Psyllid ID: psy15471

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550
MLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQIPFWALVVVLRAKGSSLKQKFLNAISPTEDWGPALRAKGSSLKQKFLNAISPTEDWGPADPEIKKQWAEEKKNFEKVPMKPLNGEII
cEEEEcHHHHHHHHHHHHccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEcccccccccccccccEEcHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEHHHHHHHHHHHHHccccccccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEcHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHEEEcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHccccccccccccccc
cEEEEcHHHHHHHHHHHHHHcccccEHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHccccccccccEEEEEcccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccEEEEEcHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccHHHcccHHHHHccccccccccccccccccccccccccccccccccccccccc
mlvlagkpmYFLELAVgqfggvgplglwnccpiakgVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSlqfdvpwskcdpewadmstcyvrgvnvsmshVKSARVVICQVESATRKVLKLsdgienlgpvkTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLlqdgaisgvlyfitptWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSyndfsnnvyrDALVVSVMDTITSIMSGIVTFSILGAMahdlnvpinqvvkegpglafvaypeallrlpfpQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLrnhklpfcicTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFmlkfqpgvywrftwvfcapVILATIFIYSIIahkplhyenydypdwadgVGWCLACLSMCQIPFWALVVVLRAKGSSLKQKFLNaisptedwgpalrakgsSLKQKFLNaisptedwgpadpeIKKQWAEEKKNfekvpmkplngeii
MLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQIPFWALVVVLRAKGSSLKQKFLnaisptedwgPALRAKGSSLKQKFLNaisptedwgpaDPEIKKQWAEekknfekvpmkplngeii
MLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVIlvtllvtgllQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQIPFWALVVVLRAKGSSLKQKFLNAISPTEDWGPALRAKGSSLKQKFLNAISPTEDWGPADPEIKKQWAEEKKNFEKVPMKPLNGEII
**VLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQIPFWALVVVLRAKGSSLKQKFLNAISPTEDW********************************************************
MLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQIPFWALVVVLRAKGSSLKQKFLNAISPTEDWGPALRA***********************************************EII
MLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQIPFWALVVVLRAKGSSLKQKFLNAISPTEDWGPALRAKGSSLKQKFLNAISPTEDWGPADPEIKKQWAEEKKNFEKVPMKPLNGEII
MLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVN********ARVVICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQIPFWALVVVLRAKGSSLKQKFLNAISPTEDWGPALRAKG************************************************
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ooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQIPFWALVVVLRAKGSSLKQKFLNAISPTEDWGPALRAKGSSLKQKFLNAISPTEDWGPADPEIKKQWAEEKKNFEKVPMKPLNGEII
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query550 2.2.26 [Sep-21-2011]
Q9Y345797 Sodium- and chloride-depe yes N/A 0.929 0.641 0.420 1e-119
A7Y2X0790 Sodium- and chloride-depe N/A N/A 0.952 0.663 0.415 1e-119
P58295799 Sodium- and chloride-depe yes N/A 0.929 0.639 0.420 1e-119
Q761V0799 Sodium- and chloride-depe yes N/A 0.929 0.639 0.418 1e-119
A7Y2W8633 Sodium- and chloride-depe N/A N/A 0.96 0.834 0.399 1e-116
P30531599 Sodium- and chloride-depe no N/A 0.909 0.834 0.410 1e-112
P23978599 Sodium- and chloride-depe no N/A 0.909 0.834 0.408 1e-111
P31648599 Sodium- and chloride-depe no N/A 0.909 0.834 0.408 1e-111
P48057598 Sodium- and chloride-depe N/A N/A 0.907 0.834 0.410 1e-111
P28571692 Sodium- and chloride-depe no N/A 0.958 0.761 0.401 1e-110
>sp|Q9Y345|SC6A5_HUMAN Sodium- and chloride-dependent glycine transporter 2 OS=Homo sapiens GN=SLC6A5 PE=1 SV=3 Back     alignment and function desciption
 Score =  431 bits (1107), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/545 (42%), Positives = 326/545 (59%), Gaps = 34/545 (6%)

Query: 1   MLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTL 60
           ML LAG P++FLE+++GQF   GP+ +W   P  +G G+AM+ +S+++ IYYNVI+ YTL
Sbjct: 236 MLALAGLPIFFLEVSLGQFASQGPVSVWKAIPALQGCGIAMLIISVLIAIYYNVIICYTL 295

Query: 61  YYMFSSLQFDVPWSKCDPEW--------------------------ADMSTCYVRGVNVS 94
           +Y+F+S    +PW  C+  W                           + + C     NV+
Sbjct: 296 FYLFASFVSVLPWGSCNNPWNTPECKDKTKLLLDSCVISDHPKIQIKNSTFCMTAYPNVT 355

Query: 95  MSHVKSA--RVVICQVESATRK-VLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGI 151
           M +  S   +  +   E   +  VLK+S GIE  G ++  LA+CL ++W++V   L KGI
Sbjct: 356 MVNFTSQANKTFVSGSEEYFKYFVLKISAGIEYPGEIRWPLALCLFLAWVIVYASLAKGI 415

Query: 152 KTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMF 211
           KTSGKVVYF ATFPYV+LV LL+ G+   GA +G+ YFITP WEKL D  VW  AA Q+F
Sbjct: 416 KTSGKVVYFTATFPYVVLVILLIRGVTLPGAGAGIWYFITPKWEKLTDATVWKDAATQIF 475

Query: 212 FSLSVSMGGLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPI 271
           FSLS + GGLI  SSYN F NN YRD L+V+  ++ TSI +G V FS++G MA++  V I
Sbjct: 476 FSLSAAWGGLITLSSYNKFHNNCYRDTLIVTCTNSATSIFAGFVIFSVIGFMANERKVNI 535

Query: 272 NQVVKEGPGLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEF- 330
             V  +GPG+AFV YPEAL RLP    W+I+FFLML  LGLD+ FA +E ++TS+SDEF 
Sbjct: 536 ENVADQGPGIAFVVYPEALTRLPLSPFWAIIFFLMLLTLGLDTMFATIETIVTSISDEFP 595

Query: 331 LVLRNHKLPFCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWV 390
             LR HK  F +   +  +++G   +T GG Y+  L+D Y    A++ IAIFE V + +V
Sbjct: 596 KYLRTHKPVFTLGCCICFFIMGFPMITQGGIYMFQLVDTYAASYALVIIAIFELVGISYV 655

Query: 391 YGLKNLCWDLKFMLKFQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWAD 450
           YGL+  C D++ M+ FQP ++W+  W F  P IL  I  +S    +P+ Y +Y YP+W+ 
Sbjct: 656 YGLQRFCEDIEMMIGFQPNIFWKVCWAFVTPTILTFILCFSFYQWEPMTYGSYRYPNWSM 715

Query: 451 GVGWCLACLSMCQIPFWALVVVLRAKGSSLKQKFLNAISPTEDWGPALRAKGSSLKQKFL 510
            +GW +   S+  IP   ++ +  A G  +++  L   SP  DWGP L        +++ 
Sbjct: 716 VLGWLMLACSVIWIPIMFVIKMHLAPGRFIERLKL-VCSPQPDWGPFL---AQHRGERYK 771

Query: 511 NAISP 515
           N I P
Sbjct: 772 NMIDP 776
Terminates the action of glycine by its high affinity sodium-dependent reuptake into presynaptic terminals. May be responsible for the termination of neurotransmission at strychnine-sensitive glycinergic synapses.
Homo sapiens (taxid: 9606)
>sp|A7Y2X0|SC6A5_XENLA Sodium- and chloride-dependent glycine transporter 2 OS=Xenopus laevis GN=slc6a5 PE=2 SV=1 Back     alignment and function description
>sp|P58295|SC6A5_RAT Sodium- and chloride-dependent glycine transporter 2 OS=Rattus norvegicus GN=Slc6a5 PE=2 SV=1 Back     alignment and function description
>sp|Q761V0|SC6A5_MOUSE Sodium- and chloride-dependent glycine transporter 2 OS=Mus musculus GN=Slc6a5 PE=2 SV=1 Back     alignment and function description
>sp|A7Y2W8|SC6A9_XENLA Sodium- and chloride-dependent glycine transporter 1 OS=Xenopus laevis GN=slc6a9 PE=2 SV=1 Back     alignment and function description
>sp|P30531|SC6A1_HUMAN Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens GN=SLC6A1 PE=1 SV=2 Back     alignment and function description
>sp|P23978|SC6A1_RAT Sodium- and chloride-dependent GABA transporter 1 OS=Rattus norvegicus GN=Slc6a1 PE=1 SV=1 Back     alignment and function description
>sp|P31648|SC6A1_MOUSE Sodium- and chloride-dependent GABA transporter 1 OS=Mus musculus GN=Slc6a1 PE=1 SV=2 Back     alignment and function description
>sp|P48057|SC6A1_MUSCO Sodium- and chloride-dependent GABA transporter 1 OS=Mus cookii GN=Slc6a1 PE=2 SV=1 Back     alignment and function description
>sp|P28571|SC6A9_MOUSE Sodium- and chloride-dependent glycine transporter 1 OS=Mus musculus GN=Slc6a9 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query550
391329891 714 PREDICTED: sodium- and chloride-dependen 0.890 0.686 0.563 1e-167
391347488585 PREDICTED: LOW QUALITY PROTEIN: sodium- 0.938 0.882 0.486 1e-140
442761189 729 Putative sodium-neurotransmitter symport 0.894 0.674 0.495 1e-138
241697170525 GABA transporter, putative [Ixodes scapu 0.838 0.878 0.527 1e-129
260832524579 solute carrier family 6, member 9 [Branc 0.932 0.886 0.423 1e-123
57222253 786 sodium- and chloride-dependent glycine t 0.954 0.667 0.437 1e-123
427784499 659 Putative sodium:neurotransmitter symport 0.923 0.770 0.415 1e-123
47230774 712 unnamed protein product [Tetraodon nigro 0.927 0.716 0.428 1e-122
410912692 772 PREDICTED: sodium- and chloride-dependen 0.927 0.660 0.428 1e-122
348533798 797 PREDICTED: sodium- and chloride-dependen 0.927 0.639 0.429 1e-121
>gi|391329891|ref|XP_003739400.1| PREDICTED: sodium- and chloride-dependent glycine transporter 2-like [Metaseiulus occidentalis] Back     alignment and taxonomy information
 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 297/527 (56%), Positives = 382/527 (72%), Gaps = 37/527 (7%)

Query: 1   MLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTL 60
           ML+L GKPMYF+ELA GQF G GPL +W C PI KGVG+AM+  SLIVC+YYNV+MSYTL
Sbjct: 115 MLMLVGKPMYFMELAFGQFAGQGPLTIWACSPICKGVGMAMIISSLIVCVYYNVVMSYTL 174

Query: 61  YYMFSSLQFDVPWSKCDPEWADMSTCYVR-----GVNVSMSHVKSARVVICQVESATRKV 115
           ++M ++ Q +VPW KC PEW    TC+VR     G NVS    +     I Q++   R V
Sbjct: 175 HFMAAAFQSEVPWEKCAPEWN--GTCFVRSEAAKGTNVS----EELDFDIIQIDFP-RTV 227

Query: 116 LKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVT 175
           L +S GIE+L  +K DLA+CL +SW++V+ CL+KGIKTSGKVVYFAATFPYVIL+TL+VT
Sbjct: 228 LDISSGIEDLNGIKWDLALCLFISWVIVIACLLKGIKTSGKVVYFAATFPYVILLTLMVT 287

Query: 176 GLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVY 235
           GL+Q+GA++GVLYFITP + KLL I+VW AAAGQMFFSL VS GGLIMYSSYN F NNV+
Sbjct: 288 GLVQEGAMNGVLYFITPDFNKLLSIEVWQAAAGQMFFSLGVSGGGLIMYSSYNQFRNNVF 347

Query: 236 RDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPF 295
           RDA++VS++DT+TSI++G+V FS+LGAMAH+L V +  VV+ GPGLAFVAYPEAL RLP 
Sbjct: 348 RDAMIVSILDTVTSIIAGLVIFSVLGAMAHELGVKVEDVVQGGPGLAFVAYPEALARLPC 407

Query: 296 PQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSC 355
           PQLWS+LFFLMLF+LGLDSEFALLEN LT ++D+   LR HK+PF I T + C++ GL  
Sbjct: 408 PQLWSVLFFLMLFILGLDSEFALLENFLTGIADQVPFLRRHKMPFTIVTGVCCFIFGLPF 467

Query: 356 VTH-----------------------GGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYG 392
           VT                        GG YVL +MD YGG TA++FIAI EC+++ W+YG
Sbjct: 468 VTRVRIFLPSKLPPPIAPDFRCLLQLGGQYVLEIMDKYGGSTALIFIAICECIAISWMYG 527

Query: 393 LKNLCWDLKFMLKFQPGVYWRFTWVFCAPVILATIFIYSII-AHKPLHYENYDYPDWADG 451
             N+  D+ FML  + G YW++TW F AP+IL  +F  ++  A +P+ Y +Y YP WA+ 
Sbjct: 528 YLNISNDIYFMLNKRLGPYWKWTWCFTAPIILFVVFTLAVSDAARPVTYGSYVYPSWANA 587

Query: 452 VGWCLACLSMCQIPFWALVVVLRAK-GSSLKQKFLNAISPTEDWGPA 497
           +GWC+A  +M QIP WA++ V R K   S+ ++ L A  P+  WGP+
Sbjct: 588 MGWCVALCAMLQIPIWAIIQVCRVKEADSITERILKAARPSSKWGPS 634

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|391347488|ref|XP_003747993.1| PREDICTED: LOW QUALITY PROTEIN: sodium- and chloride-dependent glycine transporter 2-like [Metaseiulus occidentalis] Back     alignment and taxonomy information
>gi|442761189|gb|JAA72753.1| Putative sodium-neurotransmitter symporter, partial [Ixodes ricinus] Back     alignment and taxonomy information
>gi|241697170|ref|XP_002413104.1| GABA transporter, putative [Ixodes scapularis] gi|215506918|gb|EEC16412.1| GABA transporter, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|260832524|ref|XP_002611207.1| solute carrier family 6, member 9 [Branchiostoma floridae] gi|229296578|gb|EEN67217.1| solute carrier family 6, member 9 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|57222253|ref|NP_001009557.1| sodium- and chloride-dependent glycine transporter 2 [Danio rerio] gi|326669253|ref|XP_001923544.3| PREDICTED: sodium- and chloride-dependent glycine transporter 2-like [Danio rerio] gi|55166905|dbj|BAD67440.1| glycine transporter 2 [Danio rerio] gi|190337820|gb|AAI62099.1| Solute carrier family 6 (neurotransmitter transporter, glycine), member 5 [Danio rerio] Back     alignment and taxonomy information
>gi|427784499|gb|JAA57701.1| Putative sodium:neurotransmitter symporter family [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|47230774|emb|CAF99967.1| unnamed protein product [Tetraodon nigroviridis] Back     alignment and taxonomy information
>gi|410912692|ref|XP_003969823.1| PREDICTED: sodium- and chloride-dependent glycine transporter 2-like [Takifugu rubripes] Back     alignment and taxonomy information
>gi|348533798|ref|XP_003454391.1| PREDICTED: sodium- and chloride-dependent glycine transporter 2-like [Oreochromis niloticus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query550
UNIPROTKB|D4ABA4628 Slc6a9 "Transporter" [Rattus n 0.696 0.609 0.435 1.2e-124
ZFIN|ZDB-GENE-050105-2786 slc6a5 "solute carrier family 0.747 0.522 0.457 6.7e-119
UNIPROTKB|Q9Y345797 SLC6A5 "Sodium- and chloride-d 0.72 0.496 0.451 1.5e-118
UNIPROTKB|F1P8R8766 SLC6A5 "Transporter" [Canis lu 0.72 0.516 0.451 2.5e-118
UNIPROTKB|F1N5R0798 SLC6A5 "Transporter" [Bos taur 0.72 0.496 0.451 3.1e-118
UNIPROTKB|F1NIV1798 SLC6A5 "Transporter" [Gallus g 0.721 0.497 0.455 5.1e-118
RGD|621824799 Slc6a5 "solute carrier family 0.72 0.495 0.449 5.1e-118
UNIPROTKB|P58295799 Slc6a5 "Sodium- and chloride-d 0.72 0.495 0.449 5.1e-118
MGI|MGI:105090799 Slc6a5 "solute carrier family 0.72 0.495 0.446 1e-117
UNIPROTKB|F1NG92636 SLC6A7 "Transporter" [Gallus g 0.896 0.775 0.416 4.2e-115
UNIPROTKB|D4ABA4 Slc6a9 "Transporter" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
 Score = 894 (319.8 bits), Expect = 1.2e-124, Sum P(3) = 1.2e-124
 Identities = 170/390 (43%), Positives = 254/390 (65%)

Query:   115 VLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGK---VVYFAATFPYVIXXX 171
             VLKLSD I + G V+  L  CL VSW+VV LCL++G+K+SGK   VVYF ATFPYV+   
Sbjct:   192 VLKLSDDIGDFGEVRLPLLGCLGVSWVVVFLCLIRGVKSSGKARFVVYFTATFPYVVLTI 251

Query:   172 XXXXXXXQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFS 231
                     +GA +G++Y++TP W+K+L+ +VW  AA Q+F+SL  + GGLI  +SYN F 
Sbjct:   252 LFVRGVTLEGAFTGIMYYLTPKWDKILEAKVWGDAASQIFYSLGCAWGGLITMASYNKFH 311

Query:   232 NNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALL 291
             NN YRD++++S+ +  TS+ +G V FSILG MA+ L V +++V   GPGLAFVAYPEAL 
Sbjct:   312 NNCYRDSVIISITNCATSVYAGFVIFSILGFMANHLGVDVSRVADHGPGLAFVAYPEALT 371

Query:   292 RLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEF---LVLRNHKLPFCICTALVC 348
              LP   LWS+LFF ML +LGL ++F LLE ++T++ DE     +L+  K    +  A+  
Sbjct:   372 LLPISPLWSLLFFFMLILLGLGTQFCLLETLVTAIVDEVGNEWILQK-KTYVTLGVAVAG 430

Query:   349 YVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQP 408
             +++G+   +  G Y L LMD Y    +++ I+   CVS++++YG +N   D++ ML F P
Sbjct:   431 FLLGIPLTSQAGIYWLLLMDNYAASFSLVVISCIMCVSIMYIYGHRNYFQDIQMMLGFPP 490

Query:   409 GVYWRFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQIPFWA 468
              ++++  W F +P I+  I I+++I ++P+ Y +Y YP WA  +G+ +A  S+  IP +A
Sbjct:   491 PLFFQICWRFVSPTIIFFILIFTVIQYRPITYNHYQYPGWAVAIGFLMALSSVICIPLYA 550

Query:   469 LVVVLRAKGSSLKQKFLNAISPTEDWGPAL 498
             L  + R  G +L Q+  NA  P+ DWGPAL
Sbjct:   551 LFQLCRTDGDTLLQRLKNATKPSRDWGPAL 580
GO:0005283 "sodium:amino acid symporter activity" evidence=IEA
GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA
GO:0005887 "integral to plasma membrane" evidence=IEA
ZFIN|ZDB-GENE-050105-2 slc6a5 "solute carrier family 6 (neurotransmitter transporter, glycine), member 5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y345 SLC6A5 "Sodium- and chloride-dependent glycine transporter 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P8R8 SLC6A5 "Transporter" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1N5R0 SLC6A5 "Transporter" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NIV1 SLC6A5 "Transporter" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|621824 Slc6a5 "solute carrier family 6 (neurotransmitter transporter, glycine), member 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P58295 Slc6a5 "Sodium- and chloride-dependent glycine transporter 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:105090 Slc6a5 "solute carrier family 6 (neurotransmitter transporter, glycine), member 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NG92 SLC6A7 "Transporter" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q761V0SC6A5_MOUSENo assigned EC number0.41830.92900.6395yesN/A
P58295SC6A5_RATNo assigned EC number0.42010.92900.6395yesN/A
Q9Y345SC6A5_HUMANNo assigned EC number0.42010.92900.6411yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query550
cd11496543 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-depen 0.0
cd11500544 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent 0.0
pfam00209506 pfam00209, SNF, Sodium:neurotransmitter symporter 1e-177
cd11497539 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen 1e-173
cd11501601 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent 1e-153
cd11499606 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent 1e-151
cd11498585 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent 1e-148
cd11556552 cd11556, SLC6sbd_SERT-like_u1, uncharacterized sub 1e-148
cd10332565 cd10332, SLC6sbd-B0AT-like, System B(0) neutral am 1e-143
cd10324417 cd10324, SLC6sbd, Solute carrier 6 family, neurotr 1e-142
cd11513537 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent 1e-140
cd11506598 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent 1e-139
cd11514555 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent 1e-134
cd11512560 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent n 1e-130
cd11507544 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent 1e-127
cd11510542 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent 1e-124
cd11509592 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent c 1e-123
cd11511541 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent 1e-122
cd11508542 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent 1e-117
cd11517576 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3 1e-94
cd11515530 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurot 7e-94
cd11518576 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent 3e-92
cd11516581 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral am 5e-85
cd11522580 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-ch 2e-84
cd11521589 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransm 2e-79
cd11502543 cd11502, SLC6sbd_NTT5, Neurotransmitter transporte 6e-79
cd10334480 cd10334, SLC6sbd_u1, uncharacterized bacterial and 2e-74
cd11554406 cd11554, SLC6sbd_u2, uncharacterized eukaryotic so 6e-56
COG0733439 COG0733, COG0733, Na+-dependent transporters of th 3e-51
cd10336439 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfa 3e-45
cd10333500 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and 3e-32
cd10324417 cd10324, SLC6sbd, Solute carrier 6 family, neurotr 2e-22
cd06857413 cd06857, SLC5-6-like_sbd, Solute carrier families 0.002
>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain Back     alignment and domain information 
 Score =  530 bits (1367), Expect = 0.0
 Identities = 206/499 (41%), Positives = 315/499 (63%), Gaps = 12/499 (2%)

Query: 2   LVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLY 61
           LVL G P++FLE+A+GQ+   G +  W  CP+ KG+G A   +   + IYY VI+++ L+
Sbjct: 47  LVLCGIPIFFLEVALGQYTSQGGITAWKICPLFKGIGYASAVIVFWLNIYYIVILAWALF 106

Query: 62  YMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHV-----KSARVVICQVESATRKVL 116
           Y+F+S   ++PW+ CD  W     C     N ++S++      +        E   R+VL
Sbjct: 107 YLFNSFTSELPWTTCDNWWNT-ECCVETYSNNNLSNLTKNCSNNTNSTSPVEEFWERRVL 165

Query: 117 KLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTG 176
            +SDGIE++G ++ +LA+CL ++WI+   C+ KG+K++GKVVYF ATFPYV+L+ LL+ G
Sbjct: 166 GISDGIEDIGSIRWELALCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYVMLIILLIRG 225

Query: 177 LLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYR 236
           +   GA  G+ +++ P   KLLD QVW  A  Q+FFS  + +G L    SYN F+NN Y+
Sbjct: 226 VTLPGASDGIYFYLKPDLTKLLDPQVWIDAGTQIFFSYGIGLGSLTALGSYNKFNNNCYK 285

Query: 237 DALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFP 296
           D++++  +++ TS  +G   FSILG MA +  VPI++V + GPGLAF+AYP A+  LP P
Sbjct: 286 DSIILCFLNSGTSFFAGFAIFSILGFMAQEQGVPISEVAESGPGLAFIAYPRAVSLLPLP 345

Query: 297 QLWSILFFLMLFVLGLDSEFALLENVLTSVSDEF---LVLRNHKLPFCICTALVCYVIGL 353
           QLW++LFF+ML +LGLDS+F  +E  +T++ D +   L LR  +  F     LVC++IGL
Sbjct: 346 QLWAVLFFIMLLLLGLDSQFVGVEGFVTAIVDLYPNVLRLRYRREIFVAIVCLVCFLIGL 405

Query: 354 SCVTHGGNYVLTLMDVYG-GGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYW 412
             VT GG YV  L D Y   G  +L++A FEC+++ WVYG      +++ M+ ++PG +W
Sbjct: 406 PMVTEGGIYVFQLFDYYAASGICLLWLAFFECIAISWVYGADRFYDNIEDMIGYRPGPWW 465

Query: 413 RFTWVFCAPVILATIFIYSIIAHKPLHYEN-YDYPDWADGVGWCLACLSMCQIPFWALVV 471
           ++ W F  P I   IF++S++ + PL Y N Y YP WA+ +GW LA  SM  IP +A+ +
Sbjct: 466 KYCWKFLTPAICLGIFVFSLVKYTPLTYGNTYVYPWWAEAIGWFLALSSMLCIPGYAIYI 525

Query: 472 VLRAKGSSLKQKFLNAISP 490
           +L+  G SLK++     +P
Sbjct: 526 LLKTPG-SLKERLRKLTTP 543

This subgroup represents the solute-binding domain of TauT-like Na(+)- and Cl(-)-dependent transporters. Family members include: human TauT which transports taurine, human GAT1, GAT2, and GAT3, and BGT1, which transport gamma-aminobutyric acid (GABA), and human CT1 which transports creatine. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 543
>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain Back     alignment and domain information
>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family Back     alignment and domain information
>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain Back     alignment and domain information
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain Back     alignment and domain information
>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain Back     alignment and domain information
>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain Back     alignment and domain information
>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain Back     alignment and domain information
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain Back     alignment and domain information
>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain Back     alignment and domain information
>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain Back     alignment and domain information
>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain Back     alignment and domain information
>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding domain Back     alignment and domain information
>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter transporter 4, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid transporter SIT1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids transporter, B0AT1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter 4; solute-binding domain Back     alignment and domain information
>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5; solute-binding domain Back     alignment and domain information
>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain Back     alignment and domain information
>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6 subfamily; solute-binding domain Back     alignment and domain information
>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain Back     alignment and domain information
>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain Back     alignment and domain information
>gnl|CDD|212031 cd06857, SLC5-6-like_sbd, Solute carrier families 5 and 6-like; solute binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 550
KOG3660|consensus629 100.0
KOG3659|consensus629 100.0
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 100.0
COG0733439 Na+-dependent transporters of the SNF family [Gene 100.0
PF03845320 Spore_permease: Spore germination protein; InterPr 95.34
TIGR00911501 2A0308 L-type amino acid transporter. 95.14
TIGR00912359 2A0309 spore germination protein (amino acid perme 94.72
PRK11375484 allantoin permease; Provisional 94.03
PRK15049499 L-asparagine permease; Provisional 91.9
PRK11387471 S-methylmethionine transporter; Provisional 91.44
PRK10249458 phenylalanine transporter; Provisional 91.14
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 91.13
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 91.06
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 90.28
PRK10655438 potE putrescine transporter; Provisional 90.03
PRK10836489 lysine transporter; Provisional 89.94
TIGR00837381 araaP aromatic amino acid transport protein. aroma 89.9
TIGR00909429 2A0306 amino acid transporter. 89.89
TIGR00913478 2A0310 amino acid permease (yeast). 89.73
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 89.11
PRK00701439 manganese transport protein MntH; Reviewed 89.06
PRK10644445 arginine:agmatin antiporter; Provisional 88.29
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 88.22
COG3949349 Uncharacterized membrane protein [Function unknown 88.18
TIGR00842453 bcct choline/carnitine/betaine transport. properti 88.14
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 87.67
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 87.13
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 87.06
TIGR00814397 stp serine transporter. The HAAAP family includes 86.31
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 85.96
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 85.54
PRK09928 679 choline transport protein BetT; Provisional 85.5
TIGR00930 953 2a30 K-Cl cotransporter. 85.48
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 85.3
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 84.03
PRK10746461 putative transport protein YifK; Provisional 83.97
PRK09950506 putative transporter; Provisional 83.25
COG1457442 CodB Purine-cytosine permease and related proteins 81.83
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 81.46
PRK09928679 choline transport protein BetT; Provisional 81.11
PRK10238456 aromatic amino acid transporter; Provisional 80.1
>KOG3660|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.4e-120  Score=994.70  Aligned_cols=500  Identities=46%  Similarity=0.918  Sum_probs=476.4

Q ss_pred             CEEEehhHHHHHHHHHHHhcCCCcccccc-ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q psy15471          1 MLVLAGKPMYFLELAVGQFGGVGPLGLWN-CCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPE   79 (550)
Q Consensus         1 ~l~~~GiPl~~lE~~lGQ~~~~g~i~~~~-~~P~~kGiG~~~~~~~~~i~~YY~vi~aw~l~Y~~~sf~~~lpW~~C~~~   79 (550)
                      +++++|+|+++||+++|||+++||+++|| ++|++||+|+++++++.++++||++++||+++|+++||++++||++|+|+
T Consensus        79 ~l~l~GlP~~~LE~slGQf~~~g~v~~wrri~Pif~GvG~a~v~~~~~~~~Yy~viiaw~l~Yl~~sf~~~lpW~~C~~~  158 (629)
T KOG3660|consen   79 VLFLFGLPLFFLEMSLGQFTSQGPVSVWRRICPIFKGVGWASVVISALLAIYYIVILAWALYYLFSSFTSDLPWSTCNNP  158 (629)
T ss_pred             HHHHhcchHHHHHHHHhhhhcCChHHHHHHhChHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChhhcCCh
Confidence            36789999999999999999999999997 99999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccc--ccc---cc----ccccCchhhhhhhhhhhhhcccccCC--CCCccchhHHHHHHHHHHHHHHHHHHh
Q psy15471         80 WADMSTCYVRG--VNV---SM----SHVKSARVVICQVESATRKVLKLSDG--IENLGPVKTDLAICLAVSWIVVVLCLM  148 (550)
Q Consensus        80 wnt~~~C~~~~--~n~---~~----~~~~s~~~~~~~~~ff~~~vL~~s~~--~~~~g~~~w~l~~~l~~~w~iv~~~~~  148 (550)
                      ||| ++|.+.+  .++   ++    .+..++     .++++.+.+++.+++  ++++|.++|++++|++++|+++++|++
T Consensus       159 wnt-~~c~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~w~L~~~l~~~Wliv~~~i~  232 (629)
T KOG3660|consen  159 WNT-EYCLDGTSKQNCANLTKLSNALNFNSP-----VAEFWENRVLSLSDGSGIEDFGSINWPLALCLALAWLIVFFCIW  232 (629)
T ss_pred             hcC-Cccccccccccccccccccchhhhccc-----hhhhhhhhhcccccccccccCCCCChHHHHHHHHHHHHHHHHHh
Confidence            998 9998753  111   11    112244     789999998888774  889999999999999999999999999


Q ss_pred             ccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccccchHHHHHHHHHHHHHhhcccchhhhccccc
Q psy15471        149 KGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYN  228 (550)
Q Consensus       149 kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ig~G~li~~aSyn  228 (550)
                      ||+|++||++|+++++||+++++|++|++|||||.+|++||++|||+||.|+++|.||++|+|||+|+|+|++|++||||
T Consensus       233 KGvks~GKvvY~~a~fPyviL~iLliRgvTL~Ga~~Gi~~~l~~~~~kL~~~~vW~dA~~QiffSlsi~~G~li~laSyn  312 (629)
T KOG3660|consen  233 KGVKSSGKVVYFTATFPYVILIVLLIRGVTLPGAGDGINFYLTPDWTKLLDPQVWGDAATQIFFSLSIGFGGLIALASYN  312 (629)
T ss_pred             hcccccCcEEEEEehhHHHHHHHHHHHHccCCCHHHHHHHHHhhhhHhhcChhhHHHHHHhHHHhHHHHHhhhheeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccceeehhHHHHHHHHHHHHHHHHHHHHHHhhcCC-CccccccCCCceEeehhHHHHhcCCCchHHHHHHHHHH
Q psy15471        229 DFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNV-PINQVVKEGPGLAFVAYPEALLRLPFPQLWSILFFLML  307 (550)
Q Consensus       229 ~~~~n~~rda~~v~~~n~~~silag~~ifs~lG~~a~~~~~-~v~~v~~~G~~L~Fi~~P~a~~~~p~~~lws~lFF~~l  307 (550)
                      |++||++|||+++++.|+.+|+++|+++||++||+|++.|+ ++++++++|++|+|++||+++++||.+++|++|||+|+
T Consensus       313 k~~nN~yrDa~lv~~~~~~tS~~~g~~iFsilGfla~~~~v~~~~~v~~~g~~LaFi~YP~a~~~~p~~plWs~LfF~ml  392 (629)
T KOG3660|consen  313 KFNNNCYRDAILVVLLDTITSLLAGFAIFSILGFLAHEQGVSDIAEVAKSGPGLAFIAYPEALAQMPLSPLWSGLFFFML  392 (629)
T ss_pred             ccCCcceeeeeeeeecccHHHHHHHHHHHHHHHHHHHHhCCcchhhccCCCCchhhhhhHHHHHhCcccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHhhhcccccchhhHHHHHhhhccccCCchhHHHHHHHHHHHhhcccccccccceehhhhhhhhhHHHHHHHHHHHhhh
Q psy15471        308 FVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSL  387 (550)
Q Consensus       308 ~~~gl~S~i~~~e~ivt~l~D~f~~l~~~r~~~~~~v~~~~fl~gl~~~t~~G~~~~~l~D~~~~~~~l~~~~~~e~i~v  387 (550)
                      +++|++|+++.+|+++|++.|+||++|++|+.+++.+|+++|++|++++|++|+|+++++|+|++++.+++++++|++++
T Consensus       393 ~~LG~~s~~~~ve~i~t~i~D~Fp~~~~~~~~~vl~vcv~~fllGl~~~t~~G~y~~~l~D~y~a~~~~~~~~~~e~~~i  472 (629)
T KOG3660|consen  393 LLLGLDSQFAIVETIVTAIVDEFPRLRNRRWIVVLFVCVVGFLLGLPLVTEGGIYWFQLFDYYAASWSLLFIAIFECFAI  472 (629)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHcchheecCcchhHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            99999999999999999999999976778888999999999999999999999999999999999999999999999999


Q ss_pred             hheeCccchhHHHHhhcC-CCCccccceeehhhhHHHHHHHHHHHHhhcccccCC-CccCchhhHhHhHHHHhhhhhHHH
Q psy15471        388 VWVYGLKNLCWDLKFMLK-FQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYE-NYDYPDWADGVGWCLACLSMCQIP  465 (550)
Q Consensus       388 ~wiYG~~rf~~di~~m~g-~~~~~~w~~~w~~v~P~~l~~i~v~~~i~~~p~~y~-~~~yP~w~~~iGw~l~~~~ll~Ip  465 (550)
                      +|+||.+|+++||++|+| .+++.||++||+++||++++++++++.++|+|.+|+ .|+||.|++.+||+++++|+++||
T Consensus       473 ~wiYG~~~~~~di~~M~g~~~~~~~~~~~W~f~tP~~~~~i~v~s~~~~~p~~y~~~~~yP~w~~~~Gw~~a~~~~~~iP  552 (629)
T KOG3660|consen  473 AWVYGADRFRDDIHEMIGCGRPSPYWKLCWKFVTPILLLGILVFSLVKYYPLKYNKVYVYPPWGDIVGWLVALSPLLVIP  552 (629)
T ss_pred             hheecccchHhhHHHHhCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHhccCccCCcCCCCccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999 999999999999999999999999999999999999 899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHhhhccCCCCCCchhhccCChhh
Q psy15471        466 FWALVVVLRAKGSSLKQKFLNAISPTEDWGPALRAKGSSLK  506 (550)
Q Consensus       466 ~~ai~~~~~~~g~~~~~r~~~~~~p~~~w~p~~~~~~~~~~  506 (550)
                      ++|+++++|.++++++||++..++|+++|+|++++...+.+
T Consensus       553 ~~ai~~~~~~~~~~~~~R~~~~~~p~~~~~~~~~~~~~~~~  593 (629)
T KOG3660|consen  553 LYAIIQILRAKGTKLKERIKFLLRPLSDWGPRDAEAPPEER  593 (629)
T ss_pred             HHHHHHHHHccCCcHHHHHHHHhcCCcccCCccccccchhh
Confidence            99999999999987999999999999999999987654433

>KOG3659|consensus Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query550
3f3a_A508 Crystal Structure Of Leut Bound To L-Tryptophan And 1e-14
3mpq_A507 I204r1 Mutant Of Leut Length = 507 3e-14
3mpn_A507 F177r1 Mutant Of Leut Length = 507 9e-14
3gjc_A513 Crystal Structure Of The E290s Mutant Of Leut With 2e-13
3qs4_A519 Crystal Structure Of Leut Mutant F259v Bound To Sod 4e-13
2qju_A511 Crystal Structure Of An Nss Homolog With Bound Anti 4e-13
3gjd_A515 Crystal Structure Of Leut With Bound Og Length = 51 4e-13
3f3d_A517 Crystal Structure Of Leut Bound To L-Methionine And 4e-13
2a65_A519 Crystal Structure Of Leutaa, A Bacterial Homolog Of 5e-13
3tt1_A519 Crystal Structure Of Leut In The Outward-Open Confo 8e-13
3qs6_A519 Crystal Structure Of Leut Mutant F259v,I359q Bound 9e-13
3qs5_A519 Crystal Structure Of Leut Mutant I359q Bound To Sod 1e-12
3tu0_A519 Crystal Structure Of T355v, S354a, K288a Leut Mutan 1e-12
4fxz_A513 Crystal Structure Of Leut-F253a Bound To L-Leucine 5e-12
3tt3_A519 Crystal Structure Of Leut In The Inward-Open Confor 1e-11
>pdb|3MPQ|A Chain A, I204r1 Mutant Of Leut Length = 507 Back     alignment and structure
>pdb|3MPN|A Chain A, F177r1 Mutant Of Leut Length = 507 Back     alignment and structure
>pdb|3GJC|A Chain A, Crystal Structure Of The E290s Mutant Of Leut With Bound Og Length = 513 Back     alignment and structure
>pdb|3QS4|A Chain A, Crystal Structure Of Leut Mutant F259v Bound To Sodium And L- Tryptophan Length = 519 Back     alignment and structure
>pdb|2QJU|A Chain A, Crystal Structure Of An Nss Homolog With Bound Antidepressant Length = 511 Back     alignment and structure
>pdb|3GJD|A Chain A, Crystal Structure Of Leut With Bound Og Length = 515 Back     alignment and structure
>pdb|2A65|A Chain A, Crystal Structure Of Leutaa, A Bacterial Homolog Of Na+/cl--dependent Neurotransmitter Transporters Length = 519 Back     alignment and structure
>pdb|3TT1|A Chain A, Crystal Structure Of Leut In The Outward-Open Conformation In Complex With Fab Length = 519 Back     alignment and structure
>pdb|3QS6|A Chain A, Crystal Structure Of Leut Mutant F259v,I359q Bound To Sodium And L- Tryptophan Length = 519 Back     alignment and structure
>pdb|3QS5|A Chain A, Crystal Structure Of Leut Mutant I359q Bound To Sodium And L- Tryptophan Length = 519 Back     alignment and structure
>pdb|3TU0|A Chain A, Crystal Structure Of T355v, S354a, K288a Leut Mutant In Complex With Alanine And Sodium Length = 519 Back     alignment and structure
>pdb|4FXZ|A Chain A, Crystal Structure Of Leut-F253a Bound To L-Leucine From Lipid Bicelles Length = 513 Back     alignment and structure
>pdb|3TT3|A Chain A, Crystal Structure Of Leut In The Inward-Open Conformation In Complex With Fab Length = 519 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query550
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 6e-61
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Length = 519 Back     alignment and structure
 Score =  208 bits (532), Expect = 6e-61
 Identities = 101/475 (21%), Positives = 179/475 (37%), Gaps = 44/475 (9%)

Query: 1   MLVLAGKPMYFLELAVGQFGGVGPLG-------LWNCCPIAKGVGVAMVTVSLIVCIYYN 53
             +L G P+ ++E A+G++GG    G       L      AK +GV  + + L+V IYY 
Sbjct: 50  AFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYV 109

Query: 54  VIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESATR 113
            I S+TL +    L   VP    +    D      +    S                   
Sbjct: 110 YIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYS------------------- 150

Query: 114 KVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSG--KVVYFAATFPYVILVT 171
             + +  G E +        I   ++  + V  L++GI   G  +    A    +++ V 
Sbjct: 151 -YIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGIS-KGIERFAKIAMPTLFILAVF 208

Query: 172 LLVTGLLQD----GAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSY 227
           L++   L +     A  G+ +  TP +EKL D  VW AA GQ+FF+LS+  G +I Y+SY
Sbjct: 209 LVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASY 268

Query: 228 NDFSNNVYRDALVVSVMDTITSIMSG--IVTFSILGAMAHDLNVPINQVVKEGPGLAFVA 285
                ++    L  + ++    ++ G  I   + +        V I         L F+ 
Sbjct: 269 VRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIA--KAGAFNLGFIT 326

Query: 286 YPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTA 345
            P    +         L+F +LF  GL S  A+++ ++  + DE  + R       + TA
Sbjct: 327 LPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRK---HAVLWTA 383

Query: 346 LVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLK 405
            + +      +    N  L  MD + G   V+F  + E +   W++G      ++     
Sbjct: 384 AIVFFSAHLVM--FLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGI 441

Query: 406 FQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDW-ADGVGWCLACL 459
            +    + +   +  P  LA + +     + P   E   +  W        L   
Sbjct: 442 IKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLF 496
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query550
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 100.0
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 95.88
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 95.82
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 94.62
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 92.84
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
Probab=100.00  E-value=2.7e-96  Score=796.78  Aligned_cols=429  Identities=22%  Similarity=0.340  Sum_probs=400.3

Q ss_pred             EEEehhHHHHHHHHHHH----hcCCCccccc-ccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--
Q psy15471          2 LVLAGKPMYFLELAVGQ----FGGVGPLGLW-NCCPI--AKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVP--   72 (550)
Q Consensus         2 l~~~GiPl~~lE~~lGQ----~~~~g~i~~~-~~~P~--~kGiG~~~~~~~~~i~~YY~vi~aw~l~Y~~~sf~~~lp--   72 (550)
                      ++++|+|++++|+++||    ++|+|++++| |++|.  +||+|++++++++++++||++++||+++|+++|+++++|  
T Consensus        51 l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~  130 (519)
T 2a65_A           51 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEP  130 (519)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHHhcccchhccCCCHHHHHHHhcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            56789999999999999    8888999999 57766  999999999999999999999999999999999999999  


Q ss_pred             CCCCCCCCCCcccccccccccccccccCchhhhhhhhhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHHhccc-
Q psy15471         73 WSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGI-  151 (550)
Q Consensus        73 W~~C~~~wnt~~~C~~~~~n~~~~~~~s~~~~~~~~~ff~~~vL~~s~~~~~~g~~~w~l~~~l~~~w~iv~~~~~kGv-  151 (550)
                      |++|++     ++|           ..+|     ++|||+ ++++.+++++|.|.++|++++|++++|++++++++||+ 
T Consensus       131 w~~~~~-----~~~-----------~~~~-----~~~~f~-~~l~~~~~~~~~g~~~~~~~~~~~~~w~i~~~ii~~Gv~  188 (519)
T 2a65_A          131 PPNATD-----PDS-----------ILRP-----FKEFLY-SYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGIS  188 (519)
T ss_dssp             CC--CC-----HHH-----------HHHH-----HHHHHH-HHHTCCSSSSCBCCCCHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             ccccCC-----ccc-----------ccCc-----HHHHHH-HHHCCCCCcccccCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence            664321     111           1235     677886 46888889999999999999999999999999999999 


Q ss_pred             cccccchhhhhhhHHHHHHHHHhhhccccc----ccccceeeeecCcccccchHHHHHHHHHHHHHhhcccchhhhcccc
Q psy15471        152 KTSGKVVYFAATFPYVILVTLLVTGLLQDG----AISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSY  227 (550)
Q Consensus       152 k~~GKv~~~~~~~p~v~l~il~ir~ltL~g----a~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ig~G~li~~aSy  227 (550)
                      |..||++|+++|+|++++++|++|++||||    |.+|++||++|||+||.|+++|.+|++|+|||||+|+|++++||||
T Consensus       189 kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~A~gQ~FFSLslG~G~~ity~SY  268 (519)
T 2a65_A          189 KGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASY  268 (519)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHHHHHHHHHHTTTSSHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHHHHHHHHHHhHHHHhHHhhhhcc
Confidence            779999999999999999999999999999    9999999999999999999999999999999999999999999999


Q ss_pred             ccCCCccccceeehhHHHHHHHHHHHHHHHHHHHHHHhhcCCC-ccccccCC-CceEeehhHHHHhcCCCchHHHHHHHH
Q psy15471        228 NDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVP-INQVVKEG-PGLAFVAYPEALLRLPFPQLWSILFFL  305 (550)
Q Consensus       228 n~~~~n~~rda~~v~~~n~~~silag~~ifs~lG~~a~~~~~~-v~~v~~~G-~~L~Fi~~P~a~~~~p~~~lws~lFF~  305 (550)
                      ||+|||+.|||+++++.|+++|++||++||+.+||+|  +|+| ++|++++| |||+|++||+++++||++++|+++||+
T Consensus       269 ~~~~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a--~g~~~~~~v~~~G~pgL~Fi~~P~af~~mp~g~~~~~lFF~  346 (519)
T 2a65_A          269 VRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAF--FGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFF  346 (519)
T ss_dssp             SCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH--HCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHHHHHHHHH
T ss_pred             cCCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcchHHHhcCCCCceeHHHHHHHHHhCCCccchHHHHHH
Confidence            9999999999999999999999999999999999998  5777 77788899 999999999999999999999999999


Q ss_pred             HHHHHhhhcccccchhhHHHHHhhhccccCCchhHHHHHHHHHHHhhccccccc-ccceehhhhhhhhhHHHHHHHHHHH
Q psy15471        306 MLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVTHG-GNYVLTLMDVYGGGTAVLFIAIFEC  384 (550)
Q Consensus       306 ~l~~~gl~S~i~~~e~ivt~l~D~f~~l~~~r~~~~~~v~~~~fl~gl~~~t~~-G~~~~~l~D~~~~~~~l~~~~~~e~  384 (550)
                      |++++|++|+++++|+++++++|+++.   +|++++..+|++++++|+|++|++ |   +|++|++++++.+++++++|+
T Consensus       347 ~l~~agltS~i~~~E~~vt~l~D~~~~---~R~~~~~~v~~~~fllgl~~~~~~~g---~~~~D~~~~~~~l~~~~l~~~  420 (519)
T 2a65_A          347 LLFFAGLTSSIAIMQPMIAFLEDELKL---SRKHAVLWTAAIVFFSAHLVMFLNKS---LDEMDFWAGTIGVVFFGLTEL  420 (519)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHHHHHBTTH---HHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHhHHHHHHhhCC---cHHHHHHHHHHHHHHHHHHHHcCCCC---cchHHHHHhHHHHHHHHHHHH
Confidence            999999999999999999999999963   577788999999999999999998 8   999999999999999999999


Q ss_pred             hhhhheeCccchhHHHHhhcCCCCccccceeehhhhHHHHHHHHHHHHhhcccccCCCccCchhhHhHhHHHHhhhhhH
Q psy15471        385 VSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQ  463 (550)
Q Consensus       385 i~v~wiYG~~rf~~di~~m~g~~~~~~w~~~w~~v~P~~l~~i~v~~~i~~~p~~y~~~~yP~w~~~iGw~l~~~~ll~  463 (550)
                      ++++|+||.+|+++|+++|.|++++.+|++||||++|++++++++++++++.|.+|++|+||.|.   ||++++++++.
T Consensus       421 i~v~wv~g~~~~~~~i~~~~~~~~~~~w~~~~~~v~P~~l~~i~~~~~~~~~~~~y~~y~~~~~~---Gw~~~~~~~i~  496 (519)
T 2a65_A          421 IIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWI---TRFYIIGLFLF  496 (519)
T ss_dssp             HHHHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHHHHHHHTHHHHHHSSCTTHHH---HHHHHHHHHHH
T ss_pred             HhhheeeehhHHHHHHHcccCCchHHHHHHeEEehHHHHHHHHHHHHHHhCcCCCCCCccCccHH---HHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999995   99999886544
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 550
d2a65a1509 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporte 7e-72
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Length = 509 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

 Score =  236 bits (603), Expect = 7e-72
 Identities = 96/479 (20%), Positives = 173/479 (36%), Gaps = 32/479 (6%)

Query: 1   MLVLAGKPMYFLELAVGQFGGVGPLGLWN-------CCPIAKGVGVAMVTVSLIVCIYYN 53
             +L G P+ ++E A+G++GG    G              AK +GV  + + L+V IYY 
Sbjct: 46  AFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYV 105

Query: 54  VIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESATR 113
            I S+TL +    L   VP    +    D      +    S   V      I +      
Sbjct: 106 YIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAY 165

Query: 114 KVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLL 173
            V                  I + ++  +++  + KGI+   K+         V LV  +
Sbjct: 166 IVF----------------LITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRV 209

Query: 174 VT-GLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSN 232
                    A  G+ +  TP +EKL D  VW AA GQ+FF+LS+  G +I Y+SY     
Sbjct: 210 FLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQ 269

Query: 233 NVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLR 292
           ++    L  + ++    ++ G             +   +         L F+  P    +
Sbjct: 270 DIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQ 329

Query: 293 LPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIG 352
                    L+F +LF  GL S  A+++ ++  + DE  + R H + +          + 
Sbjct: 330 TAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLV 389

Query: 353 LSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYW 412
           +       N  L  MD + G   V+F  + E +   W++G      ++      +    +
Sbjct: 390 M-----FLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIY 444

Query: 413 RFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWAD---GVGWCLACLSMCQIPFWA 468
            +   +  P  LA + +     + P   E   +  W      +G  L    +  +    
Sbjct: 445 YYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAERR 503

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query550
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 100.0
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=1.6e-80  Score=677.44  Aligned_cols=442  Identities=21%  Similarity=0.309  Sum_probs=375.1

Q ss_pred             EEEehhHHHHHHHHHHHhcCCCccccccc-------cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q psy15471          2 LVLAGKPMYFLELAVGQFGGVGPLGLWNC-------CPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWS   74 (550)
Q Consensus         2 l~~~GiPl~~lE~~lGQ~~~~g~i~~~~~-------~P~~kGiG~~~~~~~~~i~~YY~vi~aw~l~Y~~~sf~~~lpW~   74 (550)
                      ++++|+|++++|+++||++|+||+++||.       .|++||+|++++++++++++||+++++|+++|+++|+++++||+
T Consensus        47 l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~~~~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s~~~~lp~~  126 (509)
T d2a65a1          47 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEP  126 (509)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhccCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence            56899999999999999999999999974       58899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccccccccccccccCchhhhhhhhhhhhhcccccCCCCCccch----hHHHHHHHHHHHHHHHHHHhcc
Q psy15471         75 KCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESATRKVLKLSDGIENLGPV----KTDLAICLAVSWIVVVLCLMKG  150 (550)
Q Consensus        75 ~C~~~wnt~~~C~~~~~n~~~~~~~s~~~~~~~~~ff~~~vL~~s~~~~~~g~~----~w~l~~~l~~~w~iv~~~~~kG  150 (550)
                      .|++++++  +|            .+|     .+||+++.+...++ .++.+..    ...++++++++|.+++.++.||
T Consensus       127 ~~~~~~~~--~~------------~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~i~~~gi~kG  186 (509)
T d2a65a1         127 PPNATDPD--SI------------LRP-----FKEFLYSYIGVPKG-DEPILKPSLFAYIVFLITMFINVSILIRGISKG  186 (509)
T ss_dssp             CC--CCHH--HH------------HHH-----HHHHHHHHHTCCSS-SSCBCCCCHHHHHHHHHHHHHHHHHHTTCTTTT
T ss_pred             cccccCcc--cc------------ccc-----hHHHHHhhhccccC-CCccccchHHHHHHHHHHHHHHHHHHhhcccch
Confidence            99876542  22            245     67888776654432 2222222    2234567778888888888899


Q ss_pred             ccccccchhhhhhhHHHHHHHHHhhhcccc-cccccceeeeecCcccccchHHHHHHHHHHHHHhhcccchhhhcccccc
Q psy15471        151 IKTSGKVVYFAATFPYVILVTLLVTGLLQD-GAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYND  229 (550)
Q Consensus       151 vk~~GKv~~~~~~~p~v~l~il~ir~ltL~-ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ig~G~li~~aSyn~  229 (550)
                      +|+.||+.+.+..+|++++++.+.+..+++ ||.+|++|+++|||++|.|+++|.||++|+|||+|+|+|++++||||||
T Consensus       187 i~~~~kv~~~~l~~~~~~l~i~~~~l~~~~gga~~gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSlgiG~G~~i~~~Sy~~  266 (509)
T d2a65a1         187 IERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVR  266 (509)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSC
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHhhhccCCCHHHhcChHHHHHHHHHHhhhhcccCCceeeehhhcc
Confidence            998999877666555555544444443444 6999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccceeehhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCCceEeehhHHHHhcCCCchHHHHHHHHHHHH
Q psy15471        230 FSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQLWSILFFLMLFV  309 (550)
Q Consensus       230 ~~~n~~rda~~v~~~n~~~silag~~ifs~lG~~a~~~~~~v~~v~~~G~~L~Fi~~P~a~~~~p~~~lws~lFF~~l~~  309 (550)
                      +|||+.|||++++..|+.+|+++|.+++...|+++.....+.++...+|++|+|++||+++++||.+++|+++||+|+++
T Consensus       267 ~~~n~~rda~~v~~~~~~~si~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~L~Fv~~P~~fs~~~~~~~~~~lFF~~l~~  346 (509)
T d2a65a1         267 KDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFF  346 (509)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred             chhhhcccceEEEecccceeeccccchhhhhheeeeccccccccccccCCCchhhhhHHHhhcCCcchhHHHHHHHHHHH
Confidence            99999999999999999999999998888877766644444444556899999999999999999999999999999999


Q ss_pred             HhhhcccccchhhHHHHHhhhccccCCchhHHHHHHHHHHHhhcccccccccceehhhhhhhhhHHHHHHHHHHHhhhhh
Q psy15471        310 LGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVW  389 (550)
Q Consensus       310 ~gl~S~i~~~e~ivt~l~D~f~~l~~~r~~~~~~v~~~~fl~gl~~~t~~G~~~~~l~D~~~~~~~l~~~~~~e~i~v~w  389 (550)
                      +|++|+++++|++++.+.|+++.  +||+..++.+|+++++.++++++++|   ++++|++++++++++++++|+++++|
T Consensus       347 ~gl~s~i~~~e~~v~~l~d~~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~D~~~~~~~l~~~~l~e~i~v~w  421 (509)
T d2a65a1         347 AGLTSSIAIMQPMIAFLEDELKL--SRKHAVLWTAAIVFFSAHLVMFLNKS---LDEMDFWAGTIGVVFFGLTELIIFFW  421 (509)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHHHHHHHHHBTTH---HHHHHHHTTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhccccchhHHHHHhcCC--chhhhhhheeEEEEhhhhHHHHhcch---HHHHHHHHHHHHHHHHHHHHHheeee
Confidence            99999999999999999999974  24555677888889999999999988   57889999999999999999999999


Q ss_pred             eeCccchhHHHHhhcCCCCccccceeehhhhHHHHHHHHHHHHhhcccccCCCccCchhhHhHhHHHHhhhhhHHHHHHH
Q psy15471        390 VYGLKNLCWDLKFMLKFQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQIPFWAL  469 (550)
Q Consensus       390 iYG~~rf~~di~~m~g~~~~~~w~~~w~~v~P~~l~~i~v~~~i~~~p~~y~~~~yP~w~~~iGw~l~~~~ll~Ip~~ai  469 (550)
                      +||.||+++|+++|.|.+++.+|+++|||++|+++++++++++++++|.+|++++||.|+. .+|.+.....+.++++..
T Consensus       422 ~yg~~r~~~di~~~~~~~~~~~~~~~~~~i~Pi~l~~ili~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~i~  500 (509)
T d2a65a1         422 IFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWIT-RFYIIGLFLFLTFLVFLA  500 (509)
T ss_dssp             TSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHHHHHHHTHHHHHHSSCTTHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             EecHHHHHHHHHhCCCCCHHHHHHHheeeeeHhhhhheeehhHhhccccccCCcCCchHHH-HHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999974 344455555555555543