Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value
Query 107
pfam04547 449
pfam04547, Anoctamin, Calcium-activated chloride c
0.004
pfam04547 449
pfam04547, Anoctamin, Calcium-activated chloride c
0.004
>gnl|CDD|218140 pfam04547, Anoctamin, Calcium-activated chloride channel
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Score = 34.9 bits (81), Expect = 0.004
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 12 HVVFGICRMIDILVPDIPEGLEFKIKRERY 41
HVV + +I L+PDIPE + K+KRE+Y
Sbjct: 420 HVVLLLKFLIAWLIPDIPEWVRIKLKREKY 449
The family carries eight putative transmembrane domains, and, although it has no similarity to other known channel proteins, it is clearly a calcium-activated ionic channel. It is expressed in various secretory epithelia, the retina and sensory neurons, and mediates receptor-activated chloride currents in diverse physiological processes. Length = 449
>gnl|CDD|218140 pfam04547, Anoctamin, Calcium-activated chloride channel
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Score = 34.9 bits (81), Expect = 0.004
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 56 HVVFGICRMIDILVPDIPEGLEFKIKRERY 85
HVV + +I L+PDIPE + K+KRE+Y
Sbjct: 420 HVVLLLKFLIAWLIPDIPEWVRIKLKREKY 449
The family carries eight putative transmembrane domains, and, although it has no similarity to other known channel proteins, it is clearly a calcium-activated ionic channel. It is expressed in various secretory epithelia, the retina and sensory neurons, and mediates receptor-activated chloride currents in diverse physiological processes. Length = 449
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
>KOG2514|consensus
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Probab=99.60 E-value=2.5e-15 Score=130.64 Aligned_cols=69 Identities=22% Similarity=0.372 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q psy15516 34 FKIKRERYLAKQALQDSETMMNHVVFGICRMIDILVPDIPEGLEFKIKRERYLAKQALQDSETMMNILE 102 (107)
Q Consensus 34 ~~ikrE~ylt~~Allafvivfehvv~~~~~~~~~~IPD~P~~l~~~ikre~yl~~~~l~~~~~~~~~~~ 102 (107)
-......|...+|+++|+|+|||+|++++.+++|+|||+|+++++||+||+||++++++++|.+++..+
T Consensus 750 Y~~s~~~whvlAarLaFiiVfehlV~~ik~~i~~~IPDvPk~l~dqi~REkyL~~e~~~e~eler~qk~ 818 (861)
T KOG2514|consen 750 YGLSIQYWHVLAARLAFVIVFENLVFEIKELVSWTIPDVPKDLKDQIRREKYLAQELFYETEIEKLQKL 818 (861)
T ss_pred cccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344666899999999999999999999999999999999999999999999999999999998887665
>KOG2514|consensus
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Probab=99.20 E-value=2.9e-11 Score=105.64 Aligned_cols=51 Identities=31% Similarity=0.729 Sum_probs=46.8
Q ss_pred chhHHHH---------HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhhhHh
Q psy15516 2 TLLFWNV---------QKKHVVFGICRMIDILVPDIPEGLEFKIKRERYLAKQALQDSET 52 (107)
Q Consensus 2 ~~~~W~v---------vFEhvv~~~~~~i~~lIPdvP~~v~~~ikrE~ylt~~Allafvi 52 (107)
|++|||| +|||+|+.++.+++|+|||+|.++++||+||+|++++...+.++
T Consensus 753 s~~~whvlAarLaFiiVfehlV~~ik~~i~~~IPDvPk~l~dqi~REkyL~~e~~~e~el 812 (861)
T KOG2514|consen 753 SIQYWHVLAARLAFVIVFENLVFEIKELVSWTIPDVPKDLKDQIRREKYLAQELFYETEI 812 (861)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 7899998 89999999999999999999999999999999998877766553
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel []
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Probab=99.15 E-value=1e-10 Score=95.47 Aligned_cols=81 Identities=21% Similarity=0.254 Sum_probs=69.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHHHcCCCchhHHHHH
Q psy15516 2 TLLFWNVQKKHVVFGICRMIDILVPDIP-EGLEFKIKRERYLAKQALQDSETMMNHVVFGICRMIDILVPDIPEGLEFKI 80 (107)
Q Consensus 2 ~~~~W~vvFEhvv~~~~~~i~~lIPdvP-~~v~~~ikrE~ylt~~Allafvivfehvv~~~~~~~~~~IPD~P~~l~~~i 80 (107)
++|-|.-++|-+..+...+||.++.-.. ..+ +..-.+ .+...+..+.+++||++++++.+++|+|||+|+++++++
T Consensus 371 ~IG~W~~il~~i~~lav~tN~~li~~~s~~~~-~~~~~~--~~~~~~~~~~l~~eh~~~~~~~~i~~~ipd~P~~v~~~~ 447 (452)
T PF04547_consen 371 SIGIWNNILEIISWLAVITNAALIAFTSDGQL-QGYFPD--SSLAQRLLFFLVFEHVVFFLKYLISWLIPDVPKWVRIQI 447 (452)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhcchh-hhhccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6899999999999999999999998775 223 222212 455788999999999999999999999999999999999
Q ss_pred HHHHH
Q psy15516 81 KRERY 85 (107)
Q Consensus 81 kre~y 85 (107)
+||+|
T Consensus 448 ~r~~Y 452 (452)
T PF04547_consen 448 QREEY 452 (452)
T ss_pred HHhcC
Confidence 99998
>KOG2513|consensus
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Probab=98.85 E-value=9.9e-09 Score=87.86 Aligned_cols=88 Identities=16% Similarity=0.249 Sum_probs=78.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHHHcCCCchhHHHHHH
Q psy15516 2 TLLFWNVQKKHVVFGICRMIDILVPDIPEGLEFKIKRERYLAKQALQDSETMMNHVVFGICRMIDILVPDIPEGLEFKIK 81 (107)
Q Consensus 2 ~~~~W~vvFEhvv~~~~~~i~~lIPdvP~~v~~~ikrE~ylt~~Allafvivfehvv~~~~~~~~~~IPD~P~~l~~~ik 81 (107)
|+|-|+-++|-++.+.+.+||.++...|+ + ++.-. +.+.+.....++++||+.+++|++++++|||.|.+++..+-
T Consensus 530 ~IG~Wq~~l~~lSvls~vtncaLi~~~~~-~-~~~~~--~~s~~~~il~~V~~EH~~l~Lkflis~vipe~p~wva~~~~ 605 (647)
T KOG2513|consen 530 NIGAWQNALELLSVLSCVTNCALIGMYPQ-V-NKLWP--LLSPENAILIIVILEHVLLLLKFLISSVIPESPRWVAAGIA 605 (647)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhcccc-c-cccCc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 79999999999999999999999999997 4 43332 23666777889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy15516 82 RERYLAKQALQD 93 (107)
Q Consensus 82 re~yl~~~~l~~ 93 (107)
|-++.+.|+..+
T Consensus 606 k~~~~~~e~~~k 617 (647)
T KOG2513|consen 606 KAEFQAREAFKK 617 (647)
T ss_pred HHHHHHHHhhhH
Confidence 999999999985
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel []
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Probab=98.03 E-value=6.1e-06 Score=67.57 Aligned_cols=34 Identities=38% Similarity=0.691 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Q psy15516 8 VQKKHVVFGICRMIDILVPDIPEGLEFKIKRERY 41 (107)
Q Consensus 8 vvFEhvv~~~~~~i~~lIPdvP~~v~~~ikrE~y 41 (107)
+++||++++++.++.|+|||+|++++++++||+|
T Consensus 419 l~~eh~~~~~~~~i~~~ipd~P~~v~~~~~r~~Y 452 (452)
T PF04547_consen 419 LVFEHVVFFLKYLISWLIPDVPKWVRIQIQREEY 452 (452)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcC
Confidence 4999999999999999999999999999999986
>KOG2513|consensus
Back Show alignment and domain information
Probab=96.65 E-value=0.0038 Score=54.21 Aligned_cols=42 Identities=21% Similarity=0.405 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhh
Q psy15516 8 VQKKHVVFGICRMIDILVPDIPEGLEFKIKRERYLAKQALQD 49 (107)
Q Consensus 8 vvFEhvv~~~~~~i~~lIPdvP~~v~~~ikrE~ylt~~Alla 49 (107)
|++||+.++++++++++|||.|++|...+.|-++.+.++.-.
T Consensus 576 V~~EH~~l~Lkflis~vipe~p~wva~~~~k~~~~~~e~~~k 617 (647)
T KOG2513|consen 576 VILEHVLLLLKFLISSVIPESPRWVAAGIAKAEFQAREAFKK 617 (647)
T ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhH
Confidence 489999999999999999999999999999999998887654
Homologous Structure Domains