIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHT--VEA-AGKVFKAKNLILAVGAGPGTLDVP 191 (261)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTE--EEE-TTEEEEBSCEEECCCEECCCCCST
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEeeecc--ccc-ccceEeeeeeeeccCCCCCcCccc
Confidence 0000 0 0111222 3444577888887654 444 678999999999999999998876
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.94 E-value=1.6e-09 Score=90.32 Aligned_cols=99 Identities=16% Similarity=0.231 Sum_probs=69.1
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccc----cccccchhhhHHHHHhc-CcEEEcc-eEE
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTK----LLSDITVEETDANKFEG-LCTVIVD-TVA 77 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~i~~~~~-~v~ 77 (454)
+|+|||||++|+.+|..|++ +.+|+|+++++.+.+. .+.++. ..............+.+ +++++.+ .++
T Consensus 2 rVvIIGgG~~G~e~A~~l~~---~~~Vtvv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 76 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ---TYEVTVIDKEPVPYYS--KPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAK 76 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT---TSEEEEECSSSSCCCC--STTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEE
T ss_pred eEEEECCcHHHHHHHHHHHc---CCCEEEEecccccccc--ccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccc
Confidence 69999999999999999976 5699999998765421 111111 11111122223344445 8998755 889
Q ss_pred EEeCcccEEEeccCcEEEecEEEEecCCCCC
Q psy1545 78 AIDPRVNCVITEKQNRIKYKTLCICTGASPR 108 (454)
Q Consensus 78 ~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~ 108 (454)
.++...+.+.. ++.++.||.+++|+|..|.
T Consensus 77 ~i~~~~~~~~~-~~~~i~~D~li~a~G~~~~ 106 (167)
T d1xhca1 77 LIDRGRKVVIT-EKGEVPYDTLVLATGAPNV 106 (167)
T ss_dssp EEETTTTEEEE-SSCEEECSEEEECCCEECC
T ss_pred ccccccccccc-cccccccceeEEEEEecCC
Confidence 99887766555 6678999999999998664
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=2.7e-10 Score=105.20 Aligned_cols=91 Identities=16% Similarity=0.141 Sum_probs=62.2
Q ss_pred CCceEEEeCceEEEEEcCCCC-----ccceEEEe---cCC--cEEecCEEEEeeccCcCcc--------------cccCC
Q psy1545 228 DTKITIEYSCEVERIVDSEDD-----TCNAYVKL---TNG--HTHACDIVVSAIGVVPNSN--------------IQVHG 283 (454)
Q Consensus 228 ~~gv~i~~~~~v~~i~~~~~~-----~~~~~v~~---~~g--~~~~~D~vi~a~G~~p~~~--------------~~~~~ 283 (454)
..+++++.++.+.++..+++. .+...+.. .++ ..+.++.||+|+|--.... .+...
T Consensus 150 ~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG~~mA~~ 229 (305)
T d1chua2 150 HPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWR 229 (305)
T ss_dssp CTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHHHHHHHH
T ss_pred ccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceecccEeeccc
Confidence 378999999998887654310 12333433 234 4578999999997533211 01123
Q ss_pred CCceecCCCceEeccccccccCceeecCcccccCC
Q psy1545 284 TPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSW 318 (454)
Q Consensus 284 ~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~ 318 (454)
.|.++...++|.+|++.+|+.|++||+|+++....
T Consensus 230 aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~~~~~ 264 (305)
T d1chua2 230 AGCRVANCGGVMVDDHGRTDVEGLYAIGEVSYTGL 264 (305)
T ss_dssp TTCCEECSCEEECCTTCBCSSBTEEECGGGEECSS
T ss_pred cceeeEecceeEECCcccCCCCCceecccEEEeee
Confidence 46777778999999999999999999999765443
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=4.7e-09 Score=82.76 Aligned_cols=93 Identities=19% Similarity=0.250 Sum_probs=70.7
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCC
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPS 211 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (454)
++|+++|||+|.+|+|.|..|+ ..+||+++|++.+.. ++...+.+.+..
T Consensus 26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~---~~~~~~~~~~~~-------------------------- 76 (126)
T d1trba2 26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA---EKILIKRLMDKV-------------------------- 76 (126)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC---CHHHHHHHHHHH--------------------------
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccc---hhHHHHHHHHhh--------------------------
Confidence 4899999999999999999998 889999999887642 333333333332
Q ss_pred CCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC------cEEecCEEEEeec
Q psy1545 212 LGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG------HTHACDIVVSAIG 272 (454)
Q Consensus 212 l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g------~~~~~D~vi~a~G 272 (454)
.+.+|.+++++.+.++..++. ....+++.|. +++++|-|++++|
T Consensus 77 ---------------~~~~i~~~~~~~v~~i~G~~~--~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 77 ---------------ENGNIILHTNRTLEEVTGDQM--GVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp ---------------HTSSEEEECSCEEEEEEECSS--SEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred ---------------cccceeEecceEEEEEECCCC--ceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence 237899999999999998752 2445666542 4699999999887
|
| >d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.92 E-value=3.1e-10 Score=88.73 Aligned_cols=89 Identities=18% Similarity=0.247 Sum_probs=66.7
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCC----CceEEE-e-------------ecCCccEEEEEE--ECCeEEEEEE
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLEN----DYEILL-R-------------VTRGEEYIKLVM--KDGRMQGAVL 415 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~----~~~~~~-~-------------~~~~~~~~k~~~--~~~~i~G~~~ 415 (454)
.+|+.+||.| +++.||+++.++... .+.... . .....+|+|+++ ++++|+|+|+
T Consensus 3 ~vP~~vfT~P------eiA~VGlte~~A~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~IlGa~i 76 (119)
T d1onfa3 3 LIPTVIFSHP------PIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHI 76 (119)
T ss_dssp SCCEEECCSS------CEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEE
T ss_pred cCCeEeccCC------ccEEEECCHHHHHHhcccccccccccccCccccchhhhhhccCCCceEEEEEecCCCcEEEEEE
Confidence 4688899988 999999998776422 122111 0 012458999999 6899999999
Q ss_pred EcCCc--hHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 416 IGETE--IEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 416 ~g~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
+|+.+ .++.+..+|++|++++++.+..+ |+.++++
T Consensus 77 vG~~A~ElI~~~~~ai~~~~t~~~l~~~i~-~hPT~sE 113 (119)
T d1onfa3 77 IGLNADEIVQGFAVALKMNATKKDFDETIP-IHPTAAE 113 (119)
T ss_dssp ESTTHHHHHHHHHHHHHTTCBHHHHHTSCC-CTTCSTT
T ss_pred eCCCHHHHHHHHHHHHHcCCcHHHHhhCcc-cCCCHHH
Confidence 99994 68999999999999999977554 5555554
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.89 E-value=2.6e-09 Score=91.38 Aligned_cols=102 Identities=16% Similarity=0.068 Sum_probs=68.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc----ccccc-------cccccccccchhhhHHHHHhc-Cc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA----VTKTV-------PVTKLLSDITVEETDANKFEG-LC 69 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~i 69 (454)
++||+||||||+|++||..|++. +.+++++|+...... ..... .++......++.....++..+ ++
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~ 82 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARA--ELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGT 82 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTC
T ss_pred cceEEEECCCHHHHHHHHHHHHc--CCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhcc
Confidence 58999999999999999999998 999999998764321 11111 111111122233333444445 88
Q ss_pred EEEcceEEEEeCccc--EEEeccCcEEEecEEEEecCCC
Q psy1545 70 TVIVDTVAAIDPRVN--CVITEKQNRIKYKTLCICTGAS 106 (454)
Q Consensus 70 ~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lviAtG~~ 106 (454)
++..+.|..++...+ .+.+ +...+.+|.+++++|..
T Consensus 83 ~i~~~~V~~~~~~~~~~~v~~-~~~~~~~~~~~~a~g~~ 120 (192)
T d1vdca1 83 TIFTETVTKVDFSSKPFKLFT-DSKAILADAVILAIGAV 120 (192)
T ss_dssp EEECCCCCEEECSSSSEEEEC-SSEEEEEEEEEECCCEE
T ss_pred eeeeeeEEecccccCcEEecc-cceeeeeeeEEEEeeee
Confidence 888888888876655 3333 44578999999999963
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=98.89 E-value=1.7e-09 Score=96.47 Aligned_cols=117 Identities=19% Similarity=0.132 Sum_probs=74.5
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc--------cccCCCCceecC--CC
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN--------IQVHGTPFELAP--DC 292 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~--------~~~~~~~l~~~~--~g 292 (454)
.+.+++.||+++++++|+++..+++ ....+.+++|+++.+|.||+|+|-..... .+++..+..+.. .+
T Consensus 117 ~~~~~~~gv~i~~~~~v~~i~~~~~--~~~~v~~~~g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~~~~~~~~~ 194 (251)
T d2i0za1 117 LTRLKDLGVKIRTNTPVETIEYENG--QTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTITELFGG 194 (251)
T ss_dssp HHHHHHTTCEEECSCCEEEEEEETT--EEEEEEETTCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHcCCcccCCcEEEEEEEECC--EEEEEEeCCCCeEecCeEEEccCCccccccCCCcccchhcccceeeeeeeeec
Confidence 3445678999999999999987652 34568889999999999999999765332 022333333211 01
Q ss_pred ceEec----ccc-ccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 293 GIGVN----ELM-QTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 293 ~i~vd----~~~-~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
.+.++ ..+ .+..|++|++|++........+ .....|...|+.|+..+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG-----~~~~~a~~~G~~a~~~~~~ 248 (251)
T d2i0za1 195 GVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGG-----YNITSALVTGRIAGTTAGE 248 (251)
T ss_dssp EECGGGEETTTTEESSSBTEEECGGGBSCBCCTTT-----HHHHHHHHHHHHHHHHHHH
T ss_pred ccCccccCchhHHHhcCCCcEeeeeEEEccCCcch-----HHHHHHHHHHHHHHHHHHH
Confidence 11111 122 2578999999998754211111 1235678899999887753
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=8.1e-09 Score=82.87 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=69.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhc--CCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFL--HPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAA 78 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~--~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~ 78 (454)
.+++|||||+.|+-+|..|++. ..+.+|+++++++.+- +..+ +.+......+.+.+ +++++.+ .+..
T Consensus 38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l--------~~~~-~~~~~~~~~~~l~~~GV~~~~~~~V~~ 108 (137)
T d1m6ia2 38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM--------GKIL-PEYLSNWTMEKVRREGVKVMPNAIVQS 108 (137)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT--------TTTS-CHHHHHHHHHHHHTTTCEEECSCCEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC--------cccC-CHHHHHHHHHHHHhCCcEEEeCCEEEE
Confidence 3699999999999999998642 1288999999987642 1111 12333444566667 9999865 8888
Q ss_pred EeCccc--EEEeccCcEEEecEEEEecC
Q psy1545 79 IDPRVN--CVITEKQNRIKYKTLCICTG 104 (454)
Q Consensus 79 i~~~~~--~v~~~~g~~i~~d~lviAtG 104 (454)
++.++. .+++++|+++.+|.+|+|+|
T Consensus 109 i~~~~~~~~v~l~~G~~i~aD~Vi~A~G 136 (137)
T d1m6ia2 109 VGVSSGKLLIKLKDGRKVETDHIVAAVG 136 (137)
T ss_dssp EEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred EEecCCEEEEEECCCCEEECCEEEEeec
Confidence 875543 67888999999999999998
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.87 E-value=8.1e-09 Score=80.61 Aligned_cols=90 Identities=14% Similarity=0.183 Sum_probs=68.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+-+|..++++ |.+|+++++.+.+- +. .+.+......+.+.+ +++++.+ +++.++
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~--G~~Vtiv~~~~~ll-----~~-----~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~ 90 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARL--GAEVTVLEAMDKFL-----PA-----VDEQVAKEAQKILTKQGLKILLGARVTGTE 90 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSSSS-----TT-----SCHHHHHHHHHHHHHTTEEEEETCEEEEEE
T ss_pred CeEEEECCChHHHHHHHHHHHc--CCceEEEEeecccC-----Cc-----ccchhHHHHHHHHHhcCceeecCcEEEEEE
Confidence 4799999999999999999998 99999999987642 11 123344555566666 9999865 888887
Q ss_pred Cccc--EEEeccC---cEEEecEEEEecC
Q psy1545 81 PRVN--CVITEKQ---NRIKYKTLCICTG 104 (454)
Q Consensus 81 ~~~~--~v~~~~g---~~i~~d~lviAtG 104 (454)
.... .+++.++ +++.+|.+++|+|
T Consensus 91 ~~~~~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 91 VKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp ECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred EeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence 6554 4444333 5799999999998
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=1.3e-08 Score=80.13 Aligned_cols=91 Identities=16% Similarity=0.271 Sum_probs=70.1
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCC
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPS 211 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (454)
++|+++|||+|.+|+|.|..|+ ..+|+|++|++.+.. .+.+.+++.+
T Consensus 29 ~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~-------~~~~~~~~~~------------------------ 77 (126)
T d1fl2a2 29 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA-------DQVLQDKLRS------------------------ 77 (126)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS-------CHHHHHHHHT------------------------
T ss_pred CCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc-------cccccccccc------------------------
Confidence 5999999999999999999997 789999999886543 2333334322
Q ss_pred CCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC---C--cEEecCEEEEeecc
Q psy1545 212 LGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN---G--HTHACDIVVSAIGV 273 (454)
Q Consensus 212 l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~---g--~~~~~D~vi~a~G~ 273 (454)
..+|++++++.+.++.++++ ....+++.| | +++++|.+++++|.
T Consensus 78 ----------------~~~I~v~~~~~v~~i~G~~~--~v~~v~l~~~~tge~~~l~vdgvFv~IGl 126 (126)
T d1fl2a2 78 ----------------LKNVDIILNAQTTEVKGDGS--KVVGLEYRDRVSGDIHNIELAGIFVQIGL 126 (126)
T ss_dssp ----------------CTTEEEESSEEEEEEEESSS--SEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred ----------------ccceeEEcCcceEEEEcccc--ceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence 25799999999999998752 244566643 4 57999999999884
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=98.85 E-value=1.2e-08 Score=79.46 Aligned_cols=92 Identities=14% Similarity=0.215 Sum_probs=68.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcC-CCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLH-PGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAI 79 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i 79 (454)
.+++|||||+.|+.+|..+.++. .+.+|+++++.+.+- +.+ +.+......+.+.+ +++++.+ .+..+
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il-----~~~-----d~~~~~~~~~~l~~~GI~v~~~~~v~~i 88 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-----RGF-----DSELRKQLTEQLRANGINVRTHENPAKV 88 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS-----TTS-----CHHHHHHHHHHHHHTTEEEEETCCEEEE
T ss_pred CeEEEECCChHHHHHHHHhHhhcccccccceeccccccc-----ccc-----cchhhHHHHHHHhhCcEEEEcCCEEEEE
Confidence 47999999999999998766542 278999999987541 111 12344445556666 9999855 88888
Q ss_pred eCcc---cEEEeccCcEEEecEEEEecC
Q psy1545 80 DPRV---NCVITEKQNRIKYKTLCICTG 104 (454)
Q Consensus 80 ~~~~---~~v~~~~g~~i~~d~lviAtG 104 (454)
..+. ..+.+++|+++.+|.+++|||
T Consensus 89 ~~~~~g~~~v~~~~g~~i~~D~Vi~a~G 116 (117)
T d1feca2 89 TKNADGTRHVVFESGAEADYDVVMLAIG 116 (117)
T ss_dssp EECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred EECCCCEEEEEECCCCEEEcCEEEEecC
Confidence 6432 257888999999999999998
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.85 E-value=1.1e-08 Score=80.25 Aligned_cols=90 Identities=16% Similarity=0.209 Sum_probs=67.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|+++ |.+|+++|+.+.+- +..+ +.+......+.+.+ +++++.+ ++..++
T Consensus 31 k~vvViGgG~iG~E~A~~l~~~--g~~Vtlie~~~~~l--------~~~~-d~~~~~~~~~~l~~~gv~~~~~~~v~~i~ 99 (123)
T d1nhpa2 31 NNVVVIGSGYIGIEAAEAFAKA--GKKVTVIDILDRPL--------GVYL-DKEFTDVLTEEMEANNITIATGETVERYE 99 (123)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSSTT--------TTTC-CHHHHHHHHHHHHTTTEEEEESCCEEEEE
T ss_pred CEEEEECChHHHHHHHHHhhcc--ceEEEEEEecCccc--------cccc-chhhHHHHHHHhhcCCeEEEeCceEEEEE
Confidence 3799999999999999999998 99999999987541 1111 12334444566666 9999865 889998
Q ss_pred Cccc-EEEeccCcEEEecEEEEec
Q psy1545 81 PRVN-CVITEKQNRIKYKTLCICT 103 (454)
Q Consensus 81 ~~~~-~v~~~~g~~i~~d~lviAt 103 (454)
.+.+ ...+.+|+++++|.+|+|.
T Consensus 100 ~~~~~~~v~~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 100 GDGRVQKVVTDKNAYDADLVVVAV 123 (123)
T ss_dssp CSSBCCEEEESSCEEECSEEEECS
T ss_pred cCCCEEEEEeCCCEEECCEEEEEC
Confidence 6643 3335588899999999983
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.82 E-value=1.1e-08 Score=80.36 Aligned_cols=87 Identities=18% Similarity=0.230 Sum_probs=67.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|+++ |.+|+|+++.+.+. .+ +.+......+.+.+ +++++.+ ++..++
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~--g~~Vtlv~~~~~l~------~~-----d~~~~~~~~~~l~~~GV~~~~~~~v~~~~ 99 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEA--GYHVKLIHRGAMFL------GL-----DEELSNMIKDMLEETGVKFFLNSELLEAN 99 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHT--TCEEEEECSSSCCT------TC-----CHHHHHHHHHHHHHTTEEEECSCCEEEEC
T ss_pred CcEEEECCcHHHHHHHHHhhcc--cceEEEEecccccc------CC-----CHHHHHHHHHHHHHCCcEEEeCCEEEEEe
Confidence 4799999999999999999998 99999999987652 11 12333444556666 9999865 888887
Q ss_pred CcccEEEeccCcEEEecEEEEecCC
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGA 105 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~ 105 (454)
.+. +. .+++.+.+|.+|+|+|.
T Consensus 100 ~~~--v~-~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 100 EEG--VL-TNSGFIEGKVKICAIGI 121 (122)
T ss_dssp SSE--EE-ETTEEEECSCEEEECCE
T ss_pred CCE--EE-eCCCEEECCEEEEEEEe
Confidence 654 33 37789999999999993
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.81 E-value=1.4e-09 Score=93.17 Aligned_cols=160 Identities=17% Similarity=0.107 Sum_probs=91.8
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CC-cEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCC
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NV-DIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP 210 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~-~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (454)
.++||+|||||++|+++|..|+ |. +|+++++++.+................+.
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~------------------------ 58 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVV------------------------ 58 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHH------------------------
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccc------------------------
Confidence 3899999999999999999996 87 59999998876542100000000000000
Q ss_pred CCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCccc-c--cCCCCce
Q psy1545 211 SLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNI-Q--VHGTPFE 287 (454)
Q Consensus 211 ~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~-~--~~~~~l~ 287 (454)
. .........+..+.....+.. .. ....+..+..++.+++++|..+.... . .......
T Consensus 59 --------~-~~~~~~~~~~~~~~~~~~v~~---~~-------~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~ 119 (196)
T d1gtea4 59 --------N-FEIELMKDLGVKIICGKSLSE---NE-------ITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIK 119 (196)
T ss_dssp --------H-HHHHHHHTTTCEEEESCCBST---TS-------BCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSC
T ss_pred --------c-chhhhhhccceeEEeeEEecc---ce-------eeeehhhccccceeeEEeccccCCccccccccccccc
Confidence 0 000111234566666544421 11 11222334567889999987554320 0 1111222
Q ss_pred ecCCCceEec-cccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 288 LAPDCGIGVN-ELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 288 ~~~~g~i~vd-~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
....+....+ ..++|+.+.||++||+++.. ..+..|..+|+.+|..+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~v~~~g~vigg~----------~~av~a~~~g~~~a~~v~r 169 (196)
T d1gtea4 120 FNRWDLPEVDPETMQTSEPWVFAGGDIVGMA----------NTTVESVNDGKQASWYIHK 169 (196)
T ss_dssp BCTTSSBCCCTTTCBCSSTTEEECSGGGCSC----------CCHHHHHHHHHHHHHHHHH
T ss_pred cccccceeccccccCCCcccccccccccCCc----------chHHHHHHHHhhhehhHhh
Confidence 3334555555 45889999999999998753 3445677778877776654
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.76 E-value=3.7e-08 Score=76.42 Aligned_cols=89 Identities=13% Similarity=0.144 Sum_probs=67.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. |.+|+|+++.+.+- +. + +.++.....+.+.+ +++++.+ +++.++
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~--g~~Vtlv~~~~~il-----~~----~-d~~~~~~~~~~l~~~gV~i~~~~~v~~i~ 90 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRL--GIDSYIFARGNRIL-----RK----F-DESVINVLENDMKKNNINIVTFADVVEIK 90 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSSSSC-----TT----S-CHHHHHHHHHHHHHTTCEEECSCCEEEEE
T ss_pred CEEEEECCchHHHHHHHHHHhc--cccceeeehhcccc-----cc----c-cHHHHHHHHHHHHhCCCEEEECCEEEEEE
Confidence 4699999999999999999998 99999999987541 11 1 22344455566666 9999855 888886
Q ss_pred Ccc---cEEEeccCcEE-EecEEEEec
Q psy1545 81 PRV---NCVITEKQNRI-KYKTLCICT 103 (454)
Q Consensus 81 ~~~---~~v~~~~g~~i-~~d~lviAt 103 (454)
... ..+++.+|+.+ .||.+++|.
T Consensus 91 ~~~~~~~~v~~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 91 KVSDKNLSIHLSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp ESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred EcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence 332 35778888877 589999983
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=98.74 E-value=7e-09 Score=95.34 Aligned_cols=57 Identities=23% Similarity=0.150 Sum_probs=43.8
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCcee
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFEL 288 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~ 288 (454)
++.|++++.+++|+++..+++ +...|++++| +++||.||+|+|..... +++..|+.+
T Consensus 159 ~~~gv~i~~~~~V~~i~~~~~--~v~~V~T~~g-~i~a~~VV~aaG~~s~~--l~~~~g~~l 215 (305)
T d1pj5a2 159 ESAGVTYRGSTTVTGIEQSGG--RVTGVQTADG-VIPADIVVSCAGFWGAK--IGAMIGMAV 215 (305)
T ss_dssp HHTTCEEECSCCEEEEEEETT--EEEEEEETTE-EEECSEEEECCGGGHHH--HHHTTTCCC
T ss_pred hcccccccCCceEEEEEEeCC--EEEEEeccce-eEECCEEEEecchhHHH--HHHHcCCcc
Confidence 448999999999999998763 3455777776 69999999999987543 566555443
|
| >d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.73 E-value=3e-09 Score=84.60 Aligned_cols=90 Identities=14% Similarity=0.204 Sum_probs=64.1
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCCC----ceEEEe-----------ecCCccEEEEEE---ECCeEEEEEEEc
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLEND----YEILLR-----------VTRGEEYIKLVM---KDGRMQGAVLIG 417 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~----~~~~~~-----------~~~~~~~~k~~~---~~~~i~G~~~~g 417 (454)
.+|..+|+.| +++.||+++.++..++ +..+.. .....++.++++ ++++|||+|++|
T Consensus 3 ~VP~~vfT~P------eiA~VGlte~eA~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ILGa~ivg 76 (133)
T d1h6va3 3 NVPTTVFTPL------EYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVICNLKDNERVVGFHVLG 76 (133)
T ss_dssp SCCEEECSSS------CEEEEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTCEEEEEEEEGGGTTEEEEEEEES
T ss_pred CCCEEecCcc------hheeEeCCHHHHHHhccccccchheeccchhhhhhhhhcccccceEEEEEecCcccEEEEEEeC
Confidence 4778899888 9999999987765321 111100 012344555554 479999999999
Q ss_pred CC--chHHHHHHHHhcCCCcchhhhhccCCCCCCCCC
Q psy1545 418 ET--EIEEMCENLILNQLDLTDIADDLLNPNIDIDDY 452 (454)
Q Consensus 418 ~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 452 (454)
++ +.++.+..+|++++|++++.+ ..+|..++.+.
T Consensus 77 ~~A~ElI~~~~~ai~~~~t~~~l~~-~i~~hPT~sE~ 112 (133)
T d1h6va3 77 PNAGEVTQGFAAALKCGLTKQQLDS-TIGIHPVCAEI 112 (133)
T ss_dssp TTHHHHHHHHHHHHHTTCBHHHHHH-SCCCTTCGGGG
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHhh-ccccCCCHHHH
Confidence 99 468999999999999999965 55555665553
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.71 E-value=8.2e-08 Score=75.60 Aligned_cols=91 Identities=20% Similarity=0.250 Sum_probs=68.0
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCC
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPS 211 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (454)
++|+|+|||+|.+|+|.|..|+ ..+|||++|++.+.. .+.+.+++.
T Consensus 33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra-------~~~~~~~l~------------------------- 80 (130)
T d1vdca2 33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA-------SKIMQQRAL------------------------- 80 (130)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------CHHHHHHHH-------------------------
T ss_pred CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc-------chhhhhccc-------------------------
Confidence 4899999999999999999998 789999999987643 233333332
Q ss_pred CCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC---C--cEEecCEEEEee
Q psy1545 212 LGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN---G--HTHACDIVVSAI 271 (454)
Q Consensus 212 l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~---g--~~~~~D~vi~a~ 271 (454)
+..+|++++++.+.++..++.......+++.| + +++++|-|++++
T Consensus 81 ---------------~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI 130 (130)
T d1vdca2 81 ---------------SNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI 130 (130)
T ss_dssp ---------------TCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred ---------------cCCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence 23689999999999999865312233454433 3 679999999874
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.69 E-value=7.9e-08 Score=74.59 Aligned_cols=91 Identities=14% Similarity=0.245 Sum_probs=67.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCC-CCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHP-GESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAI 79 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i 79 (454)
.+++|||||+.|+-+|..+.+++. +.+|+|+++.+.+- +. + +.+......+.+++ +++++.+ +++.+
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL-----~~----~-d~~~~~~l~~~l~~~GV~v~~~~~v~~i 90 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL-----RG----F-DHTLREELTKQLTANGIQILTKENPAKV 90 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS-----TT----S-CHHHHHHHHHHHHHTTCEEEESCCEEEE
T ss_pred CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh-----cc----c-chHHHHHHHHHHHhcCcEEEcCCEEEEE
Confidence 479999999999999988777632 56899999977541 11 1 22344455566666 9999855 88888
Q ss_pred eCc---ccEEEeccCcEEEecEEEEec
Q psy1545 80 DPR---VNCVITEKQNRIKYKTLCICT 103 (454)
Q Consensus 80 ~~~---~~~v~~~~g~~i~~d~lviAt 103 (454)
+.. ...+++++|+++.+|.+++|.
T Consensus 91 e~~~~~~~~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 91 ELNADGSKSVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp EECTTSCEEEEETTSCEEEESEEEECS
T ss_pred EEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence 643 246888899999999999983
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.69 E-value=6e-08 Score=76.08 Aligned_cols=90 Identities=22% Similarity=0.340 Sum_probs=67.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+-+|..++++ |.+|+++++.+.+-. . .+.+......+.+.+ +++++.+ ++..+.
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~--G~~Vtive~~~~il~-----~-----~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~ 94 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTL--GSRLDVVEMMDGLMQ-----G-----ADRDLVKVWQKQNEYRFDNIMVNTKTVAVE 94 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSSSSST-----T-----SCHHHHHHHHHHHGGGEEEEECSCEEEEEE
T ss_pred CeEEEECCCHHHHHHHHHhhcC--CCEEEEEEeeccccc-----c-----chhhHHHHHHHHHHHcCcccccCcEEEEEE
Confidence 4799999999999999999999 999999999875421 1 123444555666766 9999855 888886
Q ss_pred Cccc--EEEec--cC--cEEEecEEEEecC
Q psy1545 81 PRVN--CVITE--KQ--NRIKYKTLCICTG 104 (454)
Q Consensus 81 ~~~~--~v~~~--~g--~~i~~d~lviAtG 104 (454)
.+.. .+.+. ++ +.+.+|.+++|+|
T Consensus 95 ~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G 124 (125)
T d1ojta2 95 PKEDGVYVTFEGANAPKEPQRYDAVLVAAG 124 (125)
T ss_dssp EETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred EcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence 5443 44443 23 3799999999998
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.69 E-value=4.8e-08 Score=76.42 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=65.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+-.|..|+++ +.+|+++++.+... +.+ +.+......+.+.+ +++++.+ ++..+.
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~--g~~vt~i~~~~~~l-----~~~-----d~~~~~~~~~~l~~~gI~v~~~~~v~~i~ 90 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNAT--GRRTVMLVRTEPLK-----LIK-----DNETRAYVLDRMKEQGMEIISGSNVTRIE 90 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCTTT-----TCC-----SHHHHHHHHHHHHHTTCEEESSCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhc--chhheEeeccchhh-----ccc-----ccchhhhhhhhhhccccEEEcCCEEEEEE
Confidence 4799999999999999999998 99999999987542 111 12233444555666 9999865 888886
Q ss_pred Cccc----EE---EeccCcEEEecEEEEecC
Q psy1545 81 PRVN----CV---ITEKQNRIKYKTLCICTG 104 (454)
Q Consensus 81 ~~~~----~v---~~~~g~~i~~d~lviAtG 104 (454)
.+.. .+ ...+++++.+|.+++|+|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 91 EDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp ECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred ecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 5432 11 223456899999999998
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.68 E-value=7.4e-08 Score=74.83 Aligned_cols=88 Identities=15% Similarity=0.266 Sum_probs=64.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..++++ |.+|+|+++.+.+- +. + +.+......+.+.+ +++++.+ +++.++
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~--G~~Vtlve~~~~il-----~~----~-d~~~~~~l~~~l~~~GI~i~~~~~v~~i~ 90 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANF--GTKVTILEGAGEIL-----SG----F-EKQMAAIIKKRLKKKGVEVVTNALAKGAE 90 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSSSS-----TT----S-CHHHHHHHHHHHHHTTCEEEESEEEEEEE
T ss_pred CeEEEECCCccceeeeeeeccc--ccEEEEEEecceec-----cc----c-cchhHHHHHHHHHhcCCEEEcCCEEEEEE
Confidence 5799999999999999999998 99999999988652 11 1 22344455566666 9999855 888887
Q ss_pred Cccc--EEEec-cC--cEEEecEEEEe
Q psy1545 81 PRVN--CVITE-KQ--NRIKYKTLCIC 102 (454)
Q Consensus 81 ~~~~--~v~~~-~g--~~i~~d~lviA 102 (454)
.... .+.+. +| +++.+|.+++.
T Consensus 91 ~~~~~~~v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 91 EREDGVTVTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp EETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred EcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence 5443 34433 33 46999999874
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.66 E-value=2.8e-08 Score=83.89 Aligned_cols=107 Identities=21% Similarity=0.281 Sum_probs=69.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-----cccchhhhHHHHHhc-CcEEEcc-e
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-----SDITVEETDANKFEG-LCTVIVD-T 75 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~i~~~~~-~ 75 (454)
.+|||||||++|+.+|..|+++++...|+++++.+... +....+...+ ............+.. ...+..+ .
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIP--HHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ 81 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCC--BCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccc--hhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence 58999999999999999999984444455555554332 2221211111 111111111222233 5555544 7
Q ss_pred EEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 76 VAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 76 v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
+..++.....+...++.++.+|.+++++|.+|..|.
T Consensus 82 ~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~ 117 (185)
T d1q1ra1 82 VTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPN 117 (185)
T ss_dssp EEEEETTTTEEEETTSCEEECSEEEECCCEEEEEEC
T ss_pred eeeecccccEEEeeceeEEEeeeeeeeeecccCCCC
Confidence 788888888888888899999999999998876554
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.65 E-value=7e-08 Score=86.31 Aligned_cols=102 Identities=11% Similarity=0.007 Sum_probs=63.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc-----cccc-------cc-------ccccc---------
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT-----KTVP-------VT-------KLLSD--------- 54 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~-----~~~~-------~~-------~~~~~--------- 54 (454)
.+|+|||||++|+++|..|++. |++|+|+|+++...... ..+. +. .....
T Consensus 5 ~kV~IiGaG~aGl~~A~~L~~~--G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (265)
T d2voua1 5 DRIAVVGGSISGLTAALMLRDA--GVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG 82 (265)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred CcEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCC
Confidence 5899999999999999999998 99999999975421000 0000 00 00000
Q ss_pred -----------cchhhhHHHH-Hhc--CcEEEc-ceEEEEeCcc--cEEEeccCcEEEecEEEEecCCC
Q psy1545 55 -----------ITVEETDANK-FEG--LCTVIV-DTVAAIDPRV--NCVITEKQNRIKYKTLCICTGAS 106 (454)
Q Consensus 55 -----------~~~~~~~~~~-~~~--~i~~~~-~~v~~i~~~~--~~v~~~~g~~i~~d~lviAtG~~ 106 (454)
.......... +.. +..+.. .+++.++... .++++++|+++++|.+|.|.|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~ 151 (265)
T d2voua1 83 ERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGA 151 (265)
T ss_dssp CEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTT
T ss_pred ceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEecccccc
Confidence 0000111111 222 555554 4777776543 46777899999999999999964
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.63 E-value=5.2e-08 Score=87.20 Aligned_cols=56 Identities=27% Similarity=0.385 Sum_probs=41.1
Q ss_pred CcEEecCEEEEeeccCcC-----cccccC--CCCceecCCCceEeccccccccCceeecCccccc
Q psy1545 259 GHTHACDIVVSAIGVVPN-----SNIQVH--GTPFELAPDCGIGVNELMQTSISNVYAAGDVCTP 316 (454)
Q Consensus 259 g~~~~~D~vi~a~G~~p~-----~~~~~~--~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~ 316 (454)
.+++.+|.+++|||.+|. .+ .+. ..++. +.++.+.+|+..+|.+.++|++||++..
T Consensus 136 ~~~i~a~~iiIATGs~P~~~~~~~~-~~~l~~~~i~-ts~~~~~~d~~~~t~Vig~gaiGdv~~~ 198 (259)
T d1onfa1 136 EEILEGRNILIAVGNKPVGRSPDTE-NLKLEKLNVE-TNNNYIVVDENQRTSVNNIYAVGDCCMV 198 (259)
T ss_dssp ----CBSSEEECCCCCBCCBCCTTT-TSSCTTTTCC-BSSSCEEECTTCBCSSSSEEECSTTEEE
T ss_pred eEEEeeeeEEEecCCCCcccccccc-ccccccceee-ecccccccccCCceeEeeEEEEEEeeeh
Confidence 367999999999999993 33 332 22343 4578899999999999999999999864
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=1.1e-07 Score=74.59 Aligned_cols=90 Identities=18% Similarity=0.137 Sum_probs=65.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+-+|..|+++ |.+|+++++++.+- +.+ +.+......+.+.+ +++++.+ +++.+.
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~--G~~Vtlv~~~~~~l-----~~~-----d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~ 90 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSAL--GSKTSLMIRHDKVL-----RSF-----DSMISTNCTEELENAGVEVLKFSQVKEVK 90 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSC-----TTS-----CHHHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhcC--CcEEEEEeeccccc-----cch-----hhHHHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence 4799999999999999999998 99999999987641 111 22344455566666 9999865 888886
Q ss_pred Cccc--EEEe---ccC------cEEEecEEEEecC
Q psy1545 81 PRVN--CVIT---EKQ------NRIKYKTLCICTG 104 (454)
Q Consensus 81 ~~~~--~v~~---~~g------~~i~~d~lviAtG 104 (454)
.... .+.. ..| ..+.+|.+++|+|
T Consensus 91 ~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 91 KTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp EETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred EcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence 5433 2221 223 2467999999998
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.62 E-value=1.4e-07 Score=79.36 Aligned_cols=102 Identities=20% Similarity=0.234 Sum_probs=62.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc--cc---ccchhhhHHHHHhc-CcEEEcc-
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL--LS---DITVEETDANKFEG-LCTVIVD- 74 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~-~i~~~~~- 74 (454)
.|||+||||||+|++||..+++. |.++++||++. .+.+.+....... .. ...+.......... .++....
T Consensus 1 ~yDViIIGgGpaGl~AAi~aar~--G~~v~iie~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (184)
T d1fl2a1 1 AYDVLIVGSGPAGAAAAIYSARK--GIRTGLMGERF-GGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQ 77 (184)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTT--TCCEEEECSST-TGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSC
T ss_pred CCcEEEECcCHHHHHHHHHHHHc--CCeEEEEEEec-CCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccc
Confidence 38999999999999999999998 99999999863 2222221111111 11 11122222333344 6666543
Q ss_pred eEEEEeCcc-----cEEEeccCcEEEecEEEEecCCC
Q psy1545 75 TVAAIDPRV-----NCVITEKQNRIKYKTLCICTGAS 106 (454)
Q Consensus 75 ~v~~i~~~~-----~~v~~~~g~~i~~d~lviAtG~~ 106 (454)
.+..+.+.. ......++..+..+.+++++|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 114 (184)
T d1fl2a1 78 SASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK 114 (184)
T ss_dssp CEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred eeeeecccccccceeeeeeecceeeeccccccccccc
Confidence 555554322 13334456689999999999964
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.61 E-value=1.8e-07 Score=72.98 Aligned_cols=88 Identities=18% Similarity=0.253 Sum_probs=64.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+-+|..|+++ |.+|+|+++.+.+- +. + +.+......+.+.+ +++++.+ ++..+.
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~l--G~~Vtii~~~~~~l-----~~----~-d~ei~~~l~~~l~~~GV~i~~~~~v~~v~ 91 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRL--GSKVTVVEFQPQIG-----AS----M-DGEVAKATQKFLKKQGLDFKLSTKVISAK 91 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSS-----SS----S-CHHHHHHHHHHHHHTTCEEECSEEEEEEE
T ss_pred CeEEEECCCchHHHHHHHHHhh--CcceeEEEeccccc-----hh----h-hhhhHHHHHHHHHhccceEEeCCEEEEEE
Confidence 5799999999999999999999 99999999987642 11 1 23344555566666 9999855 888876
Q ss_pred Cc--ccE--EEeccC-----cEEEecEEEEe
Q psy1545 81 PR--VNC--VITEKQ-----NRIKYKTLCIC 102 (454)
Q Consensus 81 ~~--~~~--v~~~~g-----~~i~~d~lviA 102 (454)
.. ... ++..++ +++.+|.|++|
T Consensus 92 ~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 92 RNDDKNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp EETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred EeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 43 223 333332 37999999987
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=98.60 E-value=8.4e-08 Score=88.23 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=34.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||+|||+|+||++||.++++++++.+|+|+||.+..
T Consensus 5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~ 42 (311)
T d1kf6a2 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPM 42 (311)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGG
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence 47999999999999999999998788999999998643
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.59 E-value=6.6e-08 Score=87.97 Aligned_cols=36 Identities=22% Similarity=0.160 Sum_probs=34.0
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
|++||+||||||+|+++|..|++. |.+|+|+|+.+.
T Consensus 1 mk~~V~IvGaGp~Gl~~A~~L~~~--G~~v~vlE~~~~ 36 (292)
T d1k0ia1 1 MKTQVAIIGAGPSGLLLGQLLHKA--GIDNVILERQTP 36 (292)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHH--TCCEEEECSSCH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCC
Confidence 889999999999999999999999 999999999863
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.58 E-value=2e-07 Score=86.55 Aligned_cols=107 Identities=13% Similarity=0.080 Sum_probs=62.7
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCC------cEEecCEEEEeeccC--cCcccccC-----------CCCce
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG------HTHACDIVVSAIGVV--PNSNIQVH-----------GTPFE 287 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g------~~~~~D~vi~a~G~~--p~~~~~~~-----------~~~l~ 287 (454)
+..+..+++++.|++++..++ .+.|++.++ .+..+|.||+|+|.. |+.+ .+. .....
T Consensus 124 ~~~~~~I~~~t~V~~v~~~~~---~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s~p~~~-~~~~~~~p~~~~f~~~~~~ 199 (335)
T d2gv8a1 124 QPLLPFIKLATDVLDIEKKDG---SWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYTG-YLYSVPFPSLAKLKSPETK 199 (335)
T ss_dssp GGGGGGEECSEEEEEEEEETT---EEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCCC-BCCCCCCHHHHSCCSTTTC
T ss_pred HHhhhcccCceEEEEEEecCC---EEEEEEEecCCCCeEEEEEeeEEEEcccccccceec-ccccCCCCcchhcccCccc
Confidence 446778999999999988664 456665443 246799999999974 3332 111 11111
Q ss_pred ecCCCceEeccc---cccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 288 LAPDCGIGVNEL---MQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 288 ~~~~g~i~vd~~---~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
+-.+|.-..+-+ +....|++..+|=.... -.......|+..+++-+.++.
T Consensus 200 ~~~~~~~~~~ly~~~~~~~~p~l~f~G~~~~v-----------~~~~~~e~Qa~~~a~~~~g~~ 252 (335)
T d2gv8a1 200 LIDDGSHVHNVYQHIFYIPDPTLAFVGLALHV-----------VPFPTSQAQAAFLARVWSGRL 252 (335)
T ss_dssp CCSSSSSCCSEETTTEETTCTTEEESSCCBSS-----------CHHHHHHHHHHHHHHHHTTSS
T ss_pred eeccccceeeeecccccCCCCceEEeeeEEEE-----------ecCCchHHHHHHHHHHHcCCc
Confidence 111121111212 22456778888844332 123457888888888888765
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.58 E-value=1.7e-07 Score=73.15 Aligned_cols=89 Identities=16% Similarity=0.208 Sum_probs=62.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+-+|..++++ |.+|+|+++++.++ . + +.++.....+.+.+ +|+++.+ .++.+.
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~l--G~~Vtii~~~~~l~------~----~-D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~ 87 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGI--GLDVTVMVRSILLR------G----F-DQDMANKIGEHMEEHGIKFIRQFVPTKIE 87 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSST------T----S-CHHHHHHHHHHHHHTTEEEEESCEEEEEE
T ss_pred CeEEEECCCccHHHHHHHHhhc--CCeEEEEEechhhc------c----C-CHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence 4799999999999999999999 99999998764321 1 1 22344555666766 9999855 777664
Q ss_pred Ccc------cEEEeccC-----cEEEecEEEEecC
Q psy1545 81 PRV------NCVITEKQ-----NRIKYKTLCICTG 104 (454)
Q Consensus 81 ~~~------~~v~~~~g-----~~i~~d~lviAtG 104 (454)
... ..++...+ ..+.+|.|++|+|
T Consensus 88 ~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 88 QIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp EEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred EecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 321 13333221 2467999999998
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=2.3e-08 Score=88.83 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=36.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT 43 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~ 43 (454)
+|||||||||++|++||..|++. |++|+|||+++.+++..
T Consensus 5 ~yDviViGaG~~Gl~~A~~La~~--G~~V~vlE~~~~~GG~~ 44 (297)
T d2bcgg1 5 DYDVIVLGTGITECILSGLLSVD--GKKVLHIDKQDHYGGEA 44 (297)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCGGG
T ss_pred cCCEEEECcCHHHHHHHHHHHHC--CCCEEEEcCCCCCCcce
Confidence 58999999999999999999998 89999999999887654
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.49 E-value=2.9e-07 Score=71.98 Aligned_cols=89 Identities=12% Similarity=0.162 Sum_probs=65.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+-+|..++++ |.+|+++++++.+- +. .+.+......+.+.+ +++++.+ ++..++
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~--G~~Vtvi~~~~~~l-----~~-----~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~ 93 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRI--GSEVTVVEFASEIV-----PT-----MDAEIRKQFQRSLEKQGMKFKLKTKVVGVD 93 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHH--TCEEEEECSSSSSS-----TT-----SCHHHHHHHHHHHHHSSCCEECSEEEEEEE
T ss_pred CeEEEEccchHHHHHHHHHHhc--CCeEEEEEEccccC-----ch-----hhhcchhhhhhhhhcccceEEcCCceEEEE
Confidence 4799999999999999999999 99999999988652 11 122344555666776 9999865 888887
Q ss_pred Cccc--EEEe--c-cC--cEEEecEEEEec
Q psy1545 81 PRVN--CVIT--E-KQ--NRIKYKTLCICT 103 (454)
Q Consensus 81 ~~~~--~v~~--~-~g--~~i~~d~lviAt 103 (454)
..+. .+.+ . +| ..+.+|++++|.
T Consensus 94 ~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 94 TSGDGVKLTVEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp CSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred EccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence 5543 3333 2 33 358999999883
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=98.48 E-value=4.3e-07 Score=81.92 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=34.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
.+||+|||||++|++||++|++. .|++|+|+|+++.+++
T Consensus 33 e~DViVIGaGpaGL~aA~~LA~~-~G~~V~vlE~~~~~GG 71 (278)
T d1rp0a1 33 ETDVVVVGAGSAGLSAAYEISKN-PNVQVAIIEQSVSPGG 71 (278)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTS-TTSCEEEEESSSSCCT
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-cCCeEEEEecCCCCCC
Confidence 58999999999999999999762 3999999999986654
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.47 E-value=2.9e-07 Score=83.75 Aligned_cols=191 Identities=11% Similarity=0.122 Sum_probs=98.8
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccccc---CCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFL---DPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP 210 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~---d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (454)
-+|+|||+|++|+-+|..|. |.+|+++++.+.+-..+. .+...-........ ...... ..... ....
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~-~s~~~~-~~~~~------~~~~ 79 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYC-YSFSEE-VLQEW------NWTE 79 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSS-CCSCHH-HHHHC------CCCB
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceecccccccc-cccccc-ccCCC------CCcc
Confidence 47999999999999999997 999999999876533210 00000000000000 000000 00000 0000
Q ss_pred CCC--CccccccccccCccCCce--EEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCc
Q psy1545 211 SLG--PDWHTQVNLHGSSRDTKI--TIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPF 286 (454)
Q Consensus 211 ~l~--~~~~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l 286 (454)
... +++... +.+..++.++ .|+++++|+++..+++ .....|++.++.++++|.||+|+|.-.... .-...++
T Consensus 80 ~~p~~~e~~~Y--l~~~a~~~~L~~~I~f~t~V~~~~~de~-~~~W~V~~~~~~~~~~~~~i~atG~ls~~~-~p~~~~~ 155 (298)
T d1w4xa1 80 RYASQPEILRY--INFVADKFDLRSGITFHTTVTAAAFDEA-TNTWTVDTNHGDRIRARYLIMASGQLSDAL-TGALFKI 155 (298)
T ss_dssp SSCBHHHHHHH--HHHHHHHTTGGGGEECSCCEEEEEEETT-TTEEEEEETTCCEEEEEEEEECCCSCCCCT-THHHHTS
T ss_pred ccCccchHHHH--HHHHHHHcCCcccccCCcEEEEEEEecC-CCceeeccccccccccceEEEeeccccccc-CCccccc
Confidence 000 111111 2233344566 5889999999985432 346899999999999999999999743321 1111133
Q ss_pred eecCCCceEeccc----cc-------cccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhc
Q psy1545 287 ELAPDCGIGVNEL----MQ-------TSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMV 345 (454)
Q Consensus 287 ~~~~~g~i~vd~~----~~-------t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 345 (454)
++-..+++...+. .+ .+.||.|.++--.... . .......+..|+..+++.|.
T Consensus 156 ~i~g~~g~~l~~~W~~~p~ty~G~~v~gfPN~f~~~Gp~s~~-~------~~~~~~~~e~q~~~i~~~i~ 218 (298)
T d1w4xa1 156 DIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPS-A------LSNMLVSIEQHVEWVTDHIA 218 (298)
T ss_dssp EEECGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSG-G------GSCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCeeehhhchhhHHHHHHHhcCCCCeEEEecCCCCcc-c------cccHHHHHHHHHHHHHHHHH
Confidence 3322233332221 11 2579999874221111 0 01123446677777777655
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.47 E-value=3.8e-07 Score=74.03 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=28.0
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CC-cEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NV-DIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~-~V~~i~~~~~~ 168 (454)
+++|+|||||.+|+|+|..+. |+ .|++++|++..
T Consensus 45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~ 81 (153)
T d1gtea3 45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV 81 (153)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred CCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence 579999999999999998764 55 58898887643
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.43 E-value=4.1e-08 Score=83.68 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=57.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAI 79 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i 79 (454)
.+|+|||||++||+||..|+++ |+ +|+|+|+++..++.+....... ................ ...+... .+
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~--G~~~V~v~E~~~~~gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v--- 78 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARL--GYSDITIFEKQEYVGGLSTSEIPQF-RLPYDVVNFEIELMKDLGVKIICGKSL--- 78 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSSSCSTHHHHTSCTT-TSCHHHHHHHHHHHHTTTCEEEESCCB---
T ss_pred CEEEEECChHHHHHHHHHHHHC--CCCeEEEEEecCcccchhhhhcccc-ccccccccchhhhhhccceeEEeeEEe---
Confidence 5899999999999999999998 87 5999999998876444322211 1112222222222223 4444322 21
Q ss_pred eCcccEEEeccCcEEEecEEEEecCCCC
Q psy1545 80 DPRVNCVITEKQNRIKYKTLCICTGASP 107 (454)
Q Consensus 80 ~~~~~~v~~~~g~~i~~d~lviAtG~~p 107 (454)
... .....+.....++.+++|+|..+
T Consensus 79 ~~~--~~~~~~~~~~~~~~~~ia~g~~~ 104 (196)
T d1gtea4 79 SEN--EITLNTLKEEGYKAAFIGIGLPE 104 (196)
T ss_dssp STT--SBCHHHHHHTTCCEEEECCCCCE
T ss_pred ccc--eeeeehhhccccceeeEEecccc
Confidence 111 11111223456899999999753
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.38 E-value=1.3e-07 Score=86.37 Aligned_cols=38 Identities=21% Similarity=0.540 Sum_probs=35.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
+|+||||||++|++||+.|++. |.+|+|+|+++++++.
T Consensus 2 ~dv~IIGaG~sGl~~A~~L~~~--g~~V~iiEk~~~iGG~ 39 (298)
T d1i8ta1 2 YDYIIVGSGLFGAVCANELKKL--NKKVLVIEKRNHIGGN 39 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHGGG--TCCEEEECSSSSSSGG
T ss_pred ccEEEECCcHHHHHHHHHHHhC--CCcEEEEECCCCcccc
Confidence 8999999999999999999998 8999999999988763
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.36 E-value=4.7e-07 Score=68.78 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=35.3
Q ss_pred ceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 115 HVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
.+++.....+...+ .+|+|+|||+|.+|+++|..|+ +.+++++.|++.
T Consensus 17 ~i~Hs~~y~~~~~f-----~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~ 66 (107)
T d2gv8a2 17 SVLHSSLFREPELF-----VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG 66 (107)
T ss_dssp SEEEGGGCCCGGGG-----TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred cEEECCcCcchhhc-----CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence 34444444444444 3899999999999999999997 677777776554
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=98.36 E-value=1.9e-07 Score=77.75 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=32.6
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS 169 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~ 169 (454)
.+|+|+|||+|+.|+++|..|+ |.+|+++++.+.+-
T Consensus 42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~G 79 (179)
T d1ps9a3 42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIG 79 (179)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSC
T ss_pred CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccC
Confidence 4899999999999999999996 99999999987664
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.35 E-value=1.2e-07 Score=89.59 Aligned_cols=40 Identities=30% Similarity=0.386 Sum_probs=35.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhc----CCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFL----HPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~----~~g~~v~lie~~~~~~~ 41 (454)
++|||||||||||++||+.|+++ ..|++|+|||++..++.
T Consensus 32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~ 75 (380)
T d2gmha1 32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGA 75 (380)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTT
T ss_pred cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCC
Confidence 58999999999999999999972 24999999999988754
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.22 E-value=2.9e-06 Score=75.97 Aligned_cols=35 Identities=34% Similarity=0.573 Sum_probs=31.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~~~ 39 (454)
+||+|||||+||+++|..|++. |. +|+|+|+++..
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~--Gi~~V~V~Er~~~~ 37 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQA--GIGKVTLLESSSEI 37 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESSSSC
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCCeEEEEeCCCCC
Confidence 6899999999999999999998 85 89999998764
|
| >d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.18 E-value=3.7e-06 Score=62.14 Aligned_cols=82 Identities=16% Similarity=0.224 Sum_probs=66.2
Q ss_pred eeeeeecCeEEEEeecccCCcCCCCceEEEeecC--CccEEEEEEECCeEEEEEEEcCCchHHHHHHHHhcCCCcchhhh
Q psy1545 363 THMTKFFGYKVILLGLFNGQTLENDYEILLRVTR--GEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIAD 440 (454)
Q Consensus 363 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~--~~~~~k~~~~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~~~ 440 (454)
.+|+.+||.++..+|...... +.+.+... ...|+-++.++|+++|+..+|.......++.+|.++..++. +
T Consensus 10 ~FWSdQ~d~~iq~~G~~~~~~-----~~v~~~~~~~~~~f~~~y~~~g~lvgv~~vn~~~~~~~~rrli~~~~~~~~--~ 82 (97)
T d1d7ya3 10 WYWSDQGALRIQVAGLASGDE-----EIVRGEVSLDAPKFTLIELQKGRIVGATCVNNARDFAPLRRLLAVGAKPDR--A 82 (97)
T ss_dssp EEEEEETTEEEEEEECSCCSE-----EEEEEECCSSSCEEEEEEEETTEEEEEEEESCHHHHHHHHHHHHTTCCCCH--H
T ss_pred cEEeccCCCeeEEEecCCCCC-----EEEEeccCCCCCeEEEEEEeCCEEEEEEEeCCHHHHHHHHHHHHCCCCCCH--H
Confidence 368999999999999965321 23333322 34588888899999999999998888999999999999986 7
Q ss_pred hccCCCCCCCC
Q psy1545 441 DLLNPNIDIDD 451 (454)
Q Consensus 441 ~~~~~~~~~~~ 451 (454)
.|.||+++|++
T Consensus 83 ~LaD~~~~Lk~ 93 (97)
T d1d7ya3 83 ALADPATDLRK 93 (97)
T ss_dssp HHHSSCCHHHH
T ss_pred HhcCCCCCHHH
Confidence 89999999875
|
| >d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.18 E-value=4.9e-06 Score=62.15 Aligned_cols=83 Identities=11% Similarity=0.215 Sum_probs=68.2
Q ss_pred eeeeeecCeEEEEeecccCCcCCCCceEEEeecC-CccEEEEEEECCeEEEEEEEcCCchHHHHHHHHhcCCCcchhhhh
Q psy1545 363 THMTKFFGYKVILLGLFNGQTLENDYEILLRVTR-GEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADD 441 (454)
Q Consensus 363 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~~~~k~~~~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~~~~ 441 (454)
.+|+.+||.++..+|...... +++++.+. +..|.-+++++|+++|+..+|.......++.+|.++..++. +.
T Consensus 9 ~FWSdQ~d~~lQ~~G~~~~~d-----~~v~rg~~~~~~f~~~y~~~~~lvav~~vn~~~~~~~~r~li~~~~~~~~--~~ 81 (103)
T d1q1ra3 9 WFWSDQYEIGLKMVGLSEGYD-----RIIVRGSLAQPDFSVFYLQGDRVLAVDTVNRPVEFNQSKQIITDRLPVEP--NL 81 (103)
T ss_dssp EEEEEETTEEEEEEECCTTCS-----EEEEEEETTTTEEEEEEEETTEEEEEEEESCHHHHHHHHHHHHTTCCCCH--HH
T ss_pred cEeeecCCCeeEEEECCCCCc-----eEEEecCCCCCeEEEEEEeCCeEEEEEEeCCHHHHHHHHHHHHCCCCcCH--HH
Confidence 468999999999999965322 33445443 45688888899999999999998889999999999999986 78
Q ss_pred ccCCCCCCCCC
Q psy1545 442 LLNPNIDIDDY 452 (454)
Q Consensus 442 ~~~~~~~~~~~ 452 (454)
|.+|+++|++.
T Consensus 82 L~D~~~~Lk~L 92 (103)
T d1q1ra3 82 LGDESVPLKEI 92 (103)
T ss_dssp HTCTTSCHHHH
T ss_pred hcCCCCCHHHH
Confidence 99999998764
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.15 E-value=3.6e-06 Score=72.97 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=41.2
Q ss_pred CCCCC-CceeeeeccchHHHHHHHh---------hcCCeEEEEcCchhHHHHHHHhcC----------------------
Q psy1545 109 KIWYS-PHVITIRDTDSVAVLQEKL---------KSAKKIVVIGNGGIATELVHELSN---------------------- 156 (454)
Q Consensus 109 ~~~~~-~~~~~~~~~~~~~~l~~~~---------~~~~~vvVvG~G~~g~e~a~~l~g---------------------- 156 (454)
.+++| ++.-++.+..++....+.. ..+++++|||+|.+|+++|..+..
T Consensus 3 ~L~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g 82 (225)
T d1cjca1 3 ALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSR 82 (225)
T ss_dssp CCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCC
T ss_pred CCCCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccC
Confidence 34555 3333444555555443221 137999999999999999987741
Q ss_pred -CcEEEEEeCCCccc
Q psy1545 157 -VDIVWVVKDKHISA 170 (454)
Q Consensus 157 -~~V~~i~~~~~~~~ 170 (454)
.+|+++.|+.....
T Consensus 83 ~~~V~iv~RRg~~~~ 97 (225)
T d1cjca1 83 VKTVWIVGRRGPLQV 97 (225)
T ss_dssp CCEEEEECSSCGGGC
T ss_pred CCeEEEEEEcChHhC
Confidence 47999998876544
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=7.8e-07 Score=82.57 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=35.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
+.+|||||||++||+||+.|++. |++|+|+|+++.+++.
T Consensus 5 ~~kViVIGaG~aGL~aA~~L~~~--G~~V~VlEa~~r~GGr 43 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAARQLQSF--GMDVTLLEARDRVGGR 43 (449)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHT--TCEEEEECSSSSSBTT
T ss_pred CCcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCCCCccc
Confidence 46899999999999999999998 8999999999988763
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.12 E-value=3.9e-06 Score=73.07 Aligned_cols=36 Identities=17% Similarity=0.417 Sum_probs=31.6
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS 169 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~ 169 (454)
++|+|+|||+|.+|+++|.++. +++++++.|.+...
T Consensus 31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~~~ 68 (235)
T d1w4xa2 31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFA 68 (235)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCE
T ss_pred CCCEEEEECCCccHHHHHHHHHhhhcccccccccccee
Confidence 4899999999999999999996 88888888776554
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=98.11 E-value=1e-06 Score=78.10 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=32.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
+.||||||||++|+++|+.|+++ |.+|+|+|++...
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~--G~~V~vier~~~~ 41 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARK--GYSVHILARDLPE 41 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSCTT
T ss_pred CCcEEEECccHHHHHHHHHHHHC--CCCEEEEeCCCCC
Confidence 36899999999999999999998 8899999997654
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.05 E-value=1.5e-06 Score=79.58 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=35.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
.+|+|||||++|++||..|++. |.+|+|+|+++++++.
T Consensus 3 KKI~IIGaG~sGL~aA~~L~k~--G~~V~viEk~~~iGG~ 40 (314)
T d2bi7a1 3 KKILIVGAGFSGAVIGRQLAEK--GHQVHIIDQRDHIGGN 40 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSSSGG
T ss_pred CEEEEECCcHHHHHHHHHHHhC--CCCEEEEECCCCCcCe
Confidence 5799999999999999999998 8999999999988764
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.02 E-value=2.1e-06 Score=78.55 Aligned_cols=43 Identities=19% Similarity=0.192 Sum_probs=37.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK 44 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~ 44 (454)
++||+||||||+|++||+.|+++.+|++|+|+|+++.+++...
T Consensus 50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T d2gjca1 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW 92 (311)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeE
Confidence 4799999999999999999998767999999999988776443
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=97.97 E-value=1.4e-05 Score=70.70 Aligned_cols=136 Identities=15% Similarity=0.205 Sum_probs=77.9
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc-----cCCcchhhhHHHhhccCCCChhh--hhhhccccc
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF-----LDPGAAEFFQDSINKTNTAKPET--IFKRMRYNT 204 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~-----~d~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~ 204 (454)
..+||+|||+|+.|+-+|..|+ |.+|+++++.+...... +.+.....+.+ +. ...... ......+..
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~-~g---~~~~~~~~~~~~~~~~~ 78 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLE-QG---VELDSISVPSSSMEYVD 78 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHH-TT---CCGGGTCBCCCEEEEEE
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHH-cC---cchhhhccCCCcceeEe
Confidence 3689999999999999999996 99999999976543221 12222222211 10 000000 000000000
Q ss_pred CCCCCCCCC---Ccc-c-cccccc-cCc-cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 205 GGEKGPSLG---PDW-H-TQVNLH-GSS-RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 205 ~~~~~~~l~---~~~-~-~~~~~~-~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
...+.... ... . ....+. ..+ ...++.++.+..+.++....+ .+.++++||+++++|++|.|.|.....
T Consensus 79 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~v~v~~~dG~~~~~d~~v~adG~~s~~ 154 (265)
T d2voua1 79 -ALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSE---TVQMRFSDGTKAEANWVIGADGGASVV 154 (265)
T ss_dssp -TTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSS---CEEEEETTSCEEEESEEEECCCTTCHH
T ss_pred -ccCCceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCC---ceEEEECCCCEEEEEEEeccccccccc
Confidence 00000000 000 0 000000 111 335688999999999987664 578999999999999999999987644
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=97.93 E-value=3.4e-06 Score=78.98 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=33.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
+||+||||+|++|+++|.+|++. |++|+|+|+....
T Consensus 4 ~yDviIVGsG~aG~v~A~~La~~--G~kVlvLEaG~~~ 39 (379)
T d2f5va1 4 KYDVVIVGSGPIGCTYARELVGA--GYKVAMFDIGEID 39 (379)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCC
T ss_pred cccEEEECcCHHHHHHHHHHhhC--CCeEEEEecCCCC
Confidence 79999999999999999999997 9999999997654
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.92 E-value=2.7e-05 Score=63.14 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=50.6
Q ss_pred cEEEE--CCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEE
Q psy1545 4 TYLII--GGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAI 79 (454)
Q Consensus 4 dvvII--GgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i 79 (454)
.++|+ |||+.|+.+|..|+++ |.+|+|+++.+.+... . .........+.+.+ +++++.+ ++..+
T Consensus 41 ~vvi~d~ggg~ig~e~A~~la~~--G~~Vtlv~~~~~~~~~---------~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i 108 (156)
T d1djqa2 41 RVVILNADTYFMAPSLAEKLATA--GHEVTIVSGVHLANYM---------H-FTLEYPNMMRRLHELHVEELGDHFCSRI 108 (156)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHT--TCEEEEEESSCTTTHH---------H-HTTCHHHHHHHHHHTTCEEEETEEEEEE
T ss_pred ceEEEecCCChHHHHHHHHHHHc--CCeEEEEecCCccccc---------c-chhHHHHHHHHHhhccceEEeccEEEEe
Confidence 35555 9999999999999999 9999999998754211 1 11122334455555 9999855 88999
Q ss_pred eCcccEEE
Q psy1545 80 DPRVNCVI 87 (454)
Q Consensus 80 ~~~~~~v~ 87 (454)
+.+...+.
T Consensus 109 ~~~~v~l~ 116 (156)
T d1djqa2 109 EPGRMEIY 116 (156)
T ss_dssp ETTEEEEE
T ss_pred cCcceEEE
Confidence 87764443
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.88 E-value=4.4e-06 Score=77.78 Aligned_cols=40 Identities=30% Similarity=0.505 Sum_probs=34.1
Q ss_pred CcccEEEECCCHHHHHHHHHHhhc--CCCCeEEEECCCCccc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFL--HPGESIGLVTPSGIVK 40 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~--~~g~~v~lie~~~~~~ 40 (454)
|++||||||+|+||++||.+|++. .+|.+|+||||.+..+
T Consensus 20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~g 61 (356)
T d1jnra2 20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVER 61 (356)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTT
T ss_pred EecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCC
Confidence 468999999999999999999762 2489999999987654
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=5.9e-06 Score=76.19 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=34.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
++||+|||+|+||++||.++++. |.+|+|+||.+..++
T Consensus 7 ~~DVlVVG~G~AGl~AAl~aa~~--G~~V~lleK~~~~gg 44 (330)
T d1neka2 7 EFDAVVIGAGGAGMRAALQISQS--GQTCALLSKVFPTRS 44 (330)
T ss_dssp EESCEEECCSHHHHHHHHHHHHT--TCCCEEECSSCGGGS
T ss_pred cCCEEEECcCHHHHHHHHHHHHc--CCeEEEEeCCCCCCC
Confidence 48999999999999999999998 889999999887654
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=97.76 E-value=8.7e-06 Score=75.47 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=32.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhc---CCCCeEEEECCCCccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFL---HPGESIGLVTPSGIVK 40 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~---~~g~~v~lie~~~~~~ 40 (454)
|||+|||||++|+++|..|++. ..|.+|+|+|+.+.+.
T Consensus 8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~ 48 (360)
T d1pn0a1 8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV 48 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence 8999999999999999999741 2399999999987653
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.75 E-value=5.9e-05 Score=61.39 Aligned_cols=99 Identities=18% Similarity=0.122 Sum_probs=56.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEE-CCC----------Cccccccc----ccc--------------cccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLV-TPS----------GIVKAVTK----TVP--------------VTKLLS 53 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~li-e~~----------~~~~~~~~----~~~--------------~~~~~~ 53 (454)
.+|+|||||..|+-+|..+++. |.+++.. .+. ........ ... ....+
T Consensus 30 krVvVIGgG~~g~d~a~~~~r~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~- 106 (162)
T d1ps9a2 30 NKVAIIGCGGIGFDTAMYLSQP--GESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGL- 106 (162)
T ss_dssp SEEEEECCHHHHHHHHHHHTCC--SSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTS-
T ss_pred CceEEEcCchhHHHHHHHHHHc--CCccceeHhhhhhhccCCcchhhhcccccccceeccccceEEEEEeccchhcccc-
Confidence 4799999999999999999998 5432211 100 00000000 000 00000
Q ss_pred ccchhhhHHHHHhc-CcEEEcc-eEEEEeCcccEEEeccC-cEEEecEEEEecC
Q psy1545 54 DITVEETDANKFEG-LCTVIVD-TVAAIDPRVNCVITEKQ-NRIKYKTLCICTG 104 (454)
Q Consensus 54 ~~~~~~~~~~~~~~-~i~~~~~-~v~~i~~~~~~v~~~~g-~~i~~d~lviAtG 104 (454)
...........+.. +++++.+ ++..++.+...+...+. ..+.+|.+|+|+|
T Consensus 107 ~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~gv~~~~~g~e~~i~aD~Vv~A~G 160 (162)
T d1ps9a2 107 GKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAG 160 (162)
T ss_dssp CTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCC
T ss_pred chhhhHHHHHHHhhCCeEEEeeeEEEEEcCCCCEEecCCeEEEEECCEEEECCC
Confidence 00111122333444 8998855 88899987766655332 2589999999999
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=97.75 E-value=2.8e-05 Score=66.67 Aligned_cols=116 Identities=13% Similarity=0.123 Sum_probs=66.0
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCC-CccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDK-HISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLG 213 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~-~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 213 (454)
.|+|||||+.|+|+|...+ |.++-+++.+. .+.....+|.........+.+. +. +-+
T Consensus 4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~re-------------------id-~kG 63 (230)
T d2cula1 4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERA-------------------YD-PKD 63 (230)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHH-------------------CC-TTC
T ss_pred cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeee-------------------ee-ccc
Confidence 4899999999999998886 99999998642 1111111222111110000000 00 001
Q ss_pred Cc-cccccccccCc-cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 214 PD-WHTQVNLHGSS-RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 214 ~~-~~~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
+. |..+..+.+.+ ...+++++.. .|..+...+ +....|++.+|.++.+..||++||.--
T Consensus 64 ~av~a~raQ~k~~l~~~~nL~i~q~-~V~dli~e~--~~v~gV~t~~G~~~~AkaVILtTGTFL 124 (230)
T d2cula1 64 ERVWAFHARAKYLLEGLRPLHLFQA-TATGLLLEG--NRVVGVRTWEGPPARGEKVVLAVGSFL 124 (230)
T ss_dssp CCHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEET--TEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred hhhhhHHHHHHHHHhhhcCHHHHhc-cceeeEecc--cceeeEEeccccEEEEeEEEEccCcce
Confidence 10 11111111111 4468998877 455655444 236678999999999999999999743
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.66 E-value=0.00012 Score=62.59 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=28.4
Q ss_pred CCeEEEEcCchhHHHHHHHhc-----------------------CCcEEEEEeCCCcc
Q psy1545 135 AKKIVVIGNGGIATELVHELS-----------------------NVDIVWVVKDKHIS 169 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~-----------------------g~~V~~i~~~~~~~ 169 (454)
+++++|||+|.+|+++|..++ -.+|+++.|+....
T Consensus 39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~~ 96 (216)
T d1lqta1 39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQ 96 (216)
T ss_dssp SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGG
T ss_pred CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChHh
Confidence 689999999999999997552 34699999876543
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.62 E-value=0.00027 Score=62.55 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=63.1
Q ss_pred CCceEEEeCceEEEEEcCCCCccceEEEecCC----cEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccc
Q psy1545 228 DTKITIEYSCEVERIVDSEDDTCNAYVKLTNG----HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTS 303 (454)
Q Consensus 228 ~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g----~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~ 303 (454)
..++.+..++.++.+...++ .+.+.+.+| +++.+|+++.|-|............ ............
T Consensus 118 ~~~~~~~~~~~v~~~~~~~~---~v~v~~~~g~~~~~~~~ad~vi~ADG~~S~vr~~~~~~-------~~~~~~~~~~~~ 187 (288)
T d3c96a1 118 LGQQAVRTGLGVERIEERDG---RVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPD-------QRPLRDPLPHWG 187 (288)
T ss_dssp HCTTSEEESEEEEEEEEETT---EEEEEEEETTSCEEEEEESEEEECCCTTCHHHHHHCTT-------CCCCCCCCSCCC
T ss_pred ccCeeeecCcEEEEeeecCC---cEEEEEEcCCCCeEEEeeceeeccCCccceeeeeeccc-------cccccccccccc
Confidence 35788999999988887653 466777665 5799999999999876443111100 000001112234
Q ss_pred cCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 304 ISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 304 ~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
..++..+||++....+..+ .....|+..+...+..+..
T Consensus 188 ~~~~~~~gda~h~~~p~~g-----~G~~~ai~d~~~l~~~l~~ 225 (288)
T d3c96a1 188 RGRITLLGDAAHLMYPMGA-----NGASQAILDGIELAAALAR 225 (288)
T ss_dssp BTTEEECTHHHHCCCSSTT-----CTHHHHHHHHHHHHHHHHH
T ss_pred cCcceecccccceeCCccc-----cchhhhhhhHHHHHHHHhh
Confidence 5678999999875433222 1234566677777766653
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.59 E-value=4.3e-05 Score=66.10 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=29.1
Q ss_pred CeEEEEcCchhHHHHHHHhc----CCcEEEEEeCCCc
Q psy1545 136 KKIVVIGNGGIATELVHELS----NVDIVWVVKDKHI 168 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~~~ 168 (454)
.||+|||+|+.|+.+|..|+ +.+|+++++.+.+
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~ 38 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP 38 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 38999999999999999884 7799999988765
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=97.56 E-value=0.0012 Score=59.60 Aligned_cols=92 Identities=20% Similarity=0.131 Sum_probs=63.2
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEE---ecCCc--EEecCEEEEeeccC-----cCcc---------cccCCC
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVK---LTNGH--THACDIVVSAIGVV-----PNSN---------IQVHGT 284 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~---~~~g~--~~~~D~vi~a~G~~-----p~~~---------~~~~~~ 284 (454)
+..+..+|+++.++.+.++..++ +....+. ..+|+ .+.++.||+|||-- .++. .+....
T Consensus 143 ~~~~~~~v~i~~~~~v~~Ll~d~--g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~a 220 (311)
T d1kf6a2 143 TSLQFPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSH 220 (311)
T ss_dssp HHTTCTTEEEEETEEEEEEEEET--TEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTT
T ss_pred HHHccCcceeEeeeEeeeeEecC--CcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhc
Confidence 34466789999999999987655 2343333 34563 46899999999842 2211 011234
Q ss_pred CceecCCCceEeccccccccCceeecCcccccC
Q psy1545 285 PFELAPDCGIGVNELMQTSISNVYAAGDVCTPS 317 (454)
Q Consensus 285 ~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~ 317 (454)
|.++.+-.+|.++++..++.+++|+.|++....
T Consensus 221 Ga~l~dme~iq~~p~~~~~~~~~~~~~~~~~~g 253 (311)
T d1kf6a2 221 GVPLRDMGGIETDQNCETRIKGLFAVGECSSVG 253 (311)
T ss_dssp TCCEESCCEEECCTTSBCSSBTEEECGGGEECS
T ss_pred ccceeecccccccccchhcccCCCcCcceeeee
Confidence 566655678888888889999999999987644
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=97.46 E-value=3.7e-05 Score=71.75 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=32.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++|+||||+|++|+.+|.+|++. |.+|+|+|+...
T Consensus 7 ~~dvIVVGsG~aG~v~A~rLaea--G~~VlvLEaG~~ 41 (370)
T d3coxa1 7 RVPALVIGSGYGGAVAALRLTQA--GIPTQIVEMGRS 41 (370)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCC
T ss_pred CCCEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCCC
Confidence 48999999999999999999997 999999999743
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=97.36 E-value=6.4e-05 Score=69.88 Aligned_cols=35 Identities=26% Similarity=0.571 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.||+||||+|+||+.+|.+|++. +.+|+|||+...
T Consensus 2 ~YD~IIVGsG~aG~v~A~rLae~--g~~VlvLEaG~~ 36 (360)
T d1kdga1 2 PYDYIIVGAGPGGIIAADRLSEA--GKKVLLLERGGP 36 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCC
T ss_pred cCCEEEECcCHHHHHHHHHHhhC--CCeEEEEEccCC
Confidence 58999999999999999999997 889999999853
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=97.35 E-value=5.9e-05 Score=70.19 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.||||||+|++|+.+|.+|++. |++|+|||+...
T Consensus 3 v~VIVVGsG~aG~v~A~rLaea--G~~VlvLEaG~~ 36 (367)
T d1n4wa1 3 VPAVVIGTGYGAAVSALRLGEA--GVQTLMLEMGQL 36 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCC
T ss_pred CeEEEeCcCHHHHHHHHHHHHC--cCeEEEEecCCC
Confidence 5899999999999999999997 999999999753
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.31 E-value=0.00057 Score=54.64 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=28.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~~ 38 (454)
.+|||||||..|+-+|..+.++ +. +|+++.+.+.
T Consensus 46 ~kVvVIGGGdtA~D~A~~a~r~--GA~~V~vi~rr~~ 80 (153)
T d1gtea3 46 GAVIVLGAGDTAFDCATSALRC--GARRVFLVFRKGF 80 (153)
T ss_dssp SEEEEECSSHHHHHHHHHHHHT--TCSEEEEECSSCG
T ss_pred CEEEEECCChhHHHHHHHHHHc--CCcceeEEEeCCh
Confidence 4799999999999999999998 54 5888877654
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=97.25 E-value=9e-05 Score=69.52 Aligned_cols=37 Identities=24% Similarity=0.477 Sum_probs=32.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
.||+||||||.||+.+|.+|.+. ++.+|+|||+.+..
T Consensus 17 tyD~IIVGsG~aG~vlA~rLse~-~~~~VLvLEaG~~~ 53 (385)
T d1cf3a1 17 TVDYIIAGGGLTGLTTAARLTEN-PNISVLVIESGSYE 53 (385)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTS-TTCCEEEEESSCCC
T ss_pred eEEEEEECcCHHHHHHHHHHHHC-CCCeEEEECCCCCC
Confidence 48999999999999999999986 46899999998653
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=97.23 E-value=9.9e-05 Score=69.35 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=32.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
.||+||||||+||+.+|.+|++. ++.+|+|||+.+..
T Consensus 24 tyD~IIVGsG~aG~vlA~rLae~-~~~~VLlLEaG~~~ 60 (391)
T d1gpea1 24 TYDYIIAGGGLTGLTVAAKLTEN-PKIKVLVIEKGFYE 60 (391)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTS-TTCCEEEEESSCCC
T ss_pred eeeEEEECcCHHHHHHHHHHHHC-CCCeEEEEcCCCCC
Confidence 38999999999999999999987 45799999999753
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=97.17 E-value=0.00015 Score=67.03 Aligned_cols=34 Identities=21% Similarity=0.464 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
||+||||||+||+.+|.+|++ ..+|+|||+.+..
T Consensus 27 YD~IIVGsG~aG~vlA~rLae---~~kVLvLEaG~~~ 60 (351)
T d1ju2a1 27 YDYVIVGGGTSGCPLAATLSE---KYKVLVLERGSLP 60 (351)
T ss_dssp EEEEEECCSTTHHHHHHHHTT---TSCEEEECSSBCG
T ss_pred ccEEEECccHHHHHHHHHhcC---CCCEEEEecCCCC
Confidence 899999999999999999997 4799999999753
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=0.0031 Score=48.38 Aligned_cols=88 Identities=16% Similarity=0.162 Sum_probs=59.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEc-ceEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIV-DTVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~-~~v~~i~ 80 (454)
.+|+|||||-+++-.|..|.+. ..+|+++-+.+.+.. .........+.... ++.++. ..+..+.
T Consensus 28 k~V~VvGgGdsA~e~A~~L~~~--a~~V~li~r~~~~~~------------~~~~~~~~~~~~~~~~i~~~~~~~v~~i~ 93 (126)
T d1trba2 28 QKVAVIGGGNTAVEEALYLSNI--ASEVHLIHRRDGFRA------------EKILIKRLMDKVENGNIILHTNRTLEEVT 93 (126)
T ss_dssp SEEEEECSSHHHHHHHHHHTTT--SSEEEEECSSSSCCC------------CHHHHHHHHHHHHTSSEEEECSCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHhhc--CCcEEEEeecccccc------------hhHHHHHHHHhhcccceeEecceEEEEEE
Confidence 5799999999999999999997 889999988765421 00111222223333 777764 4777776
Q ss_pred Cccc---EEEeccC------cEEEecEEEEecC
Q psy1545 81 PRVN---CVITEKQ------NRIKYKTLCICTG 104 (454)
Q Consensus 81 ~~~~---~v~~~~g------~~i~~d~lviAtG 104 (454)
.++. .|++.+. +.+..|-|+++.|
T Consensus 94 G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 94 GDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp ECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred CCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence 6543 2444321 3689999999987
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.12 E-value=3.8e-05 Score=66.71 Aligned_cols=37 Identities=14% Similarity=0.279 Sum_probs=32.8
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccc
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISA 170 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~ 170 (454)
.+++++|||||+.|+.+|..|+ |.+|+++++.+.+-.
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG 86 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGG 86 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT
T ss_pred CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCC
Confidence 3799999999999999999986 999999998886643
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.0018 Score=49.79 Aligned_cols=84 Identities=19% Similarity=0.248 Sum_probs=59.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc--CcEEEc-ceEEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG--LCTVIV-DTVAAI 79 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~-~~v~~i 79 (454)
.+|+|||||.+.+-.|..|.+. ..+|+|+.+.+.+.. .....+.+.. +|+++. ..+..+
T Consensus 31 k~V~VvGgG~sA~~~A~~L~~~--a~~V~li~r~~~~~~----------------~~~~~~~~~~~~~I~v~~~~~v~~i 92 (126)
T d1fl2a2 31 KRVAVIGGGNSGVEAAIDLAGI--VEHVTLLEFAPEMKA----------------DQVLQDKLRSLKNVDIILNAQTTEV 92 (126)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--BSEEEEECSSSSCCS----------------CHHHHHHHHTCTTEEEESSEEEEEE
T ss_pred ceEEEEeCCHHHHHHHHhhhcc--CCceEEEeccccccc----------------ccccccccccccceeEEcCcceEEE
Confidence 5899999999999999999997 779999988765421 0112333443 799874 478887
Q ss_pred eCccc---EEEec---cC--cEEEecEEEEecC
Q psy1545 80 DPRVN---CVITE---KQ--NRIKYKTLCICTG 104 (454)
Q Consensus 80 ~~~~~---~v~~~---~g--~~i~~d~lviAtG 104 (454)
..+.. .+.+. +| +++..|.++++.|
T Consensus 93 ~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG 125 (126)
T d1fl2a2 93 KGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG 125 (126)
T ss_dssp EESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred EccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence 75432 23333 23 3689999999987
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.02 E-value=4.4e-05 Score=66.38 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=25.9
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCe------EEEECCCC
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGES------IGLVTPSG 37 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~------v~lie~~~ 37 (454)
+|+|||||++|+++|++|++. |.+ +++++++.
T Consensus 2 kV~VIGaGi~GlstA~~L~~~--G~~v~v~e~~~i~~~~~ 39 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHER--YHSVLQPLDVKVYADRF 39 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHH--HTTTSSSCEEEEEESCC
T ss_pred EEEEECchHHHHHHHHHHHHC--CCCceEEeeeeecccCC
Confidence 699999999999999999998 544 55555443
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.96 E-value=0.00011 Score=63.48 Aligned_cols=35 Identities=14% Similarity=0.017 Sum_probs=30.1
Q ss_pred CCeEEEEcCchhHHHHHHHhc--C-------CcEEEEEeCCCcc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--N-------VDIVWVVKDKHIS 169 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g-------~~V~~i~~~~~~~ 169 (454)
|.||+|||+|++|+.+|..|+ | .+|+++++.+.+-
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~G 45 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW 45 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCC
Confidence 679999999999999999885 3 5899999977544
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.95 E-value=0.0011 Score=61.49 Aligned_cols=114 Identities=12% Similarity=0.050 Sum_probs=65.5
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEec---------------CCcEEecCEEEEeeccCcCcc-cccCCCCc--ee
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLT---------------NGHTHACDIVVSAIGVVPNSN-IQVHGTPF--EL 288 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---------------~g~~~~~D~vi~a~G~~p~~~-~~~~~~~l--~~ 288 (454)
+..|+++..+..+.++...++ +....+... .+.....+..+++.|.+.... .++....+ ..
T Consensus 152 e~~g~~~~~~~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~ 230 (380)
T d2gmha1 152 EALGVEVYPGYAAAEILFHED-GSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANC 230 (380)
T ss_dssp HHTTCEEETTCCEEEEEECTT-SSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTS
T ss_pred hhccceeeeecceeeeeeccC-CceeecccccccccccccccccccccccccccEEEEeeeCCCcchHHHHhhhhhcccc
Confidence 567899999999988876553 222222211 113455778888888765432 12211111 11
Q ss_pred cCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 289 APDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 289 ~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
...+++. .--+...+++..+||+++.-.+.. ..-.+.|+..|+.||+.+...+
T Consensus 231 ~~~~G~~--sip~l~~~G~lLVGDAAG~vnP~~-----g~GI~~Am~SG~lAAeai~~al 283 (380)
T d2gmha1 231 EPQGGFQ--SIPKLTFPGGLLIGCSPGFMNVPK-----IKGTHTAMKSGTLAAESIFNQL 283 (380)
T ss_dssp CCCCGGG--GCCCCEETTEEECTTTTCCCBTTT-----TBCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccc--cccccccCCeeEEeccccccchhh-----cCCeeeeeccHHHHHHHHHHHH
Confidence 1111110 011244689999999998643322 2456789999999999887554
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.91 E-value=0.0013 Score=58.55 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=29.2
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
.+|+|||||++|+-+|..|+ |.+|+++++.+.
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~ 36 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP 36 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 37999999999999999997 999999998764
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=96.84 E-value=0.0049 Score=55.81 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=26.9
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDK 166 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~ 166 (454)
.|+|||+|..|+-+|..++ |.+|+++++.+
T Consensus 9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~ 40 (330)
T d1neka2 9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF 40 (330)
T ss_dssp SCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 5899999999999999886 89999999754
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=3.2e-05 Score=66.27 Aligned_cols=153 Identities=18% Similarity=0.286 Sum_probs=95.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc------------------------ccccch
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL------------------------LSDITV 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~------------------------~~~~~~ 57 (454)
+|||+||||||||++||..+++. |.+|+|||++...+.|.++.+.+.. ....++
T Consensus 2 ~yDvvVIG~G~aG~~aA~~a~~~--G~kV~iiE~~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 79 (217)
T d1gesa1 2 HYDYIAIGGGSGGIASINRAAMY--GQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNW 79 (217)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTT--TCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCEEEEEeccCcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccH
Confidence 59999999999999999999998 9999999998766555443221110 000111
Q ss_pred hh-------------h-HHHHHhc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC--Cce----
Q psy1545 58 EE-------------T-DANKFEG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS--PHV---- 116 (454)
Q Consensus 58 ~~-------------~-~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~--~~~---- 116 (454)
.. . ....+.+ +|+++........... +.. ++..+.++++++|||++|..|++| +..
T Consensus 80 ~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~--~~~-~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l~~ 156 (217)
T d1gesa1 80 ETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKT--LEV-NGETITADHILIATGGRPSHPREPANDNINLEA 156 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTE--EEE-TTEEEEEEEEEECCCEEECCCEEESCTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceeee--ecC-CCceeeeeeeeeecCccccCCCCCCcCCccccc
Confidence 00 0 1112233 8888776655555443 222 677899999999999999988776 211
Q ss_pred eeeeccch-HHHHHHHh-hcCCeEEEEcCchhHHHHHHHhc--CCcE
Q psy1545 117 ITIRDTDS-VAVLQEKL-KSAKKIVVIGNGGIATELVHELS--NVDI 159 (454)
Q Consensus 117 ~~~~~~~~-~~~l~~~~-~~~~~vvVvG~G~~g~e~a~~l~--g~~V 159 (454)
..+.+.+. .....+.. ..++++.++|+|.+|+|+|..+. |.+|
T Consensus 157 ~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~ela~~~~~~G~~v 203 (217)
T d1gesa1 157 AGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRL 203 (217)
T ss_dssp HTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCHHHHHHHHHHH
T ss_pred ccEEEcCCccEeeCchhccCCCcEEEECCCccHHHHHHHHHHHHHHH
Confidence 11111110 00000000 02578999999999999998764 5554
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=96.77 E-value=0.0029 Score=46.94 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=51.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhcCcEEEcceEEEEeCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEGLCTVIVDTVAAIDPR 82 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~i~~~ 82 (454)
.+|+|||+|..|.-.|..|++. ..+++++.+.+.... . .. ++. ....+..+++.
T Consensus 33 K~VlVVG~g~Sa~dia~~l~~~--ak~v~~~~~r~~~~~---~---~~-----------------~~~-~~~~i~~~~~~ 86 (107)
T d2gv8a2 33 ESVLVVGGASSANDLVRHLTPV--AKHPIYQSLLGGGDI---Q---NE-----------------SLQ-QVPEITKFDPT 86 (107)
T ss_dssp CCEEEECSSHHHHHHHHHHTTT--SCSSEEEECTTCCSC---B---CS-----------------SEE-EECCEEEEETT
T ss_pred CeEEEECCCCCHHHHHHHHHHh--cCEEEEEEecCcccc---c---cc-----------------cce-ecCCeeEEecC
Confidence 5899999999999999999987 556666555432110 0 00 111 12345567777
Q ss_pred ccEEEeccCcEEE-ecEEEEe
Q psy1545 83 VNCVITEKQNRIK-YKTLCIC 102 (454)
Q Consensus 83 ~~~v~~~~g~~i~-~d~lviA 102 (454)
.+.+.+.+|..+. .|++|+|
T Consensus 87 ~~~v~~~dG~~~~~vD~Ii~C 107 (107)
T d2gv8a2 87 TREIYLKGGKVLSNIDRVIYC 107 (107)
T ss_dssp TTEEEETTTEEECCCSEEEEC
T ss_pred CCEEEEcCCCEEeCCCEEEEC
Confidence 7889998998776 6999886
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.43 E-value=0.0091 Score=50.33 Aligned_cols=102 Identities=21% Similarity=0.315 Sum_probs=74.2
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCccc--------ccCCCCceecCCCceEecc
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNI--------QVHGTPFELAPDCGIGVNE 298 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~--------~~~~~~l~~~~~g~i~vd~ 298 (454)
++.+++++.+... +.... ....++.++++|.+++|||.+|...+ .+...++.+ ++|+|.||+
T Consensus 107 ~~~~v~~i~G~~~--~~~~~-------~~~~~~~~i~a~~viiAtG~~p~~lp~~~~~~~~~~~~~~~~~-~~g~i~vd~ 176 (220)
T d1lvla1 107 KKHGVKVVHGWAK--VLDGK-------QVEVDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKM-NGAAIAIDE 176 (220)
T ss_dssp HHTTCEEECSCEE--EEETT-------EEEETTEEEECSEEEECCCEEECCBTEEECCSSSSGGGSCCCE-ETTEECCCT
T ss_pred ccCceEEEEeeec--ccCcc-------cccccceeEeeceeeEcCCCCcccccccccccCCcceeeehhh-cCCcccccc
Confidence 4567777766322 11111 12234578999999999999986531 111223444 378899999
Q ss_pred ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 299 LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 299 ~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
++||+.|+|||+|||+..+ .+++.|..+|+.||++|+++.
T Consensus 177 ~~~T~~~~I~A~GDv~~~~----------~l~~~a~~~g~~~a~~i~G~~ 216 (220)
T d1lvla1 177 RCQTSMHNVWAIGDVAGEP----------MLAHRAMAQGEMVAEIIAGKA 216 (220)
T ss_dssp TCBCSSTTEEECGGGGCSS----------CCHHHHHHHHHHHHHHHTTCC
T ss_pred hhhcCCCCEEEEEEeCCcc----------cchhhhhhhHHHHHHHHcCCC
Confidence 9999999999999998753 588999999999999999853
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.39 E-value=0.019 Score=43.97 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=57.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc--CcEEEcc-eEEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG--LCTVIVD-TVAAI 79 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~-~v~~i 79 (454)
.+|+|||||-+.+-.|..|++. ..+|+||.+.+.+.. .....+.+.. +|+++.. ++..+
T Consensus 35 k~V~VvGgGdsA~e~A~~L~~~--a~~V~li~r~~~~ra----------------~~~~~~~l~~~~nI~v~~~~~v~~i 96 (130)
T d1vdca2 35 KPLAVIGGGDSAMEEANFLTKY--GSKVYIIHRRDAFRA----------------SKIMQQRALSNPKIDVIWNSSVVEA 96 (130)
T ss_dssp SEEEEECCSHHHHHHHHHHTTT--SSEEEEECSSSSCCS----------------CHHHHHHHHTCTTEEEECSEEEEEE
T ss_pred CEEEEEcCchHHHHHHHHHhCC--CCcEEEEEecccccc----------------chhhhhccccCCceEEEeccEEEEE
Confidence 5899999999999999999998 789999988876431 1122333334 8888744 77777
Q ss_pred eCccc-----EEEec---cC--cEEEecEEEEe
Q psy1545 80 DPRVN-----CVITE---KQ--NRIKYKTLCIC 102 (454)
Q Consensus 80 ~~~~~-----~v~~~---~g--~~i~~d~lviA 102 (454)
..+.. .+.+. ++ +++..|.++||
T Consensus 97 ~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVa 129 (130)
T d1vdca2 97 YGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFA 129 (130)
T ss_dssp EESSSSSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred EccCCcccEEEEEEEECCCCCEEEEECCEEEEE
Confidence 54321 23332 23 47899999987
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=96.34 E-value=0.0013 Score=58.79 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=31.2
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
+|||+|||+|+.|+.+|..|+ |.+|+++++++++
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~ 36 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA 36 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 589999999999999999996 9999999988765
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=96.33 E-value=0.0013 Score=59.54 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=32.5
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS 169 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~ 169 (454)
+||+|+|||+|++|+-+|..|+ |.+|+++++.+++-
T Consensus 29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~G 66 (370)
T d2iida1 29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPG 66 (370)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSB
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 5799999999999999999997 99999999887653
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.04 E-value=0.0027 Score=45.77 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=31.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+|+|+|.|.+|+++|..|.+. |.+|+++|....
T Consensus 6 K~v~ViGlG~sG~s~a~~L~~~--g~~v~~~D~~~~ 39 (93)
T d2jfga1 6 KNVVIIGLGLTGLSCVDFFLAR--GVTPRVMDTRMT 39 (93)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCCEEEESSSS
T ss_pred CEEEEEeECHHHHHHHHHHHHC--CCEEEEeeCCcC
Confidence 5799999999999999999998 999999998654
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.98 E-value=0.0028 Score=57.05 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=33.0
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISA 170 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~ 170 (454)
.|+++|||||++|+-+|..|+ |.+|+++++++++-.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG 39 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 39 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcC
Confidence 589999999999999999997 899999999988765
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.0031 Score=57.12 Aligned_cols=37 Identities=16% Similarity=0.390 Sum_probs=32.8
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccc
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISA 170 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~ 170 (454)
+.+||+|||+|.+|+-+|..|. |.+|+++++++++-.
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GG 42 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 42 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcc
Confidence 4678999999999999999997 999999999887644
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.81 E-value=0.0047 Score=49.99 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
-+|+|||+|.+|+.|+..+.++ |..|+++|.+..
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~~ 63 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAA 63 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCST
T ss_pred cEEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccHH
Confidence 3799999999999999999999 999999998764
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.80 E-value=0.0036 Score=48.41 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=31.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++|+|+|+|..|...|..|.+. |.+|+++|+++.
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~--g~~v~vid~d~~ 34 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDKD 34 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCCcceecCChh
Confidence 3799999999999999999998 899999999754
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=95.78 E-value=0.0085 Score=50.86 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=27.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS 36 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~ 36 (454)
++|+|||+|..|+-+|..|++. +.+++++-+.
T Consensus 33 K~V~VvG~G~Sa~dia~~~~~~--~~~~~~~~~~ 64 (235)
T d1w4xa2 33 QRVGVIGTGSSGIQVSPQIAKQ--AAELFVFQRT 64 (235)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--BSEEEEEESS
T ss_pred CEEEEECCCccHHHHHHHHHhh--hccccccccc
Confidence 5799999999999999999998 6676666554
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.76 E-value=0.019 Score=48.08 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=26.6
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDK 166 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~ 166 (454)
.++|||+|+.|+++|..++ |.+|.++++..
T Consensus 5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~ 36 (221)
T d3grsa1 5 DYLVIGGGSGGLASARRAAELGARAAVVESHK 36 (221)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence 4899999999999999886 99999998743
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.70 E-value=0.0037 Score=50.88 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
..|+|||+|..|..+|..|.+. |++|+|+++...
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~--g~~V~v~dr~~~ 36 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDS--GIKVTVACRTLE 36 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTT--TCEEEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEECChH
Confidence 5799999999999999999998 899999999854
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=95.68 E-value=0.0043 Score=50.76 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.++.|||+|..|+..|..|++. |++|+++++.+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~ 34 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDA 34 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCH
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCH
Confidence 5799999999999999999998 89999999865
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.62 E-value=0.0054 Score=48.90 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
-+|+|||+|.+|+.|+..+.++ |.+|+++|.+.
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~ 65 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINV 65 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCH
T ss_pred cEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcH
Confidence 4799999999999999999999 99999999864
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=95.59 E-value=0.0043 Score=53.61 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=29.9
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCC
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDK 166 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~ 166 (454)
..++|+|||+|..|+-+|..|+ |.+|++++|+.
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4689999999999999999997 99999999854
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=95.56 E-value=0.0065 Score=48.73 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
|+|+|||+|.-|...|..|.+. |++|+++++.+.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~--G~~V~~~~r~~~ 34 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQ--GHEVQGWLRVPQ 34 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCC
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCceEEEEcCHH
Confidence 3799999999999999999998 999999998764
|
| >d1xhca3 d.87.1.1 (A:290-351) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.46 E-value=0.0073 Score=37.55 Aligned_cols=46 Identities=22% Similarity=0.453 Sum_probs=30.1
Q ss_pred eeeeeecCeEEEEeecccCCcCCCCceEEEeecCCccEEEEEEECCeEEEEEEEcCC
Q psy1545 363 THMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIKLVMKDGRMQGAVLIGET 419 (454)
Q Consensus 363 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~G~~~~g~~ 419 (454)
+..-|+.+.+++.+|.+...++ ++ +.-.|+++++++|+|+.++++-
T Consensus 10 Ss~FKfgd~~iAiiG~~~g~G~-----Wi------d~~tK~Fy~d~KiiGaVV~~Di 55 (62)
T d1xhca3 10 STVFKFGKLQIAIIGNTKGEGK-----WI------EDNTKVFYENGKIIGAVVFNDI 55 (62)
T ss_dssp EEEEEETTEEEEEEECCSSCEE-----EE------ETTEEEEC-----CEEEEESCH
T ss_pred eeeeeeCCccEEEEEeccCcce-----ee------cccceeeeeCCcEEEEEEehhh
Confidence 3445788999999999876542 22 1246888899999999999974
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.26 E-value=0.039 Score=46.64 Aligned_cols=107 Identities=20% Similarity=0.272 Sum_probs=81.0
Q ss_pred ccCCceEEEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEEEeeccCcCcc---------cccCCCCceecC-CCc
Q psy1545 226 SRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPNSN---------IQVHGTPFELAP-DCG 293 (454)
Q Consensus 226 l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi~a~G~~p~~~---------~~~~~~~l~~~~-~g~ 293 (454)
+++.+|+++.+... +.... ...+...++ ..+.++.+++++|.+|... ..+...+++++. .|+
T Consensus 111 l~~~~V~vi~G~~~--~~~~~----~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~i~~~~~~~~~l~~~gv~l~~~~g~ 184 (235)
T d1h6va1 111 LREKKVVYENAYGK--FIGPH----KIMATNNKGKEKVYSAERFLIATGERPRYLGIRDSCTRTIGLETVGVKINEKTGK 184 (235)
T ss_dssp HHHHTCEEECCEEE--EEETT----EEEEECTTSCEEEEEEEEEEECCCEEECCCSSEEESCTTSCCTTTTCCCCSSSCC
T ss_pred hhccCceEEEeEEe--ecccc----ceecccccccccccccccceeecCCCceeEEEeeccceeeccccceeeeccccCc
Confidence 45678998877533 22222 344555555 4588999999999999642 123455678775 589
Q ss_pred eEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 294 IGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 294 i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
|.||++||||+|+|||+|||+..+ +++++.|+.+|++||++|++.
T Consensus 185 I~vd~~~~TsvpgIyA~GDv~~g~---------~~l~~~A~~eG~~aa~~~~g~ 229 (235)
T d1h6va1 185 IPVTDEEQTNVPYIYAIGDILEGK---------LELTPVAIQAGRLLAQRLYGG 229 (235)
T ss_dssp BCCCTTSBCSSTTEEECGGGBTTS---------CCCHHHHHHHHHHHHHHHHHC
T ss_pred cccCCccccCCCCEEEEEeccCCC---------cccHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999998654 467889999999999999974
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.22 E-value=0.0058 Score=53.96 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=30.0
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS 169 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~ 169 (454)
+|+|||+|+.|+.+|..|+ |.+|+++++++++-
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G 36 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG 36 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence 6999999999999999997 99999999987653
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.16 E-value=0.0089 Score=47.19 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=28.3
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEe
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVK 164 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~ 164 (454)
++|+++|||||.+|.+-|..|. |++||++..
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 3899999999999999999886 999999964
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.13 E-value=0.0065 Score=52.55 Aligned_cols=33 Identities=24% Similarity=0.512 Sum_probs=29.1
Q ss_pred eEEEEcCchhHHHHHHHhc--CC-cEEEEEeCCCcc
Q psy1545 137 KIVVIGNGGIATELVHELS--NV-DIVWVVKDKHIS 169 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~-~V~~i~~~~~~~ 169 (454)
+|+|||||+.|+-+|..|. |. +|+++++++++-
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~G 37 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIG 37 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSB
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCC
Confidence 6999999999999999996 85 799999987653
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.95 E-value=0.0069 Score=47.88 Aligned_cols=32 Identities=34% Similarity=0.523 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS 36 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~ 36 (454)
.+++|||||..|+.-|..|.+. |.+|+||.++
T Consensus 14 krvLViGgG~va~~ka~~Ll~~--GA~VtVvap~ 45 (150)
T d1kyqa1 14 KRILLIGGGEVGLTRLYKLMPT--GCKLTLVSPD 45 (150)
T ss_dssp CEEEEEEESHHHHHHHHHHGGG--TCEEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCC
Confidence 5799999999999999999999 9999999764
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=94.92 E-value=0.014 Score=45.68 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
+++|.|||+|..|.++|+.|+..+-..+++|+|..+
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~ 40 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK 40 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence 468999999999999999999984345899999764
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.81 E-value=0.011 Score=52.58 Aligned_cols=34 Identities=24% Similarity=0.464 Sum_probs=31.0
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccc
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISA 170 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~ 170 (454)
.++|||||++|+-+|..|+ |.+|+++++++++-.
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG 38 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG 38 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSG
T ss_pred cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCccc
Confidence 6899999999999999997 999999999887755
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=94.74 E-value=0.032 Score=41.43 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=27.7
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEe
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVK 164 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~ 164 (454)
.+++++|||+|.+|..-|..|. |++|+++..
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~ 43 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNAL 43 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3899999999999999999886 999999853
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=94.64 E-value=0.011 Score=45.64 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+++|||.|..|..+|..|.+. |.+|+++|+++.
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~--g~~vvvid~d~~ 34 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRM--GHEVLAVDINEE 34 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHT--TCCCEEEESCHH
T ss_pred EEEEECCCHHHHHHHHHHHHC--CCeEEEecCcHH
Confidence 689999999999999999998 999999999754
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=94.48 E-value=0.019 Score=42.70 Aligned_cols=33 Identities=21% Similarity=0.156 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+|+|||||..|..-|..|.+. |.+|+++++..
T Consensus 13 k~vlVvG~G~va~~ka~~ll~~--ga~v~v~~~~~ 45 (113)
T d1pjqa1 13 RDCLIVGGGDVAERKARLLLEA--GARLTVNALTF 45 (113)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TBEEEEEESSC
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEeccC
Confidence 5799999999999999999998 89999997754
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=94.37 E-value=0.015 Score=47.87 Aligned_cols=34 Identities=12% Similarity=0.056 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+|+|||+|.-|.+.|..|++. +++|+++.+++.
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~--g~~V~l~~r~~~ 41 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKK--CREVCVWHMNEE 41 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTT--EEEEEEECSCHH
T ss_pred ceEEEECCCHHHHHHHHHHHHc--CCeEEEEEecHH
Confidence 5799999999999999999997 889999988643
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.32 E-value=0.019 Score=47.25 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+|.|||+|.-|...|..++.. |++|+++|+++.
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~~ 38 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAAT--GHTVVLVDQTED 38 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHH
T ss_pred EEEEEECcCHHHHHHHHHHHhC--CCcEEEEECChH
Confidence 5799999999999999999998 999999999864
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.93 E-value=0.027 Score=45.81 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=29.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS 36 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~ 36 (454)
|+|.|||+|.-|.+.|..|++. +.+|+++.+.
T Consensus 1 MkI~ViGaG~~GtalA~~la~~--g~~V~l~~r~ 32 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDN--GNEVRIWGTE 32 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH--CCEEEEECCG
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEEec
Confidence 4799999999999999999998 8999999774
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.89 E-value=0.027 Score=47.79 Aligned_cols=51 Identities=16% Similarity=0.030 Sum_probs=37.6
Q ss_pred CccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 225 SSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 225 ~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
.+++.|++|++|+.|++|..+++ +..+...+.+|++++||.||....+-|+
T Consensus 245 ~~~~~G~~i~~~~~V~~I~~~~~-~~~v~~v~~~g~~~~ad~VI~~~s~~~~ 295 (297)
T d2bcgg1 245 LSAIYGGTYMLDTPIDEVLYKKD-TGKFEGVKTKLGTFKAPLVIADPTYFPE 295 (297)
T ss_dssp HHHHTTCEEECSCCCCEEEEETT-TTEEEEEEETTEEEECSCEEECGGGCGG
T ss_pred HHHhcCCEEEeCCEeeEEEEECC-CCEEEEEEcCCEEEECCEEEEChhhccC
Confidence 33568999999999999976543 2244445678899999999986555553
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.85 E-value=0.024 Score=47.06 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+|.|||.|..|+..|..|++. |++|+.+|.+..
T Consensus 2 kI~ViGlG~vGl~~a~~la~~--g~~V~g~D~n~~ 34 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSST 34 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHH
T ss_pred EEEEECCCHhHHHHHHHHHhC--CCcEEEEeCCHH
Confidence 699999999999999999998 899999998754
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.70 E-value=0.027 Score=47.11 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=28.9
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
.++|||+|+.|+++|..++ |.+|+++++++.+
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~ 38 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL 38 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 5899999999999999887 9999999987664
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.58 E-value=0.025 Score=50.84 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=29.3
Q ss_pred EEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc
Q psy1545 138 IVVIGNGGIATELVHELS--NVDIVWVVKDKHIS 169 (454)
Q Consensus 138 vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~ 169 (454)
|+|||+|..|+-+|..|+ |.+|+++++++++-
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~G 35 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVG 35 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSB
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCc
Confidence 799999999999999997 99999999988664
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.13 E-value=0.036 Score=44.53 Aligned_cols=32 Identities=13% Similarity=0.364 Sum_probs=29.1
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDK 166 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~ 166 (454)
.|+++|+|+|.+|.-+|..|. |.+|+++.|..
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence 589999999999999999997 89999998854
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=93.05 E-value=0.06 Score=41.69 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++|.|||+|..|.+.|..|...+...+++|+|..+.
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~ 36 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG 36 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence 369999999999999999998743458999997653
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=92.92 E-value=0.035 Score=45.32 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+|.|||+|.-|...|..++.. |++|+++|+++.
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~~ 38 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASK--GTPILMKDINEH 38 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHT--TCCEEEECSSHH
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCeEEEEECCHH
Confidence 3699999999999999999998 999999999753
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=92.90 E-value=0.036 Score=47.59 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=29.9
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS 169 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~ 169 (454)
..|+|||+|+.|+-+|..++ |.+|+++++.+.+-
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G 40 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIG 40 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 46999999999999999886 99999999987553
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=92.90 E-value=0.035 Score=48.11 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=27.7
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDK 166 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~ 166 (454)
.|+|||||.+|+-+|..|+ |.+|+++++++
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 5999999999999999997 99999999864
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=92.79 E-value=0.057 Score=42.94 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
+|.|||.|.-|.+.|..|++. |++|+++|+++
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~ 33 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQ 33 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCH
T ss_pred EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCc
Confidence 699999999999999999998 89999998864
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=92.48 E-value=0.053 Score=47.25 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=29.8
Q ss_pred CCeEEEEcCchhHHHHHHHhc---CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS---NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~---g~~V~~i~~~~~~ 168 (454)
...|+|||+|+.|+.+|..|+ |.+|+++++.+.+
T Consensus 33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~ 69 (278)
T d1rp0a1 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP 69 (278)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCC
Confidence 467999999999999998873 8999999988754
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=92.43 E-value=0.052 Score=45.71 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=28.5
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
.++|||+|+.|+.+|..++ |.+|+++++.+.+
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~ 41 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL 41 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 5899999999999999886 9999999987654
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=92.42 E-value=0.058 Score=38.30 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=29.0
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCC
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDK 166 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~ 166 (454)
++|+++|+|.|.+|..+|..|. |.+|++.+.+.
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~ 38 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM 38 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence 4789999999999999999886 99999987643
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.42 E-value=0.078 Score=42.27 Aligned_cols=36 Identities=25% Similarity=0.145 Sum_probs=31.0
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
|+ +|.|||.|.-|.+.|+.|++.++..+|..+|+++
T Consensus 1 Mk-~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~ 36 (171)
T d2g5ca2 1 MQ-NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (171)
T ss_dssp CC-EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CC-EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 64 6999999999999999999985566888888864
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=92.42 E-value=0.077 Score=41.69 Aligned_cols=35 Identities=17% Similarity=0.061 Sum_probs=29.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
+.+|+|||+|..|.++|+.|...+ -.+++|+|..+
T Consensus 7 ~~KI~IIGaG~VG~~lA~~l~~~~-~~el~L~D~~~ 41 (154)
T d1pzga1 7 RKKVAMIGSGMIGGTMGYLCALRE-LADVVLYDVVK 41 (154)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHT-CCEEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC-CceEEEEEecc
Confidence 478999999999999999888872 23899998765
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=92.20 E-value=0.044 Score=44.31 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=28.0
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDK 166 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~ 166 (454)
|++.|||+|..|.-+|..|. |.+|+++.|++
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 78999999999999999997 99999998743
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=92.17 E-value=0.084 Score=41.01 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=29.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+|.|||+|..|.++|+.|...+--.+++|+|..+
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 36 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE 36 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 47999999999999999999873334899998754
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.15 E-value=0.063 Score=45.02 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=28.6
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
.++|||+|+.|+.+|..++ |.+|.++++++.+
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~ 40 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL 40 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 6899999999999999886 9999999987654
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=92.15 E-value=0.096 Score=41.31 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
+.+|.|||+|..|.++|+.|...+---++.|+|..+
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~ 55 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLE 55 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 468999999999999999999984334899999864
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.09 E-value=0.078 Score=41.32 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+|.|||+|..|.++|+.|...+..-+++|+|..+
T Consensus 7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~ 41 (148)
T d1ldna1 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE 41 (148)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence 57999999999999999999984445899999764
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=92.05 E-value=0.093 Score=46.99 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=29.4
Q ss_pred CeEEEEcCchhHHHHHHHhc-------CCcEEEEEeCCCcc
Q psy1545 136 KKIVVIGNGGIATELVHELS-------NVDIVWVVKDKHIS 169 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~-------g~~V~~i~~~~~~~ 169 (454)
-.|+|||||++|+-+|..|+ |.+|+++++.+.+.
T Consensus 8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~ 48 (360)
T d1pn0a1 8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV 48 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence 36999999999999999882 89999999987654
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=92.04 E-value=0.1 Score=40.36 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=29.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+|.|||+|..|.++|+.|...+-.-++.|+|..+.
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~ 37 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE 37 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence 479999999999999999998743448999997653
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.00 E-value=0.091 Score=40.49 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=29.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++|.|||+|..|.++|+.|...+-..++.|+|..+
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~ 35 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK 35 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence 37999999999999999998874445899998654
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=91.98 E-value=0.048 Score=48.06 Aligned_cols=30 Identities=33% Similarity=0.505 Sum_probs=26.8
Q ss_pred eEEEEcCchhHHHHHHHhc--C-CcEEEEEeCC
Q psy1545 137 KIVVIGNGGIATELVHELS--N-VDIVWVVKDK 166 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g-~~V~~i~~~~ 166 (454)
+|+|||+|.+|+-+|..|+ | .+|+++++++
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 6999999999999999986 7 5799999874
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.82 E-value=0.097 Score=40.42 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=29.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++|.|||+|..|.++|+.|...+---+++|+|..+
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE 35 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence 37999999999999999999873334799998754
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.80 E-value=0.063 Score=44.67 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=27.4
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDK 166 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~ 166 (454)
..++|||+|+.|+++|..++ |.+|+++++..
T Consensus 4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~ 36 (223)
T d1ebda1 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36 (223)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence 36899999999999998886 99999999754
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.79 E-value=0.11 Score=40.95 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=29.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+|.|||+|..|.++|+.|...+-.-+++|+|..+
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~ 54 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLKGLADELALVDADT 54 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 47999999999999999999884445899998764
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=91.48 E-value=0.075 Score=42.05 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=28.2
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
||+|+|+|.+|.-+|..|+ |.+|+++.|++.
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 7999999999999999986 999999998664
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=91.40 E-value=0.1 Score=41.62 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+|+|+|+|-++-++++.|.+. +.+|+|+.|..
T Consensus 19 k~vlIlGaGGaarai~~al~~~--g~~i~I~nRt~ 51 (170)
T d1nyta1 19 LRILLIGAGGASRGVLLPLLSL--DCAVTITNRTV 51 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSH
T ss_pred CEEEEECCcHHHHHHHHHhccc--ceEEEeccchH
Confidence 5799999999999999999998 77899998764
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.35 E-value=0.073 Score=43.23 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=29.1
Q ss_pred cEEEE-CCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 4 TYLII-GGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 4 dvvII-GgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
+|.|| |+|.-|.+.|..|++. |++|++.+|++
T Consensus 2 ki~vigGaG~iG~alA~~la~~--G~~V~l~~R~~ 34 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATL--GHEIVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTT--TCEEEEEESSH
T ss_pred EEEEEeCCcHHHHHHHHHHHHC--CCEEEEEECCH
Confidence 58999 5699999999999998 99999999875
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=91.30 E-value=0.12 Score=39.84 Aligned_cols=35 Identities=20% Similarity=0.124 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+|.|||+|..|.++|+.|...+-.-+++|+|..+
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~ 36 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 36 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 47999999999999999999874445899998654
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=91.29 E-value=0.065 Score=46.49 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=28.0
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
.++|||||.+|+-+|..|+ |.+|+++++.+.
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~ 37 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP 37 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 4899999999999999997 999999998653
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=91.23 E-value=0.15 Score=34.57 Aligned_cols=35 Identities=17% Similarity=0.064 Sum_probs=32.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
+.|-|||||.-|.-.+....++ |.++.++++.+..
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~L--G~~v~vldp~~~~ 36 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPL--GIAVWPVGLDAEP 36 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGG--TEEEEEECTTSCG
T ss_pred CEEEEEcCCHHHHHHHHHHHHc--CCEEEEEcCCCCC
Confidence 4699999999999999999999 9999999997654
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.07 E-value=0.069 Score=43.72 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=28.8
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
-+++.|||+|.+|..+|..++ |.+|+++++++.
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED 38 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 479999999999999998876 999999987554
|
| >d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Rab escort protein 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.06 E-value=0.12 Score=48.45 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=37.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK 44 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~ 44 (454)
.+||||+|-|..=.-.|..|.+. |.+|+-+|++++.++.+.
T Consensus 6 e~DVII~GTGL~ESILAaAlSr~--GkkVLHiD~N~yYGg~~a 46 (491)
T d1vg0a1 6 DFDVIVIGTGLPESIIAAACSRS--GQRVLHVDSRSYYGGNWA 46 (491)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCGGGC
T ss_pred ccCEEEECCChHHHHHHHHHHhc--CCEEEEecCCCcCCCccc
Confidence 48999999999999999999998 999999999999876544
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=90.70 E-value=0.15 Score=39.38 Aligned_cols=35 Identities=26% Similarity=0.147 Sum_probs=29.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+|.|||+|..|.++|+.|...+ -.++.++|..+.
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~-l~dl~l~D~~~~ 36 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKE-LGDIVLLDIVEG 36 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCC-cceEEEEeeccc
Confidence 47999999999999999998872 248999987653
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.64 E-value=0.12 Score=39.92 Aligned_cols=34 Identities=24% Similarity=0.132 Sum_probs=28.4
Q ss_pred cEEEECC-CHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 4 TYLIIGG-GIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 4 dvvIIGg-G~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
+|.|||+ |..|.++|+.|...+--.++.|+|..+
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~ 36 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH 36 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence 6999996 999999999999873234899998764
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=90.59 E-value=0.19 Score=37.15 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=31.0
Q ss_pred ccEEEECCC-----------HHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 3 FTYLIIGGG-----------IAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG-----------~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
.+|+|||+| .++..|+..|++. |.+++++..+|.-
T Consensus 5 kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~--g~~~IliN~NPeT 50 (121)
T d1a9xa4 5 EKIMVLGGGPNRIGQGIEFDYCCVHASLALRED--GYETIMVNCNPET 50 (121)
T ss_dssp CEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHT--TCEEEEECCCTTS
T ss_pred CEEEEECCCcCcccccchhhHHHHHHHHHHHhc--CCeEEEEecChhh
Confidence 579999999 5799999999998 9999999998753
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=90.52 E-value=0.13 Score=40.05 Aligned_cols=32 Identities=13% Similarity=0.347 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++||+|.|..|...+..|.+. +.++++||..+
T Consensus 5 HiII~G~g~~g~~l~~~L~~~--~~~v~vId~d~ 36 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQR--GQNVTVISNLP 36 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHT--TCCEEEEECCC
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCCEEEEeccc
Confidence 599999999999999999998 88999998875
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.31 E-value=0.13 Score=41.94 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=28.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
|+|.|||.|..|+..|..++ . |++|+.+|.++.
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~--g~~V~g~Din~~ 33 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-L--QNEVTIVDILPS 33 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-T--TSEEEEECSCHH
T ss_pred CEEEEECCChhHHHHHHHHH-C--CCcEEEEECCHH
Confidence 36999999999999998776 4 889999998864
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=90.30 E-value=0.069 Score=43.46 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=28.8
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
+-+++.|||+|.+|..+|..++ |.+|+++++++.
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH 38 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 3578999999999999997765 999999987543
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=90.28 E-value=0.17 Score=39.34 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=30.8
Q ss_pred ccEEEEC-CCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIG-GGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIG-gG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+|.||| .|.-|.+.|..|++. |++|+++|+...
T Consensus 10 ~kI~iIGg~G~mG~~la~~L~~~--G~~V~~~d~~~~ 44 (152)
T d2pv7a2 10 HKIVIVGGYGKLGGLFARYLRAS--GYPISILDREDW 44 (152)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTT--TCCEEEECTTCG
T ss_pred CeEEEEcCCCHHHHHHHHHHHHc--CCCcEecccccc
Confidence 5799999 699999999999998 999999998754
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=89.70 E-value=0.13 Score=42.64 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=27.4
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
.++|||+|+.|+.+|..++ |.+|.++++...
T Consensus 5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~~ 37 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKG 37 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEEECCBC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 4899999999999999886 999999997543
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.51 E-value=0.21 Score=36.61 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=32.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
.+|-|||||.-|.-.|..++++ |.++.++|+++..
T Consensus 12 ~kigIlGgGQL~rMla~aA~~l--G~~v~v~d~~~~~ 46 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRL--GVEVIAVDRYADA 46 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTT--TCEEEEEESSTTC
T ss_pred CEEEEEeCCHHHHHHHHHHHHC--CCEEEEEcCCCCC
Confidence 5799999999999999999999 9999999998654
|
| >d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=89.43 E-value=0.24 Score=38.03 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=31.8
Q ss_pred cCccCCceEEEeCce--EEEEEcCCCCccceEEEecCCcEEecCEEEEe
Q psy1545 224 GSSRDTKITIEYSCE--VERIVDSEDDTCNAYVKLTNGHTHACDIVVSA 270 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~--v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a 270 (454)
+.++++||+++.+.. +.++.... ..+++.+|+++++|++.+.
T Consensus 96 ~~~~~~~I~~~~~~~~~~v~vd~~~-----~~~~~~~Ge~v~yD~l~vv 139 (141)
T d1fcda2 96 FGTENAMIEWHPGPDSAVVKVDGGE-----MMVETAFGDEFKADVINLI 139 (141)
T ss_dssp STTSSCSEEEECSSTTCEEEEEETT-----TEEEETTCCEEECSEEEEC
T ss_pred HHHHhcCceeeecCCceEEeecCCc-----EEEEeCCCcEEeeeEEEeC
Confidence 344668999998864 66666544 3578899999999998864
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.42 E-value=0.17 Score=40.12 Aligned_cols=34 Identities=18% Similarity=0.029 Sum_probs=29.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
..|+|+|+|+.|+.++..++.. |.+|++++.++.
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~ 62 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSR 62 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSST
T ss_pred CEEEEECCCCcchhHHHHhhhc--cccccccccchh
Confidence 3589999999999999888877 889999988754
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=89.39 E-value=0.13 Score=45.26 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=35.1
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEec--CC--cEEecCEEEEeecc
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT--NG--HTHACDIVVSAIGV 273 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~--~g--~~~~~D~vi~a~G~ 273 (454)
+...+.|+++++++.++++..+++ +....|... ++ .++.++.||+|||-
T Consensus 153 ~~a~~~gv~i~~~~~v~~li~~~~-G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG 205 (308)
T d1y0pa2 153 DNAVKRNIDLRMNTRGIEVLKDDK-GTVKGILVKGMYKGYYWVKADAVILATGG 205 (308)
T ss_dssp HHHHHTTCEEESSEEEEEEEECTT-SCEEEEEEEETTTEEEEEECSEEEECCCC
T ss_pred HHHHhccceEEEeeccchhhhhcc-cccccccccccccceeEeecCeEEEccCc
Confidence 334668999999999999876543 334455543 33 46889999999983
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=89.34 E-value=0.2 Score=37.39 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=31.1
Q ss_pred ccEEEECCCH-----------HHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 3 FTYLIIGGGI-----------AGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~-----------aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
.+|+|||+|| ++..|+..|++. |.+++++..++.-
T Consensus 8 kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~--g~~~iliN~NP~T 53 (127)
T d1a9xa3 8 KSILILGAGPIVIGQACEFDYSGAQACKALREE--GYRVINVNSNPAT 53 (127)
T ss_dssp CEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHH--TCEEEEECSCTTC
T ss_pred CEEEEECCCcCcccccchhHHHHHHHHHHHHHc--CCeEEEecCchHh
Confidence 5799999986 799999999999 9999999998753
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.32 E-value=0.18 Score=41.37 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=30.7
Q ss_pred CcccEEEECC-CHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGG-GIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGg-G~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
-+.+|+|+|| |..|..++.+|.+. |++|+++.|++.
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~--g~~V~~~~R~~~ 38 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQA--GYEVTVLVRDSS 38 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCGG
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--cCEEEEEEcChh
Confidence 0457999996 99999999999998 899999988643
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=89.28 E-value=0.24 Score=38.22 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=27.6
Q ss_pred ccEEEEC-CCHHHHHHHHHHhhc-CCCCeEEEECCCC
Q psy1545 3 FTYLIIG-GGIAGVSCVEGLAFL-HPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIG-gG~aGl~aA~~l~~~-~~g~~v~lie~~~ 37 (454)
++|.||| +|..|.++|+.|... ....++.|+|..+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~ 37 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP 37 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence 3799999 599999999988643 3356899998654
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=89.24 E-value=0.15 Score=40.45 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.|+|+|+|+.|+.++..++.. |.+|+++|+++.
T Consensus 29 ~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~ 61 (170)
T d1e3ja2 29 TVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPR 61 (170)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHH
T ss_pred EEEEEcccccchhhHhhHhhh--cccccccchHHH
Confidence 589999999999999888877 889999998753
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.05 E-value=0.18 Score=38.86 Aligned_cols=34 Identities=15% Similarity=0.015 Sum_probs=28.0
Q ss_pred cEEEECC-CHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 4 TYLIIGG-GIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 4 dvvIIGg-G~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
+|+|||| |..|.++|+.|...+---+++|+|.++
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~ 36 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH 36 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence 6999996 999999999999873334799998753
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.97 E-value=0.16 Score=40.36 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~~ 38 (454)
.|+|+|+|+.|+.++..++.. |. +|+++|+++.
T Consensus 29 ~VlI~G~G~iG~~~~~~a~~~--G~~~Vi~~d~~~~ 62 (171)
T d1pl8a2 29 KVLVCGAGPIGMVTLLVAKAM--GAAQVVVTDLSAT 62 (171)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHH
T ss_pred EEEEECCCccHHHHHHHHHHc--CCceEEeccCCHH
Confidence 589999999999999999887 66 7999988753
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=88.69 E-value=0.2 Score=39.76 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=28.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~ 37 (454)
.+|+|+|+|-++-++++.|.+. +. +|+|+.|+.
T Consensus 18 ~~vlIlGaGGaarai~~aL~~~--g~~~I~I~nR~~ 51 (167)
T d1npya1 18 AKVIVHGSGGMAKAVVAAFKNS--GFEKLKIYARNV 51 (167)
T ss_dssp SCEEEECSSTTHHHHHHHHHHT--TCCCEEEECSCH
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCCEEEEecccH
Confidence 4799999999999999999998 64 789987754
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=88.66 E-value=0.22 Score=44.82 Aligned_cols=32 Identities=25% Similarity=0.188 Sum_probs=28.7
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
.|+|||+|+.|+-+|..|+ |.+|.+++++.++
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~ 37 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLW 37 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCCC
Confidence 5899999999999999997 9999999997543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.55 E-value=0.18 Score=39.79 Aligned_cols=34 Identities=18% Similarity=0.071 Sum_probs=29.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
..|+|+|+|+.|+.++..++.. |.+|+.+++++.
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~ 62 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDA 62 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHH
T ss_pred CEEEEeeccccHHHHHHHHHHc--CCccceecchhh
Confidence 3689999999999999888877 789999988753
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=88.50 E-value=0.3 Score=37.90 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=28.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
+.+|.|||+|..|.++|+.|.... =.+++|+|..+
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~-l~el~L~Di~~ 37 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKN-LGDVVLFDIVK 37 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT-CCEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC-CCeEEEEeccC
Confidence 358999999999999998887763 23899999755
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=88.28 E-value=0.14 Score=38.88 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=27.1
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKD 165 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~ 165 (454)
|+++|+|.|..|..+|..|. |.+|++++.+
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d 32 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 32 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCc
Confidence 67999999999999999996 9999999764
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.08 E-value=0.16 Score=44.87 Aligned_cols=35 Identities=6% Similarity=0.246 Sum_probs=30.4
Q ss_pred CCeEEEEcCchhHHHHHHHhc----CCcEEEEEeCCCcc
Q psy1545 135 AKKIVVIGNGGIATELVHELS----NVDIVWVVKDKHIS 169 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~~~~ 169 (454)
...++|||+|+.|+.+|..|+ |.+|+++++.+.+-
T Consensus 50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~ 88 (311)
T d2gjca1 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG 88 (311)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCc
Confidence 467999999999999999884 88999999877653
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=87.93 E-value=0.17 Score=45.65 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=27.9
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
.++|||+|..|+-+|..|+ |.+|.+++++..
T Consensus 9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~ 41 (370)
T d3coxa1 9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 41 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999886 999999998743
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=87.89 E-value=0.18 Score=44.55 Aligned_cols=115 Identities=21% Similarity=0.163 Sum_probs=66.6
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEec--CC--cEEecCEEEEeeccCc-Ccc----------ccc-------
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT--NG--HTHACDIVVSAIGVVP-NSN----------IQV------- 281 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~--~g--~~~~~D~vi~a~G~~p-~~~----------~~~------- 281 (454)
+...++|+++++++.++++..+++ ++...+... ++ ..+.++.||+|||--. |.+ .+.
T Consensus 160 ~~a~~~gv~i~~~t~v~~li~d~~-G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~ 238 (322)
T d1d4ca2 160 DNAVKRGTDIRLNSRVVRILEDAS-GKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGA 238 (322)
T ss_dssp HHHHHTTCEEETTEEEEEEECCSS-SCCCEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBCSCTTC
T ss_pred HHHHhcCceEEEeeeccccccccc-ccccceEEEeecccEEEEeCCeEEEcCCCcccCHHHHHhhCcccccccccCCCCc
Confidence 344568999999999999877543 344445443 33 3589999999998322 110 000
Q ss_pred ------------------CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHH----HHHHHH
Q psy1545 282 ------------------HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQA----KHMGTY 339 (454)
Q Consensus 282 ------------------~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A----~~~g~~ 339 (454)
+..++.++..+.+ +++..+|.+|++||+|+|+.. ....+ +++.++ .-.|+.
T Consensus 239 tGdg~~~a~~aGa~~~~~e~~~~~~~~~~~~-~~~~~~~~v~Glya~Ge~~~g-vhG~n-----rlg~~~~~e~~v~g~~ 311 (322)
T d1d4ca2 239 TGDGLDVALQAGAATRDLEMGGLVIDTKAEV-KSEKTGKPITGLYAAGEVTGG-VHGAN-----RLGGNAISDIVTYGRI 311 (322)
T ss_dssp SSHHHHHHHHTTBCEECTTCCEECCCTTCEE-EBTTTSSEEEEEEECGGGBCS-SSTTS-----CCTTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHcCCcceecccceEEecCceEE-EECCCCCEeCceEEchhhcCC-ccccc-----cchhhHHHHHHHHHHH
Confidence 0001122222222 234455789999999999863 33222 343333 444777
Q ss_pred HHhhhcC
Q psy1545 340 AAKCMVG 346 (454)
Q Consensus 340 aa~~i~~ 346 (454)
|+.+++.
T Consensus 312 ag~~aa~ 318 (322)
T d1d4ca2 312 AGASAAK 318 (322)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777653
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=87.12 E-value=0.23 Score=37.48 Aligned_cols=29 Identities=34% Similarity=0.484 Sum_probs=26.3
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKD 165 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~ 165 (454)
+|+|+|+|..|..+|..|. |.+|++++++
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d 32 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDID 32 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcceecCC
Confidence 7899999999999999986 8999999764
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=87.08 E-value=0.2 Score=44.98 Aligned_cols=115 Identities=14% Similarity=0.131 Sum_probs=65.4
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEec---CCc--EEecCEEEEeeccCcCccccc--------------------
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLT---NGH--THACDIVVSAIGVVPNSNIQV-------------------- 281 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g~--~~~~D~vi~a~G~~p~~~~~~-------------------- 281 (454)
.+.|+++++++.|.+|..+.+..+...|++. +|+ ++.++.||+|.|..-... ++
T Consensus 229 ~~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~-lL~~Sg~~~~~~~~~~~~~~~~ 307 (379)
T d2f5va1 229 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQ-LLVNSGFGQLGRPNPTNPPELL 307 (379)
T ss_dssp EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHH-HHHHTTSSCCSSCCTTSCCSSS
T ss_pred cCCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHH-HHhhcccccccccccccCcccc
Confidence 4457999999999999865432334455543 343 578899999988743222 11
Q ss_pred CCCCc-ee--cCC-CceEecccccc-ccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 282 HGTPF-EL--APD-CGIGVNELMQT-SISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 282 ~~~~l-~~--~~~-g~i~vd~~~~t-~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
...+. .+ +.. ..=+||+.+++ .++|+|++|-..-......+ -......-|..+|++|....
T Consensus 308 ~~~g~h~mG~~~~~~~~vvd~~~~v~g~~nlyv~d~sv~p~~~~~n------Pt~t~~alA~r~a~~i~~~~ 373 (379)
T d2f5va1 308 PSLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGAN------PTLTAMSLAIKSCEYIKQNF 373 (379)
T ss_dssp TTTTBTCBCSCTTTTTCSBCTTCBBTTCSSEEECSGGGCCSCCCSC------SHHHHHHHHHHHHHHHHHHC
T ss_pred cccceeecccCCCCCCccCCCCCcccccCCEEEeCCcccCCccccC------cHHHHHHHHHHHHHHHHHhh
Confidence 11110 00 111 11367888885 68999987754432111111 12235555677888887654
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=86.94 E-value=0.24 Score=43.69 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=27.9
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
.|+|||+|..|+-+|..++ |.+|.++++.+.
T Consensus 21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~ 53 (317)
T d1qo8a2 21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPF 53 (317)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 4999999999999999886 999999998664
|
| >d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=86.89 E-value=0.74 Score=35.07 Aligned_cols=35 Identities=14% Similarity=0.057 Sum_probs=30.0
Q ss_pred CcEEEcc---eEEEEeCcccEEEeccCcEEEecEEEEe
Q psy1545 68 LCTVIVD---TVAAIDPRVNCVITEKQNRIKYKTLCIC 102 (454)
Q Consensus 68 ~i~~~~~---~v~~i~~~~~~v~~~~g~~i~~d~lviA 102 (454)
+|+++.+ .+..+|...+.+.+.+|+++.||.|.+-
T Consensus 102 ~I~~~~~~~~~~v~vd~~~~~~~~~~Ge~v~yD~l~vv 139 (141)
T d1fcda2 102 MIEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINLI 139 (141)
T ss_dssp SEEEECSSTTCEEEEEETTTEEEETTCCEEECSEEEEC
T ss_pred CceeeecCCceEEeecCCcEEEEeCCCcEEeeeEEEeC
Confidence 8888743 6889999999999999999999998763
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=86.58 E-value=0.25 Score=39.66 Aligned_cols=33 Identities=27% Similarity=0.234 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~~ 38 (454)
.|+|+|+|+.|+.++..++.. |. +|+++++++.
T Consensus 31 ~VlV~GaG~iG~~~~~~ak~~--Ga~~Vi~~~~~~~ 64 (182)
T d1vj0a2 31 TVVIQGAGPLGLFGVVIARSL--GAENVIVIAGSPN 64 (182)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TBSEEEEEESCHH
T ss_pred EEEEECCCccchhheeccccc--ccccccccccccc
Confidence 589999999999999999887 75 7999988754
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=86.58 E-value=0.15 Score=41.52 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=26.6
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKD 165 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~ 165 (454)
++++|+|+|..|.-+|..|+ |.+|+++.|+
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~ 39 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMN 39 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence 57999999999999999987 7899998764
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=86.57 E-value=0.22 Score=44.18 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=26.9
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDK 166 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~ 166 (454)
.|+|||+|+.|+-+|..++ |.+|.++++.+
T Consensus 7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~ 38 (336)
T d2bs2a2 7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP 38 (336)
T ss_dssp SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 4999999999999999886 99999999754
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=86.57 E-value=0.36 Score=37.98 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=28.1
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeC
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKD 165 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~ 165 (454)
+|.+++|+|+|..|...+.... |++|++++.+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~ 64 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN 64 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence 3789999999999999998775 9999998754
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=86.38 E-value=0.35 Score=38.63 Aligned_cols=33 Identities=9% Similarity=0.137 Sum_probs=28.3
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCC
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDK 166 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~ 166 (454)
+|.+++|+|+|..|...+.... |++|++++.+.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~ 62 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA 62 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence 3789999999999999988775 99999987543
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.23 E-value=0.26 Score=41.25 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=24.6
Q ss_pred CeEEEEcCchhHHHHHHHhc-----CCcEEEEEeC
Q psy1545 136 KKIVVIGNGGIATELVHELS-----NVDIVWVVKD 165 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~-----g~~V~~i~~~ 165 (454)
.|++|||+|+.|+.+|..++ +.+|+++++.
T Consensus 2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~ 36 (233)
T d1xdia1 2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD 36 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC
Confidence 37999999999999887553 5689999864
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=86.15 E-value=0.33 Score=38.63 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=28.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~~ 38 (454)
-.|+|+|+|+.|+.++..++.. |. +|+++|+++.
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~--Ga~~Vi~~d~~~~ 63 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLR--GAGRIIGVGSRPI 63 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTT--TCSCEEEECCCHH
T ss_pred CEEEEEcCCcchhhhhhhhhcc--cccccccccchhh
Confidence 3699999999999999999987 65 7899988753
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=85.73 E-value=0.47 Score=36.29 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=27.6
Q ss_pred cEEEEC-CCHHHHHHHHHHhhcCCCCeEEEECCC
Q psy1545 4 TYLIIG-GGIAGVSCVEGLAFLHPGESIGLVTPS 36 (454)
Q Consensus 4 dvvIIG-gG~aGl~aA~~l~~~~~g~~v~lie~~ 36 (454)
+|.||| +|..|.++|+.|...+..-++.|+|..
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~ 35 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP 35 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence 699999 699999999999987444478898853
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=85.65 E-value=0.39 Score=37.16 Aligned_cols=33 Identities=15% Similarity=-0.001 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+|-|||.|..|.+.|..|++. |++++++++.+.
T Consensus 2 kIgiIG~G~mG~~ia~~l~~~--g~~v~~~~~~~~ 34 (152)
T d1i36a2 2 RVGFIGFGEVAQTLASRLRSR--GVEVVTSLEGRS 34 (152)
T ss_dssp EEEEESCSHHHHHHHHHHHHT--TCEEEECCTTCC
T ss_pred EEEEEcHHHHHHHHHHHHHHC--CCeEEEEcCchh
Confidence 699999999999999999998 889888876543
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=85.59 E-value=0.31 Score=38.18 Aligned_cols=33 Identities=24% Similarity=0.175 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+|-|||-|.-|...|..|.+. |++|+++|+.+.
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~--G~~V~~~d~~~~ 34 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKA--GYSLVVSDRNPE 34 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHH
T ss_pred EEEEEehhHHHHHHHHHHHHC--CCeEEEEeCCcc
Confidence 599999999999999999998 999999998753
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.56 E-value=0.39 Score=37.66 Aligned_cols=35 Identities=17% Similarity=0.092 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+.+|-+||-|.-|...|.+|.+. |++|.++|+.+.
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~--g~~v~~~d~~~~ 35 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKA--GYLLNVFDLVQS 35 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSSHH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHC--CCeEEEEECchh
Confidence 13699999999999999999998 899999998743
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=85.53 E-value=0.39 Score=32.44 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=26.6
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDK 166 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~ 166 (454)
|+|.|+|||..|-.++.+.. |.++.++...+
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~ 34 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA 34 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 68999999999999998875 99999887543
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.46 E-value=0.076 Score=44.73 Aligned_cols=28 Identities=25% Similarity=0.308 Sum_probs=22.8
Q ss_pred eEEEEcCchhHHHHHHHhc--CC------cEEEEEe
Q psy1545 137 KIVVIGNGGIATELVHELS--NV------DIVWVVK 164 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~------~V~~i~~ 164 (454)
||+|||+|.+|+-.|..|+ |. +++++.+
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~ 37 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYAD 37 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEES
T ss_pred EEEEECchHHHHHHHHHHHHCCCCceEEeeeeeccc
Confidence 7999999999999999996 54 4566554
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=85.35 E-value=0.4 Score=37.80 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=27.9
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.|+|+|+|+.|+.++..++.. |.++++++..+.
T Consensus 33 ~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~ 65 (168)
T d1uufa2 33 KVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEA 65 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGG
T ss_pred EEEEeccchHHHHHHHHhhcc--cccchhhccchh
Confidence 589999999999999888877 888888877543
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=84.95 E-value=0.31 Score=38.72 Aligned_cols=33 Identities=24% Similarity=0.151 Sum_probs=28.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+++|+|+|-++-+++..|.+. +.+|+++.|..
T Consensus 19 k~vlIlGaGGaarai~~aL~~~--~~~i~I~nR~~ 51 (171)
T d1p77a1 19 QHVLILGAGGATKGVLLPLLQA--QQNIVLANRTF 51 (171)
T ss_dssp CEEEEECCSHHHHTTHHHHHHT--TCEEEEEESSH
T ss_pred CEEEEECCcHHHHHHHHHHccc--CceeeeccchH
Confidence 4799999999999999999886 67899998763
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=84.53 E-value=0.52 Score=37.45 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=28.1
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~~ 38 (454)
.|+|+|+|+.|+.++..++.. |. +|++.|.++.
T Consensus 31 ~VlV~G~G~iGl~a~~~ak~~--Ga~~Vi~~d~~~~ 64 (174)
T d1e3ia2 31 TCAVFGLGCVGLSAIIGCKIA--GASRIIAIDINGE 64 (174)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGG
T ss_pred EEEEECCChHHHHHHHHHHHh--CCceeeeeccchH
Confidence 589999999999999999988 66 6777787653
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=84.27 E-value=0.53 Score=37.47 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCC-CeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPG-ESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g-~~v~lie~~~~ 38 (454)
.|+|+|+|+.|+.++..++.. | .+|+.+|.++.
T Consensus 32 tVlI~G~GgvGl~ai~~ak~~--G~~~Vi~vd~~~~ 65 (176)
T d1d1ta2 32 TCVVFGLGGVGLSVIMGCKSA--GASRIIGIDLNKD 65 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGG
T ss_pred EEEEECCCchhHHHHHHHHHc--CCceEEEecCcHH
Confidence 489999999999999999987 6 58999998764
|
| >d1m6ia3 d.87.1.1 (A:478-608) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.91 E-value=0.89 Score=33.38 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=34.4
Q ss_pred EEEEEECCeEEEEEEEcCCchHHHHHHHHhcCCCcchhh
Q psy1545 401 IKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIA 439 (454)
Q Consensus 401 ~k~~~~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~~ 439 (454)
+-+|+++++|+|+.+++--..+...+.+|+++.+.+|+.
T Consensus 87 VIFYLrd~~VVGVLLWNvFnrm~iAR~iI~~~~~~~Dln 125 (131)
T d1m6ia3 87 VIFYLRDKVVVGIVLWNIFNRMPIARKIIKDGEQHEDLN 125 (131)
T ss_dssp EEEEEETTEEEEEEEESCCSCHHHHHHHHHHCCBCSCST
T ss_pred EEEEecCCcEEEEEEecccCccHHHHHHHHcCCccchHH
Confidence 344459999999999999999999999999999999974
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.53 E-value=0.73 Score=33.47 Aligned_cols=33 Identities=21% Similarity=0.469 Sum_probs=28.6
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
..|+.|+|||..|-.+|.+.. |.++.++++++.
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 568999999999999998875 999999987654
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=83.10 E-value=0.58 Score=37.22 Aligned_cols=32 Identities=22% Similarity=0.094 Sum_probs=27.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+++|||+|-++-++++.|.+. + +|+|+.|..
T Consensus 19 k~vlIlGaGG~arai~~aL~~~--~-~i~I~nR~~ 50 (177)
T d1nvta1 19 KNIVIYGAGGAARAVAFELAKD--N-NIIIANRTV 50 (177)
T ss_dssp CEEEEECCSHHHHHHHHHHTSS--S-EEEEECSSH
T ss_pred CEEEEECCcHHHHHHHHHHccc--c-ceeeehhhh
Confidence 5799999999999999999775 5 899988853
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=83.04 E-value=0.67 Score=36.76 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++|-|||-|.-|...|.+|.+. |++|.++|+.+
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~--G~~V~~~dr~~ 34 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEK--GFKVAVFNRTY 34 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSH
T ss_pred CEEEEEeehHHHHHHHHHHHHC--CCeEEEEECCH
Confidence 4799999999999999999998 89999999864
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=82.98 E-value=0.71 Score=36.58 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+|-|||-|.-|...|.+|.+. |++|.++|+.+.
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~--G~~V~v~dr~~~ 36 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDH--GFVVCAFNRTVS 36 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSTH
T ss_pred CcEEEEeEhHHHHHHHHHHHHC--CCeEEEEcCCHH
Confidence 5789999999999999999998 899999998764
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=82.86 E-value=0.58 Score=39.47 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~~~ 39 (454)
.+|+|||.|-.|..+|..|++. |. +++|+|....-
T Consensus 31 ~~VliiG~GglGs~va~~La~~--Gvg~i~lvD~D~Ve 66 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASA--GVGNLTLLDFDTVS 66 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCSEEEEECCCBCC
T ss_pred CCEEEECCCHHHHHHHHHHHHc--CCCeEEEECCcccc
Confidence 5799999999999999999999 54 89999987543
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=82.79 E-value=0.51 Score=38.29 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=27.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
-.|+|+|+|+.|+.++..++..+ ..+|+++|..+
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~ 60 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNP 60 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCH
T ss_pred CEEEEECcCHHHHHHHHHHHhhc-ccceeeecccc
Confidence 36899999999999999888762 34788888764
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=82.54 E-value=0.73 Score=35.91 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=28.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPS 36 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~ 36 (454)
.+++|||+|-.|-.++..|... +. +++++.|.
T Consensus 25 ~~ilviGaG~~g~~v~~~L~~~--g~~~i~v~nRt 57 (159)
T d1gpja2 25 KTVLVVGAGEMGKTVAKSLVDR--GVRAVLVANRT 57 (159)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH--CCSEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCcEEEEEcCc
Confidence 4699999999999999999998 65 68888876
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.53 E-value=0.63 Score=36.56 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=28.7
Q ss_pred hhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCC
Q psy1545 132 LKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDK 166 (454)
Q Consensus 132 ~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~ 166 (454)
++++++++|+|+|.+|.-.++.+. |++|..+.+++
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~ 61 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS 61 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhccccccccccch
Confidence 456899999999999988877664 99998887654
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.39 E-value=0.5 Score=37.00 Aligned_cols=33 Identities=21% Similarity=0.068 Sum_probs=28.1
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.|+|+|+|+.|+.++..++.. +.+|++++.++.
T Consensus 30 ~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~ 62 (168)
T d1rjwa2 30 WVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDE 62 (168)
T ss_dssp EEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHH
T ss_pred EEEEeecccchhhhhHHHhcC--CCeEeccCCCHH
Confidence 589999999999998888876 889999987653
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=82.31 E-value=0.56 Score=40.54 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=30.8
Q ss_pred cccEEEECC-CHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGG-GIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGg-G~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+.+|+|+|| |..|...+.+|.+. |++|+++.|.+.
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~--G~~V~~~~R~~~ 38 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISL--GHPTYVLFRPEV 38 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCCc
Confidence 357999997 99999999999998 899999988643
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=82.27 E-value=0.57 Score=40.15 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=31.3
Q ss_pred cccEEEECC-CHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGG-GIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGg-G~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+++|+|+|| |..|-..+..|.+. |++|+.+++.+.
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~--G~~V~~l~R~~~ 38 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDL--GHPTFLLVREST 38 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCeEEEEECCCc
Confidence 468999998 99999999999998 899999998754
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.06 E-value=0.52 Score=37.63 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=26.0
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKD 165 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~ 165 (454)
+|.|+|+|..|.-+|..|. |.+|+++.|.
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~ 32 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE 32 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence 6899999999999999997 8999998763
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=81.38 E-value=0.39 Score=35.95 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=27.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCe-EEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGES-IGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~-v~lie~~~~~ 39 (454)
+++++|+|+|-+|.+.+..+.+. .+++ +.++|..+..
T Consensus 3 ~~~v~I~GaG~~G~~l~~~l~~~-~~~~iv~fiDdd~~k 40 (126)
T d2dt5a2 3 KWGLCIVGMGRLGSALADYPGFG-ESFELRGFFDVDPEK 40 (126)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCC-SSEEEEEEEESCTTT
T ss_pred CceEEEEcCCHHHHHHHHhHhhc-CCcEEEEEEeCchHh
Confidence 46899999999999998877654 3555 4566766543
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=81.20 E-value=0.64 Score=39.58 Aligned_cols=34 Identities=18% Similarity=0.116 Sum_probs=30.3
Q ss_pred cccEEEECC-CHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGG-GIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGg-G~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
+|+|+|.|| |..|-..+..|.+. |++|+.+++..
T Consensus 1 ~MKIlItGasGfiG~~l~~~L~~~--g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 1 HMKILITGANGQLGREIQKQLKGK--NVEVIPTDVQD 35 (281)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTS--SEEEEEECTTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC--CCEEEEeechh
Confidence 357999998 99999999999987 89999998764
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.15 E-value=0.46 Score=37.15 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=28.6
Q ss_pred hcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEe
Q psy1545 133 KSAKKIVVIGNGGIATELVHELS--NVDIVWVVK 164 (454)
Q Consensus 133 ~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~ 164 (454)
-.+|+++|+|-|.+|-.+|..++ |++|++.+.
T Consensus 22 l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~ 55 (163)
T d1li4a1 22 IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEI 55 (163)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred ecCCEEEEeccccccHHHHHHHHhCCCeeEeeec
Confidence 35899999999999999999997 999998754
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.85 E-value=0.82 Score=35.63 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
..++|||-|..|-.+|..++.. |.+|++.|..|.
T Consensus 25 k~v~V~GyG~iG~g~A~~~rg~--G~~V~v~e~dp~ 58 (163)
T d1li4a1 25 KVAVVAGYGDVGKGCAQALRGF--GARVIITEIDPI 58 (163)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHH
T ss_pred CEEEEeccccccHHHHHHHHhC--CCeeEeeecccc
Confidence 5799999999999999999998 999999999763
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.84 E-value=0.57 Score=37.40 Aligned_cols=30 Identities=20% Similarity=0.447 Sum_probs=26.3
Q ss_pred eEEEE-cCchhHHHHHHHhc--CCcEEEEEeCC
Q psy1545 137 KIVVI-GNGGIATELVHELS--NVDIVWVVKDK 166 (454)
Q Consensus 137 ~vvVv-G~G~~g~e~a~~l~--g~~V~~i~~~~ 166 (454)
|+.|+ |+|.+|..+|..|+ |.+|++..|++
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~ 34 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 68899 66999999999997 99999998854
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=80.79 E-value=0.9 Score=36.20 Aligned_cols=34 Identities=21% Similarity=0.124 Sum_probs=28.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+++|||+|-+|-+++..|.+.+ -.+++++.+.+
T Consensus 19 k~vlIlGaGGaarai~~al~~~g-~~~i~i~nR~~ 52 (182)
T d1vi2a1 19 KTMVLLGAGGASTAIGAQGAIEG-LKEIKLFNRRD 52 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-CSEEEEEECSS
T ss_pred CEEEEECCcHHHHHHHHHHhhcC-CceEeeeccch
Confidence 47999999999999999999983 33788988764
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.64 E-value=1.9 Score=38.11 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=30.2
Q ss_pred cccEEEECC-CHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGG-GIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGg-G~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
+++|+|.|| |+.|...+..|.++ |++|+.+++..
T Consensus 15 nMKILVTGgsGfIGs~lv~~L~~~--g~~V~~~d~~~ 49 (363)
T d2c5aa1 15 NLKISITGAGGFIASHIARRLKHE--GHYVIASDWKK 49 (363)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC--cCEEEEEeCCC
Confidence 578999997 99999999999998 89999998654
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=80.30 E-value=0.94 Score=34.90 Aligned_cols=32 Identities=22% Similarity=0.173 Sum_probs=28.4
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
+|.|||.|--|.+.|..|.+. +.++++.++.+
T Consensus 2 kIg~IG~G~mG~al~~~l~~~--~~~i~v~~r~~ 33 (152)
T d2ahra2 2 KIGIIGVGKMASAIIKGLKQT--PHELIISGSSL 33 (152)
T ss_dssp EEEEECCSHHHHHHHHHHTTS--SCEEEEECSSH
T ss_pred EEEEEeccHHHHHHHHHHHhC--CCeEEEEcChH
Confidence 699999999999999999987 78999887753
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=80.23 E-value=0.96 Score=34.76 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=28.3
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
+|.+||+|.-|.+.|..|.+.+ ..+|.++++++
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~~-~~~i~v~~r~~ 34 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQG-GYRIYIANRGA 34 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC-SCEEEEECSSH
T ss_pred EEEEEcCcHHHHHHHHHHHHCC-CCcEEEEeCCh
Confidence 6999999999999999998873 37888888764
|