Psyllid ID: psy15483
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 830 | 2.2.26 [Sep-21-2011] | |||||||
| Q9GJT6 | 620 | Sodium-dependent dopamine | N/A | N/A | 0.315 | 0.422 | 0.524 | 6e-81 | |
| Q01959 | 620 | Sodium-dependent dopamine | yes | N/A | 0.313 | 0.419 | 0.523 | 7e-81 | |
| P23977 | 619 | Sodium-dependent dopamine | yes | N/A | 0.314 | 0.421 | 0.527 | 4e-79 | |
| Q61327 | 619 | Sodium-dependent dopamine | yes | N/A | 0.316 | 0.424 | 0.524 | 6e-79 | |
| O55192 | 617 | Sodium-dependent noradren | no | N/A | 0.278 | 0.374 | 0.56 | 8e-78 | |
| P27922 | 693 | Sodium-dependent dopamine | yes | N/A | 0.332 | 0.398 | 0.493 | 1e-77 | |
| P51143 | 615 | Sodium-dependent noradren | yes | N/A | 0.289 | 0.390 | 0.544 | 1e-77 | |
| P23975 | 617 | Sodium-dependent noradren | no | N/A | 0.278 | 0.374 | 0.564 | 2e-77 | |
| Q9MYX0 | 630 | Sodium-dependent serotoni | no | N/A | 0.281 | 0.371 | 0.512 | 5e-74 | |
| Q9XT49 | 630 | Sodium-dependent serotoni | no | N/A | 0.281 | 0.371 | 0.524 | 7e-74 |
| >sp|Q9GJT6|SC6A3_MACFA Sodium-dependent dopamine transporter OS=Macaca fascicularis GN=SLC6A3 PE=2 SV=1 | Back alignment and function desciption |
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Score = 302 bits (774), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 152/290 (52%), Positives = 193/290 (66%), Gaps = 28/290 (9%)
Query: 26 PEEVE---VRLESGTEDKYELYVLNVDSKKSSKQEFEHPDGRETWGSNADFLLSIIGFAV 82
P+EVE V+ ++G + L + + +Q RETWG DFLLS+IGFAV
Sbjct: 26 PKEVELILVKEQNGVQ-------LTSSTLTNPRQSPVEAQDRETWGKKIDFLLSVIGFAV 78
Query: 83 DLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELILGQFNRQGPISVWRICPLF 142
DLANVWRFPYLCYKNGGGAFLVPY L +V +PLFYMEL LGQFNR+G VW+ICP+
Sbjct: 79 DLANVWRFPYLCYKNGGGAFLVPYLLFMVIAGMPLFYMELALGQFNREGAAGVWKICPVL 138
Query: 143 KGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWLNCNNTWNTPLCEDTYNRTNG 202
KGVGF +L++ YV F+YNVII WAL++LF+S T+ELPW++CNN+WN+P C D ++ +G
Sbjct: 139 KGVGFTVILISLYVGFFYNVIIAWALHYLFSSFTTELPWIHCNNSWNSPNCSDAHSGDSG 198
Query: 203 SS---------FTFYHYDFSRAVLEMQWSEGLHDMGYPKWSLVLCVFSVYCMLYLSLFKG 253
+ T F R VL + S G+ D+G P+W L C+ V +LY SL+KG
Sbjct: 199 GNGPGLNDTFGTTPAAEYFERGVLHLHQSHGIDDLGPPRWQLTACLVLVIVLLYFSLWKG 258
Query: 254 VKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQ 303
VK+SG KVVW TATMPYVVLT LL+RG+ LPGA+ GI YL
Sbjct: 259 VKTSG---------KVVWITATMPYVVLTALLLRGVTLPGAIDGIRAYLS 299
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Amine transporter. Terminates the action of dopamine by its high affinity sodium-dependent reuptake into presynaptic terminals. Macaca fascicularis (taxid: 9541) |
| >sp|Q01959|SC6A3_HUMAN Sodium-dependent dopamine transporter OS=Homo sapiens GN=SLC6A3 PE=1 SV=1 | Back alignment and function description |
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| >sp|P23977|SC6A3_RAT Sodium-dependent dopamine transporter OS=Rattus norvegicus GN=Slc6a3 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q61327|SC6A3_MOUSE Sodium-dependent dopamine transporter OS=Mus musculus GN=Slc6a3 PE=1 SV=2 | Back alignment and function description |
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| >sp|O55192|SC6A2_MOUSE Sodium-dependent noradrenaline transporter OS=Mus musculus GN=Slc6a2 PE=2 SV=2 | Back alignment and function description |
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| >sp|P27922|SC6A3_BOVIN Sodium-dependent dopamine transporter OS=Bos taurus GN=SLC6A3 PE=2 SV=1 | Back alignment and function description |
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| >sp|P51143|SC6A2_BOVIN Sodium-dependent noradrenaline transporter OS=Bos taurus GN=SLC6A2 PE=2 SV=1 | Back alignment and function description |
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| >sp|P23975|SC6A2_HUMAN Sodium-dependent noradrenaline transporter OS=Homo sapiens GN=SLC6A2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9MYX0|SC6A4_MACMU Sodium-dependent serotonin transporter OS=Macaca mulatta GN=SLC6A4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9XT49|SC6A4_BOVIN Sodium-dependent serotonin transporter OS=Bos taurus GN=SLC6A4 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 830 | ||||||
| 91087161 | 747 | PREDICTED: similar to high-affinity octo | 0.321 | 0.357 | 0.685 | 1e-106 | |
| 87448208 | 744 | high-affinity octopamine transporter [Tr | 0.336 | 0.375 | 0.627 | 3e-99 | |
| 124245551 | 745 | high-affinity octopamine transporter pro | 0.334 | 0.373 | 0.629 | 3e-99 | |
| 124245553 | 744 | high-affinity octopamine transporter pro | 0.295 | 0.329 | 0.690 | 3e-98 | |
| 242010352 | 666 | tryptophan transporter, putative [Pedicu | 0.319 | 0.397 | 0.613 | 1e-97 | |
| 328704903 | 794 | PREDICTED: sodium-dependent dopamine tra | 0.3 | 0.313 | 0.615 | 8e-93 | |
| 391327422 | 665 | PREDICTED: sodium-dependent noradrenalin | 0.287 | 0.359 | 0.622 | 8e-87 | |
| 242000572 | 702 | norepinephrine/norepinephrine transporte | 0.327 | 0.387 | 0.588 | 8e-84 | |
| 443696148 | 656 | hypothetical protein CAPTEDRAFT_176318 [ | 0.319 | 0.403 | 0.539 | 6e-82 | |
| 348512340 | 608 | PREDICTED: sodium-dependent dopamine tra | 0.316 | 0.432 | 0.548 | 1e-80 |
| >gi|91087161|ref|XP_975356.1| PREDICTED: similar to high-affinity octopamine transporter protein [Tribolium castaneum] | Back alignment and taxonomy information |
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Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 203/296 (68%), Positives = 229/296 (77%), Gaps = 29/296 (9%)
Query: 27 EEVEVRLESGTEDKYELYVLNVDSKKSSKQEFEHP----DGRETWGSNADFLLSIIGFAV 82
+++ V+LE E YE +VL+ S ++ + + + P D RETWGS+ADFLLSIIGFAV
Sbjct: 136 KDLHVQLEED-EKGYESFVLSTSSSQAGEVDPDSPTVPDDARETWGSSADFLLSIIGFAV 194
Query: 83 DLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELILGQFNRQGPISVWRICPLF 142
DLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELILGQFNRQGPIS+WRICPLF
Sbjct: 195 DLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELILGQFNRQGPISLWRICPLF 254
Query: 143 KGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWLNCNNTWNTPLCEDTY----- 197
KGVGFCAVLVAFYVSFYYNVII WALYFL S + +LPWL+CNNTWNT C ++
Sbjct: 255 KGVGFCAVLVAFYVSFYYNVIIAWALYFLGTSFSPDLPWLHCNNTWNTEKCWESMLPGAS 314
Query: 198 NRT------NGSSFTFYHYD----FSRAVLEMQWSEGLHDMGYPKWSLVLCVFSVYCMLY 247
N T N ++ T H F RAVLEMQWS+GLH+MGYPKW LVLC+ VY MLY
Sbjct: 315 NVTTRPPVFNDTTPTNRHTPASEFFHRAVLEMQWSDGLHEMGYPKWQLVLCLMIVYVMLY 374
Query: 248 LSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQ 303
+SLFKGVKSSG KVVW TATMPYVVLTILLIRGLMLPGA GI+YYL+
Sbjct: 375 ISLFKGVKSSG---------KVVWVTATMPYVVLTILLIRGLMLPGAAMGISYYLK 421
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Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|87448208|gb|AAL09578.2|AF388173_1 high-affinity octopamine transporter [Trichoplusia ni] | Back alignment and taxonomy information |
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| >gi|124245551|gb|AAZ08592.2| high-affinity octopamine transporter protein [Ostrinia nubilalis] | Back alignment and taxonomy information |
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| >gi|124245553|gb|AAZ08593.2| high-affinity octopamine transporter protein [Pieris rapae] | Back alignment and taxonomy information |
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| >gi|242010352|ref|XP_002425932.1| tryptophan transporter, putative [Pediculus humanus corporis] gi|212509915|gb|EEB13194.1| tryptophan transporter, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
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| >gi|328704903|ref|XP_001949303.2| PREDICTED: sodium-dependent dopamine transporter-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|391327422|ref|XP_003738199.1| PREDICTED: sodium-dependent noradrenaline transporter-like [Metaseiulus occidentalis] | Back alignment and taxonomy information |
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| >gi|242000572|ref|XP_002434929.1| norepinephrine/norepinephrine transporter, putative [Ixodes scapularis] gi|215498259|gb|EEC07753.1| norepinephrine/norepinephrine transporter, putative [Ixodes scapularis] | Back alignment and taxonomy information |
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| >gi|443696148|gb|ELT96928.1| hypothetical protein CAPTEDRAFT_176318 [Capitella teleta] | Back alignment and taxonomy information |
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| >gi|348512340|ref|XP_003443701.1| PREDICTED: sodium-dependent dopamine transporter [Oreochromis niloticus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 830 | ||||||
| ZFIN|ZDB-GENE-010316-1 | 629 | slc6a3 "solute carrier family | 0.280 | 0.370 | 0.600 | 1.7e-119 | |
| UNIPROTKB|Q9DGN5 | 635 | SLC6A2 "Transporter" [Gallus g | 0.280 | 0.366 | 0.575 | 8.2e-118 | |
| UNIPROTKB|Q01959 | 620 | SLC6A3 "Sodium-dependent dopam | 0.316 | 0.424 | 0.536 | 3.5e-117 | |
| MGI|MGI:94862 | 619 | Slc6a3 "solute carrier family | 0.275 | 0.369 | 0.588 | 1.2e-116 | |
| RGD|3715 | 619 | Slc6a3 "solute carrier family | 0.275 | 0.369 | 0.588 | 1.2e-116 | |
| FB|FBgn0034136 | 631 | DAT "Dopamine transporter" [Dr | 0.169 | 0.223 | 0.685 | 1.8e-116 | |
| RGD|621822 | 597 | Slc6a2 "solute carrier family | 0.277 | 0.385 | 0.578 | 2.4e-116 | |
| MGI|MGI:1270850 | 617 | Slc6a2 "solute carrier family | 0.277 | 0.372 | 0.574 | 2.4e-116 | |
| UNIPROTKB|F1LNR9 | 597 | Slc6a2 "Transporter" [Rattus n | 0.277 | 0.385 | 0.578 | 3.1e-116 | |
| UNIPROTKB|F1LQW0 | 567 | Slc6a2 "Transporter" [Rattus n | 0.277 | 0.405 | 0.578 | 3.1e-116 |
| ZFIN|ZDB-GENE-010316-1 slc6a3 "solute carrier family 6 (neurotransmitter transporter, dopamine), member 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Score = 785 (281.4 bits), Expect = 1.7e-119, Sum P(3) = 1.7e-119
Identities = 149/248 (60%), Positives = 180/248 (72%)
Query: 60 HPDG--RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPL 117
HP G RETWG DFLLS+IGFAVDLANVWRFPYLCYKNGGGAFLVPY L +V +PL
Sbjct: 70 HPSGQQRETWGKKIDFLLSVIGFAVDLANVWRFPYLCYKNGGGAFLVPYLLFMVIAGMPL 129
Query: 118 FYMELILGQFNRQGPISVWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTS 177
FYMEL LGQ+NR+G VW+ICP+FKGVGF +L++ YV YYNVII WAL++LF+S +
Sbjct: 130 FYMELALGQYNREGAAGVWKICPIFKGVGFTVILISLYVGSYYNVIIAWALFYLFSSFSG 189
Query: 178 ELPWLNCNNTWNTPLCEDTYNRT--NGSSFTFYHYD-FSRAVLEMQWSEGLHDMGYPKWS 234
ELPW++CNNTWN+P C D N T N + T + F R VL + S G+ D+G P+W
Sbjct: 190 ELPWIHCNNTWNSPNCSDP-NATLLNDTYKTTPALEYFERGVLHVHESSGIDDLGAPRWQ 248
Query: 235 LVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGA 294
L C+ V +LY SL+KGVK+SG KVVW TATMPYVVLT+LL+RG+ LPGA
Sbjct: 249 LTACLAVVIVVLYFSLWKGVKTSG---------KVVWITATMPYVVLTVLLLRGVTLPGA 299
Query: 295 LTGIAYYL 302
+ GI YL
Sbjct: 300 IDGIKAYL 307
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| UNIPROTKB|Q9DGN5 SLC6A2 "Transporter" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q01959 SLC6A3 "Sodium-dependent dopamine transporter" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| MGI|MGI:94862 Slc6a3 "solute carrier family 6 (neurotransmitter transporter, dopamine), member 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|3715 Slc6a3 "solute carrier family 6 (neurotransmitter transporter, dopamine), member 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| FB|FBgn0034136 DAT "Dopamine transporter" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| RGD|621822 Slc6a2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:1270850 Slc6a2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1LNR9 Slc6a2 "Transporter" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1LQW0 Slc6a2 "Transporter" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q61327 | SC6A3_MOUSE | No assigned EC number | 0.5243 | 0.3168 | 0.4248 | yes | N/A |
| Q01959 | SC6A3_HUMAN | No assigned EC number | 0.5239 | 0.3132 | 0.4193 | yes | N/A |
| P23977 | SC6A3_RAT | No assigned EC number | 0.5275 | 0.3144 | 0.4216 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 830 | |||
| cd11497 | 539 | cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen | 1e-132 | |
| cd11556 | 552 | cd11556, SLC6sbd_SERT-like_u1, uncharacterized sub | 1e-101 | |
| cd11513 | 537 | cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent | 1e-99 | |
| pfam00209 | 506 | pfam00209, SNF, Sodium:neurotransmitter symporter | 2e-98 | |
| cd11514 | 555 | cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent | 3e-97 | |
| cd11512 | 560 | cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent n | 1e-95 | |
| cd11496 | 543 | cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-depen | 1e-93 | |
| cd11500 | 544 | cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent | 5e-83 | |
| cd11509 | 592 | cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent c | 8e-73 | |
| cd11501 | 601 | cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent | 3e-71 | |
| cd10324 | 417 | cd10324, SLC6sbd, Solute carrier 6 family, neurotr | 8e-71 | |
| cd11510 | 542 | cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent | 1e-70 | |
| cd10332 | 565 | cd10332, SLC6sbd-B0AT-like, System B(0) neutral am | 1e-70 | |
| cd11511 | 541 | cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent | 3e-69 | |
| cd11498 | 585 | cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent | 4e-65 | |
| cd11506 | 598 | cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent | 6e-65 | |
| cd11507 | 544 | cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent | 2e-63 | |
| cd11499 | 606 | cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent | 5e-62 | |
| cd11508 | 542 | cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent | 5e-57 | |
| cd11518 | 576 | cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent | 8e-54 | |
| cd11517 | 576 | cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3 | 5e-53 | |
| cd11522 | 580 | cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-ch | 1e-51 | |
| cd11515 | 530 | cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurot | 2e-51 | |
| cd11521 | 589 | cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransm | 3e-51 | |
| cd11516 | 581 | cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral am | 3e-50 | |
| cd11502 | 543 | cd11502, SLC6sbd_NTT5, Neurotransmitter transporte | 2e-44 | |
| cd11497 | 539 | cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen | 3e-38 | |
| cd10334 | 480 | cd10334, SLC6sbd_u1, uncharacterized bacterial and | 4e-37 | |
| cd11513 | 537 | cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent | 4e-35 | |
| cd11554 | 406 | cd11554, SLC6sbd_u2, uncharacterized eukaryotic so | 6e-35 | |
| cd11496 | 543 | cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-depen | 5e-32 | |
| pfam00209 | 506 | pfam00209, SNF, Sodium:neurotransmitter symporter | 4e-31 | |
| cd10324 | 417 | cd10324, SLC6sbd, Solute carrier 6 family, neurotr | 1e-29 | |
| cd11511 | 541 | cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent | 1e-29 | |
| COG0733 | 439 | COG0733, COG0733, Na+-dependent transporters of th | 2e-29 | |
| cd11514 | 555 | cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent | 7e-29 | |
| cd11556 | 552 | cd11556, SLC6sbd_SERT-like_u1, uncharacterized sub | 2e-28 | |
| cd10336 | 439 | cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfa | 6e-28 | |
| cd11500 | 544 | cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent | 2e-26 | |
| cd11512 | 560 | cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent n | 3e-23 | |
| cd11509 | 592 | cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent c | 2e-21 | |
| cd11501 | 601 | cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent | 4e-21 | |
| cd11498 | 585 | cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent | 5e-21 | |
| cd11506 | 598 | cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent | 6e-21 | |
| cd11507 | 544 | cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent | 6e-21 | |
| cd11510 | 542 | cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent | 7e-21 | |
| cd11508 | 542 | cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent | 2e-20 | |
| cd11497 | 539 | cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen | 1e-19 | |
| cd11499 | 606 | cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent | 2e-18 | |
| cd10333 | 500 | cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and | 4e-18 | |
| cd10334 | 480 | cd10334, SLC6sbd_u1, uncharacterized bacterial and | 1e-17 | |
| cd11496 | 543 | cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-depen | 8e-16 | |
| cd11497 | 539 | cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen | 1e-15 | |
| cd11513 | 537 | cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent | 2e-15 | |
| pfam00209 | 506 | pfam00209, SNF, Sodium:neurotransmitter symporter | 5e-15 | |
| cd11496 | 543 | cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-depen | 1e-14 | |
| cd11556 | 552 | cd11556, SLC6sbd_SERT-like_u1, uncharacterized sub | 7e-14 | |
| cd11512 | 560 | cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent n | 9e-14 | |
| cd10324 | 417 | cd10324, SLC6sbd, Solute carrier 6 family, neurotr | 3e-13 | |
| cd11556 | 552 | cd11556, SLC6sbd_SERT-like_u1, uncharacterized sub | 7e-13 | |
| cd10332 | 565 | cd10332, SLC6sbd-B0AT-like, System B(0) neutral am | 1e-12 | |
| cd11500 | 544 | cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent | 2e-12 | |
| cd11554 | 406 | cd11554, SLC6sbd_u2, uncharacterized eukaryotic so | 3e-12 | |
| cd11511 | 541 | cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent | 5e-12 | |
| cd11509 | 592 | cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent c | 6e-12 | |
| pfam00209 | 506 | pfam00209, SNF, Sodium:neurotransmitter symporter | 1e-11 | |
| cd11514 | 555 | cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent | 2e-11 | |
| cd11507 | 544 | cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent | 2e-11 | |
| cd11510 | 542 | cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent | 3e-11 | |
| cd10332 | 565 | cd10332, SLC6sbd-B0AT-like, System B(0) neutral am | 5e-11 | |
| cd11508 | 542 | cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent | 1e-10 | |
| cd11512 | 560 | cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent n | 2e-10 | |
| cd11509 | 592 | cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent c | 2e-10 | |
| cd11498 | 585 | cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent | 2e-10 | |
| cd11497 | 539 | cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen | 5e-10 | |
| cd11501 | 601 | cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent | 6e-10 | |
| cd11510 | 542 | cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent | 6e-10 | |
| cd11498 | 585 | cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent | 7e-10 | |
| COG0733 | 439 | COG0733, COG0733, Na+-dependent transporters of th | 7e-10 | |
| cd11500 | 544 | cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent | 2e-09 | |
| cd11506 | 598 | cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent | 3e-09 | |
| cd11499 | 606 | cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent | 3e-09 | |
| cd11507 | 544 | cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent | 1e-08 | |
| cd11517 | 576 | cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3 | 1e-08 | |
| cd11496 | 543 | cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-depen | 2e-08 | |
| cd11508 | 542 | cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent | 2e-08 | |
| cd11518 | 576 | cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent | 4e-08 | |
| cd10324 | 417 | cd10324, SLC6sbd, Solute carrier 6 family, neurotr | 5e-08 | |
| cd11514 | 555 | cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent | 7e-08 | |
| pfam00209 | 506 | pfam00209, SNF, Sodium:neurotransmitter symporter | 2e-07 | |
| cd11556 | 552 | cd11556, SLC6sbd_SERT-like_u1, uncharacterized sub | 3e-07 | |
| cd11516 | 581 | cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral am | 3e-07 | |
| cd11502 | 543 | cd11502, SLC6sbd_NTT5, Neurotransmitter transporte | 3e-07 | |
| cd11506 | 598 | cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent | 1e-06 | |
| cd11506 | 598 | cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent | 1e-06 | |
| cd11518 | 576 | cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent | 1e-06 | |
| cd10336 | 439 | cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfa | 1e-06 | |
| cd11507 | 544 | cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent | 4e-06 | |
| cd11515 | 530 | cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurot | 4e-06 | |
| cd11521 | 589 | cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransm | 4e-06 | |
| cd11499 | 606 | cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent | 1e-05 | |
| cd11497 | 539 | cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen | 2e-05 | |
| cd11512 | 560 | cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent n | 2e-05 | |
| cd11509 | 592 | cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent c | 2e-05 | |
| cd11510 | 542 | cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent | 2e-05 | |
| cd11517 | 576 | cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3 | 2e-05 | |
| cd11515 | 530 | cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurot | 2e-05 | |
| cd11554 | 406 | cd11554, SLC6sbd_u2, uncharacterized eukaryotic so | 3e-05 | |
| cd11513 | 537 | cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent | 4e-05 | |
| cd10332 | 565 | cd10332, SLC6sbd-B0AT-like, System B(0) neutral am | 5e-05 | |
| cd11511 | 541 | cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent | 6e-05 | |
| cd11508 | 542 | cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent | 7e-05 | |
| cd11500 | 544 | cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent | 1e-04 | |
| cd11522 | 580 | cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-ch | 1e-04 | |
| cd11521 | 589 | cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransm | 1e-04 | |
| cd11514 | 555 | cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent | 2e-04 | |
| cd11499 | 606 | cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent | 2e-04 | |
| cd11516 | 581 | cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral am | 2e-04 | |
| cd10334 | 480 | cd10334, SLC6sbd_u1, uncharacterized bacterial and | 5e-04 | |
| cd11522 | 580 | cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-ch | 7e-04 | |
| cd10336 | 439 | cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfa | 0.001 | |
| pfam00209 | 506 | pfam00209, SNF, Sodium:neurotransmitter symporter | 0.003 | |
| cd11501 | 601 | cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent | 0.003 | |
| cd11501 | 601 | cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent | 0.003 | |
| COG0733 | 439 | COG0733, COG0733, Na+-dependent transporters of th | 0.004 |
| >gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain | Back alignment and domain information |
|---|
Score = 403 bits (1038), Expect = e-132
Identities = 160/247 (64%), Positives = 187/247 (75%), Gaps = 17/247 (6%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RETWG ADFLLS+IGFAVDL NVWRFPY+CYKNGGGAFL+PY LML+FG +PLFYMEL
Sbjct: 1 RETWGKKADFLLSVIGFAVDLGNVWRFPYICYKNGGGAFLIPYLLMLIFGGLPLFYMELA 60
Query: 124 LGQFNRQGPISVW-RICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWL 182
LGQ++R G I+VW +ICP+FKGVG+ ++AFYV+FYYN II WALY+LF+S TSELPW
Sbjct: 61 LGQYHRSGCITVWRKICPIFKGVGYAICIIAFYVAFYYNTIIAWALYYLFSSFTSELPWT 120
Query: 183 NCNNTWNTPLCEDTYNRTNGSSFTFYHYDFS-------RAVLEMQWSEGLHDMGYPKWSL 235
+CNN WNTP C D NR N SS S R VLE+Q SEG+ D+G PKW L
Sbjct: 121 SCNNPWNTPNCTDVSNRNNSSSSNGTWTLHSPAEEFFERKVLELQKSEGIDDLGGPKWQL 180
Query: 236 VLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGAL 295
LC+F+V+ ++Y SL+KGVKSSG KVVW TATMPYVVL+ILLIRGL LPGA
Sbjct: 181 ALCLFAVFIIVYFSLWKGVKSSG---------KVVWVTATMPYVVLSILLIRGLTLPGAS 231
Query: 296 TGIAYYL 302
GI YYL
Sbjct: 232 DGIKYYL 238
|
This subgroup represents the solute-binding domain of transmembrane transporters that transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: NET which transports norepinephrine, SERT which transports serotonin, and DAT1 which transports dopamine. These transporters may play a role in diseases including depression, anxiety disorders, attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 539 |
| >gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family | Back alignment and domain information |
|---|
| >gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid transporter SIT1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter transporter 4, and related proteins; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter 4; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids transporter, B0AT1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6 subfamily; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family | Back alignment and domain information |
|---|
| >gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins; solute binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family | Back alignment and domain information |
|---|
| >gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6 subfamily; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family | Back alignment and domain information |
|---|
| >gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid transporter SIT1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family | Back alignment and domain information |
|---|
| >gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids transporter, B0AT1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid transporter SIT1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter transporter 4, and related proteins; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter 4; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter transporter 4, and related proteins; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6 subfamily; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter 4; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids transporter, B0AT1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family | Back alignment and domain information |
|---|
| >gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family [General function prediction only] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 830 | |||
| KOG3659|consensus | 629 | 100.0 | ||
| KOG3660|consensus | 629 | 100.0 | ||
| PF00209 | 523 | SNF: Sodium:neurotransmitter symporter family; Int | 100.0 | |
| COG0733 | 439 | Na+-dependent transporters of the SNF family [Gene | 100.0 | |
| KOG3660|consensus | 629 | 99.92 | ||
| KOG3659|consensus | 629 | 99.9 | ||
| COG0733 | 439 | Na+-dependent transporters of the SNF family [Gene | 99.07 | |
| PF00209 | 523 | SNF: Sodium:neurotransmitter symporter family; Int | 98.96 |
| >KOG3659|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-99 Score=850.29 Aligned_cols=479 Identities=46% Similarity=0.838 Sum_probs=441.7
Q ss_pred CCCCCCCchhHHHHHHHHhhhcCCceeecceeeeccCceeehHhHHHHHHHHhHHHHHHHHHHhhccCCCccccc-cccc
Q psy15483 62 DGRETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELILGQFNRQGPISVW-RICP 140 (830)
Q Consensus 62 ~~R~~W~sk~~FiLa~iG~AVGLGNiWRFPyl~~~nGGGAFLIpYli~l~~iGiPll~lElalGQ~~r~g~i~aw-~l~P 140 (830)
+.||+|++|+||+||++|+||+|||+|||||+|++||||||++||++|+++.|+||+|||+++|||.|+|++++| |+||
T Consensus 76 e~R~~W~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~g~~gvw~ri~P 155 (629)
T KOG3659|consen 76 EQRPTWGSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQGCIGVWRRIAP 155 (629)
T ss_pred ccCCcchhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcccchhHHHHhCH
Confidence 349999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CccccchhhHHHHHhhhhhhHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCccccccccCCC----CCcccchHHHHHHhh
Q psy15483 141 LFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWLNCNNTWNTPLCEDTYNRTN----GSSFTFYHYDFSRAV 216 (830)
Q Consensus 141 ~~~GvG~~~vl~~~li~~YY~VIiaW~l~Y~~~Sf~~~LPW~~C~~~wn~~~C~~~~~~~~----~~~~s~~~~ff~~~v 216 (830)
.++|+|++++++++++..|||+|++|+++|++.||++++||++|+|+||+++|.++....+ ....+|+++||++.+
T Consensus 156 ~l~Gigy~i~~i~~~~~~yyn~i~aWA~~yl~~sft~~lPW~sC~~s~n~~~C~~~~~s~~~~~~~ek~s~a~ef~~r~~ 235 (629)
T KOG3659|consen 156 ALKGIGYAICLIAFFVGLYYNVIIAWALYYLFTSFTSNLPWESCPNSWNGPNCFDPTWSKNCDEECEKTSPAQEFWYRKV 235 (629)
T ss_pred HhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhCCCcccCCCccCccccccCchhhhccchhHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999998642222 234678999999999
Q ss_pred hhccccCCCCCCcchhHHHHHHHHHHHHhhheeeeccccccccccccccccceeeehhhhhHHHHhhheeecccCcchhh
Q psy15483 217 LEMQWSEGLHDMGYPKWSLVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGALT 296 (830)
Q Consensus 217 L~~~~s~gi~~~g~i~w~l~l~~ll~~~iv~~gv~kGIk~~~~~~~~~~~~Kv~~~~~lmP~vlliiL~irsltLpGA~~ 296 (830)
|+.+++++++|.|++.|.+.+|.+++|++++..+.||+|++
T Consensus 236 l~l~~~~~~~d~g~~~~~~~lc~~lv~~liyf~~~kG~kss--------------------------------------- 276 (629)
T KOG3659|consen 236 LGLSESHGLDDLGGPSWTLALCLVLVWLLIYFSLWKGVKSS--------------------------------------- 276 (629)
T ss_pred ccccccccccccCCCchHHHHHHHHHHHHHHHHHhcccccc---------------------------------------
Confidence 99988888999999999999999999999999999999998
Q ss_pred hHhhhcccCCCCCCCCcccccccccccceeeeeccccCeeeeeecchhHHHHHHHHHHhccccchhhhhhhccccCcccc
Q psy15483 297 GIAYYLQQPAPSSLPGNLVTTAPLRQVPTFISFDIISGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRL 376 (830)
Q Consensus 297 Gl~flf~~Pd~s~L~~~~vW~aA~gQ~ity~Sy~~~~g~~i~~~~~~p~vil~i~~i~gl~l~~a~~~l~~~~~p~~~~~ 376 (830)
||+++++++.|++++.++++||++++|+..|+.++.+||++++
T Consensus 277 -------------------------------------GKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl 319 (629)
T KOG3659|consen 277 -------------------------------------GKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKL 319 (629)
T ss_pred -------------------------------------ceEEeeehhhHHHHHHHHHHhcccccccccchhheecccHHHH
Confidence 8888888888888888888888888888888889999999999
Q ss_pred cCccceeeecccccccCCCceeEeecchhhhcccccccccccccccccccchhhhcccchhHHHHHHHHHHhhccCCCCC
Q psy15483 377 KETQVKFISLNYLSVQGNTGVERCSRPDFLLCWGRIWCSRFRVHLADHCTTEELSLSLTPLCWCLVLFPCFTWNSFSDSS 456 (830)
Q Consensus 377 ~~~~~w~~a~~~~~~q~~~gl~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfF~~~~~~~~~~~~ 456 (830)
+++.+|.|| ++|
T Consensus 320 ~~~~vW~dA----Atq---------------------------------------------------------------- 331 (629)
T KOG3659|consen 320 KEPSVWIDA----ATQ---------------------------------------------------------------- 331 (629)
T ss_pred hhHHHHHHH----HHH----------------------------------------------------------------
Confidence 999999999 999
Q ss_pred CCCCCCccceeeeeeccchhhHHHHhhhhhhhccccCCCCcccceeehhhhhhhhhhhccccccchhhhHhhhhcCCCCC
Q psy15483 457 TDKGPSVFGEFVLYSKMGGLECVITGLMDEFRVYFKGYPHAREIFTCCAIAVSFSVAMINVTPVHEHLTELQRQDNLSPS 536 (830)
Q Consensus 457 ~~~~~~~~~~~~~~S~~~~~e~~i~~l~d~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 536 (830)
+++|+..+. |++..++||| ++||
T Consensus 332 -----------iffslg~Gf------------------------------G~L~AfaSyn--~F~N-------------- 354 (629)
T KOG3659|consen 332 -----------IFFSLGPGF------------------------------GVLIAFASYN--KFHN-------------- 354 (629)
T ss_pred -----------HHhhcCccc------------------------------hhhhhhhhhc--cccc--------------
Confidence 889999998 9999999999 9999
Q ss_pred CCceeeeEEEeccchhhccccceEEEEeccccccc---ccCCccc-cccCCCcEEEehhHHHHHhCCCcchHHHHHHHHH
Q psy15483 537 SITFRDCIITSLVNCFTSFFSGFVIFTYLGYMSFK---QKIPISR-VATDGPGLVFQVYPEAVATLPASNVWSMLFFFML 612 (830)
Q Consensus 537 ~~~~~d~~~~~~~~~~~~~~~~~~if~~~g~~~~~---~~~~~~~-~~~~g~gl~fi~~~~~~~~~p~~~~~~~~ff~~l 612 (830)
|+.||+++++.+|+++++++|+++|+++|||+.. .+.+.++ ++.+||||+|++||||+++||.|.+|+++||+||
T Consensus 355 -Nc~rDAll~S~in~~ts~~sgfviFsvLg~~a~~~y~~~~~~e~~~~~~gp~lafivy~Eait~~~~s~fWs~iFFlmL 433 (629)
T KOG3659|consen 355 -NCYRDALLTSIINCLTSFLSGFVIFSVLGYMATLIYPCNEEIEELVAVAGPGLAFIVYPEAITNMPYSSFWSVIFFLML 433 (629)
T ss_pred -chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHhhhhcCCceEEEehhhHHhcCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 8888888 7899999999999999999999999999999999
Q ss_pred HHHhhhcCCccc-ceeEEeeccccccccccCCCCCCCCCcccccccceeeeeeee--------cccc-------------
Q psy15483 613 IMLGIDSAVSRK-PVVSGTLKSRVINWKTLGRKEPGSSSYGCFFSAWLRLLTLSG--------VLGS------------- 670 (830)
Q Consensus 613 ~~~g~~s~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~------------- 670 (830)
+.+|+||+++.+ +++|++.|.+...++ ++|+.+++ +++.
T Consensus 434 ~~lgl~s~~g~~e~iit~l~d~~~~~l~-------------------~~~e~~~~~~~l~~~~~~l~~~~~~g~y~~~ll 494 (629)
T KOG3659|consen 434 LTLGLDSMFGGIEAIITPLLDEFYLSLR-------------------KHRELFTLLVCLFSFLLGLPFITAGGGYVFPLL 494 (629)
T ss_pred HHHhhHhhhhhHHHHhccccchhhhHhh-------------------hhHHHHHHHHHHHHHhhhhhhccccceeeehhh
Confidence 999999999999 999999999964332 12222222 2333
Q ss_pred -----------------------------------ccccccceeeecccEEeeccceeeeeeeeeeeeccccccCCccCC
Q psy15483 671 -----------------------------------NHGRGGNLLTCLGGVIVSGTVKSRGVVLFSIIFHEPLQYNDYSYP 715 (830)
Q Consensus 671 -----------------------------------mvt~~G~y~~~igW~~itPli~ll~ili~slv~~~pl~y~~y~YP 715 (830)
|.++.+..||++||+.++|++ ++.++++++..++|+++..|.||
T Consensus 495 ~~y~~~~~vl~~Vlie~i~VswvYG~~rf~~d~~~Mlg~~P~~yw~v~w~~vsp~~-ll~if~~~~~~~~~~~~~~y~yp 573 (629)
T KOG3659|consen 495 IDYAAGLLVLFVVLIEAIAVSWVYGVRRFSADVKQMLGFRPGWYWRVCWPCVSPVF-LLFIFVFSLRNFSPIQVVIYAYP 573 (629)
T ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHhCCCCchhHHHHHhhhhHHH-HHHHHHHHHhccccceEEeecCC
Confidence 445555556678899999999 99999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhhCCC-ccccCceeeeeccCcC
Q psy15483 716 GWAEWIGWSLALSSILMIPIVAIFKLITTPG-TLKEGGIYMFHLFDTY 762 (830)
Q Consensus 716 ~Wa~~iGw~l~l~sil~IPi~ai~~l~~~~g-t~~er~~~~~~p~D~~ 762 (830)
+|+.++||.+..+++++||++++|++++.+| +.+||..+...|++..
T Consensus 574 ~Wa~~l~~~i~~ss~~~ip~~~~y~~~~~~~~~~~~~~~~~~~p~~~~ 621 (629)
T KOG3659|consen 574 DWALVLGWAIRASSKICIPLYAIYKFVSRRGVSGKERLHRWITPEEGH 621 (629)
T ss_pred chHHHHHHHHHhhHHHHHhHHhhheeeecCCCCchhhcccccCCCCCC
Confidence 9999999999999999999999999999986 9999999999999865
|
|
| >KOG3660|consensus | Back alignment and domain information |
|---|
| >PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses | Back alignment and domain information |
|---|
| >COG0733 Na+-dependent transporters of the SNF family [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3660|consensus | Back alignment and domain information |
|---|
| >KOG3659|consensus | Back alignment and domain information |
|---|
| >COG0733 Na+-dependent transporters of the SNF family [General function prediction only] | Back alignment and domain information |
|---|
| >PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 830 | ||||
| 3qs6_A | 519 | Crystal Structure Of Leut Mutant F259v,I359q Bound | 7e-09 | ||
| 3gjd_A | 515 | Crystal Structure Of Leut With Bound Og Length = 51 | 8e-09 | ||
| 3qs5_A | 519 | Crystal Structure Of Leut Mutant I359q Bound To Sod | 8e-09 | ||
| 3qs4_A | 519 | Crystal Structure Of Leut Mutant F259v Bound To Sod | 8e-09 | ||
| 4fxz_A | 513 | Crystal Structure Of Leut-F253a Bound To L-Leucine | 8e-09 | ||
| 2a65_A | 519 | Crystal Structure Of Leutaa, A Bacterial Homolog Of | 9e-09 | ||
| 3tt3_A | 519 | Crystal Structure Of Leut In The Inward-Open Confor | 9e-09 | ||
| 3mpn_A | 507 | F177r1 Mutant Of Leut Length = 507 | 9e-09 | ||
| 3gjc_A | 513 | Crystal Structure Of The E290s Mutant Of Leut With | 9e-09 | ||
| 2qju_A | 511 | Crystal Structure Of An Nss Homolog With Bound Anti | 9e-09 | ||
| 3f3d_A | 517 | Crystal Structure Of Leut Bound To L-Methionine And | 9e-09 | ||
| 3tu0_A | 519 | Crystal Structure Of T355v, S354a, K288a Leut Mutan | 9e-09 | ||
| 3mpq_A | 507 | I204r1 Mutant Of Leut Length = 507 | 9e-09 | ||
| 3f3a_A | 508 | Crystal Structure Of Leut Bound To L-Tryptophan And | 1e-08 | ||
| 3tt1_A | 519 | Crystal Structure Of Leut In The Outward-Open Confo | 3e-08 |
| >pdb|3QS6|A Chain A, Crystal Structure Of Leut Mutant F259v,I359q Bound To Sodium And L- Tryptophan Length = 519 | Back alignment and structure |
|
| >pdb|3GJD|A Chain A, Crystal Structure Of Leut With Bound Og Length = 515 | Back alignment and structure |
| >pdb|3QS5|A Chain A, Crystal Structure Of Leut Mutant I359q Bound To Sodium And L- Tryptophan Length = 519 | Back alignment and structure |
| >pdb|3QS4|A Chain A, Crystal Structure Of Leut Mutant F259v Bound To Sodium And L- Tryptophan Length = 519 | Back alignment and structure |
| >pdb|4FXZ|A Chain A, Crystal Structure Of Leut-F253a Bound To L-Leucine From Lipid Bicelles Length = 513 | Back alignment and structure |
| >pdb|2A65|A Chain A, Crystal Structure Of Leutaa, A Bacterial Homolog Of Na+/cl--dependent Neurotransmitter Transporters Length = 519 | Back alignment and structure |
| >pdb|3TT3|A Chain A, Crystal Structure Of Leut In The Inward-Open Conformation In Complex With Fab Length = 519 | Back alignment and structure |
| >pdb|3MPN|A Chain A, F177r1 Mutant Of Leut Length = 507 | Back alignment and structure |
| >pdb|3GJC|A Chain A, Crystal Structure Of The E290s Mutant Of Leut With Bound Og Length = 513 | Back alignment and structure |
| >pdb|2QJU|A Chain A, Crystal Structure Of An Nss Homolog With Bound Antidepressant Length = 511 | Back alignment and structure |
| >pdb|3TU0|A Chain A, Crystal Structure Of T355v, S354a, K288a Leut Mutant In Complex With Alanine And Sodium Length = 519 | Back alignment and structure |
| >pdb|3MPQ|A Chain A, I204r1 Mutant Of Leut Length = 507 | Back alignment and structure |
| >pdb|3TT1|A Chain A, Crystal Structure Of Leut In The Outward-Open Conformation In Complex With Fab Length = 519 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Length = 519 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 2e-32
Identities = 55/273 (20%), Positives = 95/273 (34%), Gaps = 39/273 (14%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RE W + +L++ G AV L N RFP +NGGGAF++PY + + +PL ++E
Sbjct: 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 64
Query: 124 LGQFNRQGPISVWRIC-------PLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTT 176
+G++ K +G + + V+ YY I W L F
Sbjct: 65 MGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLV 124
Query: 177 SELPWLNCNNTWNTPLCEDTYNRTNGSSFTFYHYDFSRAVLEMQWSEGLHDMGYPKWSLV 236
P T + F + Y + + +G + P
Sbjct: 125 ---------GLVPEPPPNATDPDSILRPFKEFLYSY------IGVPKGDEPILKPSLFAY 169
Query: 237 LCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMP--YVVLTILLIRGLMLP-- 292
+ + L +G+ + +A MP +++ L+IR +L
Sbjct: 170 IVFLITMFINVSILIRGISKGIER----------FAKIAMPTLFILAVFLVIRVFLLETP 219
Query: 293 --GALTGIAYYLQQPAPSSLPGNLVTTAPLRQV 323
A G+ + P L V A + Q+
Sbjct: 220 NGTAADGLNFLW-TPDFEKLKDPGVWIAAVGQI 251
|
| >2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Length = 519 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 830 | |||
| 2a65_A | 519 | Leutaa, Na(+):neurotransmitter symporter (SNF fami | 100.0 | |
| 2a65_A | 519 | Leutaa, Na(+):neurotransmitter symporter (SNF fami | 99.75 |
| >2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-83 Score=732.31 Aligned_cols=442 Identities=18% Similarity=0.289 Sum_probs=376.7
Q ss_pred CCCCCCchhHHHHHHHHhhhcCCceeecceeeeccCceeehHhHHHHHHHHhHHHHHHHHHHhh----ccCCCccccc-c
Q psy15483 63 GRETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELILGQ----FNRQGPISVW-R 137 (830)
Q Consensus 63 ~R~~W~sk~~FiLa~iG~AVGLGNiWRFPyl~~~nGGGAFLIpYli~l~~iGiPll~lElalGQ----~~r~g~i~aw-~ 137 (830)
+|++|+||.+|+|||+|+||||||+|||||+|++||||||++||+++++++|+|++++|+++|| ++|+|++++| +
T Consensus 4 ~R~~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~ 83 (519)
T 2a65_A 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYL 83 (519)
T ss_dssp -CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999 8889999999 8
Q ss_pred cccC--ccccchhhHHHHHhhhhhhHHHHHHHHHHHHHhcCCCCC--CCcCCCCCCCccccccccCCCCCcccchHHHHH
Q psy15483 138 ICPL--FKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELP--WLNCNNTWNTPLCEDTYNRTNGSSFTFYHYDFS 213 (830)
Q Consensus 138 l~P~--~~GvG~~~vl~~~li~~YY~VIiaW~l~Y~~~Sf~~~LP--W~~C~~~wn~~~C~~~~~~~~~~~~s~~~~ff~ 213 (830)
++|+ |+|+|++++++++++++||+|++||+++|+++|+++++| |++|+ +|.+ ..++.++||+
T Consensus 84 l~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~------~~~~--------~~~~~~~~f~ 149 (519)
T 2a65_A 84 LWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNAT------DPDS--------ILRPFKEFLY 149 (519)
T ss_dssp HSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--C------CHHH--------HHHHHHHHHH
T ss_pred hcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC------Cccc--------ccCcHHHHHH
Confidence 9987 999999999999999999999999999999999999999 66432 1211 1245667886
Q ss_pred HhhhhccccCCCCCCcchhHHHHHHHHHHHHhhheeeeccccccccccccccccceeeehhhhh--HHHHhhheeecccC
Q psy15483 214 RAVLEMQWSEGLHDMGYPKWSLVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMP--YVVLTILLIRGLML 291 (830)
Q Consensus 214 ~~vL~~~~s~gi~~~g~i~w~l~l~~ll~~~iv~~gv~kGIk~~~~~~~~~~~~Kv~~~~~lmP--~vlliiL~irsltL 291 (830)
+ +++. ++++++.|+++|++++|++++|++++.++.||+|++.+ |+ .+++|| +++++++++|++||
T Consensus 150 ~-~l~~--~~~~~~~g~~~~~~~~~~~~~w~i~~~ii~~Gv~kgie--------k~--~~~~mp~l~vlliiL~ir~ltL 216 (519)
T 2a65_A 150 S-YIGV--PKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIE--------RF--AKIAMPTLFILAVFLVIRVFLL 216 (519)
T ss_dssp H-HHTC--CSSSSCBCCCCHHHHHHHHHHHHHHHHHHTTCTTTTHH--------HH--HHHHHHHHHHHHHHHHHHHTTC
T ss_pred H-HHCC--CCCcccccCccHHHHHHHHHHHHHHHHHHHHhhhhhhH--------HH--HHHHHHHHHHHHHHHHHHHhcC
Confidence 5 5665 78899999999999999999999999999999977643 33 566676 68999999999999
Q ss_pred cc----hhhhHhhhcccCCCCCCCCcccccccccccceeeeeccccCeeeeeecchhHHHHHHHHHHhccccchhhhhhh
Q psy15483 292 PG----ALTGIAYYLQQPAPSSLPGNLVTTAPLRQVPTFISFDIISGKVVWATATMPYVVLTILLIRGLMLPGALTGIAY 367 (830)
Q Consensus 292 pG----A~~Gl~flf~~Pd~s~L~~~~vW~aA~gQ~ity~Sy~~~~g~~i~~~~~~p~vil~i~~i~gl~l~~a~~~l~~ 367 (830)
|| |.+|++|+|+ ||||++.++++|.+|+
T Consensus 217 pGp~~~A~~Gl~~~~~-Pd~s~L~~~~vw~~A~----------------------------------------------- 248 (519)
T 2a65_A 217 ETPNGTAADGLNFLWT-PDFEKLKDPGVWIAAV----------------------------------------------- 248 (519)
T ss_dssp EETTEEHHHHHHHHHS-CCTTSTTCHHHHHHHH-----------------------------------------------
T ss_pred CCCchhHHHHHHHHhc-CCHHHhCCHHHHHHHH-----------------------------------------------
Confidence 99 9999999998 9999998877777764
Q ss_pred ccccCcccccCccceeeecccccccCCCceeEeecchhhhcccccccccccccccccccchhhhcccchhHHHHHHHHHH
Q psy15483 368 YLQPELSRLKETQVKFISLNYLSVQGNTGVERCSRPDFLLCWGRIWCSRFRVHLADHCTTEELSLSLTPLCWCLVLFPCF 447 (830)
Q Consensus 368 ~~~p~~~~~~~~~~w~~a~~~~~~q~~~gl~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfF~~~ 447 (830)
+|
T Consensus 249 -----------------------gQ------------------------------------------------------- 250 (519)
T 2a65_A 249 -----------------------GQ------------------------------------------------------- 250 (519)
T ss_dssp -----------------------HH-------------------------------------------------------
T ss_pred -----------------------HH-------------------------------------------------------
Confidence 55
Q ss_pred hhccCCCCCCCCCCCccceeeeeeccchhhHHHHhhhhhhhccccCCCCcccceeehhhhhhhhhhhccccccchhhhHh
Q psy15483 448 TWNSFSDSSTDKGPSVFGEFVLYSKMGGLECVITGLMDEFRVYFKGYPHAREIFTCCAIAVSFSVAMINVTPVHEHLTEL 527 (830)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~e~~i~~l~d~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 527 (830)
++||++.++ |.+.++|||+ ++++
T Consensus 251 --------------------~FFSLslG~------------------------------G~~ity~SY~--~~~~----- 273 (519)
T 2a65_A 251 --------------------IFFTLSLGF------------------------------GAIITYASYV--RKDQ----- 273 (519)
T ss_dssp --------------------HHHHHTTTS------------------------------SHHHHHHTTS--CTTS-----
T ss_pred --------------------HHHHhHHHH------------------------------hHHhhhhccc--CCCc-----
Confidence 567777888 9999999999 9898
Q ss_pred hhhcCCCCCCCceeeeEEEeccchhhccccceEEEEecccccccccCC-ccccccCC-CcEEEehhHHHHHhCCCcchHH
Q psy15483 528 QRQDNLSPSSITFRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIP-ISRVATDG-PGLVFQVYPEAVATLPASNVWS 605 (830)
Q Consensus 528 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~if~~~g~~~~~~~~~-~~~~~~~g-~gl~fi~~~~~~~~~p~~~~~~ 605 (830)
|..||+.++++.|+++|++||++||+.+||++ +++| +++++++| |||+|++||+++++||++++|+
T Consensus 274 ----------n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a--~g~~~~~~v~~~G~pgL~Fi~~P~af~~mp~g~~~~ 341 (519)
T 2a65_A 274 ----------DIVLSGLTAATLNEKAEVILGGSISIPAAVAF--FGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLG 341 (519)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH--HCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHHHH
T ss_pred ----------ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcchHHHhcCCCCceeHHHHHHHHHhCCCccchH
Confidence 99999999999999999999999999999987 6777 66777889 9999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCccc-ceeEEeeccccccccccCCCCCCCCCcccccccceeeeeeeeccccccccccceeeeccc
Q psy15483 606 MLFFFMLIMLGIDSAVSRK-PVVSGTLKSRVINWKTLGRKEPGSSSYGCFFSAWLRLLTLSGVLGSNHGRGGNLLTCLGG 684 (830)
Q Consensus 606 ~~ff~~l~~~g~~s~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mvt~~G~y~~~igW 684 (830)
++||+||+++|+||+++++ ++++.+.|+++. +|+..+.
T Consensus 342 ~lFF~~l~~agltS~i~~~E~~vt~l~D~~~~-----------------------~R~~~~~------------------ 380 (519)
T 2a65_A 342 FLWFFLLFFAGLTSSIAIMQPMIAFLEDELKL-----------------------SRKHAVL------------------ 380 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-----------------------CHHHHHH------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHhhCC-----------------------cHHHHHH------------------
Confidence 9999999999999999999 999999999873 1111111
Q ss_pred EEeeccceeeeeeeeeeeeccccccCCccCChhHHHHHHHHHHhhhhHHHHHHHHHHhhCCCccccCceeeeeccCcCCc
Q psy15483 685 VIVSGTVKSRGVVLFSIIFHEPLQYNDYSYPGWAEWIGWSLALSSILMIPIVAIFKLITTPGTLKEGGIYMFHLFDTYSA 764 (830)
Q Consensus 685 ~~itPli~ll~ili~slv~~~pl~y~~y~YP~Wa~~iGw~l~l~sil~IPi~ai~~l~~~~gt~~er~~~~~~p~D~~~~ 764 (830)
.+ + .++++ +.+|.. +++ ++ ++..|++.+
T Consensus 381 -----~v-~--------------------------~~~fl------lgl~~~-------~~~----~g---~~~~D~~~~ 408 (519)
T 2a65_A 381 -----WT-A--------------------------AIVFF------SAHLVM-------FLN----KS---LDEMDFWAG 408 (519)
T ss_dssp -----HH-H--------------------------HHHHH------HHHHHH-------HBT----TH---HHHHHHHTT
T ss_pred -----HH-H--------------------------HHHHH------HHHHHH-------cCC----CC---cchHHHHHh
Confidence 00 0 01111 112221 111 12 899999999
Q ss_pred hhHHHHHHHHhheeEeeecccchhccccch--------heeeeeehhhhhhhhheeeccccCc
Q psy15483 765 GISLLCSALFESVAVSWFYGKSRGSSQQHK--------VQVKSVKYLIELEKHIITISRCRDN 819 (830)
Q Consensus 765 ~~~ll~ial~e~i~VgWiYG~~rf~~~~~~--------~~~~~~~y~~Pl~~~~~~~~~~~~~ 819 (830)
++.+|+++++|+++++|+||.+|+.+|.++ .|+..+||++|+...++++....+.
T Consensus 409 ~~~l~~~~l~~~i~v~wv~g~~~~~~~i~~~~~~~~~~~w~~~~~~v~P~~l~~i~~~~~~~~ 471 (519)
T 2a65_A 409 TIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREY 471 (519)
T ss_dssp THHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhheeeehhHHHHHHHcccCCchHHHHHHeEEehHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998763 4667789999999999998766543
|
| >2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 830 | ||||
| d2a65a1 | 509 | f.54.1.1 (A:5-513) Na(+):neurotransmitter symporte | 5e-44 | |
| d2a65a1 | 509 | f.54.1.1 (A:5-513) Na(+):neurotransmitter symporte | 7e-12 |
| >d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Length = 509 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: SNF-like superfamily: SNF-like family: SNF-like domain: Na(+):neurotransmitter symporter homologue LeuT species: Aquifex aeolicus [TaxId: 63363]
Score = 164 bits (417), Expect = 5e-44
Identities = 53/268 (19%), Positives = 91/268 (33%), Gaps = 29/268 (10%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RE W + +L++ G AV L N RFP +NGGGAF++PY + + +PL ++E
Sbjct: 1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 60
Query: 124 LGQFNRQGPISVWRI-------CPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTT 176
+G++ K +G + + V+ YY I W L F
Sbjct: 61 MGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLV 120
Query: 177 SELPWLNCNNTWNTPLCEDTYNRTNGSSFTFYHYDFSRAVLEMQWSEGLHDMGYPKWS-L 235
+P N T S + + + E + +
Sbjct: 121 GLVPEPPPNATDPD------------SILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVF 168
Query: 236 VLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGAL 295
++ +F +L + KG++ + T + V L I + G
Sbjct: 169 LITMFINVSILIRGISKGIERFAK---------IAMPTLFILAVFLVIRVFLLETPNGTA 219
Query: 296 TGIAYYLQQPAPSSLPGNLVTTAPLRQV 323
+L P L V A + Q+
Sbjct: 220 ADGLNFLWTPDFEKLKDPGVWIAAVGQI 247
|
| >d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Length = 509 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 830 | |||
| d2a65a1 | 509 | Na(+):neurotransmitter symporter homologue LeuT {A | 100.0 | |
| d2a65a1 | 509 | Na(+):neurotransmitter symporter homologue LeuT {A | 99.46 |
| >d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: SNF-like superfamily: SNF-like family: SNF-like domain: Na(+):neurotransmitter symporter homologue LeuT species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=4.5e-72 Score=640.41 Aligned_cols=442 Identities=19% Similarity=0.286 Sum_probs=356.8
Q ss_pred CCCCCchhHHHHHHHHhhhcCCceeecceeeeccCceeehHhHHHHHHHHhHHHHHHHHHHhhccCCCccccc-cc----
Q psy15483 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELILGQFNRQGPISVW-RI---- 138 (830)
Q Consensus 64 R~~W~sk~~FiLa~iG~AVGLGNiWRFPyl~~~nGGGAFLIpYli~l~~iGiPll~lElalGQ~~r~g~i~aw-~l---- 138 (830)
||+|+||+||++||+|+|||+||+|||||+|++||||||++||+++++++|+|++++|+++||++|+|++++| ++
T Consensus 1 R~~W~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~~~ 80 (509)
T d2a65a1 1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLL 80 (509)
T ss_dssp CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999 44
Q ss_pred --ccCccccchhhHHHHHhhhhhhHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCccccccccCCCCCcccchHHHHHHhh
Q psy15483 139 --CPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWLNCNNTWNTPLCEDTYNRTNGSSFTFYHYDFSRAV 216 (830)
Q Consensus 139 --~P~~~GvG~~~vl~~~li~~YY~VIiaW~l~Y~~~Sf~~~LPW~~C~~~wn~~~C~~~~~~~~~~~~s~~~~ff~~~v 216 (830)
+|++||+|++++++++++++||+++++|+++|+++|+++++||+.|++++++ +| .++.++|+++.+
T Consensus 81 ~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s~~~~lp~~~~~~~~~~-~~-----------~~~~~~~~~~~~ 148 (509)
T d2a65a1 81 WRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPD-SI-----------LRPFKEFLYSYI 148 (509)
T ss_dssp SCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHH-HH-----------HHHHHHHHHHHH
T ss_pred ccCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCcccccCcc-cc-----------ccchHHHHHhhh
Confidence 6788999999999999999999999999999999999999999988766543 22 245678887765
Q ss_pred hhccccCCCCCCcc-hhHHHHHHHHHHHHhhheeeeccccccccccccccccceeeehhhhhH--HHHhhheeecccCc-
Q psy15483 217 LEMQWSEGLHDMGY-PKWSLVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPY--VVLTILLIRGLMLP- 292 (830)
Q Consensus 217 L~~~~s~gi~~~g~-i~w~l~l~~ll~~~iv~~gv~kGIk~~~~~~~~~~~~Kv~~~~~lmP~--vlliiL~irsltLp- 292 (830)
...+.++++.+... ....+++++.++|.++++++.||+|+. .++++|. ++.++++++.++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~gi~kGi~~~--------------~kv~~~~l~~~~~~l~i~~~~l~~ 214 (509)
T d2a65a1 149 GVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERF--------------AKIAMPTLFILAVFLVIRVFLLET 214 (509)
T ss_dssp TCCSSSSCBCCCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHH--------------HHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred ccccCCCccccchHHHHHHHHHHHHHHHHHHhhcccchhhhh--------------hHHHHHHHHHHHHHHHHHhhhccc
Confidence 44322223222222 133345568888889999999999998 4557774 45556777777777
Q ss_pred ---chhhhHhhhcccCCCCCCCCcccccccccccceeeeeccccCeeeeeecchhHHHHHHHHHHhccccchhhhhhhcc
Q psy15483 293 ---GALTGIAYYLQQPAPSSLPGNLVTTAPLRQVPTFISFDIISGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYL 369 (830)
Q Consensus 293 ---GA~~Gl~flf~~Pd~s~L~~~~vW~aA~gQ~ity~Sy~~~~g~~i~~~~~~p~vil~i~~i~gl~l~~a~~~l~~~~ 369 (830)
||.+|++|+++ ||+++|.++++|.+|+
T Consensus 215 ~~gga~~gl~~~~~-pd~~~L~~~~vW~~A~------------------------------------------------- 244 (509)
T d2a65a1 215 PNGTAADGLNFLWT-PDFEKLKDPGVWIAAV------------------------------------------------- 244 (509)
T ss_dssp TTEEHHHHHHHHHS-CCTTSTTCHHHHHHHH-------------------------------------------------
T ss_pred CCCcHHHHhhhccC-CCHHHhcChHHHHHHH-------------------------------------------------
Confidence 89999999998 9999998888777764
Q ss_pred ccCcccccCccceeeecccccccCCCceeEeecchhhhcccccccccccccccccccchhhhcccchhHHHHHHHHHHhh
Q psy15483 370 QPELSRLKETQVKFISLNYLSVQGNTGVERCSRPDFLLCWGRIWCSRFRVHLADHCTTEELSLSLTPLCWCLVLFPCFTW 449 (830)
Q Consensus 370 ~p~~~~~~~~~~w~~a~~~~~~q~~~gl~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfF~~~~~ 449 (830)
.|
T Consensus 245 ---------------------~Q--------------------------------------------------------- 246 (509)
T d2a65a1 245 ---------------------GQ--------------------------------------------------------- 246 (509)
T ss_dssp ---------------------HH---------------------------------------------------------
T ss_pred ---------------------HH---------------------------------------------------------
Confidence 44
Q ss_pred ccCCCCCCCCCCCccceeeeeeccchhhHHHHhhhhhhhccccCCCCcccceeehhhhhhhhhhhccccccchhhhHhhh
Q psy15483 450 NSFSDSSTDKGPSVFGEFVLYSKMGGLECVITGLMDEFRVYFKGYPHAREIFTCCAIAVSFSVAMINVTPVHEHLTELQR 529 (830)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~S~~~~~e~~i~~l~d~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 529 (830)
+++|...+. |.+.++|+|+ ++++
T Consensus 247 ------------------~ffSlgiG~------------------------------G~~i~~~Sy~--~~~~------- 269 (509)
T d2a65a1 247 ------------------IFFTLSLGF------------------------------GAIITYASYV--RKDQ------- 269 (509)
T ss_dssp ------------------HHHHHTTTS------------------------------SHHHHHHTTS--CTTS-------
T ss_pred ------------------HhhhhcccC------------------------------Cceeeehhhc--cchh-------
Confidence 557777777 8899999999 8888
Q ss_pred hcCCCCCCCceeeeEEEeccchhhccccceEEEEecccccccccCCccccccCCCcEEEehhHHHHHhCCCcchHHHHHH
Q psy15483 530 QDNLSPSSITFRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATLPASNVWSMLFF 609 (830)
Q Consensus 530 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~if~~~g~~~~~~~~~~~~~~~~g~gl~fi~~~~~~~~~p~~~~~~~~ff 609 (830)
|..||+.++...|+.+|++++.+++...+++......+.+.+..+|+||+|+++||++++||++++|+++||
T Consensus 270 --------n~~rda~~v~~~~~~~si~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~L~Fv~~P~~fs~~~~~~~~~~lFF 341 (509)
T d2a65a1 270 --------DIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWF 341 (509)
T ss_dssp --------CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHHHHHHHH
T ss_pred --------hhcccceEEEecccceeeccccchhhhhheeeeccccccccccccCCCchhhhhHHHhhcCCcchhHHHHHH
Confidence 899999999999999999999887777777766666555666688999999999999999999999999999
Q ss_pred HHHHHHhhhcCCccc-ceeEEeeccccccccccCCCCCCCCCcccccccceeeeeeeeccccccccccceeeecccEEee
Q psy15483 610 FMLIMLGIDSAVSRK-PVVSGTLKSRVINWKTLGRKEPGSSSYGCFFSAWLRLLTLSGVLGSNHGRGGNLLTCLGGVIVS 688 (830)
Q Consensus 610 ~~l~~~g~~s~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mvt~~G~y~~~igW~~it 688 (830)
+|++++|++|+++.+ ++++.+.|.++. .| ++.+...
T Consensus 342 ~~l~~~gl~s~i~~~e~~v~~l~d~~~~--------------------~r-~~~~~~~---------------------- 378 (509)
T d2a65a1 342 FLLFFAGLTSSIAIMQPMIAFLEDELKL--------------------SR-KHAVLWT---------------------- 378 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCC--------------------CH-HHHHHHH----------------------
T ss_pred HHHHHHHHHHHhccccchhHHHHHhcCC--------------------ch-hhhhhhe----------------------
Confidence 999999999999999 999999998762 11 1111100
Q ss_pred ccceeeeeeeeeeeeccccccCCccCChhHHHHHHHHHHhhhhHHHHHHHHHHhhCCCccccCceeeeeccCcCCchhHH
Q psy15483 689 GTVKSRGVVLFSIIFHEPLQYNDYSYPGWAEWIGWSLALSSILMIPIVAIFKLITTPGTLKEGGIYMFHLFDTYSAGISL 768 (830)
Q Consensus 689 Pli~ll~ili~slv~~~pl~y~~y~YP~Wa~~iGw~l~l~sil~IPi~ai~~l~~~~gt~~er~~~~~~p~D~~~~~~~l 768 (830)
+ .+.+++ ..+|.. ++. .++..|++.++..+
T Consensus 379 --~----------------------------~~~~~~-----~~~~~~------------~~~---~~~~~D~~~~~~~l 408 (509)
T d2a65a1 379 --A----------------------------AIVFFS-----AHLVMF------------LNK---SLDEMDFWAGTIGV 408 (509)
T ss_dssp --H----------------------------HHHHHH-----HHHHHH------------BTT---HHHHHHHHTTTHHH
T ss_pred --e----------------------------EEEEhh-----hhHHHH------------hcc---hHHHHHHHHHHHHH
Confidence 0 000000 111111 111 25677899999999
Q ss_pred HHHHHHhheeEeeecccchhccccch--------heeeeeehhhhhhhhheeecccc
Q psy15483 769 LCSALFESVAVSWFYGKSRGSSQQHK--------VQVKSVKYLIELEKHIITISRCR 817 (830)
Q Consensus 769 l~ial~e~i~VgWiYG~~rf~~~~~~--------~~~~~~~y~~Pl~~~~~~~~~~~ 817 (830)
++++++|+++++|+||.||+.+|+++ .|+..+||++|+...++++..+.
T Consensus 409 ~~~~l~e~i~v~w~yg~~r~~~di~~~~~~~~~~~~~~~~~~i~Pi~l~~ili~~~~ 465 (509)
T d2a65a1 409 VFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAR 465 (509)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHheeeeEecHHHHHHHHHhCCCCCHHHHHHHheeeeeHhhhhheeehhHh
Confidence 99999999999999999999998864 56667899999999988876543
|
| >d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|