Psyllid ID: psy15505
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2400 | 2.2.26 [Sep-21-2011] | |||||||
| Q9HCM2 | 1894 | Plexin-A4 OS=Homo sapiens | yes | N/A | 0.259 | 0.328 | 0.609 | 0.0 | |
| Q6BEA0 | 1903 | Plexin-A4 OS=Danio rerio | yes | N/A | 0.259 | 0.327 | 0.599 | 0.0 | |
| Q80UG2 | 1893 | Plexin-A4 OS=Mus musculus | yes | N/A | 0.259 | 0.328 | 0.606 | 0.0 | |
| B0S5N4 | 1892 | Plexin A3 OS=Danio rerio | no | N/A | 0.261 | 0.331 | 0.580 | 0.0 | |
| O75051 | 1894 | Plexin-A2 OS=Homo sapiens | no | N/A | 0.275 | 0.348 | 0.555 | 0.0 | |
| P70206 | 1894 | Plexin-A1 OS=Mus musculus | no | N/A | 0.241 | 0.305 | 0.612 | 0.0 | |
| P70207 | 1894 | Plexin-A2 OS=Mus musculus | no | N/A | 0.275 | 0.348 | 0.555 | 0.0 | |
| Q9UIW2 | 1896 | Plexin-A1 OS=Homo sapiens | no | N/A | 0.241 | 0.305 | 0.609 | 0.0 | |
| D3ZPX4 | 1872 | Plexin-A3 OS=Rattus norve | no | N/A | 0.280 | 0.360 | 0.530 | 0.0 | |
| P70208 | 1872 | Plexin-A3 OS=Mus musculus | no | N/A | 0.280 | 0.360 | 0.530 | 0.0 |
| >sp|Q9HCM2|PLXA4_HUMAN Plexin-A4 OS=Homo sapiens GN=PLXNA4 PE=1 SV=4 | Back alignment and function desciption |
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Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/673 (60%), Positives = 489/673 (72%), Gaps = 51/673 (7%)
Query: 1585 AIVGKLSYSPPA---ALNSPLTKTAMYGGIAIITILFLIFI-AFLIAYRRKSTENTRVLK 1640
A VG + YSP A +SPL+ A+ IA+ L +IFI A LIAY+RKS E+ LK
Sbjct: 1214 ARVGGMEYSPGMVYIAPDSPLSLPAIVS-IAVAGGLLIIFIVAVLIAYKRKSRESDLTLK 1272
Query: 1641 NMQEQMDILELRVAAECKEAFAELQTEITDLTGDLTSGGIPFLDYRTYAMMILFPNSEHH 1700
+Q QMD LE RVA ECKEAFAELQT+I +LT DL GIPFLDYRTY M +LFP E H
Sbjct: 1273 RLQMQMDNLESRVALECKEAFAELQTDIHELTSDLDGAGIPFLDYRTYTMRVLFPGIEDH 1332
Query: 1701 AVLQ-FERPELLHK--EKGLRLFGQLIQNKTFLLLFIRTLESNRYFSMRDRVNVASLIMV 1757
VL+ E P + EKGL+LF QLI NK FLL FIRTLES R FSMRDR NVASLIM
Sbjct: 1333 PVLRDLEVPGYRQERVEKGLKLFAQLINNKVFLLSFIRTLESQRSFSMRDRGNVASLIMT 1392
Query: 1758 TLQ-------NILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLSSWFTFLLYKFLRE 1810
LQ ++LK LLA+LI+K +E K+HPKLLLRRTESVAEKML++WFTFLLYKFL+E
Sbjct: 1393 VLQSKLEYATDVLKQLLADLIDKNLESKNHPKLLLRRTESVAEKMLTNWFTFLLYKFLKE 1452
Query: 1811 CAGEPLYLLFRAMKQQVDKGPVDAITAEARYSLSEEKLIRHAIDFKPMTV---------- 1860
CAGEPL+ LF A+KQQ++KGP+DAIT EARYSLSE+KLIR ID+K + +
Sbjct: 1453 CAGEPLFSLFCAIKQQMEKGPIDAITGEARYSLSEDKLIRQQIDYKTLVLSCVSPDNANS 1512
Query: 1861 --------------YVKEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTT 1906
VKEK LD I++ P S RP+ D+D+EWR G+ R+IL D D TT
Sbjct: 1513 PEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITT 1572
Query: 1907 KVEGEWKKVNTLNHYRVPDGGCLNLVSKQY-------NLSILSEKTDKYETL-----NLS 1954
K+E +WK++NTL HY+VPDG + LVSKQ N ++ KYE + +
Sbjct: 1573 KIENDWKRLNTLAHYQVPDGSVVALVSKQVTAYNAVNNSTVSRTSASKYENMIRYTGSPD 1632
Query: 1955 KMGRNTSPLNRDHDGMAKEWHLVKHHDSDNQKEGERSNKMVSEIYLTRLLATKGTLQKFV 2014
+ T + D + K WHLVK+H+ +QKEG+R +KMVSEIYLTRLLATKGTLQKFV
Sbjct: 1633 SLRSRTPMITPDLESGVKMWHLVKNHEHGDQKEGDRGSKMVSEIYLTRLLATKGTLQKFV 1692
Query: 2015 DDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRFWVNLI 2074
DDLFETIFSTAHRGSALPLAIKYMFDFLD+QA HGI DP V HTWKSN LPLRFWVN+I
Sbjct: 1693 DDLFETIFSTAHRGSALPLAIKYMFDFLDEQADKHGIHDPHVRHTWKSNCLPLRFWVNMI 1752
Query: 2075 KNPNFVFDIHKSNIVDSCLSVVAQTFMDSCSTSDHRLGKDSPSSKLLYAKDIPAYKEWVE 2134
KNP FVFDIHK++I D+CLSVVAQTFMDSCSTS+HRLGKDSPS+KLLYAKDIP+YK WVE
Sbjct: 1753 KNPQFVFDIHKNSITDACLSVVAQTFMDSCSTSEHRLGKDSPSNKLLYAKDIPSYKNWVE 1812
Query: 2135 RYYSDIKSMQAISDQDMNAMLAEESRLHNSEFSTNCALYELYTYASKYNEQLTVTLEEDE 2194
RYYSDI M AISDQDMNA LAE+SR+H +EF+T AL E+++Y KY+E++ L+ D+
Sbjct: 1813 RYYSDIGKMPAISDQDMNAYLAEQSRMHMNEFNTMSALSEIFSYVGKYSEEILGPLDHDD 1872
Query: 2195 FSQKQRLAYKLEQ 2207
KQ+LAYKLEQ
Sbjct: 1873 QCGKQKLAYKLEQ 1885
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Coreceptor for SEMA3A. Necessary for signaling by class 3 semaphorins and subsequent remodeling of the cytoskeleton. Plays a role in axon guidance in the developing nervous system. Class 3 semaphorins bind to a complex composed of a neuropilin and a plexin. The plexin modulates the affinity of the complex for specific semaphorins, and its cytoplasmic domain is required for the activation of down-stream signaling events in the cytoplasm. Homo sapiens (taxid: 9606) |
| >sp|Q6BEA0|PLXA4_DANRE Plexin-A4 OS=Danio rerio GN=plxna4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q80UG2|PLXA4_MOUSE Plexin-A4 OS=Mus musculus GN=Plxna4 PE=1 SV=3 | Back alignment and function description |
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| >sp|B0S5N4|PLXA3_DANRE Plexin A3 OS=Danio rerio GN=plxna3 PE=2 SV=2 | Back alignment and function description |
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| >sp|O75051|PLXA2_HUMAN Plexin-A2 OS=Homo sapiens GN=PLXNA2 PE=1 SV=4 | Back alignment and function description |
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| >sp|P70206|PLXA1_MOUSE Plexin-A1 OS=Mus musculus GN=Plxna1 PE=1 SV=1 | Back alignment and function description |
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| >sp|P70207|PLXA2_MOUSE Plexin-A2 OS=Mus musculus GN=Plxna2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9UIW2|PLXA1_HUMAN Plexin-A1 OS=Homo sapiens GN=PLXNA1 PE=1 SV=3 | Back alignment and function description |
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| >sp|D3ZPX4|PLXA3_RAT Plexin-A3 OS=Rattus norvegicus GN=Plxna3 PE=3 SV=1 | Back alignment and function description |
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| >sp|P70208|PLXA3_MOUSE Plexin-A3 OS=Mus musculus GN=Plxna3 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2400 | ||||||
| 383861894 | 1927 | PREDICTED: plexin-A4-like [Megachile rot | 0.358 | 0.446 | 0.653 | 0.0 | |
| 340709439 | 1927 | PREDICTED: plexin-A4-like [Bombus terres | 0.357 | 0.444 | 0.661 | 0.0 | |
| 350407175 | 1927 | PREDICTED: plexin-A4-like [Bombus impati | 0.357 | 0.444 | 0.661 | 0.0 | |
| 110750043 | 1932 | PREDICTED: plexin-A4 [Apis mellifera] | 0.357 | 0.443 | 0.661 | 0.0 | |
| 380023687 | 1926 | PREDICTED: LOW QUALITY PROTEIN: plexin-A | 0.357 | 0.444 | 0.660 | 0.0 | |
| 345488846 | 1494 | PREDICTED: plexin-A4-like [Nasonia vitri | 0.315 | 0.507 | 0.719 | 0.0 | |
| 307207212 | 1442 | Plexin-A4 [Harpegnathos saltator] | 0.358 | 0.597 | 0.647 | 0.0 | |
| 307172549 | 1025 | Plexin-A4 [Camponotus floridanus] | 0.358 | 0.839 | 0.644 | 0.0 | |
| 322797388 | 1477 | hypothetical protein SINV_15044 [Solenop | 0.358 | 0.582 | 0.643 | 0.0 | |
| 91092226 | 1915 | PREDICTED: similar to plexin A CG11081-P | 0.355 | 0.445 | 0.663 | 0.0 |
| >gi|383861894|ref|XP_003706419.1| PREDICTED: plexin-A4-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 1216 bits (3147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 652/998 (65%), Positives = 723/998 (72%), Gaps = 137/998 (13%)
Query: 1320 LDPRVVTI------------LHISGSHMNAAVSLLKHFMMDPPMSAVTSVSREMAPWRKP 1367
+DPR++ I + I+G++MNA S +K F+ + P S +++ E
Sbjct: 953 VDPRILNISPKYGPMSGGTTVRITGNYMNAG-STIKAFIDELPCSIISAEMHEALCMTSA 1011
Query: 1368 LRQKTAGMAKLQYEASVDCWHRIPEQGMQY---PRMRSRHGWHTYQ--------CGGKNP 1416
+ G+ K+ ++ + +RI + +Y PR++S Q GG
Sbjct: 1012 SNRTRNGVLKMVFDGA----YRIYDGYFEYVDDPRIKSVESGVAGQMKIAKGIPAGGIKI 1067
Query: 1417 PV------YIKDPPHFHVVYQDKKFCQLCEVNEVTYSYDLYRTTITGALDKMMKYRASSH 1470
V YI+ P +V Y +K F CEV+ + + T + + A
Sbjct: 1068 SVTGKNLGYIQSP-QMYVYYDEKMFVSQCEVHS---QESMICKSPTIEVPEHEVLDAEKP 1123
Query: 1471 LAGSYGFEMDNVT-------------------------KEIKYYKSDYLTINGQHLDRAS 1505
L YGF MDNVT +EIKYYKSDYLTINGQHLDRA
Sbjct: 1124 LMLEYGFRMDNVTAVQNLSRHGFQHFLLYPNPIYEMFDEEIKYYKSDYLTINGQHLDRAC 1183
Query: 1506 QESDVIVKIGTGFCNVTSVSRLQLTCRPPAEQPPNKND-DDESTAELPDVTVIVGNNLKF 1564
QESDV V+IG FCNVTS+SR QLTCRPP QPP + + ELP+V VIVG L +
Sbjct: 1184 QESDVTVQIGNAFCNVTSLSRQQLTCRPPLTQPPAIDAYGSPNKQELPEVIVIVGGTLHY 1243
Query: 1565 YIGKLSYSPPAALNSPLTKTAIVGKLSYSPPAALNSPLTKTAMYGGIAIITILFLIFIAF 1624
IGKLSY+ PA LN PL+K A+ G IA I IL +FIAF
Sbjct: 1244 KIGKLSYAL---------------------PAGLNGPLSKPALIGVIAAIVILVFVFIAF 1282
Query: 1625 LIAYRRKSTENTRVLKNMQEQMDILELRVAAECKEAFAELQTEITDLTGDLTSGGIPFLD 1684
LIAYRRKSTE+ RVLKNMQEQMDILELRVAAECKEAFAELQTE+TDLTGDLTSGGIPFLD
Sbjct: 1283 LIAYRRKSTESNRVLKNMQEQMDILELRVAAECKEAFAELQTEMTDLTGDLTSGGIPFLD 1342
Query: 1685 YRTYAMMILFPNSEHHAVLQFERPELLHKEKGLRLFGQLIQNKTFLLLFIRTLESNRYFS 1744
YRTYAMMILFP+ ++ VLQ++RPEL KEKGLRLFGQLI NKTFLLLF+RTLESNRYFS
Sbjct: 1343 YRTYAMMILFPSDDNSPVLQWDRPELARKEKGLRLFGQLIMNKTFLLLFVRTLESNRYFS 1402
Query: 1745 MRDRVNVASLIMVTLQ-------NILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLS 1797
MRDRVNVASLIMVTLQ +ILKTLLAELIEKC EGKSHPKL LRRTESVAEKMLS
Sbjct: 1403 MRDRVNVASLIMVTLQSKMEYCTDILKTLLAELIEKCTEGKSHPKLFLRRTESVAEKMLS 1462
Query: 1798 SWFTFLLYKFLRECAGEPLYLLFRAMKQQVDKGPVDAITAEARYSLSEEKLIRHAIDFKP 1857
+WFTFLLYKF+RECAGEPLY+LFRA+KQQVDKGPVDAIT+EARYSLSEEKLIR +IDFKP
Sbjct: 1463 AWFTFLLYKFMRECAGEPLYVLFRAVKQQVDKGPVDAITSEARYSLSEEKLIRQSIDFKP 1522
Query: 1858 MTVY--------------------------------VKEKSLDTIYRATPYSLRPRKDDL 1885
MTVY VKEK+LDTIYRATPYS RPRKDDL
Sbjct: 1523 MTVYVSISQQTVFVGGMDPNTENVPVKVLDCDTISQVKEKALDTIYRATPYSQRPRKDDL 1582
Query: 1886 DVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHYRVPDGGCLNLVSKQ---YNLSILS 1942
D+EWRTG +GRLILYD DSTTK EGEWKK NTLNHYRVPDG LNLVSKQ YNLSILS
Sbjct: 1583 DLEWRTGASGRLILYDEDSTTKTEGEWKKRNTLNHYRVPDGASLNLVSKQSSIYNLSILS 1642
Query: 1943 EKTD---KYETLNLSK-------MGRNTSPLNRDHDGMAKEWHLVKHHDSDNQKEGERSN 1992
EKTD KYETLNLSK + R TSPLN++HDG K WHLVKHHDSD +KEG+R N
Sbjct: 1643 EKTDKSHKYETLNLSKFSSASPPLSRATSPLNQNHDGGLKCWHLVKHHDSDVRKEGDRGN 1702
Query: 1993 KMVSEIYLTRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGIT 2052
KMVSEIYLTRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDF+DDQAL HGI+
Sbjct: 1703 KMVSEIYLTRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFMDDQALQHGIS 1762
Query: 2053 DPEVVHTWKSNSLPLRFWVNLIKNPNFVFDIHKSNIVDSCLSVVAQTFMDSCSTSDHRLG 2112
DPEVVHTWKSNSLPLRFWVNLIKNPNF+FDIHKSNIVDSCLSVVAQTFMDSCSTSDHRLG
Sbjct: 1763 DPEVVHTWKSNSLPLRFWVNLIKNPNFIFDIHKSNIVDSCLSVVAQTFMDSCSTSDHRLG 1822
Query: 2113 KDSPSSKLLYAKDIPAYKEWVERYYSDIKSMQAISDQDMNAMLAEESRLHNSEFSTNCAL 2172
KDSPSSKLLYAKDIP YKEWVERYYSDIK M AISDQDMNAMLAEESRLH +EF+TNCAL
Sbjct: 1823 KDSPSSKLLYAKDIPVYKEWVERYYSDIKVMPAISDQDMNAMLAEESRLHTTEFNTNCAL 1882
Query: 2173 YELYTYASKYNEQLTVTLEEDEFSQKQRLAYKLEQKSN 2210
YELYTYA KYNEQL VTLEEDEFSQKQRLAYKLEQ N
Sbjct: 1883 YELYTYAGKYNEQLIVTLEEDEFSQKQRLAYKLEQVHN 1920
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Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340709439|ref|XP_003393317.1| PREDICTED: plexin-A4-like [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|350407175|ref|XP_003488009.1| PREDICTED: plexin-A4-like [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|110750043|ref|XP_394261.3| PREDICTED: plexin-A4 [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|380023687|ref|XP_003695646.1| PREDICTED: LOW QUALITY PROTEIN: plexin-A4-like [Apis florea] | Back alignment and taxonomy information |
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| >gi|345488846|ref|XP_001601211.2| PREDICTED: plexin-A4-like [Nasonia vitripennis] | Back alignment and taxonomy information |
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| >gi|307207212|gb|EFN85002.1| Plexin-A4 [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|307172549|gb|EFN63947.1| Plexin-A4 [Camponotus floridanus] | Back alignment and taxonomy information |
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| >gi|322797388|gb|EFZ19500.1| hypothetical protein SINV_15044 [Solenopsis invicta] | Back alignment and taxonomy information |
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| >gi|91092226|ref|XP_970548.1| PREDICTED: similar to plexin A CG11081-PA [Tribolium castaneum] gi|270015104|gb|EFA11552.1| plexin A [Tribolium castaneum] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2400 | ||||||
| FB|FBgn0025741 | 1945 | plexA "plexin A" [Drosophila m | 0.145 | 0.179 | 0.798 | 0.0 | |
| UNIPROTKB|O75051 | 1894 | PLXNA2 "Plexin-A2" [Homo sapie | 0.145 | 0.184 | 0.636 | 1.5e-286 | |
| RGD|1305325 | 1894 | Plxna2 "plexin A2" [Rattus nor | 0.145 | 0.184 | 0.633 | 1.2e-285 | |
| MGI|MGI:107684 | 1894 | Plxna2 "plexin A2" [Mus muscul | 0.145 | 0.184 | 0.633 | 4.1e-285 | |
| ZFIN|ZDB-GENE-061007-1 | 1885 | plxna1 "plexin A1" [Danio reri | 0.163 | 0.208 | 0.579 | 7.8e-284 | |
| UNIPROTKB|F1NYZ6 | 1906 | PLXNA2 "Uncharacterized protei | 0.144 | 0.181 | 0.642 | 6.8e-282 | |
| UNIPROTKB|F1PHZ1 | 1977 | PLXNA2 "Uncharacterized protei | 0.141 | 0.171 | 0.637 | 2.9e-281 | |
| MGI|MGI:107685 | 1894 | Plxna1 "plexin A1" [Mus muscul | 0.163 | 0.207 | 0.575 | 3.1e-281 | |
| UNIPROTKB|F8VSZ4 | 1873 | PLXNA1 "Plexin-A1" [Homo sapie | 0.163 | 0.209 | 0.573 | 8.4e-281 | |
| UNIPROTKB|Q9UIW2 | 1896 | PLXNA1 "Plexin-A1" [Homo sapie | 0.163 | 0.207 | 0.573 | 1.2e-280 |
| FB|FBgn0025741 plexA "plexin A" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1466 (521.1 bits), Expect = 0., Sum P(6) = 0.
Identities = 290/363 (79%), Positives = 309/363 (85%)
Query: 1862 VKEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHY 1921
VKEK L+TIYR P S RP KDDLD+EWRTG TGR+ILYD D T+K E EWKK+NTL HY
Sbjct: 1578 VKEKCLETIYRNIPSSPRPPKDDLDLEWRTGATGRVILYDEDVTSKTESEWKKLNTLQHY 1637
Query: 1922 RVPDGGCLNLVSKQ---YNLSILS---EKTDKYETLNLSK-------MGRNTSPLNRD-H 1967
VPDG L+LV KQ YN SILS EK+ KYETLN+SK R SPLN D H
Sbjct: 1638 NVPDGAGLSLVPKQSSIYNFSILSDKNEKSHKYETLNISKYTSSSPTFSRAGSPLNNDMH 1697
Query: 1968 DGMAKEWHLVKHHDSDNQKEGERSNKMVSEIYLTRLLATKGTLQKFVDDLFETIFSTAHR 2027
+ + WHLVKHHDSD QKEGER NK+VSEIYLTRLLATKGTLQKFVDDLFETIFSTAHR
Sbjct: 1698 ENGLRYWHLVKHHDSDMQKEGERVNKLVSEIYLTRLLATKGTLQKFVDDLFETIFSTAHR 1757
Query: 2028 GSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRFWVNLIKNPNFVFDIHKSN 2087
GSALPLAIKYMFDFLDDQA HGITDPEVVHTWKSNSLPLRFWVNLIKNPNFVFDIHKSN
Sbjct: 1758 GSALPLAIKYMFDFLDDQAQLHGITDPEVVHTWKSNSLPLRFWVNLIKNPNFVFDIHKSN 1817
Query: 2088 IVDSCLSVVAQTFMDSCSTSDHRLGKDSPSSKLLYAKDIPAYKEWVERYYSDIKSMQAIS 2147
IVDSCLSVVAQTFMDSCSTSDHRLGKDSPSSKLLYAKDIP Y++WV+RYY DI+ M IS
Sbjct: 1818 IVDSCLSVVAQTFMDSCSTSDHRLGKDSPSSKLLYAKDIPEYRKWVDRYYRDIRDMSPIS 1877
Query: 2148 DQDMNAMLAEESRLHNSEFSTNCALYELYTYASKYNEQLTVTLEEDEFSQKQRLAYKLEQ 2207
DQDMNAMLAEESRLH +EF+TNCAL+ELYTYA KYNEQLTVTLEEDEFSQKQRLA+KLEQ
Sbjct: 1878 DQDMNAMLAEESRLHTTEFNTNCALHELYTYAVKYNEQLTVTLEEDEFSQKQRLAFKLEQ 1937
Query: 2208 KSN 2210
N
Sbjct: 1938 VHN 1940
|
|
| UNIPROTKB|O75051 PLXNA2 "Plexin-A2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| RGD|1305325 Plxna2 "plexin A2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:107684 Plxna2 "plexin A2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-061007-1 plxna1 "plexin A1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NYZ6 PLXNA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PHZ1 PLXNA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| MGI|MGI:107685 Plxna1 "plexin A1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F8VSZ4 PLXNA1 "Plexin-A1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9UIW2 PLXNA1 "Plexin-A1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2400 | |||
| pfam08337 | 538 | pfam08337, Plexin_cytopl, Plexin cytoplasmic RasGA | 0.0 | |
| cd12790 | 385 | cd12790, RasGAP_plexin_A, Ras-GTPase Activating Do | 1e-153 | |
| cd12205 | 382 | cd12205, RasGAP_plexin, Ras-GTPase Activating Doma | 1e-116 | |
| cd11236 | 401 | cd11236, Sema_plexin_like, The Sema domain, a prot | 1e-116 | |
| cd12787 | 391 | cd12787, RasGAP_plexin_B, Ras-GTPase Activating Do | 2e-92 | |
| cd12790 | 385 | cd12790, RasGAP_plexin_A, Ras-GTPase Activating Do | 6e-92 | |
| cd12793 | 394 | cd12793, RasGAP_plexin_B1, Ras-GTPase Activating D | 1e-88 | |
| cd12791 | 397 | cd12791, RasGAP_plexin_B3, Ras-GTPase Activating D | 5e-87 | |
| cd12788 | 419 | cd12788, RasGAP_plexin_D1, Ras-GTPase Activating D | 4e-86 | |
| cd12792 | 400 | cd12792, RasGAP_plexin_B2, Ras-GTPase Activating D | 1e-85 | |
| cd12789 | 393 | cd12789, RasGAP_plexin_C1, Ras-GTPase Activating D | 2e-72 | |
| cd12205 | 382 | cd12205, RasGAP_plexin, Ras-GTPase Activating Doma | 8e-69 | |
| cd11244 | 470 | cd11244, Sema_plexin_A, The Sema domain, a protein | 3e-63 | |
| cd11273 | 469 | cd11273, Sema_plexin_A3, The Sema domain, a protei | 3e-58 | |
| cd11272 | 515 | cd11272, Sema_plexin_A2, The Sema domain, a protei | 3e-56 | |
| cd11271 | 474 | cd11271, Sema_plexin_A1, The Sema domain, a protei | 1e-54 | |
| cd11276 | 449 | cd11276, Sema_plexin_B2, The Sema domain, a protei | 6e-49 | |
| cd11274 | 473 | cd11274, Sema_plexin_A4, The Sema domain, a protei | 2e-48 | |
| cd11245 | 440 | cd11245, Sema_plexin_B, The Sema domain, a protein | 3e-46 | |
| cd12791 | 397 | cd12791, RasGAP_plexin_B3, Ras-GTPase Activating D | 4e-46 | |
| cd12787 | 391 | cd12787, RasGAP_plexin_B, Ras-GTPase Activating Do | 2e-45 | |
| cd12793 | 394 | cd12793, RasGAP_plexin_B1, Ras-GTPase Activating D | 3e-43 | |
| smart00630 | 390 | smart00630, Sema, semaphorin domain | 2e-39 | |
| cd11275 | 461 | cd11275, Sema_plexin_B1, The Sema domain, a protei | 4e-39 | |
| cd12792 | 400 | cd12792, RasGAP_plexin_B2, Ras-GTPase Activating D | 1e-38 | |
| cd12789 | 393 | cd12789, RasGAP_plexin_C1, Ras-GTPase Activating D | 1e-36 | |
| cd12788 | 419 | cd12788, RasGAP_plexin_D1, Ras-GTPase Activating D | 2e-33 | |
| cd11277 | 434 | cd11277, Sema_plexin_B3, The Sema domain, a protei | 3e-33 | |
| cd11248 | 467 | cd11248, Sema_MET_like, The Sema domain, a protein | 2e-29 | |
| cd01180 | 94 | cd01180, IPT_plexin_repeat1, First repeat of the I | 5e-26 | |
| cd11278 | 492 | cd11278, Sema_MET, The Sema domain, a protein inte | 2e-25 | |
| cd11279 | 493 | cd11279, Sema_RON, The Sema domain, a protein inte | 2e-25 | |
| cd01179 | 85 | cd01179, IPT_plexin_repeat2, Second repeat of the | 9e-19 | |
| cd01179 | 85 | cd01179, IPT_plexin_repeat2, Second repeat of the | 2e-18 | |
| cd00603 | 90 | cd00603, IPT_PCSR, IPT domain of Plexins and Cell | 7e-16 | |
| cd11247 | 483 | cd11247, Sema_plexin_D1, The Sema domain, a protei | 1e-15 | |
| pfam01403 | 435 | pfam01403, Sema, Sema domain | 3e-13 | |
| cd00102 | 89 | cd00102, IPT, Immunoglobulin-like fold, Plexins, T | 5e-11 | |
| cd09295 | 392 | cd09295, Sema, The Sema domain, a protein interact | 7e-11 | |
| cd00603 | 90 | cd00603, IPT_PCSR, IPT domain of Plexins and Cell | 8e-11 | |
| smart00429 | 90 | smart00429, IPT, ig-like, plexins, transcription f | 2e-10 | |
| cd01181 | 99 | cd01181, IPT_plexin_repeat3, Third repeat of the I | 2e-09 | |
| cd00102 | 89 | cd00102, IPT, Immunoglobulin-like fold, Plexins, T | 3e-09 | |
| cd00603 | 90 | cd00603, IPT_PCSR, IPT domain of Plexins and Cell | 8e-09 | |
| pfam01437 | 48 | pfam01437, PSI, Plexin repeat | 2e-08 | |
| pfam01833 | 84 | pfam01833, TIG, IPT/TIG domain | 1e-07 | |
| cd04519 | 256 | cd04519, RasGAP, Ras GTPase Activating Domain | 2e-07 | |
| smart00423 | 47 | smart00423, PSI, domain found in Plexins, Semaphor | 7e-07 | |
| cd01179 | 85 | cd01179, IPT_plexin_repeat2, Second repeat of the | 1e-06 | |
| cd00102 | 89 | cd00102, IPT, Immunoglobulin-like fold, Plexins, T | 2e-06 | |
| smart00423 | 47 | smart00423, PSI, domain found in Plexins, Semaphor | 2e-06 | |
| smart00429 | 90 | smart00429, IPT, ig-like, plexins, transcription f | 7e-06 | |
| cd11272 | 515 | cd11272, Sema_plexin_A2, The Sema domain, a protei | 1e-05 | |
| pfam01437 | 48 | pfam01437, PSI, Plexin repeat | 1e-05 | |
| pfam01833 | 84 | pfam01833, TIG, IPT/TIG domain | 1e-04 | |
| pfam01833 | 84 | pfam01833, TIG, IPT/TIG domain | 0.001 | |
| pfam01833 | 84 | pfam01833, TIG, IPT/TIG domain | 0.001 | |
| cd11235 | 437 | cd11235, Sema_semaphorin, The Sema domain, a prote | 0.001 | |
| cd11254 | 470 | cd11254, Sema_3F, The Sema domain, a protein inter | 0.002 | |
| cd11251 | 470 | cd11251, Sema_3C, The Sema domain, a protein inter | 0.004 |
| >gnl|CDD|149409 pfam08337, Plexin_cytopl, Plexin cytoplasmic RasGAP domain | Back alignment and domain information |
|---|
Score = 787 bits (2035), Expect = 0.0
Identities = 308/548 (56%), Positives = 383/548 (69%), Gaps = 49/548 (8%)
Query: 1678 GGIPFLDYRTYAMMILF--PNSEHHAVLQ--FERPELLHKEKGLRLFGQLIQNKTFLLLF 1733
GIPFLDY+ YA + F P E H +L+ E+GL F QL+ NK+FLL F
Sbjct: 1 SGIPFLDYKHYAERVFFPDPGHETHPLLRDLVPESRRPTVEQGLTQFSQLLNNKSFLLTF 60
Query: 1734 IRTLESNRYFSMRDRVNVASLIMVTLQN-------ILKTLLAELIEKCMEGKSHPKLLLR 1786
I TLES R FS+RDR NVASL+ V L ILKTLL +LIEK +E K +PKL+LR
Sbjct: 61 IHTLESQRSFSVRDRCNVASLLTVALHGKLEYCTDILKTLLRDLIEKSVEAK-NPKLMLR 119
Query: 1787 RTESVAEKMLSSWFTFLLYKFLRECAGEPLYLLFRAMKQQVDKGPVDAITAEARYSLSEE 1846
RTESV EKML++W + LYKFL+E AGEPL+LL++A+KQQ+DKGPVDA+T +ARY+L+E+
Sbjct: 120 RTESVVEKMLTNWMSICLYKFLKETAGEPLFLLYKAIKQQIDKGPVDAVTGKARYTLNED 179
Query: 1847 KLIRHAIDFKPMTVY-----------------------VKEKSLDTIYRATPYSLRPRKD 1883
KL+R I++KP+T+ VKEK LD +Y+ TPYS RPR +
Sbjct: 180 KLLREDIEYKPLTLNVIPQPEGDEAVPVKVLDCDTITQVKEKILDAVYKGTPYSQRPRAE 239
Query: 1884 DLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHYRVPDGGCLNLVSKQYNLSILSE 1943
DLD+EWR+G G +IL D D T+K EG WK++NTL HY+VPDG L LV KQ S +
Sbjct: 240 DLDLEWRSGRRGHVILSDEDVTSKSEGGWKRLNTLAHYKVPDGATLALVPKQA--SSYNN 297
Query: 1944 KTDKYETLNLSKMGRNTSPLNRDHDGMAKEWHLVKHHDSDNQKEGERS-----NKMVSEI 1998
+ + +P+ K WHLVK HD K+G R K + EI
Sbjct: 298 SLASSPDSS-----GSRTPMLTPDYESVKYWHLVKPHDEMEDKKGSRGSSGERKKAIPEI 352
Query: 1999 YLTRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVH 2058
YLTRLL+TKGTLQKFVDDLFE+I STA GSALPLA+KY FDFLD+QA HGI+DP+V+H
Sbjct: 353 YLTRLLSTKGTLQKFVDDLFESILSTA--GSALPLAVKYFFDFLDEQAEKHGISDPDVIH 410
Query: 2059 TWKSNSLPLRFWVNLIKNPNFVFDIHKSNIVDSCLSVVAQTFMDSCSTSDHRLGKDSPSS 2118
WK+NSLPLRFWVN+IKNP FVFDIHKS+ +D+CLSV+AQTFMD+CSTS+HRLGKDSPS+
Sbjct: 411 IWKTNSLPLRFWVNIIKNPQFVFDIHKSDSMDACLSVIAQTFMDACSTSEHRLGKDSPSN 470
Query: 2119 KLLYAKDIPAYKEWVERYYSDIKSMQAISDQDMNAMLAEESRLHNSEFSTNCALYELYTY 2178
KLLYAKDIP YK+ VERYY DI+ M +SDQ+MN LAEESR H++EF+T AL+ELY Y
Sbjct: 471 KLLYAKDIPRYKKMVERYYKDIRQMPPLSDQEMNTHLAEESRKHSNEFNTLVALHELYKY 530
Query: 2179 ASKYNEQL 2186
KY +Q+
Sbjct: 531 VVKYRDQI 538
|
This family features the C-terminal regions of various plexins. Plexins are receptors for semaphorins, and plexin signalling is important in path finding and patterning of both neurons and developing blood vessels. The cytoplasmic region, which has been called a SEX domain in some members of this family, is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins. This domain acts as a RasGAP domain. Length = 538 |
| >gnl|CDD|213350 cd12790, RasGAP_plexin_A, Ras-GTPase Activating Domain of type A plexins | Back alignment and domain information |
|---|
| >gnl|CDD|213344 cd12205, RasGAP_plexin, Ras-GTPase Activating Domain of plexins | Back alignment and domain information |
|---|
| >gnl|CDD|200497 cd11236, Sema_plexin_like, The Sema domain, a protein interacting module, of Plexins and MET-like receptor tyrosine kinases | Back alignment and domain information |
|---|
| >gnl|CDD|213347 cd12787, RasGAP_plexin_B, Ras-GTPase Activating Domain of type B plexins | Back alignment and domain information |
|---|
| >gnl|CDD|213350 cd12790, RasGAP_plexin_A, Ras-GTPase Activating Domain of type A plexins | Back alignment and domain information |
|---|
| >gnl|CDD|213353 cd12793, RasGAP_plexin_B1, Ras-GTPase Activating Domain of plexin-B1 | Back alignment and domain information |
|---|
| >gnl|CDD|213351 cd12791, RasGAP_plexin_B3, Ras-GTPase Activating Domain of plexin-B3 | Back alignment and domain information |
|---|
| >gnl|CDD|213348 cd12788, RasGAP_plexin_D1, Ras-GTPase Activating Domain of plexin-D1 | Back alignment and domain information |
|---|
| >gnl|CDD|213352 cd12792, RasGAP_plexin_B2, Ras-GTPase Activating Domain of plexin-B2 | Back alignment and domain information |
|---|
| >gnl|CDD|213349 cd12789, RasGAP_plexin_C1, Ras-GTPase Activating Domain of plexin-C1 | Back alignment and domain information |
|---|
| >gnl|CDD|213344 cd12205, RasGAP_plexin, Ras-GTPase Activating Domain of plexins | Back alignment and domain information |
|---|
| >gnl|CDD|200505 cd11244, Sema_plexin_A, The Sema domain, a protein interacting module, of Plexin A | Back alignment and domain information |
|---|
| >gnl|CDD|200534 cd11273, Sema_plexin_A3, The Sema domain, a protein interacting module, of Plexin A3 | Back alignment and domain information |
|---|
| >gnl|CDD|200533 cd11272, Sema_plexin_A2, The Sema domain, a protein interacting module, of Plexin A2 | Back alignment and domain information |
|---|
| >gnl|CDD|200532 cd11271, Sema_plexin_A1, The Sema domain, a protein interacting module, of Plexin A1 | Back alignment and domain information |
|---|
| >gnl|CDD|200537 cd11276, Sema_plexin_B2, The Sema domain, a protein interacting module, of Plexin B2 | Back alignment and domain information |
|---|
| >gnl|CDD|200535 cd11274, Sema_plexin_A4, The Sema domain, a protein interacting module, of Plexin A4 | Back alignment and domain information |
|---|
| >gnl|CDD|200506 cd11245, Sema_plexin_B, The Sema domain, a protein interacting module, of Plexin B | Back alignment and domain information |
|---|
| >gnl|CDD|213351 cd12791, RasGAP_plexin_B3, Ras-GTPase Activating Domain of plexin-B3 | Back alignment and domain information |
|---|
| >gnl|CDD|213347 cd12787, RasGAP_plexin_B, Ras-GTPase Activating Domain of type B plexins | Back alignment and domain information |
|---|
| >gnl|CDD|213353 cd12793, RasGAP_plexin_B1, Ras-GTPase Activating Domain of plexin-B1 | Back alignment and domain information |
|---|
| >gnl|CDD|214747 smart00630, Sema, semaphorin domain | Back alignment and domain information |
|---|
| >gnl|CDD|200536 cd11275, Sema_plexin_B1, The Sema domain, a protein interacting module, of Plexin B1 | Back alignment and domain information |
|---|
| >gnl|CDD|213352 cd12792, RasGAP_plexin_B2, Ras-GTPase Activating Domain of plexin-B2 | Back alignment and domain information |
|---|
| >gnl|CDD|213349 cd12789, RasGAP_plexin_C1, Ras-GTPase Activating Domain of plexin-C1 | Back alignment and domain information |
|---|
| >gnl|CDD|213348 cd12788, RasGAP_plexin_D1, Ras-GTPase Activating Domain of plexin-D1 | Back alignment and domain information |
|---|
| >gnl|CDD|200538 cd11277, Sema_plexin_B3, The Sema domain, a protein interacting module, of Plexin B3 | Back alignment and domain information |
|---|
| >gnl|CDD|200509 cd11248, Sema_MET_like, The Sema domain, a protein interacting module, of MET and RON receptor tyrosine kinases | Back alignment and domain information |
|---|
| >gnl|CDD|238585 cd01180, IPT_plexin_repeat1, First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) | Back alignment and domain information |
|---|
| >gnl|CDD|200539 cd11278, Sema_MET, The Sema domain, a protein interacting module, of MET (also called hepatocyte growth factor receptor, HGFR) | Back alignment and domain information |
|---|
| >gnl|CDD|200540 cd11279, Sema_RON, The Sema domain, a protein interacting module, of RON Receptor Tyrosine Kinase | Back alignment and domain information |
|---|
| >gnl|CDD|238584 cd01179, IPT_plexin_repeat2, Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) | Back alignment and domain information |
|---|
| >gnl|CDD|238584 cd01179, IPT_plexin_repeat2, Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) | Back alignment and domain information |
|---|
| >gnl|CDD|238337 cd00603, IPT_PCSR, IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200508 cd11247, Sema_plexin_D1, The Sema domain, a protein interacting module, of Plexin D1 | Back alignment and domain information |
|---|
| >gnl|CDD|216480 pfam01403, Sema, Sema domain | Back alignment and domain information |
|---|
| >gnl|CDD|238050 cd00102, IPT, Immunoglobulin-like fold, Plexins, Transcription factors (IPT) | Back alignment and domain information |
|---|
| >gnl|CDD|200495 cd09295, Sema, The Sema domain, a protein interacting module, of semaphorins and plexins | Back alignment and domain information |
|---|
| >gnl|CDD|238337 cd00603, IPT_PCSR, IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|214657 smart00429, IPT, ig-like, plexins, transcription factors | Back alignment and domain information |
|---|
| >gnl|CDD|238586 cd01181, IPT_plexin_repeat3, Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) | Back alignment and domain information |
|---|
| >gnl|CDD|238050 cd00102, IPT, Immunoglobulin-like fold, Plexins, Transcription factors (IPT) | Back alignment and domain information |
|---|
| >gnl|CDD|238337 cd00603, IPT_PCSR, IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|216504 pfam01437, PSI, Plexin repeat | Back alignment and domain information |
|---|
| >gnl|CDD|216730 pfam01833, TIG, IPT/TIG domain | Back alignment and domain information |
|---|
| >gnl|CDD|213328 cd04519, RasGAP, Ras GTPase Activating Domain | Back alignment and domain information |
|---|
| >gnl|CDD|214655 smart00423, PSI, domain found in Plexins, Semaphorins and Integrins | Back alignment and domain information |
|---|
| >gnl|CDD|238584 cd01179, IPT_plexin_repeat2, Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) | Back alignment and domain information |
|---|
| >gnl|CDD|238050 cd00102, IPT, Immunoglobulin-like fold, Plexins, Transcription factors (IPT) | Back alignment and domain information |
|---|
| >gnl|CDD|214655 smart00423, PSI, domain found in Plexins, Semaphorins and Integrins | Back alignment and domain information |
|---|
| >gnl|CDD|214657 smart00429, IPT, ig-like, plexins, transcription factors | Back alignment and domain information |
|---|
| >gnl|CDD|200533 cd11272, Sema_plexin_A2, The Sema domain, a protein interacting module, of Plexin A2 | Back alignment and domain information |
|---|
| >gnl|CDD|216504 pfam01437, PSI, Plexin repeat | Back alignment and domain information |
|---|
| >gnl|CDD|216730 pfam01833, TIG, IPT/TIG domain | Back alignment and domain information |
|---|
| >gnl|CDD|216730 pfam01833, TIG, IPT/TIG domain | Back alignment and domain information |
|---|
| >gnl|CDD|216730 pfam01833, TIG, IPT/TIG domain | Back alignment and domain information |
|---|
| >gnl|CDD|200496 cd11235, Sema_semaphorin, The Sema domain, a protein interacting module, of semaphorins | Back alignment and domain information |
|---|
| >gnl|CDD|200515 cd11254, Sema_3F, The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F) | Back alignment and domain information |
|---|
| >gnl|CDD|200512 cd11251, Sema_3C, The Sema domain, a protein interacting module, of semaphorin 3C (Sema3C) | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2400 | |||
| KOG3610|consensus | 1025 | 100.0 | ||
| PF08337 | 539 | Plexin_cytopl: Plexin cytoplasmic RasGAP domain; I | 100.0 | |
| KOG3611|consensus | 737 | 100.0 | ||
| smart00630 | 390 | Sema semaphorin domain. | 100.0 | |
| PF01403 | 433 | Sema: Sema domain; InterPro: IPR001627 The Sema do | 100.0 | |
| KOG3610|consensus | 1025 | 100.0 | ||
| cd01179 | 85 | IPT_plexin_repeat2 Second repeat of the IPT domain | 99.52 | |
| cd01180 | 94 | IPT_plexin_repeat1 First repeat of the IPT domain | 99.47 | |
| cd01181 | 99 | IPT_plexin_repeat3 Third repeat of the IPT domain | 99.44 | |
| cd01180 | 94 | IPT_plexin_repeat1 First repeat of the IPT domain | 99.43 | |
| cd01179 | 85 | IPT_plexin_repeat2 Second repeat of the IPT domain | 99.43 | |
| cd00603 | 90 | IPT_PCSR IPT domain of Plexins and Cell Surface Re | 99.24 | |
| cd01181 | 99 | IPT_plexin_repeat3 Third repeat of the IPT domain | 99.18 | |
| cd00603 | 90 | IPT_PCSR IPT domain of Plexins and Cell Surface Re | 99.16 | |
| cd00102 | 89 | IPT Immunoglobulin-like fold, Plexins, Transcripti | 99.15 | |
| smart00429 | 90 | IPT ig-like, plexins, transcription factors. | 99.07 | |
| cd00102 | 89 | IPT Immunoglobulin-like fold, Plexins, Transcripti | 99.05 | |
| smart00429 | 90 | IPT ig-like, plexins, transcription factors. | 98.96 | |
| PF01833 | 85 | TIG: IPT/TIG domain; InterPro: IPR002909 This fami | 98.92 | |
| PF01833 | 85 | TIG: IPT/TIG domain; InterPro: IPR002909 This fami | 98.88 | |
| cd01175 | 85 | IPT_COE IPT domain of the COE family (Col/Olf-1/EB | 98.74 | |
| cd01175 | 85 | IPT_COE IPT domain of the COE family (Col/Olf-1/EB | 98.6 | |
| cd02849 | 81 | CGTase_C_term Cgtase (cyclodextrin glycosyltransfe | 98.12 | |
| cd02849 | 81 | CGTase_C_term Cgtase (cyclodextrin glycosyltransfe | 98.12 | |
| cd00604 | 81 | IPT_CGTD IPT domain (domain D) of cyclodextrin gly | 98.02 | |
| cd00604 | 81 | IPT_CGTD IPT domain (domain D) of cyclodextrin gly | 97.96 | |
| TIGR03437 | 215 | Soli_cterm Solibacter uncharacterized C-terminal d | 96.87 | |
| cd05136 | 309 | RasGAP_DAB2IP The DAB2IP family of Ras GTPase-acti | 96.27 | |
| cd05392 | 323 | RasGAP_Neurofibromin_like Neurofibromin-like prote | 95.57 | |
| PF01437 | 51 | PSI: Plexin repeat; InterPro: IPR002165 This is a | 95.0 | |
| PF01437 | 51 | PSI: Plexin repeat; InterPro: IPR002165 This is a | 94.75 | |
| cd05128 | 315 | RasGAP_GAP1_like The GAP1 family of Ras GTPase-act | 94.4 | |
| cd01176 | 97 | IPT_RBP-Jkappa IPT domain of the recombination sig | 94.02 | |
| cd01176 | 97 | IPT_RBP-Jkappa IPT domain of the recombination sig | 93.06 | |
| smart00423 | 46 | PSI domain found in Plexins, Semaphorins and Integ | 90.93 | |
| smart00423 | 46 | PSI domain found in Plexins, Semaphorins and Integ | 90.73 | |
| cd01178 | 101 | IPT_NFAT IPT domain of the NFAT family of transcri | 90.22 | |
| TIGR03437 | 215 | Soli_cterm Solibacter uncharacterized C-terminal d | 89.46 | |
| smart00323 | 344 | RasGAP GTPase-activator protein for Ras-like GTPas | 88.5 | |
| cd00602 | 101 | IPT_TF IPT domain of eukaryotic transcription fact | 88.44 | |
| cd00602 | 101 | IPT_TF IPT domain of eukaryotic transcription fact | 88.32 | |
| cd01178 | 101 | IPT_NFAT IPT domain of the NFAT family of transcri | 84.65 |
| >KOG3610|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-204 Score=1964.36 Aligned_cols=989 Identities=44% Similarity=0.688 Sum_probs=908.3
Q ss_pred EEEeecccCCCCccccccCCCcccceecCCCCCccccccCCCCCCCcccCCCCCCCCeEEEEecCcccCCCCcEEEEEee
Q psy15505 860 VNIYRCRDLANNCGLCLALPEKYGCGWCQSSKRCEIFEQCDKGLGTWLNRNHTCPNPEITSFQPKSGPWEGGTNVTINGI 939 (2400)
Q Consensus 860 VtLYnCs~~~~dCs~Cl~ad~~y~C~WC~~~~~C~~~~~C~~~~~~w~~~~~~CP~P~ItsI~P~sGp~~GGT~VTI~Gs 939 (2400)
|.||+|..++.+|++|+++++++.|+||..++ ..++.|. |.+.+..||.|.|+.++|..||++|||.+||.|.
T Consensus 1 v~ly~c~~~~~~c~~cl~~~p~~~C~wc~~~~--~~~~~C~-----~~~v~~~c~~P~i~~~~P~~g~~eggt~iti~g~ 73 (1025)
T KOG3610|consen 1 VELYSCLRLAKDCALCLPASPVLLCGWCIRGS--KEAHACS-----EMNVNCVCPLPSITALSPLNGPIEGGTNISIVGT 73 (1025)
T ss_pred CeeeeccccccchhhhhccCccceeEEEeCCc--hhhhhcc-----cccCceecCCCcccceeeccccccCCceeeeeee
Confidence 47999999999999999999999999996665 7778895 5667779999999999999999999999999999
Q ss_pred cCCCccCCccceEEEeCeeeecccceeecccEEEEEeCCCCCCCCccccEEEEEc---ccccccccceEEeCcEEEEEec
Q psy15505 940 NLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIVCQVDGPGTRGSREGPVIVKIE---DFRGQSKDNYQFVDPVIKSIQP 1016 (2400)
Q Consensus 940 Nfg~~~~di~~~V~Vgg~~C~v~~~~y~~st~IvC~tpps~~~~~~~G~V~V~V~---~~~~~S~~~FtY~~P~ItsIsP 1016 (2400)
|||...+|+...+.|++.+|.+.++.|..+..|+|.+.++. . ..|+|.|+|. .+.+.++..|+|+.|.+.++.|
T Consensus 74 nlg~~~~dv~~~v~Va~v~c~~~~~~y~~~~~i~C~~~~~~--~-~~g~v~~~v~~~~~~~~~ss~~~s~~~~~~~~~~P 150 (1025)
T KOG3610|consen 74 NLGNSLNDVSDGVKVAGVRCSPVAEEYDCSPCIACSPGANG--S-WPGPINVAVGVTPYGPALSSCGSSLQGPCFLSAEP 150 (1025)
T ss_pred ehhhhhhhccCCceEeeeecCCCccccccccceeeccCCCC--C-CCCceeEEeccccccccccccceeecceeEEeecc
Confidence 99999999988999999999999999999999999988875 2 6789999987 3457889999999999999999
Q ss_pred CceecCCCcEEEEEeecCCCCCcEEEEECCc-eeEEEEecCce-EEEEcCCCCCCceeEeEeeeeEEEECCceeeeeccc
Q psy15505 1017 LQGPRSGGTILHISGSHMNAGSRIEAFIDDL-PCRITSVEPEM-AHCVTSASDRQRNGKLSESNTQHSFTELVQTLTCWD 1094 (2400)
Q Consensus 1017 ~~GP~sGGT~VTItGs~L~~gs~v~V~IG~~-~C~i~s~s~t~-I~C~Tp~~~~~~~v~V~~~~v~V~~d~~~~~~~C~~ 1094 (2400)
.+||.+|||.++|+|++|++|+.+.|.+|+. +|.+..+.+.. |.|+|++.......++. |.||+..+...
T Consensus 151 ~~Gp~~ggt~v~~~Gs~l~~gs~~~~vv~~~~~c~~~~~~~~~~~~c~t~~~~~~~~~~~~-----v~f~~~~~~~~--- 222 (1025)
T KOG3610|consen 151 VNGPASGGTQVHCTGSPLDTGSCPDCVVSGLGPCVISVVQDSAVIFCVTSSQGAGSEAPVL-----VSFDRTPQKLT--- 222 (1025)
T ss_pred CcCCCCCCcceEEeccccccCCCceEEecCCccceeEeecCceEEEEecCCCCCCCccceE-----EEecccccccC---
Confidence 9999999999999999999999999999999 99999987776 99999999887888888 99999887664
Q ss_pred cCCCCCCCcCccCCCCcCCCCCCCceeecCCcccccccCCccceEEEEecCccccCCCcEEEEccccCCCCCCcccccee
Q psy15505 1095 CLNRKDPYCGWCSLDNKCSLRSDCQDAAKDPLSWISYKSGRCTTITSVTPNQLQRTTARTLDLAIENLPKLPGQFLCAFT 1174 (2400)
Q Consensus 1095 c~~~~dpycgwC~l~~rCs~~~~cF~Y~~~P~~w~s~~~~~c~~ItsI~P~~g~~sGGt~Iti~~~~~p~l~~~~~C~f~ 1174 (2400)
... |.|+.|| ++.+|.|..++.+||+.|+
T Consensus 223 --~~~-------------------f~y~~dp------------s~~~i~P~~si~~gg~~i~------------------ 251 (1025)
T KOG3610|consen 223 --PLA-------------------FNYTADP------------SYSSVLPATSIKYGGRFIT------------------ 251 (1025)
T ss_pred --CCC-------------------cccccCC------------cceeccceeeEeeCCEEEE------------------
Confidence 455 9999999 9999999999999999999
Q ss_pred cccccceeceEEecCCceeeCCCCCCCCceeeeccceeeEEeeccCCCCCcccceeeeccCCCCcceEEecCCCCCcccc
Q psy15505 1175 IAEKTLTTEAVKKTNGVGCITPRTDFLPSIPVGQHNITAKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDCI 1254 (2400)
Q Consensus 1175 ~~~~~~~~~~V~Gsnf~~~q~P~~~~~P~~~v~~d~v~v~l~~~~~~~~~~~~~~~~~~~c~~~~~C~~~~~t~~pc~~~ 1254 (2400)
|.|++|+.||+ |++.+ +. .+..+ .+.|.+++++
T Consensus 252 ----------v~G~~f~tVQ~------~~i~~-------~~-----~~~~~------------~~~c~i~~~t------- 284 (1025)
T KOG3610|consen 252 ----------VNGTYFLTVQR------PRLDV-------QT-----SGLRR------------IRACSINNGT------- 284 (1025)
T ss_pred ----------EeeeeeeeccC------ceEEe-------ec-----cceee------------cccccccccc-------
Confidence 99999999999 88877 33 12111 2679999988
Q ss_pred cccccCCcEEEecCCcccCCCCCCCCCCCCCCCCCCCcccccchhhhhhccccccccccccccccCCCceeeeeeecCcc
Q psy15505 1255 KCCQLLGDVIYCDPMEFTLTPRDYPISTPRLPMSGFSHNCGLCLRAREKLDAAGVSSKYSATARSLDPRVVTILHISGSH 1334 (2400)
Q Consensus 1255 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1334 (2400)
.|.|. +|.++.+. . ++.+.
T Consensus 285 --------~~~c~--------------~P~~~~~~------~-~~~~~-------------------------------- 303 (1025)
T KOG3610|consen 285 --------YMECQ--------------TPLIFIPK------R-RRGTI-------------------------------- 303 (1025)
T ss_pred --------ceeee--------------cccccCCc------c-ccccc--------------------------------
Confidence 99999 98887553 1 11110
Q ss_pred cccceeeeeEEEecCCccccccccccccCCCcccccccccccccccccccccccccCccccccccccccCCccccccCCC
Q psy15505 1335 MNAAVSLLKHFMMDPPMSAVTSVSREMAPWRKPLRQKTAGMAKLQYEASVDCWHRIPEQGMQYPRMRSRHGWHTYQCGGK 1414 (2400)
Q Consensus 1335 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 1414 (2400)
. ...+++|++|+.
T Consensus 304 --~-~~~~~~fl~d~~---------------------------------------------------------------- 316 (1025)
T KOG3610|consen 304 --E-RKVEYTFLQDAQ---------------------------------------------------------------- 316 (1025)
T ss_pred --c-cceeeeEEeech----------------------------------------------------------------
Confidence 1 445667777751
Q ss_pred CCCccccCCCCceeeccCcccccccccccccccccccceeeecccCCccEEEecCcCCCCcceeccccccc-eeccCCce
Q psy15505 1415 NPPVYIKDPPHFHVVYQDKKFCQLCEVNEVTYSYDLYRTTITGALDKMMKYRASSHLAGSYGFEMDNVTKE-IKYYKSDY 1493 (2400)
Q Consensus 1415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Y~p~~~~~~dp~f~~~~~~~~-~~~~~g~~ 1493 (2400)
.....+|.|+| ||.|++ |.++ ....+++.
T Consensus 317 ------------------------------------------~~~~~~f~~~~------dp~f~~--f~~~~~~~~p~~~ 346 (1025)
T KOG3610|consen 317 ------------------------------------------LARQIGFSYYP------DPLFGV--FAQSKDSHKPGER 346 (1025)
T ss_pred ------------------------------------------hhcccCceecC------CceEEe--ecccccccCCCCe
Confidence 01223699999 999999 8754 56788899
Q ss_pred EEEeeeccCcccccceeeEEEeceeeeEEEecCceEEEeCCCCCCCCCCCCCCccCCCCcEEEEEcCceEEEeeeEEecC
Q psy15505 1494 LTINGQHLDRASQESDVIVKIGTGFCNVTSVSRLQLTCRPPAEQPPNKNDDDESTAELPDVTVIVGNNLKFYIGKLSYSP 1573 (2400)
Q Consensus 1494 LtI~G~nL~~a~~~~dv~V~IG~~~C~V~~ls~~~L~C~pP~~qp~~~~~~~~~~~~~~~v~V~vG~~l~~~~G~v~y~~ 1573 (2400)
++++|.||+++.++.|+.|+||+++|.++.++++|++|++|..+|.+ +.++|++| +++|.+|.++|++
T Consensus 347 ~~~~g~nl~l~~~~~~~~v~ig~~~C~~t~l~~~~l~c~~p~~~p~~-----------~~~~v~~g-~~~~~~g~l~~~s 414 (1025)
T KOG3610|consen 347 SVVCGFNINLADPFFDFIVEIGNVRCLVTFLTRNQLHCQPPSLTPNS-----------PGLEARMG-NLEYKLGLLVYSS 414 (1025)
T ss_pred eeeeccccccCCCCcceEEEEcCcccceeecccCceeecChhhCCCC-----------CCeEEEcC-ceEEecCcEEEec
Confidence 99999999999999999999999999999999999999999999765 33999999 9999999999987
Q ss_pred CCCCCCCcceeeeecccccCCCcccCCCcccceEEeehhhHHHHHHHHHhhheeeeccchHhHHHHHHHHHHHHHHHHHH
Q psy15505 1574 PAALNSPLTKTAIVGKLSYSPPAALNSPLTKTAMYGGIAIITILFLIFIAFLIAYRRKSTENTRVLKNMQEQMDILELRV 1653 (2400)
Q Consensus 1574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~li~~~~~~~yrrks~~~~r~~k~~~~qme~lE~~V 1653 (2400)
...+.+ . +++++++++++++++++|+++.+|+||++|++|+++|+|.|||+||++|
T Consensus 415 ----~~~~~~-------------------~-~~~~~~~~~~~~~~l~~i~~~~~~~~k~~~s~~~~~~~~~qmdnlE~~v 470 (1025)
T KOG3610|consen 415 ----ESLLSL-------------------F-QAVLLISIGLFLLVLLVIAVLLMSKRKSSQSQVELRKPQTQLDNLENDV 470 (1025)
T ss_pred ----ccccch-------------------h-hhHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHHh
Confidence 333322 0 2677888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccccccCCCCCCCccChHhHhhhccCCCCCCCcccccCCchhhhHHHHHHHHHhhccCchhHhHH
Q psy15505 1654 AAECKEAFAELQTEITDLTGDLTSGGIPFLDYRTYAMMILFPNSEHHAVLQFERPELLHKEKGLRLFGQLIQNKTFLLLF 1733 (2400)
Q Consensus 1654 ~~eck~~FaeLqt~m~dl~~dl~~~giPfldy~~y~~~~~Fp~~~~~p~~~~~~~~~~~~~~~l~~f~~ll~~k~Fl~~f 1733 (2400)
++|||||||||||||+|++.++.+.+|||||||+|++|+|||+. +++++.+|++||++|.||.+|
T Consensus 471 ~~ecke~Faelqt~~~d~t~~~~~~~i~fl~yr~~~~R~~fp~~---------------~~~~l~~~~~ll~~k~Fl~t~ 535 (1025)
T KOG3610|consen 471 IKECKEAFAELQTDLNDYTLSLTGGNIPFLPYRGYGCRIFFPGG---------------VEMGLQICGQLLVNKKFLLTS 535 (1025)
T ss_pred hhhhhhhhhhccccCceeEEeeccCCcceEeecCceeeeecCcc---------------ccchhHHHHHHhcccccccce
Confidence 99999999999999999999999999999999999999999997 679999999999999999999
Q ss_pred HHhhccCCCCCcccchhhHHHHHHHHHH-------HHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhH
Q psy15505 1734 IRTLESNRYFSMRDRVNVASLIMVTLQN-------ILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLSSWFTFLLYK 1806 (2400)
Q Consensus 1734 i~tlE~q~~fs~rdr~~~aSLl~v~l~~-------il~~Ll~~li~~~~~~~~~pkl~lRrtEsvvEkmltnW~s~~ly~ 1806 (2400)
|||+|.|++|++|||++||||+|+|||+ +|+.|+.+||++.+++|+|||||||||||||||||+|||++|||.
T Consensus 536 i~t~e~~~sfs~~~r~~vasl~~~aLq~~l~Ylt~~l~~l~~~l~~~~~~~k~~pkl~lrrtesvvekmls~w~~~~l~~ 615 (1025)
T KOG3610|consen 536 WHTDECVPSFSERSRTSVASLLTLALQGSLAYLTPILGVLLGDLIEKVVQSKRNPKLMLRRTESVVEKMLSNWMSFCLYE 615 (1025)
T ss_pred eeeeccccccccccchhhHHHHHHHHHhhcccccccccccHHhHHhhhcccccCcchhhcccchhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCchhHHHHHHHHccccccCcceeecccccccchhhhhcccceeeeEEee-----------------------ec
Q psy15505 1807 FLRECAGEPLYLLFRAMKQQVDKGPVDAITAEARYSLSEEKLIRHAIDFKPMTVY-----------------------VK 1863 (2400)
Q Consensus 1807 ~l~~~ag~pl~~L~~aik~QvekGPvDaitg~ArytL~e~~Llr~~i~~~~l~l~-----------------------vK 1863 (2400)
|||+++|||||+||+|||+|++|||||++||+|||||||++|||+++||+++++. ||
T Consensus 616 ~l~~~~gepl~~L~~~i~~q~~kgpvd~~t~~a~ySl~e~~Llr~s~~~~p~~~~~~l~l~~~~~v~~~v~~cdtI~q~k 695 (1025)
T KOG3610|consen 616 FLRECAGEPLYMLHCAIKQQISKGPVDATTGKARYSLNEPVLLRVSPEYGPLAGGVLLTLGGGQSVPVKVLDCDTISQVK 695 (1025)
T ss_pred HHhhccCccHHHhhhhhhcccCCCccccccccceEeeccCeeeeccccccccccceeeccCCCcceeeeeeccceeeecc
Confidence 9999999999999999999999999999999999999999999999999988755 99
Q ss_pred hhhHHhhhccCCCCCCCCCCCcceEEeeCCCCcEEEecCCCCceeeCceEEEeeccCCCCCCCcEEEEEeeecccccccc
Q psy15505 1864 EKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHYRVPDGGCLNLVSKQYNLSILSE 1943 (2400)
Q Consensus 1864 eKild~~yk~~p~s~rp~~~~~dlew~~~~~~~~~L~d~D~ts~~~~~w~rlNTl~hY~v~d~a~~~l~~~~~~~~~~~~ 1943 (2400)
|||||++|++.|++|||++.+++|||+.|..|+++|+|+|.|++.+++|+||||++||+||||+++.|+|+++.....
T Consensus 696 ~k~l~~~~~~~~~~~~p~~~~~~le~~~g~~~~~~l~d~d~ts~~~~~~~~l~tl~hy~v~~gst~~lvp~~~~~~~~-- 773 (1025)
T KOG3610|consen 696 EKCLLASYSGGPLSQRPPPQTIDLEWRVGLRGGIILQDEDLTSQLSGRWDPLNTLIHYNVPDGSTHILVPLQVSAFSH-- 773 (1025)
T ss_pred cchhhhHhcCCccccCCCCcceEEEEecCCccccccccchhhhhhhccCcccccccccCCCCCceEEEeccchhhhhh--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999653100
Q ss_pred CCCcccccccccccCCCCCCccCCCCCceeEEeecCCCCCccccCcCCcccchhHHhhhhhccccchhhhhHhHHhhhhc
Q psy15505 1944 KTDKYETLNLSKMGRNTSPLNRDHDGMAKEWHLVKHHDSDNQKEGERSNKMVSEIYLTRLLATKGTLQKFVDDLFETIFS 2023 (2400)
Q Consensus 1944 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HLvk~~~~~~~~~~~~~~k~i~EiyltrLls~Kgtlq~fvdd~f~~i~~ 2023 (2400)
....|. ...+++|+..++.++|.|+|||||++++..+ +|+|+||||||||+||||+||||||||++||+
T Consensus 774 ~~~~~~-----s~~~~~~~~~~~~~~~~~~~hlv~~~~~~~~------~k~V~eiyltrlls~kGtlq~~v~~l~~~i~s 842 (1025)
T KOG3610|consen 774 LLSSFD-----SGGSRTPTRCEKNLNGVKLWHLVKPVDEAGQ------KKTVAEIYLTRLLSTKGTLQKFVQDLFQSILS 842 (1025)
T ss_pred hhhhhc-----cccccccccccccCCcceeeecccccccccc------ccchhHHHHhhhhhccccHHHHHHhccccccc
Confidence 000111 1245789999999999999999999998876 59999999999999999999999999999999
Q ss_pred cCcCCCCCCcchhhhhhccHHHHHhcCCCCchhhcccccCCCcceeeeecccCCCeeeeeccCCCCCcceeeehhhhccc
Q psy15505 2024 TAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRFWVNLIKNPNFVFDIHKSNIVDSCLSVVAQTFMDS 2103 (2400)
Q Consensus 2024 ~~~~~~~~P~aiKy~FDflD~~A~~~~i~d~~~~h~WKtN~lpLRFWvn~ikNp~fvfDi~~s~~vd~~lsviaqtfmda 2103 (2400)
++++ .+|+|||||||||||||++|||+||+++|+||+|+||||||||||||||||||++++..+|+|||||||||||+
T Consensus 843 t~~~--~~P~a~Ky~Fd~ldeqA~~~~i~dp~v~~~wksn~LplR~wvni~knP~~vfd~~~~~~~d~clsviaqt~md~ 920 (1025)
T KOG3610|consen 843 TADS--LVPIAHKYFFDFLDEQAVFHGIEDPDVIHIWKSNSLPLRFWVNIIKNPQFVFDIQKSVGNDACLSVIAQTFMDL 920 (1025)
T ss_pred cccc--cCchHHHHHHHHhhhhhhccCCCCcceeeecccceeeEeeeeeeecChhhhcCccccccchhHHHHHHHHHhhc
Confidence 9984 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccCCCCCCccccccccchhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHhhH
Q psy15505 2104 CSTSDHRLGKDSPSSKLLYAKDIPAYKEWVERYYSDIKSMQAISDQDMNAMLAEESRLHNSEFSTNCALYELYTYASKYN 2183 (2400)
Q Consensus 2104 cs~se~~lgkdspsnklLyakdip~yk~~v~~yy~~I~~~p~~s~qem~~~l~~~s~~~~~~f~~~~al~ely~y~~~y~ 2183 (2400)
||++||+||||||+||||||||||+||.||++||++|++||++++||||++|+++|+.|.++||.+.||+|||+|+.||+
T Consensus 921 cs~~e~~l~~~sp~nkLlyakdi~~y~~~v~~y~~~ir~~~~i~~~~m~~~l~~~s~~h~~~~~~~~al~el~s~~~~y~ 1000 (1025)
T KOG3610|consen 921 CSTSEHKLGKDSPSNKLLYAKDIPEYKAGVVVYYKDIRFTPPISDQEMNSTLALLSRAHATELNKLVALSELYSYLVKYD 1000 (1025)
T ss_pred ccCccccccccCcchhhhHhhhHHHhhhheeehhhhhhhcCccchhhHHHHHHHHhhccCCccchhhhhHHHHHHHhhch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcChhhHhhhHHHHHHHH
Q psy15505 2184 EQLTVTLEEDEFSQKQRLAYKLEQK 2208 (2400)
Q Consensus 2184 ~~i~~~L~~d~~~~~~~l~~~l~~v 2208 (2400)
++|+++||+|+.+++++|+.||||+
T Consensus 1001 ~~i~~~l~~d~~~~~~~l~~~le~v 1025 (1025)
T KOG3610|consen 1001 DRILTALEEDEGASKSRLAPKLEQV 1025 (1025)
T ss_pred hhhhhhhhccchhhhhcCcchhcCC
Confidence 9999999999999999999999985
|
|
| >PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e | Back alignment and domain information |
|---|
| >KOG3611|consensus | Back alignment and domain information |
|---|
| >smart00630 Sema semaphorin domain | Back alignment and domain information |
|---|
| >PF01403 Sema: Sema domain; InterPro: IPR001627 The Sema domain occurs in semaphorins, which are a large family of secreted and transmembrane proteins, some of which function as repellent signals during axon guidance | Back alignment and domain information |
|---|
| >KOG3610|consensus | Back alignment and domain information |
|---|
| >cd01179 IPT_plexin_repeat2 Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) | Back alignment and domain information |
|---|
| >cd01180 IPT_plexin_repeat1 First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) | Back alignment and domain information |
|---|
| >cd01181 IPT_plexin_repeat3 Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) | Back alignment and domain information |
|---|
| >cd01180 IPT_plexin_repeat1 First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) | Back alignment and domain information |
|---|
| >cd01179 IPT_plexin_repeat2 Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) | Back alignment and domain information |
|---|
| >cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins | Back alignment and domain information |
|---|
| >cd01181 IPT_plexin_repeat3 Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) | Back alignment and domain information |
|---|
| >cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins | Back alignment and domain information |
|---|
| >cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT) | Back alignment and domain information |
|---|
| >smart00429 IPT ig-like, plexins, transcription factors | Back alignment and domain information |
|---|
| >cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT) | Back alignment and domain information |
|---|
| >smart00429 IPT ig-like, plexins, transcription factors | Back alignment and domain information |
|---|
| >PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold | Back alignment and domain information |
|---|
| >PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold | Back alignment and domain information |
|---|
| >cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors | Back alignment and domain information |
|---|
| >cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors | Back alignment and domain information |
|---|
| >cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain | Back alignment and domain information |
|---|
| >cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain | Back alignment and domain information |
|---|
| >cd00604 IPT_CGTD IPT domain (domain D) of cyclodextrin glycosyltransferase (CGTase) and similar enzymes | Back alignment and domain information |
|---|
| >cd00604 IPT_CGTD IPT domain (domain D) of cyclodextrin glycosyltransferase (CGTase) and similar enzymes | Back alignment and domain information |
|---|
| >TIGR03437 Soli_cterm Solibacter uncharacterized C-terminal domain | Back alignment and domain information |
|---|
| >cd05136 RasGAP_DAB2IP The DAB2IP family of Ras GTPase-activating proteins includes DAB2IP, nGAP, and Syn GAP | Back alignment and domain information |
|---|
| >cd05392 RasGAP_Neurofibromin_like Neurofibromin-like proteins include the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2, the closest homolog of neurofibromin, which is responsible for the human autosomal dominant disease neurofibromatosis type I (NF1) | Back alignment and domain information |
|---|
| >PF01437 PSI: Plexin repeat; InterPro: IPR002165 This is a cysteine rich repeat found in several different extracellular receptors | Back alignment and domain information |
|---|
| >PF01437 PSI: Plexin repeat; InterPro: IPR002165 This is a cysteine rich repeat found in several different extracellular receptors | Back alignment and domain information |
|---|
| >cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1 | Back alignment and domain information |
|---|
| >cd01176 IPT_RBP-Jkappa IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa) | Back alignment and domain information |
|---|
| >cd01176 IPT_RBP-Jkappa IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa) | Back alignment and domain information |
|---|
| >smart00423 PSI domain found in Plexins, Semaphorins and Integrins | Back alignment and domain information |
|---|
| >smart00423 PSI domain found in Plexins, Semaphorins and Integrins | Back alignment and domain information |
|---|
| >cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors | Back alignment and domain information |
|---|
| >TIGR03437 Soli_cterm Solibacter uncharacterized C-terminal domain | Back alignment and domain information |
|---|
| >smart00323 RasGAP GTPase-activator protein for Ras-like GTPases | Back alignment and domain information |
|---|
| >cd00602 IPT_TF IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa) | Back alignment and domain information |
|---|
| >cd00602 IPT_TF IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa) | Back alignment and domain information |
|---|
| >cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2400 | ||||
| 3ryt_A | 626 | The Plexin A1 Intracellular Region In Complex With | 0.0 | ||
| 3ig3_A | 627 | Crystal Strucure Of Mouse Plexin A3 Intracellular D | 0.0 | ||
| 3hm6_X | 644 | Crystal Structure Of The Cytoplasmic Domain Of Huma | 1e-153 | ||
| 3sua_D | 633 | Crystal Structure Of The Intracellular Domain Of Pl | 1e-153 | ||
| 3su8_X | 611 | Crystal Structure Of A Truncated Intracellular Doma | 1e-148 | ||
| 3okt_A | 681 | Mouse Plexin A2, Extracellular Domains 1-4 Length = | 1e-49 | ||
| 3okt_A | 681 | Mouse Plexin A2, Extracellular Domains 1-4 Length = | 2e-18 | ||
| 3al8_B | 539 | Plexin A2 SEMAPHORIN 6A COMPLEX Length = 539 | 1e-49 | ||
| 3al8_B | 539 | Plexin A2 SEMAPHORIN 6A COMPLEX Length = 539 | 2e-05 | ||
| 3ol2_B | 528 | Receptor-Ligand Structure Of Human Semaphorin 4d Wi | 5e-28 | ||
| 3ol2_B | 528 | Receptor-Ligand Structure Of Human Semaphorin 4d Wi | 1e-05 | ||
| 2uzx_B | 727 | Structure Of The Human Receptor Tyrosine Kinase Met | 3e-24 | ||
| 2uzx_B | 727 | Structure Of The Human Receptor Tyrosine Kinase Met | 6e-15 | ||
| 1shy_B | 551 | The Crystal Structure Of Hgf Beta-Chain In Complex | 8e-23 | ||
| 4e74_A | 117 | Crystal Structure Of The Rho Gtpase Binding Domain | 6e-20 | ||
| 3q3j_A | 112 | Crystal Structure Of Plexin A2 Rbd In Complex With | 4e-18 | ||
| 2r2o_A | 138 | Crystal Structure Of The Effector Domain Of Human P | 2e-16 | ||
| 2rex_A | 121 | Crystal Structure Of The Effector Domain Of Plxnb1 | 2e-16 | ||
| 2jph_A | 123 | Nmr Solution Structure Of The Rho Gtpase Binding Do | 3e-15 | ||
| 4e71_A | 111 | Crystal Structure Of The Rho Gtpase Binding Domain | 3e-13 | ||
| 3h6n_A | 127 | Crystal Structure Of The Ubiquitin-Like Domain Of P | 9e-11 | ||
| 4fww_A | 527 | Crystal Structure Of The Sema-Psi Extracellular Dom | 1e-06 | ||
| 3nvq_A | 590 | Molecular Mechanism Of Guidance Cue Recognition Len | 2e-04 |
| >pdb|3RYT|A Chain A, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 626 | Back alignment and structure |
|
| >pdb|3IG3|A Chain A, Crystal Strucure Of Mouse Plexin A3 Intracellular Domain Length = 627 | Back alignment and structure |
| >pdb|3HM6|X Chain X, Crystal Structure Of The Cytoplasmic Domain Of Human Plexin B1 Length = 644 | Back alignment and structure |
| >pdb|3SUA|D Chain D, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 633 | Back alignment and structure |
| >pdb|3SU8|X Chain X, Crystal Structure Of A Truncated Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 611 | Back alignment and structure |
| >pdb|3OKT|A Chain A, Mouse Plexin A2, Extracellular Domains 1-4 Length = 681 | Back alignment and structure |
| >pdb|3OKT|A Chain A, Mouse Plexin A2, Extracellular Domains 1-4 Length = 681 | Back alignment and structure |
| >pdb|3AL8|B Chain B, Plexin A2 SEMAPHORIN 6A COMPLEX Length = 539 | Back alignment and structure |
| >pdb|3AL8|B Chain B, Plexin A2 SEMAPHORIN 6A COMPLEX Length = 539 | Back alignment and structure |
| >pdb|3OL2|B Chain B, Receptor-Ligand Structure Of Human Semaphorin 4d With Plexin B1 Length = 528 | Back alignment and structure |
| >pdb|3OL2|B Chain B, Receptor-Ligand Structure Of Human Semaphorin 4d With Plexin B1 Length = 528 | Back alignment and structure |
| >pdb|2UZX|B Chain B, Structure Of The Human Receptor Tyrosine Kinase Met In Complex With The Listeria Monocytogenes Invasion Protein Inlb: Crystal Form I Length = 727 | Back alignment and structure |
| >pdb|2UZX|B Chain B, Structure Of The Human Receptor Tyrosine Kinase Met In Complex With The Listeria Monocytogenes Invasion Protein Inlb: Crystal Form I Length = 727 | Back alignment and structure |
| >pdb|1SHY|B Chain B, The Crystal Structure Of Hgf Beta-Chain In Complex With The Sema Domain Of The Met Receptor Length = 551 | Back alignment and structure |
| >pdb|4E74|A Chain A, Crystal Structure Of The Rho Gtpase Binding Domain Of Plexin A4a Length = 117 | Back alignment and structure |
| >pdb|3Q3J|A Chain A, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 112 | Back alignment and structure |
| >pdb|2R2O|A Chain A, Crystal Structure Of The Effector Domain Of Human Plexin B1 Length = 138 | Back alignment and structure |
| >pdb|2REX|A Chain A, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 121 | Back alignment and structure |
| >pdb|2JPH|A Chain A, Nmr Solution Structure Of The Rho Gtpase Binding Domain Of Human Plexin-B1 Length = 123 | Back alignment and structure |
| >pdb|4E71|A Chain A, Crystal Structure Of The Rho Gtpase Binding Domain Of Plexin B2 Length = 111 | Back alignment and structure |
| >pdb|3H6N|A Chain A, Crystal Structure Of The Ubiquitin-Like Domain Of Plexin D1 Length = 127 | Back alignment and structure |
| >pdb|4FWW|A Chain A, Crystal Structure Of The Sema-Psi Extracellular Domains Of Human Ron Receptor Tyrosine Kinase Length = 527 | Back alignment and structure |
| >pdb|3NVQ|A Chain A, Molecular Mechanism Of Guidance Cue Recognition Length = 590 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A* Length = 627 | Back alignment and structure |
|---|
Score = 779 bits (2012), Expect = 0.0
Identities = 364/618 (58%), Positives = 447/618 (72%), Gaps = 43/618 (6%)
Query: 1632 STENTRVLKNMQEQMDILELRVAAECKEAFAELQTEITDLTGDLTSGGIPFLDYRTYAMM 1691
+ + R LK +Q QMD LE RVA ECKEAFAELQT+I +LT + IPFLDYRTYA+
Sbjct: 2 TQDADRTLKRLQLQMDNLESRVALECKEAFAELQTDINELTNHMDGVQIPFLDYRTYAVR 61
Query: 1692 ILFPNSEHHAVLQFERPELLHKEKGLRLFGQLIQNKTFLLLFIRTLESNRYFSMRDRVNV 1751
+LFP E H VL+ E + EK LRLFGQL+ ++ FLL FI TLE+ FSMRDR V
Sbjct: 62 VLFPGIEAHPVLK-ELDTPPNVEKALRLFGQLLHSRAFLLTFIHTLEAQSSFSMRDRGTV 120
Query: 1752 ASLIMVTLQ-------NILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLSSWFTFLL 1804
ASL MV LQ +LK LLA+LIEK +E K+HPKLLLRRTESVAEKML++WFTFLL
Sbjct: 121 ASLTMVALQSRLDYATGLLKQLLADLIEKNLESKNHPKLLLRRTESVAEKMLTNWFTFLL 180
Query: 1805 YKFLRECAGEPLYLLFRAMKQQVDKGPVDAITAEARYSLSEEKLIRHAIDFKPMTVYV-- 1862
+KFL+ECAGEPL+LL+ A+KQQ++KGP+DAIT EARYSLSE+KLIR ID+K +T++
Sbjct: 181 HKFLKECAGEPLFLLYCAIKQQMEKGPIDAITGEARYSLSEDKLIRQQIDYKTLTLHCVC 240
Query: 1863 ----------------------KEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILY 1900
K+K LDT+Y+ PYS RP+ +D+D+EWR G R+IL
Sbjct: 241 PESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQ 300
Query: 1901 DYDSTTKVEGEWKKVNTLNHYRVPDGGCLNLVSKQ---YNLSILSEKTD---KYETLNLS 1954
D D TTK+E +WK+VN+L HY+V DG + LV KQ YN++ T +YE+L +
Sbjct: 301 DEDITTKIECDWKRVNSLAHYQVTDGSLVALVPKQVSAYNMANSFTFTRSLSRYESLLRA 360
Query: 1955 KMG-----RNTSPLNRDHDGMAKEWHLVKHHDSDNQKEGERSNKMVSEIYLTRLLATKGT 2009
L D + K WHLV++HD + +EG+R +KMVSEIYLTRLLATKGT
Sbjct: 361 ASSPDSLRSRAPMLTPDQEAGTKLWHLVRNHDHTDHREGDRGSKMVSEIYLTRLLATKGT 420
Query: 2010 LQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRF 2069
LQKFVDDLFET+FSTAHRGSALPLAIKYMFDFLD+QA I+DP+V HTWKSN LPLRF
Sbjct: 421 LQKFVDDLFETVFSTAHRGSALPLAIKYMFDFLDEQADQRQISDPDVRHTWKSNCLPLRF 480
Query: 2070 WVNLIKNPNFVFDIHKSNIVDSCLSVVAQTFMDSCSTSDHRLGKDSPSSKLLYAKDIPAY 2129
WVN+IKNP FVFDIHK++I D+CLSVVAQTFMDSCSTS+HRLGKDSPS+KLLYAKDIP Y
Sbjct: 481 WVNVIKNPQFVFDIHKNSITDACLSVVAQTFMDSCSTSEHRLGKDSPSNKLLYAKDIPNY 540
Query: 2130 KEWVERYYSDIKSMQAISDQDMNAMLAEESRLHNSEFSTNCALYELYTYASKYNEQLTVT 2189
K WVERYY DI M +ISDQDM+A L E+SRLH ++F+ AL ELY Y +KY +++ +
Sbjct: 541 KSWVERYYRDIAKMASISDQDMDAYLVEQSRLHANDFNVLSALSELYFYVTKYRQEILTS 600
Query: 2190 LEEDEFSQKQRLAYKLEQ 2207
L+ D +K +L KLEQ
Sbjct: 601 LDRDASCRKHKLRQKLEQ 618
|
| >3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X* Length = 644 | Back alignment and structure |
|---|
| >3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X* Length = 644 | Back alignment and structure |
|---|
| >2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A Length = 727 | Back alignment and structure |
|---|
| >2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A Length = 727 | Back alignment and structure |
|---|
| >2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A Length = 727 | Back alignment and structure |
|---|
| >2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A Length = 727 | Back alignment and structure |
|---|
| >3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* Length = 681 | Back alignment and structure |
|---|
| >3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* Length = 681 | Back alignment and structure |
|---|
| >3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B* Length = 539 | Back alignment and structure |
|---|
| >3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B* Length = 539 | Back alignment and structure |
|---|
| >4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
| >4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
| >3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB: 3nvq_B* Length = 476 | Back alignment and structure |
|---|
| >3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB: 3nvq_B* Length = 476 | Back alignment and structure |
|---|
| >3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens} Length = 528 | Back alignment and structure |
|---|
| >3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens} Length = 528 | Back alignment and structure |
|---|
| >3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens} Length = 528 | Back alignment and structure |
|---|
| >2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A Length = 138 | Back alignment and structure |
|---|
| >4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A* Length = 117 | Back alignment and structure |
|---|
| >3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A* Length = 565 | Back alignment and structure |
|---|
| >3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A* Length = 565 | Back alignment and structure |
|---|
| >3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590 | Back alignment and structure |
|---|
| >1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1 Length = 495 | Back alignment and structure |
|---|
| >3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens} Length = 126 | Back alignment and structure |
|---|
| >4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens} Length = 111 | Back alignment and structure |
|---|
| >3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens} Length = 127 | Back alignment and structure |
|---|
| >1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663 | Back alignment and structure |
|---|
| >1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A Length = 99 | Back alignment and structure |
|---|
| >1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A Length = 99 | Back alignment and structure |
|---|
| >3nvx_A Protein A39; beta-propeller, viral protein; HET: NAG; 2.00A {Vaccinia virus} PDB: 3nvn_A* Length = 383 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A Length = 138 | Back alignment and structure |
|---|
| >3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A Length = 138 | Back alignment and structure |
|---|
| >3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A Length = 138 | Back alignment and structure |
|---|
| >3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A Length = 402 | Back alignment and structure |
|---|
| >3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A Length = 402 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3orj_A Sugar-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.16A {Bacteroides ovatus} Length = 439 | Back alignment and structure |
|---|
| >3orj_A Sugar-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.16A {Bacteroides ovatus} Length = 439 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2400 | |||
| 3ig3_A | 627 | Plxna3 protein; plexin intracellular GAP RBD inact | 100.0 | |
| 3hm6_X | 644 | Plexin-B1; structural genomics consortium, SGC, me | 100.0 | |
| 2uzx_B | 727 | Hepatocyte growth factor receptor; signaling prote | 100.0 | |
| 3oky_A | 681 | Plexin-A2; transmembrane, ligand, SEMA-domain, cel | 100.0 | |
| 3al9_A | 539 | Plexin-A2; beta-propeller, membrane protein, signa | 100.0 | |
| 3ol2_B | 528 | Plexin-B1; beta-propeller, signalling, extacellula | 100.0 | |
| 4fww_A | 527 | Macrophage-stimulating protein receptor; beta-prop | 100.0 | |
| 3oky_B | 565 | Putative uncharacterized protein; transmembrane, l | 100.0 | |
| 1olz_A | 663 | Semaphorin 4D; developmental protein, CD100, beta- | 100.0 | |
| 3nvn_B | 476 | Plexin-C1; beta-propeller, signaling, viral protei | 100.0 | |
| 1q47_A | 495 | Semaphorin 3A; beta propeller, signaling protein; | 100.0 | |
| 4gz8_A | 667 | Semaphorin-3A; multi-domain, cell-CELL signaling, | 100.0 | |
| 3nvq_A | 590 | Semaphorin-7A; beta-propeller, signaling, signalin | 100.0 | |
| 2r2o_A | 138 | Plexin-B1; effector domain, structural genomics, s | 100.0 | |
| 3nvx_A | 383 | Protein A39; beta-propeller, viral protein; HET: N | 100.0 | |
| 4e74_A | 117 | Plexin-A4; RBD, structural genomics, structural ge | 99.97 | |
| 3h6n_A | 127 | Plexin-D1; structural genomics consortium, SGC, me | 99.97 | |
| 4e71_A | 111 | Plexin-B2, MM1; transmembrane, signaling, RBD, str | 99.97 | |
| 3kuz_A | 126 | Plexin-C1; structural genomics, structural genomic | 99.9 | |
| 2uzx_B | 727 | Hepatocyte growth factor receptor; signaling prote | 99.72 | |
| 1uad_C | 99 | RSEC5, exocyst complex component SEC5; small GTP-b | 99.55 | |
| 2cxk_A | 95 | Camta1, calmodulin binding transcription activator | 99.51 | |
| 2cxk_A | 95 | Camta1, calmodulin binding transcription activator | 99.3 | |
| 1uad_C | 99 | RSEC5, exocyst complex component SEC5; small GTP-b | 99.24 | |
| 3orj_A | 439 | Sugar-binding protein; structural genomics, joint | 98.49 | |
| 3muj_A | 138 | Transcription factor COE3; immunoglobulin like fol | 98.42 | |
| 3muj_A | 138 | Transcription factor COE3; immunoglobulin like fol | 98.35 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.32 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.31 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.15 | |
| 3mlp_A | 402 | Transcription factor COE1; transcription factor, p | 98.13 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.07 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.06 | |
| 3mlp_A | 402 | Transcription factor COE1; transcription factor, p | 98.02 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.01 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.0 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.97 | |
| 3oky_A | 681 | Plexin-A2; transmembrane, ligand, SEMA-domain, cel | 97.92 | |
| 3orj_A | 439 | Sugar-binding protein; structural genomics, joint | 97.73 | |
| 3ol2_B | 528 | Plexin-B1; beta-propeller, signalling, extacellula | 97.51 | |
| 3al9_A | 539 | Plexin-A2; beta-propeller, membrane protein, signa | 97.42 | |
| 3nvn_B | 476 | Plexin-C1; beta-propeller, signaling, viral protei | 97.24 | |
| 1olz_A | 663 | Semaphorin 4D; developmental protein, CD100, beta- | 96.84 | |
| 3hm6_X | 644 | Plexin-B1; structural genomics consortium, SGC, me | 96.63 | |
| 1wer_A | 334 | P120GAP; GTPase activation, RAS, signal transducti | 96.13 | |
| 4fww_A | 527 | Macrophage-stimulating protein receptor; beta-prop | 95.49 | |
| 3oky_B | 565 | Putative uncharacterized protein; transmembrane, l | 93.71 | |
| 4gz8_A | 667 | Semaphorin-3A; multi-domain, cell-CELL signaling, | 91.68 | |
| 2yrp_A | 114 | Nuclear factor of activated T-cells, cytoplasmic 4 | 91.6 | |
| 3nvq_A | 590 | Semaphorin-7A; beta-propeller, signaling, signalin | 90.6 | |
| 1u36_A | 106 | DNA-binding, nuclear factor NF-kappa-B P105 subuni | 90.33 | |
| 2yrp_A | 114 | Nuclear factor of activated T-cells, cytoplasmic 4 | 89.62 | |
| 1ikn_C | 119 | P50D, protein (NF-kappa-B P50D subunit); transcrip | 88.87 | |
| 1ikn_C | 119 | P50D, protein (NF-kappa-B P50D subunit); transcrip | 88.71 | |
| 3ig3_A | 627 | Plxna3 protein; plexin intracellular GAP RBD inact | 87.98 | |
| 3iag_C | 422 | Recombining binding protein suppressor of hairless | 87.53 | |
| 1my7_A | 114 | NF-kappab P65 (RELA) subunit; immunoglobulin, IG, | 86.23 | |
| 1u36_A | 106 | DNA-binding, nuclear factor NF-kappa-B P105 subuni | 85.53 | |
| 3iag_C | 422 | Recombining binding protein suppressor of hairless | 85.42 | |
| 1my7_A | 114 | NF-kappab P65 (RELA) subunit; immunoglobulin, IG, | 85.23 | |
| 3brd_A | 477 | LIN-12 and GLP-1 phenotype protein 1, isoform A; p | 81.67 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 81.59 | |
| 2o61_A | 540 | Transcription factor P65/interferon regulatory FA | 80.64 | |
| 2o61_A | 540 | Transcription factor P65/interferon regulatory FA | 80.36 |
| >3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-220 Score=2016.81 Aligned_cols=583 Identities=62% Similarity=0.987 Sum_probs=526.7
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccChHhHhhhccCCCCCCCcccccCCchhh
Q psy15505 1632 STENTRVLKNMQEQMDILELRVAAECKEAFAELQTEITDLTGDLTSGGIPFLDYRTYAMMILFPNSEHHAVLQFERPELL 1711 (2400)
Q Consensus 1632 s~~~~r~~k~~~~qme~lE~~V~~eck~~FaeLqt~m~dl~~dl~~~giPfldy~~y~~~~~Fp~~~~~p~~~~~~~~~~ 1711 (2400)
|+||+|+|||+|+|||+||++||+|||||||||||||+||++||+++||||||||+|++|+||||.++||+++++++ +.
T Consensus 2 s~~a~r~~kk~~~Qme~LE~~Vr~ecK~aFaELqt~m~dlt~dl~~~giPfLdyk~y~~rv~FP~~~~hp~l~~~~~-~~ 80 (627)
T 3ig3_A 2 TQDADRTLKRLQLQMDNLESRVALECKEAFAELQTDINELTNHMDGVQIPFLDYRTYAVRVLFPGIEAHPVLKELDT-PP 80 (627)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC---CCCCBCCHHHHHHHHHSTTCTTCGGGSCCCC-CH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhhhhccccCCCCCcChHHHHHhhcCCCCCCCcccccccc-CC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999988 88
Q ss_pred hHHHHHHHHHhhccCchhHhHHHHhhccCCCCCcccchhhHHHHHHHHHH-------HHHHHHHHHHHHHhcCCCCCccc
Q psy15505 1712 HKEKGLRLFGQLIQNKTFLLLFIRTLESNRYFSMRDRVNVASLIMVTLQN-------ILKTLLAELIEKCMEGKSHPKLL 1784 (2400)
Q Consensus 1712 ~~~~~l~~f~~ll~~k~Fl~~fi~tlE~q~~fs~rdr~~~aSLl~v~l~~-------il~~Ll~~li~~~~~~~~~pkl~ 1784 (2400)
++|+||.||++||+||.||++||||||+||+|++||||+||||||+|||| ||++||.|||+|++++|+|||||
T Consensus 81 ~~e~~l~~f~~LL~nk~FLl~fI~tLE~q~~Fs~rDr~~vASLL~vaL~~kleY~T~Il~~LL~dli~~~v~~k~~PkLm 160 (627)
T 3ig3_A 81 NVEKALRLFGQLLHSRAFLLTFIHTLEAQSSFSMRDRGTVASLTMVALQSRLDYATGLLKQLLADLIEKNLESKNHPKLL 160 (627)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHTTCCSTTT
T ss_pred CHHHHHHHHHHHhcccHHHHHHHHHHhcCCCcchhcchhhHHHHHHHhccchHHHHHHHHHHHHHHHHHHhcccCCcchh
Confidence 99999999999999999999999999999999999999999999999999 99999999999999887899999
Q ss_pred cccchHHHHHHHHHHHHHHHhHHhhhhcCchhHHHHHHHHccccccCcceeecccccccchhhhhcccceeeeEEee---
Q psy15505 1785 LRRTESVAEKMLSSWFTFLLYKFLRECAGEPLYLLFRAMKQQVDKGPVDAITAEARYSLSEEKLIRHAIDFKPMTVY--- 1861 (2400)
Q Consensus 1785 lRrtEsvvEkmltnW~s~~ly~~l~~~ag~pl~~L~~aik~QvekGPvDaitg~ArytL~e~~Llr~~i~~~~l~l~--- 1861 (2400)
|||||||||||||||||||||+||||+||||||||||||||||||||||||||||||||||+|||||+|||++|||+
T Consensus 161 lRRtESVvEKmLtnW~sicLY~~Lke~aGepLf~L~~AiK~Qv~KGPVDaiTg~ArYtLnE~~LLre~ie~~~ltL~v~~ 240 (627)
T 3ig3_A 161 LRRTESVAEKMLTNWFTFLLHKFLKECAGEPLFLLYCAIKQQMEKGPIDAITGEARYSLSEDKLIRQQIDYKTLTLHCVC 240 (627)
T ss_dssp TTSCCCHHHHHHHHHHHHHTHHHHHHTTHHHHHHHHHHHHHHHTTSCBCTTTCCBTTCSSGGGBCCSCCCCCEEEEEEEC
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhcccCChhhhhhhhhccccHhhhhhhhccceeEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ---------------------echhhHHhhhccCCCCCCCCCCCcceEEeeCCCCcEEEecCCCCceeeCceEEEeeccC
Q psy15505 1862 ---------------------VKEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNH 1920 (2400)
Q Consensus 1862 ---------------------vKeKild~~yk~~p~s~rp~~~~~dlew~~~~~~~~~L~d~D~ts~~~~~w~rlNTl~h 1920 (2400)
||||||||||||+|||+||+++++|||||+|++|+++|+|+|.||+++|+|||||||+|
T Consensus 241 ~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~H 320 (627)
T 3ig3_A 241 PESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAH 320 (627)
T ss_dssp TTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTT
T ss_pred cCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhh
Confidence 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEeee---ccccccccCC---Ccccc-----cccccccCCCCCCccCCCCCceeEEeecCCCCCccccCc
Q psy15505 1921 YRVPDGGCLNLVSKQ---YNLSILSEKT---DKYET-----LNLSKMGRNTSPLNRDHDGMAKEWHLVKHHDSDNQKEGE 1989 (2400)
Q Consensus 1921 Y~v~d~a~~~l~~~~---~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~HLvk~~~~~~~~~~~ 1989 (2400)
|+|||||+|+|+||+ |+.+..+..+ .+|++ .+....++++||++++.|+|.|+||||||+|+++.++++
T Consensus 321 Y~V~Dga~v~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~k~~HLVkp~d~~~~~~~~ 400 (627)
T 3ig3_A 321 YQVTDGSLVALVPKQVSAYNMANSFTFTRSLSRYESLLRAASSPDSLRSRAPMLTPDQEAGTKLWHLVRNHDHTDHREGD 400 (627)
T ss_dssp TTCCTTCEEEEEEC----------------------------------------------CCEEESSCCCC---------
T ss_pred cCCCCCceEEEEeccccccccccccccccccccccccccccCCCccccccCcccCccccCCcceEEEecCcccccccccc
Confidence 999999999999999 3332211111 12221 111223567899999999999999999999999988889
Q ss_pred CCcccchhHHhhhhhccccchhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcCCCCchhhcccccCCCccee
Q psy15505 1990 RSNKMVSEIYLTRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRF 2069 (2400)
Q Consensus 1990 ~~~k~i~EiyltrLls~Kgtlq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~i~d~~~~h~WKtN~lpLRF 2069 (2400)
|++||||||||||||+|||||||||||||++||+++||++++|+|||||||||||||+||||+||||+|+||||||||||
T Consensus 401 r~~K~i~EIyLTRLLstKgTlQkfVDdlF~sIls~~~~~~~~P~aIKY~FDfLDeqA~kh~I~Dpev~H~WKtNsLpLRF 480 (627)
T 3ig3_A 401 RGSKMVSEIYLTRLLATKGTLQKFVDDLFETVFSTAHRGSALPLAIKYMFDFLDEQADQRQISDPDVRHTWKSNCLPLRF 480 (627)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSGGGCCCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHTTTTH
T ss_pred cccccccHHHHHHHHHhchhHHHHHHHHHHHHhccccCCCCCCccHHHHHHhhhhHHHhcCCCCchhhhhhhhCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccCCCeeeeeccCCCCCcceeeehhhhccccccCCcccCCCCCCccccccccchhHHHHHHHHHHHhhcCCCCCHH
Q psy15505 2070 WVNLIKNPNFVFDIHKSNIVDSCLSVVAQTFMDSCSTSDHRLGKDSPSSKLLYAKDIPAYKEWVERYYSDIKSMQAISDQ 2149 (2400)
Q Consensus 2070 Wvn~ikNp~fvfDi~~s~~vd~~lsviaqtfmdacs~se~~lgkdspsnklLyakdip~yk~~v~~yy~~I~~~p~~s~q 2149 (2400)
||||||||||||||+|+++|||||||||||||||||++||||||||||||||||||||+||+||++||++|++||++|||
T Consensus 481 WVNiiKNP~FvFDi~ks~~vDacLSVIAQtfmDsCS~sehkLgkdSPsNKLLyAKdIp~Yk~~V~~yY~~I~~~p~iSdq 560 (627)
T 3ig3_A 481 WVNVIKNPQFVFDIHKNSITDACLSVVAQTFMDSCSTSEHRLGKDSPSNKLLYAKDIPNYKSWVERYYRDIAKMASISDQ 560 (627)
T ss_dssp HHHHHHCGGGTBSCCCCHHHHHHHHHHHHHHHHHTCCSCCCCCTTSCHHHHHTTTTHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHhhcCcceeeeccCCcccchhHHHHHHHHHhhhcccccccCCCCCccchhccccHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHHhhHHHHHHHhhcChhhHhhhHHHHHHHHHHhccCc
Q psy15505 2150 DMNAMLAEESRLHNSEFSTNCALYELYTYASKYNEQLTVTLEEDEFSQKQRLAYKLEQKSNAGMGK 2215 (2400)
Q Consensus 2150 em~~~l~~~s~~~~~~f~~~~al~ely~y~~~y~~~i~~~L~~d~~~~~~~l~~~l~~v~~~~~~~ 2215 (2400)
|||++|||+|+.|+++||+++||+|||+||.||++||+++||+|+.|||+||++|||||+++||++
T Consensus 561 emn~~Lae~S~~h~~efn~~~AL~ELY~Y~~kY~~qi~~~Le~d~~~~k~~L~~kl~qv~~~~e~~ 626 (627)
T 3ig3_A 561 DMDAYLVEQSRLHANDFNVLSALSELYFYVTKYRQEILTSLDRDASCRKHKLRQKLEQIITLVSSS 626 (627)
T ss_dssp HHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHTHHHHHHHHHHSHHHHHTTHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhcChHhhhhhhHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999976
|
| >3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X* | Back alignment and structure |
|---|
| >2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A | Back alignment and structure |
|---|
| >3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A | Back alignment and structure |
|---|
| >3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B* | Back alignment and structure |
|---|
| >3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens} | Back alignment and structure |
|---|
| >4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A* | Back alignment and structure |
|---|
| >1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* | Back alignment and structure |
|---|
| >3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB: 3nvq_B* | Back alignment and structure |
|---|
| >1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1 | Back alignment and structure |
|---|
| >4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus} | Back alignment and structure |
|---|
| >3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A | Back alignment and structure |
|---|
| >3nvx_A Protein A39; beta-propeller, viral protein; HET: NAG; 2.00A {Vaccinia virus} PDB: 3nvn_A* | Back alignment and structure |
|---|
| >4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A* | Back alignment and structure |
|---|
| >3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens} | Back alignment and structure |
|---|
| >3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A | Back alignment and structure |
|---|
| >1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A | Back alignment and structure |
|---|
| >2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1 | Back alignment and structure |
|---|
| >2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1 | Back alignment and structure |
|---|
| >1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A | Back alignment and structure |
|---|
| >3orj_A Sugar-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.16A {Bacteroides ovatus} | Back alignment and structure |
|---|
| >3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A | Back alignment and structure |
|---|
| >3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A | Back alignment and structure |
|---|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
| >3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A | Back alignment and structure |
|---|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
| >3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A | Back alignment and structure |
|---|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A | Back alignment and structure |
|---|
| >3orj_A Sugar-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.16A {Bacteroides ovatus} | Back alignment and structure |
|---|
| >3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens} | Back alignment and structure |
|---|
| >3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B* | Back alignment and structure |
|---|
| >3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB: 3nvq_B* | Back alignment and structure |
|---|
| >1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* | Back alignment and structure |
|---|
| >3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X* | Back alignment and structure |
|---|
| >1wer_A P120GAP; GTPase activation, RAS, signal transduction, growth regulation, cancer; 1.60A {Homo sapiens} SCOP: a.116.1.2 PDB: 1wq1_G* | Back alignment and structure |
|---|
| >4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A* | Back alignment and structure |
|---|
| >4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus} | Back alignment and structure |
|---|
| >2yrp_A Nuclear factor of activated T-cells, cytoplasmic 4; beta-sandwich, immunoglobulin-like fold, TIG domain, IPT domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >1u36_A DNA-binding, nuclear factor NF-kappa-B P105 subunit; transcription factor, NF-KB, dimerization domain, intertwined folding; 1.89A {Mus musculus} SCOP: b.1.18.1 PDB: 1u3z_A 1u3y_A 3jv4_B 1bfs_A 1u3j_A 1u42_A 1u41_A 1nfi_B | Back alignment and structure |
|---|
| >2yrp_A Nuclear factor of activated T-cells, cytoplasmic 4; beta-sandwich, immunoglobulin-like fold, TIG domain, IPT domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1ikn_C P50D, protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1 | Back alignment and structure |
|---|
| >1ikn_C P50D, protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1 | Back alignment and structure |
|---|
| >3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A* | Back alignment and structure |
|---|
| >3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C* | Back alignment and structure |
|---|
| >1my7_A NF-kappab P65 (RELA) subunit; immunoglobulin, IG, beta-sandwich, beta-sheet, homodimerdna- binding, transcription regulation, activator; 1.49A {Mus musculus} SCOP: b.1.18.1 PDB: 1my5_A 1bft_A | Back alignment and structure |
|---|
| >1u36_A DNA-binding, nuclear factor NF-kappa-B P105 subunit; transcription factor, NF-KB, dimerization domain, intertwined folding; 1.89A {Mus musculus} SCOP: b.1.18.1 PDB: 1u3z_A 1u3y_A 3jv4_B 1bfs_A 1u3j_A 1u42_A 1u41_A 1nfi_B | Back alignment and structure |
|---|
| >3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C* | Back alignment and structure |
|---|
| >1my7_A NF-kappab P65 (RELA) subunit; immunoglobulin, IG, beta-sandwich, beta-sheet, homodimerdna- binding, transcription regulation, activator; 1.49A {Mus musculus} SCOP: b.1.18.1 PDB: 1my5_A 1bft_A | Back alignment and structure |
|---|
| >3brd_A LIN-12 and GLP-1 phenotype protein 1, isoform A; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans} SCOP: b.1.18.1 b.2.5.8 b.42.7.1 PDB: 2fo1_A 1ttu_A* 3brf_A* | Back alignment and structure |
|---|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2o61_A Transcription factor P65/interferon regulatory FA 7/interferon regulatory factor...; protein-DNA complex, transcription-DNA complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2o61_A Transcription factor P65/interferon regulatory FA 7/interferon regulatory factor...; protein-DNA complex, transcription-DNA complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2400 | ||||
| d1shyb1 | 476 | b.69.12.1 (B:40-515) Hepatocyte growth factor rece | 3e-74 | |
| d1q47a_ | 495 | b.69.12.1 (A:) Semaphorin 3a {Mouse (Mus musculus) | 2e-48 | |
| d1olza2 | 478 | b.69.12.1 (A:3-480) Semaphorin 4d {Human (Homo sap | 5e-47 | |
| d1uadc_ | 92 | b.1.18.18 (C:) Exocyst complex component Sec5, Ral | 3e-12 | |
| d1uadc_ | 92 | b.1.18.18 (C:) Exocyst complex component Sec5, Ral | 7e-04 | |
| d1olza3 | 56 | g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sa | 2e-11 | |
| d1olza3 | 56 | g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sa | 3e-05 | |
| d1cxla1 | 87 | b.1.18.2 (A:497-583) Cyclomaltodextrin glycanotran | 5e-07 | |
| d1cxla1 | 87 | b.1.18.2 (A:497-583) Cyclomaltodextrin glycanotran | 2e-04 | |
| d1shyb2 | 49 | g.16.2.1 (B:516-564) Hepatocyte growth factor rece | 6e-07 | |
| d1shyb2 | 49 | g.16.2.1 (B:516-564) Hepatocyte growth factor rece | 2e-06 | |
| d1p7hl1 | 103 | b.1.18.1 (L:576-678) T-cell transcription factor N | 2e-06 | |
| d1qhoa1 | 81 | b.1.18.2 (A:496-576) Five domain "maltogenic" alph | 2e-06 | |
| d1qhoa1 | 81 | b.1.18.2 (A:496-576) Five domain "maltogenic" alph | 1e-05 | |
| d3bmva1 | 83 | b.1.18.2 (A:496-578) Cyclomaltodextrin glycanotran | 4e-06 | |
| d3bmva1 | 83 | b.1.18.2 (A:496-578) Cyclomaltodextrin glycanotran | 4e-04 | |
| d1cyga1 | 83 | b.1.18.2 (A:492-574) Cyclomaltodextrin glycanotran | 2e-05 | |
| d1cyga1 | 83 | b.1.18.2 (A:492-574) Cyclomaltodextrin glycanotran | 6e-04 | |
| d2cxka1 | 82 | b.1.18.1 (A:872-953) Calmodulin binding transcript | 0.004 |
| >d1shyb1 b.69.12.1 (B:40-515) Hepatocyte growth factor receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 476 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Sema domain family: Sema domain domain: Hepatocyte growth factor receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 254 bits (649), Expect = 3e-74
Identities = 92/399 (23%), Positives = 165/399 (41%), Gaps = 41/399 (10%)
Query: 385 LILCVS---GTCTVRSLQN-----ISDIVQNVREAVVANNGNASTFAFIAPGPPKPPSTH 436
LI C S GTC + I V + + A G S
Sbjct: 91 LISCGSVNRGTCQRHVFPHNHTADIQSEVHCIFSPQIEEPSQCPDCVVSALGAKVLSSVK 150
Query: 437 ----VMYVGVTFTGNSPYRSEVPSIASRSLDPERMFQIADSAVTTGTRMFVNNLARERYI 492
+VG T + + SI+ R L + + +T + + V R+ Y
Sbjct: 151 DRFINFFVGNTINSSYFPDHPLHSISVRRL---KETKDGFMFLTDQSYIDVLPEFRDSYP 207
Query: 493 INYVYGFSSEGFSYFLTTQLKSNIGTSFYISKLVRICHDDSNYYSYTEIPITC------- 545
I YV+ F S F YFLT Q ++ + ++++R C +S +SY E+P+ C
Sbjct: 208 IKYVHAFESNNFIYFLTVQRETL-DAQTFHTRIIRFCSINSGLHSYMEMPLECILTELVP 266
Query: 546 -NSNSGKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRPKNSSA 604
S + +N++QA +V KPG+ LA +G + DD+LF VFA+S+ S P + SA
Sbjct: 267 RGSTKKEVFNILQAAYVSKPGAQLARQIGASLNDDILFGVFAQSK----PDSAEPMDRSA 322
Query: 605 LCIYPLASIRRKFMQNIKTCFSGQGNRGLD-FISPAHPCVQTKLQTIGEDFCGLD-VNTP 662
+C +P+ + F + + R L F P H + C
Sbjct: 323 MCAFPIKYVNDFFNKIVNKN----NVRCLQHFYGPNHEHCFNRTLLRNSSGCEARRDEYR 378
Query: 663 LGGENPIEAVAVLNF---SVRCTAVAATSTGDYTVVFIGTDTGHLKKVVVETSSIAIEYG 719
++ V + V T+++ GD T+ +GT G +VVV S + +
Sbjct: 379 TEFTTALQRVDLFMGQFSEVLLTSISTFIKGDLTIANLGTSEGRFMQVVVSRSGPSTPHV 438
Query: 720 DVKVDENMTVNADLHLD---SKAMHLYVMTERRVSKVKV 755
+ +D + V+ ++ ++ ++ + V+T ++++K+ +
Sbjct: 439 NFLLDSHP-VSPEVIVEHTLNQNGYTLVITGKKITKIPL 476
|
| >d1q47a_ b.69.12.1 (A:) Semaphorin 3a {Mouse (Mus musculus) [TaxId: 10090]} Length = 495 | Back information, alignment and structure |
|---|
| >d1olza2 b.69.12.1 (A:3-480) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]} Length = 478 | Back information, alignment and structure |
|---|
| >d1uadc_ b.1.18.18 (C:) Exocyst complex component Sec5, Ral-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 92 | Back information, alignment and structure |
|---|
| >d1uadc_ b.1.18.18 (C:) Exocyst complex component Sec5, Ral-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 92 | Back information, alignment and structure |
|---|
| >d1olza3 g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]} Length = 56 | Back information, alignment and structure |
|---|
| >d1olza3 g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]} Length = 56 | Back information, alignment and structure |
|---|
| >d1cxla1 b.1.18.2 (A:497-583) Cyclomaltodextrin glycanotransferase, domain D {Bacillus circulans, different strains [TaxId: 1397]} Length = 87 | Back information, alignment and structure |
|---|
| >d1cxla1 b.1.18.2 (A:497-583) Cyclomaltodextrin glycanotransferase, domain D {Bacillus circulans, different strains [TaxId: 1397]} Length = 87 | Back information, alignment and structure |
|---|
| >d1shyb2 g.16.2.1 (B:516-564) Hepatocyte growth factor receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 49 | Back information, alignment and structure |
|---|
| >d1shyb2 g.16.2.1 (B:516-564) Hepatocyte growth factor receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 49 | Back information, alignment and structure |
|---|
| >d1p7hl1 b.1.18.1 (L:576-678) T-cell transcription factor NFAT1 (NFATC2) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
| >d1qhoa1 b.1.18.2 (A:496-576) Five domain "maltogenic" alpha-amylase (glucan 1,4-alpha-maltohydrolase), domain D {Bacillus stearothermophilus [TaxId: 1422]} Length = 81 | Back information, alignment and structure |
|---|
| >d1qhoa1 b.1.18.2 (A:496-576) Five domain "maltogenic" alpha-amylase (glucan 1,4-alpha-maltohydrolase), domain D {Bacillus stearothermophilus [TaxId: 1422]} Length = 81 | Back information, alignment and structure |
|---|
| >d3bmva1 b.1.18.2 (A:496-578) Cyclomaltodextrin glycanotransferase, domain D {Thermoanaerobacterium [TaxId: 28895]} Length = 83 | Back information, alignment and structure |
|---|
| >d3bmva1 b.1.18.2 (A:496-578) Cyclomaltodextrin glycanotransferase, domain D {Thermoanaerobacterium [TaxId: 28895]} Length = 83 | Back information, alignment and structure |
|---|
| >d1cyga1 b.1.18.2 (A:492-574) Cyclomaltodextrin glycanotransferase, domain D {Bacillus stearothermophilus [TaxId: 1422]} Length = 83 | Back information, alignment and structure |
|---|
| >d1cyga1 b.1.18.2 (A:492-574) Cyclomaltodextrin glycanotransferase, domain D {Bacillus stearothermophilus [TaxId: 1422]} Length = 83 | Back information, alignment and structure |
|---|
| >d2cxka1 b.1.18.1 (A:872-953) Calmodulin binding transcription activator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2400 | |||
| d1shyb1 | 476 | Hepatocyte growth factor receptor {Human (Homo sap | 100.0 | |
| d1olza2 | 478 | Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1q47a_ | 495 | Semaphorin 3a {Mouse (Mus musculus) [TaxId: 10090] | 100.0 | |
| d1uadc_ | 92 | Exocyst complex component Sec5, Ral-binding domain | 99.24 | |
| d2cxka1 | 82 | Calmodulin binding transcription activator 1 {Huma | 99.16 | |
| d2cxka1 | 82 | Calmodulin binding transcription activator 1 {Huma | 99.1 | |
| d1uadc_ | 92 | Exocyst complex component Sec5, Ral-binding domain | 99.02 | |
| d1qhoa1 | 81 | Five domain "maltogenic" alpha-amylase (glucan 1,4 | 98.93 | |
| d1cyga1 | 83 | Cyclomaltodextrin glycanotransferase, domain D {Ba | 98.89 | |
| d1qhoa1 | 81 | Five domain "maltogenic" alpha-amylase (glucan 1,4 | 98.87 | |
| d1cxla1 | 87 | Cyclomaltodextrin glycanotransferase, domain D {Ba | 98.82 | |
| d3bmva1 | 83 | Cyclomaltodextrin glycanotransferase, domain D {Th | 98.75 | |
| d1cyga1 | 83 | Cyclomaltodextrin glycanotransferase, domain D {Ba | 98.73 | |
| d1cxla1 | 87 | Cyclomaltodextrin glycanotransferase, domain D {Ba | 98.68 | |
| d3bmva1 | 83 | Cyclomaltodextrin glycanotransferase, domain D {Th | 98.66 | |
| d1p7hl1 | 103 | T-cell transcription factor NFAT1 (NFATC2) {Human | 98.19 | |
| d1p7hl1 | 103 | T-cell transcription factor NFAT1 (NFATC2) {Human | 98.14 | |
| d1shyb2 | 49 | Hepatocyte growth factor receptor {Human (Homo sap | 97.32 | |
| d3brda1 | 119 | DNA-binding protein LAG-1 (CSL) {Caenorhabditis el | 96.72 | |
| d3brda1 | 119 | DNA-binding protein LAG-1 (CSL) {Caenorhabditis el | 96.71 | |
| d1olza3 | 56 | Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]} | 96.62 | |
| d1wera_ | 324 | p120GAP domain {Human (Homo sapiens) [TaxId: 9606] | 96.55 | |
| d1imhc1 | 101 | T-cell transcription factor NFAT5 (TONEBP) {Human | 94.6 | |
| d1shyb2 | 49 | Hepatocyte growth factor receptor {Human (Homo sap | 94.59 | |
| d1imhc1 | 101 | T-cell transcription factor NFAT5 (TONEBP) {Human | 94.58 | |
| d1olza3 | 56 | Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]} | 93.49 | |
| d1u36a_ | 104 | p50 subunit of NF-kappa B transcription factor {Hu | 92.58 | |
| d1my7a_ | 107 | p65 subunit of NF-kappa B (NFKB), dimerization dom | 92.37 | |
| d1gjia1 | 100 | p65 subunit of NF-kappa B (NFKB), dimerization dom | 91.93 | |
| d1gjia1 | 100 | p65 subunit of NF-kappa B (NFKB), dimerization dom | 91.36 | |
| d1u36a_ | 104 | p50 subunit of NF-kappa B transcription factor {Hu | 91.2 | |
| d1nf1a_ | 324 | GAP related domain of neurofibromin {Human (Homo s | 90.95 | |
| d1my7a_ | 107 | p65 subunit of NF-kappa B (NFKB), dimerization dom | 90.89 | |
| d1a3qa1 | 101 | p52 subunit of NF-kappa B (NFKB) {Human (Homo sapi | 90.38 | |
| d1a3qa1 | 101 | p52 subunit of NF-kappa B (NFKB) {Human (Homo sapi | 86.34 |
| >d1shyb1 b.69.12.1 (B:40-515) Hepatocyte growth factor receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Sema domain family: Sema domain domain: Hepatocyte growth factor receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-51 Score=524.64 Aligned_cols=360 Identities=23% Similarity=0.361 Sum_probs=270.3
Q ss_pred ccCCEEEEecc---ceeEeeecccccc-cc---------cCeeeEEEecCCCCceEEEEcCCCCCCCCceeEEEEEEeeC
Q psy15505 380 HTNPILILCVS---GTCTVRSLQNISD-IV---------QNVREAVVANNGNASTFAFIAPGPPKPPSTHVMYVGVTFTG 446 (2400)
Q Consensus 380 ~~~~~LivCGS---GiC~lr~Lsni~~-~~---------~g~~~~vasnd~~~StVGvI~~g~~~~~~~~~LyVGtt~~~ 446 (2400)
.++++||+||| |+|++|+|.++.. .. ++...+.+++++..+++|....+. ++.....||||+++++
T Consensus 86 ~~~~~L~~CGTaf~p~C~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~-~~~~~~~Lyvg~~~~~ 164 (476)
T d1shyb1 86 YYDDQLISCGSVNRGTCQRHVFPHNHTADIQSEVHCIFSPQIEEPSQCPDCVVSALGAKVLSS-VKDRFINFFVGNTINS 164 (476)
T ss_dssp SSSSEEEEEESSSSSBEEEEECCSSCSSCSSSSEEECCCCCCSSTTCCTTBCCCTTCEEEEEE-EETTEEEEEEEECCCC
T ss_pred CCCCeEEEecCCCCCCCeEeecCcccccccccccccccccCcCCCCCCCCccccccceeeccc-cCccceeEEEEEcccc
Confidence 35789999999 9999999988632 11 122233344455555556544321 1113568999999987
Q ss_pred CCCCCCCCCeeEEeeCCCC-ccc--eecccceeeeeeeeeccccccccceeeEEeeecCCEEEEEEEeeccCCCCcceee
Q psy15505 447 NSPYRSEVPSIASRSLDPE-RMF--QIADSAVTTGTRMFVNNLARERYIINYVYGFSSEGFSYFLTTQLKSNIGTSFYIS 523 (2400)
Q Consensus 447 ~~~yr~~~paIS~R~L~~~-~~f--~~~~~~v~s~~~i~v~~~~~~~y~~~FV~sF~~g~fVYFlf~e~~~~~~~~~~~S 523 (2400)
....+...+++++|.|... ..| .++...+. ++..+++.|.++||++|++++||||||+|++.+ .++.++|
T Consensus 165 ~~~~~~~~~s~s~R~l~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~fV~~F~~~~~vYF~f~e~~~~-~~~~~~S 237 (476)
T d1shyb1 165 SYFPDHPLHSISVRRLKETKDGFMFLTDQSYID------VLPEFRDSYPIKYVHAFESNNFIYFLTVQRETL-DAQTFHT 237 (476)
T ss_dssp CCCTTCCCCSEEEEEECTTSSCEEECSGGGEEC------CCTTHHHHSCCEEEEEEEETTEEEEEEECCSST-TCSCCCE
T ss_pred cCCCccccCccccccCcccccchhhhcccceee------eccccccccCcceEeeeccCCEEEEEEEecccc-cccccee
Confidence 7444445688999999543 333 33444443 233677789999999999999999999999886 4578999
Q ss_pred eEEEEecCCCCcceeeeEEEEccCCC--------CccccceeEEeecCCCCCcccccccCCCCcEEEEEEeccCCCCCCC
Q psy15505 524 KLVRICHDDSNYYSYTEIPITCNSNS--------GKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEG 595 (2400)
Q Consensus 524 RVaRVCk~D~~wtSY~Ea~L~Cs~p~--------~~~yN~LQaa~v~~pG~~LA~~Lgi~~~~~vLyaVFS~~~~~~~~~ 595 (2400)
|||||||+|++|+||+||||+|+.|+ +++||+|||||+++||.+||++|++++++++|||||+++++ .
T Consensus 238 RvaRVCk~D~~wtSy~ka~L~Cs~p~~~p~~~~~~~~fN~lQ~~~v~~pg~~La~~l~~~~~~~vlygvFsts~~----~ 313 (476)
T d1shyb1 238 RIIRFCSINSGLHSYMEMPLECILTELVPRGSTKKEVFNILQAAYVSKPGAQLARQIGASLNDDILFGVFAQSKP----D 313 (476)
T ss_dssp EEEEEECCTTCCCSCEEEEEEEECC---------CCBCCCCCEEEEECCCHHHHHHHTCCTTCCEEEEEEEEECT----T
T ss_pred EEEEEeccCCCcceEEEEEEEEecCCcccccCCCCcccceeeEEEecCcchhhhhhcCCCCCCCEEEEEEcCCcC----C
Confidence 99999999999999999999998763 47899999999999999999999999999999999999886 4
Q ss_pred CCCCCCCccccccchHHHHHHhhcccceeecCCCCcceeccCCCCCccccccCccCCcccCccc-cccCCccCCccceeE
Q psy15505 596 SNRPKNSSALCIYPLASIRRKFMQNIKTCFSGQGNRGLDFISPAHPCVQTKLQTIGEDFCGLDV-NTPLGGENPIEAVAV 674 (2400)
Q Consensus 596 s~~P~~~SAVCvFsL~dI~~~F~~~~~~Cytg~~~~~lp~~~~~~~C~~~~~~~~~~~~C~~~~-~~PL~~~~pv~~~Pl 674 (2400)
+.+|+.+||||+|+|++|+++|++++++|+... ..|.+. ++++.|.+.... .+...|.... .+|++...|+.+.|+
T Consensus 314 ~~~~~~~SAVC~fsl~dI~~~F~~~~~~~~~~~-~~~~~~-p~~~~c~~~~~~-~~~~~~~~~~~~~~~~~~~pv~~~pl 390 (476)
T d1shyb1 314 SAEPMDRSAMCAFPIKYVNDFFNKIVNKNNVRC-LQHFYG-PNHEHCFNRTLL-RNSSGCEARRDEYRTEFTTALQRVDL 390 (476)
T ss_dssp SSSEEEEEEEEEEEHHHHHHHHHCC----CBCC-CTTTSC-SSSTTTTCC--------------CCCCEEBSSCEEEECS
T ss_pred CCCCCCCcEEEEEEHHHHHHHHhhhhhccccCC-CceeeC-CCCCcCcCCCcC-CCCCCcccccCCCcccccCcccCccc
Confidence 556777899999999999999999999986533 344443 567889776432 2334676554 367777889999998
Q ss_pred EEEe--c-eeeEEEEeeecceEEEEEecCCCcEEEEEEeCCcceEEEEEEEecCCCeeeeeeEEec---cCCEEEEEecc
Q psy15505 675 LNFS--V-RCTAVAATSTGDYTVVFIGTDTGHLKKVVVETSSIAIEYGDVKVDENMTVNADLHLDS---KAMHLYVMTER 748 (2400)
Q Consensus 675 l~~~--~-~lTsVAV~~~~~~TVvFLGTs~G~L~KV~l~~s~~a~~ye~i~v~~gspV~~~L~Ld~---~~~~LYV~T~~ 748 (2400)
+... + ++|+|||++.++|||+||||++|+||||++.++.....+.++.+ .++||.++|.++. .+++|||+|++
T Consensus 391 ~~~~~~~~~~Tsi~v~~~~~~tV~flGT~~G~l~Kv~~~~~~~~~~~~~~~~-~~~pv~~~~~~~~~~~~~~~Lyv~t~~ 469 (476)
T d1shyb1 391 FMGQFSEVLLTSISTFIKGDLTIANLGTSEGRFMQVVVSRSGPSTPHVNFLL-DSHPVSPEVIVEHTLNQNGYTLVITGK 469 (476)
T ss_dssp STTTTTTSCEEEEEEEEETTEEEEEEEETTSEEEEEECCSSSCCCCSCCEEC-CSSCEEEEEEEEEETTTEEEEEEEETT
T ss_pred eeeccCCeeEEEEEEeecCCeEEEEEECCCcEEEEEEEcCCCCceeEEEEEE-CCCccCccccccccccCCCEEEEEECC
Confidence 8754 3 79999999999999999999999999999876655555555544 4679998898875 46799999999
Q ss_pred eEEEEEE
Q psy15505 749 RVSKVKV 755 (2400)
Q Consensus 749 kV~kVPv 755 (2400)
+|.|||+
T Consensus 470 ~V~kvPv 476 (476)
T d1shyb1 470 KITKIPL 476 (476)
T ss_dssp EEEEEES
T ss_pred EEEEeeC
Confidence 9999995
|
| >d1olza2 b.69.12.1 (A:3-480) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1q47a_ b.69.12.1 (A:) Semaphorin 3a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1uadc_ b.1.18.18 (C:) Exocyst complex component Sec5, Ral-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2cxka1 b.1.18.1 (A:872-953) Calmodulin binding transcription activator 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cxka1 b.1.18.1 (A:872-953) Calmodulin binding transcription activator 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1uadc_ b.1.18.18 (C:) Exocyst complex component Sec5, Ral-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1qhoa1 b.1.18.2 (A:496-576) Five domain "maltogenic" alpha-amylase (glucan 1,4-alpha-maltohydrolase), domain D {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1cyga1 b.1.18.2 (A:492-574) Cyclomaltodextrin glycanotransferase, domain D {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1qhoa1 b.1.18.2 (A:496-576) Five domain "maltogenic" alpha-amylase (glucan 1,4-alpha-maltohydrolase), domain D {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1cxla1 b.1.18.2 (A:497-583) Cyclomaltodextrin glycanotransferase, domain D {Bacillus circulans, different strains [TaxId: 1397]} | Back information, alignment and structure |
|---|
| >d3bmva1 b.1.18.2 (A:496-578) Cyclomaltodextrin glycanotransferase, domain D {Thermoanaerobacterium [TaxId: 28895]} | Back information, alignment and structure |
|---|
| >d1cyga1 b.1.18.2 (A:492-574) Cyclomaltodextrin glycanotransferase, domain D {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1cxla1 b.1.18.2 (A:497-583) Cyclomaltodextrin glycanotransferase, domain D {Bacillus circulans, different strains [TaxId: 1397]} | Back information, alignment and structure |
|---|
| >d3bmva1 b.1.18.2 (A:496-578) Cyclomaltodextrin glycanotransferase, domain D {Thermoanaerobacterium [TaxId: 28895]} | Back information, alignment and structure |
|---|
| >d1p7hl1 b.1.18.1 (L:576-678) T-cell transcription factor NFAT1 (NFATC2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1p7hl1 b.1.18.1 (L:576-678) T-cell transcription factor NFAT1 (NFATC2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1shyb2 g.16.2.1 (B:516-564) Hepatocyte growth factor receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3brda1 b.1.18.1 (A:542-660) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d3brda1 b.1.18.1 (A:542-660) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1olza3 g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wera_ a.116.1.2 (A:) p120GAP domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1imhc1 b.1.18.1 (C:368-468) T-cell transcription factor NFAT5 (TONEBP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1shyb2 g.16.2.1 (B:516-564) Hepatocyte growth factor receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1imhc1 b.1.18.1 (C:368-468) T-cell transcription factor NFAT5 (TONEBP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1olza3 g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u36a_ b.1.18.1 (A:) p50 subunit of NF-kappa B transcription factor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1my7a_ b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB), dimerization domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gjia1 b.1.18.1 (A:182-281) p65 subunit of NF-kappa B (NFKB), dimerization domain {Chicken (Gallus gallus), C-rel [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1gjia1 b.1.18.1 (A:182-281) p65 subunit of NF-kappa B (NFKB), dimerization domain {Chicken (Gallus gallus), C-rel [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1u36a_ b.1.18.1 (A:) p50 subunit of NF-kappa B transcription factor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nf1a_ a.116.1.2 (A:) GAP related domain of neurofibromin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1my7a_ b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB), dimerization domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1a3qa1 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NFKB) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1a3qa1 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NFKB) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|