Psyllid ID: psy15467

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MSSMGKKLRRDTIDQERPLRSLPVPAQLVESPLLSGGHLQVSPTPDGLTPGGHQNPILRLCVSSRLEPNVDLRQSDATSDHDIRTSGLLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSIIVHGQNLDSLYGANRPSWPCYEKNAGYRVKRPLERTEASCETSLKGRTD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccEEccccccccccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHccHHHHccEEEEcccHHHHHccccccccccccccccccccHHHHHHHHHccccccHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccEEEccccccccccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHccccEEccEEEEEEccccEEcccHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHEEEccccHHHHHHHccHHHccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHccccc
Coil and Loop (DISEMBL)
mssmgkklrrdtidqerplrslpvpaqlvespllsgghlqvsptpdgltpgghqnpilrlcvssrlepnvdlrqsdatsdhdirtsglllVDTKIQYSGFVFLLdwnqtsiyaspTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPflkektrdkIIVHGQnldslygylprdilpieifngsiivhgqnldslyganrpswpcyeknagyrvkrplerteaSCETSLKGRTD
Flexible Loop (DISEMBL)
mssmgkklrrdtidqerplrslpvpAQLVESPLLSGGHLQVSPTPDGLTPGGHQNPILRLCVSSRLEPNVDlrqsdatsdhdirtSGLLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLkektrdkiivhgqnldslygYLPRDILPIEIFNGSIIVHGQNLDSLYGANRPSWPCYEKNagyrvkrplerteascetslkgrtd
Low Complexity Region (SEG)
MSSMGKKLRRDTIDQERPLRSLPVPAQLVESPLLSGGHLQVSPTPDGLTPGGHQNPILRLCVSSRLEPNVDLRQSDATSDHDIRTSGLLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSIIVHGQNLDSLYGANRPSWPCYEKNAGYRVKRPLERTEASCETSLKGRTD
Disordered region (IsUnstruct)
********************************************************ILRLCV********************IRTSGLLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSIIVHGQNLDSLYGANRPSWPCYEKNAGYRV********************
Disordered Region (DISOPRED)
******K*RRDTIDQERPLRSLPVPAQLVESPLLSGGHLQVSPTPDGLTPGGHQNPILRLCVSSRLEPNVDLRQSDATSDHDIRTSGLLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSIIVHGQNLDSLYGANRPSWPCYEK********************LKGR**
Disordered Region (DISEMBL)
***********TIDQERPLRSLPVPAQLVESPLLSGGHLQVSPTPDGLTPGGHQNPILRLCVSSRLEPNVDLRQSDATSDHDIRTSGLLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSIIVHGQNLDSLYGANRPSWPCYEKNAGYRVKRPL****************
Disordered Region (DISPRO)
*****KKLRRDTIDQERPLRSLPVPAQLVESPLLSGGHLQVSPTPDGLTPGGHQNPILRLCVSSRLEPNVDLRQSDATSDHDIRTSGLLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSIIVHGQNLDSLYGANRPSWPCYEKNAGYR*********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSMGKKLRRDTIDQERPLRSLPVPAQLVESPLLSGGHLQVSPTPDGLTPGGHQNPILRLCVSSRLEPNVDLRQSDATSDHDIRTSGLLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSIIVHGQNLDSLYGANRPSWPCYEKNAGYRVKRPLERTEASCETSLKGRTD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q95KF7	327	Clavesin-2 OS=Macaca fasc	N/A	N/A	0.626	0.461	0.337	2e-21
Q5SYC1	327	Clavesin-2 OS=Homo sapien	yes	N/A	0.626	0.461	0.337	2e-21
A6JUQ6	327	Clavesin-2 OS=Rattus norv	yes	N/A	0.626	0.461	0.337	3e-21
Q5M7E1	332	Clavesin-1 OS=Xenopus lae	N/A	N/A	0.431	0.313	0.422	1e-20
Q9D4C9	354	Clavesin-1 OS=Mus musculu	yes	N/A	0.431	0.293	0.412	2e-20
Q8IUQ0	354	Clavesin-1 OS=Homo sapien	no	N/A	0.431	0.293	0.412	2e-20
Q5RCA6	354	Clavesin-1 OS=Pongo abeli	yes	N/A	0.431	0.293	0.412	2e-20
A6JFQ6	354	Clavesin-1 OS=Rattus norv	yes	N/A	0.431	0.293	0.412	3e-20
Q8BG92	327	Clavesin-2 OS=Mus musculu	no	N/A	0.626	0.461	0.325	3e-20
Q5SPP0	329	Clavesin-2 OS=Danio rerio	yes	N/A	0.410	0.300	0.417	6e-20

>sp|Q95KF7|CLVS2_MACFA Clavesin-2 OS=Macaca fascicularis GN=CLVS2 PE=2 SV=2

 Score =  102 bits (254), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 95/169 (56%), Gaps = 18/169 (10%)

Query: 89  LLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTMISGLQDCYPARFKAIHFINEPVQ 144
           ++ D ++Q +GFV ++DW+  +   +    P++LR  I GLQD +PARF  IHF+N+P  
Sbjct: 147 MIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRLAIEGLQDSFPARFGGIHFVNQPWY 206

Query: 145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNG------------SI 192
           +  L  +++PFLKEKTR +I +HG NL+SL+  +  +ILP E F G            ++
Sbjct: 207 IHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEILPSE-FGGMLPPYDMGTWARTL 265

Query: 193 IVHGQNLDSLYGANRPSWPCYEKNAGYRVKRPLERTEASCETSLKGRTD 241
           + H  + DS Y  +  S P  E       K  ++R+++  + ++  R D
Sbjct: 266 LDHEYDDDSEYNVDSYSMPVKEVEKELSPK-SMKRSQSVVDPTVLKRMD 313

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).
Macaca fascicularis (taxid: 9541)

>sp|Q5SYC1|CLVS2_HUMAN Clavesin-2 OS=Homo sapiens GN=CLVS2 PE=2 SV=1

 Score =  102 bits (254), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 95/169 (56%), Gaps = 18/169 (10%)

Query: 89  LLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTMISGLQDCYPARFKAIHFINEPVQ 144
           ++ D ++Q +GFV ++DW+  +   +    P++LR  I GLQD +PARF  IHF+N+P  
Sbjct: 147 MIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRLAIEGLQDSFPARFGGIHFVNQPWY 206

Query: 145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNG------------SI 192
           +  L  +++PFLKEKTR +I +HG NL+SL+  +  +ILP E F G            ++
Sbjct: 207 IHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEILPSE-FGGMLPPYDMGTWARTL 265

Query: 193 IVHGQNLDSLYGANRPSWPCYEKNAGYRVKRPLERTEASCETSLKGRTD 241
           + H  + DS Y  +  S P  E       K  ++R+++  + ++  R D
Sbjct: 266 LDHEYDDDSEYNVDSYSMPVKEVEKELSPK-SMKRSQSVVDPTVLKRMD 313

Required for normal morphology of late endosomes and/or lysosomes in neurons (By similarity). Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Homo sapiens (taxid: 9606)

>sp|A6JUQ6|CLVS2_RAT Clavesin-2 OS=Rattus norvegicus GN=Clvs2 PE=1 SV=1

 Score =  102 bits (253), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 95/169 (56%), Gaps = 18/169 (10%)

Query: 89  LLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTMISGLQDCYPARFKAIHFINEPVQ 144
           ++ D ++Q +GFV ++DW+  +   +    P++LR  I GLQD +PARF  IHF+N+P  
Sbjct: 147 MIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRLAIEGLQDSFPARFGGIHFVNQPWY 206

Query: 145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNG------------SI 192
           +  L  +++PFLKEKTR +I +HG NL+SL+  +  +ILP E F G            ++
Sbjct: 207 IHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEILPSE-FGGMLPPYDMGTWARTL 265

Query: 193 IVHGQNLDSLYGANRPSWPCYEKNAGYRVKRPLERTEASCETSLKGRTD 241
           + H  + DS Y  +  S P  E +     K  ++R+++  + +   R D
Sbjct: 266 LDHEYDDDSEYNVDSYSMPVNEVDKELSPK-SMKRSQSVVDPTALKRMD 313

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Rattus norvegicus (taxid: 10116)

>sp|Q5M7E1|CLVS1_XENLA Clavesin-1 OS=Xenopus laevis GN=clvs1 PE=2 SV=1

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 73/109 (66%), Gaps = 5/109 (4%)

Query: 88  LLLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTMISGLQDCYPARFKAIHFINEPV 143
           +L+ D ++Q +GF+ ++DW+  S   +    P++LR  I GLQD +PARF  +HF+N+P 
Sbjct: 146 VLIEDQELQINGFILIIDWSNFSFKQASKLTPSILRLAIEGLQDSFPARFGGVHFVNQPW 205

Query: 144 QVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSI 192
            +  L  ++KPFLK+KTR +I +HG NL+SL+  +  D LP E F G++
Sbjct: 206 YIHALYTIIKPFLKDKTRKRIFLHGNNLNSLHQLIHPDCLPSE-FGGTL 253

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Xenopus laevis (taxid: 8355)

>sp|Q9D4C9|CLVS1_MOUSE Clavesin-1 OS=Mus musculus GN=Clvs1 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 73/109 (66%), Gaps = 5/109 (4%)

Query: 88  LLLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTMISGLQDCYPARFKAIHFINEPV 143
           +L+ D ++Q +GF+ ++DW+  S   +    P++L+  I GLQD +PARF  +HF+N+P 
Sbjct: 168 VLIEDPELQINGFILIIDWSNFSFKQASKLTPSILKLAIEGLQDSFPARFGGVHFVNQPW 227

Query: 144 QVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSI 192
            +  L  L+KPFLK+KTR +I +HG NL+SL+  +  + LP E F G++
Sbjct: 228 YIHALYTLIKPFLKDKTRKRIFLHGNNLNSLHQLIHPEFLPSE-FGGTL 275

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Mus musculus (taxid: 10090)

>sp|Q8IUQ0|CLVS1_HUMAN Clavesin-1 OS=Homo sapiens GN=CLVS1 PE=1 SV=1

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 73/109 (66%), Gaps = 5/109 (4%)

Query: 88  LLLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTMISGLQDCYPARFKAIHFINEPV 143
           +L+ D ++Q +GF+ ++DW+  S   +    P++L+  I GLQD +PARF  +HF+N+P 
Sbjct: 168 VLIEDPELQINGFILIIDWSNFSFKQASKLTPSILKLAIEGLQDSFPARFGGVHFVNQPW 227

Query: 144 QVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSI 192
            +  L  L+KPFLK+KTR +I +HG NL+SL+  +  + LP E F G++
Sbjct: 228 YIHALYTLIKPFLKDKTRKRIFLHGNNLNSLHQLIHPEFLPSE-FGGTL 275

Required for normal morphology of late endosomes and/or lysosomes in neurons (By similarity). Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Homo sapiens (taxid: 9606)

>sp|Q5RCA6|CLVS1_PONAB Clavesin-1 OS=Pongo abelii GN=CLVS1 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 73/109 (66%), Gaps = 5/109 (4%)

Query: 88  LLLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTMISGLQDCYPARFKAIHFINEPV 143
           +L+ D ++Q +GF+ ++DW+  S   +    P++L+  I GLQD +PARF  +HF+N+P 
Sbjct: 168 VLIEDPELQINGFILIIDWSNFSFKQASKLTPSILKLAIEGLQDSFPARFGGVHFVNQPW 227

Query: 144 QVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSI 192
            +  L  L+KPFLK+KTR +I +HG NL+SL+  +  + LP E F G++
Sbjct: 228 YIHALYTLIKPFLKDKTRKRIFLHGNNLNSLHQLIHPEFLPSE-FGGTL 275

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Pongo abelii (taxid: 9601)

>sp|A6JFQ6|CLVS1_RAT Clavesin-1 OS=Rattus norvegicus GN=Clvs1 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 73/109 (66%), Gaps = 5/109 (4%)

Query: 88  LLLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTMISGLQDCYPARFKAIHFINEPV 143
           +L+ D ++Q +GF+ ++DW+  S   +    P++L+  I GLQD +PARF  +HF+N+P 
Sbjct: 168 VLIEDPELQINGFILIIDWSNFSFKQASKLTPSILKLAIEGLQDSFPARFGGVHFVNQPW 227

Query: 144 QVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSI 192
            +  L  L+KPFLK+KTR +I +HG NL+SL+  +  + LP E F G++
Sbjct: 228 YIHALYTLIKPFLKDKTRKRIFLHGNNLNSLHQLIHPEFLPSE-FGGTL 275

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Rattus norvegicus (taxid: 10116)

>sp|Q8BG92|CLVS2_MOUSE Clavesin-2 OS=Mus musculus GN=Clvs2 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 94/169 (55%), Gaps = 18/169 (10%)

Query: 89  LLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTMISGLQDCYPARFKAIHFINEPVQ 144
           ++ D ++Q +GFV ++DW+  +   +    P +LR  I GLQD +PARF  IHF+N+P  
Sbjct: 147 MIEDPELQVNGFVLIIDWSNFTFKQASKLTPNMLRLAIEGLQDSFPARFGGIHFVNQPWY 206

Query: 145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNG------------SI 192
           +  L  +++PFLKEKTR +I +HG NL+SL+  +  +ILP E F G            ++
Sbjct: 207 IHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEILPSE-FGGMLPPYDMGTWARTL 265

Query: 193 IVHGQNLDSLYGANRPSWPCYEKNAGYRVKRPLERTEASCETSLKGRTD 241
           + H  + DS Y  +  + P  + +     K  ++R+++  + +   R D
Sbjct: 266 LDHEYDDDSEYNVDSYNMPVKDVDKELSPK-SMKRSQSVVDPTALKRMD 313

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Mus musculus (taxid: 10090)

>sp|Q5SPP0|CLVS2_DANRE Clavesin-2 OS=Danio rerio GN=clvs2 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 70/103 (67%), Gaps = 4/103 (3%)

Query: 89  LLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTMISGLQDCYPARFKAIHFINEPVQ 144
           ++ D ++Q +GFV ++DW+  +   +    P++LR  I GLQD +PARF  IHF+N+P  
Sbjct: 147 MIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRLAIEGLQDSFPARFGGIHFVNQPWY 206

Query: 145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEI 187
           +  L  +++PFLK+KTR +I +HG NL+SL+  +  +ILP E+
Sbjct: 207 IHALYTVIRPFLKDKTRKRIFMHGNNLNSLHQLILPEILPSEL 249

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
193685990	287	PREDICTED: clavesin-2-like isoform 1 [Ac	0.410	0.344	0.533	2e-26
158297024	262	AGAP008133-PA [Anopheles gambiae str. PE	0.410	0.377	0.504	2e-22
242007008	272	Cellular retinaldehyde-binding protein,	0.373	0.330	0.5	6e-22
157110946	358	retinaldehyde binding protein [Aedes aeg	0.410	0.276	0.495	8e-22
170029318	360	cellular retinaldehyde-binding protein [	0.410	0.275	0.495	8e-22
91088535	281	PREDICTED: similar to retinaldehyde bind	0.410	0.352	0.475	2e-21
350398840	470	PREDICTED: clavesin-2-like [Bombus impat	0.414	0.212	0.5	8e-21
383864492	458	PREDICTED: clavesin-2-like [Megachile ro	0.414	0.218	0.5	9e-21
340712167	470	PREDICTED: clavesin-2-like [Bombus terre	0.414	0.212	0.5	9e-21
328783958	467	PREDICTED: clavesin-2-like [Apis mellife	0.414	0.214	0.5	1e-20

>gi|193685990|ref|XP_001943308.1| PREDICTED: clavesin-2-like isoform 1 [Acyrthosiphon pisum] gi|328713177|ref|XP_003245010.1| PREDICTED: clavesin-2-like isoform 2 [Acyrthosiphon pisum]

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 79/103 (76%), Gaps = 4/103 (3%)

Query: 89  LLVDTKIQYSGFVFLLDWN----QTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQ 144
           L+ D   QY+GFVF++DW     + ++  SP LL  M+ GLQDC+PA+ KA+HFIN+P  
Sbjct: 160 LIQDVNTQYNGFVFIVDWTNFTARQTMNISPRLLHVMLQGLQDCFPAKIKAVHFINQPWY 219

Query: 145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEI 187
           +D L+++VKPFLKEKT++KII+HG NL++L+ Y P+DILP E+
Sbjct: 220 IDGLMSVVKPFLKEKTKNKIILHGLNLNTLHEYFPKDILPSEL 262

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297024|ref|XP_317327.4| AGAP008133-PA [Anopheles gambiae str. PEST] gi|157014996|gb|EAA12417.4| AGAP008133-PA [Anopheles gambiae str. PEST]

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 72/103 (69%), Gaps = 4/103 (3%)

Query: 89  LLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTMISGLQDCYPARFKAIHFINEPVQ 144
           LL D + Q +GF+ ++DW   +   S    P +L+ MI GLQDC+P RFKAIHFI +P  
Sbjct: 132 LLEDKQNQANGFIAIVDWTNFTFRQSSNLNPKVLKLMIEGLQDCFPVRFKAIHFIGQPWY 191

Query: 145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEI 187
           V+  LA+++PFLKEKTRD+I +HG NL +L+  + RDILP E+
Sbjct: 192 VEAALAVIRPFLKEKTRDRIKLHGSNLSTLHDCVARDILPTEL 234

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007008|ref|XP_002424334.1| Cellular retinaldehyde-binding protein, putative [Pediculus humanus corporis] gi|212507734|gb|EEB11596.1| Cellular retinaldehyde-binding protein, putative [Pediculus humanus corporis]

 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 70/94 (74%), Gaps = 4/94 (4%)

Query: 98  SGFVFLLDWNQTSIYAS----PTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVK 153
           +GFVF++DW + S   S    P +L+ MI GLQDC+PA+FK  HFIN+P  V++ L ++K
Sbjct: 157 NGFVFVIDWTEFSFKQSSNLAPKILKLMIEGLQDCFPAKFKGFHFINQPWYVEMALTVIK 216

Query: 154 PFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEI 187
           PFLKEK++++I +HG NL +L+ Y+ +DILP E+
Sbjct: 217 PFLKEKSKNRIYLHGNNLSTLHEYVAKDILPTEL 250

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157110946|ref|XP_001651322.1| retinaldehyde binding protein [Aedes aegypti] gi|108878569|gb|EAT42794.1| AAEL005701-PA [Aedes aegypti]

 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 72/103 (69%), Gaps = 4/103 (3%)

Query: 89  LLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTMISGLQDCYPARFKAIHFINEPVQ 144
           LL D + Q +GF+ ++DW   +   S    P +L+ MI GLQDC+P RFKAIHFI +P  
Sbjct: 158 LLEDKQNQANGFIAIVDWTNFTFRQSSNLNPKVLKLMIEGLQDCFPVRFKAIHFIGQPWY 217

Query: 145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEI 187
           V+  LA+++PFLKEKTR++I +HG NL +L+  + RDILP E+
Sbjct: 218 VEAALAVIRPFLKEKTRERIKLHGGNLSTLHDCVARDILPTEL 260

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170029318|ref|XP_001842540.1| cellular retinaldehyde-binding protein [Culex quinquefasciatus] gi|167881643|gb|EDS45026.1| cellular retinaldehyde-binding protein [Culex quinquefasciatus]

 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 72/103 (69%), Gaps = 4/103 (3%)

Query: 89  LLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTMISGLQDCYPARFKAIHFINEPVQ 144
           LL D + Q +GF+ ++DW   +   S    P +L+ MI GLQDC+P RFKAIHFI +P  
Sbjct: 159 LLEDKQNQANGFIAIVDWTNFTFRQSSNLNPKVLKLMIEGLQDCFPVRFKAIHFIGQPWY 218

Query: 145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEI 187
           V+  LA+++PFLKEKTR++I +HG NL +L+  + RDILP E+
Sbjct: 219 VEAALAVIRPFLKEKTRERIKLHGGNLSTLHDCVARDILPTEL 261

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088535|ref|XP_972345.1| PREDICTED: similar to retinaldehyde binding protein [Tribolium castaneum] gi|270011712|gb|EFA08160.1| hypothetical protein TcasGA2_TC005781 [Tribolium castaneum]

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 70/103 (67%), Gaps = 4/103 (3%)

Query: 89  LLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTMISGLQDCYPARFKAIHFINEPVQ 144
           L+ +   Q  GFV ++DW + S   S    P++L+ MI GLQDC+PA+FK IHFI +P  
Sbjct: 149 LVNEVHNQARGFVVIVDWTEFSFRQSTNLKPSILKLMIEGLQDCFPAKFKGIHFIGQPWY 208

Query: 145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEI 187
           V+  L  +KPFLKEK +++I VHG NL +L+ Y+ +DILP E+
Sbjct: 209 VEAALTFIKPFLKEKIKERIFVHGNNLSTLHDYVHKDILPAEL 251

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350398840|ref|XP_003485320.1| PREDICTED: clavesin-2-like [Bombus impatiens]

 Score =  106 bits (265), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 72/104 (69%), Gaps = 4/104 (3%)

Query: 88  LLLVDTKIQYSGFVFLLDWNQTSIYASPTL----LRTMISGLQDCYPARFKAIHFINEPV 143
           +L+ D + Q SGFV ++DW+  S+     L    LR +I+ L+  +PARFKAIHF++ P+
Sbjct: 155 ILIQDPRNQQSGFVAVVDWSGFSLRQGGALGAAALRNLIAALRGRFPARFKAIHFLSAPL 214

Query: 144 QVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEI 187
            V   LALVKPFL EKTR+KI +HG NL +L+ +LP DILP E+
Sbjct: 215 YVQATLALVKPFLDEKTRNKIYLHGNNLSTLHEHLPTDILPAEL 258

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864492|ref|XP_003707712.1| PREDICTED: clavesin-2-like [Megachile rotundata]

 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 72/104 (69%), Gaps = 4/104 (3%)

Query: 88  LLLVDTKIQYSGFVFLLDWNQTSIYASPTL----LRTMISGLQDCYPARFKAIHFINEPV 143
           +L+ D + Q SGFV ++DW+  S+     L    LR +I+ L+  +PARFKAIHF++ P+
Sbjct: 155 ILIQDPRNQQSGFVAVVDWSGFSLRQGGALGAAALRNLIAALRGRFPARFKAIHFLSAPL 214

Query: 144 QVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEI 187
            V   LALVKPFL EKTR+KI +HG NL +L+ +LP DILP E+
Sbjct: 215 YVQATLALVKPFLDEKTRNKIYLHGNNLSTLHEHLPTDILPAEL 258

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712167|ref|XP_003394635.1| PREDICTED: clavesin-2-like [Bombus terrestris]

 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 72/104 (69%), Gaps = 4/104 (3%)

Query: 88  LLLVDTKIQYSGFVFLLDWNQTSIYASPTL----LRTMISGLQDCYPARFKAIHFINEPV 143
           +L+ D + Q SGFV ++DW+  S+     L    LR +I+ L+  +PARFKAIHF++ P+
Sbjct: 155 ILIQDPRNQQSGFVAVVDWSGFSLRQGGALGAAALRNLIAALRGRFPARFKAIHFLSAPL 214

Query: 144 QVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEI 187
            V   LALVKPFL EKTR+KI +HG NL +L+ +LP DILP E+
Sbjct: 215 YVQATLALVKPFLDEKTRNKIYLHGNNLSTLHEHLPTDILPAEL 258

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783958|ref|XP_396934.4| PREDICTED: clavesin-2-like [Apis mellifera]

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 72/104 (69%), Gaps = 4/104 (3%)

Query: 88  LLLVDTKIQYSGFVFLLDWNQTSIYASPTL----LRTMISGLQDCYPARFKAIHFINEPV 143
           +L+ D + Q SGFV ++DW+  S+     L    LR +I+ L+  +PARFKAIHF++ P+
Sbjct: 155 ILIQDPRNQQSGFVAVVDWSGFSLRQGGALGAAALRNLIAALRGRFPARFKAIHFLSAPL 214

Query: 144 QVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEI 187
            V   LALVKPFL EKTR+KI +HG NL +L+ +LP DILP E+
Sbjct: 215 YVQATLALVKPFLDEKTRNKIYLHGNNLSTLHEHLPTDILPAEL 258

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
UNIPROTKB|Q5M7E1	332	clvs1 "Clavesin-1" [Xenopus la	0.431	0.313	0.440	1.5e-21
UNIPROTKB|E1C6S0	327	CLVS2 "Uncharacterized protein	0.427	0.314	0.462	3e-21
UNIPROTKB|E1BHP4	327	CLVS2 "Uncharacterized protein	0.427	0.314	0.462	3e-21
UNIPROTKB|F1PL15	327	CLVS2 "Uncharacterized protein	0.427	0.314	0.462	3e-21
UNIPROTKB|Q5SYC1	327	CLVS2 "Clavesin-2" [Homo sapie	0.427	0.314	0.462	3e-21
UNIPROTKB|Q8IUQ0	354	CLVS1 "Clavesin-1" [Homo sapie	0.630	0.429	0.354	3e-21
UNIPROTKB|F1S2T8	327	CLVS2 "Uncharacterized protein	0.427	0.314	0.462	3e-21
UNIPROTKB|Q5RCA6	354	CLVS1 "Clavesin-1" [Pongo abel	0.630	0.429	0.354	3e-21
UNIPROTKB|Q95KF7	327	CLVS2 "Clavesin-2" [Macaca fas	0.427	0.314	0.462	3e-21
RGD|1306801	327	Clvs2 "clavesin 2" [Rattus nor	0.427	0.314	0.462	3e-21

UNIPROTKB|Q5M7E1 clvs1 "Clavesin-1" [Xenopus laevis (taxid:8355)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 48/109 (44%), Positives = 74/109 (67%)

Query:    88 LLLVDTKIQYSGFVFLLDWNQTSI-YAS---PTLLRTMISGLQDCYPARFKAIHFINEPV 143
             +L+ D ++Q +GF+ ++DW+  S   AS   P++LR  I GLQD +PARF  +HF+N+P 
Sbjct:   146 VLIEDQELQINGFILIIDWSNFSFKQASKLTPSILRLAIEGLQDSFPARFGGVHFVNQPW 205

Query:   144 QVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSI 192
              +  L  ++KPFLK+KTR +I +HG NL+SL+  +  D LP E F G++
Sbjct:   206 YIHALYTIIKPFLKDKTRKRIFLHGNNLNSLHQLIHPDCLPSE-FGGTL 253

GO:0005768 "endosome" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0007040 "lysosome organization" evidence=ISS

GO:0030136 "clathrin-coated vesicle" evidence=ISS

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISS

UNIPROTKB|E1C6S0 CLVS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 50/108 (46%), Positives = 73/108 (67%)

Query:    89 LLVDTKIQYSGFVFLLDW-NQTSIYAS---PTLLRTMISGLQDCYPARFKAIHFINEPVQ 144
             ++ D ++Q +GFV ++DW N T   AS   P++LR  I GLQD +PARF  IHF+N+P  
Sbjct:   147 MIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRLAIEGLQDSFPARFGGIHFVNQPWY 206

Query:   145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSI 192
             +  L  +++PFLKEKTR +I +HG NL+SL+  +  +ILP E F G +
Sbjct:   207 IHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEILPSE-FGGML 253

GO:0005215 "transporter activity" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA

UNIPROTKB|E1BHP4 CLVS2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 50/108 (46%), Positives = 73/108 (67%)

Query:    89 LLVDTKIQYSGFVFLLDW-NQTSIYAS---PTLLRTMISGLQDCYPARFKAIHFINEPVQ 144
             ++ D ++Q +GFV ++DW N T   AS   P++LR  I GLQD +PARF  IHF+N+P  
Sbjct:   147 MIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRLAIEGLQDSFPARFGGIHFVNQPWY 206

Query:   145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSI 192
             +  L  +++PFLKEKTR +I +HG NL+SL+  +  +ILP E F G +
Sbjct:   207 IHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEILPSE-FGGML 253

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|F1PL15 CLVS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 50/108 (46%), Positives = 73/108 (67%)

Query:    89 LLVDTKIQYSGFVFLLDW-NQTSIYAS---PTLLRTMISGLQDCYPARFKAIHFINEPVQ 144
             ++ D ++Q +GFV ++DW N T   AS   P++LR  I GLQD +PARF  IHF+N+P  
Sbjct:   147 MIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRLAIEGLQDSFPARFGGIHFVNQPWY 206

Query:   145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSI 192
             +  L  +++PFLKEKTR +I +HG NL+SL+  +  +ILP E F G +
Sbjct:   207 IHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEILPSE-FGGML 253

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|Q5SYC1 CLVS2 "Clavesin-2" [Homo sapiens (taxid:9606)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 50/108 (46%), Positives = 73/108 (67%)

Query:    89 LLVDTKIQYSGFVFLLDW-NQTSIYAS---PTLLRTMISGLQDCYPARFKAIHFINEPVQ 144
             ++ D ++Q +GFV ++DW N T   AS   P++LR  I GLQD +PARF  IHF+N+P  
Sbjct:   147 MIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRLAIEGLQDSFPARFGGIHFVNQPWY 206

Query:   145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSI 192
             +  L  +++PFLKEKTR +I +HG NL+SL+  +  +ILP E F G +
Sbjct:   207 IHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEILPSE-FGGML 253

GO:0005215 "transporter activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0007040 "lysosome organization" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0030136 "clathrin-coated vesicle" evidence=ISS

UNIPROTKB|Q8IUQ0 CLVS1 "Clavesin-1" [Homo sapiens (taxid:9606)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 57/161 (35%), Positives = 89/161 (55%)

Query:    88 LLLVDTKIQYSGFVFLLDWNQTSI-YAS---PTLLRTMISGLQDCYPARFKAIHFINEPV 143
             +L+ D ++Q +GF+ ++DW+  S   AS   P++L+  I GLQD +PARF  +HF+N+P 
Sbjct:   168 VLIEDPELQINGFILIIDWSNFSFKQASKLTPSILKLAIEGLQDSFPARFGGVHFVNQPW 227

Query:   144 QVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSIIVH--GQNLDS 201
              +  L  L+KPFLK+KTR +I +HG NL+SL+  +  + LP E F G++  +  G    +
Sbjct:   228 YIHALYTLIKPFLKDKTRKRIFLHGNNLNSLHQLIHPEFLPSE-FGGTLPPYDMGTWART 286

Query:   202 LYGANRPSWPCYEKNA--GYRVKRPLERTEASCETSLKGRT 240
             L G +      Y   +     VK      E  C   L  R+
Sbjct:   287 LLGPDYSDENDYTHTSYNAMHVKHTSSNLERECSPKLMKRS 327

GO:0005215 "transporter activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0007040 "lysosome organization" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0030136 "clathrin-coated vesicle" evidence=ISS

UNIPROTKB|F1S2T8 CLVS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 50/108 (46%), Positives = 73/108 (67%)

Query:    89 LLVDTKIQYSGFVFLLDW-NQTSIYAS---PTLLRTMISGLQDCYPARFKAIHFINEPVQ 144
             ++ D ++Q +GFV ++DW N T   AS   P++LR  I GLQD +PARF  IHF+N+P  
Sbjct:   147 MIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRLAIEGLQDSFPARFGGIHFVNQPWY 206

Query:   145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSI 192
             +  L  +++PFLKEKTR +I +HG NL+SL+  +  +ILP E F G +
Sbjct:   207 IHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEILPSE-FGGML 253

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|Q5RCA6 CLVS1 "Clavesin-1" [Pongo abelii (taxid:9601)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 57/161 (35%), Positives = 89/161 (55%)

Query:    88 LLLVDTKIQYSGFVFLLDWNQTSI-YAS---PTLLRTMISGLQDCYPARFKAIHFINEPV 143
             +L+ D ++Q +GF+ ++DW+  S   AS   P++L+  I GLQD +PARF  +HF+N+P 
Sbjct:   168 VLIEDPELQINGFILIIDWSNFSFKQASKLTPSILKLAIEGLQDSFPARFGGVHFVNQPW 227

Query:   144 QVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSIIVH--GQNLDS 201
              +  L  L+KPFLK+KTR +I +HG NL+SL+  +  + LP E F G++  +  G    +
Sbjct:   228 YIHALYTLIKPFLKDKTRKRIFLHGNNLNSLHQLIHPEFLPSE-FGGTLPPYDMGTWART 286

Query:   202 LYGANRPSWPCYEKNA--GYRVKRPLERTEASCETSLKGRT 240
             L G +      Y   +     VK      E  C   L  R+
Sbjct:   287 LLGPDYSDENDYTHTSYNAMHVKHTSSNLERECSPKLMKRS 327

GO:0005768 "endosome" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0007040 "lysosome organization" evidence=ISS

GO:0030136 "clathrin-coated vesicle" evidence=ISS

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISS

UNIPROTKB|Q95KF7 CLVS2 "Clavesin-2" [Macaca fascicularis (taxid:9541)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 50/108 (46%), Positives = 73/108 (67%)

Query:    89 LLVDTKIQYSGFVFLLDW-NQTSIYAS---PTLLRTMISGLQDCYPARFKAIHFINEPVQ 144
             ++ D ++Q +GFV ++DW N T   AS   P++LR  I GLQD +PARF  IHF+N+P  
Sbjct:   147 MIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRLAIEGLQDSFPARFGGIHFVNQPWY 206

Query:   145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSI 192
             +  L  +++PFLKEKTR +I +HG NL+SL+  +  +ILP E F G +
Sbjct:   207 IHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEILPSE-FGGML 253

GO:0005768 "endosome" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0007040 "lysosome organization" evidence=ISS

GO:0030136 "clathrin-coated vesicle" evidence=ISS

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISS

RGD|1306801 Clvs2 "clavesin 2" [Rattus norvegicus (taxid:10116)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 50/108 (46%), Positives = 73/108 (67%)

Query:    89 LLVDTKIQYSGFVFLLDW-NQTSIYAS---PTLLRTMISGLQDCYPARFKAIHFINEPVQ 144
             ++ D ++Q +GFV ++DW N T   AS   P++LR  I GLQD +PARF  IHF+N+P  
Sbjct:   147 MIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRLAIEGLQDSFPARFGGIHFVNQPWY 206

Query:   145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSI 192
             +  L  +++PFLKEKTR +I +HG NL+SL+  +  +ILP E F G +
Sbjct:   207 IHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEILPSE-FGGML 253

GO:0005215 "transporter activity" evidence=IEA

GO:0005768 "endosome" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0007040 "lysosome organization" evidence=IMP

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	241
cd00170	157	cd00170, SEC14, Sec14p-like lipid-binding domain	2e-24
pfam00650	152	pfam00650, CRAL_TRIO, CRAL/TRIO domain	4e-18
smart00516	158	smart00516, SEC14, Domain in homologues of a S	6e-16
pfam13716	149	pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain	6e-06

>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain

 Score = 94.4 bits (235), Expect = 2e-24
 Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 3/94 (3%)

Query: 96  QYSGFVFLLDWNQTS---IYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALV 152
           Q  GFV ++D    S   +   P+LL+ ++  LQD YP R KA++ IN P    VL  +V
Sbjct: 60  QVEGFVVIIDLKGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIV 119

Query: 153 KPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIE 186
           KPFL EKTR KI+  G + + L  Y+ ++ LP E
Sbjct: 120 KPFLSEKTRKKIVFLGSDKEELLKYIDKEQLPEE 153

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 157

>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain

 Score = 78.1 bits (193), Expect = 4e-18
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 6/98 (6%)

Query: 99  GFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKP 154
           G   ++D    S+        + L+ ++  LQD YP R   I  +N P   +V+  L+KP
Sbjct: 56  GITVIIDMKGLSLSNMDKWPISFLKKILKILQDNYPERLGKILIVNAPWIFNVIWKLIKP 115

Query: 155 FLKEKTRDKIIVH-GQNLDSLYGYLPRDILPIEIFNGS 191
           FL  KTR+KI  H   NL+ L  Y+P + LP E + G+
Sbjct: 116 FLDPKTREKIHFHKNSNLEELLKYIPPEQLPKE-YGGT 152

Length = 152

>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S

 Score = 72.3 bits (178), Expect = 6e-16
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 6/93 (6%)

Query: 98  SGFVFLLD---WNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKP 154
            GF  + D    + ++   S  +LR ++  LQD YP R   ++ IN P    VL  ++KP
Sbjct: 62  EGFTVIFDLKGLSMSNPDLS--VLRKILKILQDHYPERLGKVYIINPPWFFRVLWKIIKP 119

Query: 155 FLKEKTRDKIIVHGQN-LDSLYGYLPRDILPIE 186
           FL EKTR+KI   G +  + L  Y+ ++ LP E
Sbjct: 120 FLDEKTREKIRFVGNDSKEELLEYIDKEQLPEE 152

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 158

>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 10/106 (9%)

Query: 88  LLLVDTKIQYSGFVFLLD-----WNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEP 142
           L ++  +++  GFV ++D      N+ S     + L+ +   L   +P   KA++ ++  
Sbjct: 39  LSILSEELKPKGFVVVIDHTGVTRNKPSW----SWLKKLYKLLPRAFPKNLKAVYIVHPS 94

Query: 143 VQVDVLLA-LVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEI 187
             +   L  L + F  +K   K +++  +L  L  Y+    LP+E+
Sbjct: 95  TFLKKFLKTLGRLFSSKKLFKKKVIYVSSLSELSEYIDPTQLPLEL 140

This family includes divergent members of the CRAL-TRIO domain family. This family includes ECM25 that contains a divergent CRAL-TRIO domain identified by Gallego and colleagues. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
KOG1470|consensus	324		100.0
KOG1471|consensus	317		100.0
PF00650	159	CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T	99.96
smart00516	158	SEC14 Domain in homologues of a S. cerevisiae phos	99.95
cd00170	157	SEC14 Sec14p-like lipid-binding domain. Found in s	99.94
PF13716	149	CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q	99.42
PF03765	55	CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPr	98.25
KOG4406|consensus	467		97.77

>KOG1470|consensus

Probab=100.00  E-value=2.4e-35  Score=256.62  Aligned_cols=180  Identities=20%  Similarity=0.216  Sum_probs=154.8

Q ss_pred             ccchhhhcCCCChhhHhhcCcCccccccc----c---------cccCCCcccccCCCCCCCCCCeEEEEEeccCCCCCCc
Q psy15467          3 SMGKKLRRDTIDQERPLRSLPVPAQLVES----P---------LLSGGHLQVSPTPDGLTPGGHQNPILRLCVSSRLEPN   69 (241)
Q Consensus         3 ~llRFLrArkfdv~kA~~~L~~~~~~~~~----~---------~l~~g~~~~l~~~~~~d~~G~~vii~r~~~~~~~~~~   69 (241)
                      ++|||||||+||+++|.+||..++.|+.+    .         -++.|..+.++    +|++||||+|+|+..+.+...+
T Consensus        51 cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~~~~Ev~~e~~tGK~yi~G----~D~~gRPVl~~~~~~~~qn~~t  126 (324)
T KOG1470|consen   51 CLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVIEADEVAAELETGKAYILG----HDKDGRPVLYLRPRPHRQNTKT  126 (324)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCccccCHHHHHHHhhcCcEEEec----ccCCCCeEEEEecCCCCCCCCC
Confidence            68999999999999999999999999754    1         34668888887    4589999999987754443332


Q ss_pred             hhhhccchhhhHHHHHhhhhhhccCCccccEEEEEeCCCCcc-ccCHHHHHHHHHHHHhhhhhhcceEEEEeCChHHHHH
Q psy15467         70 VDLRQSDATSDHDIRTSGLLLVDTKIQYSGFVFLLDWNQTSI-YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVL  148 (241)
Q Consensus        70 ~~~~~~~~~~~~~i~~~E~l~~~~~~~~~g~v~I~D~~g~s~-~~~~~~~k~~~~~~q~~yP~rl~~i~ivN~P~~~~~~  148 (241)
                      ...     ...+.+++||.++.....+++.+++++|++|+|+ +++...+|.++.++|+|||+||+..+++|+||+|+.+
T Consensus       127 ~~~-----~~r~~Vy~mE~Ai~~lp~~qe~~~~L~D~~~fs~sN~d~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~  201 (324)
T KOG1470|consen  127 QKE-----LERLLVYTLENAILFLPPGQEQFVWLFDLTGFSMSNPDIKFLKELLHILQDHYPERLGKALLVNAPWIFQPF  201 (324)
T ss_pred             HHH-----HHHHHHHHHHHHHHhCCCCcceEEEEEecccCcccCCCcHHHHHHHHHHHHhChHHhhhhhhcCChHHHHHH
Confidence            211     2345677899988877778899999999999998 6889999999999999999999999999999999999


Q ss_pred             HHHHhhhcChhhcCceEEeCCChHHHhccCCCCCCCcccCCCcc
Q psy15467        149 LALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSI  192 (241)
Q Consensus       149 ~~lik~fl~~k~~~ki~~~~~~~~~L~~~i~~~~LP~eyGG~~~  192 (241)
                      |+++|||++|+|++||.|+ .+.+.+.++||+++||..|||...
T Consensus       202 wkiikpflDp~t~~Kv~F~-~~~~~l~~~~d~~~l~s~~GG~~~  244 (324)
T KOG1470|consen  202 WKIIKPFLDPKTASKVKFV-EPKDDLSEYFDESQLPSLFGGKLL  244 (324)
T ss_pred             HHHhhhccChhhhceeEEe-cChhHHHhhCCccccchhhCCCcc
Confidence            9999999999999999999 467789999999999999999543

>KOG1471|consensus

Probab=100.00  E-value=1.1e-34  Score=257.21  Aligned_cols=191  Identities=29%  Similarity=0.341  Sum_probs=147.5

Q ss_pred             ccchhhhcCCCChhhHhhcCcCccccccc----ccccC----CCcc--cccCCCCCCCCCCeEEEEEeccCCCCCCchhh
Q psy15467          3 SMGKKLRRDTIDQERPLRSLPVPAQLVES----PLLSG----GHLQ--VSPTPDGLTPGGHQNPILRLCVSSRLEPNVDL   72 (241)
Q Consensus         3 ~llRFLrArkfdv~kA~~~L~~~~~~~~~----~~l~~----g~~~--~l~~~~~~d~~G~~vii~r~~~~~~~~~~~~~   72 (241)
                      +||||||||+||+++|.+||..+++|+..    +++..    ..+.  ......+.+++|+++.+-+.+..+.+..-...
T Consensus        47 ~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~  126 (317)
T KOG1471|consen   47 NLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFEDFEEDDELLKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRT  126 (317)
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhccccchhhhhhccccccccCCCCCEEEEeccCCCCcccceeec
Confidence            68999999999999999999887777643    23322    1111  11223458899999999999987765532211


Q ss_pred             hc---cchhhhH----HHHHhhhhhhccCCccccEEEEEeCCCCcc----ccCHHHHHHHHHHHHhhhhhhcceEEEEeC
Q psy15467         73 RQ---SDATSDH----DIRTSGLLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINE  141 (241)
Q Consensus        73 ~~---~~~~~~~----~i~~~E~l~~~~~~~~~g~v~I~D~~g~s~----~~~~~~~k~~~~~~q~~yP~rl~~i~ivN~  141 (241)
                      ..   .+.....    ....+|.+.+..+.+++|++.|+|++|+++    +..++.+++++.++|++||+|++++||||+
T Consensus       127 ~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~  206 (317)
T KOG1471|consen  127 GSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINA  206 (317)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcC
Confidence            00   0000000    111345555555678999999999999996    467889999999999999999999999999


Q ss_pred             ChHHHHHHHHHhhhcChhhcCceE-EeCCChHHHhccCCCCCCCcccCCCccc
Q psy15467        142 PVQVDVLLALVKPFLKEKTRDKII-VHGQNLDSLYGYLPRDILPIEIFNGSII  193 (241)
Q Consensus       142 P~~~~~~~~lik~fl~~k~~~ki~-~~~~~~~~L~~~i~~~~LP~eyGG~~~~  193 (241)
                      |++|+++|+++||||+++|++||+ +++++.++|.++||+++||.+|||++..
T Consensus       207 P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i~~~~LP~~yGG~~~~  259 (317)
T KOG1471|consen  207 PTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKYIPPEVLPEEYGGTCGD  259 (317)
T ss_pred             chhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhhCCHhhCccccCCCccc
Confidence            999999999999999999999999 6666778999999999999999997654

>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle

Probab=99.96  E-value=9.8e-30  Score=203.01  Aligned_cols=149  Identities=28%  Similarity=0.358  Sum_probs=111.5

Q ss_pred             cccCCCcccccCCCCCCCCCCeEEEEEeccCCCCCCchhhhccchhhhHHHHHhhhhhhc-cC-CccccEEEEEeCCCCc
Q psy15467         33 LLSGGHLQVSPTPDGLTPGGHQNPILRLCVSSRLEPNVDLRQSDATSDHDIRTSGLLLVD-TK-IQYSGFVFLLDWNQTS  110 (241)
Q Consensus        33 ~l~~g~~~~l~~~~~~d~~G~~vii~r~~~~~~~~~~~~~~~~~~~~~~~i~~~E~l~~~-~~-~~~~g~v~I~D~~g~s  110 (241)
                      +.+.|..+..+    .|++|++|+++|+++.++...+....     ....++++|.++.. ++ .+.+|+++|+|++|++
T Consensus         3 ~~~~~~~~~~g----~D~~gr~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~   73 (159)
T PF00650_consen    3 ILKSGPFYLHG----RDKDGRPVIYIRLGRFDPKKFSPEDV-----IRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFS   73 (159)
T ss_dssp             HHTTSCEEEEE----E-TTS-EEEEEEGTT--HHTS-HHHH-----HHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--
T ss_pred             HHCCeeEEECC----CCCCcCEEEEEEcccCCCCcCCHHHH-----HHHHHHHHHHHHhhhcccccceeEEEEEeCCCce
Confidence            34455555444    46899999999999877665543222     22345567776643 32 5899999999999999


Q ss_pred             c-ccC---HHHHHHHHHHHHhhhhhhcceEEEEeCChHHHHHHHHHhhhcChhhcCceEEeCC-Ch-HHHhccCCCCCCC
Q psy15467        111 I-YAS---PTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQ-NL-DSLYGYLPRDILP  184 (241)
Q Consensus       111 ~-~~~---~~~~k~~~~~~q~~yP~rl~~i~ivN~P~~~~~~~~lik~fl~~k~~~ki~~~~~-~~-~~L~~~i~~~~LP  184 (241)
                      + +++   .+.+|.++.++|++||+|++++|+||+|++++++|+++++||++++++||+++++ +. ++|.++||+++||
T Consensus        74 ~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~lP  153 (159)
T PF00650_consen   74 LSNFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQLP  153 (159)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGSB
T ss_pred             EeccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHCc
Confidence            7 455   8899999999999999999999999999999999999999999999999999953 44 6899999999999


Q ss_pred             cccCCC
Q psy15467        185 IEIFNG  190 (241)
Q Consensus       185 ~eyGG~  190 (241)
                      .+|||+
T Consensus       154 ~~~GG~  159 (159)
T PF00650_consen  154 VEYGGT  159 (159)
T ss_dssp             GGGTSS
T ss_pred             hhcCCC
Confidence            999995

Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....

>smart00516 SEC14 Domain in homologues of a S

Probab=99.95  E-value=4.7e-28  Score=193.11  Aligned_cols=140  Identities=27%  Similarity=0.372  Sum_probs=121.6

Q ss_pred             CCCCCCCeEEEEEeccCCCCCCchhhhccchhhhHHHHHhhhhhhc--cCCccccEEEEEeCCCCcc-ccCHHHHHHHHH
Q psy15467         47 GLTPGGHQNPILRLCVSSRLEPNVDLRQSDATSDHDIRTSGLLLVD--TKIQYSGFVFLLDWNQTSI-YASPTLLRTMIS  123 (241)
Q Consensus        47 ~~d~~G~~vii~r~~~~~~~~~~~~~~~~~~~~~~~i~~~E~l~~~--~~~~~~g~v~I~D~~g~s~-~~~~~~~k~~~~  123 (241)
                      |.|++||+|++++++..++...+....     +...+.++|.++.+  +..+++|+++|+|++|+++ +++++.+|+++.
T Consensus        14 g~D~~GrpV~~~~~~~~~~~~~~~~~~-----~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~lk~~~~   88 (158)
T smart00516       14 GYDKDGRPVLIFRAGRFDLKSVTLEEL-----LRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSNPDLSVLRKILK   88 (158)
T ss_pred             CCCCCcCEEEEEeccccccCcCCHHHH-----HHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCcccccHHHHHHHHH
Confidence            478999999999999877655544332     23345567777765  5678999999999999997 688999999999


Q ss_pred             HHHhhhhhhcceEEEEeCChHHHHHHHHHhhhcChhhcCceEEeCCC-hHHHhccCCCCCCCcccCCCc
Q psy15467        124 GLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQN-LDSLYGYLPRDILPIEIFNGS  191 (241)
Q Consensus       124 ~~q~~yP~rl~~i~ivN~P~~~~~~~~lik~fl~~k~~~ki~~~~~~-~~~L~~~i~~~~LP~eyGG~~  191 (241)
                      .+|++||+|++++||||+|+++.++|+++++|+++++++||++++++ .++|.++||+++||.+|||++
T Consensus        89 ~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~lP~~~GG~~  157 (158)
T smart00516       89 ILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQLPEELGGTL  157 (158)
T ss_pred             HHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhCcHhhCCCC
Confidence            99999999999999999999999999999999999999999999642 689999999999999999974

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>cd00170 SEC14 Sec14p-like lipid-binding domain

Probab=99.94  E-value=2.5e-26  Score=181.20  Aligned_cols=139  Identities=32%  Similarity=0.444  Sum_probs=116.0

Q ss_pred             CCCCCCeEEEEEeccCCCCCCchhhhccchhhhHHHHHhhhhhhccCCccccEEEEEeCCCCcc-cc--CHHHHHHHHHH
Q psy15467         48 LTPGGHQNPILRLCVSSRLEPNVDLRQSDATSDHDIRTSGLLLVDTKIQYSGFVFLLDWNQTSI-YA--SPTLLRTMISG  124 (241)
Q Consensus        48 ~d~~G~~vii~r~~~~~~~~~~~~~~~~~~~~~~~i~~~E~l~~~~~~~~~g~v~I~D~~g~s~-~~--~~~~~k~~~~~  124 (241)
                      .|++|++|++++++..+.......    ...+...+..+|.++.++..+.+|+++|+|++|+++ ++  +++.+|+++..
T Consensus        16 ~D~~gr~V~~~~~~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~k~~~~~   91 (157)
T cd00170          16 RDKEGRPVLIIRAGNKDLSKSLDS----EELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLLPDPSLLKKILKI   91 (157)
T ss_pred             CCCCcCEEEEEecCCcchhhcCCH----HHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCChhccchhHHHHHHHHHH
Confidence            579999999999995333222110    112334455678877776666689999999999997 44  77889999999


Q ss_pred             HHhhhhhhcceEEEEeCChHHHHHHHHHhhhcChhhcCceEEeCCChHHHhccCCCCCCCcccCCC
Q psy15467        125 LQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNG  190 (241)
Q Consensus       125 ~q~~yP~rl~~i~ivN~P~~~~~~~~lik~fl~~k~~~ki~~~~~~~~~L~~~i~~~~LP~eyGG~  190 (241)
                      +|++||+|++++|+||+|+++.++|+++++|+++++++||++++++.++|.++||+++||.+|||+
T Consensus        92 ~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~L~~~i~~~~Lp~~~GG~  157 (157)
T cd00170          92 LQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSDKEELLKYIDKEQLPEEYGGT  157 (157)
T ss_pred             HHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCCHHHHHhhCChhhCcHhhCCC
Confidence            999999999999999999999999999999999999999999963389999999999999999995

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A

Probab=99.42  E-value=2.4e-13  Score=107.74  Aligned_cols=133  Identities=16%  Similarity=0.183  Sum_probs=86.7

Q ss_pred             CCCCCCCCeEEEEEeccCCCCCCchhhhccchhhhHHHHHhhhhhhccCCccccEEEEEeCCCCcc--ccCHHHHHHHHH
Q psy15467         46 DGLTPGGHQNPILRLCVSSRLEPNVDLRQSDATSDHDIRTSGLLLVDTKIQYSGFVFLLDWNQTSI--YASPTLLRTMIS  123 (241)
Q Consensus        46 ~~~d~~G~~vii~r~~~~~~~~~~~~~~~~~~~~~~~i~~~E~l~~~~~~~~~g~v~I~D~~g~s~--~~~~~~~k~~~~  123 (241)
                      +|.|++|+||+++..... +...+..     ..+.+.+.   .+.+  +....++++|+|++|++.  ..+...++++..
T Consensus         7 gG~d~~g~pV~~~~~~~~-~~~~~~~-----~ll~yl~~---~l~~--~~~~~~f~vVid~~~~~~~~~~~~~~l~~~~~   75 (149)
T PF13716_consen    7 GGRDREGRPVVVFIASRL-PSSDDLE-----RLLLYLLS---TLSE--EVVDKPFSVVIDHTGFSRSSEPSLSWLKQLYK   75 (149)
T ss_dssp             EEEBTTS-EEEEEEGGG--C-TTHHH-----HHHHHHHH---HH-T--TTTTS-EEEEEE-TT--GGG---HHHHHHTTT
T ss_pred             cccCCCcCEEEEEECCcC-cchhhHH-----HHHHHHHH---hhhH--HhcCCCEEEEEEcCCCccccCCchHHHHHHHH
Confidence            457899999999987765 2221110     01222222   2211  134577999999999986  356778999999


Q ss_pred             HHHhhhhhhcceEEEEeCChHHHHHH-HHHhhhcChhh-cCceEEeCCChHHHhccCCCCCCCcccCCC
Q psy15467        124 GLQDCYPARFKAIHFINEPVQVDVLL-ALVKPFLKEKT-RDKIIVHGQNLDSLYGYLPRDILPIEIFNG  190 (241)
Q Consensus       124 ~~q~~yP~rl~~i~ivN~P~~~~~~~-~lik~fl~~k~-~~ki~~~~~~~~~L~~~i~~~~LP~eyGG~  190 (241)
                      .++..|+.+++.+++||+.+++..++ .+.+++.+++. ..||.++ ++.++|.++||+++||++.||.
T Consensus        76 ~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~-~sl~~L~~~i~~~qL~~~lp~~  143 (149)
T PF13716_consen   76 LLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYV-SSLSELSKHIDPSQLPESLPGV  143 (149)
T ss_dssp             SS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEE-SSTCGGGGTSGGGG------HH
T ss_pred             HHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEE-CCHHHHHhhCCHHHhcccCCCE
Confidence            99999999999999999999999999 66678889998 9999998 5899999999999999999963

>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle

Probab=98.25  E-value=1.5e-07  Score=62.12  Aligned_cols=21  Identities=24%  Similarity=0.325  Sum_probs=18.7

Q ss_pred             ccchhhhcCCCChhhHhhcCc
Q psy15467          3 SMGKKLRRDTIDQERPLRSLP   23 (241)
Q Consensus         3 ~llRFLrArkfdv~kA~~~L~   23 (241)
                      +||||||||+||+++|++||.
T Consensus        33 ~llRFLRARkf~v~~A~~mL~   53 (55)
T PF03765_consen   33 FLLRFLRARKFDVEKAFKMLK   53 (55)
T ss_dssp             HHHHHHHHTTT-HHHHHHHHH
T ss_pred             HHHHHHHHccCCHHHHHHHHH
Confidence            689999999999999999984

Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....

>KOG4406|consensus

Probab=97.77  E-value=0.00019  Score=64.88  Aligned_cols=130  Identities=18%  Similarity=0.192  Sum_probs=85.8

Q ss_pred             CCcccccCCCCCCCCCCeEEEEEeccCCCCCCchhhhccchhhhHHHHHhhhhhhccCCccccEEEEEeCCCCccc--cC
Q psy15467         37 GHLQVSPTPDGLTPGGHQNPILRLCVSSRLEPNVDLRQSDATSDHDIRTSGLLLVDTKIQYSGFVFLLDWNQTSIY--AS  114 (241)
Q Consensus        37 g~~~~l~~~~~~d~~G~~vii~r~~~~~~~~~~~~~~~~~~~~~~~i~~~E~l~~~~~~~~~g~v~I~D~~g~s~~--~~  114 (241)
                      +.+.+.+  ++.|++|++|+++-..+..... ..+. .+  .....++.++..++.      .++.+.=-.|....  -.
T Consensus        80 ei~qvi~--~~~D~~gr~iivv~a~rlp~~~-eld~-~~--li~~~v~~id~~Ve~------DYt~vYfh~gl~s~nkp~  147 (467)
T KOG4406|consen   80 EILQVIG--DAKDKQGRKIIVVYACRLPSSS-ELDD-IR--LISYLVYTIDKYVEN------DYTLVYFHHGLPSDNKPY  147 (467)
T ss_pred             heeeecc--CcccccCCeeEEEEEecCCchh-hhhh-HH--HHHHHHHHHHHHHhc------cceeeehhcCCcccccch
Confidence            4444443  2358999999988877653321 1111 11  122334444554443      25566555666542  23


Q ss_pred             HHHHHHHHHHHHhhhhhhcceEEEEeCChHHHHHHHHHhhhcChhhcCceEEeCCChHHHhccCC
Q psy15467        115 PTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLP  179 (241)
Q Consensus       115 ~~~~k~~~~~~q~~yP~rl~~i~ivN~P~~~~~~~~lik~fl~~k~~~ki~~~~~~~~~L~~~i~  179 (241)
                      ...+.+...-+-.+|---++++|+|++-|+..++|+++|||++.|-.+||+-. +..++|.+++.
T Consensus       148 l~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~-n~lseL~~~l~  211 (467)
T KOG4406|consen  148 LQLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYF-NSLSELFEALK  211 (467)
T ss_pred             HHHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEe-ehHHHHHHhhh
Confidence            34444455555566888899999999999999999999999999999999987 46889988765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	241
3hy5_A	316	Crystal Structure Of Cralbp Length = 316		5e-15
3hx3_A	316	Crystal Structure Of Cralbp Mutant R234w Length = 3		4e-13
1oip_A	278	The Molecular Basis Of Vitamin E Retention: Structu		1e-11
1r5l_A	262	Crystal Structure Of Human Alpha-tocopherol Transfe		6e-11
3q8g_A	320	Resurrection Of A Functional Phosphatidylinositol T		2e-04
3b74_A	320	Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Co		2e-04

>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp Length = 316

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 5/108 (4%)
Query: 89  LLVDTKIQYSGFVFLLDWNQTSIYASPTL----LRTMISGLQDCYPARFKAIHFINEPVQ 144
           LL + + Q +GF  + ++   ++  + +L    LR M+  LQD +PARFKAIHFI++P  
Sbjct: 186 LLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIHFIHQPWY 245
Query: 145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSI 192
                 +VKPFLK K  +++ VHG +L   Y  +  +ILP + F G++
Sbjct: 246 FTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSD-FGGTL 292

>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w Length = 316

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 89  LLVDTKIQYSGFVFLLDWNQTSIYASPTL----LRTMISGLQDCYPARFKAIHFINEPVQ 144
           LL + + Q +GF  + ++   +   + +L    LR  +  LQD +PA FKAIHFI++P  
Sbjct: 186 LLENEETQINGFCIIENFKGFTXQQAASLRTSDLRKXVDXLQDSFPAWFKAIHFIHQPWY 245
Query: 145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSI 192
                 +VKPFLK K  +++ VHG +L   Y  +  +ILP + F G++
Sbjct: 246 FTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSD-FGGTL 292

>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of Human Alpha-tocopherol Transfer Protein Length = 278

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 63/107 (58%), Gaps = 6/107 (5%)
Query: 85  TSGLLLVDTKIQYSGFVFLLD---WNQTSIYA-SPTLLRTMISGLQDCYPARFKAIHFIN 140
           TS L++ + + Q +G   + D   W  +  +  +P++ + + + L D +P + + IH IN
Sbjct: 139 TSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLIN 198
Query: 141 EPVQVDVLLALVKPFLKEKTRDKIIVHGQNL-DSLYGYLPRDILPIE 186
           EPV    + +++KPFL EK +++I +HG N   SL  + P DILP+E
Sbjct: 199 EPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLE 244

>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer Protein Bound To Its Ligand Length = 262

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 6/107 (5%)
Query: 85  TSGLLLVDTKIQYSGFVFLLD---WNQTSIYA-SPTLLRTMISGLQDCYPARFKAIHFIN 140
           TS L++ + + Q +G   + D   W  +  +  +P++ + + + L D +P + + IH IN
Sbjct: 123 TSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLIN 182
Query: 141 EPVQVDVLLALVKPFLKEKTRDKIIVHGQNL-DSLYGYLPRDILPIE 186
           EPV    + + +KPFL EK +++I  HG N   SL  + P DILP+E
Sbjct: 183 EPVIFHAVFSXIKPFLTEKIKERIHXHGNNYKQSLLQHFP-DILPLE 228

>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer Protein From A Pseudo-Sec14 Scaffold By Directed Evolution Length = 320

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 126 QDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNL-DSLYGYLPRDILP 184
           Q+ YP R    + I+ P     +  +VKPFL   T  KI + G +    L   +P + LP
Sbjct: 214 QNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLP 273
Query: 185 IEIFNGSIIVHGQNLDSLYGANRPSW 210
           ++ + G+ ++H  N D  Y ++   W
Sbjct: 274 VK-YGGTSVLHNPN-DKFYYSDIGPW 297

>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex With Phosphatidylethanolamine Length = 320

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 126 QDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNL-DSLYGYLPRDILP 184
           Q+ YP R    + I+ P     +  +VKPFL   T  KI + G +    L   +P + LP
Sbjct: 214 QNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLP 273
Query: 185 IEIFNGSIIVHGQNLDSLYGANRPSW 210
           ++ + G+ ++H  N D  Y ++   W
Sbjct: 274 VK-YGGTSVLHNPN-DKFYYSDIGPW 297

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	2e-31
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	1e-28
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	4e-16
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	6e-13
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	4e-12

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316

 Score =  116 bits (293), Expect = 2e-31
 Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 11/136 (8%)

Query: 88  LLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPV 143
            LL + + Q +GF  + ++   ++        + LR M+  LQD +PA FKAIHFI++P 
Sbjct: 185 KLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPW 244

Query: 144 QVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSI--IVHGQNLDS 201
                  +VKPFLK K  +++ VHG +L   Y  +  +ILP + F G++         + 
Sbjct: 245 YFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSD-FGGTLPKYDGKAVAEQ 303

Query: 202 LYGANRPSWPCYEKNA 217
           L+G         E  A
Sbjct: 304 LFG----PQAQAENTA 315

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262

 Score =  107 bits (270), Expect = 1e-28
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 4/103 (3%)

Query: 88  LLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPV 143
           L++ + + Q +G   + D            +P++ + + + L D +P + + IH INEPV
Sbjct: 126 LIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPV 185

Query: 144 QVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIE 186
               + +++KPFL EK +++I +HG N          DILP+E
Sbjct: 186 IFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFPDILPLE 228

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403

 Score = 75.8 bits (186), Expect = 4e-16
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 98  SGFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVK 153
                + D     +      +       +   ++ YP   K +  +  P    V   L+K
Sbjct: 147 ETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIK 206

Query: 154 PFLKEKTRDKIIVHG-QNLDSLYGYLPRDILPIEIFNGS 191
           PFL E TR KI+V G    + L  ++  D +P+E + G+
Sbjct: 207 PFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVE-YGGT 244

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296

 Score = 65.9 bits (161), Expect = 6e-13
 Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 9/128 (7%)

Query: 98  SGFVFLLD---WNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKP 154
                ++D    + +S Y+  + +R      Q+ YP R    + IN P        L KP
Sbjct: 168 ETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKP 227

Query: 155 FLKEKTRDKIIVHGQN-LDSLYGYLPRDILPIEIFNGSI---IVHGQNLDSLYGANR-PS 209
           FL   T  KI + G +    L   +P + LP   F G        G    S  G  R P 
Sbjct: 228 FLDPVTVSKIFILGSSYQKELLKQIPAENLP-VKFGGKSEVDESKGGLYLSDIGPWRDPK 286

Query: 210 WPCYEKNA 217
           +   E  A
Sbjct: 287 YIGPEGEA 294

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320

 Score = 63.7 bits (155), Expect = 4e-12
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 5/98 (5%)

Query: 98  SGFVFLLD---WNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKP 154
                +LD    + ++ Y   + ++ +    Q+ YP R    + I+ P     +  +VKP
Sbjct: 183 ETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKP 242

Query: 155 FLKEKTRDKIIVHGQNLDS-LYGYLPRDILPIEIFNGS 191
           FL   T  KI + G +    L   +P + LP   + G+
Sbjct: 243 FLDPVTVSKIFILGSSYKKELLKQIPIENLP-VKYGGT 279

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	100.0
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	100.0
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	100.0
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	100.0
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	100.0
3pg7_A	256	Neurofibromin; SEC lipid binding domain, PH domain	99.07
3peg_A	290	Neurofibromin; SEC14 domain, pleckstrin homology d	98.85

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*

Probab=100.00  E-value=1.6e-43  Score=303.95  Aligned_cols=200  Identities=25%  Similarity=0.335  Sum_probs=169.7

Q ss_pred             ccchhhhcCCCChhhHhhcCcCccccccc--------------ccccCCCcccccCCCCCCCCCCeEEEEEeccCCCCCC
Q psy15467          3 SMGKKLRRDTIDQERPLRSLPVPAQLVES--------------PLLSGGHLQVSPTPDGLTPGGHQNPILRLCVSSRLEP   68 (241)
Q Consensus         3 ~llRFLrArkfdv~kA~~~L~~~~~~~~~--------------~~l~~g~~~~l~~~~~~d~~G~~vii~r~~~~~~~~~   68 (241)
                      .|+||||||+||+++|.+||+++.+|+.+              +.++.|...+++   |.|++||||++++++..++..+
T Consensus        35 ~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~~~~~~~~~~g~~~~l~---g~D~~GrpV~i~~~~~~d~~~~  111 (262)
T 1r5l_A           35 FLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLR---SRDPTGSKVLIYRIAHWDPKVF  111 (262)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCGGGTHHHHHTTCEEECS---SCCTTCCEEEEEEGGGCCTTTS
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCChHHHHHHHHcCCccCCC---CcCCCCCEEEEEeccccCcccC
Confidence            68999999999999999999888888642              122446554443   3679999999999999887766


Q ss_pred             chhhhccchhhhHHHHHhhhhhhccCCccccEEEEEeCCCCcc----ccCHHHHHHHHHHHHhhhhhhcceEEEEeCChH
Q psy15467         69 NVDLRQSDATSDHDIRTSGLLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPVQ  144 (241)
Q Consensus        69 ~~~~~~~~~~~~~~i~~~E~l~~~~~~~~~g~v~I~D~~g~s~----~~~~~~~k~~~~~~q~~yP~rl~~i~ivN~P~~  144 (241)
                      +....+     ...+.++|.++.+++.+++|+++|+|++|+|+    +++++.+|.++.++|++||+|++++||||+|++
T Consensus       112 ~~~~~~-----r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~  186 (262)
T 1r5l_A          112 TAYDVF-----RVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVI  186 (262)
T ss_dssp             CHHHHH-----HHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGG
T ss_pred             CHHHHH-----HHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHH
Confidence            543322     23345678777776678899999999999996    358899999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcChhhcCceEEeCCCh-HHHhccCCCCCCCcccCCC--ccccchhhHHHHhhhcCCCcc
Q psy15467        145 VDVLLALVKPFLKEKTRDKIIVHGQNL-DSLYGYLPRDILPIEIFNG--SIIVHGQNLDSLYGANRPSWP  211 (241)
Q Consensus       145 ~~~~~~lik~fl~~k~~~ki~~~~~~~-~~L~~~i~~~~LP~eyGG~--~~~~~~~~~~~~~~~~~~~~~  211 (241)
                      |+++|+++||||+++|++||+||+++. ++|.++|| ++||++|||+  ++.++++.|.+.+.++++||.
T Consensus       187 f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~~yGG~~~~~~~~~~~w~~~l~~~~~~~~  255 (262)
T 1r5l_A          187 FHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLEYGGEEFSMEDICQEWTNFIMKSEDYLS  255 (262)
T ss_dssp             GHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCGGGTCSSCCHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcHhhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999997664 79999999 9999999996  567888999999999999995

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*

Probab=100.00  E-value=3.9e-42  Score=303.99  Aligned_cols=193  Identities=23%  Similarity=0.300  Sum_probs=165.5

Q ss_pred             ccchhhhcCCCChhhHhhcCcCccccccc--------------ccccCCCcccccCCCCCCCCCCeEEEEEeccCCCCCC
Q psy15467          3 SMGKKLRRDTIDQERPLRSLPVPAQLVES--------------PLLSGGHLQVSPTPDGLTPGGHQNPILRLCVSSRLEP   68 (241)
Q Consensus         3 ~llRFLrArkfdv~kA~~~L~~~~~~~~~--------------~~l~~g~~~~l~~~~~~d~~G~~vii~r~~~~~~~~~   68 (241)
                      +||||||||+||+++|.+||.++..|+..              ++++.|.++.++.   .|++||||++++++.+++.+.
T Consensus        94 ~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~~~~~~~~~~i~~~l~~g~~~~l~g---~Dk~GrpVii~r~g~~d~~~~  170 (316)
T 3hx3_A           94 FFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSS---RDKYGRVVMLFNIENWQSQEI  170 (316)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGGGTTTCCHHHHHHHHHTTSSEECSS---CCTTSCEEEEEECTTCCTTTS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCchhhcCCCHHHHHHHHHcCCccccCC---CCCCCCEEEEEecccCCCCCC
Confidence            68999999999999999999887777542              2356677766553   579999999999999887776


Q ss_pred             chhhhccchhhhHHHHHhhhhhhccCCccccEEEEEeCCCCcc----ccCHHHHHHHHHHHHhhhhhhcceEEEEeCChH
Q psy15467         69 NVDLRQSDATSDHDIRTSGLLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPVQ  144 (241)
Q Consensus        69 ~~~~~~~~~~~~~~i~~~E~l~~~~~~~~~g~v~I~D~~g~s~----~~~~~~~k~~~~~~q~~yP~rl~~i~ivN~P~~  144 (241)
                      +....+     ...++++|.++.+++.+++|+++|+|++|+|+    +++++.+|+++.++|++||+|++++||||+|++
T Consensus       171 ~~~~~~-----r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~  245 (316)
T 3hx3_A          171 TFDEIL-----QAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWY  245 (316)
T ss_dssp             CHHHHH-----HHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTT
T ss_pred             CHHHHH-----HHHHHHHHHHHhcccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHH
Confidence            544332     23455678888777778999999999999997    378999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcChhhcCceEEeCCChHHHhccCCCCCCCcccCCCccccchhhHHHHh
Q psy15467        145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSIIVHGQNLDSLY  203 (241)
Q Consensus       145 ~~~~~~lik~fl~~k~~~ki~~~~~~~~~L~~~i~~~~LP~eyGG~~~~~~~~~~~~~~  203 (241)
                      |+++|+++||||+++|++||+|||+++++|.++||+++||++|||++-...++.|.+.+
T Consensus       246 f~~i~~ivkpfl~~kt~~KI~~~~~~~~~L~~~I~~~~LP~eyGG~~~~~d~~~~~~~l  304 (316)
T 3hx3_A          246 FTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGGTLPKYDGKAVAEQL  304 (316)
T ss_dssp             HHHHHHHHGGGCCHHHHTTEEEEETCCHHHHHHSCGGGSBGGGTSSBCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHhhhheEEeCCCHHHHHhhCCHhhCcHhhCCCCCCcChhHHHHHH
Confidence            99999999999999999999999878899999999999999999987766677777665

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1

Probab=100.00  E-value=1.1e-37  Score=272.76  Aligned_cols=189  Identities=18%  Similarity=0.164  Sum_probs=143.1

Q ss_pred             ccchhhhcCCCChhhHhhcCcCccccccc----ccccCC---------CcccccCCCCCCCCCCeEEEEEeccCCCCCCc
Q psy15467          3 SMGKKLRRDTIDQERPLRSLPVPAQLVES----PLLSGG---------HLQVSPTPDGLTPGGHQNPILRLCVSSRLEPN   69 (241)
Q Consensus         3 ~llRFLrArkfdv~kA~~~L~~~~~~~~~----~~l~~g---------~~~~l~~~~~~d~~G~~vii~r~~~~~~~~~~   69 (241)
                      +||||||||+||+++|.+||.++++|+.+    ++++..         ..++... .|.|++||+|++++++..++....
T Consensus        54 ~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~g~Dk~GrpV~i~~~g~~d~~~~~  132 (296)
T 1aua_A           54 TLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYY-HKTDKDGRPVYFEELGAVNLHEMN  132 (296)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHHGGGSCCEE-EEECTTSCEEEEECGGGCCHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHHHHhCCcee-cccCCCCCEEEEEeeccCChHHhh
Confidence            68999999999999999999988888753    222110         1111111 247899999999999987643210


Q ss_pred             hhhhccchhhhHHHHHhhhhhhc--------cCCccccEEEEEeCCCCcc-ccC--HHHHHHHHHHHHhhhhhhcceEEE
Q psy15467         70 VDLRQSDATSDHDIRTSGLLLVD--------TKIQYSGFVFLLDWNQTSI-YAS--PTLLRTMISGLQDCYPARFKAIHF  138 (241)
Q Consensus        70 ~~~~~~~~~~~~~i~~~E~l~~~--------~~~~~~g~v~I~D~~g~s~-~~~--~~~~k~~~~~~q~~yP~rl~~i~i  138 (241)
                      ...... -.+...++.+|.+++.        ...+++|+++|+|++|+|+ +++  ++.+|.++.++|++||+|++++||
T Consensus       133 ~~~~~~-~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~i  211 (296)
T 1aua_A          133 KVTSEE-RMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYI  211 (296)
T ss_dssp             TTCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             ccCCHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEE
Confidence            000000 0122234455654432        1235789999999999997 444  678999999999999999999999


Q ss_pred             EeCChHHHHHHHHHhhhcChhhcCceEEeCCCh-HHHhccCCCCCCCcccCCCccc
Q psy15467        139 INEPVQVDVLLALVKPFLKEKTRDKIIVHGQNL-DSLYGYLPRDILPIEIFNGSII  193 (241)
Q Consensus       139 vN~P~~~~~~~~lik~fl~~k~~~ki~~~~~~~-~~L~~~i~~~~LP~eyGG~~~~  193 (241)
                      ||+|++|+++|+++||||+++|++||+||++++ ++|.++||+++||++|||++..
T Consensus       212 iN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~  267 (296)
T 1aua_A          212 INAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGGKSEV  267 (296)
T ss_dssp             ESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSBGGGTSCBCC
T ss_pred             ECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCcHHhCCCCCC
Confidence            999999999999999999999999999997654 6899999999999999997543

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=100.00  E-value=8.7e-37  Score=277.78  Aligned_cols=186  Identities=18%  Similarity=0.208  Sum_probs=146.7

Q ss_pred             ccchhhhcCCCChhhHhhcCcCccccccc----ccccCCC------cccccCCCCCCCCCCeEEEEEeccCCCCC----C
Q psy15467          3 SMGKKLRRDTIDQERPLRSLPVPAQLVES----PLLSGGH------LQVSPTPDGLTPGGHQNPILRLCVSSRLE----P   68 (241)
Q Consensus         3 ~llRFLrArkfdv~kA~~~L~~~~~~~~~----~~l~~g~------~~~l~~~~~~d~~G~~vii~r~~~~~~~~----~   68 (241)
                      .||||||||+||+++|.+||+++++|+++    ++++...      .+.... .|.|++||||++++++..++..    .
T Consensus        37 ~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~~~-~g~Dk~GrpV~~~~~g~~d~~~l~~~~  115 (403)
T 1olm_A           37 FLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGM-CGYDLDGCPVWYDIIGPLDAKGLLFSA  115 (403)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGSCCCHHHHHHCCBEE-EEECTTSCEEEEEECTTCCHHHHHTTS
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHhCCcee-eccCCCcCEEEEEecCCCChHHhhccC
Confidence            58999999999999999999998888763    3332100      001111 2478999999999999876542    2


Q ss_pred             chhhhccchhhhHHHHHhhhhhhccCC-------ccccEEEEEeCCCCcc-cc---CHHHHHHHHHHHHhhhhhhcceEE
Q psy15467         69 NVDLRQSDATSDHDIRTSGLLLVDTKI-------QYSGFVFLLDWNQTSI-YA---SPTLLRTMISGLQDCYPARFKAIH  137 (241)
Q Consensus        69 ~~~~~~~~~~~~~~i~~~E~l~~~~~~-------~~~g~v~I~D~~g~s~-~~---~~~~~k~~~~~~q~~yP~rl~~i~  137 (241)
                      +...     .+.+.++++|.++.....       +++|+++|+|++|+++ ++   .++.+|.++.++|++||+|++++|
T Consensus       116 ~~~~-----~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~  190 (403)
T 1olm_A          116 SKQD-----LLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLF  190 (403)
T ss_dssp             CHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred             CHHH-----HHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEE
Confidence            2222     223345566776654332       4789999999999997 34   456789999999999999999999


Q ss_pred             EEeCChHHHHHHHHHhhhcChhhcCceEEeCCCh-HHHhccCCCCCCCcccCCCcccc
Q psy15467        138 FINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNL-DSLYGYLPRDILPIEIFNGSIIV  194 (241)
Q Consensus       138 ivN~P~~~~~~~~lik~fl~~k~~~ki~~~~~~~-~~L~~~i~~~~LP~eyGG~~~~~  194 (241)
                      |||+|++|.++|+++||||+++|++||+||++++ ++|.++||+++||++|||++...
T Consensus       191 iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~LP~~yGG~~~~~  248 (403)
T 1olm_A          191 VVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGTMTDP  248 (403)
T ss_dssp             EESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSBGGGTSSBCCT
T ss_pred             EEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhCchhhCCCcCCC
Confidence            9999999999999999999999999999997665 58999999999999999976544

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*

Probab=100.00  E-value=2.7e-36  Score=267.05  Aligned_cols=187  Identities=17%  Similarity=0.204  Sum_probs=141.5

Q ss_pred             ccchhhhcCCCChhhHhhcCcCccccccc----ccc-----------------cCCCcccccCCCCCCCCCCeEEEEEec
Q psy15467          3 SMGKKLRRDTIDQERPLRSLPVPAQLVES----PLL-----------------SGGHLQVSPTPDGLTPGGHQNPILRLC   61 (241)
Q Consensus         3 ~llRFLrArkfdv~kA~~~L~~~~~~~~~----~~l-----------------~~g~~~~l~~~~~~d~~G~~vii~r~~   61 (241)
                      +||||||||+||+++|.+||+++++|+++    +++                 .......+   .|.|++||||+++|++
T Consensus        63 ~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e~~~~~~~~~~~~---~g~Dk~GRpV~i~r~g  139 (320)
T 3q8g_A           63 TLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYY---HHVDKDGRPLYFAELG  139 (320)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHHHHHHHTTSCEEE---EEECTTCCEEEEEECT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchhHHHHHHHhCCcee---cCCCCCcCEEEEEecc
Confidence            68999999999999999999988888753    121                 11111111   2468999999999999


Q ss_pred             cCCCCCCchhhhccchhhhHHHHHhhhhhhc--------cCCccccEEEEEeCCCCcc-ccC--HHHHHHHHHHHHhhhh
Q psy15467         62 VSSRLEPNVDLRQSDATSDHDIRTSGLLLVD--------TKIQYSGFVFLLDWNQTSI-YAS--PTLLRTMISGLQDCYP  130 (241)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~i~~~E~l~~~--------~~~~~~g~v~I~D~~g~s~-~~~--~~~~k~~~~~~q~~yP  130 (241)
                      ..++.+........ -.+...++.+|.+++.        ....++++++|+|++|+|+ ++.  ++.+|.++.++|++||
T Consensus       140 ~~d~~~l~~~~~~~-~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YP  218 (320)
T 3q8g_A          140 GINLKKMYKITTEK-QMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYP  218 (320)
T ss_dssp             TCCHHHHHHHCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHTHHHHHHHHHHHHHHST
T ss_pred             ccCHHHhhccCCHH-HHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHhhCc
Confidence            86654320000000 0122334455655432        1113567899999999997 333  6789999999999999


Q ss_pred             hhcceEEEEeCChHHHHHHHHHhhhcChhhcCceEEeCCCh-HHHhccCCCCCCCcccCCCccc
Q psy15467        131 ARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNL-DSLYGYLPRDILPIEIFNGSII  193 (241)
Q Consensus       131 ~rl~~i~ivN~P~~~~~~~~lik~fl~~k~~~ki~~~~~~~-~~L~~~i~~~~LP~eyGG~~~~  193 (241)
                      +|++++||||+|++|+++|+++||||+++|++||+|++++. ++|.++||+++||++|||++..
T Consensus       219 erl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~  282 (320)
T 3q8g_A          219 ERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYGGTSVL  282 (320)
T ss_dssp             TCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSCGGGSBGGGTSCBCC
T ss_pred             hhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCChhhCChhhCCCCCC
Confidence            99999999999999999999999999999999999998664 7999999999999999997543

>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*

Probab=99.07  E-value=5.1e-10  Score=95.51  Aligned_cols=125  Identities=11%  Similarity=-0.020  Sum_probs=95.4

Q ss_pred             CCCCCCeEEEEEeccCCCCCCchhhhccchhhhHHHHHhhhhhhccCCccccEEEEEeCCCCcc--ccCHHHHHHHHHHH
Q psy15467         48 LTPGGHQNPILRLCVSSRLEPNVDLRQSDATSDHDIRTSGLLLVDTKIQYSGFVFLLDWNQTSI--YASPTLLRTMISGL  125 (241)
Q Consensus        48 ~d~~G~~vii~r~~~~~~~~~~~~~~~~~~~~~~~i~~~E~l~~~~~~~~~g~v~I~D~~g~s~--~~~~~~~k~~~~~~  125 (241)
                      .|++|+||+++.++.......+.+.     .+.+.+.+++.+      -.+.+.+|+|++|++.  ..+...++++..++
T Consensus        18 ~d~dGrpViv~~~~~l~~~~~D~e~-----Ll~~vl~tl~~~------~~~~y~lV~d~T~~~~~n~p~~~wl~~~~~ll   86 (256)
T 3pg7_A           18 TSKAGNPIFYYVARRFKTGQINGDL-----LIYHVLLTLKPY------YAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVF   86 (256)
T ss_dssp             ECTTSCEEEEEEGGGCCBTTBCHHH-----HHHHHHHHHTTT------TTSCEEEEEECTTCCGGGCCCHHHHHHTTTSS
T ss_pred             cCCCCCEEEEEEeecCCCCCCCHHH-----HHHHHHHHHHHh------cCCCeEEEEECCCCCcccCCcHHHHHHHHHHc
Confidence            5689999999999987654433111     111222222222      2367999999999996  35667899999999


Q ss_pred             HhhhhhhcceEEEEeCChHHHHHHHH-HhhhcChhhcCceEEeCCChHHHhccCCCCCCC
Q psy15467        126 QDCYPARFKAIHFINEPVQVDVLLAL-VKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILP  184 (241)
Q Consensus       126 q~~yP~rl~~i~ivN~P~~~~~~~~l-ik~fl~~k~~~ki~~~~~~~~~L~~~i~~~~LP  184 (241)
                      ...|...++++|++|+++++...+.. .++|.+.+..+|++++ ++.++|.++|+.++|.
T Consensus        87 p~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv-~sl~eL~~~i~~~~L~  145 (256)
T 3pg7_A           87 PGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFI-DCPGKLAEHIEHEQQK  145 (256)
T ss_dssp             CHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEE-SSTTGGGGTSCGGGCC
T ss_pred             CHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEE-CCHHHHHhhcCHHHcC
Confidence            99999999999999999999977665 5667777888999999 4789999999877663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	241
d1r5la2	185	c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot	2e-18
d1olma3	199	c.13.1.1 (A:76-274) Supernatant protein factor (SP	1e-14
d1auaa2	203	c.13.1.1 (A:97-299) C-terminal domain of phosphati	6e-13

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (192), Expect = 2e-18
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 12/136 (8%)

Query: 88  LLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPV 143
           L++ + + Q +G   + D            +P++ + + + L D +P + + IH INEPV
Sbjct: 52  LIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPV 111

Query: 144 QVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSIIVHGQNLDSLY 203
               + +++KPFL EK +++I +HG N          DILP+E        +G    S+ 
Sbjct: 112 IFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFPDILPLE--------YGGEEFSME 163

Query: 204 GANRPSWPCYEKNAGY 219
              +       K+  Y
Sbjct: 164 DICQEWTNFIMKSEDY 179

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (166), Expect = 1e-14
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 5/120 (4%)

Query: 72  LRQSDATSDHDIRTSGLLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTMISGLQD 127
           LR      +  ++           +      + D     +      +       +   ++
Sbjct: 46  LRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEE 105

Query: 128 CYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHG-QNLDSLYGYLPRDILPIE 186
            YP   K +  +  P    V   L+KPFL E TR KI+V G    + L  ++  D +P+E
Sbjct: 106 NYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVE 165

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.2 bits (153), Expect = 6e-13
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 96  QYSGFVFLLD---WNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALV 152
                  ++D    + +S Y+  + +R      Q+ YP R    + IN P        L 
Sbjct: 73  LVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLF 132

Query: 153 KPFLKEKTRDKIIVHGQN-LDSLYGYLPRDILPIE 186
           KPFL   T  KI + G +    L   +P + LP++
Sbjct: 133 KPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVK 167

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1r5la2	185	Alpha-tocopherol transfer protein {Human (Homo sap	100.0
d1olma3	199	Supernatant protein factor (SPF), middle domain {H	99.96
d1auaa2	203	C-terminal domain of phosphatidylinositol transfer	99.95
d1olma1	75	Supernatant protein factor (SPF), N-terminal domai	98.3
d1auaa1	93	N-terminal domain of phosphatidylinositol transfer	98.13
d1r5la1	66	Alpha-tocopherol transfer protein {Human (Homo sap	97.91

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-37  Score=253.33  Aligned_cols=172  Identities=24%  Similarity=0.329  Sum_probs=150.7

Q ss_pred             ccccCCCcccccCCCCCCCCCCeEEEEEeccCCCCCCchhhhccchhhhHHHHHhhhhhhccCCccccEEEEEeCCCCcc
Q psy15467         32 PLLSGGHLQVSPTPDGLTPGGHQNPILRLCVSSRLEPNVDLRQSDATSDHDIRTSGLLLVDTKIQYSGFVFLLDWNQTSI  111 (241)
Q Consensus        32 ~~l~~g~~~~l~~~~~~d~~G~~vii~r~~~~~~~~~~~~~~~~~~~~~~~i~~~E~l~~~~~~~~~g~v~I~D~~g~s~  111 (241)
                      ++++.|.+.++|.   .|++|++|+++|++++++...+..+.++     ..++++|.++.+++.|++|+++|+|++|+|+
T Consensus         4 ~~l~~g~~~~lp~---rD~~Gr~v~~~r~~~~d~~~~~~~~~~r-----~~~~~~e~~~~~~~~~~~g~~~I~D~~g~s~   75 (185)
T d1r5la2           4 GLLKAGYHGVLRS---RDPTGSKVLIYRIAHWDPKVFTAYDVFR-----VSLITSELIVQEVETQRNGIKAIFDLEGWQF   75 (185)
T ss_dssp             HHHHTTCEEECSS---CCTTCCEEEEEEGGGCCTTTSCHHHHHH-----HHHHHHHHHTTSHHHHHHCEEEEEECTTCCH
T ss_pred             HHHHcCCceecCC---CCcCcCEEEEEEcccCCCCCCCHHHHHH-----HHHHHHHHHHhccccCCceEEEEEECCCCCH
Confidence            4678899988775   4699999999999998887765443322     3345667788887789999999999999996


Q ss_pred             ----ccCHHHHHHHHHHHHhhhhhhcceEEEEeCChHHHHHHHHHhhhcChhhcCceEEeCCChHHHhccCCCCCCCccc
Q psy15467        112 ----YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEI  187 (241)
Q Consensus       112 ----~~~~~~~k~~~~~~q~~yP~rl~~i~ivN~P~~~~~~~~lik~fl~~k~~~ki~~~~~~~~~L~~~i~~~~LP~ey  187 (241)
                          +++++.+++++.++|++||+|++++|+||+|++|.++|+++||||++++++||+||+++.+++..++++++||++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~q~~yP~rl~~i~ivn~P~~~~~~~~~vk~fl~~k~~~Ki~~~~~~~~~~~~~~~~~~LP~~~  155 (185)
T d1r5la2          76 SHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFPDILPLEY  155 (185)
T ss_dssp             HHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHSTTTSCGGG
T ss_pred             HHhhhccHHHHHHHHHHHHhhCchhhheeEEEcCCHHHHHHHHHHHHhccHHHHhheEEeccchHHHHhhcCHHhCCHhc
Confidence                4799999999999999999999999999999999999999999999999999999987788888888999999999


Q ss_pred             CCC--ccccchhhHHHHhhhcCCCcc
Q psy15467        188 FNG--SIIVHGQNLDSLYGANRPSWP  211 (241)
Q Consensus       188 GG~--~~~~~~~~~~~~~~~~~~~~~  211 (241)
                      ||+  ++.+..++|.+++.++++||.
T Consensus       156 GG~~~~~~~~~~~~~~~~~~~~d~~~  181 (185)
T d1r5la2         156 GGEEFSMEDICQEWTNFIMKSEDYLS  181 (185)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHTHHHHH
T ss_pred             CCCCCChHHHHHHHHHHHHHHHHHHH
Confidence            995  567889999999999999985

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.2e-30  Score=212.44  Aligned_cols=146  Identities=21%  Similarity=0.263  Sum_probs=114.3

Q ss_pred             CCCCCCCeEEEEEeccCCCCCCchhhhccchhhhHHHHHhhhhhhc-------cCCccccEEEEEeCCCCcc-cc---CH
Q psy15467         47 GLTPGGHQNPILRLCVSSRLEPNVDLRQSDATSDHDIRTSGLLLVD-------TKIQYSGFVFLLDWNQTSI-YA---SP  115 (241)
Q Consensus        47 ~~d~~G~~vii~r~~~~~~~~~~~~~~~~~~~~~~~i~~~E~l~~~-------~~~~~~g~v~I~D~~g~s~-~~---~~  115 (241)
                      |.|++||+|++.|+++.++........... .....++.+|.+++.       ...+++|+++|+|++|+|+ ++   .+
T Consensus        15 G~Dk~Grpv~~~r~g~~d~~~l~~~~~~~~-~~~~~~~~~E~~~~~~~~~~~~~~~~v~~~~~I~Dl~g~s~~~~~~~~~   93 (199)
T d1olma3          15 GYDLDGCPVWYDIIGPLDAKGLLFSASKQD-LLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAV   93 (199)
T ss_dssp             EECTTSCEEEEEECTTCCHHHHHTTSCHHH-HHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHH
T ss_pred             cCCCCCCEEEEEecccCChHHhhccCCHHH-HHHHHHHHHHHHHHHHHHHHHhcCCccceEEEEEECCCCchhhhccccH
Confidence            478999999999999876532110000000 122233344444332       2245789999999999997 34   46


Q ss_pred             HHHHHHHHHHHhhhhhhcceEEEEeCChHHHHHHHHHhhhcChhhcCceEEeCCCh-HHHhccCCCCCCCcccCCCccc
Q psy15467        116 TLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNL-DSLYGYLPRDILPIEIFNGSII  193 (241)
Q Consensus       116 ~~~k~~~~~~q~~yP~rl~~i~ivN~P~~~~~~~~lik~fl~~k~~~ki~~~~~~~-~~L~~~i~~~~LP~eyGG~~~~  193 (241)
                      +.+++++.++|++||+|++++||||+|++|.++|+++||||+++|++||+||+++. ++|+++|++++||++|||++..
T Consensus        94 ~~l~~~~~~~q~~YPerl~~i~iiN~P~~f~~~w~ivk~fl~~~t~~KI~~~~~~~~~~L~~~i~~~~lP~~yGGt~~~  172 (199)
T d1olma3          94 EAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGTMTD  172 (199)
T ss_dssp             HHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSBGGGTSSBCC
T ss_pred             HHHHHHHHHHHHHHHHhhhheEEECCCHHHHHHHHHHHHhcCHHhhccEEEeCCCCHHHHHHhCCHhhCCHHhCCCCCC
Confidence            78999999999999999999999999999999999999999999999999997654 7899999999999999998643

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.3e-28  Score=200.58  Aligned_cols=146  Identities=21%  Similarity=0.210  Sum_probs=113.4

Q ss_pred             CCCCCCCeEEEEEeccCCCCCCchhhhccchhhhHHHHHhhhhhh--------ccCCccccEEEEEeCCCCcc-ccC--H
Q psy15467         47 GLTPGGHQNPILRLCVSSRLEPNVDLRQSDATSDHDIRTSGLLLV--------DTKIQYSGFVFLLDWNQTSI-YAS--P  115 (241)
Q Consensus        47 ~~d~~G~~vii~r~~~~~~~~~~~~~~~~~~~~~~~i~~~E~l~~--------~~~~~~~g~v~I~D~~g~s~-~~~--~  115 (241)
                      |.|++||+|+++|+++.++.......... -.+.+.++++|.++.        ....+++++++|+|++|+++ ++.  .
T Consensus        17 G~Dk~GrpV~~~r~g~~~~~~l~~~~~~~-~~~~~~~~~~E~~~~~~~~~~~~~~~~~v~~~i~IiD~~g~s~~~~~~~~   95 (203)
T d1auaa2          17 KTDKDGRPVYFEELGAVNLHEMNKVTSEE-RMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVM   95 (203)
T ss_dssp             EECTTSCEEEEECGGGCCHHHHTTTCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHHH
T ss_pred             CCCCCCCEEEEEECCCCChHHhcccCCHH-HHHHHHHHHHHHHHHHHHHHhhhhccCccceEEEEEECCCCChHHhhhHH
Confidence            57899999999999987643211000000 012223344454432        22345789999999999997 332  3


Q ss_pred             HHHHHHHHHHHhhhhhhcceEEEEeCChHHHHHHHHHhhhcChhhcCceEEeCCC-hHHHhccCCCCCCCcccCCCccc
Q psy15467        116 TLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQN-LDSLYGYLPRDILPIEIFNGSII  193 (241)
Q Consensus       116 ~~~k~~~~~~q~~yP~rl~~i~ivN~P~~~~~~~~lik~fl~~k~~~ki~~~~~~-~~~L~~~i~~~~LP~eyGG~~~~  193 (241)
                      ..++.++.++|++||+|++++||||+|++|.++|+++|+||+++|++||++++++ .++|.++|++++||.+|||++..
T Consensus        96 ~~~k~~~~~~q~~yPe~l~~i~ivN~P~~~~~~~~~vk~fl~~~t~~KI~~~~~~~~~~L~~~id~~~LP~~~GG~~~~  174 (203)
T d1auaa2          96 SYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGGKSEV  174 (203)
T ss_dssp             HHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSBGGGTSCBCC
T ss_pred             HHHHHHHHHHHHhChHhhcceEEECCcHHHHHHHHHHHhhcCHHHhhceeecCCCCHHHHHhhCCHhhChHHhCCCCcC
Confidence            5789999999999999999999999999999999999999999999999999754 57999999999999999998643

>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Supernatant protein factor (SPF), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2e-08  Score=67.96  Aligned_cols=29  Identities=14%  Similarity=0.137  Sum_probs=26.8

Q ss_pred             ccchhhhcCCCChhhHhhcCcCccccccc
Q psy15467          3 SMGKKLRRDTIDQERPLRSLPVPAQLVES   31 (241)
Q Consensus         3 ~llRFLrArkfdv~kA~~~L~~~~~~~~~   31 (241)
                      +||||||||+||+++|.+||+++++|+.+
T Consensus        37 ~LlRFLrAr~fdv~kA~~ml~~~l~WR~~   65 (75)
T d1olma1          37 FLLRWLRARSFDLQKSEAMLRKHVEFRKQ   65 (75)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999764

>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: N-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=6.4e-08  Score=68.09  Aligned_cols=29  Identities=10%  Similarity=0.057  Sum_probs=26.9

Q ss_pred             ccchhhhcCCCChhhHhhcCcCccccccc
Q psy15467          3 SMGKKLRRDTIDQERPLRSLPVPAQLVES   31 (241)
Q Consensus         3 ~llRFLrArkfdv~kA~~~L~~~~~~~~~   31 (241)
                      +||||||||+||+++|.+||.++++|+++
T Consensus        54 ~llRfLrAr~fd~~~a~~ml~~~l~wR~~   82 (93)
T d1auaa1          54 TLLRFLRARKFDVQLAKEMFENCEKWRKD   82 (93)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999864

>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=3.8e-07  Score=59.87  Aligned_cols=28  Identities=18%  Similarity=0.054  Sum_probs=24.7

Q ss_pred             ccchhhhcCCCChhhHhhcCcCcccccc
Q psy15467          3 SMGKKLRRDTIDQERPLRSLPVPAQLVE   30 (241)
Q Consensus         3 ~llRFLrArkfdv~kA~~~L~~~~~~~~   30 (241)
                      .|||||||||||+++|++||.+..+|+.
T Consensus        27 ~LlrFLRarkf~~~ka~~~l~~y~~~R~   54 (66)
T d1r5la1          27 FLLRFLRARDFDLDLAWRLLKNYYKWRA   54 (66)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            5899999999999999999977766654