Psyllid ID: psy15539

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
Protein Sequence
MTKLVQQIPGYGAVKRLIISPFSSSAPQFDDVKPLVSPVDKMAAETKMGISQQTLVSNQQKAKRITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHcccccccccccccccccccccccccHHccccccccccccccccccccHHHHHHHHHHHHHHHHccccEEccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEHHHHHHcccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHEHHHHHHHHHHHHHHHHEHcHHEHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHHHHHHHHcccEEEEEccHHcc
Coil and Loop (DISEMBL)
mtklvqqipgygavkrliispfsssapqfddvkplvspvDKMAAETKMGISQQTLVSNQQKAKRITQYMAALTATIGGFIMGtilgwtspagdrliageypflvtesdlsfigssmalgavfgspvvgnlvdtvgrknTMLLLAVPTLVGWGLIIWSQSVIMFCAGRlltgfgggsFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLmllmpespqfhlkkNRVKQAKESLQWfrgseydidsEITDMQNSlekersdkvplmqafstpaakRGLLIGLGVMFIQQFGGINAVVFYTVKIFK
Flexible Loop (DISEMBL)
mtklvqqipgygaVKRLIISPFsssapqfddvKPLVSPVDKMAAETkmgisqqtlVSNQQKAKRITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQwfrgseydidsEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK
Low Complexity Region (SEG)
MTKLVQQIPGYGAVKRLIISPFSSSAPQFDDVKPLVSPVDKMAAETKMGISQQTLVSNQQKAKRITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK
Disordered region (IsUnstruct)
*******IPGYGAVKRLIISP*****************************************KRITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLLMPESPQFHL***********LQWFRG*******************************TPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIF*
Disordered Region (DISOPRED)
****V***PGYGAVKRLI*************************************************YMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEIT******************AFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK
Disordered Region (DISEMBL)
MTKLVQQIPGYGAVKRLIISPFSSSAPQFDDVKPLVSPVDKMAAETKMGISQQTLVSNQQKAKRITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK
Disordered Region (DISPRO)
*************************************************************AKRITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTKLVQQIPGYGAVKRLIISPFSSSAPQFDDVKPLVSPVDKMAAETKMGISQQTLVSNQQKAKRITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	333	2.2.26 [Sep-21-2011]
B0WC46	517	Facilitated trehalose tra	N/A	N/A	0.945	0.609	0.342	1e-41
Q17NV8	806	Facilitated trehalose tra	N/A	N/A	0.795	0.328	0.377	3e-41
Q7PIR5	793	Facilitated trehalose tra	no	N/A	0.795	0.334	0.373	7e-41
A5LGM7	504	Facilitated trehalose tra	N/A	N/A	0.795	0.525	0.373	9e-41
B4HNS1	488	Facilitated trehalose tra	N/A	N/A	0.792	0.540	0.379	1e-40
B4QBN3	488	Facilitated trehalose tra	N/A	N/A	0.795	0.543	0.369	5e-40
A9ZSY2	502	Facilitated trehalose tra	N/A	N/A	0.837	0.555	0.360	6e-40
B4HNS0	857	Facilitated trehalose tra	N/A	N/A	0.948	0.368	0.316	7e-40
Q8MKK4	488	Facilitated trehalose tra	no	N/A	0.792	0.540	0.372	9e-40
A9ZSY3	505	Facilitated trehalose tra	N/A	N/A	0.810	0.534	0.359	2e-39

>sp|B0WC46|TRET1_CULQU Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/333 (34%), Positives = 179/333 (53%), Gaps = 18/333 (5%)

Query: 7   QIPGYGAVKRLIISPFSSSAPQFDDVKPLVSPVDKMAAETKMGISQQTLVSNQQKAK-RI 65
           +IP    V R + S F   +     VK L      M A+T +     T+ + +  AK   
Sbjct: 4   EIPECYEVLRNVFSKFRRHSLTAAMVKLL------MRADTHVSF---TVPAEEPVAKCTF 54

Query: 66  TQYMAALTATIGGFIMGTILGWTSPA----GDRLIAGEYPFLVTESDLSFIGSSMALGAV 121
           +Q +AAL+ ++G  ++G    +TSPA     DR I     F VT+   S++G  M L  +
Sbjct: 55  SQVLAALSVSLGSMVVGFSSAYTSPALVSMKDRNITS---FEVTDQSGSWVGGIMPLAGL 111

Query: 122 FGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVV 181
            G  + G L++ +GRKNT+L  A P ++ W LI  +  V M   GR L+GF  G  ++ +
Sbjct: 112 VGGILGGPLIEYLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSL 171

Query: 182 PMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLL 241
           P+Y  E  + E+RGTLG         GIL  +  G++     L+ + A LP+ F+ LM L
Sbjct: 172 PVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGNYMDWSELAFLGATLPVPFLILMFL 231

Query: 242 MPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD-MQNSLEKERSDKVPLMQAFSTP 300
           +PE+P++++ + R  +A+++LQW RG + D+D E+   +++  + ER      M      
Sbjct: 232 IPETPRWYVSRGRDDRARKALQWLRGKKADVDPELKGIIKSHQDAERHASQSAMLDLLKK 291

Query: 301 AAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
              + LLI LG+MF QQ  GINAV+FYTV+IF+
Sbjct: 292 TNLKPLLISLGLMFFQQLSGINAVIFYTVQIFQ 324

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.
Culex quinquefasciatus (taxid: 7176)

>sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1

 Score =  169 bits (427), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/273 (37%), Positives = 157/273 (57%), Gaps = 8/273 (2%)

Query: 66  TQYMAALTATIGGFIMGTILGWTSPA----GDRLIAGEYPFLVTESDLSFIGSSMALGAV 121
           TQ +AAL+ ++G  ++G    +TSPA     DR I     F VT+   S++G  M L  +
Sbjct: 344 TQVLAALSVSLGSMVVGFSSAYTSPALVSMKDRNITS---FEVTDQSGSWVGGIMPLAGL 400

Query: 122 FGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVV 181
            G  + G L++ +GRKNT+L  A P ++ W LI  +  V M   GR L+GF  G  ++ +
Sbjct: 401 AGGILGGPLIEYLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSL 460

Query: 182 PMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLL 241
           P+Y  E  + E+RGTLG         GIL  +  G +    GL+ + A LPI F+ LM L
Sbjct: 461 PVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGKYMDWSGLAFLGAALPIPFLLLMFL 520

Query: 242 MPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD-MQNSLEKERSDKVPLMQAFSTP 300
           +PE+P++++ + R  +A+++LQW RG + D+D E+   +++  + ER      M      
Sbjct: 521 IPETPRWYVSRGRDDRARKALQWLRGKKADVDPELKGIIKSHQDAERHASQSAMLDLMKK 580

Query: 301 AAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
           A  + LLI LG+MF QQ  GINAV+FYTV+IF+
Sbjct: 581 ANLKPLLISLGLMFFQQLSGINAVIFYTVQIFQ 613

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Aedes aegypti (taxid: 7159)

>sp|Q7PIR5|TRET1_ANOGA Facilitated trehalose transporter Tret1 OS=Anopheles gambiae GN=Tret1 PE=1 SV=3

 Score =  168 bits (425), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 102/273 (37%), Positives = 156/273 (57%), Gaps = 8/273 (2%)

Query: 66  TQYMAALTATIGGFIMGTILGWTSPA----GDRLIAGEYPFLVTESDLSFIGSSMALGAV 121
           TQ +AAL+ ++G  ++G    +TSPA     DR I     F VT+   S++G  M L  +
Sbjct: 331 TQVLAALSVSLGSMVVGFSSAYTSPALVSMKDRNITS---FEVTDQSGSWVGGIMPLAGL 387

Query: 122 FGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVV 181
            G  + G +++ +GRKNT+L  A P ++ W LI  +  V M   GR L+G   G  ++ +
Sbjct: 388 AGGILGGPMIEYLGRKNTILATATPFIISWLLIGCATHVAMVLVGRALSGLCVGIASLSL 447

Query: 182 PMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLL 241
           P+Y  E  + E+RGTLG         GIL  +  G +    GL+ + A LPI F+ LM L
Sbjct: 448 PVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGKYLDWSGLAFLGAALPIPFLLLMFL 507

Query: 242 MPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEK-ERSDKVPLMQAFSTP 300
           +PE+P++++ +NR  +A+++LQW RG + D++ E+  +  S +  ER      M      
Sbjct: 508 IPETPRWYVSRNREDRARKALQWLRGRKADVEPELKGISKSHQDAERHASSSAMLDLLNK 567

Query: 301 AAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
           A  + LLI LG+MF QQ  GINAV+FYTV+IF+
Sbjct: 568 ANLKPLLISLGLMFFQQLSGINAVIFYTVQIFQ 600

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Anopheles gambiae (taxid: 7165)

>sp|A5LGM7|TRET1_POLVA Facilitated trehalose transporter Tret1 OS=Polypedilum vanderplanki GN=Tret1 PE=1 SV=1

 Score =  167 bits (424), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 102/273 (37%), Positives = 161/273 (58%), Gaps = 8/273 (2%)

Query: 66  TQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEY----PFLVTESDLSFIGSSMALGAV 121
           TQ +AA+  ++G  ++G    +TSPA   L++ +      F VTE + S++G  M L  +
Sbjct: 42  TQILAAIAVSMGSMVVGFASAYTSPA---LVSMQNTTITSFKVTEQEASWVGGIMPLAGL 98

Query: 122 FGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVV 181
            G    G  ++ +GRKNT+L  AVP +V W LI ++ S+ M  AGR L+GF  G  ++ +
Sbjct: 99  AGGIAGGPFIEYLGRKNTILATAVPFIVAWLLIAFANSIWMVLAGRALSGFCVGIASLSL 158

Query: 182 PMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLL 241
           P+Y  E  + E+RGTLG         GIL  +  G + +  GL+ I ++LPI F+ L LL
Sbjct: 159 PVYLGETVQPEVRGTLGLLPTAFGNIGILICFVAGKYVNWSGLAFIGSILPIPFMVLTLL 218

Query: 242 MPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDM-QNSLEKERSDKVPLMQAFSTP 300
           +PE+P++ + + R ++A+++LQW RG + D++ E+  + ++  E ER      +      
Sbjct: 219 IPETPRWFVTRGREERARKALQWLRGKKADVEPELKGIVKSHCEAERHASQNAIFDLMKR 278

Query: 301 AAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
           +  + LLI LG+MF QQ  GINAV+FYTV IFK
Sbjct: 279 SNLKPLLIALGLMFFQQLSGINAVIFYTVSIFK 311

High-capacity facilitative transporter for trehalose, required to induce anhydrobiosis. Anhydrobiotic larvae can survive almost complete dehydration. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Polypedilum vanderplanki (taxid: 319348)

>sp|B4HNS1|TRE12_DROSE Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila sechellia GN=Tret1-2 PE=3 SV=1

 Score =  167 bits (423), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/274 (37%), Positives = 165/274 (60%), Gaps = 10/274 (3%)

Query: 66  TQYMAALTATIGGFIMGTILGWTSPA----GDRLIAGEYPFLVTESDLSFIGSSMALGAV 121
           +Q +AAL+ ++   ++G +  +TSPA     DR I     F VT+   S++G  M L A+
Sbjct: 27  SQVLAALSVSLCSLVVGFVSAYTSPALVSMTDRTITS---FEVTKDAGSWVGGIMPLAAL 83

Query: 122 FGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVV 181
            G    G L++ +GR+NT+L  AVP +V   LI  + +VIM   GR LTGF  G  ++ +
Sbjct: 84  AGGITGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSL 143

Query: 182 PMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLL 241
           P+Y  E  + E+RGTLG         GIL  Y  GS+ +   L+ + A LP+ F+ LM++
Sbjct: 144 PVYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSILAFLGAALPVPFLILMII 203

Query: 242 MPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD-MQNSLEKE-RSDKVPLMQAFST 299
           +PE+P++ + + + ++A+++L+W RG E D++ E+ D MQ+  E + ++ +   ++ F  
Sbjct: 204 IPETPRWFVNRGQEERARKALKWLRGKEADVEPELKDLMQSQAEADSQATRNTCLELFKR 263

Query: 300 PAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
              K  L I LG+MF QQF GINAV+FYTV+IFK
Sbjct: 264 INLKP-LSISLGLMFFQQFSGINAVIFYTVQIFK 296

Fails to transport trehalose.

Drosophila sechellia (taxid: 7238)

>sp|B4QBN3|TRE12_DROSI Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila simulans GN=Tret1-2 PE=3 SV=1

 Score =  165 bits (417), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 101/273 (36%), Positives = 159/273 (58%), Gaps = 8/273 (2%)

Query: 66  TQYMAALTATIGGFIMGTILGWTSPA----GDRLIAGEYPFLVTESDLSFIGSSMALGAV 121
           +Q +AAL+ ++   ++G +  +TSPA     DR I     F VT+   S++G  M L A+
Sbjct: 27  SQVLAALSVSLCSLVVGFVSAYTSPALVSMTDRTITS---FEVTKDAGSWVGGIMPLAAL 83

Query: 122 FGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVV 181
            G    G L++ +GR+ T+L  AVP +V   LI  + +VIM   GR LTGF  G  ++ +
Sbjct: 84  AGGITGGPLIEYLGRRTTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSL 143

Query: 182 PMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLL 241
           P+Y  E  + E+RGTLG         GIL  Y  GS+ +   L+ + A LP+ F+ LM++
Sbjct: 144 PVYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLILMII 203

Query: 242 MPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD-MQNSLEKERSDKVPLMQAFSTP 300
           +PE+P++ + + + ++A+++L+W RG E D++ E+ D MQ+  E +   +          
Sbjct: 204 IPETPRWFVNRGQEERARKALKWLRGKEADVEPELKDLMQSQAEADSQARRNTCLELFKR 263

Query: 301 AAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
              + L I LG+MF QQF GINAV+FYTV+IFK
Sbjct: 264 INLKPLSISLGLMFFQQFSGINAVIFYTVQIFK 296

Fails to transport trehalose.

Drosophila simulans (taxid: 7240)

>sp|A9ZSY2|TRET1_APILI Facilitated trehalose transporter Tret1 OS=Apis mellifera ligustica GN=Tret1 PE=1 SV=1

 Score =  165 bits (417), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 166/294 (56%), Gaps = 15/294 (5%)

Query: 51  SQQTLVSNQQKAKR-----ITQYMAALTATIGGFIMGTILGWTSPA----GDRLIAGEYP 101
           S   L +  ++ KR       Q +AAL  ++   ++G    +TSPA     D   A    
Sbjct: 21  SDDVLHTQFKEVKRSPMRYTMQLLAALAVSMASLMIGYSSSYTSPALVSMRDNTTA---T 77

Query: 102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVI 161
           F VT     +IGS M L A+ G  + G  ++ +GR+NT+L  A+P L GW  I  + +V 
Sbjct: 78  FEVTMDMAMWIGSIMPLSALIGGIIGGPCIEYIGRRNTILSTALPFLAGWLFIALATNVA 137

Query: 162 MFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASV 221
           M   GR + GF  G  ++ +P+Y  E  + E+RG+LG    +   +GIL  +  G + + 
Sbjct: 138 MILVGRSICGFCVGVASLSLPVYLGESIQPEVRGSLGLLPTVFGNSGILMCFTAGMYLAW 197

Query: 222 YGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQN 281
             L+++ A +PI F+ LM L+PE+P++++ K ++K+A++SLQW RG   DI  E+  +Q 
Sbjct: 198 RNLALLGACIPIIFLILMFLIPETPRWYISKGKIKEARKSLQWLRGKTADISEELDSIQK 257

Query: 282 -SLEKER-SDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
             +E ER + +  L++ F     K  + I LG+MF QQF GINAV+FYTV+IFK
Sbjct: 258 MHIESERIATEGALIELFRKNHIK-PVFISLGLMFFQQFSGINAVIFYTVQIFK 310

Moderate-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Apis mellifera ligustica (taxid: 7469)

>sp|B4HNS0|TRE11_DROSE Facilitated trehalose transporter Tret1-1 OS=Drosophila sechellia GN=Tret1-1 PE=3 SV=1

 Score =  164 bits (416), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 184/370 (49%), Gaps = 54/370 (14%)

Query: 15  KRLIISPFSSSAPQFDDVKPLVSPVDKMAAETKMGISQQTLVS-NQQKAKRI-------- 65
           KRLI  P   + P   D+K L S  D+    ++    QQ  +S + +K++R+        
Sbjct: 298 KRLIHRPKDITKPVIIDLKDLESESDEDFLTSRQHFQQQRSISTDSRKSRRLYEMDEMGN 357

Query: 66  -------------------------------------TQYMAALTATIGGFIMGTILGWT 88
                                                TQ +AAL+ ++G  ++G +  +T
Sbjct: 358 KRGENIRHAVPFVRQITEDGKPKLEVYRPTTNPIYIWTQVLAALSVSLGSLVVGFVSAYT 417

Query: 89  SPA----GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLA 144
           SPA     DR I     F VT+   S++G  M L A+ G    G L++ +GR+NT+L  A
Sbjct: 418 SPALVSMTDRNITS---FEVTQDAGSWVGGIMPLAALAGGITGGPLIEYLGRRNTILATA 474

Query: 145 VPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQ 204
           VP +V   LI  + +V M   GR L GF  G  ++ +P+Y  E  + E+RGTLG      
Sbjct: 475 VPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVYLGETVQPEVRGTLGLLPTAF 534

Query: 205 CTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQW 264
              GIL  +  GS+ +   L+ + A LP+ F+ LM L+PE+P++ + +   ++A+++L+W
Sbjct: 535 GNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILMFLIPETPRWFVGRGLEERARKALKW 594

Query: 265 FRGSEYDIDSEITD-MQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINA 323
            RG E D++ E+   M++  + +R      M         + L I LG+MF QQF GINA
Sbjct: 595 LRGKEADVEPELKGLMRSQADADRQASRNTMLELLKLNNLKPLSISLGLMFFQQFSGINA 654

Query: 324 VVFYTVKIFK 333
           V+FYTV+IFK
Sbjct: 655 VIFYTVQIFK 664

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila sechellia (taxid: 7238)

>sp|Q8MKK4|TRE12_DROME Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila melanogaster GN=Tret1-2 PE=2 SV=1

 Score =  164 bits (415), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 102/274 (37%), Positives = 165/274 (60%), Gaps = 10/274 (3%)

Query: 66  TQYMAALTATIGGFIMGTILGWTSPA----GDRLIAGEYPFLVTESDLSFIGSSMALGAV 121
           +Q +AAL+ ++   ++G +  +TSPA     DR I     F VT+   S++G  M L A+
Sbjct: 27  SQVLAALSVSLCSLVVGFVSAYTSPALVSMTDRTITS---FEVTKDAGSWVGGIMPLAAL 83

Query: 122 FGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVV 181
            G    G L++ +GR++T+L  AVP +V   LI  + +VIM   GR LTGF  G  ++ +
Sbjct: 84  AGGITGGPLIEYLGRRSTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSL 143

Query: 182 PMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLL 241
           P+Y  E  + E+RGTLG         GIL  Y  GS+ +   L+ + A LP+ F+ LM++
Sbjct: 144 PVYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLILMII 203

Query: 242 MPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD-MQNSLEKER-SDKVPLMQAFST 299
           +PE+P++ + + + ++A+++L+W RG E D++ E+ + MQ+  + +R + +   ++ F  
Sbjct: 204 IPETPRWFVNRGQEERARKALKWLRGKEADVEPELKELMQSQADADRQATQNTCLELFKR 263

Query: 300 PAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
              K  L I LG+MF QQF GINAV+FYTV+IFK
Sbjct: 264 NNLKP-LSISLGLMFFQQFSGINAVIFYTVQIFK 296

Fails to transport trehalose.

Drosophila melanogaster (taxid: 7227)

>sp|A9ZSY3|TRET1_BOMMO Facilitated trehalose transporter Tret1 OS=Bombyx mori GN=Tret1 PE=1 SV=1

 Score =  163 bits (412), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/281 (35%), Positives = 158/281 (56%), Gaps = 11/281 (3%)

Query: 57  SNQQKAKRITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSM 116
           S  QK    TQ +AA   ++G   +G   G+TSPA   ++       +T+ +++++G  M
Sbjct: 41  STTQKLFLWTQLLAAFAVSVGSMNVGFSSGYTSPA---VLTMNITLDITKEEITWVGGLM 97

Query: 117 ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGS 176
            L A+ G  V G L++ +GRK T++  AVP  +GW LI  + +V+M  AGR++ G   G 
Sbjct: 98  PLAALVGGIVGGPLIEYLGRKKTIMGTAVPFTIGWMLIANAINVVMVFAGRVICGVCVGI 157

Query: 177 FAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFV 236
            ++  P+Y  E  + E+RG LG         GIL  + VGS+     L+   A +P+ F 
Sbjct: 158 VSLAFPVYIGETIQPEVRGALGLLPTAFGNTGILLAFLVGSYLDWSNLAFFGAAIPVPFF 217

Query: 237 GLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNS-LEKERSDKVPLMQ 295
            LM+L PE+P++++ K RV++A++SL+W RG   +I+ E+ D+  S  E +R+      Q
Sbjct: 218 LLMILTPETPRWYVSKARVQEARKSLRWLRGKNVNIEKEMRDLTISQTESDRTGGNAFKQ 277

Query: 296 AFSTPAAKRGL---LIGLGVMFIQQFGGINAVVFYTVKIFK 333
            FS    KR L   +I LG+M  QQ  GINAV+FY   IF+
Sbjct: 278 LFS----KRYLPAVMISLGLMLFQQLTGINAVIFYAASIFQ 314

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Bombyx mori (taxid: 7091)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
193575619	489	PREDICTED: facilitated trehalose transpo	0.861	0.586	0.565	1e-93
251736857	489	sugar transporter 1 [Sitobion avenae]	0.861	0.586	0.562	1e-92
193596719	528	PREDICTED: facilitated trehalose transpo	0.909	0.573	0.504	4e-88
328696470	508	PREDICTED: facilitated trehalose transpo	0.915	0.600	0.516	2e-84
291461561	485	sugar transporter 1 [Nilaparvata lugens]	0.849	0.583	0.489	7e-76
289742799	479	solute carrier family 2 [Glossina morsit	0.819	0.569	0.472	2e-70
119855473	486	facilitative hexose transporter 1 [Nilap	0.801	0.549	0.481	4e-69
322796559	501	hypothetical protein SINV_07455 [Solenop	0.909	0.604	0.445	2e-66
242020632	500	sugar transporter, putative [Pediculus h	0.906	0.604	0.442	1e-65
332019321	502	Sugar transporter ERD6-like 7 [Acromyrme	0.912	0.605	0.449	6e-65

>gi|193575619|ref|XP_001942953.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum]

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 164/290 (56%), Positives = 218/290 (75%), Gaps = 3/290 (1%)

Query: 47  KMGISQQTLVSNQQK---AKRITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFL 103
           K+ ++Q+ +V  Q+     ++ TQY+AA  ATIGGFI GT LGWT+PAG  +   +Y F+
Sbjct: 5   KIAMTQRAMVEEQEARIGNQKWTQYLAAFIATIGGFIAGTALGWTAPAGPMMENNQYSFV 64

Query: 104 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMF 163
           ++  +L++IG+ M LGA+ G PV   LVD +GRKN ML+L +PTLVGW +IIW++SV   
Sbjct: 65  ISNENLAWIGACMPLGAMLGCPVTAGLVDKLGRKNMMLMLCIPTLVGWAMIIWAESVAWI 124

Query: 164 CAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYG 223
           CAGRLLTGF  GS +V+VP+YT+EIAE EIRGTLGTYFQLQ T GILF Y +GS+ +V+G
Sbjct: 125 CAGRLLTGFASGSLSVIVPLYTSEIAEKEIRGTLGTYFQLQVTGGILFTYVIGSYFNVFG 184

Query: 224 LSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSL 283
           L+IICA++PI +V LM+L+PESP FHL K  V++A+ SL++FRG    +D E++ MQ+SL
Sbjct: 185 LTIICAIIPIVYVALMVLIPESPNFHLMKGNVEKARLSLRYFRGPYGTVDQELSIMQDSL 244

Query: 284 EKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
            K   ++VPLM+AF T  AKRGL IGLGVM +QQF G NAV+FY   IFK
Sbjct: 245 AKTERERVPLMEAFQTTPAKRGLFIGLGVMLLQQFSGCNAVIFYATFIFK 294

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|251736857|gb|ACT10281.1| sugar transporter 1 [Sitobion avenae]

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 163/290 (56%), Positives = 215/290 (74%), Gaps = 3/290 (1%)

Query: 47  KMGISQQTLVSNQQK---AKRITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFL 103
           K+ ++Q+ +   QQ     ++ TQY+AA  ATIGGFI GT LGWT+PAG  +   +Y F+
Sbjct: 5   KIAMTQRAMAEEQQARIGNQKWTQYLAAFIATIGGFIAGTALGWTAPAGPMMENNQYSFV 64

Query: 104 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMF 163
           ++   L++IG+ M LGA+ G PV   LVD +GRKN M++L +PTLVGW ++IW++SV   
Sbjct: 65  ISNESLAWIGACMPLGAMLGCPVTAGLVDKLGRKNMMIMLCIPTLVGWAMMIWAESVAWI 124

Query: 164 CAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYG 223
           CAGRLLTGF  GS +V+VP+YT+EIAE EIRGTLGTYFQLQ T GILF Y VGS+  V+G
Sbjct: 125 CAGRLLTGFASGSLSVIVPLYTSEIAEKEIRGTLGTYFQLQVTGGILFTYIVGSYFDVFG 184

Query: 224 LSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSL 283
           L+IICA++PI +V LM+L+PESP FHL K  V++A+ SL++FRG    +D E++ MQ+SL
Sbjct: 185 LTIICAIIPIVYVALMVLIPESPNFHLMKGNVEKARLSLRYFRGPYGTVDQELSIMQDSL 244

Query: 284 EKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
            K   ++VPLM+AF T  AKRGL IGLGVM +QQF G NAV+FY   IFK
Sbjct: 245 AKTERERVPLMEAFQTTPAKRGLFIGLGVMLLQQFSGCNAVIFYATYIFK 294

Source: Sitobion avenae

Species: Sitobion avenae

Genus: Sitobion

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193596719|ref|XP_001950031.1| PREDICTED: facilitated trehalose transporter Tret1-like isoform 1 [Acyrthosiphon pisum] gi|328696681|ref|XP_003240096.1| PREDICTED: facilitated trehalose transporter Tret1-like isoform 2 [Acyrthosiphon pisum]

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 158/313 (50%), Positives = 221/313 (70%), Gaps = 10/313 (3%)

Query: 22  FSSSAPQFDDVKPL-VSPVDKMAAETKMGISQQTLVSNQQKAKRITQYMAALTATIGGFI 80
           +S  +P  D   P  ++   ++AAE+         +  Q K ++  QY+AAL ATIGGFI
Sbjct: 37  YSEKSPLVDKKVPKSITIAQQIAAES---------IETQIKTQKRNQYLAALIATIGGFI 87

Query: 81  MGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM 140
           MGT LGWT+PAG  +  G+Y F +T  ++S+I S M LGA+ G PV+ +LV+ +GRK+ M
Sbjct: 88  MGTTLGWTAPAGPMMENGQYGFQITVENVSWIASVMPLGAMLGCPVMASLVNKLGRKHLM 147

Query: 141 LLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTY 200
           ++L +PTL GW +IIW++SV+  CAGR LTGF  GS++V+VP+YT+EIAE EIRGTLGTY
Sbjct: 148 IMLTIPTLFGWAMIIWAKSVVWICAGRFLTGFSSGSYSVIVPLYTSEIAEKEIRGTLGTY 207

Query: 201 FQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKE 260
           FQLQ  AGILF Y VGS+ +V+GLS+ CA++P+ ++ LM L+PESP F+L K  V++A+ 
Sbjct: 208 FQLQVNAGILFTYVVGSYLNVFGLSVACAIVPVIYICLMFLIPESPIFYLMKKNVEKAQL 267

Query: 261 SLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGG 320
           SL++FR     ++ E+  MQ++L K   ++VP+M+AF T  AKRGL +GLGVM  QQF G
Sbjct: 268 SLKYFRKPVVHVNQELNTMQSALAKTERERVPIMEAFQTTPAKRGLCLGLGVMVFQQFTG 327

Query: 321 INAVVFYTVKIFK 333
            NAV+FY   IF 
Sbjct: 328 CNAVIFYATTIFN 340

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328696470|ref|XP_001943804.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum]

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 159/308 (51%), Positives = 208/308 (67%), Gaps = 3/308 (0%)

Query: 27  PQFDDVKPLVSP-VDKMAAETKMGISQQTLVSNQQKAKRITQYMAALTATIGGFIMGTIL 85
           P   +V    SP VDK   +T + + Q      + K  R TQY+A L  TIGGFIMGT L
Sbjct: 28  PSLKEVYSEQSPLVDKTLYQT-INLPQNISFGCKNKQYR-TQYLATLIVTIGGFIMGTTL 85

Query: 86  GWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAV 145
           GWTSPAG  +  G+Y F +T+ D+S+I S M LGA+ G P +G LV+ +GRK+ M++L +
Sbjct: 86  GWTSPAGPMMAHGQYGFPITDDDISWIASCMPLGAMLGCPFMGGLVNKLGRKSLMIMLTI 145

Query: 146 PTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQC 205
           P L+GW +IIW+ SV M C GRL  GF  GS++V+VP YTAEIA+ EIRGTLGTYFQLQ 
Sbjct: 146 PALLGWAMIIWADSVTMICIGRLFNGFASGSYSVIVPQYTAEIADKEIRGTLGTYFQLQV 205

Query: 206 TAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWF 265
            +GILF Y +GS+  V+GLSI CA++P  +  LM L+PESP F+L K  + +A+ SL++F
Sbjct: 206 FSGILFTYVIGSYLDVFGLSIACAIVPAVYFCLMFLVPESPIFYLTKGNIIKARWSLKYF 265

Query: 266 RGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVV 325
           R     +D E+  MQ+SL K   +KVP+M+AF T  AKRGL +GLGVM   QF G N V+
Sbjct: 266 RRPFGQVDQELITMQDSLAKTEREKVPIMKAFQTTPAKRGLFLGLGVMVFMQFTGCNTVI 325

Query: 326 FYTVKIFK 333
           FYT  IF 
Sbjct: 326 FYTTTIFN 333

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291461561|dbj|BAI83415.1| sugar transporter 1 [Nilaparvata lugens]

 Score =  290 bits (742), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 139/284 (48%), Positives = 201/284 (70%), Gaps = 1/284 (0%)

Query: 50  ISQQTLVSNQQKAKRITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDL 109
           +S QTLVS    A ++ QY+AAL ATIGGF +GT+LGWTSP    L +  Y F V     
Sbjct: 8   VSAQTLVSTAVPAAKLPQYVAALIATIGGFCLGTVLGWTSPVLTSL-SDYYGFEVNVDSQ 66

Query: 110 SFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLL 169
           ++IGS MA+GA+ G   +  ++DT GRK+T+++L VPT+  W +II++ SV + C  R +
Sbjct: 67  AWIGSIMAIGAMVGCLPMSWMLDTFGRKSTIIILTVPTVAAWMMIIFAPSVTVICIARFI 126

Query: 170 TGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICA 229
            GF  G++AV VP+YT+EI+E EIRGTLGTYFQLQ T GI   Y +GS   ++ ++++C 
Sbjct: 127 LGFTTGAYAVAVPLYTSEISENEIRGTLGTYFQLQLTIGITSAYILGSLLPIFWMTMVCG 186

Query: 230 LLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSD 289
            +P+     ML++PE+P ++LKK RV +A+++LQWFRGS YD++ E+  ++ +L++  ++
Sbjct: 187 CIPVVLALAMLIIPETPTYYLKKFRVDEARKALQWFRGSHYDVEPELMLLKANLDQMEAE 246

Query: 290 KVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
           +VP  QAF T  AKRGL++GLGVMF QQF G+NAV+FY   IFK
Sbjct: 247 RVPFTQAFVTTPAKRGLVVGLGVMFFQQFSGVNAVIFYAESIFK 290

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289742799|gb|ADD20147.1| solute carrier family 2 [Glossina morsitans morsitans]

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/273 (47%), Positives = 188/273 (68%)

Query: 61  KAKRITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGA 120
           ++K   QY+AAL+AT G F  GT+LGWTSPA +RLI GEY F V+ +  S+IGS+M LGA
Sbjct: 8   ESKTFPQYVAALSATGGAFAAGTLLGWTSPAQNRLIGGEYGFPVSTAAFSWIGSAMTLGA 67

Query: 121 VFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVV 180
            F    +G L++ +GRK TMLLL +P  +GW L+IW+Q+V M  A R + G  GG+F V 
Sbjct: 68  AFICIPIGFLINMIGRKLTMLLLVLPFTLGWALLIWAQNVEMMYAARFILGISGGAFCVT 127

Query: 181 VPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLML 240
            PMYT EIA+ +IRGTLG++FQL  TAGILF+YA+G+   V+ +S++C ++P+ F  + +
Sbjct: 128 APMYTGEIAQKDIRGTLGSFFQLMITAGILFIYAIGAGLDVFAMSLVCGVIPLIFGAIFV 187

Query: 241 LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTP 300
            MPESP + + K++ + A +S+QW RG +YD + E+ +++ + E+ + + V +  A   P
Sbjct: 188 FMPESPTYLVSKSKNESAIKSIQWLRGKDYDYNPELEELKATEEQIKQNSVSVGTALLRP 247

Query: 301 AAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
              + L I LG+MF QQ  GINAV+FY+  IFK
Sbjct: 248 VTLKALAISLGLMFFQQLCGINAVIFYSTDIFK 280

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119855473|gb|ABM01870.1| facilitative hexose transporter 1 [Nilaparvata lugens]

 Score =  268 bits (684), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 129/268 (48%), Positives = 189/268 (70%), Gaps = 1/268 (0%)

Query: 50  ISQQTLVSNQQKAKRITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDL 109
           +S QTLVS    A ++ QY+AAL ATIGGF +GT+LGWTSP    L +  Y F V     
Sbjct: 8   VSAQTLVSTAVPAAKLPQYVAALIATIGGFCLGTVLGWTSPVLTSL-SDYYGFEVNVDSQ 66

Query: 110 SFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLL 169
           ++IGS MA+GA+ G   +  ++DT GRK+T+++L VPT+  W +II++ SV + C  R +
Sbjct: 67  AWIGSIMAIGAMVGGLPMSWMLDTFGRKSTIIILTVPTVAAWMMIIFAPSVTVICIARFI 126

Query: 170 TGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICA 229
            GF  G++AV VP+YT+EI+E EIRGTLGTYFQLQ T GI   Y +GS   ++ ++++C 
Sbjct: 127 LGFTTGAYAVAVPLYTSEISENEIRGTLGTYFQLQLTIGITSAYILGSLLPIFWMTMVCG 186

Query: 230 LLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSD 289
            +P+     ML++PE+P ++LKK RV +A+++LQWFRGS YD++ E+  ++ +L++  ++
Sbjct: 187 CIPVVLALAMLIIPETPTYYLKKFRVDEARKALQWFRGSHYDVEPELMLLKANLDQMEAE 246

Query: 290 KVPLMQAFSTPAAKRGLLIGLGVMFIQQ 317
           +VP  QAF T  AKRGL++GLGVMF QQ
Sbjct: 247 RVPFTQAFVTTPAKRGLVVGLGVMFFQQ 274

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796559|gb|EFZ19033.1| hypothetical protein SINV_07455 [Solenopsis invicta]

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 138/310 (44%), Positives = 197/310 (63%), Gaps = 7/310 (2%)

Query: 30  DDVKPLVSPVDKMAAETKMGISQQTLVSNQQK---AKRITQYMAALTATIGGFIMGTILG 86
           D+  PL+S   +   E K+ ISQQTLVSN  +   AKR+ QY+AAL AT+G    G +LG
Sbjct: 18  DESTPLLSRSGQTMVE-KISISQQTLVSNNGQLGQAKRLPQYIAALAATLGAVAAGMVLG 76

Query: 87  WTSPAGDR--LIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLA 144
           W+SPAG     +  +Y   +  ++ S++GS   LGA      +G + D +GRK  ML++ 
Sbjct: 77  WSSPAGKNGVNLQKDYNITMDATEFSWVGSLATLGAGVICIPIGVIADLIGRKTAMLVMV 136

Query: 145 VPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQ 204
           VP +VGW LII S S+IMF  GR +TG GGG+F V  P+YTAEIAE EIRG LGTYFQL 
Sbjct: 137 VPFVVGWILIICSNSMIMFYFGRFITGLGGGTFCVAAPLYTAEIAEKEIRGALGTYFQLM 196

Query: 205 CTAGILFVYAVGS-WASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQ 263
            T GIL  Y +G+   +++ LSII A++P+ F    + MPE+P ++LKKN  + A+ SL 
Sbjct: 197 LTIGILISYILGAVIENMFTLSIISAVIPLIFFVAFIFMPETPVYYLKKNNQEAARNSLI 256

Query: 264 WFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINA 323
             RG++Y+I++E+ +MQ +LE+ +           T A K+G +I  G+M  QQ  G+NA
Sbjct: 257 KLRGNQYNIEAELQEMQEALEETKRSGASFTDLIQTKAVKKGFVIAYGLMLFQQMSGVNA 316

Query: 324 VVFYTVKIFK 333
           ++FY+  IF+
Sbjct: 317 IIFYSSDIFE 326

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020632|ref|XP_002430756.1| sugar transporter, putative [Pediculus humanus corporis] gi|212515953|gb|EEB18018.1| sugar transporter, putative [Pediculus humanus corporis]

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 138/312 (44%), Positives = 193/312 (61%), Gaps = 10/312 (3%)

Query: 28  QFDDVKPLVSPVDKMAAETKMGISQQTLVSNQQKAKRITQYMAALTATIGGFIMGTILGW 87
           +F +  PL+  +D    +     S + LVSN    K+  QY+AA+++T+G F +GT L W
Sbjct: 18  EFGEETPLLVKMDDNDMKKS---SVEVLVSNDS-GKKFPQYLAAVSSTLGAFALGTTLAW 73

Query: 88  TSPAGD------RLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML 141
           TSP           I  ++         S++G+ M LGA   S ++G L+  +GRK TML
Sbjct: 74  TSPVSSSENNYINDIMKDFTPEQIHKAWSWVGALMPLGAAIISTMIGWLLGKLGRKGTML 133

Query: 142 LLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYF 201
            L +P  +GW LII    + M   GRL+ G  GG+FAV  P+YTAEIAE EIRG LG+YF
Sbjct: 134 TLVIPFTIGWALIIKPCGIWMVYLGRLILGMSGGAFAVAAPVYTAEIAEKEIRGALGSYF 193

Query: 202 QLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKES 261
           QL  T GILFVY +G   +   LSIIC ++P+ F  +   MPESP++ L KN+   A++S
Sbjct: 194 QLMVTLGILFVYIIGGKVTAQVLSIICGVIPLIFALIFFFMPESPEYLLSKNQENAARKS 253

Query: 262 LQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGI 321
           LQ+FRG  Y ++ E+ ++Q+ L+K + +K  L+Q+FST AAK  L I LG+MFIQQ  G+
Sbjct: 254 LQFFRGKNYPVEVELNEIQSHLDKFKMEKQSLIQSFSTKAAKMSLFISLGLMFIQQLSGV 313

Query: 322 NAVVFYTVKIFK 333
           NAV+FYT  IFK
Sbjct: 314 NAVIFYTGDIFK 325

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019321|gb|EGI59828.1| Sugar transporter ERD6-like 7 [Acromyrmex echinatior]

 Score =  254 bits (648), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 139/309 (44%), Positives = 199/309 (64%), Gaps = 5/309 (1%)

Query: 30  DDVKPLVSPVDKMAAETKMGISQQTLVSNQQ--KAKRITQYMAALTATIGGFIMGTILGW 87
           D+  PL+S   +  +  K+GISQQTLVS     +AKR+ QY+A L AT+G    G +LGW
Sbjct: 19  DERTPLLSASGQAMSVEKIGISQQTLVSTDGLGRAKRLPQYLAGLAATLGALAAGMVLGW 78

Query: 88  TSPAGDR--LIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAV 145
           TSPAG+    +A  Y   ++ ++ S+IGS   LGA      +G + D +GRK  ML++ V
Sbjct: 79  TSPAGENGVNLAKNYDIKISITEFSWIGSLATLGAGAMCIPIGIIADLIGRKTAMLIMVV 138

Query: 146 PTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQC 205
           P  +GW LII+S SV+MF  GR +TG  GG+F V  P+YTAEIAE EIRGTLG+YFQL  
Sbjct: 139 PFTIGWLLIIFSNSVLMFYFGRFITGLSGGAFCVAAPLYTAEIAEKEIRGTLGSYFQLLL 198

Query: 206 TAGILFVYAVGS-WASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQW 264
           T GIL  Y  G+   ++  LSIICA++P+ F G+   MPE+P ++LKK   + A++SL  
Sbjct: 199 TVGILAAYVFGAIIENMRTLSIICAVMPLIFFGIFFFMPETPVYYLKKGNEEAARKSLIK 258

Query: 265 FRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAV 324
           FRG+EYD+++E+   + +LE+ R        +  +PAAK+G +I  G+M  QQ  G+N++
Sbjct: 259 FRGNEYDVEAELQAHREALEETRRSGRSFFDSIKSPAAKKGFVIAYGLMLFQQMSGVNSI 318

Query: 325 VFYTVKIFK 333
           +FY+  IF 
Sbjct: 319 IFYSSDIFS 327

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
FB|FBgn0036316	539	CG10960 [Drosophila melanogast	0.858	0.530	0.444	8.5e-65
FB|FBgn0028560	444	sut4 "sugar transporter 4" [Dr	0.795	0.596	0.368	2.8e-50
FB|FBgn0037386	502	CG1208 [Drosophila melanogaste	0.708	0.470	0.375	2.9e-50
FB|FBgn0034247	465	CG6484 [Drosophila melanogaste	0.819	0.587	0.367	1.5e-49
UNIPROTKB|Q7PIR5	793	Tret1 "Facilitated trehalose t	0.795	0.334	0.373	3.5e-43
UNIPROTKB|A5LGM7	504	Tret1 "Facilitated trehalose t	0.795	0.525	0.377	4.5e-43
UNIPROTKB|B4P624	856	Tret1 "Facilitated trehalose t	0.795	0.309	0.366	1.1e-42
UNIPROTKB|B4LPX5	911	Tret1 "Facilitated trehalose t	0.804	0.294	0.355	1.7e-42
UNIPROTKB|B4KR05	863	Tret1 "Facilitated trehalose t	0.804	0.310	0.344	3.4e-42
UNIPROTKB|B4QBN2	857	Tret1-1 "Facilitated trehalose	0.792	0.308	0.368	4e-42

FB|FBgn0036316 CG10960 [Drosophila melanogaster (taxid:7227)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 129/290 (44%), Positives = 187/290 (64%)

Query:    45 ETKMGISQQTLVSNQQKAKRITQYMAALTATIGGFIMGTILGWTSPAGDRLI-AGE-YPF 102
             E  +G    T  SN   +++  QY+AAL A  G F  GT+LGWTSPA   ++  GE Y F
Sbjct:    63 ENLLGNMVHTSTSNN--SQKWPQYVAALAAAGGAFAAGTVLGWTSPAETEIVDRGEGYDF 120

Query:   103 LVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIM 162
              V +   S++GS+M LGA      +G L++ +GRK TML L +P ++GW ++IW+ +V M
Sbjct:   121 PVDKDQFSWVGSAMTLGAACVCIPIGFLINMIGRKWTMLFLVLPFILGWTMLIWAVNVSM 180

Query:   163 FCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVY 222
               A R + G  GG+F V  PMYT EIA+ EIRGTLG++FQL  T GILFVYAVG+   ++
Sbjct:   181 LYASRFILGIAGGAFCVTAPMYTGEIAQKEIRGTLGSFFQLMITIGILFVYAVGAGVKIF 240

Query:   223 GLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNS 282
              LSIIC +LP+ F  +   MPESP + + K+R + A +S+QW RG EYD + E+ +++ +
Sbjct:   241 WLSIICGILPLIFGAIFFFMPESPTYLVSKDRSENAIKSIQWLRGKEYDYEPELAELRET 300

Query:   283 LEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIF 332
               + +++KV +  A + P  ++ L I +G+MF QQ  GINAV+FY  +IF
Sbjct:   301 DRETKANKVNVWAALNRPVTRKALAISMGLMFFQQVCGINAVIFYASRIF 350

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=IMP

FB|FBgn0028560 sut4 "sugar transporter 4" [Drosophila melanogaster (taxid:7227)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 99/269 (36%), Positives = 159/269 (59%)

Query:    66 TQYMAALTATIGGFIMGTILGWTSPAGDRLI-AGEYPFLVTESDLSFIGSSMALGAVFGS 124
             TQ++      +G F +G ++GW+ P  + +  +  Y F   +++   +GS M LGA F  
Sbjct:     5 TQFIVGFIGALGAFCLGAVIGWSGPVENEVKNSNAYNFTPRQTEWGLVGSLMTLGAAFSC 64

Query:   125 PVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMY 184
               VG L+  +GRK TML+L  P  +GW LI+ +  + M   GR + GF GG+F V  PMY
Sbjct:    65 IPVGVLIGKIGRKTTMLILLPPFFIGWLLILLASHIAMLLLGRFVVGFCGGAFCVTCPMY 124

Query:   185 TAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLLMPE 244
               EIA+ + RGT+G +FQL    GIL+ + VG +   +  +I CA+LP+ F  LM+ MPE
Sbjct:   125 VTEIAQVQYRGTMGCFFQLLIVFGILYAFVVGGFVKTFYFNIACAILPVIFFVLMIFMPE 184

Query:   245 SPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKR 304
             SP F  +K + ++A++SL++ RG + D+  E+ +M    +KE++    ++    T    +
Sbjct:   185 SPIFLAQKGKAEKAEKSLKFLRGKDADVSGELKEMSAEGQKEKASVGKILCRRIT---LK 241

Query:   305 GLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
             GL + +G+M  QQ  GINA++FY+  IF+
Sbjct:   242 GLFLSIGLMLFQQMTGINAIIFYSTFIFE 270

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0037386 CG1208 [Drosophila melanogaster (taxid:7227)]

 Score = 441 (160.3 bits), Expect = 2.9e-50, Sum P(2) = 2.9e-50
 Identities = 89/237 (37%), Positives = 143/237 (60%)

Query:    97 AGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW 156
             + E    +T+S  + +GS +  GA+FG+   G + D +GR+ T +++ +P ++ W  + +
Sbjct:    93 SNENDIRLTDSQKTLVGSMLPFGALFGALPSGYIADRIGRRYTAMVMDIPFILAWITLSF 152

Query:   157 SQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVG 216
             + SV     GR L G   GSF VV PMY +EIAET IRG+LGT FQL  T GILF+Y VG
Sbjct:   153 ANSVGWLYLGRFLIGIATGSFCVVAPMYISEIAETSIRGSLGTLFQLLLTIGILFIYVVG 212

Query:   217 SWASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEI 276
             +  S   LS++C ++PI  +  + ++PE+P + LK  +  +A  +L+W  G   +  + I
Sbjct:   213 ALVSWKTLSLLCLIIPILLLVGLFIVPETPVYLLKNGKRSEANRALKWLWGDYCNTSNAI 272

Query:   277 TDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
               +QN L++   D   +   FS  A++ G++I + +M  QQF GINAV+F+  +IF+
Sbjct:   273 QAIQNDLDQTGVD-ASVKDLFSNRASRNGMVISVLLMVFQQFSGINAVIFFMNEIFE 328

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0034247 CG6484 [Drosophila melanogaster (taxid:7227)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 101/275 (36%), Positives = 163/275 (59%)

Query:    61 KAKRITQYMAALTATIGGFIMGTILGWTSPAGDRLIAG-EYPFLVTESDLSFIGSSMALG 119
             K   + QY+A L+A+ G   MG  +GW+SP  + +    EY F ++ S   ++ S + LG
Sbjct:     3 KGSVLPQYIAGLSASFGALCMGASIGWSSPVENMITVNTEYGFPISSSQFGWVSSLLTLG 62

Query:   120 AVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAV 179
             A      +G  +D +GR+ TML L  P +VGW L++++++V M   GR + G  GG+F V
Sbjct:    63 ATVICIPIGFAIDWIGRRPTMLALIPPYMVGWVLMLFAKNVTMLYFGRFILGMCGGAFCV 122

Query:   180 VVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLM 239
               PMY  EI  T +RGT+G++FQL   +G+L+ Y VG++  +  ++I+CA+LP+ F  + 
Sbjct:   123 TAPMYCTEITATALRGTIGSFFQLLIVSGVLYGYLVGAFLPLLTINILCAILPVIFAIIH 182

Query:   240 LLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERS-DKVPLMQAFS 298
               MPESP +   K R   A ++LQW RG + DID E+ ++    +K+    +V ++ +  
Sbjct:   183 FFMPESPVYLAMKGRNDDAAKALQWLRGKDADIDDELKEILEESQKQIDMPQVNILSSLR 242

Query:   299 TPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
              P   +GL I + +   QQ+ GINAV+FY+  IF+
Sbjct:   243 RPIVLKGLGIAVLLQVFQQWTGINAVLFYSASIFE 277

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q7PIR5 Tret1 "Facilitated trehalose transporter Tret1" [Anopheles gambiae (taxid:7165)]

 Score = 443 (161.0 bits), Expect = 3.5e-43, Sum P(2) = 3.5e-43
 Identities = 102/273 (37%), Positives = 156/273 (57%)

Query:    66 TQYMAALTATIGGFIMGTILGWTSPA----GDRLIAGEYPFLVTESDLSFIGSSMALGAV 121
             TQ +AAL+ ++G  ++G    +TSPA     DR I     F VT+   S++G  M L  +
Sbjct:   331 TQVLAALSVSLGSMVVGFSSAYTSPALVSMKDRNITS---FEVTDQSGSWVGGIMPLAGL 387

Query:   122 FGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVV 181
              G  + G +++ +GRKNT+L  A P ++ W LI  +  V M   GR L+G   G  ++ +
Sbjct:   388 AGGILGGPMIEYLGRKNTILATATPFIISWLLIGCATHVAMVLVGRALSGLCVGIASLSL 447

Query:   182 PMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLL 241
             P+Y  E  + E+RGTLG         GIL  +  G +    GL+ + A LPI F+ LM L
Sbjct:   448 PVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGKYLDWSGLAFLGAALPIPFLLLMFL 507

Query:   242 MPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNS-LEKERSDKVPLMQAFSTP 300
             +PE+P++++ +NR  +A+++LQW RG + D++ E+  +  S  + ER      M      
Sbjct:   508 IPETPRWYVSRNREDRARKALQWLRGRKADVEPELKGISKSHQDAERHASSSAMLDLLNK 567

Query:   301 AAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
             A  + LLI LG+MF QQ  GINAV+FYTV+IF+
Sbjct:   568 ANLKPLLISLGLMFFQQLSGINAVIFYTVQIFQ 600

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

UNIPROTKB|A5LGM7 Tret1 "Facilitated trehalose transporter Tret1" [Polypedilum vanderplanki (taxid:319348)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 103/273 (37%), Positives = 160/273 (58%)

Query:    66 TQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYP----FLVTESDLSFIGSSMALGAV 121
             TQ +AA+  ++G  ++G    +TSPA   L++ +      F VTE + S++G  M L  +
Sbjct:    42 TQILAAIAVSMGSMVVGFASAYTSPA---LVSMQNTTITSFKVTEQEASWVGGIMPLAGL 98

Query:   122 FGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVV 181
              G    G  ++ +GRKNT+L  AVP +V W LI ++ S+ M  AGR L+GF  G  ++ +
Sbjct:    99 AGGIAGGPFIEYLGRKNTILATAVPFIVAWLLIAFANSIWMVLAGRALSGFCVGIASLSL 158

Query:   182 PMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLL 241
             P+Y  E  + E+RGTLG         GIL  +  G + +  GL+ I ++LPI F+ L LL
Sbjct:   159 PVYLGETVQPEVRGTLGLLPTAFGNIGILICFVAGKYVNWSGLAFIGSILPIPFMVLTLL 218

Query:   242 MPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNS-LEKERSDKVPLMQAFSTP 300
             +PE+P++ + + R ++A+++LQW RG + D++ E+  +  S  E ER      +      
Sbjct:   219 IPETPRWFVTRGREERARKALQWLRGKKADVEPELKGIVKSHCEAERHASQNAIFDLMKR 278

Query:   301 AAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
             +  + LLI LG+MF QQ  GINAV+FYTV IFK
Sbjct:   279 SNLKPLLIALGLMFFQQLSGINAVIFYTVSIFK 311

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

UNIPROTKB|B4P624 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila yakuba (taxid:7245)]

 Score = 430 (156.4 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 100/273 (36%), Positives = 158/273 (57%)

Query:    66 TQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYP----FLVTESDLSFIGSSMALGAV 121
             TQ +AAL+ ++G  ++G +  +TSPA   L++   P    F VT+   S++G  M L  +
Sbjct:   394 TQVIAALSVSLGSLVVGFVSAYTSPA---LVSMSDPNITSFTVTKDAGSWVGGIMPLAGL 450

Query:   122 FGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVV 181
              G    G L++ +GR+NT+L  AVP +V   LI  + +V M   GR L GF  G  ++ +
Sbjct:   451 VGGVAGGPLIEYMGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSL 510

Query:   182 PMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLL 241
             P+Y  E  + E+RGTLG         GIL  +  GS+ +   L+ + A LP+ F+ LM L
Sbjct:   511 PVYLGETVQPEVRGTLGLLPTAFGNIGILVCFVAGSFMNWSMLAFLGAALPVPFLILMFL 570

Query:   242 MPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD-MQNSLEKERSDKVPLMQAFSTP 300
             +PE+P++++ + R ++A+++L W RG E D++ E+   M++  + +R      M      
Sbjct:   571 IPETPRWYVSRGREERARKALTWLRGKEADVEPELKGLMRSQADADRQATQNTMLELLKR 630

Query:   301 AAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
                + L I LG+MF QQF GINAV+FYTV+IFK
Sbjct:   631 NNLKPLSISLGLMFFQQFSGINAVIFYTVQIFK 663

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4LPX5 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila virilis (taxid:7244)]

 Score = 428 (155.7 bits), Expect = 1.7e-42, Sum P(2) = 1.7e-42
 Identities = 96/270 (35%), Positives = 154/270 (57%)

Query:    66 TQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYP-FLVTESDLSFIGSSMALGAVFGS 124
             TQ +AAL+ ++G  ++G    +TSPA   +       F+VT    S++G  M L  + G 
Sbjct:   449 TQVLAALSVSLGSLVVGFASAYTSPALVSMTNTNLTSFVVTPQAASWVGGIMPLAGLAGG 508

Query:   125 PVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMY 184
                G  ++ +GR+NT+L  AVP +V W LI  + +VIM   GR L GF  G  ++ +P+Y
Sbjct:   509 IAGGPFIEYLGRRNTILATAVPFIVSWLLIACAVNVIMVLCGRFLAGFCVGIASLSLPVY 568

Query:   185 TAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLLMPE 244
               E  + E+RGTLG         GIL  +  G++     L+ + A LP+ F+ LM L+PE
Sbjct:   569 LGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGASLPVPFLILMFLIPE 628

Query:   245 SPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD-MQNSLEKERSDKVPLMQAFSTPAAK 303
             +P++++ + R ++A+++L W RG E D++ E+   M++  + +R      M      +  
Sbjct:   629 TPRWYVSRGREERARKALVWLRGKEADVEPELKGLMRSQADADRQATQNKMLELLKRSNL 688

Query:   304 RGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
             + L I LG+MF QQ  GINAV+FYTV+IF+
Sbjct:   689 KPLSISLGLMFFQQLSGINAVIFYTVQIFQ 718

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4KR05 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila mojavensis (taxid:7230)]

 Score = 424 (154.3 bits), Expect = 3.4e-42, Sum P(2) = 3.4e-42
 Identities = 93/270 (34%), Positives = 153/270 (56%)

Query:    66 TQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYP-FLVTESDLSFIGSSMALGAVFGS 124
             TQ +AAL+ ++G  ++G    +TSPA   +       F+VT    S++G  M L  + G 
Sbjct:   401 TQVLAALSVSLGSLVVGFASAYTSPALVSMTNTNLTSFVVTPQAASWVGGIMPLAGLAGG 460

Query:   125 PVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMY 184
                G  ++ +GR+NT+L  AVP ++ W LI  + +V+M   GR L GF  G  ++ +P+Y
Sbjct:   461 IAGGPFIEYLGRRNTILATAVPFIISWLLIACAVNVVMVLCGRFLAGFCVGIASLSLPVY 520

Query:   185 TAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLLMPE 244
               E  + E+RGTLG         GIL  +  G++     L+ +   LP+ F+ LM L+PE
Sbjct:   521 LGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGGTLPVPFLILMFLIPE 580

Query:   245 SPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD-MQNSLEKERSDKVPLMQAFSTPAAK 303
             +P++++ + R ++A+++L W RG E D++ E+   M++  + +R      M      +  
Sbjct:   581 TPRWYVSRGREERARKALVWLRGKEADVEPELKGLMRSQADADRQATQNTMLELLKRSNL 640

Query:   304 RGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
             + L I LG+MF QQ  GINAV+FYTV+IF+
Sbjct:   641 KPLSISLGLMFFQQLSGINAVIFYTVQIFQ 670

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4QBN2 Tret1-1 "Facilitated trehalose transporter Tret1-1" [Drosophila simulans (taxid:7240)]

 Score = 425 (154.7 bits), Expect = 4.0e-42, Sum P(2) = 4.0e-42
 Identities = 101/274 (36%), Positives = 161/274 (58%)

Query:    66 TQYMAALTATIGGFIMGTILGWTSPA----GDRLIAGEYPFLVTESDLSFIGSSMALGAV 121
             TQ +AAL+ ++G  ++G +  +TSPA     DR I     F VT+   S++G  M L  +
Sbjct:   395 TQVLAALSVSLGSLVVGFVSAYTSPALVSMTDRNITS---FEVTQDAGSWVGGIMPLAGL 451

Query:   122 FGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVV 181
              G    G L++ +GR+NT+L  AVP +V   LI  + +V M   GR L GF  G  ++ +
Sbjct:   452 AGGIAGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSL 511

Query:   182 PMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLL 241
             P+Y  E  + E+RGTLG         GIL  +  GS+ +   L+ + A LP+ F+ LM L
Sbjct:   512 PVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILMFL 571

Query:   242 MPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD-MQNSLEKER-SDKVPLMQAFST 299
             +PE+P++ + +   ++A+++L+W RG E D++ E+   M++  + +R + +  +++ F  
Sbjct:   572 IPETPRWFVGRGLEERARKALKWLRGKEADVEPELKGLMRSQADADRQASRNTMLELFKR 631

Query:   300 PAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
                K  L I LG+MF QQF GINAV+FYTV+IFK
Sbjct:   632 INLKP-LSISLGLMFFQQFSGINAVIFYTVQIFK 664

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	333
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	6e-42
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	7e-36
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	7e-20
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-14
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	2e-13
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-11
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	1e-09
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-07
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	2e-07
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	8e-07
COG2223	417	COG2223, NarK, Nitrate/nitrite transporter [Inorga	2e-05
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	3e-05
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	1e-04
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	0.001
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	0.002
TIGR00886	366	TIGR00886, 2A0108, nitrite extrusion protein (nitr	0.002

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  150 bits (382), Expect = 6e-42
 Identities = 84/289 (29%), Positives = 140/289 (48%), Gaps = 35/289 (12%)

Query: 69  MAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESD---------LSFIGSSMALG 119
           +AAL   + G+  G I  + +     LI     F    S             I S  ++G
Sbjct: 4   VAALGGFLFGYDTGVIGAFLT-----LIKFFKRFGALTSIGACAASTVLSGLIVSIFSVG 58

Query: 120 AVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ--SVIMFCAGRLLTGFGGGSF 177
            + GS   G L D  GRK ++L+  V  ++G  L  +++  S  M   GR++ G G G  
Sbjct: 59  CLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGI 118

Query: 178 AVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSI----------- 226
           +V+VPMY +EIA  ++RG LG+ +QL  T GIL    +G      GL+            
Sbjct: 119 SVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIG-----LGLNKYSNSDGWRIPL 173

Query: 227 -ICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEK 285
            +  +  I  +  +L +PESP++ + K ++++A+  L   RG   D+D EI + ++SLE+
Sbjct: 174 GLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVS-DVDQEIQEEKDSLER 232

Query: 286 ERSDKVPLM-QAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
               +     + F     ++ LL+G+ +   QQ  GINA+ +Y+  IF+
Sbjct: 233 SVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFE 281

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  134 bits (340), Expect = 7e-36
 Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 29/296 (9%)

Query: 64  RITQYMAA---LTATIGGF-------IMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIG 113
             T +  A   L A IGG        ++G  L    PA +           + S    + 
Sbjct: 20  GSTYWKVALLSLIAAIGGLMFGYDTGVIGGALAL--PAFEFKFTSANSDSYSSSLWGLVV 77

Query: 114 SSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS---QSVIMFCAGRLLT 170
           S   +G   G+   G L D  GRK ++L++A+  ++G  L+  +    SV M   GR+L 
Sbjct: 78  SIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLL 137

Query: 171 GFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSI---- 226
           G G G  + +VPMY +EIA   +RG L + +QL  T GIL  Y  GS       ++    
Sbjct: 138 GIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRI 197

Query: 227 ---ICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSL 283
              +  +        +  +PESP++ + K RV++A++SL   RG+    D E+ D    +
Sbjct: 198 PLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTS-GEDKELLDELELI 256

Query: 284 EKERSDKVPLMQAF------STPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK 333
           + +RS +   +Q        ST   +R L +G+ + + QQF GINA+++Y+  IF+
Sbjct: 257 DIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE 312

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 89.8 bits (223), Expect = 7e-20
 Identities = 78/321 (24%), Positives = 131/321 (40%), Gaps = 69/321 (21%)

Query: 60  QKAKRITQYMAALT--ATIGGFIMGTILGWTSPAGDRL-----IAGEYPFLVTESDLSFI 112
              +  + Y+ ++T  AT+GG + G      S   + L                S L F 
Sbjct: 1   MNTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFC 60

Query: 113 GSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLV------------------GWGLI 154
            +S  +G + G  + G   +  GR++++ + AV   +                    G  
Sbjct: 61  VASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGY- 119

Query: 155 IWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYA 214
                V  F   R++ G G G  +++ PMY AEIA   IRG L ++ Q     G L VY 
Sbjct: 120 -----VPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYF 174

Query: 215 VG---------------SWASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAK 259
           V                 W  ++    I ALL   F+ L+  +PE+P++ + + + +QA+
Sbjct: 175 VNYFIARSGDASWLNTDGWRYMFASEAIPALL---FLMLLYFVPETPRYLMSRGKQEQAE 231

Query: 260 ESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFI---- 315
             L+   G+       + ++++SL+  R     L            L+ G+GV+ I    
Sbjct: 232 GILRKIMGNT-LATQALQEIKHSLDHGRKTGGKL------------LMFGVGVIVIGVML 278

Query: 316 ---QQFGGINAVVFYTVKIFK 333
              QQF GIN V++Y  +IFK
Sbjct: 279 SVFQQFVGINVVLYYAPEIFK 299

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 44/171 (25%), Positives = 67/171 (39%), Gaps = 3/171 (1%)

Query: 72  LTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLV 131
           L   +G F+ G   G  SPA   L        ++ S    I S+ +LG   GS + G L 
Sbjct: 2   LLLFLGFFLSGLDRGLLSPA---LPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLS 58

Query: 132 DTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAET 191
           D  GR+  +LL  +   +G  L+ ++ S+ +   GR L G GGG+         AE    
Sbjct: 59  DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 192 EIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLLM 242
           + RG     F      G L    +G   +         L+      L+ L+
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL 169

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 23/177 (12%)

Query: 103 LVTESDLSFIGSSMA--------LGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI 154
           +VTE DL    +           +G + GS V G L D  GRK  +LL  + T V   L 
Sbjct: 115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLT 174

Query: 155 IWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGI----L 210
            +S +  +F   RLL G G G   V   +   E    + R  +GT  Q+  + G+    L
Sbjct: 175 AFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPL 234

Query: 211 FVYAVGSWASVYGLS----IICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQ 263
             Y +  W  +         +  LL  +FV      PESP++ + + R+++A + LQ
Sbjct: 235 VAYFIPDWRWLQLAVSLPTFLFFLL-SWFV------PESPRWLISQGRIEEALKILQ 284

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 37/198 (18%), Positives = 78/198 (39%), Gaps = 10/198 (5%)

Query: 76  IGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG 135
           +  F+ G       PA    +A +    ++ +++  + ++ +LG     P+ G L D  G
Sbjct: 3   LAAFLAGLGRSLLGPALPLYLAED--LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60

Query: 136 RKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRG 195
           R+  +L+  +   +G  L++++ S+ +    R+L G GGG+         A+    E RG
Sbjct: 61  RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERG 120

Query: 196 TLGTYFQLQCTAGIL-------FVYAVGSWASVYGLSIICALLPIFFVGLMLLMPESPQF 248
                       G          + ++  W + + +  I ALL    +  +LL    P+ 
Sbjct: 121 RALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALL-AAVLAALLLPRPPPES 179

Query: 249 HLKKNRVKQAKESLQWFR 266
              K   +     +  ++
Sbjct: 180 KRPKPAEEAPAPLVPAWK 197

Length = 346

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 58.8 bits (142), Expect = 1e-09
 Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 21/183 (11%)

Query: 95  LIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL-LAVPTLVGWGL 153
           L + E    + +S    +G  + LG + G+   G L D +GRK  +L+ L+V     +  
Sbjct: 190 LPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAF-F 248

Query: 154 IIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVY 213
             + Q    F   RLL+GFG G    +V  Y AE    E RG   ++  +    G ++  
Sbjct: 249 SSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAA 308

Query: 214 AVGSWASV--YGLS----------------IICALLPIFFVGLMLLMPESPQFHLKKNRV 255
           A+ +WA +  YG S                I+CA   +F +G +  MPESP+F L+  + 
Sbjct: 309 AM-AWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKH 367

Query: 256 KQA 258
            +A
Sbjct: 368 DEA 370

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 8/146 (5%)

Query: 102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP-TLVGWGLIIWSQSV 160
             ++ ++   + S   LG + G+ + G L D +GR+  +LL+ +    +G  L+  + S+
Sbjct: 206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL 265

Query: 161 IMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGT-LGTYFQLQCTAGILFVYAVG--- 216
            +     LL GFG G     +    +E+A  E RGT  G +       G L     G   
Sbjct: 266 ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL 325

Query: 217 ---SWASVYGLSIICALLPIFFVGLM 239
               +  V+ +    ALL    + L+
Sbjct: 326 DTGGYGGVFLILAALALLAALLLLLL 351

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 5/134 (3%)

Query: 117 ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGS 176
           ALG +  SP+ G L D  GRK  +L+     ++   +   S ++ +    R L GFG   
Sbjct: 8   ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAF 67

Query: 177 FAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYG-----LSIICALL 231
             V      A+I   E RG            G L    +G   + +         +  L 
Sbjct: 68  ALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILA 127

Query: 232 PIFFVGLMLLMPES 245
              F+ L  L+PE+
Sbjct: 128 LAAFILLAFLLPET 141

Length = 141

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 48/210 (22%), Positives = 81/210 (38%), Gaps = 15/210 (7%)

Query: 58  NQQKAKRITQYMAALTATIGGFIMG---TILGWTSPAGDRLIAGEYPFLVTESDLSFIGS 114
            +Q   R  Q+ A + + +   + G     +G+ +PA    I+ E  + +    L F+ S
Sbjct: 7   RKQPLSR-YQWRAIILSFLIMLMDGYDLAAMGFAAPA----ISAE--WGLDPVQLGFLFS 59

Query: 115 SMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGG 174
           +  +G  FG+   G L D +GR+  +L   +   V   L   + +V      R L G G 
Sbjct: 60  AGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGL 119

Query: 175 GSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-SVYG---LSIICAL 230
           G     +    +E A    RGT           G      +  W   V+G   L  +  +
Sbjct: 120 GGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGI 179

Query: 231 LPIFF-VGLMLLMPESPQFHLKKNRVKQAK 259
            P+   + LM  +PES  F + K      +
Sbjct: 180 APLLLLLLLMRFLPESIDFLVSKRPETVRR 209

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 37/171 (21%), Positives = 60/171 (35%), Gaps = 19/171 (11%)

Query: 102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNT----MLLLAVPTL-VGWGLIIW 156
           F ++E     + +   L         G L D  G +      MLLL +P L + + +   
Sbjct: 44  FGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP 103

Query: 157 SQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGT---------LGTYFQLQCTA 207
           S   ++     LL G  G SFAV +P   +     E +G          LG         
Sbjct: 104 STWQLLVIG--LLLGLAGASFAVGMPN-ASFFFPKEKQGLALGIAGAGNLGVAVAQLVAP 160

Query: 208 GILFVYAVGSWASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQA 258
            +   +   +W +V G+ ++   L I  V   L M + P+          A
Sbjct: 161 LVAVAFGFLAWRNVAGIYVV--ALAIAAVLAWLGMNDVPEHRASVKPQLPA 209

Length = 417

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 40/191 (20%), Positives = 64/191 (33%), Gaps = 18/191 (9%)

Query: 81  MGTILGWTSPAGDR-LIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLV-----DTV 134
               LGW   A D  L+A     +  E  L+ + ++  + A   S   G L+     D  
Sbjct: 15  SAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY 74

Query: 135 GRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIR 194
           GR+  M+   V    G     ++   I     RL+ G G G        Y  E     +R
Sbjct: 75  GRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLR 134

Query: 195 GTLGTYFQ--------LQCTAGILFVYAVG-SWASVYGLSIICALLPIFFVGLMLLMPES 245
                           +      L V   G  W +++ +SI+     IF + L   +PE+
Sbjct: 135 NKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISIL---PIIFALWLRKNIPEA 191

Query: 246 PQFHLKKNRVK 256
             +  K     
Sbjct: 192 EDWKEKHAGKA 202

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 9/125 (7%)

Query: 110 SFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW--SQSVIMFCAGR 167
           S +     + A+ G+P+   L    G+K T LL  +   +G  L+ +    S+ +F    
Sbjct: 260 SVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLV 319

Query: 168 LLTGFGGGSFAVVVPMYTAEIAE-----TEIRGTLGTYFQLQCTAGILFVYAVGSWASVY 222
           +L G G G   ++     A++ +     T  R   G  F L  +       A+G      
Sbjct: 320 VLAGIGLGLATLLPWAMLADVVDYGEWKTGKRRE-GITFSLY-SFADKLGGALGGAIVGL 377

Query: 223 GLSII 227
            L+  
Sbjct: 378 LLAFA 382

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 3/136 (2%)

Query: 104 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMF 163
           +T+ + +F+ ++  +G  FG  + G L D  GRK  M+   V   VG GL   +  VIM 
Sbjct: 50  LTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIML 109

Query: 164 CAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAG-ILFVYAVGSWASVY 222
              R + G G          Y  E     ++     +       G I+  Y + S+A  Y
Sbjct: 110 TLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY 169

Query: 223 GL--SIICALLPIFFV 236
           G   +    LLP+  V
Sbjct: 170 GWRAAFFVGLLPVLLV 185

Length = 426

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 11/137 (8%)

Query: 63  KRITQYMAALTATIGGFIMGT----ILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMAL 118
            R   ++A L   +  F +GT     +G   P     IA +    V+E     + ++ AL
Sbjct: 7   ARKPMWLALLALALAAFAIGTTEFVPVGLLPP-----IAAD--LGVSEGAAGQLITAYAL 59

Query: 119 GAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFA 178
           G   G+P++  L   + R+  +L L    +V   L   + S  +    R L G   G F 
Sbjct: 60  GVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFW 119

Query: 179 VVVPMYTAEIAETEIRG 195
            +     A +     RG
Sbjct: 120 SIAAALAARLVPPGKRG 136

Length = 394

>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator)

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 89  SPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNT----MLLLA 144
           SP   ++I  +     + + L  + +   L       ++G LVD  G + T    +LLLA
Sbjct: 21  SPLAVQMIKDDLGL--STAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLA 78

Query: 145 VPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPM 183
           +P L   GL + S SV      RL  G  GGSFA  +P 
Sbjct: 79  IPCL-WAGLAVQSYSV--LLLLRLFIGIAGGSFASCMPW 114

[Transport and binding proteins, Anions]. Length = 366

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	333
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.97
KOG0569|consensus	485		99.97
KOG0254|consensus	513		99.96
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.95
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.94
TIGR00898	505	2A0119 cation transport protein.	99.93
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.93
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.93
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.92
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.92
PRK10642	490	proline/glycine betaine transporter; Provisional	99.91
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.91
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.91
KOG0255|consensus	521		99.9
TIGR00891	405	2A0112 putative sialic acid transporter.	99.9
PRK11663	434	regulatory protein UhpC; Provisional	99.9
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.9
PRK03545	390	putative arabinose transporter; Provisional	99.89
PRK12307	426	putative sialic acid transporter; Provisional	99.89
TIGR00895	398	2A0115 benzoate transport.	99.89
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.89
KOG0253|consensus	528		99.88
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.88
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.88
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.88
KOG2532|consensus	466		99.88
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.88
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.88
TIGR00893	399	2A0114 d-galactonate transporter.	99.87
PRK09952	438	shikimate transporter; Provisional	99.87
KOG2533|consensus	495		99.86
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.86
KOG1330|consensus	493		99.86
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.86
PRK15075	434	citrate-proton symporter; Provisional	99.85
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.85
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.85
PRK10091	382	MFS transport protein AraJ; Provisional	99.85
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.85
PRK03699	394	putative transporter; Provisional	99.85
PRK09705	393	cynX putative cyanate transporter; Provisional	99.85
KOG0252|consensus	538		99.84
PLN00028	476	nitrate transmembrane transporter; Provisional	99.84
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.84
TIGR00900	365	2A0121 H+ Antiporter protein.	99.84
TIGR00805	633	oat sodium-independent organic anion transporter.	99.84
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.84
PRK03893	496	putative sialic acid transporter; Provisional	99.84
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.83
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.83
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.83
PRK11043	401	putative transporter; Provisional	99.83
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.83
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.83
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.83
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.82
PRK10133	438	L-fucose transporter; Provisional	99.82
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.81
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.81
PRK10504	471	putative transporter; Provisional	99.81
PRK03633	381	putative MFS family transporter protein; Provision	99.81
PRK10642	490	proline/glycine betaine transporter; Provisional	99.8
PRK05122	399	major facilitator superfamily transporter; Provisi	99.8
PRK12382	392	putative transporter; Provisional	99.79
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.79
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.79
PRK10054	395	putative transporter; Provisional	99.78
PRK09874	408	drug efflux system protein MdtG; Provisional	99.77
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.77
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.77
PRK10489	417	enterobactin exporter EntS; Provisional	99.77
PTZ00207	591	hypothetical protein; Provisional	99.77
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.76
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.76
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.75
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.75
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.73
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.71
PRK11010	491	ampG muropeptide transporter; Validated	99.71
KOG2615|consensus	451		99.71
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.7
PRK11902	402	ampG muropeptide transporter; Reviewed	99.7
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.7
KOG2504|consensus	509		99.67
KOG3764|consensus	464		99.67
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.66
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.66
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.66
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.66
TIGR00901	356	2A0125 AmpG-related permease.	99.65
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.65
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.63
PRK15011	393	sugar efflux transporter B; Provisional	99.62
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.6
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.6
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.6
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.6
PRK09528	420	lacY galactoside permease; Reviewed	99.58
PRK15011	393	sugar efflux transporter B; Provisional	99.56
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.55
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.54
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.53
PRK09528	420	lacY galactoside permease; Reviewed	99.53
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.53
PRK05122	399	major facilitator superfamily transporter; Provisi	99.52
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.52
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.52
PRK09952	438	shikimate transporter; Provisional	99.49
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.47
PRK12382	392	putative transporter; Provisional	99.47
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.46
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.45
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.45
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.44
PRK09874	408	drug efflux system protein MdtG; Provisional	99.44
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.44
KOG3626|consensus	735		99.43
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.43
TIGR00893	399	2A0114 d-galactonate transporter.	99.42
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.42
PRK10489	417	enterobactin exporter EntS; Provisional	99.42
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.41
KOG2325|consensus	488		99.41
PRK03633	381	putative MFS family transporter protein; Provision	99.41
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.4
KOG0569|consensus	485		99.4
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.4
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.39
PRK03699	394	putative transporter; Provisional	99.39
PRK03545	390	putative arabinose transporter; Provisional	99.38
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.38
TIGR00891	405	2A0112 putative sialic acid transporter.	99.38
TIGR00898	505	2A0119 cation transport protein.	99.37
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.36
TIGR00895	398	2A0115 benzoate transport.	99.36
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.35
PRK09669	444	putative symporter YagG; Provisional	99.35
PRK09705	393	cynX putative cyanate transporter; Provisional	99.35
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.34
PRK03893	496	putative sialic acid transporter; Provisional	99.33
PRK10504	471	putative transporter; Provisional	99.33
PRK12307	426	putative sialic acid transporter; Provisional	99.32
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.32
TIGR00900	365	2A0121 H+ Antiporter protein.	99.32
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.3
PLN00028	476	nitrate transmembrane transporter; Provisional	99.3
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.29
PRK11663	434	regulatory protein UhpC; Provisional	99.29
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.28
PRK15075	434	citrate-proton symporter; Provisional	99.27
PF13347	428	MFS_2: MFS/sugar transport protein	99.25
PRK11010	491	ampG muropeptide transporter; Validated	99.24
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.24
PRK10429	473	melibiose:sodium symporter; Provisional	99.23
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.23
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.22
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.21
KOG2563|consensus	480		99.2
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.19
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.19
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.19
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.18
KOG2504|consensus	509		99.18
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.18
PRK09848	448	glucuronide transporter; Provisional	99.17
KOG0253|consensus	528		99.17
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.16
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.16
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.16
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.15
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.15
TIGR00901	356	2A0125 AmpG-related permease.	99.14
PRK11462	460	putative transporter; Provisional	99.13
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.13
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.12
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.12
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.12
PRK10054	395	putative transporter; Provisional	99.11
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.11
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.11
PRK10091	382	MFS transport protein AraJ; Provisional	99.1
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.1
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.1
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.09
PF13347	428	MFS_2: MFS/sugar transport protein	99.09
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.09
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.08
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.08
PRK11902	402	ampG muropeptide transporter; Reviewed	99.07
PRK09848	448	glucuronide transporter; Provisional	99.06
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.05
PRK10429	473	melibiose:sodium symporter; Provisional	99.04
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.04
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.02
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.02
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.0
PRK09669	444	putative symporter YagG; Provisional	98.98
KOG4686|consensus	459		98.97
COG2211	467	MelB Na+/melibiose symporter and related transport	98.97
PRK10133	438	L-fucose transporter; Provisional	98.95
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.93
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.9
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.89
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.86
PRK11043	401	putative transporter; Provisional	98.85
KOG2532|consensus	466		98.85
COG2211	467	MelB Na+/melibiose symporter and related transport	98.84
KOG0252|consensus	538		98.84
COG0477	338	ProP Permeases of the major facilitator superfamil	98.82
KOG0254|consensus	513		98.82
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.79
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.79
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.76
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.74
PRK11462	460	putative transporter; Provisional	98.73
KOG4686|consensus	459		98.72
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.71
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.7
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.66
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.65
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.65
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.62
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.59
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.58
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.57
KOG3762|consensus	618		98.56
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.56
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.56
KOG3764|consensus	464		98.55
KOG2816|consensus	463		98.49
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.48
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.47
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.41
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.4
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.34
PF12832	77	MFS_1_like: MFS_1 like family	98.32
KOG0255|consensus	521		98.31
KOG2533|consensus	495		98.19
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.19
KOG0637|consensus	498		98.15
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.03
KOG2615|consensus	451		98.03
PTZ00207	591	hypothetical protein; Provisional	98.0
KOG2816|consensus	463		97.89
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.86
KOG3574|consensus	510		97.78
KOG3098|consensus	461		97.75
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.64
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.61
KOG4332|consensus	454		97.42
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.39
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.35
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.35
KOG3098|consensus	461		97.35
PRK03612	521	spermidine synthase; Provisional	97.28
KOG3810|consensus	433		97.27
KOG1237|consensus	571		97.21
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.11
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.09
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.05
KOG3762|consensus	618		96.83
COG3202	509	ATP/ADP translocase [Energy production and convers	96.83
KOG2563|consensus	480		96.82
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.31
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.18
KOG1330|consensus	493		95.98
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.81
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.47
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.44
KOG1479|consensus	406		95.24
TIGR00805	633	oat sodium-independent organic anion transporter.	95.23
KOG2325|consensus	488		94.21
KOG3097|consensus	390		92.72
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	92.35
KOG1479|consensus	406		92.1
KOG3880|consensus	409		91.04
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	88.94
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	88.32
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	87.94
KOG3626|consensus	735		85.93
KOG3810|consensus	433		85.88
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	85.2
KOG4332|consensus	454		83.94
COG1230	296	CzcD Co/Zn/Cd efflux system component [Inorganic i	82.56
COG4262	508	Predicted spermidine synthase with an N-terminal m	82.49
PF11947	153	DUF3464: Protein of unknown function (DUF3464); In	82.22
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	81.96
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	81.65

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.97  E-value=8.7e-30  Score=241.53  Aligned_cols=263  Identities=20%  Similarity=0.250  Sum_probs=215.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Q psy15539         65 ITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLA  144 (333)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  144 (333)
                      +..|..+++++++.+..+++...++..+|.+..+   ++++..+.+++.+++.+|.+++++++|+++||+|||+.+++++
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~---~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~l  239 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKD---LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICL  239 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            4566777777788888888888888889988888   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH-----
Q psy15539        145 VPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-----  219 (333)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-----  219 (333)
                      ++.+++.++++++++++.++++|++.|++.|+..+...++++|++|++.||..+++...++.+|.++++.++.++     
T Consensus       240 il~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G  319 (742)
T TIGR01299       240 SVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG  319 (742)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999888765332     


Q ss_pred             ------------HHHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCcc----hHHH--HHHHHH
Q psy15539        220 ------------SVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYD----IDSE--ITDMQN  281 (333)
Q Consensus       220 ------------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~  281 (333)
                                  +||+.+++.++++++.++..+++||+|+|+..+++.+++.+.+++++..+..    ....  .+.++.
T Consensus       320 ~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~  399 (742)
T TIGR01299       320 WSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKT  399 (742)
T ss_pred             chhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHH
Confidence                        5899998888887777777888999999999999999999999998764421    1111  111111


Q ss_pred             HHHh------hccC------------------ccchHhhhcChhhHHHHHHHHHHHHHHhhcchhhhhhchhccc
Q psy15539        282 SLEK------ERSD------------------KVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIF  332 (333)
Q Consensus       282 ~~~~------~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~  332 (333)
                      ....      +...                  ..++.++|+.+ +++++++++++|+... .+++++..|+|.++
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~-~~~~tl~l~~~wf~~~-~~yygl~~w~P~~~  472 (742)
T TIGR01299       400 IHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPE-VREITIKLMGVWFTLS-FGYYGLSVWFPDMI  472 (742)
T ss_pred             hhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCcc-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            0000      0000                  01356677766 8888888888887765 47788999999764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0569|consensus

Probab=99.97  E-value=6.1e-29  Score=222.54  Aligned_cols=268  Identities=32%  Similarity=0.482  Sum_probs=216.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhhccchhhhhhh---hcC--Ccccc--cCchh----HHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy15539         66 TQYMAALTATIGGFIMGTILGWTSPAGDRL---IAG--EYPFL--VTESD----LSFIGSSMALGAVFGSPVVGNLVDTV  134 (333)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~--~~~~~----~~~~~~~~~~~~~i~~~~~g~l~dr~  134 (333)
                      +.......+.++.+..|+..+.+++..+.+   .++  ...+|  .++++    .+.+.+.+.+|.++|+++.++++||+
T Consensus         8 ~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~   87 (485)
T KOG0569|consen    8 RLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRF   87 (485)
T ss_pred             HHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            445555666666688888888777653222   211  01244  34433    36678899999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHH
Q psy15539        135 GRKNTMLLLAVPTLVGWGLIIW---SQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILF  211 (333)
Q Consensus       135 Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~  211 (333)
                      |||..+.++.++..++.+++.+   .+++..++++|++.|+..|......+.|+.|..|++.||....+.+.+..+|.++
T Consensus        88 GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll  167 (485)
T KOG0569|consen   88 GRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILL  167 (485)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHH
Confidence            9999999998888888777665   4688999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHH------HHHHHHHHHHHHHHHHHHHhhcccCChHHHHh-cCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q psy15539        212 VYAVGSWA------SVYGLSIICALLPIFFVGLMLLMPESPQFHLK-KNRVKQAKESLQWFRGSEYDIDSEITDMQNSLE  284 (333)
Q Consensus       212 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (333)
                      +..++.--      .|.+.+.+.++++++..+..+++||||+|+.. +++.++|++.++++++.+++.++..++.++..+
T Consensus       168 ~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~  247 (485)
T KOG0569|consen  168 GQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEE  247 (485)
T ss_pred             HHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence            97775432      79999999999999988899999999999988 789999999999999876544333332222222


Q ss_pred             --hhccCccchHhhhcChhhHHHHHHHHHHHHHHhhcchhhhhhchhcccC
Q psy15539        285 --KERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK  333 (333)
Q Consensus       285 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~  333 (333)
                        .+++++.++++++++++.|+..++++.+.+.++++|++.+.+|++.+|+
T Consensus       248 ~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~  298 (485)
T KOG0569|consen  248 EELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFK  298 (485)
T ss_pred             hccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHH
Confidence              2223567899999999999999999999999999999999999998863

>KOG0254|consensus

Probab=99.96  E-value=1.6e-27  Score=221.69  Aligned_cols=267  Identities=34%  Similarity=0.502  Sum_probs=217.8

Q ss_pred             HHHHHHHHHHHHHhhhhhh--hccchhhhhhhhcCCcccccCc----hhHHHHHHHHHHHHHHHHHHHHHhhhccchhHH
Q psy15539         66 TQYMAALTATIGGFIMGTI--LGWTSPAGDRLIAGEYPFLVTE----SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNT  139 (333)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~  139 (333)
                      ......+...+..+..+++  .++..+....+.+.........    .+.+++.+.+.++..++++++|+++|++|||+.
T Consensus        42 ~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~  121 (513)
T KOG0254|consen   42 FVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKT  121 (513)
T ss_pred             ehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            3444555556666666665  4555555555554311112222    345899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        140 MLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       140 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      ++++.+++.++.+++++++|+..++++|++.|+|.|+...+.+.|++|+.|++.||...++.+....+|.+++..++...
T Consensus       122 l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~  201 (513)
T KOG0254|consen  122 LLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT  201 (513)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998877766


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhC-CCcchHHHHHHHHHHH-Hhh-c-cCc
Q psy15539        220 -----SVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRG-SEYDIDSEITDMQNSL-EKE-R-SDK  290 (333)
Q Consensus       220 -----~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~-~-~~~  290 (333)
                           +||..+.+..+.+++.++..+++||+|+|+.++++.+++++.+.++++ ++.+.+.+.++++... .+. . ..+
T Consensus       202 ~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (513)
T KOG0254|consen  202 SKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGK  281 (513)
T ss_pred             ccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhccccc
Confidence                 599999999999888777788999999999999999999999999998 4555566655554221 111 1 122


Q ss_pred             cchHhhhcChhhHHHHHHHHHHHHHHhhcchhhhhhchhcccC
Q psy15539        291 VPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK  333 (333)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~  333 (333)
                      ..+.++++ |..++++++++.+..+++++|++.+.+|.+.+|+
T Consensus       282 ~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~  323 (513)
T KOG0254|consen  282 ASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFK  323 (513)
T ss_pred             ccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHH
Confidence            24667777 5589999999999999999999999999999874

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.95  E-value=2.5e-26  Score=213.59  Aligned_cols=203  Identities=20%  Similarity=0.129  Sum_probs=169.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCC--cccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Q psy15539         65 ITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGE--YPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL  142 (333)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~  142 (333)
                      +.++..++++.++.+..+++...++...|.+..+.  .+.+.++.+.+++.+.+.++..++++++|+++||+|||+++.+
T Consensus        12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~   91 (502)
T TIGR00887        12 WQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM   91 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            45667777888888999999988888877665431  0134556677899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh------HHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHh
Q psy15539        143 LAVPTLVGWGLIIWSQS------VIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVG  216 (333)
Q Consensus       143 ~~~~~~~~~~~~~~~~~------~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~  216 (333)
                      +.++.+++.++++++.+      +..++++|++.|++.|+..+....+++|++|+++||+++++.+....+|.++++.++
T Consensus        92 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~  171 (502)
T TIGR00887        92 ELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVA  171 (502)
T ss_pred             HHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888765      778999999999999999999999999999999999999999999999888888775


Q ss_pred             HHH---------------------------HHHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCH-HHHHHHHHHHhC
Q psy15539        217 SWA---------------------------SVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRV-KQAKESLQWFRG  267 (333)
Q Consensus       217 ~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~  267 (333)
                      .++                           +||+.+.+.++++++.++..+++||+|+|+..+++. +++++.+.+.+.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~  250 (502)
T TIGR00887       172 LIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQ  250 (502)
T ss_pred             HHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhc
Confidence            432                           599999888888777777778899999999877765 446666666654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.94  E-value=2.3e-24  Score=199.58  Aligned_cols=261  Identities=26%  Similarity=0.389  Sum_probs=191.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCC-----cccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Q psy15539         66 TQYMAALTATIGGFIMGTILGWTSPAGDRLIAGE-----YPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM  140 (333)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l  140 (333)
                      .....+..+.++.+..+++..++++..|.+.+..     .+++.++.+.+++.+++.++.+++++++|+++||+|||+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~   88 (479)
T PRK10077          9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL   88 (479)
T ss_pred             HHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            3556667777788899999999888877776650     12388889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHH
Q psy15539        141 LLLAVPTLVGWGLIIWS------------QSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAG  208 (333)
Q Consensus       141 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g  208 (333)
                      +++.++.+++.+++++.            ..+..++++|++.|++.|+..+...++++|++|+++||+++++.+.+..+|
T Consensus        89 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G  168 (479)
T PRK10077         89 KIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFG  168 (479)
T ss_pred             HHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHH
Confidence            99999998888877653            235678899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHH------------HHHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCcchHHHH
Q psy15539        209 ILFVYAVGSWA------------SVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEI  276 (333)
Q Consensus       209 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (333)
                      .++++.++...            +||+.|++.++..++.++..+++||+|+++..+++.+++++..++.+... +.....
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~  247 (479)
T PRK10077        169 QLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNT-LATQAL  247 (479)
T ss_pred             HHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCCh-hHHHHH
Confidence            99887765422            79999998888777766667789999998877777777766666654322 222222


Q ss_pred             HHHHHHHHhhccCccchHhhhcChhhHHHHHHHHHHHHHHhhcchhhhhhchhccc
Q psy15539        277 TDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIF  332 (333)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~  332 (333)
                      ++.+...+++...   ....+.-  .....+..+....+.+..+++.+.+|.|+++
T Consensus       248 ~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~  298 (479)
T PRK10077        248 QEIKHSLDHGRKT---GGKLLMF--GVGVIVIGVMLSVFQQFVGINVVLYYAPEIF  298 (479)
T ss_pred             HHHHHHHHHhhhh---hhhhcch--hHHHHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence            2222211111111   1111111  1222333344455566667777777777653

>TIGR00898 2A0119 cation transport protein

Probab=99.93  E-value=2.6e-24  Score=200.43  Aligned_cols=223  Identities=22%  Similarity=0.339  Sum_probs=182.2

Q ss_pred             hhhhhhhcCCcccccC---chhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy15539         90 PAGDRLIAGEYPFLVT---ESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAG  166 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (333)
                      ...|.+.++   ++++   ..+.+++.+++.+|.+++++++|+++||+|||++++++.++.+++.++.+++++++.++++
T Consensus       110 ~~~~~i~~e---~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  186 (505)
T TIGR00898       110 TFSSTIVTE---WDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVF  186 (505)
T ss_pred             cccccEEEE---ecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            346777777   9998   8899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHhhcccCC
Q psy15539        167 RLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-SVYGLSIICALLPIFFVGLMLLMPES  245 (333)
Q Consensus       167 ~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~  245 (333)
                      |++.|++.++..+....++.|++|+++|+.+.++...+..+|.++++.++..+ +||+.+++.+++.++..+..+++||+
T Consensus       187 r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~es  266 (505)
T TIGR00898       187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPES  266 (505)
T ss_pred             HHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999988776 89999999988887777677889999


Q ss_pred             hHHHHhcCCHHHHHHHHHHHhCCCcc-hHHHHHHHH-HHHHhhccCccchHhhhcChhhHHHHHHHHHHHHH
Q psy15539        246 PQFHLKKNRVKQAKESLQWFRGSEYD-IDSEITDMQ-NSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFI  315 (333)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (333)
                      |+|+..+++.+++.+.+++..+.+.. ...+..+.. ++.+++++++.++++++++|..++.++...+.++.
T Consensus       267 p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  338 (505)
T TIGR00898       267 PRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFT  338 (505)
T ss_pred             hHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHH
Confidence            99999999988888888776542221 111111111 11111112245788999999777666655555544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.93  E-value=1.8e-24  Score=196.15  Aligned_cols=178  Identities=10%  Similarity=0.024  Sum_probs=158.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q psy15539         67 QYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP  146 (333)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  146 (333)
                      ++.....+++..+...++....+...|.+.++   +|++..+.+++.+++.+++.+++++.|+++||+|||+++..+.++
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~---~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~   82 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKD---LGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVL   82 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhh---cCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHH
Confidence            45556666666677778888888888888888   999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH-------
Q psy15539        147 TLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-------  219 (333)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-------  219 (333)
                      .++++++++++++++.+++.|++.|++.+...+....++.|++|+++|++++++++.+..+|..+++.+++++       
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  162 (412)
T TIGR02332        83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM  162 (412)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999999999999989999999999999999999999999999999887653       


Q ss_pred             ---HHHHHHHHHHHHHHHH-HHHhhcccCChH
Q psy15539        220 ---SVYGLSIICALLPIFF-VGLMLLMPESPQ  247 (333)
Q Consensus       220 ---~~~~~~~~~~~~~~~~-~~~~~~~~e~~~  247 (333)
                         +||+.|++.++++++. ++..+++||+|+
T Consensus       163 ~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       163 ALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence               7999999988877654 445567788874

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.93  E-value=7.2e-24  Score=195.60  Aligned_cols=267  Identities=30%  Similarity=0.427  Sum_probs=191.7

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccC--------chhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy15539         63 KRITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVT--------ESDLSFIGSSMALGAVFGSPVVGNLVDTV  134 (333)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~g~l~dr~  134 (333)
                      ..++.+...+.+.++.+..+++...+....|....+   ++.+        ..+.+++.+++.++..++++++|+++||+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~   98 (481)
T TIGR00879        22 TYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFE---FKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF   98 (481)
T ss_pred             ccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHH---HhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh
Confidence            344555556666666677777777777777766665   5555        78999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHH
Q psy15539        135 GRKNTMLLLAVPTLVGWGLIIWSQ---SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILF  211 (333)
Q Consensus       135 Grr~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~  211 (333)
                      |||++++++.++.+++.+++.+..   +++.++++|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+
T Consensus        99 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  178 (481)
T TIGR00879        99 GRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILV  178 (481)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHH
Confidence            999999999999999988886543   45589999999999999999999999999999999999999999999999999


Q ss_pred             HHHHh---HHH----HHHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCcchHHHHH---HHHH
Q psy15539        212 VYAVG---SWA----SVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEIT---DMQN  281 (333)
Q Consensus       212 ~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  281 (333)
                      ++.++   ...    +||+.|++.++..++.++..+++||+|++...+++.++..+...+....+++.....+   ..+.
T Consensus       179 ~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (481)
T TIGR00879       179 AYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDI  258 (481)
T ss_pred             HHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence            99998   332    8999999977777766667778899998776666666555555554433322211111   1111


Q ss_pred             HH-HhhccCccchHhhhcChh-hHHHHHHHHHHHHHHhhcchhhhhhchhccc
Q psy15539        282 SL-EKERSDKVPLMQAFSTPA-AKRGLLIGLGVMFIQQFGGINAVVFYTVKIF  332 (333)
Q Consensus       282 ~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~  332 (333)
                      .. .+.+..+..+.++++... ..++.++..++..+....+.+.+.+|.|+++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (481)
T TIGR00879       259 KRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIF  311 (481)
T ss_pred             HHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHH
Confidence            10 011111222344443221 2344555555555656666666777777654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.92  E-value=1.2e-28  Score=226.39  Aligned_cols=258  Identities=32%  Similarity=0.493  Sum_probs=204.9

Q ss_pred             HHHHhhhhhhhccchhhhhhhh--cCC--ccc----ccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q psy15539         75 TIGGFIMGTILGWTSPAGDRLI--AGE--YPF----LVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP  146 (333)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~----~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  146 (333)
                      .++.+..+++...++...+...  ...  ...    +.++...+++.+...+|..+|++++|+++||+|||+.+.++.++
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~   85 (451)
T PF00083_consen    6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL   85 (451)
T ss_pred             HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence            3445667777766655533332  110  001    11234578899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh---hHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----
Q psy15539        147 TLVGWGLIIWSQ---SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----  219 (333)
Q Consensus       147 ~~~~~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----  219 (333)
                      ..++.++.++++   +++.+.++|++.|++.|+..+....++.|..|++.|++..++.+.++.+|.+++..++...    
T Consensus        86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~  165 (451)
T PF00083_consen   86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS  165 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999   9999999999999999999999999999999999999999999999999988887775433    


Q ss_pred             H---HHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhccCccchHhh
Q psy15539        220 S---VYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQA  296 (333)
Q Consensus       220 ~---~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (333)
                      +   ||..+++.++++++.++..+++||||+|+..+++.+|+++.++++++.+. .+++.++..++.++.++.+.+++++
T Consensus       166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l  244 (451)
T PF00083_consen  166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEI-EDEEIEEIKAEKKESQESKASWRDL  244 (451)
T ss_pred             ccccccccccccccccccccccccccccccceeccccccccccccccccccccc-ccccccccccccccccccceeeeec
Confidence            4   99999998888887777778999999999999999999999998765422 2222222222222222233678899


Q ss_pred             hcChhhHHHHHHHHHHHHHHhhcchhhhhhchhcccC
Q psy15539        297 FSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK  333 (333)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~  333 (333)
                      ++++.+++++++.+.+..+.++++.+.+.+|.+.+++
T Consensus       245 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~  281 (451)
T PF00083_consen  245 FRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFE  281 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccc
Confidence            9998678888999999999999999999999988764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.92  E-value=2.4e-23  Score=181.37  Aligned_cols=175  Identities=20%  Similarity=0.242  Sum_probs=162.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q psy15539         66 TQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAV  145 (333)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  145 (333)
                      ..+..++.+.++.|..+.........+|++.++   +|.|..+.|++.++|.++..+++++...+.||+.||++++..+.
T Consensus        10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~d---l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~   86 (394)
T COG2814          10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAAD---LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLA   86 (394)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHhchHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence            346667788888888888888999999999999   99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HH
Q psy15539        146 PTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SV  221 (333)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~  221 (333)
                      ++.++++++++++|++.++++|++.|+..|..++...++..++.|+++|++++++...+..++.++|.+++.++    ||
T Consensus        87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GW  166 (394)
T COG2814          87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGW  166 (394)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988888776    99


Q ss_pred             HHHHHHHHHHHHHHHHH-hhccc
Q psy15539        222 YGLSIICALLPIFFVGL-MLLMP  243 (333)
Q Consensus       222 ~~~~~~~~~~~~~~~~~-~~~~~  243 (333)
                      |..|++.+.++++.++. +..+|
T Consensus       167 R~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         167 RATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999876554 44677

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.91  E-value=7.3e-23  Score=189.75  Aligned_cols=178  Identities=20%  Similarity=0.143  Sum_probs=145.8

Q ss_pred             HHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchh-HHH-----HHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Q psy15539         69 MAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESD-LSF-----IGSSMALGAVFGSPVVGNLVDTVGRKNTMLL  142 (333)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~  142 (333)
                      ..+..+.++.++.+++...++...|.+.++   ++.+.+. ..+     +.++.++++.++++++|+++||+|||+++.+
T Consensus        16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~   92 (490)
T PRK10642         16 KAITAASLGNAMEWFDFGVYGFVAYALGKV---FFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            345666778888999999988888888777   6543322 122     2477789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhHHH--------HHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHH
Q psy15539        143 LAVPTLVGWGLIIWSQSVIM--------FCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYA  214 (333)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~  214 (333)
                      +.++++++++++++++++..        ++++|+++|++.|+.++...++++|++|+++||++.++...+..+|..+++.
T Consensus        93 ~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~  172 (490)
T PRK10642         93 TIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAG  172 (490)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998764        7899999999999999999999999999999999999988887777777765


Q ss_pred             HhHH------------HHHHHHHHHHHHHHHHHHHHhhcccCChHHH
Q psy15539        215 VGSW------------ASVYGLSIICALLPIFFVGLMLLMPESPQFH  249 (333)
Q Consensus       215 ~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  249 (333)
                      +...            .+||+.|++.++++++.++....+||+|++.
T Consensus       173 ~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~  219 (490)
T PRK10642        173 VVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQ  219 (490)
T ss_pred             HHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHH
Confidence            4322            2799999997766665555566789998764

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.91  E-value=1e-22  Score=185.92  Aligned_cols=179  Identities=19%  Similarity=0.124  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccc---cCchhHHHH---HHHHHHHHHHHHHHHHHhhhccchhHH
Q psy15539         66 TQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFL---VTESDLSFI---GSSMALGAVFGSPVVGNLVDTVGRKNT  139 (333)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~i~~~~~g~l~dr~Grr~~  139 (333)
                      +++..+..+.++.+...++...++...|.+.++   ++   .+..+.+..   .+..+++..++++++|+++||+|||++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~   95 (432)
T PRK10406         19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHI---FFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS   95 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence            345556666777788888888888888888777   53   444444333   444555566999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHH--------HHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHH
Q psy15539        140 MLLLAVPTLVGWGLIIWSQSVI--------MFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILF  211 (333)
Q Consensus       140 l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~  211 (333)
                      +.++.++++++++++++++++.        .++++|+++|++.|+.++...++++|++|+++||++.++.+.+...|.++
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~  175 (432)
T PRK10406         96 MLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLL  175 (432)
T ss_pred             HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH
Confidence            9999999999999999887653        68899999999999999999999999999999999999888887777777


Q ss_pred             HHHHhHH------------HHHHHHHHHHHHHHHHHHHHhhcccCChH
Q psy15539        212 VYAVGSW------------ASVYGLSIICALLPIFFVGLMLLMPESPQ  247 (333)
Q Consensus       212 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  247 (333)
                      ++.+...            .+||+.|++.++++++.++.....||+++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~  223 (432)
T PRK10406        176 ALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQ  223 (432)
T ss_pred             HHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence            6655322            28999999888777665554455677653

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.91  E-value=2.1e-23  Score=179.77  Aligned_cols=182  Identities=17%  Similarity=0.110  Sum_probs=163.2

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Q psy15539         63 KRITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL  142 (333)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~  142 (333)
                      .++.++.+.+.+.+++....+..-..+...|.+.++   .++|.++.|++.+.+++++.++.++.|.++||.+.|+.+.+
T Consensus        23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~---~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~   99 (448)
T COG2271          23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIED---GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAF   99 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehH
Confidence            334455666667777777777777788889999998   88999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHh--HHH-
Q psy15539        143 LAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVG--SWA-  219 (333)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~--~~~-  219 (333)
                      ++++.++.+++++++++...+.++.++.|..+|.-.|.+...+..|+|+++||+..++++++-.+|+.+.|++.  +++ 
T Consensus       100 gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~  179 (448)
T COG2271         100 GLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA  179 (448)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888  555 


Q ss_pred             ---HHHHHHHHHHHHHHHH-HHHhhcccCChH
Q psy15539        220 ---SVYGLSIICALLPIFF-VGLMLLMPESPQ  247 (333)
Q Consensus       220 ---~~~~~~~~~~~~~~~~-~~~~~~~~e~~~  247 (333)
                         +||..|++.++++++. ++.++..+++|+
T Consensus       180 ~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq  211 (448)
T COG2271         180 FHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ  211 (448)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence               8999999999998874 555667788875

>KOG0255|consensus

Probab=99.90  E-value=1.2e-22  Score=189.79  Aligned_cols=213  Identities=24%  Similarity=0.228  Sum_probs=174.0

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhh
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVV  181 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~  181 (333)
                      +..+.....+..+++++|.++|.+++|+++||+|||++++++.++..++.++.++++|++.++++|++.|++.++.....
T Consensus       113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~  192 (521)
T KOG0255|consen  113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVG  192 (521)
T ss_pred             eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHh
Confidence            66677788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHH
Q psy15539        182 PMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA--SVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAK  259 (333)
Q Consensus       182 ~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  259 (333)
                      ..++.|++++++|+.+..+ ......++.+++.+++++  +||+.+++..++.++.++..++.||+|+|+..+++.+++.
T Consensus       193 ~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~  271 (521)
T KOG0255|consen  193 FGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAI  271 (521)
T ss_pred             HhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHH
Confidence            9999999999999999999 555555556666665555  8999999999998887777677779999999999999999


Q ss_pred             HHHHHHhCCC---cchHHHHHHH---HHHHHhhccCccchHhhhcChhhHHHHHHHHHHHHH
Q psy15539        260 ESLQWFRGSE---YDIDSEITDM---QNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFI  315 (333)
Q Consensus       260 ~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (333)
                      +.+++..+.+   .+..+...+.   +.......+++..+.++++.|..++.++..++.++.
T Consensus       272 ~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~  333 (521)
T KOG0255|consen  272 KILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFV  333 (521)
T ss_pred             HHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHH
Confidence            9998876432   2222222211   111111223446689999999777777777777754

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.90  E-value=2.7e-22  Score=181.48  Aligned_cols=182  Identities=20%  Similarity=0.153  Sum_probs=160.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Q psy15539         65 ITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLA  144 (333)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  144 (333)
                      ++++.....+.+..+..+++....+...|.+.++   +|.+..+.+++.+++.++..+++++.|+++||+|||++++++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~   84 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGE---FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSI   84 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            3456666777777778888888888889999888   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----H
Q psy15539        145 VPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----S  220 (333)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~  220 (333)
                      ++.+++++++.++++++.+++.|++.|++.+..++...+++.|++|+++|+++.++.+.+..+|..+++.++..+    +
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  164 (405)
T TIGR00891        85 VLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG  164 (405)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999887765    3


Q ss_pred             --HHHHHHHHHHHHHHHHHHhhcccCChHHH
Q psy15539        221 --VYGLSIICALLPIFFVGLMLLMPESPQFH  249 (333)
Q Consensus       221 --~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  249 (333)
                        |++.+++.++..++.++....+||++.+.
T Consensus       165 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~  195 (405)
T TIGR00891       165 DGWRALFFISILPIIFALWLRKNIPEAEDWK  195 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence              99999887666666555566778876543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.90  E-value=1.5e-22  Score=185.01  Aligned_cols=177  Identities=16%  Similarity=0.055  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q psy15539         69 MAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTL  148 (333)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~  148 (333)
                      .......+..+...++...++..+|.+.++   +|.+..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~   99 (434)
T PRK11663         23 HILITMYLGYALFYFTRKSFNAAMPEMLAD---LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG   99 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence            344444455555555555666778989888   99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHH
Q psy15539        149 VGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGL  224 (333)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~  224 (333)
                      ++++++.++++++.+++.|++.|++.|...+....++.|++|+++|++++++.+.+..+|..+++.+.+++    +||+.
T Consensus       100 ~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~  179 (434)
T PRK11663        100 IINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYG  179 (434)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence            99999999999999999999999999988899999999999999999999999999999999999887766    89999


Q ss_pred             HHHHHHHHHHH-HHHhhcccCChHH
Q psy15539        225 SIICALLPIFF-VGLMLLMPESPQF  248 (333)
Q Consensus       225 ~~~~~~~~~~~-~~~~~~~~e~~~~  248 (333)
                      |++.+++.++. ++..++++|+|.+
T Consensus       180 f~~~~i~~~~~~~~~~~~~~~~p~~  204 (434)
T PRK11663        180 MMIAGIIAIVVGLFLCWRLRDKPQA  204 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHhh
Confidence            99888776544 3444567887643

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.90  E-value=2e-22  Score=179.58  Aligned_cols=207  Identities=13%  Similarity=0.071  Sum_probs=155.3

Q ss_pred             cchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy15539         87 WTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAG  166 (333)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (333)
                      .+++.+|.+.++   +|+++.+.+++.+.+.+++.+++++.|+++||+|||+++..+.+....+.+.....+++..++++
T Consensus         9 ~~~~~lp~i~~~---~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   85 (368)
T TIGR00903         9 TFSPVLSLVAED---IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLAC   85 (368)
T ss_pred             HHHhhHHHHHHH---hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            455678889888   99999999999999999999999999999999999987765555554443333333789999999


Q ss_pred             HHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHH-HHHhhc
Q psy15539        167 RLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFF-VGLMLL  241 (333)
Q Consensus       167 ~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~  241 (333)
                      |++.|++.+. .......++|++|+++|++++++.+.+..+|.++++.++.++    +||+.|++.++++++. ++.+++
T Consensus        86 R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~  164 (368)
T TIGR00903        86 QLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAA  164 (368)
T ss_pred             HHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999986 455666679999999999999999999999999999998887    9999999988877664 445557


Q ss_pred             ccCChHHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhccCccchHhhhcChhhHHHHHHHHHHHHHHhhcch
Q psy15539        242 MPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGI  321 (333)
Q Consensus       242 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (333)
                      +||+|++..   +              ..+.+    +.          ..++++++++|..     +.+.+..++.....
T Consensus       165 lp~~p~~~~---~--------------~~~~~----~~----------~~~~~~ll~~~~~-----~~~~~~~~~~~~~~  208 (368)
T TIGR00903       165 LPALPFQAA---E--------------GFGFK----DA----------VKEFGALAGRKDL-----WIIGAILGFGVALF  208 (368)
T ss_pred             cCCCCCCCC---C--------------CcchH----HH----------HHHHHHHHcChhH-----HHHHHHHHHHHHHH
Confidence            898875310   0              00000    00          0135678888743     33333444455556


Q ss_pred             hhhhhchhcccC
Q psy15539        322 NAVVFYTVKIFK  333 (333)
Q Consensus       322 ~~~~~y~~~~~~  333 (333)
                      +.+..|+|.+++
T Consensus       209 ~~~~~wlp~~L~  220 (368)
T TIGR00903       209 DNLAIWLEAALR  220 (368)
T ss_pred             HHHHHHHHHHHH
Confidence            678889998863

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.89  E-value=7.4e-22  Score=178.04  Aligned_cols=176  Identities=12%  Similarity=0.093  Sum_probs=148.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q psy15539         67 QYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP  146 (333)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  146 (333)
                      +|..++.+.+..+..........+.+|.+.++   +|.+..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~---~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   83 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQS---FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVL   83 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHcchHHHHhH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            34444444454444444444445567888888   999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHH
Q psy15539        147 TLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVY  222 (333)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~  222 (333)
                      .+++++++.++++++.++++|++.|++.+...+...+++.|++|+++|++++++...+..+|..++|++++.+    +||
T Consensus        84 ~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~  163 (390)
T PRK03545         84 FIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWR  163 (390)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHH
Confidence            9999999999999999999999999999988899999999999999999999999999999999999888765    899


Q ss_pred             HHHHHHHHHHHHHHHH-hhcccCC
Q psy15539        223 GLSIICALLPIFFVGL-MLLMPES  245 (333)
Q Consensus       223 ~~~~~~~~~~~~~~~~-~~~~~e~  245 (333)
                      +.|++.++++++..+. ..++|+.
T Consensus       164 ~~f~~~~~~~~l~~~~~~~~~~~~  187 (390)
T PRK03545        164 TTFLAIGGGALITLLLLIKLLPLL  187 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999988877665433 3345654

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.89  E-value=9.8e-22  Score=179.29  Aligned_cols=177  Identities=20%  Similarity=0.207  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q psy15539         67 QYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP  146 (333)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  146 (333)
                      ++.....+.+..+..+++.....+.+|.+.++   +|.++.+.+++.+++.++..+++++.|+++||+|||+++.++.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~   92 (426)
T PRK12307         16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKAD---LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVA   92 (426)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            33445566666677777777778888988888   999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHH
Q psy15539        147 TLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVY  222 (333)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~  222 (333)
                      .++++++++++++++.++++|++.|++.+..++....++.|++|+++|+++.++...+..+|.++++.+...+    +||
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~  172 (426)
T PRK12307         93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWR  172 (426)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998887665    899


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCh
Q psy15539        223 GLSIICALLPIFFVGLMLLMPESP  246 (333)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~e~~  246 (333)
                      +.+++.++..++.+......||++
T Consensus       173 ~~f~i~~~~~~~~~~~~~~~p~~~  196 (426)
T PRK12307        173 AAFFVGLLPVLLVIYIRARAPESK  196 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCh
Confidence            998875544333332223345554

>TIGR00895 2A0115 benzoate transport

Probab=99.89  E-value=6.7e-22  Score=178.32  Aligned_cols=183  Identities=23%  Similarity=0.273  Sum_probs=154.8

Q ss_pred             HHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q psy15539         67 QYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP  146 (333)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  146 (333)
                      .+.....+.+..+..++.........|.+.++   +|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~   91 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAE---WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL   91 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence            34444555555556666666666778888888   999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHH
Q psy15539        147 TLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVY  222 (333)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~  222 (333)
                      .+++.+++.+.++++.+++.+++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.+++++    +|+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~  171 (398)
T TIGR00895        92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWR  171 (398)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccce
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988766    788


Q ss_pred             HHHHHHHHHHHH-HHHHhhcccCChHHHHhc
Q psy15539        223 GLSIICALLPIF-FVGLMLLMPESPQFHLKK  252 (333)
Q Consensus       223 ~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~  252 (333)
                      ..+++.+++.++ .++..+++||++++..++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (398)
T TIGR00895       172 SLFYVGGIAPLLLLLLLMRFLPESIDFLVSK  202 (398)
T ss_pred             eehhhhhhHHHHHHHHHHHhCCCCChHHHhc
Confidence            888887655544 444556788887654433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.89  E-value=2.2e-21  Score=174.90  Aligned_cols=176  Identities=13%  Similarity=0.127  Sum_probs=147.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q psy15539         67 QYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP  146 (333)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  146 (333)
                      .|...+.+.++.+..........+.+|.+.++   +|.++++.++..+++.++..+++++.|.++||+|||+++..+.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~   94 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQD---LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVL   94 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence            44444444444444444444445567888888   999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHH
Q psy15539        147 TLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVY  222 (333)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~  222 (333)
                      .+++.+++.++++++.++++|++.|++.+...+...+++.|++|+++|+++.++...+..+|..++|.+++++    +|+
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~  174 (394)
T PRK10213         95 LTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWR  174 (394)
T ss_pred             HHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998876    899


Q ss_pred             HHHHHHHHHHHHHHHHh-hcccCC
Q psy15539        223 GLSIICALLPIFFVGLM-LLMPES  245 (333)
Q Consensus       223 ~~~~~~~~~~~~~~~~~-~~~~e~  245 (333)
                      +.|++.++++++..+.. ...||+
T Consensus       175 ~~f~~~~~l~~~~~l~~~~~~p~~  198 (394)
T PRK10213        175 NVFNAAAVMGVLCIFWIIKSLPSL  198 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCC
Confidence            99988877666543333 245654

>KOG0253|consensus

Probab=99.88  E-value=1.7e-21  Score=164.42  Aligned_cols=253  Identities=21%  Similarity=0.144  Sum_probs=194.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q psy15539         66 TQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAV  145 (333)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  145 (333)
                      .++...+...+..+...+-.-..+-+.|.....   +|.+..+..++......|..+++..+|.++|++|||+.+.+..+
T Consensus        75 fq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~---w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l  151 (528)
T KOG0253|consen   75 FQWYLFFVAGMGWMADAMEMMLLSLILPALDEV---WGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL  151 (528)
T ss_pred             chhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhh---hchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence            344455555555554443333333445656666   88888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HH
Q psy15539        146 PTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SV  221 (333)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~  221 (333)
                      ...+..++.+.++|+..++++|.+.|+|.|+ .|...++-.|..|...|+..+-+. ..+.+|.++...++...    ||
T Consensus       152 ~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gw  229 (528)
T KOG0253|consen  152 VTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGW  229 (528)
T ss_pred             HHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhH
Confidence            9999999999999999999999999999999 888888999999999998877766 88888888887776544    99


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCcc----------hHHHHH----HHHHHH-Hhh
Q psy15539        222 YGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYD----------IDSEIT----DMQNSL-EKE  286 (333)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~----~~~~~~-~~~  286 (333)
                      ||.......+..+.+...+++||+|++...+++.+++.++++++...+..          ..++.+    .+++.. +..
T Consensus       230 r~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~  309 (528)
T KOG0253|consen  230 RYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAA  309 (528)
T ss_pred             HHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccc
Confidence            99998888887788888889999999999999999999999988643321          111111    111111 111


Q ss_pred             ccCccchHhhhcChhhHHHHHHHHHHHHHHhhcchhhhhhchhc
Q psy15539        287 RSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVK  330 (333)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~  330 (333)
                      ++...+..+++..+ .++++++.+..||.      +.+.||...
T Consensus       310 ke~rg~~~nLlsp~-lrkttlllw~iwfg------nafsyyg~V  346 (528)
T KOG0253|consen  310 KEVRGGTTNLLSPK-LRKTTLLLWRIWFG------NAFSYYGSV  346 (528)
T ss_pred             cccccchHhhcChH-HHHHHHHHHHHHHh------hHHHHHHHH
Confidence            23345567777654 99999999999998      456666544

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.88  E-value=3.1e-21  Score=179.06  Aligned_cols=178  Identities=14%  Similarity=0.039  Sum_probs=158.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q psy15539         66 TQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAV  145 (333)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  145 (333)
                      +++..+..+++..++...+.+.++..+|.+.++   +|.+..+.+|+.+.+.++..++.++.|+++||+|||++++++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~---l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~   79 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMT---LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGT   79 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            346677788888888889999999999999998   99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccC-CCcchhhHHHHHHHHHHHHHHHHHHHhHHH----H
Q psy15539        146 PTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIA-ETEIRGTLGTYFQLQCTAGILFVYAVGSWA----S  220 (333)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~-~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~  220 (333)
                      +.+++++++++++|++.++++|+++|++.+...+.....+.+.+ |+++|+++.++......+|..++|.+++++    +
T Consensus        80 ~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g  159 (495)
T PRK14995         80 LFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY  159 (495)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            99999999999999999999999999999988888777776665 779999999999999999999999999887    8


Q ss_pred             HHHHHHHHHHHHHHHH-HHhhcccCCh
Q psy15539        221 VYGLSIICALLPIFFV-GLMLLMPESP  246 (333)
Q Consensus       221 ~~~~~~~~~~~~~~~~-~~~~~~~e~~  246 (333)
                      ||+.|++...+.++.+ +..+++|+.+
T Consensus       160 wr~~f~i~~~~~~~~~~l~~~~l~~~~  186 (495)
T PRK14995        160 WGSVFLINVPIVLVVMGLTARYVPRQA  186 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999998877766543 3445677764

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.88  E-value=8e-22  Score=181.90  Aligned_cols=181  Identities=14%  Similarity=0.102  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhccchhhhhhhhcC-------------------CcccccCchhHHHHHHHHHHHHHHHHHHH
Q psy15539         67 QYMAALTATIGGFIMGTILGWTSPAGDRLIAG-------------------EYPFLVTESDLSFIGSSMALGAVFGSPVV  127 (333)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  127 (333)
                      ++....++.++......+....+...+.+.++                   .++++++..+.|++.+.+.+++.+++++.
T Consensus        17 r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~   96 (465)
T TIGR00894        17 RLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIPV   96 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcch
Confidence            44455555555544445555555555444431                   11488999999999999999999999999


Q ss_pred             HHhhhccchhHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHH
Q psy15539        128 GNLVDTVGRKNTMLLLAVPTLVGWGLIIWS--QSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQC  205 (333)
Q Consensus       128 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~  205 (333)
                      |+++||+|||+++.++.++++++.+++.++  .++..+++.|++.|++.+...+....++.|++|+++|+++.++...+.
T Consensus        97 g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  176 (465)
T TIGR00894        97 GYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGF  176 (465)
T ss_pred             HHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999988887554  457789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHhh-cccCChH
Q psy15539        206 TAGILFVYAVGSWA-----SVYGLSIICALLPIFFVGLML-LMPESPQ  247 (333)
Q Consensus       206 ~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~e~~~  247 (333)
                      .+|.++++++.+++     +|++.|++.+++.++..+.++ +.+|+|+
T Consensus       177 ~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~  224 (465)
T TIGR00894       177 QLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPS  224 (465)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcc
Confidence            99999999987765     689899998888776555444 4566653

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.88  E-value=3.8e-21  Score=174.29  Aligned_cols=180  Identities=21%  Similarity=0.206  Sum_probs=159.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q psy15539         66 TQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAV  145 (333)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  145 (333)
                      ++|....++.+..+..+++....+...|.+.++   +|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   88 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQE---FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA   88 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence            567777778888888888888888888999888   99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HH
Q psy15539        146 PTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SV  221 (333)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~  221 (333)
                      +.+++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+    +|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  168 (406)
T PRK11551         89 LFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAW  168 (406)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887665    79


Q ss_pred             HHHHHHHHHHHHHHH-HHhhcccCChHH
Q psy15539        222 YGLSIICALLPIFFV-GLMLLMPESPQF  248 (333)
Q Consensus       222 ~~~~~~~~~~~~~~~-~~~~~~~e~~~~  248 (333)
                      ++.+++.+++.++.. +..+++||+|++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~  196 (406)
T PRK11551        169 RHIFYVGGVGPLLLVPLLMRWLPESRAF  196 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChhH
Confidence            998888776655543 344567887654

>KOG2532|consensus

Probab=99.88  E-value=1.1e-21  Score=177.73  Aligned_cols=209  Identities=15%  Similarity=0.221  Sum_probs=172.4

Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhhhhhhhh
Q psy15539        101 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ--SVIMFCAGRLLTGFGGGSFA  178 (333)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~~  178 (333)
                      +++++..+.+++.+.++.|+++++++.|+++||+|-|+++..+.++.++++++..++.  +++.+++.|+++|++.|..+
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~  146 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLF  146 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHH
Confidence            4889999999999999999999999999999999999999999999999999988765  44577899999999999999


Q ss_pred             hhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHhh-cccCChHHHHhc
Q psy15539        179 VVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-----SVYGLSIICALLPIFFVGLML-LMPESPQFHLKK  252 (333)
Q Consensus       179 ~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~  252 (333)
                      |....+.+.|.|+++|++..++...+..+|.+++.++++++     ||+.+|++.++++++..++++ +..|+|... +.
T Consensus       147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h-~~  225 (466)
T KOG2532|consen  147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH-PN  225 (466)
T ss_pred             hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccC-CC
Confidence            99999999999999999999999999999999999988877     899999999999988665554 556676431 11


Q ss_pred             CCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhc---cCccchHhhhcChhhHHHHHHHHHHHHHHhhcchhhhhhchh
Q psy15539        253 NRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKER---SDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTV  329 (333)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~  329 (333)
                      -.                  ++|.+.++.+..++.   +.+.+++++++++.     ++++++..++...+...+..|+|
T Consensus       226 is------------------~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~-----vwai~~~~f~~~~~~~~l~~y~P  282 (466)
T KOG2532|consen  226 IS------------------EKELKYIEKGKSEAHVKKKPPVPYKAILTSPP-----VWAIWISAFGGNWGFYLLLTYLP  282 (466)
T ss_pred             CC------------------HHHHHHHHhcccccccCCCCCCCHHHHHcCHH-----HHHHHHHHHHHHHHHHHHHHHhh
Confidence            11                  222222222211111   13668999999985     66777777888888899999999


Q ss_pred             cccC
Q psy15539        330 KIFK  333 (333)
Q Consensus       330 ~~~~  333 (333)
                      .|++
T Consensus       283 tY~~  286 (466)
T KOG2532|consen  283 TYLK  286 (466)
T ss_pred             HHHH
Confidence            9874

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.88  E-value=3.1e-21  Score=175.01  Aligned_cols=170  Identities=16%  Similarity=0.074  Sum_probs=147.8

Q ss_pred             HHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q psy15539         74 ATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGL  153 (333)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~  153 (333)
                      +.+..+........+.+.+|.+.++   ++.+..+.++..+++.+++++++++.|+++||+|||++++.+.++.++++++
T Consensus        21 ~~~~~~~~~~~~~~~~p~l~~i~~~---~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~   97 (413)
T PRK15403         21 LILYDFAAYLTTDLIQPGIINVVRD---FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAA   97 (413)
T ss_pred             HHHHHHHHHHHHHhhccCHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHH
Confidence            3444455556667777888888888   9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHH
Q psy15539        154 IIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICA  229 (333)
Q Consensus       154 ~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~  229 (333)
                      +.++++++.++++|++.|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++.+    +|++.|++.+
T Consensus        98 ~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~  177 (413)
T PRK15403         98 TLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIA  177 (413)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            999999999999999999998877777788899999999999999999999999999999888765    8999999988


Q ss_pred             HHHHHHHHH-hhcccCCh
Q psy15539        230 LLPIFFVGL-MLLMPESP  246 (333)
Q Consensus       230 ~~~~~~~~~-~~~~~e~~  246 (333)
                      ++.++..+. .+++||++
T Consensus       178 ~~~~i~~~~~~~~lp~~~  195 (413)
T PRK15403        178 VMGLIAFVGLLLAMPETV  195 (413)
T ss_pred             HHHHHHHHHHHHhCCCCc
Confidence            877765543 44578764

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.88  E-value=5.2e-22  Score=183.09  Aligned_cols=177  Identities=18%  Similarity=0.174  Sum_probs=146.6

Q ss_pred             HHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q psy15539         68 YMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPT  147 (333)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  147 (333)
                      +.....+.+..+....+...++...|.+.++   +|++..+.|++.+++.+++.+++++.|+++||+|||+++.++.+++
T Consensus        28 ~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~---~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~  104 (467)
T PRK09556         28 MQSYLVVFIGYLTMYLIRKNFKAAQNDMIST---YGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILS  104 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhcChhhhhHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHH
Confidence            3344455555555566777788888999988   9999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHH-----HhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH---
Q psy15539        148 LVGWGLIIW-----SQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA---  219 (333)
Q Consensus       148 ~~~~~~~~~-----~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~---  219 (333)
                      ++++++.++     +++++.++++|++.|++.+...+....+++|++|+++||+++++++.+..+|.++++.+..+.   
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~  184 (467)
T PRK09556        105 AICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY  184 (467)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence            877776665     579999999999999999999999999999999999999999999999999999988876543   


Q ss_pred             ----HHHHHHHHHHHHHHHHH-HHhhcccCChH
Q psy15539        220 ----SVYGLSIICALLPIFFV-GLMLLMPESPQ  247 (333)
Q Consensus       220 ----~~~~~~~~~~~~~~~~~-~~~~~~~e~~~  247 (333)
                          +|+..+.+.+++.++.. +.+++.+++|+
T Consensus       185 ~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~  217 (467)
T PRK09556        185 FFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPE  217 (467)
T ss_pred             hccCcchhHHHHHHHHHHHHHHHHHHhCCCChh
Confidence                47777777777766543 33445566654

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.87  E-value=2.2e-21  Score=174.52  Aligned_cols=161  Identities=21%  Similarity=0.191  Sum_probs=142.8

Q ss_pred             hhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy15539         83 TILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIM  162 (333)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  162 (333)
                      .+...++...|.+.++   +|.+..+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.++++++++++.
T Consensus         8 ~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~   84 (399)
T TIGR00893         8 LDRANLSFAAPMLQED---LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVS   84 (399)
T ss_pred             HHHHhhhHhHHHHHHh---hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHH
Confidence            3445556667778887   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHH
Q psy15539        163 FCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGL  238 (333)
Q Consensus       163 ~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  238 (333)
                      ++++|++.|++.+...+....++.|++|+++|+++.++.+....+|.++++.+++++    +|++.+++.+++.++..+.
T Consensus        85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  164 (399)
T TIGR00893        85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVL  164 (399)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998865    8999999888777665443


Q ss_pred             -hhcccCCh
Q psy15539        239 -MLLMPESP  246 (333)
Q Consensus       239 -~~~~~e~~  246 (333)
                       .++.||+|
T Consensus       165 ~~~~~~~~~  173 (399)
T TIGR00893       165 WLKFIPDPP  173 (399)
T ss_pred             hhheecCCC
Confidence             34556654

>PRK09952 shikimate transporter; Provisional

Probab=99.87  E-value=1.9e-20  Score=171.24  Aligned_cols=178  Identities=19%  Similarity=0.128  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHHhhhhhhhccchhhhhhhhcCCccc--ccCchhHHHHH-----HHHHHHHHHHHHHHHHhhhccchhHHH
Q psy15539         68 YMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPF--LVTESDLSFIG-----SSMALGAVFGSPVVGNLVDTVGRKNTM  140 (333)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~i~~~~~g~l~dr~Grr~~l  140 (333)
                      +.......++.+..+++...++...|.+..+  ++  +.++. .+++.     ++.+++..+++++.|+++||+|||+++
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         21 RRAALGSFAGAVVDWYDFLLYGITAALVFNR--EFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            3456666677778888888777766544332  03  45554 44443     345566789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhHH--------HHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHH
Q psy15539        141 LLLAVPTLVGWGLIIWSQSVI--------MFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFV  212 (333)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~  212 (333)
                      .++.++++++++++++++++.        .++++|+++|++.|+.++....++.|++|+++|++..+..+.+..+|.+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~  177 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS  177 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999998876        588899999999999999999999999999999999999999999998888


Q ss_pred             HHHhHH------------HHHHHHHHHHHHHHHHHHHHhhcccCChHH
Q psy15539        213 YAVGSW------------ASVYGLSIICALLPIFFVGLMLLMPESPQF  248 (333)
Q Consensus       213 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  248 (333)
                      ..+..+            .+||+.|++.+++.++........||+|++
T Consensus       178 ~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~  225 (438)
T PRK09952        178 TGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEF  225 (438)
T ss_pred             HHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhH
Confidence            665432            379999998877765544444467787754

>KOG2533|consensus

Probab=99.86  E-value=1.1e-20  Score=171.77  Aligned_cols=215  Identities=13%  Similarity=0.051  Sum_probs=166.1

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhh
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVV  181 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~  181 (333)
                      .+....+.+.+.++++++++++.++++.+.||++-.+.+....+++++..++.....|++.+++.|++.|+.+++.+|..
T Consensus        76 l~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~  155 (495)
T KOG2533|consen   76 LKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGV  155 (495)
T ss_pred             cchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHH
Confidence            88888999999999999999999999999999999999999999998888888889999999999999999999999999


Q ss_pred             hhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHHHH-HHHhhcccCChHHHH
Q psy15539        182 PMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----------SVYGLSIICALLPIFF-VGLMLLMPESPQFHL  250 (333)
Q Consensus       182 ~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~  250 (333)
                      ..+++.|+.+++||+.++++.+...+|++++.+++..+          +||+.|++.+++.++. +++++++|+.|....
T Consensus       156 ~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~  235 (495)
T KOG2533|consen  156 VAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAW  235 (495)
T ss_pred             HHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhcc
Confidence            99999999999999999999999999999999998772          9999999999998874 566678999986320


Q ss_pred             hcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhccCccchHhhhcChhhHHHHHHHHHHHHHHhhcchhhhhhchhc
Q psy15539        251 KKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVK  330 (333)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~  330 (333)
                       -...+|..-..++.+..+           .....++.+..++++.+++|..|.     .++..++.....+.+.+|+|.
T Consensus       236 -fl~~~ek~~~~~~~~~~~-----------~~~~~~~~~~~~~~~a~~dp~vw~-----~~l~~~~~~lv~~~~~~~lpl  298 (495)
T KOG2533|consen  236 -FLTDEEKELVVERLRESP-----------SGGIENKFKWKGFKEALKDPGVWP-----FSLCYFFLKLVNYGFSYWLPL  298 (495)
T ss_pred             -ccchHHHHHHHHHHHhcc-----------CCCcccccCHHHHHHHHhchhHHH-----HHHHHHHHhhccccHHHHHHH
Confidence             111111111111111000           000111135567889999995333     333344444455778899988


Q ss_pred             ccC
Q psy15539        331 IFK  333 (333)
Q Consensus       331 ~~~  333 (333)
                      +++
T Consensus       299 ~l~  301 (495)
T KOG2533|consen  299 YLK  301 (495)
T ss_pred             HHH
Confidence            763

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.86  E-value=2.4e-20  Score=171.27  Aligned_cols=173  Identities=13%  Similarity=0.010  Sum_probs=135.2

Q ss_pred             HHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q psy15539         72 LTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGW  151 (333)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  151 (333)
                      ..+.+.......+....+..+|.+. +   .|++..+.+++.+.+.+++.+++++.|+++||+|||++++++.++.+++.
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~p~l~-~---~g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~  107 (452)
T PRK11273         32 LGIFFGYAAYYLVRKNFALAMPYLV-E---QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM  107 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHH-H---cCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHH
Confidence            3333333333333333445566554 4   38899999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHh----hHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHH-HHHHHhHHH----HHH
Q psy15539        152 GLIIWSQ----SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGIL-FVYAVGSWA----SVY  222 (333)
Q Consensus       152 ~~~~~~~----~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~-~~~~~~~~~----~~~  222 (333)
                      +++++.+    +++.+++.|++.|++.+..++.....+.|++|+++|++++++++.+..+|.. .+++++...    +|+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~  187 (452)
T PRK11273        108 LFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWH  187 (452)
T ss_pred             HHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHH
Confidence            8887753    6778899999999999988888888899999999999999999999888864 445433222    899


Q ss_pred             HHHHHHHHHHHHH-HHHhhcccCChHH
Q psy15539        223 GLSIICALLPIFF-VGLMLLMPESPQF  248 (333)
Q Consensus       223 ~~~~~~~~~~~~~-~~~~~~~~e~~~~  248 (333)
                      +.|++.+++.++. ++..+++||+|+.
T Consensus       188 ~~f~i~~~~~~~~~~l~~~~~~~~~~~  214 (452)
T PRK11273        188 AALYMPAFAAILVALFAFAMMRDTPQS  214 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCHhh
Confidence            9999888776654 4555677887653

>KOG1330|consensus

Probab=99.86  E-value=6.9e-23  Score=178.23  Aligned_cols=177  Identities=16%  Similarity=0.119  Sum_probs=158.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q psy15539         67 QYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP  146 (333)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  146 (333)
                      .+..+.+.++.+.+...+.+.+....+...+.   +|++++..|++.+.+.+.+++++|++|+++||+.||+++.+|.++
T Consensus        31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~---fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i  107 (493)
T KOG1330|consen   31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQTY---FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI  107 (493)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhhhHHHHHh---cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence            34556666777777778888877777777777   999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH-----HH
Q psy15539        147 TLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-----SV  221 (333)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-----~~  221 (333)
                      ++++.++++++..+|++.++|.+.|+|.+...++.+++++|.+|..+|++++++++.+..+|..+|.+.+..+     .|
T Consensus       108 W~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W  187 (493)
T KOG1330|consen  108 WTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW  187 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence            9999999999999999999999999999999999999999999999999999999999999999888887766     59


Q ss_pred             HHHHHHHHHHHHHHH-HHhhcccCCh
Q psy15539        222 YGLSIICALLPIFFV-GLMLLMPESP  246 (333)
Q Consensus       222 ~~~~~~~~~~~~~~~-~~~~~~~e~~  246 (333)
                      |+.|+..+++.++.. +.+++.+|+.
T Consensus       188 r~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  188 RWAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             EEEEEeehHHHHHHHHHHHhhccCcc
Confidence            999999999998754 4455666664

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.86  E-value=1.3e-20  Score=169.42  Aligned_cols=165  Identities=17%  Similarity=0.155  Sum_probs=144.7

Q ss_pred             hhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh
Q psy15539         79 FIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ  158 (333)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~  158 (333)
                      +..........+.+|.+.++   +|.++.+.+++.+++.++..+++++.|+++||+|||+.+..+.++.+++.+++.+.+
T Consensus        15 ~~~~~~~~~~~~~~p~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~   91 (385)
T TIGR00710        15 ILGPLGIDMYLPAFPEIAAD---LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN   91 (385)
T ss_pred             HHHHHHHHHhcccHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence            34445556667778888888   999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHH
Q psy15539        159 SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIF  234 (333)
Q Consensus       159 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~  234 (333)
                      +++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++.+++++    +|++.+++.+++.++
T Consensus        92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~  171 (385)
T TIGR00710        92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGIL  171 (385)
T ss_pred             cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999888766    799988887777665


Q ss_pred             HHHH-hhcccCCh
Q psy15539        235 FVGL-MLLMPESP  246 (333)
Q Consensus       235 ~~~~-~~~~~e~~  246 (333)
                      ..+. .++.||++
T Consensus       172 ~~~~~~~~~~~~~  184 (385)
T TIGR00710       172 LSALIFFILPETL  184 (385)
T ss_pred             HHHHHHHhCCCCC
Confidence            4433 44566653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.85  E-value=4.1e-20  Score=168.93  Aligned_cols=160  Identities=22%  Similarity=0.243  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHH-HHH-----HHHHHHHHHHHHHhhhccchhHHHHH
Q psy15539         69 MAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIG-SSM-----ALGAVFGSPVVGNLVDTVGRKNTMLL  142 (333)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~i~~~~~g~l~dr~Grr~~l~~  142 (333)
                      .....+.++.+...++...++...|.+.++   ++.++.+.+.+. +..     .++..+++++.|+++||+|||+.++.
T Consensus        15 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~   91 (434)
T PRK15075         15 RAILRVTSGNFLEMFDFFLFGFYATAIAKT---FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIV   91 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHH
Confidence            356777778888999999999999999998   888777654432 222     23335789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhHH--------HHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHH
Q psy15539        143 LAVPTLVGWGLIIWSQSVI--------MFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYA  214 (333)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~  214 (333)
                      +.++.++++++++++++++        .++++|++.|++.+...+....+++|++|+++|++++++...+..+|..+++.
T Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~  171 (434)
T PRK15075         92 TLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAAL  171 (434)
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998876        46889999999999999888999999999999999999988777777666666


Q ss_pred             HhHH------------HHHHHHHHHHHHH
Q psy15539        215 VGSW------------ASVYGLSIICALL  231 (333)
Q Consensus       215 ~~~~------------~~~~~~~~~~~~~  231 (333)
                      ++..            .+||+.|++..+.
T Consensus       172 ~g~~l~~~~~~~~~~~~gWr~~f~~~~~~  200 (434)
T PRK15075        172 LGYLLNQWLSPAQMAEWGWRIPFLIGCLI  200 (434)
T ss_pred             HHHHHHHhCCHHHHhccchHHHHHHHHHH
Confidence            5543            2899999875443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.85  E-value=1.2e-20  Score=167.40  Aligned_cols=167  Identities=23%  Similarity=0.326  Sum_probs=141.4

Q ss_pred             HHhhhhhhhccchhhhh-hhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q psy15539         77 GGFIMGTILGWTSPAGD-RLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII  155 (333)
Q Consensus        77 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~  155 (333)
                      ..+..........+.+| .+.++   +|.+..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    4 AFFLSGFGFSIISPALPLYLAEE---LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHCC---STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh
Confidence            33444455555666777 67777   999999999999999999999999999999999999999999999999966666


Q ss_pred             HHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHH
Q psy15539        156 WSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALL  231 (333)
Q Consensus       156 ~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~  231 (333)
                      ++++.+.++++|++.|++.+...+....++.|++|+++|+++.++.+.+..+|.++++.+++++    +|++.+++.+++
T Consensus        81 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~  160 (352)
T PF07690_consen   81 FASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAIL  160 (352)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHH
T ss_pred             hhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccch
Confidence            6677779999999999999999999999999999999999999999999999999999998877    899999999888


Q ss_pred             HHHHHHH-hhcccCCh
Q psy15539        232 PIFFVGL-MLLMPESP  246 (333)
Q Consensus       232 ~~~~~~~-~~~~~e~~  246 (333)
                      .++..+. .+++++++
T Consensus       161 ~~~~~il~~~~~~~~~  176 (352)
T PF07690_consen  161 SLIAAILFILFLPEPP  176 (352)
T ss_dssp             HHHHHHHHHCCC---S
T ss_pred             hhhhhhhHhhhhhhcc
Confidence            8876553 34555443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.85  E-value=5.6e-20  Score=163.14  Aligned_cols=159  Identities=16%  Similarity=0.107  Sum_probs=139.8

Q ss_pred             hccchhhhhhhhcCCcccccCchh-HHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy15539         85 LGWTSPAGDRLIAGEYPFLVTESD-LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMF  163 (333)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~  163 (333)
                      ........|.+.++   +|++..+ .|.+.++++.+++++.++.|+++||+|.|+++.++.+.+++.+++.+++.++..+
T Consensus        42 R~n~s~a~p~L~~e---lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L  118 (511)
T TIGR00806        42 RPGESFITPYLLTV---LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHM  118 (511)
T ss_pred             hchHHHHHHHHHHH---cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555567778777   9999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH---HHHHHH---HHHHHHHHHHHH
Q psy15539        164 CAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA---SVYGLS---IICALLPIFFVG  237 (333)
Q Consensus       164 ~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~  237 (333)
                      .+.|++.|++.|... ....++..++|+++|+++.++...+..+|.+++++++.++   +|+...   ++......++++
T Consensus       119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~  197 (511)
T TIGR00806       119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVF  197 (511)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence            999999999999999 9999999999999999999999999999999999998877   666533   344444455666


Q ss_pred             HhhcccCChH
Q psy15539        238 LMLLMPESPQ  247 (333)
Q Consensus       238 ~~~~~~e~~~  247 (333)
                      ..+++|..++
T Consensus       198 ~a~~LP~~~~  207 (511)
T TIGR00806       198 LALFLKRPKR  207 (511)
T ss_pred             HHHhCCCCch
Confidence            7778886554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.85  E-value=4.4e-20  Score=165.98  Aligned_cols=171  Identities=20%  Similarity=0.263  Sum_probs=148.7

Q ss_pred             HHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q psy15539         72 LTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGW  151 (333)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  151 (333)
                      ....+..+..+.......+.+|.+.++   +|.+..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   82 (382)
T PRK10091          6 LSLALGTFGLGMAEFGIMGVLTELAHD---VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN   82 (382)
T ss_pred             HHHHHHHHHHHhhHHHHHhChHHHHHH---cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence            334445555666666777788989888   99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHH
Q psy15539        152 GLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSII  227 (333)
Q Consensus       152 ~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~  227 (333)
                      ++++++++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++++    +||+.|++
T Consensus        83 ~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~  162 (382)
T PRK10091         83 AMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL  162 (382)
T ss_pred             HHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence            99999999999999999999999988888888999999999999999999999999999998887766    89999999


Q ss_pred             HHHHHHHHHH-HhhcccCC
Q psy15539        228 CALLPIFFVG-LMLLMPES  245 (333)
Q Consensus       228 ~~~~~~~~~~-~~~~~~e~  245 (333)
                      .+++.++..+ ..+++||.
T Consensus       163 ~~~~~~~~~~~~~~~lp~~  181 (382)
T PRK10091        163 IAVFNIAVLASIYFWVPDI  181 (382)
T ss_pred             HHHHHHHHHHHHHHhCCCC
Confidence            8887665443 34456765

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.85  E-value=5.2e-20  Score=170.70  Aligned_cols=173  Identities=17%  Similarity=0.228  Sum_probs=153.0

Q ss_pred             HHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q psy15539         71 ALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVG  150 (333)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~  150 (333)
                      ...+.++.+...++....+..+|.+.++   +|.+..+.+++.+.+.++..++.++.|+++||+|||+.++++.++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   80 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIPTIAGD---LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            3445556666777777888889999998   9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHH
Q psy15539        151 WGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSI  226 (333)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~  226 (333)
                      .+++++++++..++++|++.|++.+...+...+++.|++|+++|+++.+++..+..+|..++|.+++++    +|++.|+
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~  160 (485)
T TIGR00711        81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFL  160 (485)
T ss_pred             HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhh
Confidence            999999999999999999999999999999999999999999999999999999999999999998877    8999998


Q ss_pred             HHHHHHHHHHH-HhhcccCCh
Q psy15539        227 ICALLPIFFVG-LMLLMPESP  246 (333)
Q Consensus       227 ~~~~~~~~~~~-~~~~~~e~~  246 (333)
                      +.+.++++..+ ..+++||++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~  181 (485)
T TIGR00711       161 INVPIGIIVVVVAFFILPRDK  181 (485)
T ss_pred             hhhHHHHHHHHHHHHHcCCcc
Confidence            88777665443 344566643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03699 putative transporter; Provisional

Probab=99.85  E-value=7.5e-20  Score=165.17  Aligned_cols=169  Identities=11%  Similarity=0.097  Sum_probs=146.6

Q ss_pred             HHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q psy15539         68 YMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPT  147 (333)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  147 (333)
                      ++..+.+.+..+..+......+..+|.+.++   +|++.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~---~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~   82 (394)
T PRK03699          6 IKLTWISFLSYALTGALVIVTGMVMGPIAEY---FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM   82 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4445555666667777777778888999888   9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH-----HHH
Q psy15539        148 LVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-----SVY  222 (333)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-----~~~  222 (333)
                      +++.+++.++++++.++++|++.|++.+...+....++.|++|+++|+.+.+..+....+|..++|.+.+++     +||
T Consensus        83 ~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~  162 (394)
T PRK03699         83 ILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWY  162 (394)
T ss_pred             HHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence            999999999999999999999999999988888899999999999999999988888888888888776554     799


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy15539        223 GLSIICALLPIFFVGLM  239 (333)
Q Consensus       223 ~~~~~~~~~~~~~~~~~  239 (333)
                      +.+++.+++.++..+..
T Consensus       163 ~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        163 WVYACIGLVYVAIFILT  179 (394)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99988877766554433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.85  E-value=6.3e-20  Score=165.53  Aligned_cols=147  Identities=14%  Similarity=0.053  Sum_probs=130.2

Q ss_pred             hccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy15539         85 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFC  164 (333)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  164 (333)
                      ....++.+|.+.++   +|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++++++++..++
T Consensus        25 ~~~~~~~lp~i~~~---~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll  101 (393)
T PRK09705         25 LTSVGPLLPQLRQA---SGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLL  101 (393)
T ss_pred             hhccchhHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHH
Confidence            35667889999998   999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHH
Q psy15539        165 AGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-----SVYGLSIICALLPIFF  235 (333)
Q Consensus       165 ~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  235 (333)
                      ++|++.|++.+...+....++.+++| ++|+++++++..+..+|..+++.+++++     +||..+.+.++..++.
T Consensus       102 ~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~  176 (393)
T PRK09705        102 SSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA  176 (393)
T ss_pred             HHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999997 7899999998887777777777776654     6888776655554433

>KOG0252|consensus

Probab=99.84  E-value=1.1e-20  Score=164.11  Aligned_cols=190  Identities=21%  Similarity=0.153  Sum_probs=155.9

Q ss_pred             cchhHHHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcc-----cccCchhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy15539         61 KAKRITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYP-----FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG  135 (333)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G  135 (333)
                      ....|++...+.++.++.+..+|+...++...|.+....+.     -++++...+.+.++..+|.++|++++|++.||+|
T Consensus        33 ~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~G  112 (538)
T KOG0252|consen   33 EGLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFG  112 (538)
T ss_pred             cchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            34567889999999999999999999888887766554211     1255667788899999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHH
Q psy15539        136 RKNTMLLLAVPTLVGWGLIIWSQ-------SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAG  208 (333)
Q Consensus       136 rr~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g  208 (333)
                      ||+++...++++.++++++++..       -+.++.+.|+++|+|.|+-||+..+..+|....+.||...+.....++.|
T Consensus       113 RK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~G  192 (538)
T KOG0252|consen  113 RKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFG  192 (538)
T ss_pred             chhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchh
Confidence            99999999999999999777642       35778889999999999999999999999999999999888766555555


Q ss_pred             HHHHHHHhHHH-------------------HHHHHHHHHHHHHHHHHHHhhcccCChHHHH
Q psy15539        209 ILFVYAVGSWA-------------------SVYGLSIICALLPIFFVGLMLLMPESPQFHL  250 (333)
Q Consensus       209 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  250 (333)
                      .+.|.+++..+                   -||..+.+.++++++.+...+.+||++++..
T Consensus       193 ilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~a  253 (538)
T KOG0252|consen  193 ILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTA  253 (538)
T ss_pred             HhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHH
Confidence            55555443322                   5999999988888888888888999998764

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.84  E-value=1.1e-19  Score=167.78  Aligned_cols=162  Identities=19%  Similarity=0.104  Sum_probs=129.6

Q ss_pred             HhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Q psy15539         78 GFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS  157 (333)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  157 (333)
                      .+..........+.+|.+.++   +|++..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++++++.++++++
T Consensus        45 ~~~~~~~~~~~~~~~~~l~~~---~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~  121 (476)
T PLN00028         45 FFTCFVSTFAAAPLLPIIRDN---LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV  121 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh
Confidence            333333444556678888888   99999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHH----HHHhHH---------HHHHHH
Q psy15539        158 QSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFV----YAVGSW---------ASVYGL  224 (333)
Q Consensus       158 ~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~----~~~~~~---------~~~~~~  224 (333)
                      ++...++++|++.|++.+... ....+++|++|+++||+++++.+....+|..++    +.+...         .+||+.
T Consensus       122 ~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~  200 (476)
T PLN00028        122 SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIA  200 (476)
T ss_pred             cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHH
Confidence            999999999999999887654 455678999999999999999875555555544    433221         379999


Q ss_pred             HHHHHHHHHHHHHHhhccc
Q psy15539        225 SIICALLPIFFVGLMLLMP  243 (333)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~  243 (333)
                      |++.+++.++..+..++++
T Consensus       201 f~i~g~l~l~~~l~~~~~~  219 (476)
T PLN00028        201 FFVPGLLHIIMGILVLTLG  219 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            9998888776554444444

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.84  E-value=1.2e-19  Score=163.50  Aligned_cols=200  Identities=13%  Similarity=0.031  Sum_probs=146.7

Q ss_pred             ccchhhhhhhhc-CCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH-----hh
Q psy15539         86 GWTSPAGDRLIA-GEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS-----QS  159 (333)
Q Consensus        86 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~  159 (333)
                      ...++..+.+.+ +   +|++.++.+++.++..+++.++.++.|++.||+|.|+++.++.+++++.+++.+++     ++
T Consensus        51 ~~~~~l~~~~~~~~---~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s  127 (462)
T PRK15034         51 MLFSAVTVNLNKIG---FNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTP  127 (462)
T ss_pred             HHHHHHHHHhhhhh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence            344555666655 5   99999999999999999999999999999999999999999999999999999887     79


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHH----HHHHHHhH------------------
Q psy15539        160 VIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGI----LFVYAVGS------------------  217 (333)
Q Consensus       160 ~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~----~~~~~~~~------------------  217 (333)
                      ++.+++.|++.|++ +..++.....+++++|+++||++.|+......+|.    .++|.+..                  
T Consensus       128 ~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~  206 (462)
T PRK15034        128 FGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGS  206 (462)
T ss_pred             HHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence            99999999999998 77889999999999999999999999854444444    44444331                  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh-cccCChHHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhccCccchHhh
Q psy15539        218 WASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQA  296 (333)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (333)
                      ..+|+...++..++.++..+..+ +.++.+.                                      ++.......+.
T Consensus       207 ~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~--------------------------------------~~~~~~~~~~v  248 (462)
T PRK15034        207 VMSLANAAWIWVPLLAIATIAAWSGMNDIAS--------------------------------------SRASIADQLPV  248 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--------------------------------------cccCHHHHHHH
Confidence            11367666666666655444443 3333221                                      00012234568


Q ss_pred             hcChhhHHHHHHHHHHHHHHhhcchhhhhhchhccc
Q psy15539        297 FSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIF  332 (333)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~  332 (333)
                      +|+|+.|.     +++..++.++++..+.+|.|+++
T Consensus       249 lk~~~~Wl-----lslly~~tFG~fvg~s~~lp~~~  279 (462)
T PRK15034        249 LQRLHLWL-----LSLLYLATFGSFIGFSAGFAMLA  279 (462)
T ss_pred             hCCCchhH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            88886332     33334556666677787887764

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.84  E-value=9.6e-20  Score=162.33  Aligned_cols=159  Identities=14%  Similarity=0.009  Sum_probs=138.5

Q ss_pred             hhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh
Q psy15539         79 FIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ  158 (333)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~  158 (333)
                      +..........+.+|.+..+   .+.+..+.+++.+++.++..++.++.|+++||+|||++++.+.++.+++.++..+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~---~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   85 (365)
T TIGR00900         9 LISLIGTAITQVALPLYVLA---GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVA   85 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555667888887   899999999999999999999999999999999999999999999988888888877


Q ss_pred             -----hHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHH
Q psy15539        159 -----SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICA  229 (333)
Q Consensus       159 -----~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~  229 (333)
                           +.+.++++|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|.++++.+++++    +|++.+++.+
T Consensus        86 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~  165 (365)
T TIGR00900        86 LLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDA  165 (365)
T ss_pred             HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence                 9999999999999999999999999999999999999999999999999999999988776    8999988877


Q ss_pred             HHHHHHHHHhh
Q psy15539        230 LLPIFFVGLML  240 (333)
Q Consensus       230 ~~~~~~~~~~~  240 (333)
                      +..++..+..+
T Consensus       166 ~~~~~~~~~~~  176 (365)
T TIGR00900       166 VGFAISALLIV  176 (365)
T ss_pred             HHHHHHHHHHH
Confidence            76665544443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.84  E-value=1.1e-20  Score=178.86  Aligned_cols=167  Identities=15%  Similarity=0.162  Sum_probs=143.1

Q ss_pred             HHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q psy15539         76 IGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII  155 (333)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~  155 (333)
                      +..+......++.+..++.+.++   ++++..+.|++.+.+.+++.++.++.++++||+|||+.+.++.+++++++++++
T Consensus        40 ~~~~~~~~~~g~~~~~l~~iek~---F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~a  116 (633)
T TIGR00805        40 CAQLQGLLYNGLVNSSLTTIERR---FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLS  116 (633)
T ss_pred             HHHHHHHHHHHHHHhhchhhhhh---hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHh
Confidence            34444455567777888999888   999999999999999999999999999999999999999999999999999887


Q ss_pred             HHh---------------------------------------------------hHHHHHHHHHHHhhhhhhhhhhhhhh
Q psy15539        156 WSQ---------------------------------------------------SVIMFCAGRLLTGFGGGSFAVVVPMY  184 (333)
Q Consensus       156 ~~~---------------------------------------------------~~~~~~~~~~l~G~~~g~~~~~~~~~  184 (333)
                      +.+                                                   .+..++++|++.|+|.+..++...++
T Consensus       117 lphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~  196 (633)
T TIGR00805       117 LPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISY  196 (633)
T ss_pred             ChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchh
Confidence            652                                                   24567789999999999999999999


Q ss_pred             hcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH--------------------------HHHHHHHHHHHHHHHHHHH
Q psy15539        185 TAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA--------------------------SVYGLSIICALLPIFFVGL  238 (333)
Q Consensus       185 ~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~  238 (333)
                      +.|++|+++|+.++++++.+..+|.++++++++++                          +|+..|++.+++.++..+.
T Consensus       197 i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~  276 (633)
T TIGR00805       197 IDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP  276 (633)
T ss_pred             hhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998887654                          2777788888877776555


Q ss_pred             hhcccCC
Q psy15539        239 MLLMPES  245 (333)
Q Consensus       239 ~~~~~e~  245 (333)
                      ++++|++
T Consensus       277 l~~~p~~  283 (633)
T TIGR00805       277 FFFFPKA  283 (633)
T ss_pred             HHhCccc
Confidence            6666654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.84  E-value=2.5e-19  Score=162.42  Aligned_cols=179  Identities=18%  Similarity=0.107  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Q psy15539         65 ITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLA  144 (333)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~  144 (333)
                      .+.+...+.+.+..+...+....+.+.+|.+.++   ++.+..+.++..+.+.+++.++.++.|+++||+|||+++.++.
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   85 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVED---FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGV   85 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            3445555666666666666667777778888888   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----H
Q psy15539        145 VPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----S  220 (333)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~  220 (333)
                      ++.+++.+++.++++++.+++.|++.|++.+...+...+.+.|.+|+++|++..++......+|..++|.+++++    +
T Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~  165 (406)
T PRK15402         86 AFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP  165 (406)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            999999999999999999999999999999988888899999999999999999988877888888888887765    8


Q ss_pred             HHHHHHHHHHHHHHHHHH-hhcccCCh
Q psy15539        221 VYGLSIICALLPIFFVGL-MLLMPESP  246 (333)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~-~~~~~e~~  246 (333)
                      |++.+++.+++.++..+. .+..||++
T Consensus       166 w~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (406)
T PRK15402        166 WRGMFVLFAALAALSFFGLWRAMPETA  192 (406)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999998887777665443 34567654

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.84  E-value=5.3e-19  Score=164.48  Aligned_cols=180  Identities=20%  Similarity=0.177  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q psy15539         66 TQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAV  145 (333)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  145 (333)
                      +++.....+.+..+...++.....+..|.+.++   +|.+..+.+++.+.+.+++.++.++.|+++||+|||+.++++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   93 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGE---FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIV   93 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            344455566666667777777777888988888   99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HH
Q psy15539        146 PTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SV  221 (333)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~  221 (333)
                      +.+++.+++.+.++++.++++|++.|++.++.++....++.|++|+++|+++.++...+..+|..+++.+.+++    +|
T Consensus        94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w  173 (496)
T PRK03893         94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGW  173 (496)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988776    89


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCChHH
Q psy15539        222 YGLSIICALLPIFFVGLMLLMPESPQF  248 (333)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~e~~~~  248 (333)
                      ++.+++.++..++.++....+||++++
T Consensus       174 ~~~f~~~~~~~~~~~~~~~~~p~~~~~  200 (496)
T PRK03893        174 RALFFIGILPIIFALWLRKNLPEAEDW  200 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence            998887555444444444456776544

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.83  E-value=7.8e-21  Score=170.15  Aligned_cols=165  Identities=17%  Similarity=0.084  Sum_probs=142.3

Q ss_pred             hhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhh
Q psy15539         80 IMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS  159 (333)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~  159 (333)
                      ....+....+...|.+.++   +|.+..+.+++.++..++..++.++.|+++||+|||++++++.++.+++.+++.++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~   82 (379)
T TIGR00881         6 AYYLVRKNFALAMPYLVEE---IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS   82 (379)
T ss_pred             HHHHhHHhhhhhhHHHHHH---hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh
Confidence            3344555666667888887   9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHH-HhHHH----HHHHHHHHHHHHHHH
Q psy15539        160 VIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYA-VGSWA----SVYGLSIICALLPIF  234 (333)
Q Consensus       160 ~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~-~~~~~----~~~~~~~~~~~~~~~  234 (333)
                      ++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++. ++..+    +|++.+++.+++.++
T Consensus        83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (379)
T TIGR00881        83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAII  162 (379)
T ss_pred             HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999883 44433    899998888777665


Q ss_pred             H-HHHhhcccCChH
Q psy15539        235 F-VGLMLLMPESPQ  247 (333)
Q Consensus       235 ~-~~~~~~~~e~~~  247 (333)
                      . ++..++.+|+|+
T Consensus       163 ~~~~~~~~~~~~~~  176 (379)
T TIGR00881       163 VSLICFLLLRDSPQ  176 (379)
T ss_pred             HHHHHheeeCCCcc
Confidence            4 444556676653

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.83  E-value=1.9e-19  Score=162.56  Aligned_cols=164  Identities=16%  Similarity=0.182  Sum_probs=141.1

Q ss_pred             hhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhh
Q psy15539         80 IMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS  159 (333)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~  159 (333)
                      ..........+.+|.+.++   +|.++.+.+++.+.+.++..++.++.|+++||+|||+.+.++.++.+++.+++.+.++
T Consensus        19 ~~~~~~~~~~p~~~~i~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~   95 (394)
T PRK11652         19 VGQMAQTIYVPAIADMARD---LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHS   95 (394)
T ss_pred             HHHHHHHHHhccHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence            3334445566678888888   9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHH
Q psy15539        160 VIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFF  235 (333)
Q Consensus       160 ~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~  235 (333)
                      ++.+++.|++.|++.+...+....+..|.++.++|+.+.+..+.+..++..++|.+++++    +|++.+++.++..++.
T Consensus        96 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~  175 (394)
T PRK11652         96 LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGV  175 (394)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence            999999999999998888888888889999999999999999999999999999888766    7999998887766554


Q ss_pred             -HHHhhcccCCh
Q psy15539        236 -VGLMLLMPESP  246 (333)
Q Consensus       236 -~~~~~~~~e~~  246 (333)
                       ++..++.||++
T Consensus       176 ~~~~~~~~~~~~  187 (394)
T PRK11652        176 TFSMARWMPETR  187 (394)
T ss_pred             HHHHHHhCCccC
Confidence             33445667754

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.83  E-value=1.3e-19  Score=165.85  Aligned_cols=172  Identities=14%  Similarity=0.042  Sum_probs=137.4

Q ss_pred             HHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q psy15539         72 LTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGW  151 (333)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  151 (333)
                      ....+................|.+. +   .|.++.+.+++.+++.++..++.++.|+++||+|||+.+.++.++.+++.
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~p~~~-~---~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~  105 (438)
T TIGR00712        30 LGIFFGYAAYYLVRKNFALAMPYLV-E---QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVM  105 (438)
T ss_pred             HHHHHHHHHHHHHhccHHhhhHHHH-H---cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHH
Confidence            3333333443333444444556554 5   68999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHH----hhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH-----HHH
Q psy15539        152 GLIIWS----QSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-----SVY  222 (333)
Q Consensus       152 ~~~~~~----~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-----~~~  222 (333)
                      +++.+.    .+...+++.|++.|++.+..++.....+.|++|+++|++++++.+.+..+|..+++.+....     +||
T Consensus       106 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~  185 (438)
T TIGR00712       106 LLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWH  185 (438)
T ss_pred             HHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhH
Confidence            877654    46677888899999999988888889999999999999999999999999988887765432     799


Q ss_pred             HHHHHHHHHHHHH-HHHhhcccCChH
Q psy15539        223 GLSIICALLPIFF-VGLMLLMPESPQ  247 (333)
Q Consensus       223 ~~~~~~~~~~~~~-~~~~~~~~e~~~  247 (333)
                      ..|++.+++.++. ++..+++||+|+
T Consensus       186 ~~f~~~~~~~~i~~~~~~~~~~~~~~  211 (438)
T TIGR00712       186 AALYFPAICAIIVALFAFAMMRDTPQ  211 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCHH
Confidence            9999988877664 445556788764

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11043 putative transporter; Provisional

Probab=99.83  E-value=3.3e-19  Score=161.39  Aligned_cols=160  Identities=17%  Similarity=0.131  Sum_probs=138.6

Q ss_pred             hhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy15539         83 TILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIM  162 (333)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  162 (333)
                      .....+.+.+|.+.++   +|.++.+.+++.+++.++..++++++|+++||+|||+.+..+.++.+++.+++.++++++.
T Consensus        20 ~~~~~~~p~~~~i~~~---~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~   96 (401)
T PRK11043         20 LATDMYLPAFKAIQAD---LQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQ   96 (401)
T ss_pred             HHHHHHHhhHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            3455666777888887   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHH
Q psy15539        163 FCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGL  238 (333)
Q Consensus       163 ~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  238 (333)
                      +++.|++.|++.+...+...+++.|++|+++++...+.......+|..++|.+++++    +|++.+++.+++.++..+.
T Consensus        97 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~  176 (401)
T PRK11043         97 LLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILP  176 (401)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            999999999998888887888899999999999988888888888888888888766    8999998888777766555


Q ss_pred             hhcccCC
Q psy15539        239 MLLMPES  245 (333)
Q Consensus       239 ~~~~~e~  245 (333)
                      .++++|+
T Consensus       177 ~~~~~~~  183 (401)
T PRK11043        177 TLRLKPS  183 (401)
T ss_pred             HHHcCCC
Confidence            5555544

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.83  E-value=4.7e-19  Score=160.36  Aligned_cols=166  Identities=15%  Similarity=0.039  Sum_probs=143.3

Q ss_pred             HHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q psy15539         71 ALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVG  150 (333)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~  150 (333)
                      ...++...+..++..+..++.+|.++++   +|.++.+.+++.+.+.+++.+++++.|++.||+|||+.++++.++++++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~---~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g   81 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQA---FTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALG   81 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            3445556666777777888889999888   9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH---HhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH--------
Q psy15539        151 WGLIIW---SQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA--------  219 (333)
Q Consensus       151 ~~~~~~---~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~--------  219 (333)
                      .+++..   .++++.+++.|++.|+|.|...+....++.+..|+++|++..++.+....+|..+++.++..+        
T Consensus        82 ~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~  161 (410)
T TIGR00885        82 AFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQ  161 (410)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            888654   357899999999999999999999999999999999999999999999999999888886533        


Q ss_pred             ----------------------HHHHHHHHHHHHHHHHHHHh
Q psy15539        220 ----------------------SVYGLSIICALLPIFFVGLM  239 (333)
Q Consensus       220 ----------------------~~~~~~~~~~~~~~~~~~~~  239 (333)
                                            +||++|++.+++.++..+..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       162 SQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             hhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                  49999988887766544333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.83  E-value=3.6e-19  Score=160.67  Aligned_cols=159  Identities=18%  Similarity=0.184  Sum_probs=139.4

Q ss_pred             hccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy15539         85 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFC  164 (333)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  164 (333)
                      .....+.+|.+.++   +|.+..+.++..+.+.++..+++++.|+++||+|||+.++++.++.+++.+++..+++.+.++
T Consensus        19 ~~~~~~~lp~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~   95 (392)
T PRK10473         19 IDMYLVGLPRIAAD---LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFL   95 (392)
T ss_pred             HHHHhhhHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence            33444668888888   999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHH-HHh
Q psy15539        165 AGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFV-GLM  239 (333)
Q Consensus       165 ~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~  239 (333)
                      +.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..++|.++..+    +|++.+++.+++.++.. +..
T Consensus        96 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~  175 (392)
T PRK10473         96 AGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSL  175 (392)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988999999999999999999999999999899999999887765    79998888877766543 344


Q ss_pred             hcccCCh
Q psy15539        240 LLMPESP  246 (333)
Q Consensus       240 ~~~~e~~  246 (333)
                      +++||++
T Consensus       176 ~~~~~~~  182 (392)
T PRK10473        176 FILKETR  182 (392)
T ss_pred             HHcCCCC
Confidence            5667653

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.83  E-value=1.1e-19  Score=162.65  Aligned_cols=157  Identities=15%  Similarity=0.087  Sum_probs=135.0

Q ss_pred             hccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy15539         85 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFC  164 (333)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  164 (333)
                      .....+..|.+.++   +|++..+.+++.+++.+++.+++++.|+++||+|||+++.++.++.+++.++++++++++.++
T Consensus        19 ~~~~~~~~~~~~~~---~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (377)
T TIGR00890        19 VYTWTLLAPPLGRY---FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALY   95 (377)
T ss_pred             HhhhhhHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            33456678888888   999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHH-h
Q psy15539        165 AGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGL-M  239 (333)
Q Consensus       165 ~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~  239 (333)
                      ++|++.|++.+..++.....+.+++| ++|+++.++...+..+|..+++++....    +||+.+++.+++.++..+. .
T Consensus        96 ~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  174 (377)
T TIGR00890        96 LTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGA  174 (377)
T ss_pred             HHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888888888888887 5799999999999999987765555443    7999999988877765444 3


Q ss_pred             hcccCC
Q psy15539        240 LLMPES  245 (333)
Q Consensus       240 ~~~~e~  245 (333)
                      ++++++
T Consensus       175 ~~~~~~  180 (377)
T TIGR00890       175 FLIGYP  180 (377)
T ss_pred             HheecC
Confidence            445544

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.82  E-value=1.4e-18  Score=156.79  Aligned_cols=149  Identities=16%  Similarity=0.205  Sum_probs=125.1

Q ss_pred             hhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy15539         92 GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTG  171 (333)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  171 (333)
                      .+.+..+   ++.++.+.+++.+.+.+++.++.+++|+++||+|||++++++.++.+++++++.+..+.   ++.|+++|
T Consensus        26 ~~~~~~~---~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G   99 (393)
T PRK11195         26 AIALLKE---LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVG   99 (393)
T ss_pred             HHHHHHH---cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence            4445566   88888899999999999999999999999999999999999999999888887776654   67899999


Q ss_pred             hhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHhhcccCCh
Q psy15539        172 FGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA---SVYGLSIICALLPIFFVGLMLLMPESP  246 (333)
Q Consensus       172 ~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~e~~  246 (333)
                      ++.+...|...+++.|++|+++|+++.++.+....+|..++|.+++++   .|+..+.+.+...++.++..+++||++
T Consensus       100 ~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~  177 (393)
T PRK11195        100 IGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            999999999999999999999999999999999999999999999887   344444444443333444456678765

>PRK10133 L-fucose transporter; Provisional

Probab=99.82  E-value=1.9e-18  Score=157.69  Aligned_cols=148  Identities=12%  Similarity=0.071  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q psy15539         67 QYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP  146 (333)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~  146 (333)
                      ....+....+..+..+..........|.+.++   +|.++.+.+++.+.+.+++.+++++.|++.||+|||+++.++.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~---~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~  100 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQA---FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL  100 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            34444555566666677777777889999887   999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH---HHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhH
Q psy15539        147 TLVGWGLI---IWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGS  217 (333)
Q Consensus       147 ~~~~~~~~---~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~  217 (333)
                      ++++++++   ..++++..++++|++.|++.|...+..+.++.|+.|+++|...+++.+..+.+|..+++.++.
T Consensus       101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~  174 (438)
T PRK10133        101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999875   457899999999999999999999999999999877777777888888888888888887753

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.81  E-value=5.9e-19  Score=157.65  Aligned_cols=159  Identities=15%  Similarity=0.044  Sum_probs=125.8

Q ss_pred             hhccchhhhhh-hhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh-hHH
Q psy15539         84 ILGWTSPAGDR-LIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ-SVI  161 (333)
Q Consensus        84 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~  161 (333)
                      ......+..|. +.++   +|++..+.+++.+++.+++++++++.|+++||+|||+.++++.++.+++.+++.+++ +++
T Consensus        16 ~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~   92 (366)
T TIGR00886        16 VWFAFSPLAVQMIKDD---LGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYS   92 (366)
T ss_pred             HHHHhHHhhhHHHHHH---hCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            34455667785 6666   999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH--------------HHHHHHH-
Q psy15539        162 MFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA--------------SVYGLSI-  226 (333)
Q Consensus       162 ~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~--------------~~~~~~~-  226 (333)
                      .+++.|++.|++.+ ..+....+++|++|+++|+++.++......+|..+++.++..+              +|++.++ 
T Consensus        93 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~  171 (366)
T TIGR00886        93 VLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI  171 (366)
T ss_pred             HHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence            99999999999865 4566788999999999999999998855555555554444322              5888883 


Q ss_pred             HHHHHHHH-HHHHhhcccCCh
Q psy15539        227 ICALLPIF-FVGLMLLMPESP  246 (333)
Q Consensus       227 ~~~~~~~~-~~~~~~~~~e~~  246 (333)
                      ..+++..+ .++..++.+|+|
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~  192 (366)
T TIGR00886       172 VPAGILLLPALLIFFVGADTP  192 (366)
T ss_pred             HHHHHHHHHHHHHHHhcccCC
Confidence            33444333 333444556655

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.81  E-value=4.6e-19  Score=159.05  Aligned_cols=159  Identities=21%  Similarity=0.263  Sum_probs=140.9

Q ss_pred             hccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy15539         85 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFC  164 (333)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  164 (333)
                      .....+.+|.+.++   +|.++.+.+++.+++.++..++.++.|+++||+|||+.+..+.++.+++.+++.+.++++.++
T Consensus         7 ~~~~~p~~~~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   83 (377)
T PRK11102          7 IDMYLPALPVIAAD---FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLI   83 (377)
T ss_pred             HHHHhccHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            34555778888888   999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHH-HHh
Q psy15539        165 AGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFV-GLM  239 (333)
Q Consensus       165 ~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~  239 (333)
                      ++|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.+++++    +|++.+++.+++.++.. +..
T Consensus        84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102         84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999899999999999999999999999999999999999888766    89999888777776643 344


Q ss_pred             hcccCCh
Q psy15539        240 LLMPESP  246 (333)
Q Consensus       240 ~~~~e~~  246 (333)
                      ++.||++
T Consensus       164 ~~~~~~~  170 (377)
T PRK11102        164 FFIPETL  170 (377)
T ss_pred             HhCCccC
Confidence            5667653

>PRK10504 putative transporter; Provisional

Probab=99.81  E-value=6e-18  Score=156.39  Aligned_cols=171  Identities=20%  Similarity=0.164  Sum_probs=147.1

Q ss_pred             HHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q psy15539         72 LTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGW  151 (333)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  151 (333)
                      +.+.++.+...++...+.+.+|.+.++   +|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~p~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   89 (471)
T PRK10504         13 WIVAFGFFMQSLDTTIVNTALPSMAQS---LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS   89 (471)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH---hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            344455556666666777789999988   99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHH
Q psy15539        152 GLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSII  227 (333)
Q Consensus       152 ~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~  227 (333)
                      +++.++++.+.++++|++.|++.+...+...+++.|++|+++|+++.++......+|..++|.+++++    +|++.|++
T Consensus        90 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~  169 (471)
T PRK10504         90 LFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLI  169 (471)
T ss_pred             HHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHH
Confidence            88888899999999999999999999999999999999999999999999999999999999988776    89999988


Q ss_pred             HHHHHHHHHHHh-hcccCC
Q psy15539        228 CALLPIFFVGLM-LLMPES  245 (333)
Q Consensus       228 ~~~~~~~~~~~~-~~~~e~  245 (333)
                      .....++..+.. ...|+.
T Consensus       170 ~~~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        170 NIPVGIIGAIATLMLMPNY  188 (471)
T ss_pred             HHHHHHHHHHHHHHhCCCc
Confidence            777665544333 344543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.81  E-value=3.2e-18  Score=153.84  Aligned_cols=146  Identities=16%  Similarity=0.139  Sum_probs=131.5

Q ss_pred             HHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q psy15539         71 ALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVG  150 (333)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~  150 (333)
                      +..+..+.+......+...+.+|.+.++   +|.+..+.|++.+.+.+++.+++++.|+++||+|||+.+..+.++.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~---~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~   84 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQ---EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAG   84 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555666777888889999998   9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        151 WGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      +++++++++++.++++|++.|++.+...+.....+.+..++++|+++++.+..+..+|..+++.+++.+
T Consensus        85 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  153 (381)
T PRK03633         85 CAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV  153 (381)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999988888877888889999999999999999999999999998776

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.80  E-value=1.8e-18  Score=160.51  Aligned_cols=187  Identities=20%  Similarity=0.200  Sum_probs=137.2

Q ss_pred             hhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH-H--HHHhhHHHHHH
Q psy15539         89 SPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGL-I--IWSQSVIMFCA  165 (333)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~-~--~~~~~~~~~~~  165 (333)
                      ...+|.+.++  .+|.+..+.++......++..++.++.|+++||+|||+.+.++.++..++.+. .  ..+.+...+++
T Consensus       270 ~~~~p~~l~~--~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (490)
T PRK10642        270 LTYMPSYLSH--NLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFA  347 (490)
T ss_pred             HHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            3446777643  27888777888888889999999999999999999999988877654433332 2  22345667778


Q ss_pred             HHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHH-HHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHh
Q psy15539        166 GRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTY-FQLQCTAGILFVYAVGSWA-----SVYGLSIICALLPIFFVGLM  239 (333)
Q Consensus       166 ~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~-~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  239 (333)
                      ++++.|++.+...+....++.|.+|++.||+++++ ++.+. +++.++|.+.+++     +|+.++++..+++++.++..
T Consensus       348 ~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~-~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~  426 (490)
T PRK10642        348 GLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISV-LVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG  426 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence            88888888777777778888999999999999997 55554 4456666666654     35666666666666666666


Q ss_pred             hcccCChHHHHhc-----CCHHHHHHHHHHHhCCCcchHHHHHHHHH
Q psy15539        240 LLMPESPQFHLKK-----NRVKQAKESLQWFRGSEYDIDSEITDMQN  281 (333)
Q Consensus       240 ~~~~e~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (333)
                      +++||+|++..++     ++.+|+++.+++++.   +.+.|.+++++
T Consensus       427 ~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~~---~~~~~~~~i~~  470 (490)
T PRK10642        427 VTMKETANRPLKGATPAASDIQEAKEILVEHYD---NIEQKIDDIDQ  470 (490)
T ss_pred             HHhccccCCCCCCccccccchhhHHHHhhcccc---cccchhhhccc
Confidence            7789999987754     888999999998873   34444444443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.80  E-value=2.6e-18  Score=155.44  Aligned_cols=158  Identities=16%  Similarity=0.188  Sum_probs=129.4

Q ss_pred             HHHhhhhhhhccchhhhhhhh-cCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q psy15539         76 IGGFIMGTILGWTSPAGDRLI-AGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI  154 (333)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~  154 (333)
                      +..+......+...+.+|.+. ++   +|.++.+.+++.+++.+++.+++++.|+++||+|||++++.+.++.+++.+.+
T Consensus        22 ~~~~~~~~~~~~~~~~l~~~i~~~---~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~   98 (399)
T PRK05122         22 MFTFISYLTIGLPLAVLPGYVHDQ---LGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLY   98 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh---cCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHH
Confidence            333344445556667777754 55   89999999999999999999999999999999999999999999888776665


Q ss_pred             HHH--------hhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHH
Q psy15539        155 IWS--------QSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVY  222 (333)
Q Consensus       155 ~~~--------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~  222 (333)
                      .++        .++..+++.|++.|++.+...+....++.|++|+++|+++.++.+.+..+|.++++.+++++    +|+
T Consensus        99 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~  178 (399)
T PRK05122         99 LLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLA  178 (399)
T ss_pred             HHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHH
Confidence            443        25667899999999999999999889999999999999999998888888888888887766    788


Q ss_pred             HHHHHHHHHHHHHH
Q psy15539        223 GLSIICALLPIFFV  236 (333)
Q Consensus       223 ~~~~~~~~~~~~~~  236 (333)
                      ..+++.++..++..
T Consensus       179 ~~~~~~~~~~~~~~  192 (399)
T PRK05122        179 GLGLLIMLLALLGL  192 (399)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88777665554433

>PRK12382 putative transporter; Provisional

Probab=99.79  E-value=5.6e-18  Score=152.92  Aligned_cols=145  Identities=14%  Similarity=0.168  Sum_probs=121.3

Q ss_pred             hhccchhhhhhhh-cCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH------
Q psy15539         84 ILGWTSPAGDRLI-AGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW------  156 (333)
Q Consensus        84 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------  156 (333)
                      ..+...+.+|.+. ++   +|.|..+.+++.+++.+++.+++++.|+++||+|||++++.+.++.+++.+....      
T Consensus        30 ~~~~~~p~l~~~l~~~---lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~  106 (392)
T PRK12382         30 TVGLPLPVIPLFVHHD---LGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPV  106 (392)
T ss_pred             HHHHHhhhhhHHHHHh---cCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            4455566777654 56   9999999999999999999999999999999999999999988877766543321      


Q ss_pred             --HhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHH
Q psy15539        157 --SQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICAL  230 (333)
Q Consensus       157 --~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~  230 (333)
                        ..+++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++++    +|+..+.+..+
T Consensus       107 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~  186 (392)
T PRK12382        107 SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMV  186 (392)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence              357888999999999999988888888999999999999999999999999999999888765    78776655444


Q ss_pred             H
Q psy15539        231 L  231 (333)
Q Consensus       231 ~  231 (333)
                      .
T Consensus       187 ~  187 (392)
T PRK12382        187 L  187 (392)
T ss_pred             H
Confidence            3

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.79  E-value=1.9e-18  Score=158.68  Aligned_cols=170  Identities=15%  Similarity=0.034  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q psy15539         68 YMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPT  147 (333)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  147 (333)
                      |..+..+.+...........++...|.+.++   +|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.
T Consensus        18 w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   94 (455)
T TIGR00892        18 WVVLGATFVSIGFSYAFPKAVTVFFKELQQI---FQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLA   94 (455)
T ss_pred             hHHHHHHHHHHHHHHhhhcchhhhHHHHHHH---hCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHH
Confidence            4444444443332222233455667888888   9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhHHHHHH-HHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHH
Q psy15539        148 LVGWGLIIWSQSVIMFCA-GRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVY  222 (333)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~-~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~  222 (333)
                      ++++++++++++++.+++ .|++.|++.+...+...+++.++++ ++|+++.++.+.+..+|..++|.+++++    +||
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr  173 (455)
T TIGR00892        95 SLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWR  173 (455)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChH
Confidence            999999999999888765 4689999988776777788889886 7899999999999999999998887765    899


Q ss_pred             HHHHHHHHHHHHHHHHhhc
Q psy15539        223 GLSIICALLPIFFVGLMLL  241 (333)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~  241 (333)
                      +.|++.+++.++..+..++
T Consensus       174 ~~f~~~~~~~~~~~v~~~~  192 (455)
T TIGR00892       174 GSFLILGGLLLHCCVCGAL  192 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999988877655444433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.79  E-value=7.5e-18  Score=152.30  Aligned_cols=156  Identities=15%  Similarity=0.126  Sum_probs=134.5

Q ss_pred             ccchhhhhhh-hcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy15539         86 GWTSPAGDRL-IAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFC  164 (333)
Q Consensus        86 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  164 (333)
                      ....+.++.+ .++   +|.+..+.|++.+...++..+.+++.|+++||+|||+++.++.++.+++.+++.+.++.+.++
T Consensus        27 ~~~~~~~~~~~~~~---~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~  103 (400)
T PRK11646         27 FVVFPLISIRFVDQ---LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLW  103 (400)
T ss_pred             HHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            3344555554 455   899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHH-HHhh
Q psy15539        165 AGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA---SVYGLSIICALLPIFFV-GLML  240 (333)
Q Consensus       165 ~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~  240 (333)
                      +.|++.|++.+...+...+++.|++|+++|+++.++......+|..++|.+++++   +|++.|++.++..++.. +..+
T Consensus       104 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~  183 (400)
T PRK11646        104 LSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAW  183 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888888899999999999999999999999999999999998877   89998888777665543 3334


Q ss_pred             cccC
Q psy15539        241 LMPE  244 (333)
Q Consensus       241 ~~~e  244 (333)
                      +.||
T Consensus       184 ~~~~  187 (400)
T PRK11646        184 LLPA  187 (400)
T ss_pred             hCCc
Confidence            4554

>PRK10054 putative transporter; Provisional

Probab=99.78  E-value=9.3e-18  Score=151.45  Aligned_cols=162  Identities=15%  Similarity=0.070  Sum_probs=135.9

Q ss_pred             hhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHH
Q psy15539         82 GTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVI  161 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~  161 (333)
                      ....+...+.+|.+.++  ++|++..+.+++.+.+.++..+++++.|+++||+|||++++++.++.+++.++..+.++++
T Consensus        20 ~~g~~~~~~~l~~~l~~--~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~   97 (395)
T PRK10054         20 TIGRGATLPFMTIYLSR--QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVT   97 (395)
T ss_pred             HHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHH
Confidence            33344555556655543  2899999999999999999999999999999999999999999999999999889999998


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHH
Q psy15539        162 MFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA---SVYGLSIICALLPIFFVGL  238 (333)
Q Consensus       162 ~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  238 (333)
                      .+++++++.|.+.+...+...++..|..|+++|+++.++......+|.+++|.+++++   +|+..|++.+++.++.++.
T Consensus        98 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~  177 (395)
T PRK10054         98 LVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVF  177 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence            8888899988888877888899999999999999999999999999999999998877   7888888877776665433


Q ss_pred             -hhcccCC
Q psy15539        239 -MLLMPES  245 (333)
Q Consensus       239 -~~~~~e~  245 (333)
                       .+++|++
T Consensus       178 ~~~~~~~~  185 (395)
T PRK10054        178 IQIWVQRS  185 (395)
T ss_pred             HHHHHhcc
Confidence             3445543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.77  E-value=2.9e-17  Score=148.98  Aligned_cols=165  Identities=21%  Similarity=0.182  Sum_probs=136.3

Q ss_pred             HHhhhhhhhccchhhhhhhhcCCcccccCchh-----HHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q psy15539         77 GGFIMGTILGWTSPAGDRLIAGEYPFLVTESD-----LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGW  151 (333)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~  151 (333)
                      ..+..+...+...+.+|.+.++   +|.+..+     .+++.+++.++..+++++.|+++||+|||+.++.+.++.+++.
T Consensus        22 ~~~~~~~~~~~~~~~l~~~~~~---~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   98 (408)
T PRK09874         22 GCFLTGAAFSLVMPFLPLYVEQ---LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVM   98 (408)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHH---hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHH
Confidence            3344445555667778888887   8887654     4888999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHH
Q psy15539        152 GLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSII  227 (333)
Q Consensus       152 ~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~  227 (333)
                      +++.+.++++.+++.|++.|++.+ ..+....++.+.+|+++|+++.++...+..+|..+++.+++.+    +|++.+++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  177 (408)
T PRK09874         99 VLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFI  177 (408)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            988888999999999999999765 5577778889999999999999999999999999998888765    79998888


Q ss_pred             HHHHHHHHHH-HhhcccCC
Q psy15539        228 CALLPIFFVG-LMLLMPES  245 (333)
Q Consensus       228 ~~~~~~~~~~-~~~~~~e~  245 (333)
                      .+++.++..+ ..++++|.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        178 TASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHHHHHHHHHHHHHHhccC
Confidence            8777665443 33455554

>TIGR00897 2A0118 polyol permease family

Probab=99.77  E-value=1.8e-17  Score=150.14  Aligned_cols=134  Identities=13%  Similarity=0.099  Sum_probs=112.9

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH---H-HhhHHHHHH
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII---W-SQSVIMFCA  165 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~  165 (333)
                      ..++.+.++   +|.++.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++++.   . ..+++.+++
T Consensus        34 ~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  110 (402)
T TIGR00897        34 GWLSPFLKA---LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILL  110 (402)
T ss_pred             HhHHHHHHH---hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHH
Confidence            345667677   899999999999999999999999999999999999999999999888876553   2 247888889


Q ss_pred             HHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHH-HHHHHHhHHH----HHHHHHH
Q psy15539        166 GRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGI-LFVYAVGSWA----SVYGLSI  226 (333)
Q Consensus       166 ~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~-~~~~~~~~~~----~~~~~~~  226 (333)
                      .|++.|++.+...+...+++.+.+|+++|++++|+.+.+..+|. .+++.+++++    +|+..++
T Consensus       111 ~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~  176 (402)
T TIGR00897       111 FYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLW  176 (402)
T ss_pred             HHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence            99999999888877778888999999999999999999999986 5788877654    5544433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00896 CynX cyanate transporter

Probab=99.77  E-value=1.4e-17  Score=148.30  Aligned_cols=143  Identities=13%  Similarity=0.078  Sum_probs=123.9

Q ss_pred             ccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy15539         86 GWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCA  165 (333)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      ...++.+|.+.++   +|.+.++.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.+.+ ..++.+.+++
T Consensus        17 ~~~~~~lp~l~~~---~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~   92 (355)
T TIGR00896        17 TSVGPLLPQIRSA---LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFA   92 (355)
T ss_pred             ccCcccHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHH
Confidence            4566778999998   99999999999999999999999999999999999999999998888887777 6788888999


Q ss_pred             HHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHH
Q psy15539        166 GRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA------SVYGLSIICALLPI  233 (333)
Q Consensus       166 ~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~  233 (333)
                      .|++.|++.+...+....++.|++| ++|+++.++++.+..+|..+++.+...+      +|+..+.+.+++.+
T Consensus        93 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~  165 (355)
T TIGR00896        93 GTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL  165 (355)
T ss_pred             HHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            9999999999888888888889886 6899999999999889988888776654      28887776655443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.77  E-value=8.3e-18  Score=153.04  Aligned_cols=159  Identities=19%  Similarity=0.108  Sum_probs=133.1

Q ss_pred             hccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH-----Hhh
Q psy15539         85 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW-----SQS  159 (333)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~  159 (333)
                      .......+|.+.++   ++.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+....     .++
T Consensus        33 ~~~~~~~~~~~~~~---~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  109 (417)
T PRK10489         33 LGLLGVAVPVQIQM---MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPS  109 (417)
T ss_pred             HHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCc
Confidence            34445567878777   8889999999999999999999999999999999999999888877776665442     457


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHH
Q psy15539        160 VIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFF  235 (333)
Q Consensus       160 ~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~  235 (333)
                      ++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.+++++    +|++.+++.++..++.
T Consensus       110 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~  189 (417)
T PRK10489        110 LLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFIT  189 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            788889999999998888888889999999999999999999999999999999988765    7888888877776666


Q ss_pred             HHHhhcccCCh
Q psy15539        236 VGLMLLMPESP  246 (333)
Q Consensus       236 ~~~~~~~~e~~  246 (333)
                      ++..+.+|+++
T Consensus       190 ~~~~~~l~~~~  200 (417)
T PRK10489        190 LLPLLRLPALP  200 (417)
T ss_pred             HHHHHhCCCCC
Confidence            66666677653

>PTZ00207 hypothetical protein; Provisional

Probab=99.77  E-value=6e-17  Score=150.09  Aligned_cols=173  Identities=12%  Similarity=0.045  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q psy15539         66 TQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAV  145 (333)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  145 (333)
                      ++|..+....+.....+. .+..+...|.+.++   +|++..+.+++.++. ....+++++.|+++||+|+|+++.++.+
T Consensus        25 ~Rw~~lva~~~~~~~~g~-~y~fsv~s~~L~~~---lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~l   99 (591)
T PTZ00207         25 RRFALLVLGAFCSICTSF-MYAFNLISGAMQAR---YNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMT   99 (591)
T ss_pred             chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---hCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            345444444444333333 22334556777777   999999999988763 4455678889999999999999999999


Q ss_pred             HHHHHHHHHHHH------hhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHH-HHHHhHH
Q psy15539        146 PTLVGWGLIIWS------QSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILF-VYAVGSW  218 (333)
Q Consensus       146 ~~~~~~~~~~~~------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~-~~~~~~~  218 (333)
                      ++++++++++++      .+++.++++|++.|+|.+..++.....+.+++| ++||++.|+...+.++|+++ +++...+
T Consensus       100 l~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l  178 (591)
T PTZ00207        100 VFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAF  178 (591)
T ss_pred             HHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999987      589999999999999999888888889999996 78999999999999999975 4444444


Q ss_pred             H--HHHHHHHHHHHHHHHHH-HHhhcccC
Q psy15539        219 A--SVYGLSIICALLPIFFV-GLMLLMPE  244 (333)
Q Consensus       219 ~--~~~~~~~~~~~~~~~~~-~~~~~~~e  244 (333)
                      .  +|+..+++.+++.++.. +..+++++
T Consensus       179 ~~~~~~~~fl~l~vl~~vv~ll~~~~vr~  207 (591)
T PTZ00207        179 FSDNTSAYFFFLMSFALVVGILAIVFMRL  207 (591)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHhheeC
Confidence            4  77777777777776543 33334433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.76  E-value=4e-17  Score=146.29  Aligned_cols=167  Identities=13%  Similarity=0.170  Sum_probs=132.1

Q ss_pred             Hhhhhhhhccchhhhhhhh-cCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH-HHHHHHHHHHHHH
Q psy15539         78 GFIMGTILGWTSPAGDRLI-AGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL-LAVPTLVGWGLII  155 (333)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~  155 (333)
                      ++..+...+...+.+|.+. ++   +|.++.+.+++.+.+.++..+.+++.|.++||+||||.+++ +.++.+++.+++.
T Consensus         6 ~~~~~~~~~~~~~~l~~~l~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~   82 (375)
T TIGR00899         6 AFLTGIAGALQFPTLSLFLSEE---VRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA   82 (375)
T ss_pred             HHHHHHHHHHHhhHHHHHHHcc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Confidence            4445555666667777765 55   99999999999999999999999999999999999887654 5566667778888


Q ss_pred             HHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhH--HHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHH
Q psy15539        156 WSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTL--GTYFQLQCTAGILFVYAVGSWA----SVYGLSIICA  229 (333)
Q Consensus       156 ~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~--~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~  229 (333)
                      ++++++.+++.|++.|.+.+...+...++..|+.|++.|+..  .+....+..+|.++++.+++++    +|++.+++.+
T Consensus        83 ~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~  162 (375)
T TIGR00899        83 WNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAA  162 (375)
T ss_pred             hcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHH
Confidence            889999999999999888777888888888898887777654  5667777788888888887765    8999999988


Q ss_pred             HHHHHHHHH-hhcccCChH
Q psy15539        230 LLPIFFVGL-MLLMPESPQ  247 (333)
Q Consensus       230 ~~~~~~~~~-~~~~~e~~~  247 (333)
                      ++.++..+. .+++||.|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~  181 (375)
T TIGR00899       163 LAFVLCGVLVWLFLPSYPR  181 (375)
T ss_pred             HHHHHHHHHHHHhCCCccc
Confidence            876665444 445787653

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.76  E-value=3.9e-17  Score=144.52  Aligned_cols=165  Identities=28%  Similarity=0.371  Sum_probs=145.7

Q ss_pred             HHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q psy15539         76 IGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII  155 (333)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~  155 (333)
                      +..+..........+..|.+.++   .|.+..+.+++.+...++..++.++.|+++||+|||+.+.++.++..++.+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~   82 (352)
T cd06174           6 LGFFLSGLDRGLLSPALPLLAED---LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA   82 (352)
T ss_pred             HHHHHHHHhhhhhHhhHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence            34445555666677778888888   899999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHH
Q psy15539        156 WSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALL  231 (333)
Q Consensus       156 ~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~  231 (333)
                      +.++.+.++++|++.|++.+...+...+++.|++|+++|++..++.+....+|..+++.+++.+    +|++.+++.+++
T Consensus        83 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (352)
T cd06174          83 FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAIL  162 (352)
T ss_pred             HhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998877    689998888877


Q ss_pred             HHHHHHHhhccc
Q psy15539        232 PIFFVGLMLLMP  243 (333)
Q Consensus       232 ~~~~~~~~~~~~  243 (333)
                      .++..+..++++
T Consensus       163 ~~~~~~~~~~~~  174 (352)
T cd06174         163 GLLLALLLLFLL  174 (352)
T ss_pred             HHHHHHHHHHHH
Confidence            776555444443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.75  E-value=4.8e-17  Score=146.38  Aligned_cols=143  Identities=23%  Similarity=0.261  Sum_probs=114.7

Q ss_pred             cCchhHHHHHHH-----HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHH--------HHHHHHHHH
Q psy15539        104 VTESDLSFIGSS-----MALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVI--------MFCAGRLLT  170 (333)
Q Consensus       104 ~~~~~~~~~~~~-----~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~  170 (333)
                      .++.+.+.+.+.     ..++..+++++.|+++||+|||+++.++.++.+++.+++.+++++.        .++++|++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  106 (394)
T TIGR00883        27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ  106 (394)
T ss_pred             CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence            444555554432     3344457899999999999999999999999999999999887764        478889999


Q ss_pred             hhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH------------HHHHHHHHHHHHHHHHHHH
Q psy15539        171 GFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA------------SVYGLSIICALLPIFFVGL  238 (333)
Q Consensus       171 G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~  238 (333)
                      |++.+...+....++.|++|+++|++..++.+.+..+|.++++.++..+            +|++.+++.+++.++..+.
T Consensus       107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  186 (394)
T TIGR00883       107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL  186 (394)
T ss_pred             HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888775432            6898888877666555544


Q ss_pred             hhcccCCh
Q psy15539        239 MLLMPESP  246 (333)
Q Consensus       239 ~~~~~e~~  246 (333)
                      ....||++
T Consensus       187 ~~~~~~~~  194 (394)
T TIGR00883       187 RRNLEETP  194 (394)
T ss_pred             HHhcCCCh
Confidence            44566654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.75  E-value=5.7e-17  Score=140.40  Aligned_cols=203  Identities=17%  Similarity=0.123  Sum_probs=152.4

Q ss_pred             chhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhh---HHHHH
Q psy15539         88 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS---VIMFC  164 (333)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~---~~~~~  164 (333)
                      .++..+.+.++   +++|+.|.+++.++..+...+..++.|++.||+|.|++..++.++..+.++..+++.+   .+.++
T Consensus        33 ~s~l~~~i~~~---~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll  109 (417)
T COG2223          33 FSPLGVFIKSD---FGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLL  109 (417)
T ss_pred             HHHHHhhhccc---cCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHH
Confidence            34445556566   9999999999999999999999999999999999999999999999999999998764   45999


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHH---HHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHH
Q psy15539        165 AGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQ---LQCTAGILFVYAVGSWAS---VYGLSIICALLPIFFVGL  238 (333)
Q Consensus       165 ~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~---~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  238 (333)
                      +++++.|++.+ .+.+...+++.++|++++|.++|++.   .+..+.+.++|.+....+   |+....+..+..++..+.
T Consensus       110 ~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~  188 (417)
T COG2223         110 VIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAGAGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVL  188 (417)
T ss_pred             HHHHHHhcccc-eehcccccccccCChhhhhHHHHHhccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999855 77888999999999999999999976   344445555666655556   888887777777664444


Q ss_pred             -hhcccCChHHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhccCc-cchHhhhcChhhHHHHHHHHHHHHHH
Q psy15539        239 -MLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDK-VPLMQAFSTPAAKRGLLIGLGVMFIQ  316 (333)
Q Consensus       239 -~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (333)
                       ++...+.|....                                  ..++.. ..++.++++++.|     .+.+..+.
T Consensus       189 ~~~~~~d~p~~r~----------------------------------~~~~~~~~~~~~v~~~~~~W-----~lsllY~~  229 (417)
T COG2223         189 AWLGMNDVPEHRA----------------------------------SVKPQLPAQLKAVFSNKDTW-----LLSLLYFA  229 (417)
T ss_pred             HHHHhCCChhhhc----------------------------------cccccchhHHHHHhcCcchH-----HHHHHHHH
Confidence             445555543100                                  000011 3456777777533     34455555


Q ss_pred             hhcchhhhhhchhcccC
Q psy15539        317 QFGGINAVVFYTVKIFK  333 (333)
Q Consensus       317 ~~~~~~~~~~y~~~~~~  333 (333)
                      .+.++..++.|+|.|++
T Consensus       230 tFG~Fvgfs~~l~~~~~  246 (417)
T COG2223         230 TFGGFVGFSAYLPMYLV  246 (417)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            67788889999988763

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.73  E-value=1.2e-16  Score=147.23  Aligned_cols=146  Identities=17%  Similarity=0.175  Sum_probs=121.0

Q ss_pred             chhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy15539         88 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGR  167 (333)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (333)
                      ....++.+..+   +|-+ ....|+.+...++..++.++.|.++|.||||.+++.+.++..+++++++.++|...++++.
T Consensus        63 ~a~~l~~I~~d---iG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~  138 (599)
T PF06609_consen   63 PASILPYINAD---IGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGM  138 (599)
T ss_pred             cHHHHHHHHHh---cCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHH
Confidence            34456767776   7765 5688999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHH
Q psy15539        168 LLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGL  238 (333)
Q Consensus       168 ~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  238 (333)
                      .+.|+|.|.... ....++|..|.|.|+.+.++......+....++.++..+    +|||.|++.++...+.++.
T Consensus       139 ~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  139 VLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL  212 (599)
T ss_pred             HHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence            999999877664 455689999999998888776665555555566666544    8999999998877665443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.71  E-value=7.4e-16  Score=132.75  Aligned_cols=167  Identities=22%  Similarity=0.109  Sum_probs=143.6

Q ss_pred             HHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q psy15539         71 ALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVG  150 (333)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~  150 (333)
                      ...+....++.|+......+.+|++.+.   ++++..+++++...++.|+.+++++.|++.+|+|+|+.++.|..+++++
T Consensus        15 ~v~~t~lFfl~G~~~~l~diLip~l~~~---f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg   91 (422)
T COG0738          15 FVLLTSLFFLWGFITCLNDILIPHLKEV---FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVG   91 (422)
T ss_pred             HHHHHHHHHHHHHHhhcchhhHHHHHHH---hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            4445555566677777888889999998   9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH---HHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH--------
Q psy15539        151 WGLII---WSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA--------  219 (333)
Q Consensus       151 ~~~~~---~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~--------  219 (333)
                      ++++.   ...++..++++-++.|.|.+...+..+.++....+++.-...+++.+..+++|.+++|+++.++        
T Consensus        92 ~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~  171 (422)
T COG0738          92 AALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALT  171 (422)
T ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhc
Confidence            99885   4468889999999999999999999999999999998888999999999999999999998754        


Q ss_pred             ---------------HHHHHHHHHHHHHHHHHHHhh
Q psy15539        220 ---------------SVYGLSIICALLPIFFVGLML  240 (333)
Q Consensus       220 ---------------~~~~~~~~~~~~~~~~~~~~~  240 (333)
                                     .|+.+|...+...++..+...
T Consensus       172 ~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~  207 (422)
T COG0738         172 MSAAQILAIKGADASSVQFPYLILAGLLVLLAVLIL  207 (422)
T ss_pred             cCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence                           355666666665555444443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.71  E-value=9.9e-16  Score=141.90  Aligned_cols=170  Identities=20%  Similarity=0.198  Sum_probs=135.4

Q ss_pred             HHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhcc-----chhHH-HHHHHH
Q psy15539         72 LTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-----GRKNT-MLLLAV  145 (333)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-----Grr~~-l~~~~~  145 (333)
                      ....+..+..+.........+|.+.++   .|.+..+.+.+ +.....+ ++.+++|+++||+     |||+. +.++.+
T Consensus        15 ~~~~~l~~~~gl~~~~~~~~l~~~l~~---~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i   89 (491)
T PRK11010         15 AILLILGFASGLPLALTSGTLQAWMTV---ENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQL   89 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHH
Confidence            334444445566666777788999888   89998888886 3333443 6899999999999     99986 556777


Q ss_pred             HHHHHHHHHHHH---hhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH---
Q psy15539        146 PTLVGWGLIIWS---QSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA---  219 (333)
Q Consensus       146 ~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~---  219 (333)
                      +.+++.+++++.   .+++.+.+.+++.|++.+...+...++..|++|+++|+++.++...+..+|.++++.++.++   
T Consensus        90 ~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~  169 (491)
T PRK11010         90 LLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR  169 (491)
T ss_pred             HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            777777777664   46778888999999999999999999999999999999999999999999999988776654   


Q ss_pred             --HHHHHHHHHHHHHHHHHHHhhcccCCh
Q psy15539        220 --SVYGLSIICALLPIFFVGLMLLMPESP  246 (333)
Q Consensus       220 --~~~~~~~~~~~~~~~~~~~~~~~~e~~  246 (333)
                        +||..|++.+++.++..+..++.||++
T Consensus       170 ~~GWr~~f~i~a~l~ll~~l~~~~~~e~~  198 (491)
T PRK11010        170 YLGWQGMYWLMAALLIPCIIATLLAPEPT  198 (491)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence              799999998887776666555677764

>KOG2615|consensus

Probab=99.71  E-value=2.4e-16  Score=134.21  Aligned_cols=117  Identities=21%  Similarity=0.253  Sum_probs=107.9

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhh
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVV  181 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~  181 (333)
                      .+.+..-.|.+.+.++++.++.++.+|.++||+|||+++.++++..+++..+.+.+.|+..+.+.|++.|+..| ...+.
T Consensus        63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~  141 (451)
T KOG2615|consen   63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVI  141 (451)
T ss_pred             ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHH
Confidence            34455678999999999999999999999999999999999999999999999999999777777999999987 56678


Q ss_pred             hhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        182 PMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       182 ~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      -++++|++++++|+.+++..++.+++|.++||.+++++
T Consensus       142 rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyl  179 (451)
T KOG2615|consen  142 RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYL  179 (451)
T ss_pred             HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHH
Confidence            89999999999999999999999999999999999987

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.70  E-value=2.5e-16  Score=145.33  Aligned_cols=165  Identities=12%  Similarity=-0.021  Sum_probs=129.4

Q ss_pred             HHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHHH
Q psy15539         76 IGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTLVGWGLI  154 (333)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~  154 (333)
                      +..+...+..+.....++.|..+  ++|.+.++.+++.+.+.....+..+++|+++|| +||||+++++.++++++++++
T Consensus        21 ~~~~~er~~~y~~~~~l~~yl~~--~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~   98 (489)
T PRK10207         21 FVELWERFGYYGVQGILAVFFVK--QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMT   98 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence            33333444444444445545443  389999999999999998888889999999999 999999999999999999999


Q ss_pred             HHHhhHH-HHHHHHHHHhhhhhhhhhhhhhhhcccCCCcc--hhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHH
Q psy15539        155 IWSQSVI-MFCAGRLLTGFGGGSFAVVVPMYTAEIAETEI--RGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSII  227 (333)
Q Consensus       155 ~~~~~~~-~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~--rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~  227 (333)
                      +++.+.. .++++|++.|+|.|...+...++++|.+|+++  |+.+.+++..+..+|..++|.+++++    +|++.|++
T Consensus        99 ~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i  178 (489)
T PRK10207         99 GMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNL  178 (489)
T ss_pred             HHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence            9876544 35578999999999999999999999998874  57788888888899988888887776    89999988


Q ss_pred             HHHHHHHHHHHhhcc
Q psy15539        228 CALLPIFFVGLMLLM  242 (333)
Q Consensus       228 ~~~~~~~~~~~~~~~  242 (333)
                      .++..++.++.+++.
T Consensus       179 ~~i~~~~~~~~~~~~  193 (489)
T PRK10207        179 CGAGLIIALLVYFAC  193 (489)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            665444444444433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.70  E-value=7.9e-16  Score=139.35  Aligned_cols=166  Identities=18%  Similarity=0.154  Sum_probs=136.2

Q ss_pred             HHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhcc-----chhH-HHHHHHHHHHH
Q psy15539         76 IGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-----GRKN-TMLLLAVPTLV  149 (333)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-----Grr~-~l~~~~~~~~~  149 (333)
                      ..++..+...+.....+|.+.++   .|++.+++|++..+...  .+..+++|+++||+     |||| .+.++.++.++
T Consensus         6 ~l~~~~~~~~~~~~~~~~~~l~~---~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l   80 (402)
T PRK11902          6 LLGFASGLPLALTSGTLQAWMTV---EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA   80 (402)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence            34455667777778889999999   99999999999777665  69999999999999     8876 67778888887


Q ss_pred             HHHHHHHH---hhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH-----HH
Q psy15539        150 GWGLIIWS---QSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-----SV  221 (333)
Q Consensus       150 ~~~~~~~~---~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-----~~  221 (333)
                      +..++.+.   .+++.+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.++     +|
T Consensus        81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw  160 (402)
T PRK11902         81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGW  160 (402)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCH
Confidence            87777776   35677777777888888888899999999999999999999999999999999988876554     79


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCh
Q psy15539        222 YGLSIICALLPIFFVGLMLLMPESP  246 (333)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~e~~  246 (333)
                      +..|++.+++.++..+..++.||++
T Consensus       161 ~~~f~i~a~~~l~~~l~~~~~~e~~  185 (402)
T PRK11902        161 GNTYLLMAGLMLAGALTTLWAPEPE  185 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            9999998887766555555667654

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.70  E-value=3.8e-16  Score=143.95  Aligned_cols=165  Identities=12%  Similarity=-0.039  Sum_probs=137.5

Q ss_pred             HHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHHHH
Q psy15539         77 GGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTLVGWGLII  155 (333)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~  155 (333)
                      ..+......+...+.+|.|..+...+|.+..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++.+++.++++
T Consensus        18 ~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~   97 (475)
T TIGR00924        18 VELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLA   97 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence            333444444455566777776522378999999999999999999999999999999 8999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcc---hhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHH
Q psy15539        156 WSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEI---RGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIIC  228 (333)
Q Consensus       156 ~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~---rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~  228 (333)
                      ++++...+++++++.|++.|...+...+++++++|+++   |+.+.++++.+..+|.+++|.+++++    +|++.|++.
T Consensus        98 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~  177 (475)
T TIGR00924        98 MSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA  177 (475)
T ss_pred             hcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence            88888888899999999999999999999999998764   88899999999999999999998876    799999887


Q ss_pred             HHHHHHHHHHhhc
Q psy15539        229 ALLPIFFVGLMLL  241 (333)
Q Consensus       229 ~~~~~~~~~~~~~  241 (333)
                      ++..++.++.+++
T Consensus       178 ~~~~~~~~l~~~~  190 (475)
T TIGR00924       178 AVGMVIGLLTFFA  190 (475)
T ss_pred             HHHHHHHHHHHHH
Confidence            7655554444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG2504|consensus

Probab=99.67  E-value=2.1e-16  Score=145.16  Aligned_cols=171  Identities=12%  Similarity=0.122  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q psy15539         66 TQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAV  145 (333)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  145 (333)
                      +-|.+++...+..+........++...+.+.++   ++.+.++.+|+.++......+.+++.+.+.||+|.|.+.+.|.+
T Consensus        43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~---f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~  119 (509)
T KOG2504|consen   43 WGWVVVFASFLVNLSTDGLINSFGLLFEELMDY---FGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL  119 (509)
T ss_pred             eeeeeeHhHHHHHHhhhcchheehhhHHHHHHH---hCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence            446666666666655544455556667888888   99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHH-HHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----H
Q psy15539        146 PTLVGWGLIIWSQSVIMFCAG-RLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----S  220 (333)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~-~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~  220 (333)
                      +..++.++..++++++.+++. -++.|+|.|..+......+..+| +++|+.+.|+...+.++|..+-|.+..++    |
T Consensus       120 v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G  198 (509)
T KOG2504|consen  120 VAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG  198 (509)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC
Confidence            999999999999999887776 78999999999999888888777 57899999999999999999999988777    9


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q psy15539        221 VYGLSIICALLPIFFVGLML  240 (333)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~  240 (333)
                      ||+.+++.+.+.+-.++...
T Consensus       199 ~r~~~l~~~~~~l~~~~~~~  218 (509)
T KOG2504|consen  199 WRGALLIFGGISLNVLVAGA  218 (509)
T ss_pred             cHHHHHHHHHHHHHHHHHHH
Confidence            99999888887765444444

>KOG3764|consensus

Probab=99.67  E-value=1.8e-16  Score=135.74  Aligned_cols=142  Identities=20%  Similarity=0.204  Sum_probs=131.6

Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhh
Q psy15539        101 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVV  180 (333)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~  180 (333)
                      ..+-++++.|++.+...+...+.+++.|.+.||+|+|-.+++|++++..+++++++..+++.++++|.++|+|.+...+.
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ts  179 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTS  179 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhh
Confidence            36677789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccCCCcc-hhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhhcc
Q psy15539        181 VPMYTAEIAETEI-RGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLMLLM  242 (333)
Q Consensus       181 ~~~~~~e~~~~~~-rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  242 (333)
                      ..+++++.+|.+. |++++|+.-.+.++|.+++|++++.+    |.+.+|++.++++++-....+++
T Consensus       180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence            9999999998765 79999999999999999999999987    88999999999998865555543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.66  E-value=2.6e-15  Score=135.03  Aligned_cols=153  Identities=10%  Similarity=-0.049  Sum_probs=118.0

Q ss_pred             HHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH-HHHHHH-HH
Q psy15539         76 IGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAV-PTLVGW-GL  153 (333)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~-~~~~~~-~~  153 (333)
                      +..+......+...+.+|.+.++   +|.+..+.+++.+++.++..++++++|+++||+||+........ ...+.. ..
T Consensus        11 ~~~~~~~~~~~~~~p~l~~~l~~---~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~   87 (382)
T TIGR00902        11 LGFFGYFCAYGIFLPFFPAWLKG---IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAF   87 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence            33444444556777889999998   99999999999999999999999999999999998544322221 111222 23


Q ss_pred             HHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHH
Q psy15539        154 IIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICA  229 (333)
Q Consensus       154 ~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~  229 (333)
                      +..+++++.+++.|.+.|.+.+...+...++..++  +++|++..+....+.++|.+++|++++++    +|+..+++.+
T Consensus        88 ~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~  165 (382)
T TIGR00902        88 SAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILT  165 (382)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence            34577899999999999998888888888887654  57789999999999999999999988776    8998887766


Q ss_pred             HHHH
Q psy15539        230 LLPI  233 (333)
Q Consensus       230 ~~~~  233 (333)
                      +..+
T Consensus       166 ~~~~  169 (382)
T TIGR00902       166 AGLA  169 (382)
T ss_pred             HHHH
Confidence            5533

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.66  E-value=2.9e-15  Score=134.79  Aligned_cols=155  Identities=12%  Similarity=-0.005  Sum_probs=116.7

Q ss_pred             hhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchh----HHHHHHHHHHHHHHHHHHHHh
Q psy15539         83 TILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRK----NTMLLLAVPTLVGWGLIIWSQ  158 (333)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~~~  158 (333)
                      ...+.+.+.+|.+.++   +|.|..+.|++.+++.++..+++++.|+++||+|||    +.+.++.++.  ........+
T Consensus        18 ~~~g~~~p~l~~~l~~---~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~   92 (382)
T PRK11128         18 FAYGVFLPFWSVWLKG---QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAH   92 (382)
T ss_pred             HHHHHHhhhHHHHHHh---cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcc
Confidence            4456677888899988   999999999999999999999999999999999984    3332222221  222233457


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHH
Q psy15539        159 SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIF  234 (333)
Q Consensus       159 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~  234 (333)
                      +++.+++.|++.|++.+...+...++..++  .++|+++.+.......+|..++|++++++    +|+..+++.++..++
T Consensus        93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~  170 (382)
T PRK11128         93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVAS  170 (382)
T ss_pred             cHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Confidence            899999999999999888888877777766  35677878877877788888888888876    899988877765444


Q ss_pred             HHHHhhcccC
Q psy15539        235 FVGLMLLMPE  244 (333)
Q Consensus       235 ~~~~~~~~~e  244 (333)
                      .++..++.||
T Consensus       171 ~~~~~~~~~~  180 (382)
T PRK11128        171 MLLGQLLRPT  180 (382)
T ss_pred             HHHHHHccCC
Confidence            4443444444

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.66  E-value=4.5e-15  Score=134.19  Aligned_cols=155  Identities=14%  Similarity=0.126  Sum_probs=111.2

Q ss_pred             hhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH---HH--
Q psy15539         83 TILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII---WS--  157 (333)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~--  157 (333)
                      .......+.+|.+..+  ++|.+..+.+++.+++.++..+++++.|+++||+|||+.++.+.+..+++.....   +.  
T Consensus        16 ~~~~~~~~~~~~~~~~--~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~   93 (396)
T TIGR00882        16 FIMSAYFPFFPIWLHD--VNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPL   93 (396)
T ss_pred             HHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            3344555667777654  3899999999999999999999999999999999999999887666655443321   11  


Q ss_pred             ---hhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHH
Q psy15539        158 ---QSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA---SVYGLSIICALL  231 (333)
Q Consensus       158 ---~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~  231 (333)
                         .....+++.+++.|++.+...+....+..+..+  .++...+.......+|..+++.+++.+   +|+..|++.+++
T Consensus        94 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~  171 (396)
T TIGR00882        94 LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGF  171 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHH
Confidence               123345566888888888777777777666433  234455666666677777788777765   899999888887


Q ss_pred             HHHHHHHhhc
Q psy15539        232 PIFFVGLMLL  241 (333)
Q Consensus       232 ~~~~~~~~~~  241 (333)
                      .++..+..++
T Consensus       172 ~~~~~~~~~~  181 (396)
T TIGR00882       172 ALILMLLLMF  181 (396)
T ss_pred             HHHHHHHHHH
Confidence            7765544443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.66  E-value=6.6e-15  Score=150.27  Aligned_cols=113  Identities=14%  Similarity=0.055  Sum_probs=101.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHhhhhhhhhhhhhh
Q psy15539        107 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII---WSQSVIMFCAGRLLTGFGGGSFAVVVPM  183 (333)
Q Consensus       107 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~G~~~g~~~~~~~~  183 (333)
                      ...+++.+++.++++++++++|+++||+|||++++++.++.+++.++..   ...+++.++++|++.|++.+...+...+
T Consensus        47 ~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  126 (1146)
T PRK08633         47 ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYG  126 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHh
Confidence            4578999999999999999999999999999999988877665555443   3568899999999999999999999999


Q ss_pred             hhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        184 YTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       184 ~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      ++.|++|+++|++++++.+.+..+|.++++.+++++
T Consensus       127 ~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l  162 (1146)
T PRK08633        127 IIPELVGKENLSRANGLLEAFTIVAILAGTALFSFL  162 (1146)
T ss_pred             hhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998776

>TIGR00901 2A0125 AmpG-related permease

Probab=99.65  E-value=6.4e-15  Score=131.23  Aligned_cols=156  Identities=20%  Similarity=0.158  Sum_probs=124.1

Q ss_pred             hccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhcc-----chhHHH-HHHHHHHHHHHHHHHHH-
Q psy15539         85 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-----GRKNTM-LLLAVPTLVGWGLIIWS-  157 (333)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-----Grr~~l-~~~~~~~~~~~~~~~~~-  157 (333)
                      .+..++.+|.+.++   +|+|.++.+++... .+...+ .+++|+++||+     ||||.+ +.+.++.++...++++. 
T Consensus         4 ~~~~~~~~~~~~~~---~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~   78 (356)
T TIGR00901         4 LGLVGNTLPYWLRS---KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV   78 (356)
T ss_pred             chhHHhHHHHHHHH---cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC
Confidence            34455668889888   99999999998755 444444 99999999998     899874 56777777776666665 


Q ss_pred             --hhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----H--------HHH
Q psy15539        158 --QSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----S--------VYG  223 (333)
Q Consensus       158 --~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~--------~~~  223 (333)
                        .+.+.+....++.+++.+...+...+++.|++|+++|+.+.++...+..+|.++++.++.++    +        ||.
T Consensus        79 ~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~  158 (356)
T TIGR00901        79 PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGY  158 (356)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHH
Confidence              45566777777888888888899999999999999999999999999999999999888655    6        999


Q ss_pred             HHHHHHHHHHHHHHHhh-cccCC
Q psy15539        224 LSIICALLPIFFVGLML-LMPES  245 (333)
Q Consensus       224 ~~~~~~~~~~~~~~~~~-~~~e~  245 (333)
                      .|++.++..++.++..+ ..||+
T Consensus       159 ~f~i~ai~~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       159 IFFWTALLILPGLLVTLFLAKEP  181 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCC
Confidence            99988887766555444 34654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.65  E-value=8.6e-15  Score=149.21  Aligned_cols=140  Identities=14%  Similarity=0.086  Sum_probs=113.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhh
Q psy15539        107 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL---LAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPM  183 (333)
Q Consensus       107 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~  183 (333)
                      ...++..+++.+.++++++++|+++||+|||+++..   +.++.++..+......+++.++++|+++|++.+...+...+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a  131 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS  131 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence            346888889999999999999999999999997643   22222232333334579999999999999999999999999


Q ss_pred             hhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhhcccCCh
Q psy15539        184 YTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLMLLMPESP  246 (333)
Q Consensus       184 ~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~e~~  246 (333)
                      ++.+++|+++|++++++.+++..+|.+++|++++++    +|++.|+..++..++.+++.+++|+++
T Consensus       132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (1140)
T PRK06814        132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTG  198 (1140)
T ss_pred             hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            999999999999999999999999999999999987    788888555555555555566666653

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.63  E-value=7.8e-15  Score=140.10  Aligned_cols=138  Identities=16%  Similarity=0.086  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhccc
Q psy15539        109 LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEI  188 (333)
Q Consensus       109 ~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~  188 (333)
                      ..+...+..++.+++.++.|+++||+|||++++++.++.++++++.++.++...+++++++.|++.++..+...++++|+
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556677899999999999999999999999999999999999988888888888888899998888899999999999


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHhhcccCCh
Q psy15539        189 AETEIRGTLGTYFQLQCTAGILFVYAVGSWA---SVYGLSIICALLPIFFVGLMLLMPESP  246 (333)
Q Consensus       189 ~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~e~~  246 (333)
                      +|++.|++++|+.+....+|.+++|.+++.+   +...++++.+++.++..++.+++||+.
T Consensus       677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            9999999999999999999999999998765   345667777777777666666779874

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.62  E-value=4.9e-14  Score=127.25  Aligned_cols=162  Identities=12%  Similarity=0.163  Sum_probs=115.6

Q ss_pred             hhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHH-HHHHHHHHHHHhhhccchhHHHH-HHHHHHHHHHHHHHHHhh
Q psy15539         82 GTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMAL-GAVFGSPVVGNLVDTVGRKNTML-LLAVPTLVGWGLIIWSQS  159 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~~~  159 (333)
                      +.......+.+|.+..+  ++|.+.++.|++.+...+ +..++.++.++ +||+||||.++ .+.++.+++.++..++++
T Consensus        28 ~~~~~~~~p~~~~~l~~--~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~  104 (393)
T PRK15011         28 GIAGALQTPTLSIFLTD--EVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRN  104 (393)
T ss_pred             HHHHHHHHHHHHHHHHh--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhH
Confidence            33334455666665543  389999999999776655 55566655666 99999998754 556666677777788888


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcch--hhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHH
Q psy15539        160 VIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIR--GTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPI  233 (333)
Q Consensus       160 ~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~r--g~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~  233 (333)
                      ++.+++.+.+.|...+...+....+..++.+++.|  +...+..+.+..+|.+++|++++++    +||..|++.++..+
T Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~  184 (393)
T PRK15011        105 YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFI  184 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHH
Confidence            88877666555555556677778888887776655  3445778888889999999988766    89999988887766


Q ss_pred             HHHH-HhhcccCCh
Q psy15539        234 FFVG-LMLLMPESP  246 (333)
Q Consensus       234 ~~~~-~~~~~~e~~  246 (333)
                      +..+ ..+++||.+
T Consensus       185 ~~~~~~~~~~~~~~  198 (393)
T PRK15011        185 VCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHHHHhhcCccC
Confidence            5443 344677764

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.60  E-value=4.7e-14  Score=128.31  Aligned_cols=160  Identities=18%  Similarity=0.240  Sum_probs=120.2

Q ss_pred             hhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhh----ccchhHHHHHH-HHHHHHHHHHHHHHh
Q psy15539         84 ILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVD----TVGRKNTMLLL-AVPTLVGWGLIIWSQ  158 (333)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~~~  158 (333)
                      ......+.++.|.++   +|.+....+++..+..+..++.+++.|+++|    |+|||+.++++ .+..+++.+++++++
T Consensus        19 ~~~l~~~~l~~yl~~---lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~   95 (477)
T TIGR01301        19 GWALQLSLLTPYVQE---LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAA   95 (477)
T ss_pred             HHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCc
Confidence            334444556667777   9999999999999999999999999999999    59999998874 666666666776655


Q ss_pred             hH-----------------HHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcch--hhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        159 SV-----------------IMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIR--GTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       159 ~~-----------------~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~r--g~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      +.                 ..++++..+..++.....+...++++|.+|+++|  +.+.++.+....+|.++++.+++..
T Consensus        96 ~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~  175 (477)
T TIGR01301        96 DIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS  175 (477)
T ss_pred             hhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43                 2233334455567777888889999999998876  5788888888899999998887653


Q ss_pred             -------------------HHHHHHHHHHHHHHHH-HHHhhcccCCh
Q psy15539        220 -------------------SVYGLSIICALLPIFF-VGLMLLMPESP  246 (333)
Q Consensus       220 -------------------~~~~~~~~~~~~~~~~-~~~~~~~~e~~  246 (333)
                                         +.+..|++.+++.++. ++..++.+|.|
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       176 GLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             hHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence                               3456777776666654 44455778865

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.60  E-value=8.8e-15  Score=111.79  Aligned_cols=132  Identities=25%  Similarity=0.301  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCc
Q psy15539        113 GSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETE  192 (333)
Q Consensus       113 ~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~  192 (333)
                      .+.+.++..++.++.|++.||+|||+.+..+..+..++.++..+.++.+.+.+.+++.|++.+...+....++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            34567788999999999999999999999999999999888888889999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhh-cccC
Q psy15539        193 IRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLML-LMPE  244 (333)
Q Consensus       193 ~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~e  244 (333)
                      +|++..++.+....+|..+++.+.+++    +|++.+++.+++.++..+..+ +.||
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            999999999999999999999998877    788888887777666544433 4444

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.60  E-value=2.4e-14  Score=130.76  Aligned_cols=155  Identities=14%  Similarity=-0.006  Sum_probs=120.1

Q ss_pred             hhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHHHHHHHHHh-hH
Q psy15539         83 TILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-GRKNTMLLLAVPTLVGWGLIIWSQ-SV  160 (333)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~  160 (333)
                      +..+.....+|.+..+  ++|+++.+.+.+.+.+.....++.+++|+++||+ |||+.++++.++.+++.+++.... +.
T Consensus        23 fs~Yg~~~~L~~yL~~--~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~  100 (493)
T PRK15462         23 FSFYGMRALLILYLTN--QLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHP  100 (493)
T ss_pred             HHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcch
Confidence            3333444556667654  3899999999999999999999999999999999 999999999999999987776543 22


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhcccCCCc--chhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHH
Q psy15539        161 IMFCAGRLLTGFGGGSFAVVVPMYTAEIAETE--IRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIF  234 (333)
Q Consensus       161 ~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~--~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~  234 (333)
                      ..+.++..+.++|.|...+...++++|.+|++  +|..+.++...+..+|..++|.+.+++    +|++.|.+.++..++
T Consensus       101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l  180 (493)
T PRK15462        101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA  180 (493)
T ss_pred             hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHH
Confidence            33444444455666666677788999999876  799999998888889999999999887    799999887665544


Q ss_pred             HHHHh
Q psy15539        235 FVGLM  239 (333)
Q Consensus       235 ~~~~~  239 (333)
                      .++.+
T Consensus       181 ~li~~  185 (493)
T PRK15462        181 GLVIF  185 (493)
T ss_pred             HHHHH
Confidence            44433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.60  E-value=2.3e-14  Score=132.92  Aligned_cols=151  Identities=16%  Similarity=0.118  Sum_probs=119.7

Q ss_pred             hhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHHHHHHh-hH
Q psy15539         83 TILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTLVGWGLIIWSQ-SV  160 (333)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~-~~  160 (333)
                      ...+.....++.+..+  ++|.+..+.+++.+.+........+++|+++|| +|||+.++++.++.+++.++++++. +.
T Consensus        35 ~~~y~~~~~l~~yl~~--~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~  112 (500)
T PRK09584         35 FGYYGLQGIMAVYLVK--QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDA  112 (500)
T ss_pred             HHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccH
Confidence            3333344445556533  389999888888888776666667889999999 5999999999999999988888864 45


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcc--hhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHH
Q psy15539        161 IMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEI--RGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIF  234 (333)
Q Consensus       161 ~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~--rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~  234 (333)
                      ..+++++++.|++.|...+...+++.|++|++.  |..+.++++.+..+|..++|.+++++    +|++.|++.++..++
T Consensus       113 ~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i  192 (500)
T PRK09584        113 GIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI  192 (500)
T ss_pred             HHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            667788999999999888888899999998654  44577888899999999999998877    899999887765444


Q ss_pred             H
Q psy15539        235 F  235 (333)
Q Consensus       235 ~  235 (333)
                      .
T Consensus       193 ~  193 (500)
T PRK09584        193 T  193 (500)
T ss_pred             H
Confidence            3

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.58  E-value=3.9e-14  Score=129.10  Aligned_cols=155  Identities=14%  Similarity=0.033  Sum_probs=100.0

Q ss_pred             ccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH---HHhhHH-
Q psy15539         86 GWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII---WSQSVI-  161 (333)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~-  161 (333)
                      +...+.+|.+..+  ++|++..+.|++.+++.++..+++++.|+++||+|||++++++..+.+++.....   ..+... 
T Consensus        27 ~~~~~~~~~~l~~--~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (420)
T PRK09528         27 SSWFSFFPIWLHD--INGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQY  104 (420)
T ss_pred             HHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666554  3899999999999999999999999999999999999999887666554433221   111111 


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhcccCC--CcchhhHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHH
Q psy15539        162 MFCAGRLLTGFGGGSFAVVVPMYTAEIAE--TEIRGTLGTYFQLQCTAGILFVYAVGSWA---SVYGLSIICALLPIFFV  236 (333)
Q Consensus       162 ~~~~~~~l~G~~~g~~~~~~~~~~~e~~~--~~~rg~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  236 (333)
                      ......++.++..+.........+.++.+  .++++...+.......+|..+++.+++++   +|+..|++.++++++.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~  184 (420)
T PRK09528        105 NILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILL  184 (420)
T ss_pred             HHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHH
Confidence            01111222233222222222222223322  24566677777788888888888888776   78888888877776655


Q ss_pred             HHhhcc
Q psy15539        237 GLMLLM  242 (333)
Q Consensus       237 ~~~~~~  242 (333)
                      +..+++
T Consensus       185 ~~~~~~  190 (420)
T PRK09528        185 VLLFFA  190 (420)
T ss_pred             HHHhcc
Confidence            555544

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.56  E-value=1.7e-13  Score=123.69  Aligned_cols=152  Identities=12%  Similarity=0.105  Sum_probs=120.3

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLL  169 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  169 (333)
                      ...|.+.++  ++|.+..+.+++.+...++.+++.++.|+++||+|||+.+..+.+...+........++.+.+++.+++
T Consensus       237 ~~~p~~l~~--~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  314 (393)
T PRK15011        237 INMPLFIIN--ELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLL  314 (393)
T ss_pred             HHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            346656543  278888899988888788888899999999999999998887766666555555556677777788888


Q ss_pred             HhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhhcccC
Q psy15539        170 TGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLMLLMPE  244 (333)
Q Consensus       170 ~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~e  244 (333)
                      .+++.|...+....+..|.+|+ +||++.++++....+|..+++.+++.+    +|+..+++.+++.++.++..++.||
T Consensus       315 ~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        315 NAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            8888777777777888899885 599999998888888999998888776    7888888888777777766666654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.55  E-value=1.6e-13  Score=124.51  Aligned_cols=149  Identities=16%  Similarity=0.110  Sum_probs=122.1

Q ss_pred             hhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy15539         91 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLT  170 (333)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  170 (333)
                      ..|.+.++   .|.+..+.+.+.+...++..++.++.|++.||+|||+.+..+.+...++.++..+.++.+.+.+..++.
T Consensus       242 ~~p~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (406)
T PRK11551        242 WLPSLLVG---QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAA  318 (406)
T ss_pred             HHHHHHHh---CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            46777777   899999999999999999999999999999999999998887777777766666677777777788888


Q ss_pred             hhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHhhcc
Q psy15539        171 GFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-----SVYGLSIICALLPIFFVGLMLLM  242 (333)
Q Consensus       171 G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  242 (333)
                      |++.++..+...+++.|.+|++.|+++.++.+....+|..++|.+.+++     +|...++..+...++.++..++.
T Consensus       319 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        319 GLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            9888888888899999999999999999999999999999999998877     44555555555554444444433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.54  E-value=1.1e-13  Score=123.65  Aligned_cols=141  Identities=17%  Similarity=0.139  Sum_probs=117.9

Q ss_pred             hhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHH
Q psy15539         92 GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS--VIMFCAGRLL  169 (333)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l  169 (333)
                      .+.+.++   ++.++.+.+++.+...++..++.++.|++.||+|||+.+.++.++.+++.++..+.++  ...+++..++
T Consensus       228 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (377)
T TIGR00890       228 YKPYGQS---LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVAL  304 (377)
T ss_pred             HHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Confidence            4455566   7888888999999999999999999999999999999999998888888877766553  2334456778


Q ss_pred             HhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHH
Q psy15539        170 TGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFF  235 (333)
Q Consensus       170 ~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~  235 (333)
                      .|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+++    +|++.+++.+++.++.
T Consensus       305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            88888888888888999999999999999999999999999999988766    7888888777666554

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.53  E-value=1e-13  Score=126.91  Aligned_cols=151  Identities=15%  Similarity=0.128  Sum_probs=113.7

Q ss_pred             hhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhc----cchhH-HHHHHHHHHHHHHHHHHHHhh------H
Q psy15539         92 GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDT----VGRKN-TMLLLAVPTLVGWGLIIWSQS------V  160 (333)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~  160 (333)
                      .+.+.++   +|+++.+.|++.++..+..++..++.|+++||    +|||| .++++.+..+++.+++.+.++      .
T Consensus        23 ~~~~~~~---~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (437)
T TIGR00792        23 LFFYTDV---LGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL   99 (437)
T ss_pred             HHHHHHc---cCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence            3444455   89999999999999999999999999999997    67755 566788888888877776543      4


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhcccC-CCcchhhHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHH
Q psy15539        161 IMFCAGRLLTGFGGGSFAVVVPMYTAEIA-ETEIRGTLGTYFQLQCTAGILFVYAVGSW-----------ASVYGLSIIC  228 (333)
Q Consensus       161 ~~~~~~~~l~G~~~g~~~~~~~~~~~e~~-~~~~rg~~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~~~  228 (333)
                      ..+++.+++.+++.+.......++..|.. ++++|++..++.+.+..+|.++++.+...           .+|++.+++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~  179 (437)
T TIGR00792       100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVL  179 (437)
T ss_pred             HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence            56667778888888877777788888887 57889999998887777776655443221           2688888888


Q ss_pred             HHHHHHHHHH-hhcccCC
Q psy15539        229 ALLPIFFVGL-MLLMPES  245 (333)
Q Consensus       229 ~~~~~~~~~~-~~~~~e~  245 (333)
                      +++.++..+. .++.+|+
T Consensus       180 ~~l~~~~~~~~~~~~~e~  197 (437)
T TIGR00792       180 ALIGVVSLIICFFGTKER  197 (437)
T ss_pred             HHHHHHHHHHHHcCCEec
Confidence            8777665443 4456664

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.53  E-value=8.6e-14  Score=126.84  Aligned_cols=144  Identities=15%  Similarity=0.120  Sum_probs=119.9

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhh
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVV  181 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~  181 (333)
                      .+.+..+.+++.++..++..++.+++|++.||+|+|+.+.++.++.+++.++.++.++.+.+++.+++.|++.+...+..
T Consensus       257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~  336 (420)
T PRK09528        257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV  336 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566778999999999999999999999999999999999999999888888888898888899999999988877788


Q ss_pred             hhhhcccCCCcchhhHHHH-HHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHH-hhcccCC
Q psy15539        182 PMYTAEIAETEIRGTLGTY-FQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGL-MLLMPES  245 (333)
Q Consensus       182 ~~~~~e~~~~~~rg~~~~~-~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~e~  245 (333)
                      ..++.|.+|++.|++..+. ++....+|.++++.+.+++    ||+..|.+.+++.++..+. .+..++.
T Consensus       337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            8899999999999887665 6777888999988888877    7888888877776654433 3344443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.53  E-value=9.4e-13  Score=112.19  Aligned_cols=220  Identities=15%  Similarity=0.131  Sum_probs=171.3

Q ss_pred             HHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q psy15539         68 YMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPT  147 (333)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  147 (333)
                      +..+..+.+..+..-...+.+++.++.+.++   +|.|.+..|+++++..+...+.+++..+++.|+|.++.+.+++++.
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~---~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli   87 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQD---LGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLI   87 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHH---hcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHH
Confidence            4445555555555666677888899999998   9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH-----HHH
Q psy15539        148 LVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-----SVY  222 (333)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-----~~~  222 (333)
                      +++.++-... +...++.+-.+.|.+.+......+..+.+.||++ -+..+++|....++|..+++.+...+     +|+
T Consensus        88 ~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~  165 (395)
T COG2807          88 AAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWR  165 (395)
T ss_pred             HHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHH
Confidence            9999998877 7788899999999999999999999999999854 58889998888888777766665444     799


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhccCccchHhhhcChhh
Q psy15539        223 GLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAA  302 (333)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (333)
                      ....+-+.++++.++.++  |...+.     +                            ......+..+...++|+|. 
T Consensus       166 ~aL~~WAl~allAl~~Wl--Pq~~r~-----~----------------------------~~~~~~~~~~~~~vw~~~~-  209 (395)
T COG2807         166 GALGFWALLALLALLIWL--PQALRE-----Q----------------------------AASIATKLVSVRKVWRSPL-  209 (395)
T ss_pred             HHHHHHHHHHHHHHHHHh--hhcccc-----c----------------------------ccccccccccccccccCch-
Confidence            998888888887766654  321110     0                            0011112222345788874 


Q ss_pred             HHHHHHHHHHHHHHhhcchhhhhhchhccc
Q psy15539        303 KRGLLIGLGVMFIQQFGGINAVVFYTVKIF  332 (333)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~  332 (333)
                          -+-+.+++..+...++.+..|+|.++
T Consensus       210 ----aW~vtLfmGlqS~~~Y~~~~WLP~il  235 (395)
T COG2807         210 ----AWQVTLFMGLQSLLYYIVIGWLPAIL  235 (395)
T ss_pred             ----hHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence                44466677777777788999999875

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.52  E-value=5.5e-13  Score=120.67  Aligned_cols=149  Identities=15%  Similarity=0.111  Sum_probs=120.9

Q ss_pred             hhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy15539         91 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLT  170 (333)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  170 (333)
                      .+|.+..+   .+.+  ..++..+.+.++..++.++.|++.||+|+|+.+..+.++.+++.++..+.++.+.+++..++.
T Consensus       238 ~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (399)
T PRK05122        238 FITLYYAA---RGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALT  312 (399)
T ss_pred             HHHHHHHH---cccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            34545544   4442  456667788889999999999999999999999988888888888877778888888889999


Q ss_pred             hhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhhcccC
Q psy15539        171 GFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLMLLMPE  244 (333)
Q Consensus       171 G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~e  244 (333)
                      |++.+..++.....+.|.+|+++||++.++++....+|..+++.+.+++    +|+..+++.+++.++.++..+++++
T Consensus       313 G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        313 GFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999988888888888999999999999999999999988888777666    7888888888777776655554444

>TIGR00889 2A0110 nucleoside transporter

Probab=99.52  E-value=1.4e-13  Score=125.07  Aligned_cols=140  Identities=16%  Similarity=0.187  Sum_probs=116.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHhhhhhhhhhhh
Q psy15539        106 ESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ----SVIMFCAGRLLTGFGGGSFAVVV  181 (333)
Q Consensus       106 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~G~~~g~~~~~~  181 (333)
                      .+..+...++..++..++.++.|+++||+|||+++.++.++.+++..+.....    +.+.+++..++.|++.+...+..
T Consensus       250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~  329 (418)
T TIGR00889       250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISG  329 (418)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678889999999999999999999999999999999998888876666532    24566778999999999888888


Q ss_pred             hhhhcccCCCcchhhHHHHHH-HHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHHHH-HHHhhcccCC
Q psy15539        182 PMYTAEIAETEIRGTLGTYFQ-LQCTAGILFVYAVGSWA----------SVYGLSIICALLPIFF-VGLMLLMPES  245 (333)
Q Consensus       182 ~~~~~e~~~~~~rg~~~~~~~-~~~~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~~~~~~~~e~  245 (333)
                      ..++.|.+|++.|+++.++.+ ...++|.+++|.+++++          +|+..|++.+++.++. ++..++++|+
T Consensus       330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            899999999999999999986 67889999999998876          2788888877776654 4445566766

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.52  E-value=4.6e-13  Score=118.45  Aligned_cols=153  Identities=22%  Similarity=0.262  Sum_probs=134.6

Q ss_pred             cchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhH-HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy15539         87 WTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKN-TMLLLAVPTLVGWGLIIWSQSVIMFCA  165 (333)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      ......|.+.++  .+|.++.+.+++.+...++..++.++.+++.||+|||+ .+.++.++..++.+.....++.+.+.+
T Consensus       193 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  270 (352)
T cd06174         193 GLLTYLPLYLQE--VLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLV  270 (352)
T ss_pred             HHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            333446666665  24888899999999999999999999999999999999 999999999999999988888888999


Q ss_pred             HHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhhc
Q psy15539        166 GRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLMLL  241 (333)
Q Consensus       166 ~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  241 (333)
                      ..++.|++.+...+....++.|..|+++|++..++.+....+|..+++.+.+.+    +|+..+++.+++.++..+..++
T Consensus       271 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         271 ALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             HHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence            999999999999999999999999999999999999999999999999998877    7888888888887776655543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09952 shikimate transporter; Provisional

Probab=99.49  E-value=1.6e-12  Score=119.15  Aligned_cols=153  Identities=13%  Similarity=0.027  Sum_probs=110.7

Q ss_pred             hhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH---H-hhHHHHHHH
Q psy15539         91 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW---S-QSVIMFCAG  166 (333)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~-~~~~~~~~~  166 (333)
                      ..|.+..+  .+|.+......+.....+..+++.++.|+++||+|||+.+..+.++.+++.+.+..   . .+...+++.
T Consensus       272 ~~~~y~~~--~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (438)
T PRK09952        272 FALNYSTQ--NLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFS  349 (438)
T ss_pred             HHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34555543  27777766555566667777889999999999999999988887766555443322   1 233444455


Q ss_pred             HHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHH-HHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHh
Q psy15539        167 RLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTY-FQLQCTAGILFVYAVGSWA------SVYGLSIICALLPIFFVGLM  239 (333)
Q Consensus       167 ~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~-~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  239 (333)
                      .++.|++.+...+..++++.|.+|++.|+++.++ ++.+..+|+.++|.+.+++      +|...+.+.++++++..+..
T Consensus       350 ~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~  429 (438)
T PRK09952        350 IMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA  429 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence            6667888887788889999999999999999888 5556668888899888776      36777777777777766666


Q ss_pred             hcccCC
Q psy15539        240 LLMPES  245 (333)
Q Consensus       240 ~~~~e~  245 (333)
                      +.++|+
T Consensus       430 ~~~~~~  435 (438)
T PRK09952        430 LLMKDN  435 (438)
T ss_pred             HHcccc
Confidence            666654

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.47  E-value=2e-12  Score=115.82  Aligned_cols=149  Identities=17%  Similarity=0.133  Sum_probs=119.7

Q ss_pred             hhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy15539         92 GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTG  171 (333)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  171 (333)
                      +|.+..+  ++|.++.+.+++.+...+...++.++.|++.||+|||+.+.++.++..+..+...+.++.+.+++.+++.|
T Consensus       222 ~~~~~~~--~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  299 (375)
T TIGR00899       222 MPLLIIH--ELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNA  299 (375)
T ss_pred             hHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4545432  27888888998888877778888999999999999999998887776666666666677887888889999


Q ss_pred             hhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhhccc
Q psy15539        172 FGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLMLLMP  243 (333)
Q Consensus       172 ~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  243 (333)
                      ++.+...+....++.|..|+ +|+++.++++....+|..++|.+++++    +|+..+++.+++.++..+..++++
T Consensus       300 ~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  374 (375)
T TIGR00899       300 IFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIK  374 (375)
T ss_pred             HHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheec
Confidence            99888888888888998875 567999999888889999999988776    788888888877777666665554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK12382 putative transporter; Provisional

Probab=99.47  E-value=2.4e-12  Score=116.25  Aligned_cols=145  Identities=13%  Similarity=0.051  Sum_probs=119.9

Q ss_pred             hhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy15539         91 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLT  170 (333)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  170 (333)
                      ..|.+.++   .+.+  ..++..+.+.++..++.++.|++.||+|+|+.+.++..+.+++.++..+.++.+.++++.++.
T Consensus       238 ~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (392)
T PRK12382        238 FVSLYFAS---KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALT  312 (392)
T ss_pred             HHHHHHHh---cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            34555555   4544  345666777888899999999999999999999999888888888877778888888889999


Q ss_pred             hhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhh
Q psy15539        171 GFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLML  240 (333)
Q Consensus       171 G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  240 (333)
                      |++.+...+...+.+.|.+|+++||++.++++....+|..++|.+.+++    +|+..+.+.+++.++..+..+
T Consensus       313 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        313 GAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            9999888888888889999999999999999999999999999888876    788888888877776554443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.46  E-value=2e-12  Score=117.55  Aligned_cols=152  Identities=11%  Similarity=-0.003  Sum_probs=103.3

Q ss_pred             hccchhhh-hhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy15539         85 LGWTSPAG-DRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR-KNTMLLLAVPTLVGWGLIIWSQSVIM  162 (333)
Q Consensus        85 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~  162 (333)
                      .+...+.+ +.+.++   +|.+..+.|++.+++.++..+++++.|.++||+|| |+++.++.++.+++..+..+.++++.
T Consensus        18 ~~~~~~~l~~~l~~~---~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~   94 (418)
T TIGR00889        18 WGSWLVTLGSYMSKT---LHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAG   94 (418)
T ss_pred             HHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            33443443 444455   89999999999999999999999999999999965 77888888888888888888888999


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhh----c----ccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHH
Q psy15539        163 FCAGRLLTGFGGGSFAVVVPMYT----A----EIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICAL  230 (333)
Q Consensus       163 ~~~~~~l~G~~~g~~~~~~~~~~----~----e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~  230 (333)
                      +++.+++.|++.+...+...+..    .    |......|.+..|.      +|.++++.+++.+    .|. ++++.++
T Consensus        95 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~------lG~~ig~~l~g~l~~~~~~~-~f~~~~~  167 (418)
T TIGR00889        95 MFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT------IGFIAAMWAVSLLDIELSNI-QLYITAG  167 (418)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh------HHHHHHHHHHHHhcccchhH-HHHHHHH
Confidence            99999999987665555444332    2    22222334444442      3444455554444    233 3455555


Q ss_pred             HHHHHHHHhhcccCCh
Q psy15539        231 LPIFFVGLMLLMPESP  246 (333)
Q Consensus       231 ~~~~~~~~~~~~~e~~  246 (333)
                      ..++.++..+++||+|
T Consensus       168 ~~~~~~~~~~~~~e~~  183 (418)
T TIGR00889       168 SSALLGVFALTLPDIP  183 (418)
T ss_pred             HHHHHHHHHhcCCCCC
Confidence            5555444556778765

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.45  E-value=5.8e-12  Score=113.35  Aligned_cols=145  Identities=12%  Similarity=0.084  Sum_probs=124.1

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLL  169 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  169 (333)
                      ...|.+.++   .|.+..+.+.+.+...++..++.++.+++.||+|+|+.+.++.++.++..++.++.++.+.+++..++
T Consensus       226 ~~~~~~l~~---~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l  302 (382)
T TIGR00902       226 GFSAIYWQA---AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQIL  302 (382)
T ss_pred             HHHHHHHHH---CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Confidence            345667777   89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhhhhhhhhhcccCCCcchhhHHHHHH-HHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHh
Q psy15539        170 TGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQ-LQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLM  239 (333)
Q Consensus       170 ~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~-~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  239 (333)
                      .|++.+...+....++.+. |++.|+++.++++ ...++|.++++.+++++    ++ ..|.+.++++++.++..
T Consensus       303 ~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       303 HCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence            9999999999999999988 9999999999976 57788999999998887    43 34555555555544333

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.45  E-value=8.8e-15  Score=135.60  Aligned_cols=244  Identities=14%  Similarity=0.127  Sum_probs=3.0

Q ss_pred             hhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH--
Q psy15539         80 IMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS--  157 (333)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--  157 (333)
                      ......++....++++.+.   ++++.++.|++.+.+-++..+..++..++.+|..|.+.+-+|.++.+++++++++-  
T Consensus        14 ~q~~~~g~~~~~lttiErR---F~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf   90 (539)
T PF03137_consen   14 FQMMVSGYVNSSLTTIERR---FGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHF   90 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHh
Confidence            3355566777778888888   99999999999999999999999999999999999999999999999999887641  


Q ss_pred             ----------h--------------------------------------hHHHHHHHHHHHhhhhhhhhhhhhhhhcccC
Q psy15539        158 ----------Q--------------------------------------SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIA  189 (333)
Q Consensus       158 ----------~--------------------------------------~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~  189 (333)
                                .                                      -+..++++.++.|+|....+++..+|+-|..
T Consensus        91 ~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv  170 (539)
T PF03137_consen   91 LSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNV  170 (539)
T ss_dssp             -------------------------------------------------------------SSS----------------
T ss_pred             hcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccc
Confidence                      0                                      0246778899999999999999999999999


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHhHHH--------------------------HHHHHHHHHHHHHHHHHHHhhccc
Q psy15539        190 ETEIRGTLGTYFQLQCTAGILFVYAVGSWA--------------------------SVYGLSIICALLPIFFVGLMLLMP  243 (333)
Q Consensus       190 ~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~  243 (333)
                      +++.-+.+.|+......+|.++|.++++..                          .|+.-|++.+++.++..+.++++|
T Consensus       171 ~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FP  250 (539)
T PF03137_consen  171 SKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFP  250 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999988887532                          377777777777777666667777


Q ss_pred             CChHHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhccCccchHhhhcChhhHHHHHHHHHHHHHHhhcchhh
Q psy15539        244 ESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINA  323 (333)
Q Consensus       244 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (333)
                      +.-....+..+.++.++  .+....+.+..++.++.+...+..+.-....+++++||     +++...+..........+
T Consensus       251 k~lp~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np-----~f~~~~la~~~~~~~~~G  323 (539)
T PF03137_consen  251 KKLPGTSERQEEKESSE--RKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNP-----VFMCLILAGVFESFIVSG  323 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCcccccchhhhhh--cchhhhhhhcccccccccchhhhhhhHHHHHHHHhcCh-----HHHHHHHHHHHHHHHHHH
Confidence            54321100000000000  00000000000000000000000111123455666666     466666666667777788


Q ss_pred             hhhchhcccC
Q psy15539        324 VVFYTVKIFK  333 (333)
Q Consensus       324 ~~~y~~~~~~  333 (333)
                      +..|+|.|+|
T Consensus       324 ~~tF~pKylE  333 (539)
T PF03137_consen  324 FATFLPKYLE  333 (539)
T ss_dssp             ----------
T ss_pred             HHHHHHHHHH
Confidence            9999999986

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.44  E-value=8.6e-12  Score=112.57  Aligned_cols=171  Identities=11%  Similarity=-0.034  Sum_probs=123.0

Q ss_pred             HHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHH--HHHHHHHHHHHHHHH-HHhhhccchhHHHHHHHHHH
Q psy15539         71 ALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFI--GSSMALGAVFGSPVV-GNLVDTVGRKNTMLLLAVPT  147 (333)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~-g~l~dr~Grr~~l~~~~~~~  147 (333)
                      .+.+...++..|...+...+.+|.+.++   .|.+.++.|++  .++..+..++.+++. ++..||+||||..++...+.
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~---~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~   79 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLRE---DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCL   79 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHH
Confidence            3455566677888888888999999999   89999999997  366688888888888 55799999999876655332


Q ss_pred             -HHHHHHHH---HHhh-HHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH---
Q psy15539        148 -LVGWGLII---WSQS-VIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA---  219 (333)
Q Consensus       148 -~~~~~~~~---~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~---  219 (333)
                       ++......   ...+ ...++...++.++..+...+....+..|..++++++...+....+..+|.++++....++   
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~  159 (390)
T TIGR02718        80 VSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK  159 (390)
T ss_pred             HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             22222222   1222 233344455566667777777777888988888888888888888888888888655443   


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhhcccC
Q psy15539        220 -SVYGLSIICALLPIFFVGLMLLMPE  244 (333)
Q Consensus       220 -~~~~~~~~~~~~~~~~~~~~~~~~e  244 (333)
                       +|+..|++.+++.++..+..++++|
T Consensus       160 ~gw~~~f~~~a~l~~~~~~~~~~~~~  185 (390)
T TIGR02718       160 FGQRPAFLLVACVPLASLVCVLWLKD  185 (390)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence             9999999998887765555554443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.44  E-value=1.3e-12  Score=118.45  Aligned_cols=132  Identities=17%  Similarity=0.187  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhccc
Q psy15539        109 LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEI  188 (333)
Q Consensus       109 ~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~  188 (333)
                      .+.+.++..++..++.++.|++.||+|||+.+..+.++..++.+...+.++.+.+++.+++.|++.+...+...+.+.+.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            45566677788889999999999999999999998888888777777777888888899999999999999888888899


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhh
Q psy15539        189 AETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLML  240 (333)
Q Consensus       189 ~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  240 (333)
                      .|++.||+..++.+....+|..++|.+++++    +|+..|++.+++.++..+..+
T Consensus       340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998876    788888888877776554443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.44  E-value=4.5e-12  Score=117.14  Aligned_cols=151  Identities=15%  Similarity=0.042  Sum_probs=107.5

Q ss_pred             chhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH--HHHhhHHHHHH
Q psy15539         88 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI--IWSQSVIMFCA  165 (333)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~--~~~~~~~~~~~  165 (333)
                      ....+|.|.++  .+|.+..+.++..+...++..++.++.|+++||+|||+.++.+..+..++..+.  ....+.....+
T Consensus       277 ~~~~~p~yl~~--~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (467)
T PRK09556        277 IDNWSPVYAFQ--ELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLA  354 (467)
T ss_pred             HHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            34446766643  389999999999999999999999999999999999988766544444333222  23345556667


Q ss_pred             HHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHH-HHHHHHHHhHHH----------------HHHHHHHHH
Q psy15539        166 GRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTA-GILFVYAVGSWA----------------SVYGLSIIC  228 (333)
Q Consensus       166 ~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~-g~~~~~~~~~~~----------------~~~~~~~~~  228 (333)
                      .+++.|++..+..........|.+|++.||++.|+.+....+ |..++|.+.+++                +|+..|++.
T Consensus       355 ~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~  434 (467)
T PRK09556        355 SLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAAL  434 (467)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHH
Confidence            788888654433333345677999999999999998877775 666776665544                388888877


Q ss_pred             HHHHHHHHHHhh
Q psy15539        229 ALLPIFFVGLML  240 (333)
Q Consensus       229 ~~~~~~~~~~~~  240 (333)
                      +++.++..+..+
T Consensus       435 ~~~~~~~~~~~~  446 (467)
T PRK09556        435 DIAAIGCICLMA  446 (467)
T ss_pred             HHHHHHHHHHHH
Confidence            666666544444

>KOG3626|consensus

Probab=99.43  E-value=6.8e-13  Score=123.68  Aligned_cols=248  Identities=15%  Similarity=0.165  Sum_probs=178.9

Q ss_pred             HHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Q psy15539         70 AALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLV  149 (333)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~  149 (333)
                      .+.+.++..+..++..+++...+.++.+.   ++++.++.|++.+.+-++..+...+..++.-|..|.+.+-+|.+++++
T Consensus        98 fl~~l~~~~~~q~l~~~y~~s~IttiErR---F~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen   98 FLVLLSLAAFAQGLYVGYFNSVITTIERR---FKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL  174 (735)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhh---cCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence            34444555566666667777778888887   999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH--------------------h--------------------------------hHHHHHHHHHHHhhhhhhh
Q psy15539        150 GWGLIIWS--------------------Q--------------------------------SVIMFCAGRLLTGFGGGSF  177 (333)
Q Consensus       150 ~~~~~~~~--------------------~--------------------------------~~~~~~~~~~l~G~~~g~~  177 (333)
                      +++++++-                    +                                -+..++++.++.|+|....
T Consensus       175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi  254 (735)
T KOG3626|consen  175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI  254 (735)
T ss_pred             HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence            99988651                    0                                0225667799999999999


Q ss_pred             hhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH-----------------------HHHHHHHHHHHHHHH
Q psy15539        178 AVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-----------------------SVYGLSIICALLPIF  234 (333)
Q Consensus       178 ~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~  234 (333)
                      ++...+|+-|...+++-+..+|+......+|.++|.++++..                       .|+.-|++++.+.++
T Consensus       255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~  334 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF  334 (735)
T ss_pred             ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998654                       578888888888888


Q ss_pred             HHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhccCccchHhhhcChhhHHHHHHHHHHHH
Q psy15539        235 FVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMF  314 (333)
Q Consensus       235 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (333)
                      ..+.++++|.......++   .++    .+.+..+++.. ..++.....++-+.-...++++++||     +++.+++..
T Consensus       335 ~a~p~f~fPk~lp~~~~~---~~~----~~~~~~k~~~~-~~~~~~~~~~~ikdfp~s~~~ll~N~-----if~~~~l~~  401 (735)
T KOG3626|consen  335 SAVPLFFFPKELPKSQKR---KRA----RDLHVLKTESG-GAKSDKTFGKKIKDFPKSIKRLLSNP-----IFMLVVLAS  401 (735)
T ss_pred             HHHHHHhCcccCcccccc---chh----hhhcccccccc-cccCCcchhhhHHHHHHHHHHHhcCc-----hHHHHHHHH
Confidence            888888888654321111   000    00000000000 00000000000001123567788887     355566666


Q ss_pred             HHhhcchhhhhhchhcccC
Q psy15539        315 IQQFGGINAVVFYTVKIFK  333 (333)
Q Consensus       315 ~~~~~~~~~~~~y~~~~~~  333 (333)
                      ......+.++..|+|.|+|
T Consensus       402 ~~~~~~~~G~~tFlPKyLE  420 (735)
T KOG3626|consen  402 VIESLAITGYITFLPKYLE  420 (735)
T ss_pred             HHHHHHHhhHHHhhHHHHH
Confidence            6667778899999999875

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.43  E-value=3.8e-12  Score=117.50  Aligned_cols=157  Identities=14%  Similarity=0.003  Sum_probs=116.6

Q ss_pred             cchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH-----h---
Q psy15539         87 WTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS-----Q---  158 (333)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~---  158 (333)
                      ......|.+.++   .|.+..+.++......++.+++.++.|+++||+|||+.+.++.++.+++.++..+.     .   
T Consensus       302 ~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (481)
T TIGR00879       302 AIMYYSPTIFEN---AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS  378 (481)
T ss_pred             ehHHHHHHHHHH---cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence            334456777777   88888888999999999999999999999999999999999888877776666521     1   


Q ss_pred             ---hHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHH
Q psy15539        159 ---SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALL  231 (333)
Q Consensus       159 ---~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~  231 (333)
                         +...+....++.+....+..+....++.|.+|++.|+++.++.+....+|.++++.+.+++    +|++.|++.+++
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~  458 (481)
T TIGR00879       379 KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGL  458 (481)
T ss_pred             cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHH
Confidence               2222233333333322334466677789999999999999999999999999999887765    678888887777


Q ss_pred             HHHHHHHh-hcccCCh
Q psy15539        232 PIFFVGLM-LLMPESP  246 (333)
Q Consensus       232 ~~~~~~~~-~~~~e~~  246 (333)
                      +++..+.. ++.||++
T Consensus       459 ~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       459 NVLGLIFVYFFLPETK  474 (481)
T ss_pred             HHHHHHHHheecccCC
Confidence            76654444 4566653

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.42  E-value=5.5e-12  Score=113.33  Aligned_cols=150  Identities=14%  Similarity=0.001  Sum_probs=104.9

Q ss_pred             cchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHH--HHHHH------HHHHHHHHHHHHHh
Q psy15539         87 WTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNT--MLLLA------VPTLVGWGLIIWSQ  158 (333)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~--l~~~~------~~~~~~~~~~~~~~  158 (333)
                      ......|.+..+  .+|.+..+.+++.+...++..++.++.|+++||+|||+.  .....      ++..+........+
T Consensus       233 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (399)
T TIGR00893       233 FFLTWFPTYLVQ--ERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVN  310 (399)
T ss_pred             HHHHHHHHHHHH--HhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccch
Confidence            333445666544  278888899999999999999999999999999999962  11111      11111111111122


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----H-HHHHHHHHHHHHH
Q psy15539        159 SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----S-VYGLSIICALLPI  233 (333)
Q Consensus       159 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~-~~~~~~~~~~~~~  233 (333)
                      +....+...++.+++.+ ..+...+++.|.+|++.|+++.++.+....+|..++|.+.+++    + |+..+++.+++.+
T Consensus       311 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~  389 (399)
T TIGR00893       311 IPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALAL  389 (399)
T ss_pred             hHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHH
Confidence            33333333444444444 7888999999999999999999999999999999999998877    5 8888887777766


Q ss_pred             HHHHHh
Q psy15539        234 FFVGLM  239 (333)
Q Consensus       234 ~~~~~~  239 (333)
                      +..+..
T Consensus       390 ~~~~~~  395 (399)
T TIGR00893       390 IGALSY  395 (399)
T ss_pred             HHHHHH
Confidence            654443

>TIGR00897 2A0118 polyol permease family

Probab=99.42  E-value=9.3e-12  Score=112.79  Aligned_cols=148  Identities=14%  Similarity=0.070  Sum_probs=111.4

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHH-HHHHHHHHHHHHHHH-----HhhHHHH
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML-LLAVPTLVGWGLIIW-----SQSVIMF  163 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~-----~~~~~~~  163 (333)
                      ...|.+.++   .|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+.+..     .++.+..
T Consensus       243 ~~~p~~~~~---~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~  319 (402)
T TIGR00897       243 VFLPMFVAE---LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVA  319 (402)
T ss_pred             HHHHHHHHH---cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHH
Confidence            346778877   8999889999999999999999999999999999988764 333334443333322     2355666


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHh
Q psy15539        164 CAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLM  239 (333)
Q Consensus       164 ~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  239 (333)
                      +++.++.|++.+...+. ...+.|..| ++||++.|+.+....+|..++|.+++.+    +|+..+++.+++.++..+..
T Consensus       320 ~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~  397 (402)
T TIGR00897       320 LIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLT  397 (402)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence            77788888887766543 455667654 6899999999999999999999998777    78888888887776655554


Q ss_pred             hcc
Q psy15539        240 LLM  242 (333)
Q Consensus       240 ~~~  242 (333)
                      +|+
T Consensus       398 ~~~  400 (402)
T TIGR00897       398 AFI  400 (402)
T ss_pred             HHh
Confidence            443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.42  E-value=8.2e-12  Score=113.71  Aligned_cols=154  Identities=16%  Similarity=0.119  Sum_probs=123.5

Q ss_pred             hhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy15539         91 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLT  170 (333)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  170 (333)
                      ..|.+.++  .+|.+....+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.....++.++.
T Consensus       245 ~~p~~~~~--~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (417)
T PRK10489        245 LYPALADE--VWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALF  322 (417)
T ss_pred             hhHHHHHh--ccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence            35666554  3788888999999999999999999999999998888888888888888877777778887778888899


Q ss_pred             hhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHH-HHHHhhcccCC
Q psy15539        171 GFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIF-FVGLMLLMPES  245 (333)
Q Consensus       171 G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~e~  245 (333)
                      |++.+...+...+++.|..|++.||++.++++....+|..+++.+.+++    +++..+++.+++.++ .++....+++.
T Consensus       323 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (417)
T PRK10489        323 GYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGEL  402 (417)
T ss_pred             HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence            9988877777888999999999999999999988889999999888877    455556555554443 44444555655


Q ss_pred             h
Q psy15539        246 P  246 (333)
Q Consensus       246 ~  246 (333)
                      +
T Consensus       403 ~  403 (417)
T PRK10489        403 R  403 (417)
T ss_pred             c
Confidence            3

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.41  E-value=3e-12  Score=115.15  Aligned_cols=143  Identities=16%  Similarity=0.140  Sum_probs=108.1

Q ss_pred             chhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH--HHHHHH--hhHHHH
Q psy15539         88 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGW--GLIIWS--QSVIMF  163 (333)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~--~~~~~~--~~~~~~  163 (333)
                      .....|.+.++  ++|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+..+..+..  +...+.  .+.+.+
T Consensus       238 ~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (394)
T TIGR00883       238 ITTYLPTYLTQ--TLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLF  315 (394)
T ss_pred             HHHHHHHHHHH--hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            33446666633  278888899999999999999999999999999999998776554444333  222222  456666


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHH-HHHHHHHHHHHHHHHhHHH----H-HHHHHHHHHHHH
Q psy15539        164 CAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTY-FQLQCTAGILFVYAVGSWA----S-VYGLSIICALLP  232 (333)
Q Consensus       164 ~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~-~~~~~~~g~~~~~~~~~~~----~-~~~~~~~~~~~~  232 (333)
                      ++..++.|++.+...+...+++.|.+|++.|+++.++ ++.+..+|..++|.+++++    + |+..++..++.+
T Consensus       316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       316 FFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            7778888988888889999999999999999999987 5667778888888888776    3 666555544433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG2325|consensus

Probab=99.41  E-value=5.6e-12  Score=113.11  Aligned_cols=178  Identities=16%  Similarity=0.169  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHHHhhhhhhhccchhhh-hhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccch-hHHHHHHH
Q psy15539         67 QYMAALTATIGGFIMGTILGWTSPAG-DRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR-KNTMLLLA  144 (333)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~  144 (333)
                      .|+.+.++.+..++.+...+++.+.. |+..+-  +.+.+.+..|++.++..+|.+++++++|+...|.|. |+.++.|.
T Consensus        32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~l--D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~  109 (488)
T KOG2325|consen   32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKL--DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF  109 (488)
T ss_pred             chHhHHHHHHHHHHHhhhheEEEeecchhhhhc--CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence            34556666666677776666666554 434332  356677789999999999999999999999999996 88899999


Q ss_pred             HHHHHHHHHH-HHH---h-hHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        145 VPTLVGWGLI-IWS---Q-SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       145 ~~~~~~~~~~-~~~---~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      ++..+++++. .+.   + ..+.++++|++.|+|.| .....-+|+++....+.|.++++....+..+|..+||.+...+
T Consensus       110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f  188 (488)
T KOG2325|consen  110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF  188 (488)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence            9999999988 332   3 57889999999999987 5677889999988889999999998888888888888886654


Q ss_pred             -----------------HHHHHHHHHHHHHHHHH-HHhhcccCChH
Q psy15539        220 -----------------SVYGLSIICALLPIFFV-GLMLLMPESPQ  247 (333)
Q Consensus       220 -----------------~~~~~~~~~~~~~~~~~-~~~~~~~e~~~  247 (333)
                                       -+..+.++.+++.++.+ ++.++++|.++
T Consensus       189 ~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  189 TPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             hhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence                             12345566666666543 34446677643

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.41  E-value=1e-11  Score=111.72  Aligned_cols=144  Identities=15%  Similarity=0.174  Sum_probs=115.1

Q ss_pred             hhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy15539         91 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLT  170 (333)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  170 (333)
                      .+|.+.++   .|.+..+.+++.+...++..+++++.|++.||+|+|+.+..+.++.+++.+...  . ........++.
T Consensus       222 ~lp~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~  295 (381)
T PRK03633        222 LMPLYLNH---QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFIL  295 (381)
T ss_pred             HHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHH
Confidence            46777777   788888999999999999999999999999999999999888877777665443  2 22334566777


Q ss_pred             hhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhh
Q psy15539        171 GFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLML  240 (333)
Q Consensus       171 G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  240 (333)
                      |++.+...|...+.+.|..|+++++...+..+....+|.+++|.+++++    +|++.|++.+.+.++..+..+
T Consensus       296 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        296 GAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            8777777888888899999988888888888888999999999998877    677788877777665544444

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.40  E-value=2.3e-11  Score=112.77  Aligned_cols=154  Identities=13%  Similarity=-0.040  Sum_probs=109.1

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh--hH--HHHHH
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ--SV--IMFCA  165 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~--~~~~~  165 (333)
                      ...|.+.++   .|.+.....+......++..++.++.++++||+|||++++.+.++.+++.+++....  +.  .....
T Consensus       292 ~~~p~i~~~---~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~  368 (479)
T PRK10077        292 YYAPEIFKT---LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL  368 (479)
T ss_pred             HHHHHHHHH---cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence            345777676   888877777777788889999999999999999999999999999888877765432  11  12222


Q ss_pred             HHHHHhhhhhh-hhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHH
Q psy15539        166 GRLLTGFGGGS-FAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSW----------ASVYGLSIICALLPIF  234 (333)
Q Consensus       166 ~~~l~G~~~g~-~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~~  234 (333)
                      +.++.+++.+. ..+..+.++.|.+|+++|+++.++.+....+|..+++.+.+.          .+|+..+++.++++++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (479)
T PRK10077        369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL  448 (479)
T ss_pred             HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHH
Confidence            33344444333 236678899999999999999999888888888776544332          2566667776666555


Q ss_pred             HHHH-hhcccCCh
Q psy15539        235 FVGL-MLLMPESP  246 (333)
Q Consensus       235 ~~~~-~~~~~e~~  246 (333)
                      ..+. +++.||++
T Consensus       449 ~~~~~~~~~~e~~  461 (479)
T PRK10077        449 AALFMWKFVPETK  461 (479)
T ss_pred             HHHHHHhccccCC
Confidence            4443 44567764

>KOG0569|consensus

Probab=99.40  E-value=5e-11  Score=107.75  Aligned_cols=156  Identities=12%  Similarity=0.031  Sum_probs=110.8

Q ss_pred             cchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh---hHH--
Q psy15539         87 WTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ---SVI--  161 (333)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~--  161 (333)
                      .+..+...+.++   .|++..++.+.+....+...+..+++.++.||+|||+.++++..++.+..+++....   +..  
T Consensus       288 ai~~Yst~i~~~---aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~  364 (485)
T KOG0569|consen  288 AIFFYSTSIFKT---AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGS  364 (485)
T ss_pred             eeHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            344445556666   899999999999999999999999999999999999999999999988887776531   111  


Q ss_pred             ----HHHHHHHHHhhhhh-hhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHH
Q psy15539        162 ----MFCAGRLLTGFGGG-SFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGS----WASVYGLSIICALLP  232 (333)
Q Consensus       162 ----~~~~~~~l~G~~~g-~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~  232 (333)
                          ..+++.++..++.+ +..|+.+-+.+|++|++.|+.+.++......++..+....-.    .+|- +.|++..+.+
T Consensus       365 ~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~  443 (485)
T KOG0569|consen  365 WLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPL  443 (485)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHH
Confidence                12233333333222 235777888999999999999999877766666655443333    3343 4555555555


Q ss_pred             HH-HHHHhhcccCCh
Q psy15539        233 IF-FVGLMLLMPESP  246 (333)
Q Consensus       233 ~~-~~~~~~~~~e~~  246 (333)
                      ++ .+..+.++|||+
T Consensus       444 ~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  444 AIFLIYLYRYLPETK  458 (485)
T ss_pred             HHHHHHHHHhCcccC
Confidence            54 556677899995

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.40  E-value=2.9e-12  Score=117.85  Aligned_cols=145  Identities=9%  Similarity=-0.029  Sum_probs=117.1

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhcc--chhHHHHH--HHHHHHHHHHHHHHHhhHHHHHH
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTV--GRKNTMLL--LAVPTLVGWGLIIWSQSVIMFCA  165 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--Grr~~l~~--~~~~~~~~~~~~~~~~~~~~~~~  165 (333)
                      ..+|.+.++   .|.+..+.+++.++..++..++.++.|+++||.  ++|+...+  +.++.+++.+++...++.+.+++
T Consensus       262 ~~l~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i  338 (455)
T TIGR00892       262 IFLVPYAKD---KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVI  338 (455)
T ss_pred             HHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            346777776   799999999999999999999999999999973  34443333  33444455555666778888889


Q ss_pred             HHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHH
Q psy15539        166 GRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-----SVYGLSIICALLPIFFVG  237 (333)
Q Consensus       166 ~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  237 (333)
                      .+++.|++.+...+...+++.|.+|+++++++.++++....+|.+++|.+++++     +|+..|++.+++.++..+
T Consensus       339 ~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       339 YCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            999999999998899999999999999999999999999999999999998865     478888887776655443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.39  E-value=8.8e-12  Score=116.25  Aligned_cols=134  Identities=20%  Similarity=0.072  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHhhhhhhhhhhhhhhhcccC
Q psy15539        114 SSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS----VIMFCAGRLLTGFGGGSFAVVVPMYTAEIA  189 (333)
Q Consensus       114 ~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~  189 (333)
                      .+..++..++.+++++++||+|||+.++++.++.+++.++..+..+    ...+...-+...++..+..+..+.+.+|.+
T Consensus       342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~  421 (502)
T TIGR00887       342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF  421 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence            3445566778899999999999999998888877777665554321    111111111122222234456777889999


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHhHHH-H-------------HHHHHHHHHHHHHHHHHHhhcccCChH
Q psy15539        190 ETEIRGTLGTYFQLQCTAGILFVYAVGSWA-S-------------VYGLSIICALLPIFFVGLMLLMPESPQ  247 (333)
Q Consensus       190 ~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~e~~~  247 (333)
                      |++.|+++.++.+....+|.++++.+.+.+ .             +...+++.++++++..+..+++||++.
T Consensus       422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~  493 (502)
T TIGR00887       422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKG  493 (502)
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCC
Confidence            999999999999999999999998887655 2             234566666666665555667898753

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK03699 putative transporter; Provisional

Probab=99.39  E-value=6.2e-12  Score=113.66  Aligned_cols=152  Identities=13%  Similarity=0.057  Sum_probs=119.3

Q ss_pred             hhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy15539         89 SPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRL  168 (333)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (333)
                      ...+|.+.++  .+|.+..+.+++.+.+.++..++.++.|+++||+|||+.+.....+.++..++....++...+.+..+
T Consensus       225 ~~~~p~~l~~--~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (394)
T PRK03699        225 ISWVPEYAQK--KFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAIL  302 (394)
T ss_pred             HHHHHHHHHH--HcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            3456777754  27999999999999999999999999999999999999998887777776666666677766777788


Q ss_pred             HHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhhccc
Q psy15539        169 LTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLMLLMP  243 (333)
Q Consensus       169 l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  243 (333)
                      +.|++.+..++...++..|..| +.++...+.......+|..++|.+.+++    +++..+++.+++.++..+.....+
T Consensus       303 ~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (394)
T PRK03699        303 GLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG  380 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence            8898888888888878888775 4467778887778889999999988776    777777777766666544444433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.38  E-value=3.1e-11  Score=108.91  Aligned_cols=137  Identities=12%  Similarity=0.040  Sum_probs=108.1

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHhhhhhhhhhh
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWG-LIIWSQSVIMFCAGRLLTGFGGGSFAVV  180 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~G~~~g~~~~~  180 (333)
                      .|.+..+.+++.+...++..++.++.|+++||+|||+.. .+..+..++.. +....++.+.++++.++.|++.+...+.
T Consensus       236 ~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~  314 (390)
T PRK03545        236 AGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLA  314 (390)
T ss_pred             cCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHH
Confidence            788888999999999999999999999999999988754 44444444433 3345567777888888999988777777


Q ss_pred             hhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhh
Q psy15539        181 VPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLML  240 (333)
Q Consensus       181 ~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  240 (333)
                      ..+.+.+..| +.|+++.++++....+|..+|+.+++++    +++..+++.+++.++.++..+
T Consensus       315 ~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~  377 (390)
T PRK03545        315 MQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSI  377 (390)
T ss_pred             HHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Confidence            7778888776 6889999998888888998899888876    788888888877776554443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.38  E-value=2.8e-11  Score=112.02  Aligned_cols=147  Identities=15%  Similarity=0.101  Sum_probs=119.5

Q ss_pred             hhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHH
Q psy15539         92 GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS-----QSVIMFCAG  166 (333)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~  166 (333)
                      .+.+..+   ..-|+...+++.++..+-.++.++++|.++||+.||++++.+-++.++..+..++.     .+.+.+++.
T Consensus        33 ~~wlv~~---lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~  109 (524)
T PF05977_consen   33 LAWLVTQ---LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLIL  109 (524)
T ss_pred             HHHHHHH---HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            3444445   66777889999999999999999999999999999999999888776655544432     378889999


Q ss_pred             HHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhhc
Q psy15539        167 RLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLMLL  241 (333)
Q Consensus       167 ~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  241 (333)
                      -++.|++.+...|...+++.|+.|+++...+.++.++...++.++||.+++.+    |-.+.|++-++..++.++....
T Consensus       110 ~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~  188 (524)
T PF05977_consen  110 TFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLR  188 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998876    5556666665554444433333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.38  E-value=5.7e-12  Score=113.95  Aligned_cols=127  Identities=14%  Similarity=0.089  Sum_probs=103.0

Q ss_pred             hhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHH
Q psy15539         91 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWG-LIIWSQSVIMFCAGRLL  169 (333)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l  169 (333)
                      .+|.+..+  ++|.+..+.+++.+...++..++.++.|++.||+|||+.+.++.++.++..+ ......+.+.+.+..++
T Consensus       260 ~~~~~~~~--~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (405)
T TIGR00891       260 LLPTYLKA--DLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFF  337 (405)
T ss_pred             hhHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence            35555543  2789999999999999999999999999999999999998887776544333 23334455666666677


Q ss_pred             HhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        170 TGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       170 ~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      .|++.++..+...+++.|.+|++.|+++.|+.+....+|..++|.+.+++
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l  387 (405)
T TIGR00891       338 QQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALL  387 (405)
T ss_pred             HHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            77777777788888999999999999999999999999999999998887

>TIGR00898 2A0119 cation transport protein

Probab=99.37  E-value=2.8e-11  Score=113.02  Aligned_cols=136  Identities=20%  Similarity=0.125  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhhhhhhhhhhhhhhhccc
Q psy15539        111 FIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV--IMFCAGRLLTGFGGGSFAVVVPMYTAEI  188 (333)
Q Consensus       111 ~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~~g~~~~~~~~~~~e~  188 (333)
                      +...+..+..+++.++.+++.||+|||+.+.++.++.+++.++..+.++.  +..++..++.+++.+..++..+.+.+|.
T Consensus       359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  438 (505)
T TIGR00898       359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL  438 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33445567778889999999999999999999999988888877776543  4455556677777777888889999999


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHhhcccCCh
Q psy15539        189 AETEIRGTLGTYFQLQCTAGILFVYAVGSWA--SVYGLSIICALLPIFFVGLMLLMPESP  246 (333)
Q Consensus       189 ~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~  246 (333)
                      +|++.|++++|+.+....+|.+++|.+.+..  ++...+++.++..++..+..+++||+.
T Consensus       439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       439 YPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             ccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence            9999999999999999999999999998733  455677777777777666677888874

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.36  E-value=4.3e-11  Score=109.66  Aligned_cols=155  Identities=13%  Similarity=0.063  Sum_probs=129.3

Q ss_pred             hhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchh--HHHHHHHHHHHHHHHHHHH--------Hh
Q psy15539         89 SPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRK--NTMLLLAVPTLVGWGLIIW--------SQ  158 (333)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~  158 (333)
                      ......+.++  .+|++..+...+..+..+..++|++++|++.||+|.|  ++++++.+++.+..+.-.+        ..
T Consensus       301 ~~~~~i~a~~--~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~  378 (477)
T PF11700_consen  301 ISFAGIYATE--VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLK  378 (477)
T ss_pred             HHHHHHHHHH--hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcc
Confidence            3334445553  3999999999999999999999999999999999999  8888888887666555554        56


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHH
Q psy15539        159 SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-----SVYGLSIICALLPI  233 (333)
Q Consensus       159 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~  233 (333)
                      +.+.+.+..++.|+..|+.++..-++.+|+.|+++.+...|++.+.....+.+||.+.+.+     +.|+.+....++.+
T Consensus       379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~  458 (477)
T PF11700_consen  379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFL  458 (477)
T ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence            7888999999999999999999999999999999999999999999999999999998877     35677777777766


Q ss_pred             HHHHHhhcccCC
Q psy15539        234 FFVGLMLLMPES  245 (333)
Q Consensus       234 ~~~~~~~~~~e~  245 (333)
                      +.+++.++++..
T Consensus       459 ~gl~ll~~v~~~  470 (477)
T PF11700_consen  459 IGLILLFFVDVE  470 (477)
T ss_pred             HHHHHHhhccch
Confidence            666666666543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00895 2A0115 benzoate transport

Probab=99.36  E-value=1.7e-11  Score=110.43  Aligned_cols=127  Identities=19%  Similarity=0.071  Sum_probs=103.5

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLL  169 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  169 (333)
                      ...|.+.++   .|.+..+.+++.+...++..++.++.|+++||+|||+.+....+......++.....+...+++..++
T Consensus       271 ~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (398)
T TIGR00895       271 NWLPKLMVE---LGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAI  347 (398)
T ss_pred             HHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            345666666   88888899999999999999999999999999999955444433333333333335567777888899


Q ss_pred             HhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        170 TGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       170 ~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      .|++.+...+...+++.|.+|+++|+++.|+.+....+|..++|.+.+++
T Consensus       348 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       348 AGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            99999999999999999999999999999999999999999999987753

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.35  E-value=3.2e-11  Score=110.34  Aligned_cols=152  Identities=12%  Similarity=-0.001  Sum_probs=96.1

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH--H--HhhHHHHHH
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII--W--SQSVIMFCA  165 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~~~~~~~~~  165 (333)
                      ..+|.+..+  .+|.+..+.+...++..++..+++++.|+++||+|||+.+.++.++.++..+...  .  ..+....+.
T Consensus       264 ~~lp~~l~~--~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (432)
T PRK10406        264 TYMQKYLVN--TAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFG  341 (432)
T ss_pred             HHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            346666643  2788888888888888888899999999999999999988776655443333221  1  112222222


Q ss_pred             HHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHH-HHHHHHHHHHHHhHHH---H-HHHHHHHHHHHHHHHHHHhh
Q psy15539        166 GRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQL-QCTAGILFVYAVGSWA---S-VYGLSIICALLPIFFVGLML  240 (333)
Q Consensus       166 ~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~-~~~~g~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~  240 (333)
                      .-++.+++.+...+....+++|++|++.|+++.|+.+. +..++....|.+..++   + |...+++.++..++.++..+
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~  421 (432)
T PRK10406        342 LVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSL  421 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence            22222233334445567788999999999999999654 4444344466665555   2 44555555555555555555


Q ss_pred             ccc
Q psy15539        241 LMP  243 (333)
Q Consensus       241 ~~~  243 (333)
                      +++
T Consensus       422 ~l~  424 (432)
T PRK10406        422 MLH  424 (432)
T ss_pred             Hhh
Confidence            443

>PRK09669 putative symporter YagG; Provisional

Probab=99.35  E-value=1.4e-11  Score=113.06  Aligned_cols=143  Identities=17%  Similarity=0.212  Sum_probs=100.4

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhc----cchh-HHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHH
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDT----VGRK-NTMLLLAVPTLVGWGLIIWSQS------VIMFCAGRLLT  170 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~  170 (333)
                      +|++...+|.+.++..+..++..|+.|+++||    +||| +.++.+.+..+++.++....++      ...+++..++.
T Consensus        40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~  119 (444)
T PRK09669         40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILL  119 (444)
T ss_pred             cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999998    7775 4555677777777665554432      34555556666


Q ss_pred             hhhhhhhhhhhhhhhcccC-CCcchhhHHHHHHHHHHHHHHHHHHHh----HHH-------HHHHHHHHHHHHHHHHHHH
Q psy15539        171 GFGGGSFAVVVPMYTAEIA-ETEIRGTLGTYFQLQCTAGILFVYAVG----SWA-------SVYGLSIICALLPIFFVGL  238 (333)
Q Consensus       171 G~~~g~~~~~~~~~~~e~~-~~~~rg~~~~~~~~~~~~g~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~  238 (333)
                      +.+.........++.+|+. ++++|.+..++...+..+|..+++.+.    ...       +|+..+.+.++++++..+.
T Consensus       120 ~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~  199 (444)
T PRK09669        120 SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC  199 (444)
T ss_pred             HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            7666666667778889987 568899887777666666666555432    221       5676676666666554333


Q ss_pred             -hhcccC
Q psy15539        239 -MLLMPE  244 (333)
Q Consensus       239 -~~~~~e  244 (333)
                       ++..+|
T Consensus       200 ~~~~~~e  206 (444)
T PRK09669        200 CFFMTKE  206 (444)
T ss_pred             HhCCeEE
Confidence             333444

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.35  E-value=3.4e-11  Score=108.76  Aligned_cols=152  Identities=14%  Similarity=0.106  Sum_probs=114.3

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHH
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ-SVIMFCAGRL  168 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  168 (333)
                      ...|.+..+   .|.+..+.+.+.+.+.++..++.++.|++.||+|||+.+.++..+..++.++....+ +...+  ..+
T Consensus       226 ~~lp~~l~~---~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~  300 (393)
T PRK09705        226 AWLPAFYIE---IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAM  300 (393)
T ss_pred             HHHHHHHHH---cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHH
Confidence            346777777   799999999999999999999999999999999999999888877777766554323 22222  234


Q ss_pred             HHhhhhhhhhhhhhhhhcccCC-CcchhhHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHH-hhc
Q psy15539        169 LTGFGGGSFAVVVPMYTAEIAE-TEIRGTLGTYFQLQCTAGILFVYAVGSWA-----SVYGLSIICALLPIFFVGL-MLL  241 (333)
Q Consensus       169 l~G~~~g~~~~~~~~~~~e~~~-~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~  241 (333)
                      +.|++.+...+.......+..+ +++|++..++.+....++..++|.+.+++     +|...+++.++.+++..++ ..+
T Consensus       301 l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (393)
T PRK09705        301 VCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRF  380 (393)
T ss_pred             HHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence            5677777777777766667764 67899999998888888899999998887     3566666666666554433 446


Q ss_pred             ccCCh
Q psy15539        242 MPESP  246 (333)
Q Consensus       242 ~~e~~  246 (333)
                      .||++
T Consensus       381 ~~~~~  385 (393)
T PRK09705        381 APARF  385 (393)
T ss_pred             ccccc
Confidence            67764

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.34  E-value=5.3e-11  Score=109.56  Aligned_cols=150  Identities=13%  Similarity=0.060  Sum_probs=98.5

Q ss_pred             hhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhcc--chhHHH-HHHHHHHHHHHHHHHH--HhhHHHH
Q psy15539         89 SPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTV--GRKNTM-LLLAVPTLVGWGLIIW--SQSVIMF  163 (333)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~--~~~~~~~  163 (333)
                      ...+|.+.++  ..|.+..+.+++...+.++..++.++.|+++||+  |||+.. +....+..++.+...+  ..+....
T Consensus       273 ~~~~P~~l~~--~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  350 (452)
T PRK11273        273 LDWSPTYLKE--VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVD  350 (452)
T ss_pred             HHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHH
Confidence            3457777765  2678888889988899999999999999999999  555432 2222333333332222  2234444


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHH-HHHHHhHHH----HHHHHHHHHHHHHHHHHHH
Q psy15539        164 CAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGIL-FVYAVGSWA----SVYGLSIICALLPIFFVGL  238 (333)
Q Consensus       164 ~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  238 (333)
                      +++.++.|.+..+.......+..|.+|++.||++.|+.+....+|+. ++|.+.+++    +|+..|++.++.+++.++.
T Consensus       351 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~  430 (452)
T PRK11273        351 MACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL  430 (452)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            44455555543333333345677999999999999998877777654 467776655    7888888777776665444


Q ss_pred             hh
Q psy15539        239 ML  240 (333)
Q Consensus       239 ~~  240 (333)
                      ..
T Consensus       431 ~~  432 (452)
T PRK11273        431 LI  432 (452)
T ss_pred             HH
Confidence            33

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.33  E-value=2.9e-11  Score=112.60  Aligned_cols=141  Identities=11%  Similarity=-0.003  Sum_probs=106.6

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHH
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS--QSVIMFCAGR  167 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~  167 (333)
                      ..+|.+.++  ++|.+..+.+++.+...++..++.++.|+++||+|||+++.++.++..+..++....  .+.+.+.+..
T Consensus       296 ~~lp~~l~~--~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (496)
T PRK03893        296 ALLPTYLKT--DLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL  373 (496)
T ss_pred             HHHHHHHHh--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            457778753  289999999999999999999999999999999999999888877666665544332  2333444444


Q ss_pred             HHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHH
Q psy15539        168 LLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLP  232 (333)
Q Consensus       168 ~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~  232 (333)
                      ++.++...+..+..+.++.|.+|++.||+++++.+....+|..++|.+++.+    +|+..+...+...
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSL  442 (496)
T ss_pred             HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence            5444433344566777889999999999999999888899999999998877    5666655444333

>PRK10504 putative transporter; Provisional

Probab=99.33  E-value=4e-11  Score=110.98  Aligned_cols=128  Identities=8%  Similarity=0.012  Sum_probs=104.8

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH---hhHHHHHHH
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS---QSVIMFCAG  166 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~  166 (333)
                      ...|.+.+.  ..|.++.+.+++.....++..++.++.|++.||+|||+++.++.++.++..++..+.   .+.+.+.+.
T Consensus       282 ~~~~~~~~~--~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (471)
T PRK10504        282 FMTPVFLQI--GLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFV  359 (471)
T ss_pred             HHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence            345666553  278888899999988899999999999999999999999998888888776666553   233444556


Q ss_pred             HHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        167 RLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       167 ~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      .++.|++.+..++....++.+..|++.||.+.++.+....+|..+++.+.+.+
T Consensus       360 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l  412 (471)
T PRK10504        360 LFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL  412 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            67788888888888888999999999999999999999999999998887765

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.32  E-value=7.9e-11  Score=107.52  Aligned_cols=127  Identities=17%  Similarity=0.114  Sum_probs=95.7

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHH
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ--SVIMFCAGR  167 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~  167 (333)
                      ..+|.+.++   .|.+..+.+.+.+...++..++.++.|++.||+|||+.+..+.++.++..+.....+  +...+.+..
T Consensus       252 ~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (426)
T PRK12307        252 GLLPTYLAG---EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACL  328 (426)
T ss_pred             HHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence            346777777   788888889999999999999999999999999999999888877766655544332  222222222


Q ss_pred             HHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        168 LLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       168 ~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      +..+++..+..+..+.++.|.+|++.||++.|+......+|..++|.+.+++
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l  380 (426)
T PRK12307        329 FGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL  380 (426)
T ss_pred             HHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence            2222222333455667889999999999999998888889999999998877

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.32  E-value=5.7e-11  Score=110.04  Aligned_cols=145  Identities=12%  Similarity=0.091  Sum_probs=123.7

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLL  169 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  169 (333)
                      ..+|.+.++  .+|.+....|++.+.+.+|.++|+++.+++.+|+++++.+..+.++.+++.+..++.++.+..+++.++
T Consensus       239 aLlPl~a~~--~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l  316 (524)
T PF05977_consen  239 ALLPLFARD--VLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFL  316 (524)
T ss_pred             HhhhHHHHH--HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            446777755  488899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHH
Q psy15539        170 TGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFV  236 (333)
Q Consensus       170 ~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  236 (333)
                      .|++.........+.+.+..|++.||+.++++++....+..+|..+.+.+    +.+..+.+.++..++..
T Consensus       317 ~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~  387 (524)
T PF05977_consen  317 AGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSA  387 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            99999988888899999999999999999998887777777777776665    55666666655544433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.32  E-value=2.9e-11  Score=107.70  Aligned_cols=127  Identities=13%  Similarity=0.021  Sum_probs=111.6

Q ss_pred             hhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHH
Q psy15539         91 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS-VIMFCAGRLL  169 (333)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l  169 (333)
                      ..|.+.++  .+|.+..+.+++.+...++..++.++.+++.||+|||+.+..+.++.+++.++..+.++ .+.+++..++
T Consensus       233 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (365)
T TIGR00900       233 LFPYVQSK--YLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFA  310 (365)
T ss_pred             HhHHHHHH--HhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Confidence            35666553  26888889999999999999999999999999999999999888888888777777664 7788888999


Q ss_pred             HhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        170 TGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       170 ~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      .|++.+...+...+++.|.+|++.|+++.++.+....+|..+++.+.+++
T Consensus       311 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l  360 (365)
T TIGR00900       311 IGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL  360 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999888765

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.30  E-value=1.5e-10  Score=104.25  Aligned_cols=139  Identities=14%  Similarity=0.119  Sum_probs=112.7

Q ss_pred             hhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy15539         91 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLT  170 (333)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  170 (333)
                      ..|.+.++   .|.+..+.+.+.+...++..+..++.|++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.
T Consensus       227 ~~~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  303 (382)
T PRK11128        227 FSAIYWQA---AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILH  303 (382)
T ss_pred             HHHHHHHH---CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            34556666   888988899999999999999999999999999999999999999888888888888989889999999


Q ss_pred             hhhhhhhhhhhhhhhcccCCCcchhhHHHHHH-HHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHH
Q psy15539        171 GFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQ-LQCTAGILFVYAVGSWA----SVYGLSIICALLPIF  234 (333)
Q Consensus       171 G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~-~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~  234 (333)
                      |++.+...+....++.+. +++++++..+.++ ....+|..++|.+++.+    ++ ..++..+++.++
T Consensus       304 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~  370 (382)
T PRK11128        304 CGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP  370 (382)
T ss_pred             HHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence            999998888888888887 5556788888765 55677778888888877    44 344444444443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.30  E-value=2.4e-11  Score=112.41  Aligned_cols=149  Identities=11%  Similarity=-0.022  Sum_probs=104.4

Q ss_pred             hhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhH-------HHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy15539         92 GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKN-------TMLLLAVPTLVGWGLIIWSQSVIMFC  164 (333)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~-------~l~~~~~~~~~~~~~~~~~~~~~~~~  164 (333)
                      +|.+..+  .+|.+..+.+.+.++..++..++.+++|+++||+|||+       .+.+..++.++..++.....+....+
T Consensus       275 ~p~~l~~--~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~  352 (476)
T PLN00028        275 IAEYFYD--RFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAI  352 (476)
T ss_pred             HHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence            5555443  27999999999999999999999999999999998762       22233333333334444444555555


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHhhc
Q psy15539        165 AGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA---SVYGLSIICALLPIFFVGLMLL  241 (333)
Q Consensus       165 ~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  241 (333)
                      +.-++.+++.+...+...+++.+.. ++.||...|+.+.+..+|+.+++.+...-   +|+..|++.+++.++..++.++
T Consensus       353 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~  431 (476)
T PLN00028        353 VVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAF  431 (476)
T ss_pred             HHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHh
Confidence            5556666666656666666667765 47899999998888888888887765421   5888888888777776666665


Q ss_pred             cc
Q psy15539        242 MP  243 (333)
Q Consensus       242 ~~  243 (333)
                      ++
T Consensus       432 ~~  433 (476)
T PLN00028        432 IH  433 (476)
T ss_pred             ee
Confidence            54

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.29  E-value=1.2e-10  Score=105.45  Aligned_cols=135  Identities=12%  Similarity=0.127  Sum_probs=111.9

Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhh
Q psy15539        103 LVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVP  182 (333)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~  182 (333)
                      +.+....+.+.++..+...++.+..|++.||+|||+.+.++.++.++..++....++.+.+++..++.|++.+.......
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556778888888899999999999999999999999999988888877777788888888889999998877766677


Q ss_pred             hhhcccCCCcchhhHHHH-HHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHH
Q psy15539        183 MYTAEIAETEIRGTLGTY-FQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVG  237 (333)
Q Consensus       183 ~~~~e~~~~~~rg~~~~~-~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  237 (333)
                      .+..+..+++.+++..+. ++....+|..+++.+++++    ||+..|.+.+++.++..+
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~  389 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL  389 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            778888888888887766 6778888999998888777    778888887777665443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.29  E-value=9.4e-11  Score=107.33  Aligned_cols=151  Identities=19%  Similarity=0.140  Sum_probs=100.8

Q ss_pred             chhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhcc--chh-HHHHHHHHHHHHHHHHHH--HHhhHHH
Q psy15539         88 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTV--GRK-NTMLLLAVPTLVGWGLII--WSQSVIM  162 (333)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--Grr-~~l~~~~~~~~~~~~~~~--~~~~~~~  162 (333)
                      ....+|.+..+  +.|.+..+.+...+.+.++..++.++.|+++||+  ++| .......+...+..+...  ...+...
T Consensus       262 ~~~~~p~~l~~--~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (434)
T PRK11663        262 INDWGNLYMSE--TLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVM  339 (434)
T ss_pred             HHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHH
Confidence            33456777743  2799999999999999999999999999999999  333 322221111111111111  1223333


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHH
Q psy15539        163 FCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGL  238 (333)
Q Consensus       163 ~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  238 (333)
                      ..+..++.|++..+........+.|.+|++.|++++|+.+....+|..++|.+.+++    +|...+++.++++++..+.
T Consensus       340 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~  419 (434)
T PRK11663        340 QAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALL  419 (434)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            334444455443322333445678999999999999999999999999999888776    7888888888877665544


Q ss_pred             hh
Q psy15539        239 ML  240 (333)
Q Consensus       239 ~~  240 (333)
                      .+
T Consensus       420 ~~  421 (434)
T PRK11663        420 LL  421 (434)
T ss_pred             HH
Confidence            43

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.28  E-value=1.4e-10  Score=106.24  Aligned_cols=115  Identities=16%  Similarity=0.201  Sum_probs=96.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHhhhhhhhhhhhhh
Q psy15539        105 TESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS-QSVIMFCAGRLLTGFGGGSFAVVVPM  183 (333)
Q Consensus       105 ~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~~  183 (333)
                      +....+++.++..++.+++.+++++++||+|+|+.+.++.++.+++.++..+. .+.+.+++..++.|++.+...+...+
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567777888899999999999999999999999999988888887776664 35566677788899999988899999


Q ss_pred             hhcccCC-------CcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        184 YTAEIAE-------TEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       184 ~~~e~~~-------~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      +++|..+       ++.+|...++.+....+|..+++.+.+++
T Consensus       335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l  377 (437)
T TIGR00792       335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI  377 (437)
T ss_pred             HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988865       55679999999999999999988887765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.27  E-value=3e-10  Score=104.02  Aligned_cols=130  Identities=17%  Similarity=0.208  Sum_probs=92.6

Q ss_pred             chhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH-HHH---HhhHHHH
Q psy15539         88 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGL-IIW---SQSVIMF  163 (333)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~-~~~---~~~~~~~  163 (333)
                      .....|.+.++  ..|.+..+.+++...+.++..++.++.|+++||+|||+.++.+.++..+..+. ...   .++....
T Consensus       257 ~~~~~p~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (434)
T PRK15075        257 ITVYTPTFGKT--VLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARM  334 (434)
T ss_pred             HHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence            34446777654  26888888888888899999999999999999999999988765544332221 111   2233334


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHH-HHHHHHHHHHHHHHhHHH
Q psy15539        164 CAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYF-QLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       164 ~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~-~~~~~~g~~~~~~~~~~~  219 (333)
                      .+..++.|++.+...+....++.|.+|++.|+++.++. +.+..+++.++|.+.+++
T Consensus       335 ~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i  391 (434)
T PRK15075        335 LAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL  391 (434)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence            44455566666666666778899999999999999984 555555566778777665

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.25  E-value=3.6e-11  Score=109.91  Aligned_cols=150  Identities=12%  Similarity=0.127  Sum_probs=111.9

Q ss_pred             hhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhh----ccchhHHHH-HHHHHHHHHHHHHHHH-h-------
Q psy15539         92 GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVD----TVGRKNTML-LLAVPTLVGWGLIIWS-Q-------  158 (333)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----r~Grr~~l~-~~~~~~~~~~~~~~~~-~-------  158 (333)
                      .+.+.+.   .|+++...+.+..+.-+..++..|+.|.++|    |+||||..+ +|.+..+++.+++... +       
T Consensus        25 ~~f~~~~---~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~  101 (428)
T PF13347_consen   25 LYFYTDV---LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTA  101 (428)
T ss_pred             HHHHHHH---cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhh
Confidence            3445555   8999999999999999999999999999999    899876655 6778888887777755 3       


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhhhcccCC-CcchhhHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHH
Q psy15539        159 SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAE-TEIRGTLGTYFQLQCTAGILFVYAVGSWA-----------SVYGLSI  226 (333)
Q Consensus       159 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~-~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~~~~~  226 (333)
                      ....+.+..++..++.........++..|+.+ +++|.+..+.-..+..+|.++...+...+           +|++..+
T Consensus       102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~  181 (428)
T PF13347_consen  102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMAL  181 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHH
Confidence            22345666677788888888888999999987 57899999988777777776444443322           4777777


Q ss_pred             HHHHHHHHHHH-HhhcccC
Q psy15539        227 ICALLPIFFVG-LMLLMPE  244 (333)
Q Consensus       227 ~~~~~~~~~~~-~~~~~~e  244 (333)
                      +.+++.++..+ ..+..+|
T Consensus       182 v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  182 VLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHHhhhhhheeee
Confidence            77777666443 3445565

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.24  E-value=3.7e-10  Score=104.83  Aligned_cols=143  Identities=10%  Similarity=0.134  Sum_probs=107.3

Q ss_pred             cccCchhHHHHHH-HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH---HHH-hhHHHHHHHHHHHhhhhhh
Q psy15539        102 FLVTESDLSFIGS-SMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI---IWS-QSVIMFCAGRLLTGFGGGS  176 (333)
Q Consensus       102 ~~~~~~~~~~~~~-~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l~G~~~g~  176 (333)
                      .|.+..+.+++.. ...++.+++.++.|+++||+|+|+.+.++.++.+++.++.   ... ++...+.+..++..++.|.
T Consensus       253 ~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~  332 (491)
T PRK11010        253 VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGM  332 (491)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            8999999999874 5568999999999999999999998877666555544332   222 3444444455665555555


Q ss_pred             hhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhhcccC
Q psy15539        177 FAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLMLLMPE  244 (333)
Q Consensus       177 ~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~e  244 (333)
                      ..+...++..+..+++.+++..++.+....+|..+++.+.+++    ||+..|.+.++++++.++...++++
T Consensus       333 ~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        333 GTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5566778888999999999999999988899988777777766    7888888888888776666655544

>TIGR01272 gluP glucose/galactose transporter

Probab=99.24  E-value=4.7e-10  Score=97.81  Aligned_cols=138  Identities=7%  Similarity=-0.077  Sum_probs=103.6

Q ss_pred             cchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy15539         87 WTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAG  166 (333)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (333)
                      .+...++.|.++...+|.++.+.++..+.+..+..+|.++.+++.||+|+|+.+.++.++.+++.++....++... ..+
T Consensus       158 ~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~  236 (310)
T TIGR01272       158 SAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWF  236 (310)
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHH
Confidence            3344456676542236899999999999999999999999999999999999988888887777766555444332 345


Q ss_pred             HHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHH
Q psy15539        167 RLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSII  227 (333)
Q Consensus       167 ~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~  227 (333)
                      .++.|++.+..+|...+...+..|++ .+++.++. ....+|..+.|.+.+.+    +.+..+++
T Consensus       237 ~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v  299 (310)
T TIGR01272       237 VLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFAL  299 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHH
Confidence            66889999999999999988888754 45666665 45568888888876665    44555543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.23  E-value=2.2e-10  Score=105.99  Aligned_cols=159  Identities=11%  Similarity=0.053  Sum_probs=105.9

Q ss_pred             hccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhh----ccch-hHHHHHHHHHHHHHHHHHHHHh-
Q psy15539         85 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVD----TVGR-KNTMLLLAVPTLVGWGLIIWSQ-  158 (333)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~-  158 (333)
                      ...+...++.|..+  ..|++...+|.+..+.-+.-++..|+.|+++|    |+|| |+.++++.+..+++.+++...+ 
T Consensus        22 ~~~~~~~l~~yyt~--v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~   99 (473)
T PRK10429         22 IGIVYMYLMYYYTD--VVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHL   99 (473)
T ss_pred             HHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCC
Confidence            33344444444444  27999999999999999999999999999999    6699 5556667777777766664432 


Q ss_pred             -----hHHHHHHHHHHHhhhhhhhhhhhhhhhcccC-CCcchhhHHHHHHHHHHHHHHHHHHHhHH----H-------HH
Q psy15539        159 -----SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIA-ETEIRGTLGTYFQLQCTAGILFVYAVGSW----A-------SV  221 (333)
Q Consensus       159 -----~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~-~~~~rg~~~~~~~~~~~~g~~~~~~~~~~----~-------~~  221 (333)
                           .+..+++..++.+++.........++..|+. ++++|.+..++-..+..+|..+.+.+...    .       +|
T Consensus       100 ~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~  179 (473)
T PRK10429        100 FEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGF  179 (473)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhH
Confidence                 1334555566677777777788888999998 68999998888555555554444333221    1       45


Q ss_pred             HHHHHHHHHHHHHHH-HHhhcccCC
Q psy15539        222 YGLSIICALLPIFFV-GLMLLMPES  245 (333)
Q Consensus       222 ~~~~~~~~~~~~~~~-~~~~~~~e~  245 (333)
                      +...++.+++.++.. +.++..+|.
T Consensus       180 ~~~~~i~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        180 QMFTLVLIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCceec
Confidence            555555555554433 333345553

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.23  E-value=8.2e-10  Score=95.04  Aligned_cols=143  Identities=16%  Similarity=0.097  Sum_probs=102.1

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhh
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVV  181 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~  181 (333)
                      +|++..+++.+....+...++.+++.|.++||+|||+.-++.+++.+++++. -..+++..++++|++.|++....+...
T Consensus        64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS~F  142 (354)
T PF05631_consen   64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFSAF  142 (354)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999988888888888864 445789999999999999999988888


Q ss_pred             hhhh-ccc----CCCcchhhHHHHHH-HHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHhh-cccCC
Q psy15539        182 PMYT-AEI----AETEIRGTLGTYFQ-LQCTAGILFVYAVGSWA------SVYGLSIICALLPIFFVGLML-LMPES  245 (333)
Q Consensus       182 ~~~~-~e~----~~~~~rg~~~~~~~-~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~e~  245 (333)
                      -+++ .|.    +|++..+...+... ...++-.+.+.+++.++      +...+|....++.++..+.+. .-+|.
T Consensus       143 EsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~EN  219 (354)
T PF05631_consen  143 ESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPEN  219 (354)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhccccc
Confidence            7775 444    34444444443322 23333333444444443      235677776666665544433 33443

>TIGR00788 fbt folate/biopterin transporter

Probab=99.22  E-value=3.8e-10  Score=104.06  Aligned_cols=169  Identities=17%  Similarity=0.086  Sum_probs=116.9

Q ss_pred             HHHHHHHhhhhhhhccchhhh-hhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHH
Q psy15539         72 LTATIGGFIMGTILGWTSPAG-DRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG-----RKNTMLLLAV  145 (333)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~~~~  145 (333)
                      .++...++..|.. +.....+ |.+.++   +|+++++.+.+.+...+...+-.+ +|+++||++     ||+.++++.+
T Consensus        29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~~---lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~  103 (468)
T TIGR00788        29 AIGLQVLFVKGIA-GLMRLPLSPMLTDD---LGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGL  103 (468)
T ss_pred             HHHHHHHHHhhHH-HHhhhhhhHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHH
Confidence            3444445566665 4444444 444445   899999999999999999988555 999999998     7777777776


Q ss_pred             HHH-HHHHHHHHHhhHH-HHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHH---HHHHHHHHHHHHhHHH-
Q psy15539        146 PTL-VGWGLIIWSQSVI-MFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQL---QCTAGILFVYAVGSWA-  219 (333)
Q Consensus       146 ~~~-~~~~~~~~~~~~~-~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~---~~~~g~~~~~~~~~~~-  219 (333)
                      +.+ +....++..++.. ...++.++.+++.+......-++..|..+ ++++...+....   ...+|.++++.+++.+ 
T Consensus       104 l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~  182 (468)
T TIGR00788       104 LGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL  182 (468)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            663 3333333334433 34447889999999999999999999998 555443333322   2336777776666655 


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHhhcccCCh
Q psy15539        220 ---SVYGLSIICALLPIFFVGLMLLMPESP  246 (333)
Q Consensus       220 ---~~~~~~~~~~~~~~~~~~~~~~~~e~~  246 (333)
                         +|+..+++.+++.++..+..++++|++
T Consensus       183 ~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~  212 (468)
T TIGR00788       183 DKTLTRILFLITAALLLLQLFVSNLSKERR  212 (468)
T ss_pred             HhcCcchHHHHHHHHHHHHHHHHHhccccc
Confidence               799999888887777665666778763

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.21  E-value=5.6e-10  Score=100.77  Aligned_cols=143  Identities=13%  Similarity=0.009  Sum_probs=105.0

Q ss_pred             hhhhhcCCcccccCchhHHHHHHHHH-HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH------HhhHHHHH
Q psy15539         92 GDRLIAGEYPFLVTESDLSFIGSSMA-LGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW------SQSVIMFC  164 (333)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~~~  164 (333)
                      .+.+.++   .|+++++.+++..... .+..++.++.|++.||+|+|+.+.++.++.++..+....      ..+...++
T Consensus       231 ~~~~l~~---~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (390)
T TIGR02718       231 SKLYLVD---AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAW  307 (390)
T ss_pred             hhHHHHh---cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHH
Confidence            4566777   8999999999888775 466778899999999999999988877665333332221      12233334


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhcccCCC-cchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHH
Q psy15539        165 AGRLLTGFGGGSFAVVVPMYTAEIAET-EIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVG  237 (333)
Q Consensus       165 ~~~~l~G~~~g~~~~~~~~~~~e~~~~-~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  237 (333)
                      ....+.+++.+...+...+.+.+..++ +.+++..++.+....+|..++|.+++++    +++..|++.+++.++.++
T Consensus       308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       308 SCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            445556666777777777777777765 8899999999999999999999998876    667777776666555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2563|consensus

Probab=99.20  E-value=2.2e-09  Score=94.39  Aligned_cols=154  Identities=11%  Similarity=0.029  Sum_probs=115.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHH
Q psy15539         62 AKRITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML  141 (333)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~  141 (333)
                      +...+||..++...+.++..++..-.+++.......-   +| +....-|+..+|++.+....+++-|+.||+|-|....
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~---Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~l  113 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSF---YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALL  113 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHH---hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHH
Confidence            3445677777777777776654333333333333332   56 6678889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh------hHH--HHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHH
Q psy15539        142 LLAVPTLVGWGLIIWSQ------SVI--MFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVY  213 (333)
Q Consensus       142 ~~~~~~~~~~~~~~~~~------~~~--~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~  213 (333)
                      ++..+.+++..+-..+.      .++  ....+..+.++++-.......-...-|||+++|..+..+-.++..+|.+++.
T Consensus       114 lgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~  193 (480)
T KOG2563|consen  114 LGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGF  193 (480)
T ss_pred             HHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHh
Confidence            99999999988876642      233  5556777777777666655556667789999999999888877777777777


Q ss_pred             HHhHHH
Q psy15539        214 AVGSWA  219 (333)
Q Consensus       214 ~~~~~~  219 (333)
                      ++...+
T Consensus       194 llppil  199 (480)
T KOG2563|consen  194 LLPPIL  199 (480)
T ss_pred             hcccee
Confidence            775544

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.19  E-value=1.7e-10  Score=103.19  Aligned_cols=128  Identities=13%  Similarity=0.107  Sum_probs=91.0

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccch-hHHHH-HHHHH-HHHHHHHHHH--HhhHHHHH
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR-KNTML-LLAVP-TLVGWGLIIW--SQSVIMFC  164 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Gr-r~~l~-~~~~~-~~~~~~~~~~--~~~~~~~~  164 (333)
                      ...|.+..+  .+|.+..+.+++.+...++..++.++.|++.||.++ |+... ..... ..++......  ..+....+
T Consensus       237 ~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (379)
T TIGR00881       237 DWSPLYLTQ--EKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDL  314 (379)
T ss_pred             HHHHHHHHH--HhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Confidence            345556544  278888999999999999999999999999998643 33222 22211 1222222222  23445555


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        165 AGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       165 ~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      ++.++.|+...+..+....+..|.+|++.|+++.++.+....+|..++|.+.+.+
T Consensus       315 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  369 (379)
T TIGR00881       315 ICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYL  369 (379)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHH
Confidence            6667777766556666677889999999999999999999999999999888776

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.19  E-value=4.5e-10  Score=115.02  Aligned_cols=127  Identities=17%  Similarity=0.116  Sum_probs=110.1

Q ss_pred             hhhhhhcCCcccccCch-hHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy15539         91 AGDRLIAGEYPFLVTES-DLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLL  169 (333)
Q Consensus        91 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  169 (333)
                      .+|.+..+  .+|.+.. ..+++.+...++.+++.+++|+++||+++++.+.++.++.+++.++..+..+.+.++++.++
T Consensus       254 ~~~~~~~~--~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (1146)
T PRK08633        254 NFPAYAKE--VLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFL  331 (1146)
T ss_pred             hhHHHHHH--HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            34555443  2788888 89999999999999999999999999999999998888888888888888888888888999


Q ss_pred             HhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        170 TGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       170 ~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      .|++.+...+...+++.+..|++.||+++++.+....+|.++++.++..+
T Consensus       332 ~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l  381 (1146)
T PRK08633        332 FGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLF  381 (1146)
T ss_pred             HHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888999999999999999999999988888887777776655

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.19  E-value=8.1e-10  Score=99.34  Aligned_cols=161  Identities=16%  Similarity=0.190  Sum_probs=105.4

Q ss_pred             hhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHHHHHHHHHHhhHH
Q psy15539         83 TILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG-RKNTMLLLAVPTLVGWGLIIWSQSVI  161 (333)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~~~  161 (333)
                      ...+...+.++.+.++   .|+|..++|.+.+...+..+++.+++|.++||.+ +|+.+.+..++.++.........+++
T Consensus        16 ~~~G~~~p~~~~~L~~---~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~   92 (400)
T PF03825_consen   16 FAYGAFLPYLPLYLES---RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFW   92 (400)
T ss_pred             HHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            3444556778889998   9999999999999999999999999999999986 56777777777777666666777888


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhcccCCCc--chhhHHHHHHHHHHHHHHH-HHHHhHHHH---HHHHHHHHHHHHHHH
Q psy15539        162 MFCAGRLLTGFGGGSFAVVVPMYTAEIAETE--IRGTLGTYFQLQCTAGILF-VYAVGSWAS---VYGLSIICALLPIFF  235 (333)
Q Consensus       162 ~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~--~rg~~~~~~~~~~~~g~~~-~~~~~~~~~---~~~~~~~~~~~~~~~  235 (333)
                      .+++.-++..+......|...++..+....+  +-|+.=.+-..++.++... +..+.+..+   ....+++.+...++.
T Consensus        93 ~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll  172 (400)
T PF03825_consen   93 WLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLL  172 (400)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHH
Confidence            8887777778777777777777776665421  1122222222333333221 122222222   223444555444444


Q ss_pred             HHHhhcccCCh
Q psy15539        236 VGLMLLMPESP  246 (333)
Q Consensus       236 ~~~~~~~~e~~  246 (333)
                      ....+.+|+.|
T Consensus       173 ~~~~l~lp~~~  183 (400)
T PF03825_consen  173 AGFALFLPKTP  183 (400)
T ss_pred             HHHHHhCCCCc
Confidence            44455677765

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.18  E-value=1.8e-09  Score=94.98  Aligned_cols=150  Identities=15%  Similarity=0.104  Sum_probs=117.6

Q ss_pred             ccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH-hhHHHHH
Q psy15539         86 GWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS-QSVIMFC  164 (333)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~  164 (333)
                      ..+.++-|.+.+.   .|.+.+..+++..++.++..+|..+.|+++|| +.|+.+....++.++..+.+.+. .+.+..+
T Consensus       229 ~~ftYi~P~L~~v---~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~  304 (394)
T COG2814         229 ALYTYIRPFLESV---AGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALAL  304 (394)
T ss_pred             hhHHhHHHHHHHc---cCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            3444455666666   89999999999999999999999999999999 99999988888877777766654 4555666


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhh
Q psy15539        165 AGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLML  240 (333)
Q Consensus       165 ~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  240 (333)
                      +.-++.|+..+.........+++ .-++.+..+.+++...+.+|..+|..+++..    ++....++.+++.++.++..+
T Consensus       305 ~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~  383 (394)
T COG2814         305 ALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLAL  383 (394)
T ss_pred             HHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence            66777888877766666666777 4467788999998888888888888887776    777888888877777655544

>KOG2504|consensus

Probab=99.18  E-value=2.2e-10  Score=105.74  Aligned_cols=156  Identities=16%  Similarity=0.184  Sum_probs=137.3

Q ss_pred             hccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccc--hhHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy15539         85 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG--RKNTMLLLAVPTLVGWGLIIWSQSVIM  162 (333)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~  162 (333)
                      .......+|.+.++   .+.+..+...+.++..+...++.++.|+++|+..  ++.+..++.++.+++.+.+.+..+++.
T Consensus       314 ~~~p~~~l~~~~~~---~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~  390 (509)
T KOG2504|consen  314 FNVPFVYLPSYAKS---LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVG  390 (509)
T ss_pred             HHHHHHHHHHHHhh---cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            33444557888887   9999999999999999999999999999999988  455666788888888888999999999


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHH
Q psy15539        163 FCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-----SVYGLSIICALLPIFFVG  237 (333)
Q Consensus       163 ~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  237 (333)
                      ++..-.+.|++.|.........+.|+.+.++-..+.|+.....+++.+++|++++++     +|...|+.+++..++...
T Consensus       391 l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~  470 (509)
T KOG2504|consen  391 LIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAV  470 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHH
Confidence            999999999999998888888999999999999999999999999999999999877     588899999988888776


Q ss_pred             Hhhccc
Q psy15539        238 LMLLMP  243 (333)
Q Consensus       238 ~~~~~~  243 (333)
                      .++..+
T Consensus       471 ~~~~~~  476 (509)
T KOG2504|consen  471 LLLILR  476 (509)
T ss_pred             HHHHhH
Confidence            666655

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.18  E-value=2.1e-10  Score=100.07  Aligned_cols=167  Identities=14%  Similarity=0.101  Sum_probs=122.8

Q ss_pred             HHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhcc--chhHHHHHHHHHH
Q psy15539         70 AALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTV--GRKNTMLLLAVPT  147 (333)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~  147 (333)
                      .++.+++.++........+..-.|.|+.+  ..|.+..++++..+.+-++.+.|.+++|+++||+  |||....+.+.+.
T Consensus       253 ~iW~la~a~vfvYivR~gi~dW~p~YL~e--~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~  330 (448)
T COG2271         253 LIWLLALANVFVYVVRYGINDWGPLYLSE--VKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL  330 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHH--hcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            44555566655555555555567777776  4788999999999999999999999999999985  6777666544444


Q ss_pred             H-HHHHHHHHHh--hHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHH-HHHHHHHHhHHH----
Q psy15539        148 L-VGWGLIIWSQ--SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTA-GILFVYAVGSWA----  219 (333)
Q Consensus       148 ~-~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~-g~~~~~~~~~~~----  219 (333)
                      . ++.+....++  |+....++.++.|+..-+..-+......|..|++--|++.|+.+.+.-+ |...+....+++    
T Consensus       331 i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~  410 (448)
T COG2271         331 ITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTW  410 (448)
T ss_pred             HHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecC
Confidence            3 3334444444  4577888888999877766667777788999999999999998776666 777766665555    


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy15539        220 SVYGLSIICALLPIFFVGL  238 (333)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~  238 (333)
                      +|...|++..+.+++..+.
T Consensus       411 gW~g~Fi~~~~~a~l~~ll  429 (448)
T COG2271         411 GWDGGFIVLSIAALLAILL  429 (448)
T ss_pred             CCcchHHHHHHHHHHHHHH
Confidence            8888887776666654433

>PRK09848 glucuronide transporter; Provisional

Probab=99.17  E-value=1.2e-09  Score=100.38  Aligned_cols=126  Identities=20%  Similarity=0.231  Sum_probs=97.4

Q ss_pred             hhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHH
Q psy15539         92 GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ--SVIMFCAGRLL  169 (333)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l  169 (333)
                      .|.+.++  .+|.+....++......++.+++.++.+++.||+|+|+.+.++.++.+++.++..+.+  +.+.+++..++
T Consensus       251 ~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l  328 (448)
T PRK09848        251 SLFYVRY--VLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAI  328 (448)
T ss_pred             heeeEee--ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH
Confidence            4545444  2565555445544545677888999999999999999999999988888877776643  56666777888


Q ss_pred             HhhhhhhhhhhhhhhhcccCCCc-------chhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        170 TGFGGGSFAVVVPMYTAEIAETE-------IRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       170 ~G~~~g~~~~~~~~~~~e~~~~~-------~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      .|+|.+...+...+..+|..|.+       .+|...++.+....+|..+++.+.+.+
T Consensus       329 ~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~  385 (448)
T PRK09848        329 ASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI  385 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888654       458889999999999999888876554

>KOG0253|consensus

Probab=99.17  E-value=4.6e-10  Score=95.96  Aligned_cols=129  Identities=19%  Similarity=0.094  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcch
Q psy15539        115 SMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIR  194 (333)
Q Consensus       115 ~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~r  194 (333)
                      +..+..+-|.++.+++.||+|||+.+....++++++.++...+.+-....+.-+..-++..+.+...+.|..|.+|++.|
T Consensus       389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavR  468 (528)
T KOG0253|consen  389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVR  468 (528)
T ss_pred             HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhh
Confidence            34556778999999999999999999999999999999988876544444444444444455667788899999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHhhccc
Q psy15539        195 GTLGTYFQLQCTAGILFVYAVGSWA--SVYGLSIICALLPIFFVGLMLLMP  243 (333)
Q Consensus       195 g~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  243 (333)
                      +++.|.......+|+++.|.++-..  .-..+..+.+.+++++.++..++|
T Consensus       469 atgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffP  519 (528)
T KOG0253|consen  469 ATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFP  519 (528)
T ss_pred             hcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeee
Confidence            9999999999999999999998333  233445555666666655666665

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.16  E-value=1.2e-09  Score=90.86  Aligned_cols=146  Identities=18%  Similarity=0.177  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q psy15539         68 YMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPT  147 (333)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  147 (333)
                      |.......+.....| ..+.++.+-|.+.+.   +|+|.++...+.+.-.+|..+ +++.|.+.|++|.+.++.+|.+..
T Consensus         2 W~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~---l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~   76 (250)
T PF06813_consen    2 WLSLVASIWVQLCSG-TTYTFSAYSPQLKSR---LGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLG   76 (250)
T ss_pred             hhhHHHHHHHHHhcC-cccchhhhhHHHHHH---hCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHH
Confidence            333333333333333 344555667888887   999999999999999999886 588899999999999999999999


Q ss_pred             HHHHHHHHHH-------hhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        148 LVGWGLIIWS-------QSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       148 ~~~~~~~~~~-------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      .++..+...+       .+.+.+.+..++.|.+.+...+.......+.|| +.||++.|+.-...++++.+-..+...+
T Consensus        77 ~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~  154 (250)
T PF06813_consen   77 FVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAF  154 (250)
T ss_pred             HHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHH
Confidence            9998877653       356777777888888776666666666667887 5899999999999999888776665554

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.16  E-value=1.1e-09  Score=99.47  Aligned_cols=125  Identities=12%  Similarity=0.095  Sum_probs=99.3

Q ss_pred             hhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHH
Q psy15539         92 GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS-----QSVIMFCAG  166 (333)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~  166 (333)
                      .|.+..+  .+|.++.+.++......++..++.++.|+++||+|+|+.+.++.++.+++.++..+.     .+...+++.
T Consensus       238 ~p~~~~~--~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  315 (406)
T PRK15402        238 SPVILIS--GEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAG  315 (406)
T ss_pred             hHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence            4555433  278888888888888888999999999999999999999998888877777766553     245666777


Q ss_pred             HHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        167 RLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       167 ~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      .++.|++.+...+........ .++++||+..+..+....+|..+++.+++++
T Consensus       316 ~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l  367 (406)
T PRK15402        316 LSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHA  367 (406)
T ss_pred             HHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            888999888777666555543 3458999999999999999999999988877

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.16  E-value=4.3e-10  Score=98.16  Aligned_cols=144  Identities=17%  Similarity=0.175  Sum_probs=127.7

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhh
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVV  181 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~  181 (333)
                      +|++..+..++.....+..++|+++.|+|.||+|.|+++.++.+++.+.++...+......+.++..+.|...|+.++..
T Consensus       283 ~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~S  362 (438)
T COG2270         283 LGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASS  362 (438)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHH
Confidence            99999999999999999999999999999999999999999999999998888887777788888999999999999999


Q ss_pred             hhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHhhcccCC
Q psy15539        182 PMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-----SVYGLSIICALLPIFFVGLMLLMPES  245 (333)
Q Consensus       182 ~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~e~  245 (333)
                      -++.++..|+++-+...|++++....++.++|.+-+.+     .-|..+....++.++.++..++.|+.
T Consensus       363 RSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         363 RSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence            99999999999999999999999999999999997776     45566666566666666666666654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.15  E-value=4.5e-10  Score=104.27  Aligned_cols=128  Identities=12%  Similarity=0.095  Sum_probs=108.0

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH----HhhHHHHHH
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW----SQSVIMFCA  165 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~  165 (333)
                      ..+|.+.++  .+|.++.+.+++.....++..++.++.|++.||+|||+.+.++.++.+++..+..+    ..+.+.+..
T Consensus       276 ~~~p~~~~~--~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (485)
T TIGR00711       276 YLLPLYLQQ--VLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIAL  353 (485)
T ss_pred             HHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Confidence            346666654  37889999999999999999999999999999999999999998888888877663    124566667


Q ss_pred             HHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        166 GRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       166 ~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      ..++.|++.+...+.......+..|+++||++.++.+....+|..+++.+.+.+
T Consensus       354 ~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~  407 (485)
T TIGR00711       354 PQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTI  407 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788899999888777777778889999999999999999999999999887766

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.15  E-value=4e-10  Score=103.36  Aligned_cols=154  Identities=12%  Similarity=0.022  Sum_probs=96.3

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH---HHHHHHHHH--hhHHHHH
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTL---VGWGLIIWS--QSVIMFC  164 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~~~~--~~~~~~~  164 (333)
                      ...|.+.++  ..|.+..+.++....+.++..++.++.|+++||+|+++....+..+..   ++.+.+...  .+.+...
T Consensus       272 ~~~p~~l~~--~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (438)
T TIGR00712       272 DWSPTYLKE--VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDM  349 (438)
T ss_pred             HhHHHHHHH--ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence            346667665  268888889999999999999999999999999975432222322221   111211121  2333333


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHH-HHHHHHHhHHH----HHHHHHHHHHHHHHHH-HHH
Q psy15539        165 AGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAG-ILFVYAVGSWA----SVYGLSIICALLPIFF-VGL  238 (333)
Q Consensus       165 ~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g-~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~  238 (333)
                      +..++.|++..+..........|.+|++.||++.|+.+....+| ..++|.+.+++    +|...+++.++..++. +..
T Consensus       350 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~  429 (438)
T TIGR00712       350 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL  429 (438)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            34444554432222222345679999999999999987766665 46777777665    6777777766655554 334


Q ss_pred             hhcccCC
Q psy15539        239 MLLMPES  245 (333)
Q Consensus       239 ~~~~~e~  245 (333)
                      .+++||.
T Consensus       430 ~~~~~~~  436 (438)
T TIGR00712       430 IVVMIGE  436 (438)
T ss_pred             HHHHhhc
Confidence            4455654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.14  E-value=3.8e-10  Score=100.54  Aligned_cols=114  Identities=12%  Similarity=0.246  Sum_probs=94.3

Q ss_pred             hhhhhhhhcCCcccccCchhHHHHHHHHH-HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH----------
Q psy15539         89 SPAGDRLIAGEYPFLVTESDLSFIGSSMA-LGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS----------  157 (333)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------  157 (333)
                      ....|.+.++   .|.+..+.+.+..+.. ++..++.+++|++.||+|||+.+.++.++.+++..+..+.          
T Consensus       229 ~~~~~~~l~~---~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (356)
T TIGR00901       229 TVLTTLFLLD---MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGIT  305 (356)
T ss_pred             HHHHHHHHHH---cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence            3446777776   8899999988887665 6788999999999999999999998888887776655543          


Q ss_pred             -hhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHH
Q psy15539        158 -QSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQC  205 (333)
Q Consensus       158 -~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~  205 (333)
                       ++.+.+..+.++.+++.+...+...+++.|.+|+++||+..++.+...
T Consensus       306 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  354 (356)
T TIGR00901       306 FPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS  354 (356)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence             345667777889999999999999999999999999999999877654

>PRK11462 putative transporter; Provisional

Probab=99.13  E-value=2.6e-09  Score=98.44  Aligned_cols=135  Identities=14%  Similarity=0.059  Sum_probs=100.5

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhc----cchhHHH-HHHHHHHHHHHHHHHHHhh------HHHHHHHHHHH
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDT----VGRKNTM-LLLAVPTLVGWGLIIWSQS------VIMFCAGRLLT  170 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~Grr~~l-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~  170 (333)
                      .|+++..+|.+..+.-+.-++..|+.|.++||    +||||.. +++.+..+++.+++...++      ...+.+.-++.
T Consensus        40 ~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~  119 (460)
T PRK11462         40 FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLL  119 (460)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence            89999999999999999999999999999995    7887554 4577777777776655442      34455556667


Q ss_pred             hhhhhhhhhhhhhhhcccCC-CcchhhHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHH
Q psy15539        171 GFGGGSFAVVVPMYTAEIAE-TEIRGTLGTYFQLQCTAGILFVYAVGSWA-----------SVYGLSIICALLPIFFV  236 (333)
Q Consensus       171 G~~~g~~~~~~~~~~~e~~~-~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~  236 (333)
                      .++.........++..|..+ +++|.+..++...+..+|..+++.+...+           +|+....+.++++++..
T Consensus       120 ~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~  197 (460)
T PRK11462        120 TLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML  197 (460)
T ss_pred             HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence            78888788888888999876 88999999998888887776665553221           45655555555554433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.13  E-value=1.4e-09  Score=100.64  Aligned_cols=153  Identities=15%  Similarity=0.011  Sum_probs=100.7

Q ss_pred             cchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHH--------HHHHHHH--HHHHHHHHH
Q psy15539         87 WTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM--------LLLAVPT--LVGWGLIIW  156 (333)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l--------~~~~~~~--~~~~~~~~~  156 (333)
                      .....+|.+..+  .+|.+..+.+++.++..++..++.++.|+++||+++|+..        ..+....  ++..+....
T Consensus       279 ~~~~~lp~~l~~--~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (465)
T TIGR00894       279 ILPTYLPTFISW--VLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY  356 (465)
T ss_pred             HHHHHHHHHHHH--HhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333456777654  3788999999999999999999999999999998765321        1111111  111111112


Q ss_pred             -HhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHH
Q psy15539        157 -SQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-------SVYGLSIIC  228 (333)
Q Consensus       157 -~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~  228 (333)
                       ..+....+++-++.+.+.++..+.......|..|. .+|.+.++.+....+|+.++|.+.+++       .|...|++.
T Consensus       357 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~  435 (465)
T TIGR00894       357 LSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIM  435 (465)
T ss_pred             cCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHH
Confidence             22333344444555555555555554555566654 899999999999999999999887754       377888888


Q ss_pred             HHHHHHHHHHhhcc
Q psy15539        229 ALLPIFFVGLMLLM  242 (333)
Q Consensus       229 ~~~~~~~~~~~~~~  242 (333)
                      ++..++..+...++
T Consensus       436 ~~~~~i~~i~~~~~  449 (465)
T TIGR00894       436 AFVNILCVIFYLIF  449 (465)
T ss_pred             HHHHHHHHHHeeee
Confidence            77777765555444

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.12  E-value=3.8e-09  Score=94.90  Aligned_cols=122  Identities=17%  Similarity=0.203  Sum_probs=94.5

Q ss_pred             hhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHH
Q psy15539         92 GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS-----QSVIMFCAG  166 (333)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~  166 (333)
                      .|.+.++  .+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+.++..++.+++.+.     .+...++..
T Consensus       229 ~~~~~~~--~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (385)
T TIGR00710       229 APFVYID--IMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGP  306 (385)
T ss_pred             ChHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            4545442  278888999999999999999999999999999999999988887777776665543     234455556


Q ss_pred             HHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHH-HHHHHHHHHHh
Q psy15539        167 RLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQC-TAGILFVYAVG  216 (333)
Q Consensus       167 ~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~-~~g~~~~~~~~  216 (333)
                      .++.|++.+...+.......|..| ++|+++.++.+... .+|.+.++.++
T Consensus       307 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       307 MMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            778889888888888888888886 67899999876554 45666666655

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.12  E-value=2.1e-09  Score=97.41  Aligned_cols=126  Identities=11%  Similarity=0.023  Sum_probs=102.4

Q ss_pred             hhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy15539         91 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVD-TVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLL  169 (333)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  169 (333)
                      .+|.+.++   .+.++.+.+++.+...++...+..+.+.+.| |++.++.+..+.++.+++.+++++.++.+.+.+..++
T Consensus       230 ~~p~~~~~---~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l  306 (400)
T PRK11646        230 MLPIMVND---IAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICL  306 (400)
T ss_pred             hhhhhHHh---hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            46777766   5556778888888877777666665566655 5776777778888888888777777887777777788


Q ss_pred             HhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        170 TGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       170 ~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      .|++.+...+...+++.+..|+++||++.++.+....+|..++|.+++++
T Consensus       307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l  356 (400)
T PRK11646        307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWL  356 (400)
T ss_pred             HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHH
Confidence            88888888888899999999999999999999999999999999998887

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.12  E-value=8.7e-10  Score=100.25  Aligned_cols=143  Identities=10%  Similarity=0.050  Sum_probs=95.0

Q ss_pred             chhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHH-HHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy15539         88 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNT-MLLLAVPTLVGWGLIIWSQSVIMFCAG  166 (333)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (333)
                      +...+|.+.++ ...+.+..+.+.+.+...++..++.++.|+++||++||+. +....++.+++.++.....+....+++
T Consensus       261 ~~~~~p~~l~~-~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (412)
T TIGR02332       261 INIWTPQILQS-FNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLG  339 (412)
T ss_pred             HHHHHHHHHHh-cCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            44457778765 0135677788999999999999999999999999997775 333444444433222222222222222


Q ss_pred             HHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHH
Q psy15539        167 RLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-----SVYGLSIICALL  231 (333)
Q Consensus       167 ~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~  231 (333)
                      -++.+++.....+.......|.+|++.|+++.|+.+....+|.+++|.+.+.+     +|...+++.++.
T Consensus       340 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       340 IIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            22333333333344445567889999999999999999999999999887665     477776665544

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10054 putative transporter; Provisional

Probab=99.11  E-value=1.8e-09  Score=97.54  Aligned_cols=132  Identities=16%  Similarity=0.057  Sum_probs=103.6

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHhhhhhhhhhh
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS-QSVIMFCAGRLLTGFGGGSFAVV  180 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~  180 (333)
                      .+.+....+++.+...+.....+++.|.+.||+++|+.+..+.++.+++.+...+. .+.+.+.+..++.|+|.+...|.
T Consensus       239 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~  318 (395)
T PRK10054        239 SDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPG  318 (395)
T ss_pred             cchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhh
Confidence            56666677888888888888888899999999999999999988888887777654 56666777888999999888888


Q ss_pred             hhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHH
Q psy15539        181 VPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIF  234 (333)
Q Consensus       181 ~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~  234 (333)
                      ....+.+..|++.|+++.+..+ ...+|..++|.+++++    +....+++.+....+
T Consensus       319 ~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~  375 (395)
T PRK10054        319 EYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVA  375 (395)
T ss_pred             HHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHH
Confidence            8889999999999999988655 4557888888888777    444555554444333

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.11  E-value=6e-09  Score=94.20  Aligned_cols=139  Identities=10%  Similarity=0.069  Sum_probs=103.6

Q ss_pred             hhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy15539         92 GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTG  171 (333)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  171 (333)
                      .|.+.++   +|.+..+.+.+...+.++..++.++.+++.||.+++..+....+......++....++.+.+.+..++.|
T Consensus       240 ~p~~~~~---~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G  316 (394)
T PRK10213        240 RPVYMNL---AGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWG  316 (394)
T ss_pred             HHHHHHh---cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            4667666   8999989999999999999999999999999965443343333334444444455567777778889999


Q ss_pred             hhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHH
Q psy15539        172 FGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIF  234 (333)
Q Consensus       172 ~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~  234 (333)
                      ++.+...+...+++.+..| +++++..++......+|..+|+.+++++    +++..++..+++.++
T Consensus       317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~  382 (394)
T PRK10213        317 LTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLL  382 (394)
T ss_pred             HHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence            9999888888888888887 4566777777777788888888888877    566666665554443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.11  E-value=3.4e-10  Score=100.90  Aligned_cols=142  Identities=18%  Similarity=0.088  Sum_probs=119.4

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhhhhhhhh
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTLVGWGLIIWSQ--SVIMFCAGRLLTGFGGGSFA  178 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~~  178 (333)
                      +|++++++.-+.+.+..---+...++||++|| +|+|+.++.|.++++++.++.+...  +...++++-.+.++|.|..-
T Consensus        56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K  135 (498)
T COG3104          56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK  135 (498)
T ss_pred             CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence            56898888777777766666888899999998 7999999999999999999999884  77888888888899999999


Q ss_pred             hhhhhhhcccCCCcc--hhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhhccc
Q psy15539        179 VVVPMYTAEIAETEI--RGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLMLLMP  243 (333)
Q Consensus       179 ~~~~~~~~e~~~~~~--rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  243 (333)
                      +...++++|.+|++.  |-.+.+++.++..+|++++|++.+++    +|...|...++-..+.++.+++.+
T Consensus       136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            999999999997644  45567778888889999999998877    788888888887777766666544

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.10  E-value=3.8e-09  Score=95.08  Aligned_cols=141  Identities=13%  Similarity=0.084  Sum_probs=100.3

Q ss_pred             hhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHh
Q psy15539         93 DRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW-SQSVIMFCAGRLLTG  171 (333)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~G  171 (333)
                      |.+.+.   .|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+.++.+++.++... .++.+...+..++.+
T Consensus       224 ~~~~~~---~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  300 (382)
T PRK10091        224 PYMMFI---SGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICC  300 (382)
T ss_pred             HHHHHh---cCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            444444   7889999999999999999999999999999999999999888887777765543 444455555666666


Q ss_pred             hhhhhhhhhhh-hhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHH
Q psy15539        172 FGGGSFAVVVP-MYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-----SVYGLSIICALLPIFFVGL  238 (333)
Q Consensus       172 ~~~g~~~~~~~-~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  238 (333)
                      ++.++..+... ....+..+++.++.+  ..+....+|..++|.+++++     +|+..+.+.+++.++.+..
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~  371 (382)
T PRK10091        301 AGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS  371 (382)
T ss_pred             HHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence            66554444333 334444555555544  34567788888999888876     5777777777666654433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.10  E-value=3.2e-09  Score=94.85  Aligned_cols=149  Identities=12%  Similarity=0.067  Sum_probs=97.1

Q ss_pred             hhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccch---hHHHHH-HHHHHHHHHHHHHHHhhHHHHH
Q psy15539         89 SPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR---KNTMLL-LAVPTLVGWGLIIWSQSVIMFC  164 (333)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Gr---r~~l~~-~~~~~~~~~~~~~~~~~~~~~~  164 (333)
                      ...+|.+.++   .|.+.. .+...++..++..++   .++++||..|   |+.... ..++.++...+..+..+....+
T Consensus       212 ~~wlp~~L~~---~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~  284 (368)
T TIGR00903       212 AIWLEAALRP---AGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALF  284 (368)
T ss_pred             HHHHHHHHHH---CCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHH
Confidence            3457888876   666654 555555555554444   4677777654   333332 3344444444444444444445


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHhhcc
Q psy15539        165 AGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA--SVYGLSIICALLPIFFVGLMLLM  242 (333)
Q Consensus       165 ~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  242 (333)
                      ++-++.|++....++..+++.+|.+|++.||++.|+.+....+|+.++|.+.+.+  +....|.+.+++.++..+..+.+
T Consensus       285 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~  364 (368)
T TIGR00903       285 AFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIALLL  364 (368)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhC
Confidence            5556677777777788889999999999999999999999999998888777654  45566666666666655444443


Q ss_pred             cC
Q psy15539        243 PE  244 (333)
Q Consensus       243 ~e  244 (333)
                      ++
T Consensus       365 ~~  366 (368)
T TIGR00903       365 PN  366 (368)
T ss_pred             CC
Confidence            43

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.10  E-value=1.3e-09  Score=101.53  Aligned_cols=127  Identities=12%  Similarity=0.029  Sum_probs=107.7

Q ss_pred             hhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHH
Q psy15539         91 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS---QSVIMFCAGR  167 (333)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~  167 (333)
                      ..|.+.+.  ..|.++.+.++....+.++..++.++.|++.||+|+|+.+..+.++.+++.+++...   .+.+...+..
T Consensus       281 ~~~~~lq~--v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  358 (495)
T PRK14995        281 LMAQELQF--VHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLM  358 (495)
T ss_pred             HHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            45555443  278999999999999999999999999999999999999988888888777665442   3555566778


Q ss_pred             HHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        168 LLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       168 ~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      ++.|++.|...+.....+.+..|+++++.+.++.+....+|..+|+.+.+.+
T Consensus       359 ~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i  410 (495)
T PRK14995        359 ALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL  410 (495)
T ss_pred             HHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999998888888888999999999999999999999999999888776

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.09  E-value=1.3e-09  Score=111.62  Aligned_cols=127  Identities=10%  Similarity=-0.076  Sum_probs=105.5

Q ss_pred             hhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH-------------
Q psy15539         91 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS-------------  157 (333)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------------  157 (333)
                      .+|.+..+  .+|.+....+++.+++.+|.+++.++.|+++|+.++++.+..+.++.+++.+.+.+.             
T Consensus       247 ~~p~~~~~--~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  324 (1140)
T PRK06814        247 QLPLLAKE--TLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKS  324 (1140)
T ss_pred             HhHHHHHH--HcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccc
Confidence            45666654  378899999999999999999999999999998888777666666665555444432             


Q ss_pred             -------hhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        158 -------QSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       158 -------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                             .+.+.++++.++.|++.+...+...+++.+.+|++.||+++|+.++...+|..+++++.+.+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l  393 (1140)
T PRK06814        325 ILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALL  393 (1140)
T ss_pred             hhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence                   56677788888999999999989999999999999999999999999999998888887666

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.09  E-value=3.6e-09  Score=96.76  Aligned_cols=128  Identities=16%  Similarity=0.156  Sum_probs=105.3

Q ss_pred             hhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHH
Q psy15539         89 SPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ--SVIMFCAG  166 (333)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~  166 (333)
                      ....+.+.+.  ..+.+ ...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++..+.+  +.+.+++.
T Consensus       245 ~~~~~y~~~~--vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  321 (428)
T PF13347_consen  245 NTFLPYYFTY--VLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLIL  321 (428)
T ss_pred             hhHHHHHHHH--HhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            3334445444  13333 5678888889999999999999999999999999999999999999888876  89999999


Q ss_pred             HHHHhhhhhhhhhhhhhhhcccCCC-------cchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        167 RLLTGFGGGSFAVVVPMYTAEIAET-------EIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       167 ~~l~G~~~g~~~~~~~~~~~e~~~~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      .++.|++.+...+...++++|..+.       +..|...+..+....+|..+++.+.+.+
T Consensus       322 ~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~  381 (428)
T PF13347_consen  322 FILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL  381 (428)
T ss_pred             HHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999873       3347788888888888888887776544

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.09  E-value=9.8e-10  Score=97.34  Aligned_cols=123  Identities=21%  Similarity=0.206  Sum_probs=102.8

Q ss_pred             chhhhhhh-hcCCcccccC-chhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH---HhhHHH
Q psy15539         88 TSPAGDRL-IAGEYPFLVT-ESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW---SQSVIM  162 (333)
Q Consensus        88 ~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~  162 (333)
                      .....|.+ .+.   +|.+ ..+.+.+.+...++..++.++.|++.||+|+|+.+.+......+..+...+   ..+...
T Consensus       225 ~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (352)
T PF07690_consen  225 FSFFLPLYLQEV---LGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVW  301 (352)
T ss_dssp             HHHHHHHHCCHH---HHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHH
T ss_pred             hhcccchhhhhc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            44456666 444   8888 788999999999999999999999999999988877777666666555543   335567


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHH
Q psy15539        163 FCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVY  213 (333)
Q Consensus       163 ~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~  213 (333)
                      .++..++.|++.+...+....++.|.+|+++||++.++.+....+|..++|
T Consensus       302 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  302 LIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            777888899999999999999999999999999999999999999999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.08  E-value=6.3e-09  Score=93.63  Aligned_cols=156  Identities=18%  Similarity=0.200  Sum_probs=117.9

Q ss_pred             ccchhhhhhhhcCCcccc-cCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH-hhHHHH
Q psy15539         86 GWTSPAGDRLIAGEYPFL-VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS-QSVIMF  163 (333)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~  163 (333)
                      ..+....+.+.++   .| .+....+.+.++..++-++.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+..
T Consensus       224 ~~~~~f~~~yl~~---~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~  300 (400)
T PF03825_consen  224 AAYYTFFSIYLQE---LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFI  300 (400)
T ss_pred             HHHHHHHHHHHHH---cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence            3333445666776   66 666777877788888888899999999999999999999999998888888776 444433


Q ss_pred             HHH----HHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHH-HHHHHHHHHHHHhHHH----------HHHHHHHHH
Q psy15539        164 CAG----RLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQL-QCTAGILFVYAVGSWA----------SVYGLSIIC  228 (333)
Q Consensus       164 ~~~----~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~-~~~~g~~~~~~~~~~~----------~~~~~~~~~  228 (333)
                      .+.    ..+.|+..+..+.....++.+..|++.|+++.++++. ..++|..++..+++++          .|...+.+.
T Consensus       301 ~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~  380 (400)
T PF03825_consen  301 VALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVF  380 (400)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence            333    4569999999999999999999999999999999664 6789999999999887          244455555


Q ss_pred             HHHHHHHHHH-hhcccC
Q psy15539        229 ALLPIFFVGL-MLLMPE  244 (333)
Q Consensus       229 ~~~~~~~~~~-~~~~~e  244 (333)
                      +++.++..+. .++++|
T Consensus       381 a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  381 AVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHHHHHHHhhccC
Confidence            5555443333 334444

>TIGR00896 CynX cyanate transporter

Probab=99.08  E-value=3.4e-09  Score=94.39  Aligned_cols=126  Identities=13%  Similarity=0.054  Sum_probs=98.0

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-GRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRL  168 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (333)
                      ..+|.+.++   .|.+..+.+.+.+...++.++++++.|++.||+ +||+.+.++.++.+++.+++.+..+..... ..+
T Consensus       218 ~~lp~~~~~---~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  293 (355)
T TIGR00896       218 GWLPAILIS---HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WAL  293 (355)
T ss_pred             HHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHH
Confidence            346777777   788999999999999999999999999999999 566677777777777776666655433222 456


Q ss_pred             HHhhhhhhhhhhhhhhhcccC-CCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        169 LTGFGGGSFAVVVPMYTAEIA-ETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       169 l~G~~~g~~~~~~~~~~~e~~-~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      +.|++.|..++...+.+.+.. +++.++...++.+....+|..++|.+.+++
T Consensus       294 l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l  345 (355)
T TIGR00896       294 VLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL  345 (355)
T ss_pred             HHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999888888777766554 456778888888887788888888887766

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.07  E-value=5.2e-09  Score=94.90  Aligned_cols=146  Identities=12%  Similarity=0.111  Sum_probs=97.3

Q ss_pred             hhhhcCCcccccCchhHHHHHHHHH-HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH---HHH-hhHHHHHHHH
Q psy15539         93 DRLIAGEYPFLVTESDLSFIGSSMA-LGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLI---IWS-QSVIMFCAGR  167 (333)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~~  167 (333)
                      +.+.++   .|.++.+.+++..... ++..++.++.|++.||+|+|+.+.++.++.++..+..   ++. ++.+.+++..
T Consensus       234 ~~l~~~---~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  310 (402)
T PRK11902        234 TFLIRG---AGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAI  310 (402)
T ss_pred             HHHHHh---cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            335555   8899999999886654 5688999999999999999998877776665554433   233 3444444443


Q ss_pred             ----HHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15539        168 ----LLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICALLPIFFVGLMLL  241 (333)
Q Consensus       168 ----~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (333)
                          +..|++.+...+....++.+.+|.+.++...+..+.+..+++.++..+....||+..|.+.++++++.++..+.
T Consensus       311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        311 GIENLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence                45666677778888888888888766654333333333333333434444448999888888887776555543

>PRK09848 glucuronide transporter; Provisional

Probab=99.06  E-value=4.4e-09  Score=96.75  Aligned_cols=116  Identities=15%  Similarity=0.175  Sum_probs=78.9

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhcc----chhHHH-HHHHHHHHHHHHHHHHHh-------hHHHHHHHHHH
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTV----GRKNTM-LLLAVPTLVGWGLIIWSQ-------SVIMFCAGRLL  169 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~----Grr~~l-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l  169 (333)
                      .|++..++|.+.+...+..++..++.|+++||.    |||+.. .++.+...+..+++...+       ....+++..++
T Consensus        39 ~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (448)
T PRK09848         39 AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMG  118 (448)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHH
Confidence            799999999999999999999999999999996    777755 555555554444432211       12334445567


Q ss_pred             HhhhhhhhhhhhhhhhcccC-CCcchhhHHHHHHHHH-----HHHHHHHHHHhH
Q psy15539        170 TGFGGGSFAVVVPMYTAEIA-ETEIRGTLGTYFQLQC-----TAGILFVYAVGS  217 (333)
Q Consensus       170 ~G~~~g~~~~~~~~~~~e~~-~~~~rg~~~~~~~~~~-----~~g~~~~~~~~~  217 (333)
                      .+++.+...+...++..+.. ++++|....+.-..+.     .++..++|.++.
T Consensus       119 ~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~  172 (448)
T PRK09848        119 LGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN  172 (448)
T ss_pred             HHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77778777777777777765 4567888766654332     244445555544

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.05  E-value=6.8e-09  Score=93.79  Aligned_cols=129  Identities=16%  Similarity=0.128  Sum_probs=101.3

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhh
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVV  181 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~  181 (333)
                      +|.++.+.|++.+...+|..+++++.+++.||.++|+.+..+.+ .++..++..+.++.+...+..++.|++.+...+..
T Consensus       236 lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~  314 (393)
T PRK11195        236 LGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPM  314 (393)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhH
Confidence            78899999999999999999999999999999999988877753 34444455556677767777888999988888778


Q ss_pred             hhhhcccCCCcc-hhhHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHH
Q psy15539        182 PMYTAEIAETEI-RGTLGTYFQLQCTAGILFVYAVGSWA-----SVYGLSIICALL  231 (333)
Q Consensus       182 ~~~~~e~~~~~~-rg~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~  231 (333)
                      .+.+.+..|++. +|++.++.+....+|..++..+.+.+     .+...+...+.+
T Consensus       315 ~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (393)
T PRK11195        315 NALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLL  370 (393)
T ss_pred             HHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            888888766655 79999999999999998888887765     334444444444

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.04  E-value=3.3e-08  Score=91.58  Aligned_cols=115  Identities=10%  Similarity=0.133  Sum_probs=89.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHhhhhhhhhh
Q psy15539        105 TESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW-----SQSVIMFCAGRLLTGFGGGSFAV  179 (333)
Q Consensus       105 ~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~~g~~~~  179 (333)
                      +....+++.+...++.+++.+++++++||+|+|+.+.++.++.+++.+...+     ..+.+.+++.-++.|++.+...+
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~  343 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV  343 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            4456677777777889999999999999999999999888777766555433     23566667777888999999999


Q ss_pred             hhhhhhcccCC-------CcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        180 VVPMYTAEIAE-------TEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       180 ~~~~~~~e~~~-------~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      ...++++|..+       .+..|...+......-+|..+++.+.+++
T Consensus       344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~  390 (473)
T PRK10429        344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV  390 (473)
T ss_pred             HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999865       33346677888888888888887776654

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.04  E-value=1.7e-09  Score=96.06  Aligned_cols=152  Identities=16%  Similarity=0.144  Sum_probs=84.4

Q ss_pred             hccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH--HHHHHH-HHH----
Q psy15539         85 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTL--VGWGLI-IWS----  157 (333)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~--~~~~~~-~~~----  157 (333)
                      .+...+..|.+.++  ..|++.++.|.+.++..+..++.+++.|.++||+|.||-++....+..  .+.+.. .+.    
T Consensus        23 ~gi~~pF~~iWL~~--~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~  100 (412)
T PF01306_consen   23 WGIFLPFFPIWLTQ--VAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQ  100 (412)
T ss_dssp             HHHHHHHHHHHHHH--HH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHcc--ccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555667777764  279999999999999999999999999999999997776554332222  222221 222    


Q ss_pred             hhHH-HHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHH
Q psy15539        158 QSVI-MFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA---SVYGLSIICALLPI  233 (333)
Q Consensus       158 ~~~~-~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~  233 (333)
                      .|.+ ..+++-+..|++.....++.-+++.+..  +..+.-.|-.-...++|-+++..+++.+   +....+++..+.++
T Consensus       101 ~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~  178 (412)
T PF01306_consen  101 SNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAI  178 (412)
T ss_dssp             TT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHH
Confidence            2322 2222233334444444444444443332  2223334444456666666666666655   45566666655555


Q ss_pred             HHHHHhh
Q psy15539        234 FFVGLML  240 (333)
Q Consensus       234 ~~~~~~~  240 (333)
                      +..++.+
T Consensus       179 il~lll~  185 (412)
T PF01306_consen  179 ILLLLLL  185 (412)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4443333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.02  E-value=1.1e-08  Score=91.05  Aligned_cols=143  Identities=15%  Similarity=0.109  Sum_probs=118.7

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhh
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVV  181 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~  181 (333)
                      -+.++...|.+.+..-+.-++.-.+..++.+|+|.|+.++++.+++++=.++++++++.+.+.+.+.+.|+-.+......
T Consensus       254 ~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~  333 (412)
T PF01306_consen  254 AGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAA  333 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            55666778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccCCCcchhhHHHH-HHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHH-HHHhhcccC
Q psy15539        182 PMYTAEIAETEIRGTLGTY-FQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFF-VGLMLLMPE  244 (333)
Q Consensus       182 ~~~~~e~~~~~~rg~~~~~-~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~e  244 (333)
                      .-|+++.+|++..++...+ .+...++|..+.+.+++.+    |.+..|++.+.+.++. ++.++.++.
T Consensus       334 fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  334 FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK  402 (412)
T ss_dssp             HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence            9999999999998888877 5788888888888888877    7777887777776654 444555543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.02  E-value=1.9e-08  Score=90.21  Aligned_cols=116  Identities=8%  Similarity=-0.079  Sum_probs=82.6

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHhhhhhhh
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW----SQSVIMFCAGRLLTGFGGGSF  177 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~G~~~g~~  177 (333)
                      +|.++.+.+++.+...++..++.++.|++.||+|||+.+.++.++..+..+....    ..+.+.+.++..+.+.+.+..
T Consensus       225 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (377)
T PRK11102        225 NGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMI  304 (377)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence            7888899999999999999999999999999999999998887665444333222    123444444444444445555


Q ss_pred             hhhhhhhhcccCCCcchhhHHHHHHH-HHHHHHHHHHHHhHH
Q psy15539        178 AVVVPMYTAEIAETEIRGTLGTYFQL-QCTAGILFVYAVGSW  218 (333)
Q Consensus       178 ~~~~~~~~~e~~~~~~rg~~~~~~~~-~~~~g~~~~~~~~~~  218 (333)
                      ......++.|..| +.||.+.++.+. ...+|..+++.++..
T Consensus       305 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        305 SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5555666777766 789999988554 456777777776543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.00  E-value=1.8e-08  Score=91.06  Aligned_cols=127  Identities=13%  Similarity=0.011  Sum_probs=86.0

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhh
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVV  181 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~  181 (333)
                      +|.+..+.+.+.+...++.+++.++.+++.||+|||+.+.++.++..++.++..+..+....++...+.+.+.+...+..
T Consensus       234 ~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  313 (392)
T PRK10473        234 MGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGVA  313 (392)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            78888889999999999999999999999999999999999998888888877776555444444444444444333322


Q ss_pred             hhhhcccCCCcch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15539        182 PMYTAEIAETEIR-GTLGTYFQLQCTAGILFVYAVGSWASVYGLSIICAL  230 (333)
Q Consensus       182 ~~~~~e~~~~~~r-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  230 (333)
                        ...+..|.++| |.+.++...+..+|..+++.+.+..++.......+.
T Consensus       314 --~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~  361 (392)
T PRK10473        314 --MSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI  361 (392)
T ss_pred             --HHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence              33344454444 455555566666666666666665555443333333

>PRK09669 putative symporter YagG; Provisional

Probab=98.98  E-value=6.3e-08  Score=88.99  Aligned_cols=112  Identities=14%  Similarity=0.153  Sum_probs=85.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHhhhhhhhhhhhhhhh
Q psy15539        108 DLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW--SQSVIMFCAGRLLTGFGGGSFAVVVPMYT  185 (333)
Q Consensus       108 ~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~G~~~g~~~~~~~~~~  185 (333)
                      ..+.+.....++.+++.+++++++||+|+|+.+.++.++.++..+...+  ..+.+.+++..++.|++.+...+...+++
T Consensus       265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~  344 (444)
T PRK09669        265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF  344 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556667888889999999999999999998887766654443333  24666777788899999999999999999


Q ss_pred             cccCCC-------cchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        186 AEIAET-------EIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       186 ~e~~~~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      +|..+.       +..|...+..+....+|..+++.+++++
T Consensus       345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l  385 (444)
T PRK09669        345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI  385 (444)
T ss_pred             HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998752       3345667778778888888888777654

>KOG4686|consensus

Probab=98.97  E-value=6e-09  Score=86.20  Aligned_cols=143  Identities=18%  Similarity=0.206  Sum_probs=106.6

Q ss_pred             hhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHhhh
Q psy15539         95 LIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP-TLVGWGLIIWSQSVIMFCAGRLLTGFG  173 (333)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~G~~  173 (333)
                      +.+.   +|+|+...+.+.+....-..+..++.|.++||+|++...+.+..+ ..++.....++  .+.=++.-.++|+.
T Consensus       291 F~~r---fGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLs  365 (459)
T KOG4686|consen  291 FQKR---FGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLS  365 (459)
T ss_pred             HHHh---hCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhh
Confidence            4455   999999999999999999999999999999999999887765444 33444444332  22223455667777


Q ss_pred             hhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH--------HHHHHHHHHHHHHHHHHHHhhcc
Q psy15539        174 GGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA--------SVYGLSIICALLPIFFVGLMLLM  242 (333)
Q Consensus       174 ~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  242 (333)
                      ........+..++.+.|.++.|++.|..+....+|-.+.|++++.+        +-+..|++++.+++..+.+.+.+
T Consensus       366 ysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  366 YSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             HHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence            7776667788888999999999999999999999999999998876        23445555555555554444443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.97  E-value=2.7e-08  Score=89.45  Aligned_cols=155  Identities=16%  Similarity=0.154  Sum_probs=113.6

Q ss_pred             hhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhc----cchhHH-HHHHHHHHHHHHHHHHHHh-----
Q psy15539         89 SPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDT----VGRKNT-MLLLAVPTLVGWGLIIWSQ-----  158 (333)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~Grr~~-l~~~~~~~~~~~~~~~~~~-----  158 (333)
                      ...+..+..+  ..|+++..+|.+..+.=+--++..|+.|.+.||    +||+|. ++++.+-.++.++++..++     
T Consensus        32 ~~yLl~fYTd--v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~  109 (467)
T COG2211          32 VLYLLFFYTD--VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMT  109 (467)
T ss_pred             HHHHHHHHhc--ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccC
Confidence            3334444444  389999999999999999999999999999994    777655 5567788888888888765     


Q ss_pred             -hHHHHHHHHHHHhhhhhhhhhhhhhhhcccC-CCcchhhHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHH
Q psy15539        159 -SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIA-ETEIRGTLGTYFQLQCTAGILFVYAVGSWA-----------SVYGLS  225 (333)
Q Consensus       159 -~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~-~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~~~~  225 (333)
                       +....++...+.+++.........++.+|+. .+++|.+..+.-+.+..+|.++...+...+           +|+...
T Consensus       110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~  189 (467)
T COG2211         110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTA  189 (467)
T ss_pred             cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHH
Confidence             3455566678888888888888888888986 578999999998888888866654443322           677776


Q ss_pred             HHHHHHHHHHHHHhh-cccCC
Q psy15539        226 IICALLPIFFVGLML-LMPES  245 (333)
Q Consensus       226 ~~~~~~~~~~~~~~~-~~~e~  245 (333)
                      .+.+++.++..+..+ -.+|.
T Consensus       190 ~~~~vi~~i~~l~~~~~v~ER  210 (467)
T COG2211         190 LVLGVIGVILLLFCFFNVKER  210 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhhcc
Confidence            666666665444333 34443

>PRK10133 L-fucose transporter; Provisional

Probab=98.95  E-value=2.8e-08  Score=91.06  Aligned_cols=115  Identities=7%  Similarity=-0.114  Sum_probs=92.2

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhh
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVV  181 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~  181 (333)
                      +|.++.+.++....+.++..++.++.+++.||+|+|+++..+.++.+++.++..+.++. ..+...++.|++.+..+|..
T Consensus       290 ~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~  368 (438)
T PRK10133        290 PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTI  368 (438)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999988887777766665555553 23456778999999999999


Q ss_pred             hhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        182 PMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       182 ~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      .+...+.+|++ .+.+.++.... .+|..++|.+.+.+
T Consensus       369 ~s~a~~~~~~~-~~~as~l~~~~-~~g~~~~~~i~G~l  404 (438)
T PRK10133        369 FSLGIKNLGQD-TKYGSSFIVMT-IIGGGIVTPVMGFV  404 (438)
T ss_pred             HHHHHcccchh-hccchhHHhHH-hccchHHHHHHHHH
Confidence            99999988753 56777776543 35666666666655

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.93  E-value=1.2e-08  Score=89.19  Aligned_cols=144  Identities=17%  Similarity=0.147  Sum_probs=108.2

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh-------hHHH
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ-------SVIM  162 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------~~~~  162 (333)
                      ..+|.+.++  +++.++.+.+.+.+.+.+...+..+..|+++||+|.+|++.+....++++..+..+..       +...
T Consensus       239 ~~l~~~~~~--~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~  316 (417)
T COG2223         239 AYLPMYLVT--QFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVV  316 (417)
T ss_pred             HHHHHHHHH--hcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHH
Confidence            346666655  5999999999999999999999999999999999999999999988888888777642       3333


Q ss_pred             ----HHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHH
Q psy15539        163 ----FCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA-----SVYGLSIICALLPI  233 (333)
Q Consensus       163 ----~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~  233 (333)
                          ++...+..|+|.|..    +..+..++|. +-|.+.|+.....++|+...|..-+..     .+...|++.....+
T Consensus       317 ~~~~~l~l~~~~G~GnGsv----fk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~  391 (417)
T COG2223         317 FVAVFLALFVFAGLGNGSV----FKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYL  391 (417)
T ss_pred             HHHHHHHHHHHhccCcchh----eeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHH
Confidence                444555666666654    4455566653 678899999999999988877776655     47777777776666


Q ss_pred             HHHHHhh
Q psy15539        234 FFVGLML  240 (333)
Q Consensus       234 ~~~~~~~  240 (333)
                      +..+..+
T Consensus       392 ~a~v~~~  398 (417)
T COG2223         392 VALVLTW  398 (417)
T ss_pred             HHHHHHH
Confidence            6554443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.90  E-value=2.6e-08  Score=88.17  Aligned_cols=145  Identities=17%  Similarity=0.201  Sum_probs=115.4

Q ss_pred             cccCchhHH-HHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhh
Q psy15539        102 FLVTESDLS-FIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVV  180 (333)
Q Consensus       102 ~~~~~~~~~-~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~  180 (333)
                      .|++..++. -+.-...-.+++..++...+.|..|.|++++++.+...+..+++.+.++...+.+.-++.|++.+. ...
T Consensus        35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-eva  113 (412)
T PF01770_consen   35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVA  113 (412)
T ss_pred             cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHH
Confidence            677777653 455666677788888999999999999999999999999999999999999999999999999874 566


Q ss_pred             hhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHhhcccCChH
Q psy15539        181 VPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA------SVYGLSIICALLPIFFVGLMLLMPESPQ  247 (333)
Q Consensus       181 ~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~e~~~  247 (333)
                      .++|+-...|+++--++.+.......+|..++.+++..+      ++....++......++++..+++|..++
T Consensus       114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~  186 (412)
T PF01770_consen  114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKR  186 (412)
T ss_pred             HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            778888888888888888887777777777777777655      4556666666655666667777887654

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.89  E-value=4.4e-08  Score=89.06  Aligned_cols=146  Identities=14%  Similarity=0.035  Sum_probs=88.5

Q ss_pred             hhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH-H-----hhHHHHH
Q psy15539         91 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW-S-----QSVIMFC  164 (333)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~-----~~~~~~~  164 (333)
                      .+|.+.++  .+  +.........+..+...++.+++|+++||+|+|+++.++.++..++...... .     .+++.+.
T Consensus       274 ~lp~~~~~--~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~  349 (462)
T PRK15034        274 GFAMLAKT--QF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFY  349 (462)
T ss_pred             HHHHHHHH--Hc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence            45656554  12  2223333344456778889999999999999999999988877776543222 2     2345444


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhcccCCC---------------------cchhhHHHHHHHHHHHHHHHHHHHhHHH----
Q psy15539        165 AGRLLTGFGGGSFAVVVPMYTAEIAET---------------------EIRGTLGTYFQLQCTAGILFVYAVGSWA----  219 (333)
Q Consensus       165 ~~~~l~G~~~g~~~~~~~~~~~e~~~~---------------------~~rg~~~~~~~~~~~~g~~~~~~~~~~~----  219 (333)
                      +..+...++.|......+.++..++|+                     ++-|.+.|+.....++|+.+.|.+.+..    
T Consensus       350 ~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~  429 (462)
T PRK15034        350 AVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMT  429 (462)
T ss_pred             HHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHc
Confidence            444443344444444455556566653                     1456778888888888888888665544    


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhh
Q psy15539        220 -SVYGLSIICALLPIFFVGLML  240 (333)
Q Consensus       220 -~~~~~~~~~~~~~~~~~~~~~  240 (333)
                       ++...++...+..++.+++.|
T Consensus       430 g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        430 GSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHH
Confidence             345555555555554443333

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.86  E-value=1.7e-07  Score=87.36  Aligned_cols=126  Identities=11%  Similarity=0.047  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH----HHhhhccchhHHHHHHHHHHHHHHHHHHHHhh---------HHHHHHHHHHHhhhhh
Q psy15539        109 LSFIGSSMALGAVFGSPVV----GNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS---------VIMFCAGRLLTGFGGG  175 (333)
Q Consensus       109 ~~~~~~~~~~~~~i~~~~~----g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~G~~~g  175 (333)
                      .+++.++..+...+..++.    +++.+|++..+.+.+|.++.+++.+......+         .++++...++.|+|.+
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            4555666665555655555    66666776778889999999999888776654         4578889999999999


Q ss_pred             hhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH--------------HHHHHHHHHHHHHHH
Q psy15539        176 SFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA--------------SVYGLSIICALLPIF  234 (333)
Q Consensus       176 ~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~--------------~~~~~~~~~~~~~~~  234 (333)
                      ...|...+++.+..|++.||+++|++..+..+|..++..+....              +....|...++.+++
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  470 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAV  470 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888888888877766421              245666666655544

>PRK11043 putative transporter; Provisional

Probab=98.85  E-value=2.5e-07  Score=83.82  Aligned_cols=124  Identities=10%  Similarity=-0.005  Sum_probs=93.4

Q ss_pred             hhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH---H--HhhHHHHHHH
Q psy15539         92 GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII---W--SQSVIMFCAG  166 (333)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~--~~~~~~~~~~  166 (333)
                      .|.+.++   .|.+..+.++......++..++.++.+++.||+|+|+.+..+.+..+++.+.+.   .  .++...+++.
T Consensus       226 ~p~~~~~---~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (401)
T PRK11043        226 SPFILEQ---MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIP  302 (401)
T ss_pred             hHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            5667766   888988999888888889999999999999999999877665555444433322   2  2345555566


Q ss_pred             HHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        167 RLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       167 ~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      ..+.|++.+..++.......+..| ++||++.++.+.....+...++.+.+.+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l  354 (401)
T PRK11043        303 FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSAL  354 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            778888888888888887777776 5799999998887776767777666655

>KOG2532|consensus

Probab=98.85  E-value=1.6e-08  Score=92.34  Aligned_cols=168  Identities=12%  Similarity=0.001  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchh--------HH
Q psy15539         68 YMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRK--------NT  139 (333)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr--------~~  139 (333)
                      -..++.+.+..+........+...+|.|.++  -+|.+..+.|++.++..+...+..+++|.++||.-+|        |.
T Consensus       257 s~~vwai~~~~f~~~~~~~~l~~y~PtY~~~--VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rki  334 (466)
T KOG2532|consen  257 SPPVWAIWISAFGGNWGFYLLLTYLPTYLKE--VLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKI  334 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--HhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHH
Confidence            3445555566666666666667778999987  4899999999999999999999999999999988552        22


Q ss_pred             -HHHHHHHHHHHHHHHHHHhh--H----HHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHH
Q psy15539        140 -MLLLAVPTLVGWGLIIWSQS--V----IMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFV  212 (333)
Q Consensus       140 -l~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~  212 (333)
                       -.++....+++.+.+++.++  .    ..+.+.-.+.|+..++.+    .-..+. .+++-+..+|+.+....++++++
T Consensus       335 fn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~----~~~~~~-apq~a~~l~g~~~~~~~~~~~~~  409 (466)
T KOG2532|consen  335 FNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFY----KNHQDI-APQHAGFVMGIINFVGALAGFIA  409 (466)
T ss_pred             HHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhH----hhhhhc-cchHHHHHHHHHHHHHHHHHHHH
Confidence             23344555555555555542  1    111122223333322222    122222 56778999999999999999999


Q ss_pred             HHHhHHH-------HHHHHHHHHHHHHHHHHHHhhcc
Q psy15539        213 YAVGSWA-------SVYGLSIICALLPIFFVGLMLLM  242 (333)
Q Consensus       213 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  242 (333)
                      |.+.+.+       .|+..|++.+++.++..+.+.++
T Consensus       410 P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  410 PLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            9997655       89999999999888766555444

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.84  E-value=3.4e-07  Score=82.51  Aligned_cols=128  Identities=16%  Similarity=0.184  Sum_probs=99.4

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHH
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ--SVIMFCAGR  167 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~  167 (333)
                      ..+..|.+.  ..|.++....+.......+.+++.++...+.+|+|+|+++.++.++.+++.++..+.+  +.+.+++..
T Consensus       257 s~~~yy~~y--~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~  334 (467)
T COG2211         257 SIMVYYVTY--VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVAL  334 (467)
T ss_pred             hhhheeEEE--EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHH
Confidence            334444443  2555666677777888888888899999999999999999999999999999988876  778888888


Q ss_pred             HHHhhhhhhhhhhhhhhhcccCCC-------cchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        168 LLTGFGGGSFAVVVPMYTAEIAET-------EIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       168 ~l~G~~~g~~~~~~~~~~~e~~~~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      ++.+++.+...+..+++++|..+-       +.-|...+......-+|..++..+.++.
T Consensus       335 ~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~  393 (467)
T COG2211         335 IIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWI  393 (467)
T ss_pred             HHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988643       2225566666766667777766655544

>KOG0252|consensus

Probab=98.84  E-value=3.5e-09  Score=93.24  Aligned_cols=176  Identities=19%  Similarity=0.064  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHH--------HHH-HHHHHHHHHHHHHHHhhhccchhHH
Q psy15539         69 MAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSF--------IGS-SMALGAVFGSPVVGNLVDTVGRKNT  139 (333)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~i~~~~~g~l~dr~Grr~~  139 (333)
                      ..++..+..+|+.....+..+.....+.+.   .|+.+.....        ... +..++++.|-.+..++.|++|||+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~---ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~i  380 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSA---IGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYI  380 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHh---hccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHH
Confidence            555556666666555554444455556554   4544333222        111 1223344466777889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHh-hhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHH
Q psy15539        140 MLLLAVPTLVGWGLIIWSQS----VIMFCAGRLLTG-FGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYA  214 (333)
Q Consensus       140 l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~G-~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~  214 (333)
                      .+.|.+++++..+..+...|    ...++++..+.. ++.-+.......+.+|.+|.+.||++.|+.....-+|.+++..
T Consensus       381 q~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~  460 (538)
T KOG0252|consen  381 QLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF  460 (538)
T ss_pred             HHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence            99999999999888877654    112222222222 2223334455667799999999999999999998999888877


Q ss_pred             HhHHH---------HHHHHHHHHHHHHHHHHHHhhcccCChH
Q psy15539        215 VGSWA---------SVYGLSIICALLPIFFVGLMLLMPESPQ  247 (333)
Q Consensus       215 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~e~~~  247 (333)
                      .-.++         +.+..+++.+.+.++..+..+++||+.+
T Consensus       461 ~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~  502 (538)
T KOG0252|consen  461 GFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG  502 (538)
T ss_pred             HhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence            76554         5678899999999998888899999864

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.82  E-value=1.9e-07  Score=80.45  Aligned_cols=144  Identities=24%  Similarity=0.294  Sum_probs=110.7

Q ss_pred             ccchhhhhhhhcCCcccccCc--hhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhh--HH
Q psy15539         86 GWTSPAGDRLIAGEYPFLVTE--SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS--VI  161 (333)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~  161 (333)
                      .......+.+..+   .+.+.  ...++..+.+.++..++.++.|.++||+|||+.+..+.....++.+...+..+  ..
T Consensus        19 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
T COG0477          19 GLLSPALPLLLST---LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA   95 (338)
T ss_pred             chHHHHHHHHHHH---cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence            3334445555555   55444  47899999999999999999999999999998888887765666666666655  88


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhcccCCC-cchhhHHHHHHH-HHHHHHHHHHHHhHHH------HHHHHHHHHHHHH
Q psy15539        162 MFCAGRLLTGFGGGSFAVVVPMYTAEIAET-EIRGTLGTYFQL-QCTAGILFVYAVGSWA------SVYGLSIICALLP  232 (333)
Q Consensus       162 ~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~-~~rg~~~~~~~~-~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~  232 (333)
                      .+++.|++.|++.+...+...+++.|+.|. +.|+...+.... ...+|..+++.++..+      +|+..+.+.....
T Consensus        96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477          96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            899999999999999999999999999988 678888888777 5777778887666544      5777555544444

>KOG0254|consensus

Probab=98.82  E-value=4.3e-07  Score=85.02  Aligned_cols=161  Identities=11%  Similarity=0.013  Sum_probs=101.6

Q ss_pred             hhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhh---
Q psy15539         83 TILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS---  159 (333)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~---  159 (333)
                      ........+.+.+.+.   .|.+... .+...+..+...++..++.++.||+|||+.++.+.+.++++.++++....   
T Consensus       309 tG~~~~~~Y~~~if~~---~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~  384 (513)
T KOG0254|consen  309 TGINYVFYYSTTIFKS---AGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFAL  384 (513)
T ss_pred             hCCceEEeehHHHHHh---cCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence            3344455556667666   6666443 55566677777888888899999999999999999999999888775421   


Q ss_pred             ----------HHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHh-HHHHH---HHHH
Q psy15539        160 ----------VIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVG-SWASV---YGLS  225 (333)
Q Consensus       160 ----------~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~-~~~~~---~~~~  225 (333)
                                ...+...-+.......+..++.+.+.+|.+|.+.|+++.++......+...+..... ....+   ...|
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f  464 (513)
T KOG0254|consen  385 YYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTF  464 (513)
T ss_pred             cCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence                      112222222222333345566777889999999999999986555444443332222 22222   3344


Q ss_pred             HHHHHHHHH-HH-HHhhcccCChH
Q psy15539        226 IICALLPIF-FV-GLMLLMPESPQ  247 (333)
Q Consensus       226 ~~~~~~~~~-~~-~~~~~~~e~~~  247 (333)
                      .+.+..+.+ .. ..++++||+..
T Consensus       465 ~~f~~~~~~~~~~fv~~~~pETkg  488 (513)
T KOG0254|consen  465 GYFGGICLLSLIIFVFFFVPETKG  488 (513)
T ss_pred             HHHHHHHHHHHHHHheEEcccCCC
Confidence            444444443 44 46668899853

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.79  E-value=3e-07  Score=85.19  Aligned_cols=130  Identities=16%  Similarity=0.133  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccch-----hHHH--HHHHHHHHHHHHHHHH---------HhhHHHHHHHHHHHhh
Q psy15539        109 LSFIGSSMALGAVFGSPVVGNLVDTVGR-----KNTM--LLLAVPTLVGWGLIIW---------SQSVIMFCAGRLLTGF  172 (333)
Q Consensus       109 ~~~~~~~~~~~~~i~~~~~g~l~dr~Gr-----r~~l--~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~G~  172 (333)
                      .+++.++..+.-++.+++..++..+.+|     +...  .+|.++.+++.+..++         ..|++++++..++.|+
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            6777888888888887776544333333     3333  6788888888777664         3588999999999999


Q ss_pred             hhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHH
Q psy15539        173 GGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGL  238 (333)
Q Consensus       173 ~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  238 (333)
                      |.....|...+++.+..|++.||+++|++.....+|..+++.+....    +|...+...++.+++..+.
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVV  463 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998887765    5666666666665554333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.79  E-value=4.1e-11  Score=110.23  Aligned_cols=153  Identities=15%  Similarity=0.096  Sum_probs=96.6

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH--H--Hh-h----H
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLII--W--SQ-S----V  160 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~~-~----~  160 (333)
                      .+.+.+.+.   .+.+..  -.......+...++.++..++.||+|||+.++++.++.+++++.++  .  .. +    -
T Consensus       274 ~~~~~i~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (451)
T PF00083_consen  274 YYSPSIFEN---AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWS  348 (451)
T ss_pred             ccccccccc---cccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            334556555   666655  2223344455667777778999999999999999988888877664  1  11 1    1


Q ss_pred             HHHHHHHHHHhhhhh-hhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHH-H
Q psy15539        161 IMFCAGRLLTGFGGG-SFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPI-F  234 (333)
Q Consensus       161 ~~~~~~~~l~G~~~g-~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~-~  234 (333)
                      ...+++-.+..++.+ +..+..+.+..|.+|++.|+++.++......++..+++.+...+    +-...+.+.+++++ .
T Consensus       349 ~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~  428 (451)
T PF00083_consen  349 ILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIA  428 (451)
T ss_pred             cccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHH
Confidence            111222222222222 34566678889999999999999998877778877777665544    31233444444444 4


Q ss_pred             HHHHhhcccCChH
Q psy15539        235 FVGLMLLMPESPQ  247 (333)
Q Consensus       235 ~~~~~~~~~e~~~  247 (333)
                      .++.++++||+..
T Consensus       429 ~i~~~~~lpET~g  441 (451)
T PF00083_consen  429 IIFVYFFLPETKG  441 (451)
T ss_pred             HhheeEEEeeCCC
Confidence            4556678999853

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.76  E-value=2.6e-07  Score=83.46  Aligned_cols=117  Identities=14%  Similarity=0.040  Sum_probs=88.6

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH-HHHHHHHH--HhhHHHHHHHHHHHhhhhhhhh
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTL-VGWGLIIW--SQSVIMFCAGRLLTGFGGGSFA  178 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~l~G~~~g~~~  178 (333)
                      +|.+..+.+++.....++..++.++.+++.||+|++........+.. +.......  ..+.+.+++..++.|++.+...
T Consensus       238 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  317 (394)
T PRK11652        238 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLF  317 (394)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            78888889999888889999999999999999984433322222222 22111122  2355667777889999999999


Q ss_pred             hhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        179 VVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       179 ~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      +...++..|.+| +.+|.+.++.+....+|..+++.+++..
T Consensus       318 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~  357 (394)
T PRK11652        318 PLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAML  357 (394)
T ss_pred             HHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999989886 5789999999999999999999988877

>TIGR00788 fbt folate/biopterin transporter

Probab=98.74  E-value=1.4e-07  Score=87.08  Aligned_cols=119  Identities=7%  Similarity=-0.067  Sum_probs=102.1

Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHH
Q psy15539        101 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS----------QSVIMFCAGRLLT  170 (333)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~  170 (333)
                      ..|.++...|.+.....++.+++..+.+++.+|++.|+++.++.++.+++.+.....          ++.+.+...-++.
T Consensus       282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~  361 (468)
T TIGR00788       282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA  361 (468)
T ss_pred             cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence            389999999999999999999999999999999999999999999998877554311          2333445557788


Q ss_pred             hhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        171 GFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       171 G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      +++.+..+.....++.+..|++.+|+..++.+....+|..+++.+++.+
T Consensus       362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l  410 (468)
T TIGR00788       362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLL  410 (468)
T ss_pred             HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888999999999999999999999999999999999887766

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11462 putative transporter; Provisional

Probab=98.73  E-value=1.4e-06  Score=80.44  Aligned_cols=113  Identities=12%  Similarity=0.067  Sum_probs=73.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhhhhhhhhhhhhhh
Q psy15539        107 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ--SVIMFCAGRLLTGFGGGSFAVVVPMY  184 (333)
Q Consensus       107 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~  184 (333)
                      ...+.+.+.+.++.+++.+++++++||+|+|+.+..+.++.++..++..+.+  +...+++.-++.|++.+...+...++
T Consensus       263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m  342 (460)
T PRK11462        263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVM  342 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667788888999999999999999999987765554444344333322  23334455566787777777766777


Q ss_pred             hcccCC-------CcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        185 TAEIAE-------TEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       185 ~~e~~~-------~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      ++|..+       .+.-|...+......-+|..+++.+++++
T Consensus       343 ~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i  384 (460)
T PRK11462        343 MSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM  384 (460)
T ss_pred             HHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777765       22224444555566666666666655443

>KOG4686|consensus

Probab=98.72  E-value=1.7e-08  Score=83.64  Aligned_cols=152  Identities=16%  Similarity=0.119  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhc-cchhHHHHHH
Q psy15539         65 ITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLL  143 (333)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~  143 (333)
                      .++......+++..+...++.-..+..-.++..+   .+++.++..++-+++..-..+-++++|++.|| +|-|..-++-
T Consensus        40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d---~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~  116 (459)
T KOG4686|consen   40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLD---SNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIIL  116 (459)
T ss_pred             hhHHHHHHHHHHhcccceeecCCchhhhhhhhcc---cccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHH
Confidence            3455555555555555544444444444555555   77888888999999999999999999999995 6777666665


Q ss_pred             HHHHHHHHHHHH---HHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        144 AVPTLVGWGLII---WSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       144 ~~~~~~~~~~~~---~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      ++...++-++++   ....+|.+.++|++.|+|.-.....-+.|..-||..|+.+.++|+......+|+.+-..+.+++
T Consensus       117 ~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~l  195 (459)
T KOG4686|consen  117 CIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFL  195 (459)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHH
Confidence            555666666554   3578999999999999998888888899999999999999999999888888888755555544

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.71  E-value=5.4e-08  Score=86.91  Aligned_cols=115  Identities=15%  Similarity=0.115  Sum_probs=83.1

Q ss_pred             hhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH--h--hHHHHHHH
Q psy15539         91 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS--Q--SVIMFCAG  166 (333)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~--~~~~~~~~  166 (333)
                      ..|.+.++  .+|.++.+.+++.+...++.+++.++.|+++||+|||+.+..+..+...+..+..+.  .  +...+.+.
T Consensus       247 ~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (366)
T TIGR00886       247 IFAMFFKD--QFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVL  324 (366)
T ss_pred             HHHHHHHH--HcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHH
Confidence            35556544  278888999999999999999999999999999999988877776666655554432  2  45444444


Q ss_pred             HHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHH
Q psy15539        167 RLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAG  208 (333)
Q Consensus       167 ~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g  208 (333)
                      ..+.+++.|...+...+.+.+..| +.+|...|+.+....+|
T Consensus       325 ~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       325 FVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            455555555555666677778876 68999999887766554

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.70  E-value=1.3e-06  Score=75.24  Aligned_cols=166  Identities=13%  Similarity=0.034  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccc-hhHHHHHHH
Q psy15539         66 TQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG-RKNTMLLLA  144 (333)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G-rr~~l~~~~  144 (333)
                      ..|.......+.++..    +....-+|.+..+   .|+|..+.|++.+...+.....++....+++|.. +|+..+...
T Consensus       209 ~aW~vtLfmGlqS~~~----Y~~~~WLP~ili~---~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~  281 (395)
T COG2807         209 LAWQVTLFMGLQSLLY----YIVIGWLPAILID---RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLAL  281 (395)
T ss_pred             hhHHHHHHHHhhHHHH----HHHHHHHHHHHHH---cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            3444444444444333    2333448888888   9999999999999999999999999999999654 566666677


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCC-CcchhhHHHHHHHHHHHHHHHHHHHhHHH----
Q psy15539        145 VPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAE-TEIRGTLGTYFQLQCTAGILFVYAVGSWA----  219 (333)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~-~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----  219 (333)
                      +++.++.+.+.+.+....+.- -++.|+|.|+.++....++..... +++-+...++.|...-+=..++|.+.+++    
T Consensus       282 ~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~  360 (395)
T COG2807         282 LLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT  360 (395)
T ss_pred             HHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc
Confidence            777777777777654332222 499999999999999999987764 44445566665554444455688888777    


Q ss_pred             -HHHHHHHHHHHHHHHHHHHh
Q psy15539        220 -SVYGLSIICALLPIFFVGLM  239 (333)
Q Consensus       220 -~~~~~~~~~~~~~~~~~~~~  239 (333)
                       +|+...+..+...++..+.-
T Consensus       361 gsw~~~~~~l~~~~i~m~i~G  381 (395)
T COG2807         361 GSWSAPLVLLALATLLMLIFG  381 (395)
T ss_pred             CChHHHHHHHHHHHHHHHHHH
Confidence             78887777766666554443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.66  E-value=1.5e-06  Score=81.15  Aligned_cols=138  Identities=19%  Similarity=0.158  Sum_probs=95.2

Q ss_pred             HHHhhhhhhhccchhhhhhhhcCCcccccCc---hhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHH-HHHHHHHHHHH
Q psy15539         76 IGGFIMGTILGWTSPAGDRLIAGEYPFLVTE---SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM-LLLAVPTLVGW  151 (333)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~  151 (333)
                      +..+..+........+.|......  ++.+.   ...+++.....++..+++++.|.+..+++|-|.. +++.+++.+++
T Consensus       317 vi~fi~G~~~~s~~~l~p~~~~~v--f~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~  394 (599)
T PF06609_consen  317 VISFISGMNFFSVNILWPQQVVNV--FGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFC  394 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh--ccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHH
Confidence            333444444333334445443331  33332   3567888888999999999999999988875554 56766666655


Q ss_pred             HHHHHH--hhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHH
Q psy15539        152 GLIIWS--QSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAV  215 (333)
Q Consensus       152 ~~~~~~--~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~  215 (333)
                      -+++..  +|....+..-++.|++.|...........-..|++.-|.+.++..+...+|+.++..+
T Consensus       395 Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aI  460 (599)
T PF06609_consen  395 GAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAI  460 (599)
T ss_pred             HHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence            555443  3555566778899999998887777777778899999999999888888877776655

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.65  E-value=4.4e-06  Score=79.65  Aligned_cols=139  Identities=17%  Similarity=0.211  Sum_probs=109.1

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHhh
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVD-TVGRKNTMLLLAVPTLVGWGLIIWSQ--------SVIMFCAGRLLTGF  172 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~G~  172 (333)
                      +|.+.+.+..+...+....-+..+++|+++| ++||++.++++.++..++.++.++..        .....+++-.+.++
T Consensus        18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~   97 (654)
T TIGR00926        18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL   97 (654)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence            7888888888888887777888889999999 58999999999999999988877642        12335566777888


Q ss_pred             hhhhhhhhhhhhhcccCCCcc---hhhHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHHH
Q psy15539        173 GGGSFAVVVPMYTAEIAETEI---RGTLGTYFQLQCTAGILFVYAVGSWA-----------SVYGLSIICALLPIFFVGL  238 (333)
Q Consensus       173 ~~g~~~~~~~~~~~e~~~~~~---rg~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~  238 (333)
                      |.|++-+...+...|.+++++   |-....++..+..+|+++++.+..++           +|...|.+.+++.++.+++
T Consensus        98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv  177 (654)
T TIGR00926        98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV  177 (654)
T ss_pred             hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence            999999999999999987543   55677777788888888888877665           2777888777777766555


Q ss_pred             hh
Q psy15539        239 ML  240 (333)
Q Consensus       239 ~~  240 (333)
                      ++
T Consensus       178 f~  179 (654)
T TIGR00926       178 FM  179 (654)
T ss_pred             HH
Confidence            44

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.65  E-value=1.2e-06  Score=79.52  Aligned_cols=126  Identities=6%  Similarity=-0.175  Sum_probs=91.7

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLL  169 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  169 (333)
                      ..++.+..+. ..+.+....+...+.+..+..+|.++++++.||+++|+++.+..++.++.+++..+.++... ..+-++
T Consensus       253 s~l~~y~~~~-~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~  330 (410)
T TIGR00885       253 TFIIQYAVRL-IPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTL  330 (410)
T ss_pred             HHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHH
Confidence            3455555430 12334444455666677888999999999999999999998888888888888877666443 566777


Q ss_pred             HhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        170 TGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       170 ~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      .|++.+..+|...+...+..+++.+....++.. + .+|+.+.|.+.+++
T Consensus       331 ~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~-~-~~Gga~~p~l~G~~  378 (410)
T TIGR00885       331 CSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM-A-IIGGGIVPPLQGFI  378 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH-H-HhccchHHHHHHHH
Confidence            888888899999999999998765433333322 2 38888888887776

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.62  E-value=1.7e-06  Score=80.37  Aligned_cols=110  Identities=15%  Similarity=0.138  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccchhHH-------HHHHHHHHHHHHHHHH-----HH-----hhHHHHHHHHHHHh
Q psy15539        109 LSFIGSSMALGAVFGSPVVGNLVDTVGRKNT-------MLLLAVPTLVGWGLII-----WS-----QSVIMFCAGRLLTG  171 (333)
Q Consensus       109 ~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~-------l~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~l~G  171 (333)
                      ..++.+...+..++..++.+++.||+|+|+.       +.+|.++.+++.+..+     ..     .+.+.++...++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            4555666667777899999999999999974       7777777776654331     21     25677788899999


Q ss_pred             hhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHH
Q psy15539        172 FGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSW  218 (333)
Q Consensus       172 ~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~  218 (333)
                      +|.+...+....++.+..|++.+|.++++++....+|..++..++..
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~  437 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATF  437 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988877743

>TIGR01272 gluP glucose/galactose transporter

Probab=98.59  E-value=5e-07  Score=78.85  Aligned_cols=86  Identities=12%  Similarity=0.032  Sum_probs=72.1

Q ss_pred             HHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----------------
Q psy15539        156 WSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----------------  219 (333)
Q Consensus       156 ~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----------------  219 (333)
                      ...++..+++..++.|.|.+...+..++++++..+++++++.+++.+..+++|..++|.+++.+                
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            4568899999999999999999999999999999999999999999999999999999998732                


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHhhc
Q psy15539        220 ----SVYGLSIICALLPIFFVGLMLL  241 (333)
Q Consensus       220 ----~~~~~~~~~~~~~~~~~~~~~~  241 (333)
                          +|+++|++.+.+.++..+.+.+
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~  111 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAF  111 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                4788888666655444333333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.58  E-value=1.1e-05  Score=74.26  Aligned_cols=140  Identities=19%  Similarity=0.223  Sum_probs=99.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH-HHHHHHHHHHHHHH-h-hHHHHHHHHHHHhhhhhhhhhhhhhh
Q psy15539        108 DLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLL-AVPTLVGWGLIIWS-Q-SVIMFCAGRLLTGFGGGSFAVVVPMY  184 (333)
Q Consensus       108 ~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~-~~~~~~~~~~~~~~-~-~~~~~~~~~~l~G~~~g~~~~~~~~~  184 (333)
                      ..++..++..+..++..|+.|.++|+-|+||.++.. .++.+++++++.+. + +++...+..++.-++.+.......++
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346778888889999999999999999988776654 45555666666664 3 45555555666667888888889999


Q ss_pred             hcccCCCcch--------------------------hhHHHHHHHHHHHHHHHHHHHhHHH------------HHHHHHH
Q psy15539        185 TAEIAETEIR--------------------------GTLGTYFQLQCTAGILFVYAVGSWA------------SVYGLSI  226 (333)
Q Consensus       185 ~~e~~~~~~r--------------------------g~~~~~~~~~~~~g~~~~~~~~~~~------------~~~~~~~  226 (333)
                      +.|+.+++.+                          ++..+.-....-+|+++...+...+            +-|..+.
T Consensus       151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~  230 (477)
T PF11700_consen  151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL  230 (477)
T ss_pred             hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence            9999998888                          8888776555566666655554332            2466676


Q ss_pred             HHHHHHHH-HHHHhhcccCChH
Q psy15539        227 ICALLPIF-FVGLMLLMPESPQ  247 (333)
Q Consensus       227 ~~~~~~~~-~~~~~~~~~e~~~  247 (333)
                      +.++.-++ .+..++++|+.|+
T Consensus       231 ~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  231 IVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCC
Confidence            76666554 4555667787764

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.57  E-value=1.2e-05  Score=70.93  Aligned_cols=119  Identities=19%  Similarity=0.243  Sum_probs=103.1

Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHhhhhhh
Q psy15539        101 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVD-TVGRKNTMLLLAVPTLVGWGLIIWS---QSVIMFCAGRLLTGFGGGS  176 (333)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~g~  176 (333)
                      -+|.+..+...+++....|..++-...|++.. |.++++.-.+|+.+.+++..+..++   .+.+.+...-++.|++.|.
T Consensus       238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~  317 (403)
T PF03209_consen  238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGL  317 (403)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhH
Confidence            38999999999999999999999999998777 7888888888888887776665543   5788889999999999999


Q ss_pred             hhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        177 FAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       177 ~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      ......+.+.+...++.-|..+|.+...+.++..++..+++..
T Consensus       318 f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~  360 (403)
T PF03209_consen  318 FTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGAL  360 (403)
T ss_pred             HHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988888999999999999999999999888888888887655

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3762|consensus

Probab=98.56  E-value=2.2e-07  Score=83.61  Aligned_cols=158  Identities=14%  Similarity=0.118  Sum_probs=123.0

Q ss_pred             hhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhh
Q psy15539         80 IMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQS  159 (333)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~  159 (333)
                      +.|...+.+...+=-.+++   .+..+...|...+.-..|-++.-++.+++..|+|+-+++.+++.+.++=.+..++.+|
T Consensus       382 ~mG~g~~lv~tFLfWHled---~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n  458 (618)
T KOG3762|consen  382 VMGAGVGLVFTFLFWHLED---LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQN  458 (618)
T ss_pred             HHHHHHHHHHHHHHHHHhh---cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcC
Confidence            3333333333333334555   6666666777777788888889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHH-HHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHH
Q psy15539        160 VIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQ-LQCTAGILFVYAVGSWA----SVYGLSIICALLPIF  234 (333)
Q Consensus       160 ~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~-~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~  234 (333)
                      .|..+..-+++|+..+..+..+.+|++...||+.|.++.++.+ ...++|-.+|.++++.+    +-+..|.+.++.+++
T Consensus       459 ~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~  538 (618)
T KOG3762|consen  459 PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLV  538 (618)
T ss_pred             chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998854 44555555566665554    667777777777766


Q ss_pred             HHHHhh
Q psy15539        235 FVGLML  240 (333)
Q Consensus       235 ~~~~~~  240 (333)
                      .++...
T Consensus       539 ~l~~~~  544 (618)
T KOG3762|consen  539 TLALFI  544 (618)
T ss_pred             HHHHHH
Confidence            544444

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.56  E-value=3.5e-07  Score=62.09  Aligned_cols=80  Identities=15%  Similarity=0.089  Sum_probs=71.8

Q ss_pred             hhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhH
Q psy15539         81 MGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSV  160 (333)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~  160 (333)
                      .|.....+.+.+|.++++   .++|.++.+++.+..++||.+|++...++.++..+++.+..+.+..++.++.+++..+.
T Consensus         4 mGigRFayTplLP~M~~~---~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~   80 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQAD---GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSF   80 (85)
T ss_pred             hhhHHHHHHhHhHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            355566777889999999   99999999999999999999999999999999888999999999999999999998876


Q ss_pred             HHH
Q psy15539        161 IMF  163 (333)
Q Consensus       161 ~~~  163 (333)
                      +.+
T Consensus        81 ~~w   83 (85)
T PF06779_consen   81 WLW   83 (85)
T ss_pred             HHH
Confidence            544

Note that many members are hypothetical proteins.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.56  E-value=4.5e-06  Score=73.49  Aligned_cols=117  Identities=16%  Similarity=0.079  Sum_probs=92.7

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhccc-----hhHHHHH-HHHHHHHHHHHHHHH-----h--------h---
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG-----RKNTMLL-LAVPTLVGWGLIIWS-----Q--------S---  159 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~-~~~~~~~~~~~~~~~-----~--------~---  159 (333)
                      ++++..-.+.+.++..+... ..+.+|+.+|+.+     ||..+++ |.++...+..+..++     .        .   
T Consensus        10 L~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g   88 (403)
T PF03209_consen   10 LGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLG   88 (403)
T ss_pred             hccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHH
Confidence            78888888888888777664 6889999999999     7766554 666666665555442     1        1   


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        160 VIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       160 ~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      .....+...+.|+|.+...+...++++|..|+++|+++.++......+|.+++.++.+.+
T Consensus        89 ~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~l  148 (403)
T PF03209_consen   89 LALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRL  148 (403)
T ss_pred             HHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            234556688999999999999999999999999999999998888888988888887765

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3764|consensus

Probab=98.55  E-value=1.7e-07  Score=81.42  Aligned_cols=154  Identities=14%  Similarity=0.126  Sum_probs=117.8

Q ss_pred             hhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccc--hhHHHHHHHHHHHHHHHHHHHHh
Q psy15539         81 MGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG--RKNTMLLLAVPTLVGWGLIIWSQ  158 (333)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~  158 (333)
                      ........-+.++.+..+  .+..+.-+.|+..--..+.+.++..+.|.++||++  |-.....+.+..++++....+++
T Consensus       282 ~n~~lafLePtlslwm~e--~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~  359 (464)
T KOG3764|consen  282 SNSSLAFLEPTLSLWMLE--TMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFAT  359 (464)
T ss_pred             ccchHHHhCcccHHHHHH--hccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhh
Confidence            334455556666665554  25533337777777788899999999999999999  64455556777777777788899


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCc------chhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHH
Q psy15539        159 SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETE------IRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIIC  228 (333)
Q Consensus       159 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~  228 (333)
                      ++..+++-++..|++.+...........+..+.+      ..|...++...++++|..+||.+++++    |..|...+.
T Consensus       360 ~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~ii  439 (464)
T KOG3764|consen  360 SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTII  439 (464)
T ss_pred             hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHH
Confidence            9999999999999998888877777777666543      456788899999999999999999988    777777777


Q ss_pred             HHHHHHHH
Q psy15539        229 ALLPIFFV  236 (333)
Q Consensus       229 ~~~~~~~~  236 (333)
                      ++..++..
T Consensus       440 g~~n~iya  447 (464)
T KOG3764|consen  440 GILNLIYA  447 (464)
T ss_pred             HHHHHHHH
Confidence            77776643

>KOG2816|consensus

Probab=98.49  E-value=5.1e-06  Score=75.87  Aligned_cols=127  Identities=26%  Similarity=0.341  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh--hhhhhhhhhhhhhcccCCCc
Q psy15539        115 SMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGF--GGGSFAVVVPMYTAEIAETE  192 (333)
Q Consensus       115 ~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~--~~g~~~~~~~~~~~e~~~~~  192 (333)
                      ...+..++.++..|.++||+|||..+.+..+...+..+...+.. +|.++    +.|+  +.+.......+++++....+
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~  144 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE  144 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence            34677889999999999999999999998888888877776655 33322    3333  23456777888999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHH-HHHhhcccCCh
Q psy15539        193 IRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFF-VGLMLLMPESP  246 (333)
Q Consensus       193 ~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~e~~  246 (333)
                      .|....++.+..+..+..++|.+++.+    +.-..+.+..+..++. +...+++||+-
T Consensus       145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl  203 (463)
T KOG2816|consen  145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESL  203 (463)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccccc
Confidence            999999999999999999999998877    4445666666665554 34455788874

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.48  E-value=7.5e-06  Score=75.13  Aligned_cols=136  Identities=9%  Similarity=-0.096  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHHHHHHHHHHhh---------------------HHHHHHHHH
Q psy15539        111 FIGSSMALGAVFGSPVVGNLVDTVGR-KNTMLLLAVPTLVGWGLIIWSQS---------------------VIMFCAGRL  168 (333)
Q Consensus       111 ~~~~~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~  168 (333)
                      +....+.+...+.+++..++.+|+|+ |++..++.++.+++.+...+..+                     .+..++...
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  388 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA  388 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence            33444555556777888899999995 66668888888887777765443                     366778889


Q ss_pred             HHhhhhhhhhhhhhhhhcccCCCc--chhhHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHH-Hh
Q psy15539        169 LTGFGGGSFAVVVPMYTAEIAETE--IRGTLGTYFQLQCTAGILFVYAVGSWA------SVYGLSIICALLPIFFVG-LM  239 (333)
Q Consensus       169 l~G~~~g~~~~~~~~~~~e~~~~~--~rg~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~  239 (333)
                      +.|+..+..+.+.++++++..+++  ..|..+|+.|....+.+++..+..+.+      +-.+.+.+.++.++++.+ ..
T Consensus       389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~  468 (477)
T TIGR01301       389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL  468 (477)
T ss_pred             HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999854  449999999999999999988766554      234566667777766544 45


Q ss_pred             hcccCCh
Q psy15539        240 LLMPESP  246 (333)
Q Consensus       240 ~~~~e~~  246 (333)
                      +.+|.++
T Consensus       469 ~~~~~~~  475 (477)
T TIGR01301       469 ILLPRPR  475 (477)
T ss_pred             HhCCCCC
Confidence            5667654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.47  E-value=1e-05  Score=62.44  Aligned_cols=114  Identities=12%  Similarity=0.107  Sum_probs=92.1

Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhh
Q psy15539        104 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPM  183 (333)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~  183 (333)
                      +++..--.-.++.+....+++++.+.+.+++|.|+.+++|.+...+..... +-++.+.++.+-.+.|++.+..++....
T Consensus        34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~  112 (156)
T PF05978_consen   34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGT  112 (156)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence            333333344566777788899999999999999999999999988665554 4567788999999999999999999999


Q ss_pred             hhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHH
Q psy15539        184 YTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSW  218 (333)
Q Consensus       184 ~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~  218 (333)
                      ++.+...++.|++..+++-.....+.++|.++...
T Consensus       113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~  147 (156)
T PF05978_consen  113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF  147 (156)
T ss_pred             HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988777777777777655443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.41  E-value=2.3e-06  Score=78.13  Aligned_cols=147  Identities=22%  Similarity=0.192  Sum_probs=107.2

Q ss_pred             hhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHHHHHHH----hhHHH
Q psy15539         92 GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-----GRKNTMLLLAVPTLVGWGLIIWS----QSVIM  162 (333)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-----Grr~~l~~~~~~~~~~~~~~~~~----~~~~~  162 (333)
                      .|.+.++   +|.++++...+.+...+.. ...++.|.++|-+     .||+-++++.++.+++.+.++..    .+...
T Consensus        13 ~~~l~~~---l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~   88 (433)
T PF03092_consen   13 YPFLKDD---LGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI   88 (433)
T ss_pred             HHHHHHH---cCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence            4556666   9999999888877777665 4567789999976     35666677777776666655553    24556


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhcccC--CCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHH
Q psy15539        163 FCAGRLLTGFGGGSFAVVVPMYTAEIA--ETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFV  236 (333)
Q Consensus       163 ~~~~~~l~G~~~g~~~~~~~~~~~e~~--~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  236 (333)
                      ..++-++..+|........-+.+.|..  .++.||...+.......+|.+++..+++.+    +++..|.+.+++..+..
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence            666778888899999999999999986  233478888888888888999888887766    66777777776666654


Q ss_pred             HHhhcc
Q psy15539        237 GLMLLM  242 (333)
Q Consensus       237 ~~~~~~  242 (333)
                      +..+++
T Consensus       169 ~~~~~~  174 (433)
T PF03092_consen  169 IVALFL  174 (433)
T ss_pred             HHHHHh
Confidence            444433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.40  E-value=2.7e-05  Score=70.89  Aligned_cols=126  Identities=15%  Similarity=0.189  Sum_probs=80.2

Q ss_pred             hhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH-----HhhHHHHHH
Q psy15539         91 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW-----SQSVIMFCA  165 (333)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~  165 (333)
                      ..|.+.++  .+|.+..+.++.......+..++..+.+.+.++.++++.+.....+..++.++...     .+++...++
T Consensus       240 ~~P~~l~~--~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~  317 (413)
T PRK15403        240 VSPVILID--AGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVL  317 (413)
T ss_pred             hChHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence            45666665  26899999999888888888888888888765544444433333333333222221     223334566


Q ss_pred             HHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        166 GRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       166 ~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      ..++.++|.+...+......-. -....+|++.++.+.....+...++..++++
T Consensus       318 ~~~l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~  370 (413)
T PRK15403        318 GTSLYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWL  370 (413)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888877776643321 1222478888888877777777777777666

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.34  E-value=1.2e-05  Score=70.32  Aligned_cols=131  Identities=9%  Similarity=0.018  Sum_probs=102.8

Q ss_pred             hhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy15539         84 ILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMF  163 (333)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~  163 (333)
                      ........++.+..+  ..|.+..+.....+.+..+.++|.++..++..|+-..|.+.+..++..+.++..+++++... 
T Consensus       251 ~Eva~gsfl~~y~~~--~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~-  327 (422)
T COG0738         251 AEVAIGSFLVSYLEE--LLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVA-  327 (422)
T ss_pred             HHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHH-
Confidence            334444556667666  27788889999999999999999999999999999999999999888888888888888544 


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        164 CAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       164 ~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      +.+-++.|+..+..+|...+...+..| +. ....|..-....+|+.+.|.+.+++
T Consensus       328 ~~~l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i  381 (422)
T COG0738         328 LYALFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVI  381 (422)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHH
Confidence            445567888899999999999999888 33 3334444455567888888888877

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.32  E-value=2.5e-06  Score=57.43  Aligned_cols=64  Identities=19%  Similarity=0.250  Sum_probs=54.4

Q ss_pred             hhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q psy15539         81 MGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPT  147 (333)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~  147 (333)
                      .....+...|.+|.+.++   .|++..+.|.+.++..+...++.+++|.++||+|+++.++....++
T Consensus        12 ~f~~~g~~~Pfl~~~~~~---~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   12 YFAALGCLYPFLPLYLKQ---LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHhhhhHhhhh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            333455666778888888   9999999999999999999999999999999999999887765543

>KOG0255|consensus

Probab=98.31  E-value=3.6e-05  Score=72.39  Aligned_cols=137  Identities=20%  Similarity=0.144  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHhhhhhhhhhhhhhhhcc
Q psy15539        111 FIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVI---MFCAGRLLTGFGGGSFAVVVPMYTAE  187 (333)
Q Consensus       111 ~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~G~~~g~~~~~~~~~~~e  187 (333)
                      ...+........+....+.+.|++|||.....+.++..+++++.++.....   ...+...+..++.+..+.....+.+|
T Consensus       354 ~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  433 (521)
T KOG0255|consen  354 LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAE  433 (521)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444445666666778999999999999999999999999988865433   35555566666666677777899999


Q ss_pred             cCCCcchhhHHHHHHHHHHHHHHHHHHHhHHHHH--H-HHHHHHHHHHHH-HHHHhhcccCChH
Q psy15539        188 IAETEIRGTLGTYFQLQCTAGILFVYAVGSWASV--Y-GLSIICALLPIF-FVGLMLLMPESPQ  247 (333)
Q Consensus       188 ~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~--~-~~~~~~~~~~~~-~~~~~~~~~e~~~  247 (333)
                      .+|+..|..+.+.......+|.+++|.+......  . ..+.+.+..+.+ ..+..+++||+..
T Consensus       434 l~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~  497 (521)
T KOG0255|consen  434 LIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKG  497 (521)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCC
Confidence            9999999999999999999999999988765521  1 122223444444 4445578999854

>KOG2533|consensus

Probab=98.19  E-value=2.6e-05  Score=71.84  Aligned_cols=140  Identities=10%  Similarity=-0.013  Sum_probs=91.7

Q ss_pred             HHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhc----cchhHHHHHHHHHHHH
Q psy15539         74 ATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDT----VGRKNTMLLLAVPTLV  149 (333)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~Grr~~l~~~~~~~~~  149 (333)
                      ..+..+......+.+...+|.+.++  ..|.+..+.+.+.+.+.++.+++.+++|+++||    ..+|..+.....+..+
T Consensus       278 ~~l~~~~~~lv~~~~~~~lpl~l~~--~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~  355 (495)
T KOG2533|consen  278 FSLCYFFLKLVNYGFSYWLPLYLKS--NGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAI  355 (495)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHc--CCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            3344444444444555667878776  467899999999999999999999999999999    6777776666655554


Q ss_pred             HH-HHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcch-hhHHHHHHHHHHHHHHHHHHH
Q psy15539        150 GW-GLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIR-GTLGTYFQLQCTAGILFVYAV  215 (333)
Q Consensus       150 ~~-~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~r-g~~~~~~~~~~~~g~~~~~~~  215 (333)
                      .. +......+......+.+..+.+.+...+......++......| -...+....+.+.+.++++.+
T Consensus       356 ~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~  423 (495)
T KOG2533|consen  356 IGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQL  423 (495)
T ss_pred             HHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhh
Confidence            44 4444443344444444444455666667777777777655544 344445566666666665555

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.19  E-value=0.00041  Score=63.58  Aligned_cols=113  Identities=10%  Similarity=0.131  Sum_probs=81.2

Q ss_pred             hhHHHHHHHHHHHHHHH-HHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH--h-------------------------
Q psy15539        107 SDLSFIGSSMALGAVFG-SPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS--Q-------------------------  158 (333)
Q Consensus       107 ~~~~~~~~~~~~~~~i~-~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~-------------------------  158 (333)
                      +...++-+...+...+. .++.+++++|++|++++-+......+..+++++.  +                         
T Consensus        43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~  122 (472)
T TIGR00769        43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF  122 (472)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence            56788877776666555 8889999999999999887666666555554442  0                         


Q ss_pred             ----hHHHHHHHHHHHhhhhhhhhh-hhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        159 ----SVIMFCAGRLLTGFGGGSFAV-VVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       159 ----~~~~~~~~~~l~G~~~g~~~~-~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                          +.|...+......+-.....+ ..+.+++|.+..++-.+..++...+.++|.++++.+..++
T Consensus       123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~  188 (472)
T TIGR00769       123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF  188 (472)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                122222333333333333444 7788999999999999999999999999999999887665

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG0637|consensus

Probab=98.15  E-value=3.5e-06  Score=74.67  Aligned_cols=129  Identities=21%  Similarity=0.297  Sum_probs=98.7

Q ss_pred             hhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhh----ccchhHHHHH-HHHHHHHHHHHHHHHhh------
Q psy15539         91 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVD----TVGRKNTMLL-LAVPTLVGWGLIIWSQS------  159 (333)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----r~Grr~~l~~-~~~~~~~~~~~~~~~~~------  159 (333)
                      +.+.+..+   .|++....+.+--..-+...+.+++.|..+|    ||||||.++. +.+..+++.++..++.+      
T Consensus        54 y~tPyl~~---lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lg  130 (498)
T KOG0637|consen   54 YLTPYLQS---LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLG  130 (498)
T ss_pred             cccHHHHH---cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhc
Confidence            35556666   8888887777766667777889999999999    6899887765 56666777777776543      


Q ss_pred             -----------HHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhh-HHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy15539        160 -----------VIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGT-LGTYFQLQCTAGILFVYAVGSWASVY  222 (333)
Q Consensus       160 -----------~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~-~~~~~~~~~~~g~~~~~~~~~~~~~~  222 (333)
                                 ...++++.-+.-++....+...-+++.|...++++.+ +.+.+....++|+.+|..++++.+|+
T Consensus       131 d~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~  205 (498)
T KOG0637|consen  131 DNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLY  205 (498)
T ss_pred             CCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCce
Confidence                       2345555556666777788889999999987777767 99999999999999999888777543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.03  E-value=0.00042  Score=64.07  Aligned_cols=111  Identities=14%  Similarity=0.124  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccch--hH-----HHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHhh
Q psy15539        109 LSFIGSSMALGAVFGSPVVGNLVDTVGR--KN-----TMLLLAVPTLVGWGLIIWS---------QSVIMFCAGRLLTGF  172 (333)
Q Consensus       109 ~~~~~~~~~~~~~i~~~~~g~l~dr~Gr--r~-----~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~G~  172 (333)
                      .+|..++..+.-++.+|+.+++=.|.+|  |.     =+.+|+++.+++.+.+.++         .+.+++++.-++.++
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~  389 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF  389 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            5677777777778888887777666633  21     1667888888887666442         256778888999999


Q ss_pred             hhhhhhhhhhhhhcccCCCcchhhHHHHHHH-HHHHHHHHHHHHhHHH
Q psy15539        173 GGGSFAVVVPMYTAEIAETEIRGTLGTYFQL-QCTAGILFVYAVGSWA  219 (333)
Q Consensus       173 ~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~-~~~~g~~~~~~~~~~~  219 (333)
                      |+-...|+..+.+++..|++.||+.+|.+.. ...+|..++..++...
T Consensus       390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999866 3467777766665433

>KOG2615|consensus

Probab=98.03  E-value=0.00011  Score=64.00  Aligned_cols=119  Identities=13%  Similarity=0.104  Sum_probs=103.4

Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccc--hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhh
Q psy15539        101 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG--RKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFA  178 (333)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~  178 (333)
                      .+|.++.+.|-+.+...++..+.+....+..||..  -+-.+..+..++.-..++...+.....+.++-.+..+..+...
T Consensus       291 rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~v  370 (451)
T KOG2615|consen  291 RFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVV  370 (451)
T ss_pred             ccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhh
Confidence            48999999999999999999998888888888887  6677777777777777777778888888888888888888888


Q ss_pred             hhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        179 VVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       179 ~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      +....++....|.++||...|+.....+++-.+||.+++.+
T Consensus       371 t~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i  411 (451)
T KOG2615|consen  371 TCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVI  411 (451)
T ss_pred             HHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhee
Confidence            88888999999999999999999999999999999998655

>PTZ00207 hypothetical protein; Provisional

Probab=98.00  E-value=0.00019  Score=67.63  Aligned_cols=126  Identities=10%  Similarity=0.037  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhc---------cchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhh
Q psy15539        112 IGSSMALGAVFGSPVVGNLVDT---------VGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVP  182 (333)
Q Consensus       112 ~~~~~~~~~~i~~~~~g~l~dr---------~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~  182 (333)
                      +.+++.+++++|.+..|++...         +.|--.+.+..+ +.++.+++++......+++..++.|++.|..+++..
T Consensus       396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~  474 (591)
T PTZ00207        396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA  474 (591)
T ss_pred             ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence            6788888888888888887722         222222333334 666666666654446899999999999999999999


Q ss_pred             hhhcccCCCcchhhHHHHHHHHHHHHHHHH-HHHhHHH-----------------HHHHHHHHHHHHHHHHHHHh
Q psy15539        183 MYTAEIAETEIRGTLGTYFQLQCTAGILFV-YAVGSWA-----------------SVYGLSIICALLPIFFVGLM  239 (333)
Q Consensus       183 ~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~-~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~  239 (333)
                      ..++|+|. +.-|+-..+......+|+.+- ..+.+.+                 =.+..|++.+.+++++.+..
T Consensus       475 ~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s  548 (591)
T PTZ00207        475 LVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITS  548 (591)
T ss_pred             HHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHH
Confidence            99999999 888888888888888887775 2333322                 14567888877777655443

>KOG2816|consensus

Probab=97.89  E-value=0.00053  Score=62.87  Aligned_cols=118  Identities=12%  Similarity=0.084  Sum_probs=103.8

Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHHHHH-HhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhh
Q psy15539        101 PFLVTESDLSFIGSSMALGAVFGSPVVG-NLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAV  179 (333)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~  179 (333)
                      .++++..+.+.+.+...+...+++.+.. .+...+|-|+++.+|++.-.+...+.+++++.|+++....+.++. +...+
T Consensus       271 ~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~~~~p  349 (463)
T KOG2816|consen  271 KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-GIVFP  349 (463)
T ss_pred             ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-cchhH
Confidence            4899999999998888888888888776 788899999999999999999999999999999988888777765 45778


Q ss_pred             hhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        180 VVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       180 ~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      ...+.++-+..++++|+..++.....++..+++|.+-+.+
T Consensus       350 a~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  350 AIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             HHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence            8889999999999999999999999999998888886554

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.86  E-value=0.00072  Score=60.32  Aligned_cols=110  Identities=15%  Similarity=0.082  Sum_probs=79.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH--HHHHH---HHHHHhhHHHHHHHHHHHhhhhhhhhhh
Q psy15539        106 ESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPT--LVGWG---LIIWSQSVIMFCAGRLLTGFGGGSFAVV  180 (333)
Q Consensus       106 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~l~G~~~g~~~~~  180 (333)
                      ..+..+....+.+|-+++.--...+  |+  |++.+.+.+-.  .+..+   +.-+.++.+..++.-+..|+..|..+.-
T Consensus       280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVN  355 (402)
T PF02487_consen  280 RDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVN  355 (402)
T ss_pred             HHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHH
Confidence            4577888888888877765432221  33  33333322222  12212   2223578888888999999999999999


Q ss_pred             hhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        181 VPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       181 ~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      ....+.|-.++++|..++|....+-++|.+++..++-++
T Consensus       356 tF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  356 TFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998887665

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3574|consensus

Probab=97.78  E-value=0.0013  Score=57.51  Aligned_cols=139  Identities=17%  Similarity=0.098  Sum_probs=90.8

Q ss_pred             HHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhh-----ccchhHHHHH-HH
Q psy15539         71 ALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVD-----TVGRKNTMLL-LA  144 (333)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d-----r~Grr~~l~~-~~  144 (333)
                      +..+.+.+...|...+... .+|.+.+.   -|.|-++.+....++  .-..--+++.++.|     |+||||.-++ +.
T Consensus        33 illLl~LYllQGiP~GL~~-~iP~lL~a---k~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q  106 (510)
T KOG3574|consen   33 ILLLLFLYLLQGIPLGLIG-AIPLLLQA---KGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQ  106 (510)
T ss_pred             HHHHHHHHHHcCCchhHhh-hhHHHhcC---CCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhhccccceeeehH
Confidence            4445555667788777777 78988887   777777766544332  22344567778888     9999987544 44


Q ss_pred             HHHHHHHHHHHHH-----------hhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHH
Q psy15539        145 VPTLVGWGLIIWS-----------QSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVY  213 (333)
Q Consensus       145 ~~~~~~~~~~~~~-----------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~  213 (333)
                      .+.+..+.+.+..           ++...+....++.-+..+......-.+.-.+..+++-|.+......+...|..++.
T Consensus       107 ~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~  186 (510)
T KOG3574|consen  107 YLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGN  186 (510)
T ss_pred             HHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhc
Confidence            4444444444431           23444444556666666666666666777777788888888877777777777766


Q ss_pred             HH
Q psy15539        214 AV  215 (333)
Q Consensus       214 ~~  215 (333)
                      .+
T Consensus       187 ~i  188 (510)
T KOG3574|consen  187 VV  188 (510)
T ss_pred             ce
Confidence            55

>KOG3098|consensus

Probab=97.75  E-value=0.0019  Score=58.65  Aligned_cols=102  Identities=11%  Similarity=-0.007  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCc
Q psy15539        113 GSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETE  192 (333)
Q Consensus       113 ~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~  192 (333)
                      .++.+..+.+.+++.+.+.|+.|.|..++++........+...+ .|-+.+++...+.|+|.+..+..-..|++|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            77888899999999999999999999999999988887766555 45677889999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHH
Q psy15539        193 IRGTLGTYFQLQCTAGILFVYAV  215 (333)
Q Consensus       193 ~rg~~~~~~~~~~~~g~~~~~~~  215 (333)
                      .+.+..++.-.....+.++|..+
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~  157 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGII  157 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHh
Confidence            99999988666666666666554

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.64  E-value=0.0014  Score=59.42  Aligned_cols=129  Identities=16%  Similarity=0.049  Sum_probs=98.6

Q ss_pred             chhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH---H---h---
Q psy15539         88 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW---S---Q---  158 (333)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~---~---  158 (333)
                      .+..+..|...   .|+++...|.+-+...+..+.+.++..++.+|+|..+.=+++.....++..++..   .   +   
T Consensus       277 f~~lmt~yl~~---~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~  353 (432)
T PF06963_consen  277 FGGLMTAYLKS---QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSS  353 (432)
T ss_pred             CcHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchh
Confidence            45567778777   7999999999999999999999999999999999988877776665544444332   1   1   


Q ss_pred             -hHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        159 -SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       159 -~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                       +...++.+-.+.-+|.=+......-++.|..|+++||...|.-.....+..++...+.-..
T Consensus       354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             3444555555666676677777888899999999999999998887777777666554433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.61  E-value=0.0034  Score=55.75  Aligned_cols=105  Identities=10%  Similarity=0.127  Sum_probs=76.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH-HHHHHHHHHHHHHHHhh---HHHHHHHHHHHhhhhhhhhhhhh
Q psy15539        107 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL-LAVPTLVGWGLIIWSQS---VIMFCAGRLLTGFGGGSFAVVVP  182 (333)
Q Consensus       107 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~l~G~~~g~~~~~~~  182 (333)
                      +..+...++..+..++.+|+.|.++|+.|+||..+. ...+..++.+++.+.++   ++..+++..+..++..+......
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            345777788888889999999999999998776554 55556666667776654   44455557778888888888899


Q ss_pred             hhhcccCCCcchhhHHHHHHHHHHHHHHH
Q psy15539        183 MYTAEIAETEIRGTLGTYFQLQCTAGILF  211 (333)
Q Consensus       183 ~~~~e~~~~~~rg~~~~~~~~~~~~g~~~  211 (333)
                      +++.+..++++-++..++.....-+|+++
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i  166 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVI  166 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchH
Confidence            99999999888777766633333334443

>KOG4332|consensus

Probab=97.42  E-value=0.00069  Score=56.34  Aligned_cols=84  Identities=20%  Similarity=0.231  Sum_probs=64.3

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHhhhhhhhh
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW---SQSVIMFCAGRLLTGFGGGSFA  178 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~G~~~g~~~  178 (333)
                      +|....+++.+........++.+.+.|-++||-|||+.-    +.+++..+++..   ++.+..++++|.+.|+..+..+
T Consensus        67 YgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKrac----vtycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsLLF  142 (454)
T KOG4332|consen   67 YGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC----VTYCITYILSCITKHSPQYKVLMVGRVLGGIATSLLF  142 (454)
T ss_pred             cCccCCccceeeecccchHHHHHHHHHHHHhhhccccce----eeehHHHHHHHHhhcCCceEEEeehhhhhhHHHHHHH
Confidence            777777888877777777788888999999999999953    334444444443   4678889999999999998888


Q ss_pred             hhhhhh-hcccC
Q psy15539        179 VVVPMY-TAEIA  189 (333)
Q Consensus       179 ~~~~~~-~~e~~  189 (333)
                      ...-++ ++|.-
T Consensus       143 SaFEsWliaEHn  154 (454)
T KOG4332|consen  143 SAFESWLIAEHN  154 (454)
T ss_pred             HHHHHHHHHHhh
Confidence            777666 46654

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.39  E-value=0.0012  Score=59.00  Aligned_cols=128  Identities=15%  Similarity=0.052  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccC
Q psy15539        110 SFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIA  189 (333)
Q Consensus       110 ~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~  189 (333)
                      +.+.-+-.+-..+..+++.++.+|+..+.=+.+..++.+++.++.+++++.+.-+++-.+.+++.|........+.+ .+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence            33444444566677778888999988666666777788888888899999988888899999988877777666644 55


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHhhcc
Q psy15539        190 ETEIRGTLGTYFQLQCTAGILFVYAVGSWA-----SVYGLSIICALLPIFFVGLMLLM  242 (333)
Q Consensus       190 ~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  242 (333)
                      ++    ...+.+..|.+.++++|+..-..+     ..|..+++...+.++.++.++++
T Consensus       141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~  194 (402)
T PF02487_consen  141 GK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFL  194 (402)
T ss_pred             Cc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            53    356667777777777776654333     34566666666666555555543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.35  E-value=0.012  Score=53.58  Aligned_cols=128  Identities=16%  Similarity=0.142  Sum_probs=98.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccchh-------HHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHH
Q psy15539        108 DLSFIGSSMALGAVFGSPVVGNLVDTVGRK-------NTMLLLAVPTLVGWGLIIWS----------QSVIMFCAGRLLT  170 (333)
Q Consensus       108 ~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~  170 (333)
                      ...+..+...+.-++.+++..++-.+.+++       .=+-++.++++.+.+++...          .+.++++...+++
T Consensus       325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~  404 (498)
T COG3104         325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ  404 (498)
T ss_pred             CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence            456778888888888888888888885554       12455666666666655443          2678899999999


Q ss_pred             hhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHH-------H---HHHHHHHHHHHHHHHH
Q psy15539        171 GFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSW-------A---SVYGLSIICALLPIFF  235 (333)
Q Consensus       171 G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~  235 (333)
                      ++|.=+..|+..+++....|+...+..++.+..+...|+.++..++..       .   .....|+.++...++.
T Consensus       405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~  479 (498)
T COG3104         405 SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVI  479 (498)
T ss_pred             HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988877762       2   3445566666555543

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.35  E-value=0.0019  Score=57.96  Aligned_cols=105  Identities=20%  Similarity=0.221  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCc---chhhHHHHHHHHH
Q psy15539        138 NTMLLLAVPTLVGWGLIIWSQ---------SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETE---IRGTLGTYFQLQC  205 (333)
Q Consensus       138 ~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~---~rg~~~~~~~~~~  205 (333)
                      |.++++.+++.+|.+++.++.         +...++++-++.++|.|+.-+...++++|.++++   +|.....++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567888999999988855542         2357888888999999999999999999999765   4566777889999


Q ss_pred             HHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhhcc
Q psy15539        206 TAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLMLLM  242 (333)
Q Consensus       206 ~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  242 (333)
                      .+|..++..+..++    +|.+.|.+.++..+++++.++.-
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999998887    79999999888887776666543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG3098|consensus

Probab=97.35  E-value=0.027  Score=51.40  Aligned_cols=109  Identities=22%  Similarity=0.278  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh---ccchhHHHHHHHHHHHHHHHHHHHH------------------hhHHHHHHHHH
Q psy15539        110 SFIGSSMALGAVFGSPVVGNLVD---TVGRKNTMLLLAVPTLVGWGLIIWS------------------QSVIMFCAGRL  168 (333)
Q Consensus       110 ~~~~~~~~~~~~i~~~~~g~l~d---r~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~  168 (333)
                      +...-...+|..+++.+.+.+.+   ++||++.+.++.++..++.++....                  ++.....+..+
T Consensus       282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~  361 (461)
T KOG3098|consen  282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF  361 (461)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence            44444556666777777777775   6888999999888888877776542                  23567778889


Q ss_pred             HHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        169 LTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       169 l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      +.|++-+......+.++.... ++.|..+.+++-.-.+++..++.......
T Consensus       362 l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~  411 (461)
T KOG3098|consen  362 LLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL  411 (461)
T ss_pred             HHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            999999998898999999988 67788888887777777776655554443

>PRK03612 spermidine synthase; Provisional

Probab=97.28  E-value=0.029  Score=52.63  Aligned_cols=117  Identities=12%  Similarity=-0.033  Sum_probs=65.3

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH-HHHHH-HHHHHHHHHH----h-hHHHHHHHHHHHhhhh
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL-LAVPT-LVGWGLIIWS----Q-SVIMFCAGRLLTGFGG  174 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~-~~~~~~~~~~----~-~~~~~~~~~~l~G~~~  174 (333)
                      +|.+....+.+.+++.+|..+|+.+++++.++.-++...+- +..+. .++..+....    . ....++...++.++..
T Consensus        45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~  124 (521)
T PRK03612         45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI  124 (521)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777888999999999999999999888744333322111 11111 1111111111    1 1122334455677778


Q ss_pred             hhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        175 GSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       175 g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      |+..|....+..+... +.-|...|-......+|+++|.++.+++
T Consensus       125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~v  168 (521)
T PRK03612        125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFL  168 (521)
T ss_pred             HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence            8887776666654322 1224455555566666666666665544

>KOG3810|consensus

Probab=97.27  E-value=0.0011  Score=57.05  Aligned_cols=201  Identities=16%  Similarity=0.121  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchh
Q psy15539        116 MALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRG  195 (333)
Q Consensus       116 ~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg  195 (333)
                      ..-.+.+.-++.=.+.|....|+++++-.+...+...+..+.++.+.+-+.-++.|...+ .....++++-+..+++.+-
T Consensus        51 wTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yq  129 (433)
T KOG3810|consen   51 WTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYK  129 (433)
T ss_pred             hhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHH
Confidence            344555666666678999999999998888888888888889999999999999998876 3456788888889999998


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCC
Q psy15539        196 TLGTYFQLQCTAGILFVYAVGSWA------SVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSE  269 (333)
Q Consensus       196 ~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  269 (333)
                      ++.+..-...-.|-..+..++..+      ++...-++......+..+..+++|..++...-+.+.+  +....+....+
T Consensus       130 rvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~--~~~v~~~e~~~  207 (433)
T KOG3810|consen  130 RVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLED--KISVGDLEEMN  207 (433)
T ss_pred             HHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccc--cceeccchhcC
Confidence            888887766666666666665554      3444444544444555666677777664332221111  11111111000


Q ss_pred             cchHHHHHH-HHHHHHhhccCccchHhhhcChhhHHHHHHHHHHHHHHhhcchhhhhhchh
Q psy15539        270 YDIDSEITD-MQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTV  329 (333)
Q Consensus       270 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~  329 (333)
                      .  +.+..+ ++..   -..-...+.+..++|     -++-+-+|.....||++-+.+|.-
T Consensus       208 ~--~~~~~~~l~~~---~~~l~~~l~~~y~np-----~ll~WSlWwAl~scg~~QV~nY~Q  258 (433)
T KOG3810|consen  208 P--QASYMSYLRGA---FVLLWRDLQECYSNP-----RLLKWSLWWALASCGYYQVTNYTQ  258 (433)
T ss_pred             c--cchhhHHHHHH---HHHHHHHHHHHhcCc-----hhhhhHHHHHHhhchhHHHHHHHH
Confidence            0  000000 0000   000112234455555     366677888888899988888854

>KOG1237|consensus

Probab=97.21  E-value=0.01  Score=56.00  Aligned_cols=148  Identities=14%  Similarity=0.108  Sum_probs=107.4

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHHHHHHhh---------
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTLVGWGLIIWSQS---------  159 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~---------  159 (333)
                      ..+..+..+   ++.+...+.-..+.+.-......++.++++|- +||-+.+.++.++..++.++..+...         
T Consensus        59 nlv~ylt~~---~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~  135 (571)
T KOG1237|consen   59 NLVTYLTLE---LHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMC  135 (571)
T ss_pred             HHHHHHHHH---hccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Confidence            334444444   77777777777888888888888999999995 68888888888888888665544211         


Q ss_pred             ----------------HHHHHHHHHHHhhhhhhhhhhhhhhhcccCC---Ccc-hh--hHHHHHHHHHHHHHHHHHHHhH
Q psy15539        160 ----------------VIMFCAGRLLTGFGGGSFAVVVPMYTAEIAE---TEI-RG--TLGTYFQLQCTAGILFVYAVGS  217 (333)
Q Consensus       160 ----------------~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~---~~~-rg--~~~~~~~~~~~~g~~~~~~~~~  217 (333)
                                      ...++....+..+|.|+.-+...++-+|-++   +++ +.  ..+.++.....+|.+++..+..
T Consensus       136 ~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~v  215 (571)
T KOG1237|consen  136 KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLV  215 (571)
T ss_pred             cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHH
Confidence                            1355566677778999999999999999998   322 22  4667778888888888877766


Q ss_pred             HH----HHHHHHHHHHHHHHHHHHHhh
Q psy15539        218 WA----SVYGLSIICALLPIFFVGLML  240 (333)
Q Consensus       218 ~~----~~~~~~~~~~~~~~~~~~~~~  240 (333)
                      +.    +|.+.|.+..+..++++++++
T Consensus       216 yiq~~~~w~lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  216 YIQDNVGWKLGFGIPTVLNALAILIFL  242 (571)
T ss_pred             hhhhcccceeeccHHHHHHHHHHHHHH
Confidence            66    888888877777666555444

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.11  E-value=0.0034  Score=57.55  Aligned_cols=144  Identities=10%  Similarity=0.161  Sum_probs=100.5

Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHhh
Q psy15539        103 LVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW----------SQSVIMFCAGRLLTGF  172 (333)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~G~  172 (333)
                      +.++...+.+..+..++.++|..+...+.-+..-|+++..+.++.++..+.-..          .++.+..+.--++..+
T Consensus       251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~  330 (433)
T PF03092_consen  251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV  330 (433)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence            378888898888888999999999988888888899988888777666554221          1122222233455555


Q ss_pred             hhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH------------HHHHHHHHHHHHHHHHHHHhh
Q psy15539        173 GGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA------------SVYGLSIICALLPIFFVGLML  240 (333)
Q Consensus       173 ~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~  240 (333)
                      ..+..+-.....++|++|+..-|+..++......+|..++..++..+            +-.+..+++.++.++.+....
T Consensus       331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~  410 (433)
T PF03092_consen  331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLF  410 (433)
T ss_pred             HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence            55666666777899999999999999988888888888777777665            123445555555555555555


Q ss_pred             cccCCh
Q psy15539        241 LMPESP  246 (333)
Q Consensus       241 ~~~e~~  246 (333)
                      ++|+..
T Consensus       411 lLp~~~  416 (433)
T PF03092_consen  411 LLPPQK  416 (433)
T ss_pred             HcCCCc
Confidence            677643

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.09  E-value=0.15  Score=47.36  Aligned_cols=115  Identities=16%  Similarity=0.205  Sum_probs=72.3

Q ss_pred             CchhHHHHHHHHHH-HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH--h-----------------------
Q psy15539        105 TESDLSFIGSSMAL-GAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS--Q-----------------------  158 (333)
Q Consensus       105 ~~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~-----------------------  158 (333)
                      .++....+-....+ +.++...+..+++++++|.+++-+..........++++.  +                       
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~  135 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK  135 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence            34455555443333 556667788999999999998776555555444444331  0                       


Q ss_pred             ------hHHHHHHHHHHHhhhhhhhhh-hhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        159 ------SVIMFCAGRLLTGFGGGSFAV-VVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       159 ------~~~~~~~~~~l~G~~~g~~~~-~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                            +.|.+.+..+..-+-.....+ ..+.+.+|.++.++-.+..+++..+..+|.+++..+..+.
T Consensus       136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~  203 (491)
T PF03219_consen  136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF  203 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  012222222222221122222 4688999999999999999999999999999887776555

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.05  E-value=0.0045  Score=56.22  Aligned_cols=142  Identities=14%  Similarity=0.124  Sum_probs=73.6

Q ss_pred             HHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHH--HHHHHHHHHHHH-HHhhhccchhHHHHH-HHHHHH
Q psy15539         73 TATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSS--MALGAVFGSPVV-GNLVDTVGRKNTMLL-LAVPTL  148 (333)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~-g~l~dr~Grr~~l~~-~~~~~~  148 (333)
                      ++.+.+++.|...+.....+|.++++. .-+.+-++.+..+-+  .+=--.+.+|+. .....|+||||.-++ .=.+.+
T Consensus         4 lL~~LY~lQGiP~GL~~gsiPflL~~~-~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g   82 (544)
T PF13000_consen    4 LLVLLYFLQGIPLGLAFGSIPFLLQSM-AKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSG   82 (544)
T ss_pred             HHHHHHHHcCcccccccccchhhhccc-cCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHH
Confidence            345566777877777666677776640 124454555543222  111112233322 445559999987554 223333


Q ss_pred             HHHHHHHHHh------------------------hHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHH
Q psy15539        149 VGWGLIIWSQ------------------------SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQ  204 (333)
Q Consensus       149 ~~~~~~~~~~------------------------~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~  204 (333)
                      +..+..+...                        +...+....+++=+..+-....+-.+.-.+..++.++.+......|
T Consensus        83 ~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG  162 (544)
T PF13000_consen   83 ILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVG  162 (544)
T ss_pred             HHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhH
Confidence            3333322211                        1112333333333334444444445555666778888888877777


Q ss_pred             HHHHHHHHHHH
Q psy15539        205 CTAGILFVYAV  215 (333)
Q Consensus       205 ~~~g~~~~~~~  215 (333)
                      ..+|..++..+
T Consensus       163 ~~~Gyfls~tv  173 (544)
T PF13000_consen  163 QTAGYFLSFTV  173 (544)
T ss_pred             hhhhHHHHHHH
Confidence            77777766555

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3762|consensus

Probab=96.83  E-value=0.00063  Score=61.99  Aligned_cols=81  Identities=15%  Similarity=0.215  Sum_probs=64.1

Q ss_pred             HHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH-HHHHHHHH
Q psy15539         74 ATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLA-VPTLVGWG  152 (333)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~-~~~~~~~~  152 (333)
                      +=+..+..+...+.+.+.++.+.++   +|+++.+.|.++..--+..+++.|++|+++||+.+||.++++. +..+.+.+
T Consensus        16 ~k~f~~~~~~~~g~l~pll~vy~kQ---LGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~f   92 (618)
T KOG3762|consen   16 AKLFYLFFGARFGSLFPLLAVYFKQ---LGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATF   92 (618)
T ss_pred             eeeeeeeeeecccccchHHHHHHHH---cCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            3344445555667777888889888   9999999999999999999999999999999999887777655 45555666


Q ss_pred             HHHHH
Q psy15539        153 LIIWS  157 (333)
Q Consensus       153 ~~~~~  157 (333)
                      ++.+.
T Consensus        93 ll~fv   97 (618)
T KOG3762|consen   93 LLVFV   97 (618)
T ss_pred             heeec
Confidence            66554

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=96.83  E-value=0.38  Score=43.99  Aligned_cols=113  Identities=19%  Similarity=0.215  Sum_probs=77.9

Q ss_pred             CchhHHHHHHHHHH-HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH---------hh---------------
Q psy15539        105 TESDLSFIGSSMAL-GAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWS---------QS---------------  159 (333)
Q Consensus       105 ~~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~---------------  159 (333)
                      .++...++-+..-+ +.++..++..++.+++.|.+++-+.........+++++.         ++               
T Consensus        59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l  138 (509)
T COG3202          59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL  138 (509)
T ss_pred             cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence            34556666666655 677888899999999999999877666666665555542         01               


Q ss_pred             -----------HHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        160 -----------VIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       160 -----------~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                                 ...++++.=+.|--  ...-..+.+..|.+..++-.+..++++.+..++..++..+..+.
T Consensus       139 ~~~ili~~~Ws~s~~Yi~aELWgsl--V~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~  207 (509)
T COG3202         139 KWFILIVGEWSYSLFYIMAELWGSL--VLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL  207 (509)
T ss_pred             eeeeEeecchHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                       11222222222211  11225677889999999999999999999999999988887776

>KOG2563|consensus

Probab=96.82  E-value=0.008  Score=53.88  Aligned_cols=103  Identities=19%  Similarity=0.221  Sum_probs=69.6

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhH-HHHHHHHHHHHHHHHHH-HH---hhHHHHHHHHHHHhhhhhh
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKN-TMLLLAVPTLVGWGLII-WS---QSVIMFCAGRLLTGFGGGS  176 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~l~G~~~g~  176 (333)
                      .|.+....|++.....++.++++.++|.+.||...-+ .+++......++..... +.   ...+.++..-.+.|++..+
T Consensus       296 sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~  375 (480)
T KOG2563|consen  296 SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTG  375 (480)
T ss_pred             ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcC
Confidence            5666688999999999999999999999999976533 34444444444422211 11   1334455556677888888


Q ss_pred             hhhhhhhhhcccCCCcchhhHHHHHHHH
Q psy15539        177 FAVVVPMYTAEIAETEIRGTLGTYFQLQ  204 (333)
Q Consensus       177 ~~~~~~~~~~e~~~~~~rg~~~~~~~~~  204 (333)
                      .+|+..-+..|..-|..-+...|+.++.
T Consensus       376 ~~Pig~ElgvE~TyPv~E~tSsGll~~~  403 (480)
T KOG2563|consen  376 YLPIGFELGVETTYPVAEGTSSGLLNLS  403 (480)
T ss_pred             CCCcceeeeeeeccccCCcccceeEEee
Confidence            8999999999985444445666664443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.31  E-value=0.22  Score=45.65  Aligned_cols=59  Identities=15%  Similarity=0.192  Sum_probs=49.4

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHh
Q psy15539        158 QSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVG  216 (333)
Q Consensus       158 ~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~  216 (333)
                      ++-+..++.-++.|+..|-..+....+..+..++++|..+..+......+|..+|..++
T Consensus       370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~  428 (437)
T TIGR00939       370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS  428 (437)
T ss_pred             cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667778899999999999999999999999999999888888888888877776654

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.18  E-value=0.15  Score=46.79  Aligned_cols=96  Identities=8%  Similarity=-0.070  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH-HHHHHH-------HhhHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q psy15539        115 SMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVG-WGLIIW-------SQSVIMFCAGRLLTGFGGGSFAVVVPMYTA  186 (333)
Q Consensus       115 ~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~  186 (333)
                      ...+...+..+....+..|+..|.=+..+.++..+. .+...+       ...++..++.-++.|++.+........+.+
T Consensus        53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~  132 (437)
T TIGR00939        53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFGLAG  132 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchhhcc
Confidence            344444555555555666666533333333322211 111111       124566667778889998888888777766


Q ss_pred             ccCCCcchhhHHHHHHHHHHHHHHHHHHH
Q psy15539        187 EIAETEIRGTLGTYFQLQCTAGILFVYAV  215 (333)
Q Consensus       187 e~~~~~~rg~~~~~~~~~~~~g~~~~~~~  215 (333)
                       .+|++    .+..+..|.+++++++.++
T Consensus       133 -~fp~~----~~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       133 -VFPST----YSSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             -cCCHH----HHHHHHhcchhHHHHHHHH
Confidence             45544    3444445555555554443

>KOG1330|consensus

Probab=95.98  E-value=0.033  Score=50.26  Aligned_cols=118  Identities=14%  Similarity=-0.032  Sum_probs=64.8

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhccch-------hHHHHHHHHHHHHHHH---HH-HH-HhhHHHHHHHHHH
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR-------KNTMLLLAVPTLVGWG---LI-IW-SQSVIMFCAGRLL  169 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Gr-------r~~l~~~~~~~~~~~~---~~-~~-~~~~~~~~~~~~l  169 (333)
                      .|.+..+..++..++..+..+|.+++|.++||+-|       .+.=-+...+.+..++   .+ .. ..+...+...-++
T Consensus       278 ~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~  357 (493)
T KOG1330|consen  278 IGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFL  357 (493)
T ss_pred             hCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            34555666777788888899999999999998433       2221122222211111   11 11 1222222233334


Q ss_pred             Hhhh-hhhhhhhhhhhhcccCCCcchhhHHHHHH-HHHHHHHHHHHHHhHHH
Q psy15539        170 TGFG-GGSFAVVVPMYTAEIAETEIRGTLGTYFQ-LQCTAGILFVYAVGSWA  219 (333)
Q Consensus       170 ~G~~-~g~~~~~~~~~~~e~~~~~~rg~~~~~~~-~~~~~g~~~~~~~~~~~  219 (333)
                      .|.. .-...+...-...|..|++.|..+.++.. ....+|..-+|.+-+.+
T Consensus       358 ~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGil  409 (493)
T KOG1330|consen  358 VGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGIL  409 (493)
T ss_pred             HHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhH
Confidence            4433 22334445556789999999999999844 44445555555344433

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.81  E-value=0.42  Score=43.12  Aligned_cols=97  Identities=9%  Similarity=-0.031  Sum_probs=70.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhh
Q psy15539        105 TESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL--LAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVP  182 (333)
Q Consensus       105 ~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~  182 (333)
                      ...-.|.+-++..+...++.+..|++..++.+-.-+.+  ..++.+...+++.+.+|.+..+++.++.+.......++..
T Consensus       283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~  362 (412)
T PF01770_consen  283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIAS  362 (412)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456888888888899999999999777777554444  3455556666777888999999998888877777777666


Q ss_pred             hhhcccCCCcchhhHHHHH
Q psy15539        183 MYTAEIAETEIRGTLGTYF  201 (333)
Q Consensus       183 ~~~~e~~~~~~rg~~~~~~  201 (333)
                      .-++.....+.-|...|+.
T Consensus       363 ~qIA~~l~~e~yaLVFGiN  381 (412)
T PF01770_consen  363 FQIAKNLSEERYALVFGIN  381 (412)
T ss_pred             HHHHHhccccceeeeeeeH
Confidence            6666666555556655553

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.47  E-value=2  Score=39.31  Aligned_cols=38  Identities=24%  Similarity=0.260  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q psy15539        113 GSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVG  150 (333)
Q Consensus       113 ~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~  150 (333)
                      .-.-.+..++.++..|.+.||..|.+++..+.++.-++
T Consensus        44 gl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~s   81 (432)
T PF06963_consen   44 GLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLS   81 (432)
T ss_pred             HHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHH
Confidence            33445566788888899999999999887776665444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.44  E-value=0.0039  Score=58.57  Aligned_cols=74  Identities=15%  Similarity=0.208  Sum_probs=0.0

Q ss_pred             HHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHH-HHHHHHHHHHHhhhccch--hHHHHHHHHH
Q psy15539         71 ALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMAL-GAVFGSPVVGNLVDTVGR--KNTMLLLAVP  146 (333)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~Gr--r~~l~~~~~~  146 (333)
                      .+...++..........+...+|.|.+.  +++.++++++++..+..+ +.++|.+++|++..|+.-  |..+.+..+.
T Consensus       307 f~~~~la~~~~~~~~~G~~tF~pKylE~--QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~  383 (539)
T PF03137_consen  307 FMCLILAGVFESFIVSGFATFLPKYLES--QFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVV  383 (539)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHH
Confidence            3334444444444455556668999887  699999999888877655 677899999999998753  4444333333

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG1479|consensus

Probab=95.24  E-value=0.3  Score=43.69  Aligned_cols=83  Identities=10%  Similarity=0.019  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH---------HHHHHHHHHH
Q psy15539        159 SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA---------SVYGLSIICA  229 (333)
Q Consensus       159 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~---------~~~~~~~~~~  229 (333)
                      .+...++.-.+.+++.|..+...+...++ +|+++-...    ..|.++++.+...+.-..         +-...|.+..
T Consensus       116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqav----m~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~  190 (406)
T KOG1479|consen  116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAV----MSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITST  190 (406)
T ss_pred             hHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHH----HhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHH
Confidence            45566666778888888777776666555 454443222    233344443333322111         2223444444


Q ss_pred             HHHHHHHHHhhcccCCh
Q psy15539        230 LLPIFFVGLMLLMPESP  246 (333)
Q Consensus       230 ~~~~~~~~~~~~~~e~~  246 (333)
                      ++.++.++++..+|..|
T Consensus       191 ~~~llC~i~y~~l~~lp  207 (406)
T KOG1479|consen  191 VILLLCFVLYLVLPKLP  207 (406)
T ss_pred             HHHHHHHHHHHHhhcch
Confidence            44444555555566655

>TIGR00805 oat sodium-independent organic anion transporter

Probab=95.23  E-value=0.046  Score=52.74  Aligned_cols=65  Identities=11%  Similarity=0.139  Sum_probs=48.8

Q ss_pred             cchhhhhhhhcCCcccccCchhHHHHHHHHHH-HHHHHHHHHHHhhhccc--hhHHHHHHHHHHHHHHHH
Q psy15539         87 WTSPAGDRLIAGEYPFLVTESDLSFIGSSMAL-GAVFGSPVVGNLVDTVG--RKNTMLLLAVPTLVGWGL  153 (333)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~  153 (333)
                      .+...+|.+.++  .+|.++.+++++.+...+ +.+++.++.|+++||++  .|+.+.+++++..++.++
T Consensus       348 ~~~~~lP~yl~~--~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       348 GYITFLPKYLEN--QYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHHHH--HcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            344457777765  489999999999888776 67899999999999998  456666666666655443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2325|consensus

Probab=94.21  E-value=0.033  Score=51.08  Aligned_cols=66  Identities=12%  Similarity=0.043  Sum_probs=49.7

Q ss_pred             HHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHH
Q psy15539        167 RLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLP  232 (333)
Q Consensus       167 ~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~  232 (333)
                      -++.|.+.-.......+.-+|...++..+.+.+.++.+..++..++|++....    +.++.+.+.+...
T Consensus       395 i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~  464 (488)
T KOG2325|consen  395 IVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLL  464 (488)
T ss_pred             hheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHH
Confidence            45666666666666778889999999999999999999999999998887655    5555544444333

>KOG3097|consensus

Probab=92.72  E-value=1  Score=39.19  Aligned_cols=73  Identities=18%  Similarity=0.185  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccC
Q psy15539        116 MALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIA  189 (333)
Q Consensus       116 ~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~  189 (333)
                      ..+..+..+++.+.+..++|.|..++++...+....... +-+.+..++....+.|++.+..+..--+|+++.-
T Consensus        67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N-l~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAAN-LEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-cchhHHhhccHHHhhccccccccccCcceecHHH
Confidence            344555667777799999999999888777665443221 2356778888899999999988888888877654

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=92.35  E-value=0.04  Score=48.06  Aligned_cols=105  Identities=17%  Similarity=0.117  Sum_probs=3.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcc-chhHHHHHHH--HHHHHHHHHHH----------HHhhHHHHHHHHHHHhhhhhhhh
Q psy15539        112 IGSSMALGAVFGSPVVGNLVDTV-GRKNTMLLLA--VPTLVGWGLII----------WSQSVIMFCAGRLLTGFGGGSFA  178 (333)
Q Consensus       112 ~~~~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~--~~~~~~~~~~~----------~~~~~~~~~~~~~l~G~~~g~~~  178 (333)
                      +...++++-.+|..+.++.--+- .+|++.+.+.  ++.....++|-          +.++-+..++.-++.|+..|-..
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~  266 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS  266 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence            45667888888888776642211 2333333211  12211122221          12355677778899999999999


Q ss_pred             hhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHh
Q psy15539        179 VVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVG  216 (333)
Q Consensus       179 ~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~  216 (333)
                      +....+..+..++++|..+..+......+|..+|..++
T Consensus       267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls  304 (309)
T PF01733_consen  267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS  304 (309)
T ss_dssp             HHHH----------------------------------
T ss_pred             hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888877777777777666554

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG1479|consensus

Probab=92.10  E-value=3.5  Score=37.13  Aligned_cols=125  Identities=10%  Similarity=0.042  Sum_probs=77.9

Q ss_pred             hhhhhhcCCccccc-CchhHHHHHHH-HHHHHHHHHHHHHHhhhccchhHHHHHHHHH-HHHHHHHH-------HHHhhH
Q psy15539         91 AGDRLIAGEYPFLV-TESDLSFIGSS-MALGAVFGSPVVGNLVDTVGRKNTMLLLAVP-TLVGWGLI-------IWSQSV  160 (333)
Q Consensus        91 ~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~~~-------~~~~~~  160 (333)
                      ..|.+..+...-+. ++--...+... +++.-.+|.+...++-+.= ||+..+...+= ..+-.+.+       .+-.+-
T Consensus       265 iFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~  343 (406)
T KOG1479|consen  265 IFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESD  343 (406)
T ss_pred             ecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCc
Confidence            35666655322222 22233444555 8888888877776666653 34333322221 11112221       123466


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHh
Q psy15539        161 IMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVG  216 (333)
Q Consensus       161 ~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~  216 (333)
                      +.+++.-.+.|+..|-.......+..+..|++++-.+..+.......|...|..++
T Consensus       344 ~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  344 GWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             hHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            78888999999999999889999999999999888777777777666666665443

>KOG3880|consensus

Probab=91.04  E-value=0.86  Score=39.27  Aligned_cols=108  Identities=13%  Similarity=0.086  Sum_probs=73.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhccchhH-H--HHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhh
Q psy15539        107 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKN-T--MLL---LAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVV  180 (333)
Q Consensus       107 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~-~--l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~  180 (333)
                      +|.-|....|.+|-++..--     -++=+-+ .  +.+   .-++..+.-.+..+.++++..++..+.-|+-.|..+.-
T Consensus       288 sqYRwyqvlYQlGVFiSRSS-----~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVN  362 (409)
T KOG3880|consen  288 SQYRWYQVLYQLGVFISRSS-----INLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVN  362 (409)
T ss_pred             hcchhhheeeeeeEEEEecc-----ceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHH
Confidence            45788888888876543321     1111212 1  111   11222233334456788888888899999988888887


Q ss_pred             hhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        181 VPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       181 ~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      ..--+.+-.+++.|-.+++....+-++|..++..++-.+
T Consensus       363 Tf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  363 TFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            777777878899999999999999999988887776443

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=88.94  E-value=8.4  Score=32.48  Aligned_cols=102  Identities=19%  Similarity=0.160  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhc-cchhHHHH----HHHHHHHHHHHHHHH-H----hhHHHHHHHHHHHhhhhhhhhh
Q psy15539        110 SFIGSSMALGAVFGSPVVGNLVDT-VGRKNTML----LLAVPTLVGWGLIIW-S----QSVIMFCAGRLLTGFGGGSFAV  179 (333)
Q Consensus       110 ~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~----~~~~~~~~~~~~~~~-~----~~~~~~~~~~~l~G~~~g~~~~  179 (333)
                      .....++..|.++|.+..|.+... +-||+.+.    .+.++++++.++... .    .+...+++..++.|++.=+.++
T Consensus       144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~  223 (267)
T PF07672_consen  144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG  223 (267)
T ss_pred             HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence            333445556666666666776664 33444433    233444444433211 1    1456678888888887666666


Q ss_pred             hhhhhhcccCCCcchhhHHHHHHHHHHHHHHHH
Q psy15539        180 VVPMYTAEIAETEIRGTLGTYFQLQCTAGILFV  212 (333)
Q Consensus       180 ~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~  212 (333)
                      +....-.|. +...+-+..-.++..+++|.++-
T Consensus       224 ViL~lPhEy-K~~~pk~ig~~Fg~iWGfGY~~y  255 (267)
T PF07672_consen  224 VILNLPHEY-KGYNPKKIGIQFGLIWGFGYIFY  255 (267)
T ss_pred             HHhcChhhh-cCCCcceehhHHHHHHHHHHHHH
Confidence            655444443 22222223333556666666543

>TIGR00806 rfc RFC reduced folate carrier

Probab=88.32  E-value=5.2  Score=37.13  Aligned_cols=97  Identities=8%  Similarity=-0.096  Sum_probs=72.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhh
Q psy15539        108 DLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM--LLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYT  185 (333)
Q Consensus       108 ~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~  185 (333)
                      --|..-++..+...++++..|++-.++.+---+  .+..++.+...+++...+|++..+++.++.+.......++...-+
T Consensus       299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~i  378 (511)
T TIGR00806       299 YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQI  378 (511)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666777777888999999997777553333  334455555566777888999999999999999888888888888


Q ss_pred             cccCCCcchhhHHHHHHHH
Q psy15539        186 AEIAETEIRGTLGTYFQLQ  204 (333)
Q Consensus       186 ~e~~~~~~rg~~~~~~~~~  204 (333)
                      +.....+.-|...|+....
T Consensus       379 A~~L~~~~~aLvFGiNtfv  397 (511)
T TIGR00806       379 ASSLSKELCALVFGINTFV  397 (511)
T ss_pred             HHHhcccceEEEEecHHHH
Confidence            8887777777777775443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=87.94  E-value=3.3  Score=30.27  Aligned_cols=44  Identities=30%  Similarity=0.597  Sum_probs=30.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q psy15539        107 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVG  150 (333)
Q Consensus       107 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~  150 (333)
                      ...+.......++..++..+.+.+.|..|.+..+.+..++..++
T Consensus        87 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (141)
T TIGR00880        87 VALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA  130 (141)
T ss_pred             HHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence            34566677778888888888888888888777665554444433

>KOG3626|consensus

Probab=85.93  E-value=1.7  Score=42.27  Aligned_cols=77  Identities=10%  Similarity=0.143  Sum_probs=50.4

Q ss_pred             HHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHH-HHHHHHHHHHHhhhccc--hhHHHHHHHHHHH
Q psy15539         72 LTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMAL-GAVFGSPVVGNLVDTVG--RKNTMLLLAVPTL  148 (333)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~  148 (333)
                      +...++..+.......+...+|.|++.  ++|.+.+.+..+++...+ +.++|.+++|++..|+-  .|....+.++...
T Consensus       395 ~~~~l~~~~~~~~~~G~~tFlPKyLE~--Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~  472 (735)
T KOG3626|consen  395 MLVVLASVIESLAITGYITFLPKYLET--QFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSV  472 (735)
T ss_pred             HHHHHHHHHHHHHHhhHHHhhHHHHHH--HcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHH
Confidence            333444444444455555668999987  699999999988866655 45678888999999865  3444444444443


Q ss_pred             HH
Q psy15539        149 VG  150 (333)
Q Consensus       149 ~~  150 (333)
                      +.
T Consensus       473 l~  474 (735)
T KOG3626|consen  473 LS  474 (735)
T ss_pred             HH
Confidence            33

>KOG3810|consensus

Probab=85.88  E-value=6.7  Score=34.68  Aligned_cols=94  Identities=12%  Similarity=-0.015  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcc
Q psy15539        110 SFIGSSMALGAVFGSPVVGNLVDTVGRKNT--MLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAE  187 (333)
Q Consensus       110 ~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e  187 (333)
                      |..-++..+..+++.+..|++--.+.|..-  +.++.+..+...+++...++++..+++..+.+.......++...-+++
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~  353 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR  353 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence            555667777888999999999888877633  444555555666667777888888888888877777777777777777


Q ss_pred             cCCCcchhhHHHHHHH
Q psy15539        188 IAETEIRGTLGTYFQL  203 (333)
Q Consensus       188 ~~~~~~rg~~~~~~~~  203 (333)
                      -...+.-|...|+...
T Consensus       354 nL~~e~~gLvFGiNTF  369 (433)
T KOG3810|consen  354 NLSSELFGLVFGINTF  369 (433)
T ss_pred             hhhhhhheeeeehHHH
Confidence            7777766777766443

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=85.20  E-value=1.3  Score=37.23  Aligned_cols=51  Identities=16%  Similarity=0.086  Sum_probs=30.6

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHH--hH-----HH--HHHHHHHHHHHHHHHHHHHhhcc
Q psy15539        192 EIRGTLGTYFQLQCTAGILFVYAV--GS-----WA--SVYGLSIICALLPIFFVGLMLLM  242 (333)
Q Consensus       192 ~~rg~~~~~~~~~~~~g~~~~~~~--~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~  242 (333)
                      ++|+..+.+...++.+|.++....  -.     .+  +|++.+.+.+++.++.++.+..+
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455565555566666666654322  11     11  89998888887776655555443

>KOG4332|consensus

Probab=83.94  E-value=9.7  Score=32.49  Aligned_cols=96  Identities=20%  Similarity=0.222  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccchh--HHHHHHHHHHHHHHHHHHHH----h---hHHHHHHHHHHHhhhhhhhhh
Q psy15539        109 LSFIGSSMALGAVFGSPVVGNLVDTVGRK--NTMLLLAVPTLVGWGLIIWS----Q---SVIMFCAGRLLTGFGGGSFAV  179 (333)
Q Consensus       109 ~~~~~~~~~~~~~i~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~l~G~~~g~~~~  179 (333)
                      -|.+.+.++++.++|+-+...+..|-..|  ..+.+..++.++...+....    +   +...-+++.++.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            57888999999999999988887765544  33444444443333322221    1   233345666777778889999


Q ss_pred             hhhhhhcccCCCcchhhHHHHHHHH
Q psy15539        180 VVPMYTAEIAETEIRGTLGTYFQLQ  204 (333)
Q Consensus       180 ~~~~~~~e~~~~~~rg~~~~~~~~~  204 (333)
                      ...-+=++..|.+.|+..+.++-.-
T Consensus       364 SimkmRsqyIPEearstimNfFRvP  388 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVP  388 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheech
Confidence            9998889999999999988875543

>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]

Probab=82.56  E-value=31  Score=29.78  Aligned_cols=38  Identities=16%  Similarity=0.094  Sum_probs=24.3

Q ss_pred             CcchhhHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15539        191 TEIRGTLGTY-FQLQCTAGILFVYAVGSWASVYGLSIIC  228 (333)
Q Consensus       191 ~~~rg~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~  228 (333)
                      .+.||...-. .-+..++|.+++.++..+.+|.+.=-+.
T Consensus       153 lN~r~a~LHvl~D~Lgsv~vIia~i~i~~~~w~~~Dpi~  191 (296)
T COG1230         153 LNMRGAYLHVLGDALGSVGVIIAAIVIRFTGWSWLDPIL  191 (296)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchHH
Confidence            3456665554 4567777777777777777887744443

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=82.49  E-value=35  Score=30.35  Aligned_cols=86  Identities=13%  Similarity=0.025  Sum_probs=56.3

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHH----HHHHHHHHHHHHH-HH----HhhHHHHHHHHHHHhh
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML----LLAVPTLVGWGLI-IW----SQSVIMFCAGRLLTGF  172 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~----~~~~~~~~~~~~~-~~----~~~~~~~~~~~~l~G~  172 (333)
                      .|-..-+.+.+.+.+.....+|+...-++.|---.-+.+.    .|.+...-..++. .|    .++.+.++++-++.|.
T Consensus        38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~  117 (508)
T COG4262          38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGV  117 (508)
T ss_pred             cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            4555568899999999999999999888877533322222    2222211111111 22    2466788888999999


Q ss_pred             hhhhhhhhhhhhhcc
Q psy15539        173 GGGSFAVVVPMYTAE  187 (333)
Q Consensus       173 ~~g~~~~~~~~~~~e  187 (333)
                      -.|...|..+.++..
T Consensus       118 LVG~EiPL~mrml~~  132 (508)
T COG4262         118 LVGAEIPLLMRMLQR  132 (508)
T ss_pred             HHhcchHHHHHHHHH
Confidence            999998888877655

>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised

Probab=82.22  E-value=8.9  Score=29.37  Aligned_cols=51  Identities=12%  Similarity=0.086  Sum_probs=33.4

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHH
Q psy15539        158 QSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILF  211 (333)
Q Consensus       158 ~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~  211 (333)
                      +++..++....+.|+|.-   .+.|-+++-.+++++-|..+|+-.+-..++-+.
T Consensus        95 P~~~~~~~S~~~Fg~gll---GisYGilSaSWD~~r~GSllG~~e~~~N~~r~~  145 (153)
T PF11947_consen   95 PPWAVLLVSLVFFGLGLL---GISYGILSASWDPEREGSLLGWEEFKRNWGRMW  145 (153)
T ss_pred             CchHHHHHHHHHHHHHHH---hhhhhhcccccCCCCCCCcccHHHHHHhHHHHH
Confidence            345555555555555432   345556777788888899999988777776554

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.96  E-value=2.8  Score=29.65  Aligned_cols=28  Identities=21%  Similarity=0.276  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHhhhcc-chhHHHHH
Q psy15539        115 SMALGAVFGSPVVGNLVDTV-GRKNTMLL  142 (333)
Q Consensus       115 ~~~~~~~i~~~~~g~l~dr~-Grr~~l~~  142 (333)
                      .=+++..+.+...||+.||| |.++..++
T Consensus        50 sefIsGilVGa~iG~llD~~agTsPwglI   78 (116)
T COG5336          50 SEFISGILVGAGIGWLLDKFAGTSPWGLI   78 (116)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence            33445555566678999985 44444433

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=81.65  E-value=17  Score=33.85  Aligned_cols=50  Identities=20%  Similarity=0.259  Sum_probs=40.1

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHH
Q psy15539        163 FCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFV  212 (333)
Q Consensus       163 ~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~  212 (333)
                      +++..++..+..-..+....++-+.+.+|..-|+++.+.++...+|+-..
T Consensus       408 vI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP  457 (544)
T PF13000_consen  408 VIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWP  457 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCch
Confidence            33445666677777888888999999999999999999999988887433

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	333
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		2e-13

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 124/266 (46%), Gaps = 52/266 (19%)
Query: 106 ESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAV-----------PTLVGWGLI 154
            S L F  +S  +G + G  + G   +  GR++++ + AV           P L G+  I
Sbjct: 54  NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPEL-GFTSI 112
Query: 155 IWSQSVIMFCAG--------RLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCT 206
               +V ++ AG        R++ G G G  +++ PMY AE+A   IRG L ++ Q    
Sbjct: 113 NPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAII 172
Query: 207 AGILFVYAV---------GSWASVYGLSIICA--LLP-IFFVGLMLLMPESPQFHLKKNR 254
            G L VY V          SW +  G   + A   +P + F+ L+  +PESP++ + + +
Sbjct: 173 FGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGK 232
Query: 255 VKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMF 314
            +QA+  L+   G+     + + ++++SL+  R                R L+ G+GV+ 
Sbjct: 233 QEQAEGILRKIMGNTLATQA-VQEIKHSLDHGRKT------------GGRLLMFGVGVIV 279
Query: 315 I-------QQFGGINAVVFYTVKIFK 333
           I       QQF GIN V++Y  ++FK
Sbjct: 280 IGVMLSIFQQFVGINVVLYYAPEVFK 305

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	333
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.91
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.91
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.89
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.82
2xut_A	524	Proton/peptide symporter family protein; transport	99.73
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.58
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.54
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.5
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.45
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.44
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.34
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.09
2xut_A	524	Proton/peptide symporter family protein; transport	98.87

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.97  E-value=6.9e-29  Score=228.87  Aligned_cols=262  Identities=25%  Similarity=0.375  Sum_probs=205.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCC-----cccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHH
Q psy15539         65 ITQYMAALTATIGGFIMGTILGWTSPAGDRLIAGE-----YPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNT  139 (333)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~  139 (333)
                      +..+...++++++.+..|++.++++..+|.+.++.     .+.+.+....+++.+++.+|.++|++++|+++||+|||++
T Consensus         8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~   87 (491)
T 4gc0_A            8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            34566667778888999999999888877766540     0113344567899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH------------------HHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHH
Q psy15539        140 MLLLAVPTLVGWGLII------------------WSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYF  201 (333)
Q Consensus       140 l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~  201 (333)
                      ++++.+++.+++++++                  +++|++.++++|++.|++.|+..+..+.+++|+.|+++|++..++.
T Consensus        88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~  167 (491)
T 4gc0_A           88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN  167 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence            9999999999999988                  4789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHH------------HHHHHHHHHHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCC
Q psy15539        202 QLQCTAGILFVYAVGSWA------------SVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSE  269 (333)
Q Consensus       202 ~~~~~~g~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  269 (333)
                      +.+..+|.++++.++...            +|+..+.+..+..++.++..+++||+|+|+..+++.+++++.+++.+..+
T Consensus       168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~  247 (491)
T 4gc0_A          168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT  247 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence            999999999988887644            68888888888888888888899999999999999999999988876432


Q ss_pred             cchHHHHHHHHHHHHhhccCccchHhhhcChhhHHHHHHHHHHHHHHhhcchhhhhhchhccc
Q psy15539        270 YDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIF  332 (333)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~  332 (333)
                      ...++. .+.++..+++ ++.......++.    ++..+.+...+++++.+.+.+.+|.|+++
T Consensus       248 ~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (491)
T 4gc0_A          248 LATQAV-QEIKHSLDHG-RKTGGRLLMFGV----GVIVIGVMLSIFQQFVGINVVLYYAPEVF  304 (491)
T ss_dssp             HHHHHH-HHHHHHHHHH-HHHTTHHHHSCC----THHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hhHHHH-HHHHHHHHhh-hhhhhHHHHhcc----cHHHHHHHHHHHHHHhhhhHHHhcchHHH
Confidence            222111 1111111111 111112233332    34567777788888999999999988764

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.91  E-value=4.3e-24  Score=194.47  Aligned_cols=179  Identities=13%  Similarity=0.032  Sum_probs=159.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q psy15539         66 TQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAV  145 (333)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  145 (333)
                      .++..+..+.+..+..+.......+.+|.+.++   + .+..+.+++.+++.++..++++++|+++||+|||++++++.+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~  100 (451)
T 1pw4_A           25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ---G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI  100 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS---T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence            345556666667777777777888889999988   8 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH----HhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH--
Q psy15539        146 PTLVGWGLIIW----SQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA--  219 (333)
Q Consensus       146 ~~~~~~~~~~~----~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~--  219 (333)
                      +.+++.+++++    +++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++++  
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  180 (451)
T 1pw4_A          101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  180 (451)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999    999999999999999999999999999999999999999999999999999999999998775  


Q ss_pred             --H-HHHHHHHHHHHHHHH-HHHhhcccCChHH
Q psy15539        220 --S-VYGLSIICALLPIFF-VGLMLLMPESPQF  248 (333)
Q Consensus       220 --~-~~~~~~~~~~~~~~~-~~~~~~~~e~~~~  248 (333)
                        + |++.+++.+++.++. ++..+++||+|+.
T Consensus       181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~  213 (451)
T 1pw4_A          181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQS  213 (451)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhh
Confidence              6 999999988877664 4445678887753

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.91  E-value=3.8e-23  Score=187.57  Aligned_cols=175  Identities=13%  Similarity=0.095  Sum_probs=151.7

Q ss_pred             HHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q psy15539         69 MAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTL  148 (333)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~  148 (333)
                      .....+.+..+..++......+.+|.+.++   +|.+..+.+++.+++.++..++.++.|+++||+|||++++++.++.+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~  102 (438)
T 3o7q_A           26 IPFALLCSLFFLWAVANNLNDILLPQFQQA---FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA  102 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence            344455555566667777778888999888   99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH---HHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHHH-----
Q psy15539        149 VGWGLI---IWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWAS-----  220 (333)
Q Consensus       149 ~~~~~~---~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~-----  220 (333)
                      ++.+++   .++++++.++++|++.|++.+...+...++++|++|+++|++++++.+.+..+|.++++.+++++.     
T Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  182 (438)
T 3o7q_A          103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP  182 (438)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999   788999999999999999999999999999999999999999999999999999999999988773     


Q ss_pred             -------------------------HHHHHHHHHHHHHHHHHHhhc--ccCCh
Q psy15539        221 -------------------------VYGLSIICALLPIFFVGLMLL--MPESP  246 (333)
Q Consensus       221 -------------------------~~~~~~~~~~~~~~~~~~~~~--~~e~~  246 (333)
                                               |++.+++.+++.++..+..++  .||++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~  235 (438)
T 3o7q_A          183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQ  235 (438)
T ss_dssp             CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCT
T ss_pred             cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence                                     999998777766654444333  35543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.89  E-value=9.5e-23  Score=181.35  Aligned_cols=171  Identities=14%  Similarity=0.105  Sum_probs=152.6

Q ss_pred             HHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Q psy15539         73 TATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWG  152 (333)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~  152 (333)
                      .+.+..+..++......+.+|.+.++   +|.+..+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADMARD---LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTT---SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence            34455555666667777888988888   999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHH
Q psy15539        153 LIIWSQSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIIC  228 (333)
Q Consensus       153 ~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~  228 (333)
                      ++.++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..++|.+++++    +|++.+++.
T Consensus        81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  160 (375)
T 2gfp_A           81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL  160 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998876    899999988


Q ss_pred             HHHHHHHHH-HhhcccCCh
Q psy15539        229 ALLPIFFVG-LMLLMPESP  246 (333)
Q Consensus       229 ~~~~~~~~~-~~~~~~e~~  246 (333)
                      +++.++..+ ..+++||++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~  179 (375)
T 2gfp_A          161 LVLCAGVTFSMARWMPETR  179 (375)
T ss_dssp             HHHHHHHHCCCCCSSCCCS
T ss_pred             HHHHHHHHHHHHHHCcccC
Confidence            887766554 455677765

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.82  E-value=9.4e-19  Score=161.08  Aligned_cols=139  Identities=12%  Similarity=0.077  Sum_probs=127.3

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhh
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVV  180 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~  180 (333)
                      +|.+..+.+++.+++.++..+++++.|+++|| +|||+++.++.++.+++.++++++++.+.++++|++.|++.+...+.
T Consensus        49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  128 (491)
T 4aps_A           49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN  128 (491)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence            89999999999999999999999999999999 89999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccCCCcc--hhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhh
Q psy15539        181 VPMYTAEIAETEI--RGTLGTYFQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLML  240 (333)
Q Consensus       181 ~~~~~~e~~~~~~--rg~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  240 (333)
                      ..++++|++|+++  |+.+.++++.+..+|..++|.+++++    +|++.|++.++..++.++..+
T Consensus       129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  194 (491)
T 4aps_A          129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY  194 (491)
T ss_dssp             HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988  77788889999999999999998876    799999988776665544433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.73  E-value=5.2e-17  Score=150.71  Aligned_cols=138  Identities=19%  Similarity=0.204  Sum_probs=125.4

Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhhhhh
Q psy15539        104 VTESDLSFIGSSMALGAVFGSPVVGNLVDTV-GRKNTMLLLAVPTLVGWGLIIWSQ-SVIMFCAGRLLTGFGGGSFAVVV  181 (333)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~g~~~~~~  181 (333)
                      .+..+.+++.+++.++..++.++.|+++||+ |||+++.++.++.+++.+++.+++ +.+.++++|++.|++.+...+..
T Consensus        51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  130 (524)
T 2xut_A           51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV  130 (524)
T ss_dssp             TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence            9999999999999999999999999999999 999999999999999999999998 99999999999999999999999


Q ss_pred             hhhhcccCCCcchhhHHHH---HHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhhc
Q psy15539        182 PMYTAEIAETEIRGTLGTY---FQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGLMLL  241 (333)
Q Consensus       182 ~~~~~e~~~~~~rg~~~~~---~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  241 (333)
                      .+++.|++|+++|+++.+.   .+.+..+|.+++|.+++++    +|++.|++.+++.++.++..++
T Consensus       131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999876666   8889999999999998876    7999998888777665544443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.58  E-value=2.3e-14  Score=130.03  Aligned_cols=153  Identities=12%  Similarity=0.054  Sum_probs=126.8

Q ss_pred             cchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhcc--chhHHHHHHHHHHH-HHHHHHHHH--hhHH
Q psy15539         87 WTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTV--GRKNTMLLLAVPTL-VGWGLIIWS--QSVI  161 (333)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~  161 (333)
                      ......|.+.++  .+|.+..+.+++.+...++.+++.++.|++.||+  |||+.+.++.++.. ++.++..+.  .+.+
T Consensus       270 ~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (451)
T 1pw4_A          270 GILDWSPTYLKE--VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPT  347 (451)
T ss_dssp             HHHHHHHHHBTT--BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHH
T ss_pred             HHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHH
Confidence            334456667665  3789999999999999999999999999999999  99999888877766 666655554  3677


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHH-HHHHHHHHhHHH----HHHHHHHHHHHHHHHHH
Q psy15539        162 MFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTA-GILFVYAVGSWA----SVYGLSIICALLPIFFV  236 (333)
Q Consensus       162 ~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~-g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  236 (333)
                      .+.++.++.|++.+...+....++.|.+|++.||++.++.+....+ |..+++.+.+++    +|+..+++.+++.++..
T Consensus       348 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  427 (451)
T 1pw4_A          348 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV  427 (451)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            7788888999998888888889999999999999999999999999 999999998876    67888888877777665


Q ss_pred             HHhhc
Q psy15539        237 GLMLL  241 (333)
Q Consensus       237 ~~~~~  241 (333)
                      +..++
T Consensus       428 ~~~~~  432 (451)
T 1pw4_A          428 ILLIV  432 (451)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.54  E-value=7.7e-16  Score=138.83  Aligned_cols=156  Identities=13%  Similarity=0.056  Sum_probs=103.1

Q ss_pred             cchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH---HHHHhhHH-H
Q psy15539         87 WTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGL---IIWSQSVI-M  162 (333)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~-~  162 (333)
                      ...+.+|.+.++  ++|.+..+.+++.+.+.++..++++++|+++||+|||++++++.++.+++...   ..+..... .
T Consensus        25 ~~~~~~~~~l~~--~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (417)
T 2cfq_A           25 AYFPFFPIWLHD--INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYN  102 (417)
T ss_dssp             HHTTTHHHHHHT--TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTT
T ss_pred             HHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556766544  28999999999999999999999999999999999999999888776543221   12222211 2


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhcccCCC--cchhhHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHH
Q psy15539        163 FCAGRLLTGFGGGSFAVVVPMYTAEIAET--EIRGTLGTYFQLQCTAGILFVYAVGSWA---SVYGLSIICALLPIFFVG  237 (333)
Q Consensus       163 ~~~~~~l~G~~~g~~~~~~~~~~~e~~~~--~~rg~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  237 (333)
                      +...+++.|++.+..++.....+.++.++  +.|+...+.......+|..++|.+++++   +|+..|++.++..++.++
T Consensus       103 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~  182 (417)
T 2cfq_A          103 ILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAV  182 (417)
T ss_dssp             CCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Confidence            33455566655555444444444444433  3456666666666777788888887766   588888877666544444


Q ss_pred             HhhcccC
Q psy15539        238 LMLLMPE  244 (333)
Q Consensus       238 ~~~~~~e  244 (333)
                      ..++.++
T Consensus       183 ~~~~~~~  189 (417)
T 2cfq_A          183 LLFFAKT  189 (417)
T ss_dssp             HSCSSCC
T ss_pred             HHHHcCc
Confidence            4444443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.50  E-value=2e-13  Score=125.43  Aligned_cols=154  Identities=13%  Similarity=-0.001  Sum_probs=108.5

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh-----hHHHHH
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQ-----SVIMFC  164 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~~~  164 (333)
                      ...|.+.+.   .+.+............+...++.++.+++.||+|||+.++.+....+++.+..+...     +...+.
T Consensus       298 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  374 (491)
T 4gc0_A          298 YYAPEVFKT---LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL  374 (491)
T ss_dssp             HHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             hcchHHHHh---cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH
Confidence            345556555   667767777777888889999999999999999999999999888888777665431     222222


Q ss_pred             HH-HHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHH
Q psy15539        165 AG-RLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----------SVYGLSIICALLPI  233 (333)
Q Consensus       165 ~~-~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~  233 (333)
                      .. .+..+++ .+..++.+.+.+|.+|++.|+++.++......+|..+++.+...+          ++...+++.+++++
T Consensus       375 ~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~  453 (491)
T 4gc0_A          375 SMLFYVAAFA-MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV  453 (491)
T ss_dssp             HHHHHHHHHH-TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            22 2222222 234467788999999999999999998888888888776665433          23345666666666


Q ss_pred             HH-HHHhhcccCChH
Q psy15539        234 FF-VGLMLLMPESPQ  247 (333)
Q Consensus       234 ~~-~~~~~~~~e~~~  247 (333)
                      +. ++.++++||++.
T Consensus       454 ~~~i~~~~~~PETkg  468 (491)
T 4gc0_A          454 LAALFMWKFVPETKG  468 (491)
T ss_dssp             HHHHHHHHHCCCCTT
T ss_pred             HHHHHHHheecCCCC
Confidence            54 445678999953

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.45  E-value=3.2e-13  Score=121.63  Aligned_cols=143  Identities=13%  Similarity=0.089  Sum_probs=114.3

Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhhhh
Q psy15539        104 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVVPM  183 (333)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~  183 (333)
                      .+....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++..+.++.+.+++..++.+++.+...+....
T Consensus       256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  335 (417)
T 2cfq_A          256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK  335 (417)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456678888888899999999999999999999999888888887777766677777777777788877767777788


Q ss_pred             hhcccCCCcchhhHHHH-HHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHH-hhcccCCh
Q psy15539        184 YTAEIAETEIRGTLGTY-FQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVGL-MLLMPESP  246 (333)
Q Consensus       184 ~~~e~~~~~~rg~~~~~-~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~e~~  246 (333)
                      +++|.+|++.||++.+. ++....+|..++|.+++++    ++...|.+.++++++..+. +++.||.+
T Consensus       336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            99999999999999998 5888889999999888866    6677777777777665544 34556554

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.44  E-value=6.9e-13  Score=119.89  Aligned_cols=146  Identities=9%  Similarity=-0.097  Sum_probs=115.8

Q ss_pred             hhhhhh-hcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy15539         90 PAGDRL-IAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRL  168 (333)
Q Consensus        90 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (333)
                      ...|.+ .++  .+|.+..+.+++.+...++..++.++.|+++||+|||+.+.++.++.+++.++..+.++...++. .+
T Consensus       279 ~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  355 (438)
T 3o7q_A          279 SYLIRYAVEE--IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LT  355 (438)
T ss_dssp             HHHHHHHHHH--STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HH
T ss_pred             HHHHHHhhhc--cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HH
Confidence            445666 555  25999999999999999999999999999999999999999999999988888888777665444 48


Q ss_pred             HHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH----H-HHHHHHHHHHHHHHHHHHhh
Q psy15539        169 LTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA----S-VYGLSIICALLPIFFVGLML  240 (333)
Q Consensus       169 l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~  240 (333)
                      +.|++.+..++...++..|.+|++ |+.+.++.. ...+|..++|.+.+++    + ++..+++.+++.++.++..+
T Consensus       356 ~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  430 (438)
T 3o7q_A          356 LCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFAR  430 (438)
T ss_dssp             HHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999876 888888766 4558888888888776    4 66667665555444433333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.34  E-value=1.5e-12  Score=119.51  Aligned_cols=149  Identities=11%  Similarity=0.006  Sum_probs=113.6

Q ss_pred             hhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHH-----HHHHHHHHHHHHHHHHh------
Q psy15539         90 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML-----LLAVPTLVGWGLIIWSQ------  158 (333)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~~~------  158 (333)
                      ..+|.+..+  ..+.+....+++.+...++..++.++.+++.||+|||+...     ++.++.+++.++..+..      
T Consensus       304 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (491)
T 4aps_A          304 VVLATFAAE--RVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTS  381 (491)
T ss_dssp             THHHHHHHH--SCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCC
T ss_pred             HHHHHHHHH--HhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            334445443  14555466777788888899999999999999999986654     67777777766666543      


Q ss_pred             ---hHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHH
Q psy15539        159 ---SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA---SVYGLSIICALLP  232 (333)
Q Consensus       159 ---~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~  232 (333)
                         +.+.+++..++.|++.+...+....++.|.+|++.||++.++.+....+|..+++.+.+++   ++...+.+.++++
T Consensus       382 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~  461 (491)
T 4aps_A          382 GKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGS  461 (491)
T ss_dssp             TTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence               6677778889999999998999999999999999999999999999999999999998876   4455666666666


Q ss_pred             HHHHHHhh
Q psy15539        233 IFFVGLML  240 (333)
Q Consensus       233 ~~~~~~~~  240 (333)
                      ++..+..+
T Consensus       462 ~~~~~~~~  469 (491)
T 4aps_A          462 VVLGIVLV  469 (491)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            65444433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.09  E-value=8.7e-11  Score=103.90  Aligned_cols=127  Identities=15%  Similarity=0.080  Sum_probs=98.0

Q ss_pred             chhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH-HHHHHH--HHHH--HhhHHH
Q psy15539         88 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP-TLVGWG--LIIW--SQSVIM  162 (333)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~--~~~~--~~~~~~  162 (333)
                      .....|.+.++  .+|.++.+.+++.+...++..++.++.+++.||+|++.  ..+..+ ..++..  ....  ..+.+.
T Consensus       218 ~~~~~~~~~~~--~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (375)
T 2gfp_A          218 FEACSGVLMGA--VLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWT  293 (375)
T ss_dssp             HHHHCSCSSHH--HHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHH
Confidence            33445655544  37888889999999999999999999999999998832  233322 222222  2222  236677


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        163 FCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       163 ~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      +++..++.|++.+...+....++.|.+| ++||++.++.+....+|..+++.+.+.+
T Consensus       294 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l  349 (375)
T 2gfp_A          294 LLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAML  349 (375)
T ss_dssp             HHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788889999999999999999999998 8999999999999999999998887776

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.87  E-value=3e-09  Score=98.32  Aligned_cols=112  Identities=16%  Similarity=0.149  Sum_probs=85.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhh----hccch----hHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHH
Q psy15539        108 DLSFIGSSMALGAVFGSPVVGNLV----DTVGR----KNTMLLLAVPTLVGWGLIIWS---------QSVIMFCAGRLLT  170 (333)
Q Consensus       108 ~~~~~~~~~~~~~~i~~~~~g~l~----dr~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~  170 (333)
                      ..+++.+...++..++.++.+++.    +|.|+    ++.+.++.++.+++.++..+.         .+.+.+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            356666666667777777776664    55543    245667777777777766653         2566777888999


Q ss_pred             hhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy15539        171 GFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA  219 (333)
Q Consensus       171 G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  219 (333)
                      |++.+...+....++.|.+|++.||+++|+.+....+|..+++.+.+.+
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~  464 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSV  464 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	333
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	6e-08
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	9e-06

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 51.6 bits (122), Expect = 6e-08
 Identities = 25/231 (10%), Positives = 68/231 (29%), Gaps = 11/231 (4%)

Query: 102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM----LLLAVPTLVGWGLIIWS 157
              +  DL F  S +++   F   ++G++ D    +  +    +L A   L    +   +
Sbjct: 54  QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT 113

Query: 158 QSVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGS 217
            S+ +      L G+  G                + RG + + +      G      +  
Sbjct: 114 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 173

Query: 218 WASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEIT 277
               +      AL    F  +++ +            ++   +S       EY  D    
Sbjct: 174 LGMAWFNDWHAALYMPAFCAILVAL-------FAFAMMRDTPQSCGLPPIEEYKNDYPDD 226

Query: 278 DMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYT 328
             + + ++  + ++ +             +  + V  ++      +  +  
Sbjct: 227 YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLK 277

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 44.8 bits (104), Expect = 9e-06
 Identities = 26/173 (15%), Positives = 54/173 (31%), Gaps = 10/173 (5%)

Query: 104 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMF 163
           +++SD   I ++++L ++   P+ G L D +G +  +L +    LV +          + 
Sbjct: 40  ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99

Query: 164 CAGRLLTGFGGGSFAVVVPMYTAEIAETEIRG----------TLGTYFQLQCTAGILFVY 213
               L+    GG +        A   E  I                +  +    G   V 
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG 159

Query: 214 AVGSWASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFR 266
            + +  + +   +      I  V L     ++P      N V     +     
Sbjct: 160 IMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKL 212

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	333
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.91
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.61
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.58
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.47

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=3.1e-24  Score=192.64  Aligned_cols=178  Identities=13%  Similarity=0.019  Sum_probs=149.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q psy15539         66 TQYMAALTATIGGFIMGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAV  145 (333)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~  145 (333)
                      .+|..+..+.++.+....+...++...|.+ .+   +|++.++.|++.+++.+++.++++++|+++||+|||+++.++.+
T Consensus        22 ~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~-~~---~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   97 (447)
T d1pw4a_          22 LRWQIFLGIFFGYAAYYLVRKNFALAMPYL-VE---QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI   97 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHHHT-TS---STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            456666666666666666666666667754 45   89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh----hHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhHHH--
Q psy15539        146 PTLVGWGLIIWSQ----SVIMFCAGRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTAGILFVYAVGSWA--  219 (333)
Q Consensus       146 ~~~~~~~~~~~~~----~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~~--  219 (333)
                      +.+++.++++++.    +++.++++|++.|++.|...+....+++|++|+++|++++++.+.+..+|..+++.++...  
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  177 (447)
T d1pw4a_          98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  177 (447)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence            9999999887754    6778999999999999999999999999999999999999999999999999998877654  


Q ss_pred             ---HHHHHHHHHHHHHHHHH-HHhhcccCChH
Q psy15539        220 ---SVYGLSIICALLPIFFV-GLMLLMPESPQ  247 (333)
Q Consensus       220 ---~~~~~~~~~~~~~~~~~-~~~~~~~e~~~  247 (333)
                         +|++.+++.+++.++.. +.+++.+++|+
T Consensus       178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (447)
T d1pw4a_         178 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  209 (447)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             hhhcccccchhhhhhHHHHHHHHHHhcccchh
Confidence               78888888777776644 44455666654

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=3.8e-15  Score=130.42  Aligned_cols=143  Identities=13%  Similarity=0.062  Sum_probs=123.3

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhhhhh
Q psy15539        102 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVIMFCAGRLLTGFGGGSFAVVV  181 (333)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~  181 (333)
                      .+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  333 (417)
T d1pv7a_         254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGC  333 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence            56666778888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccCCCcchhhHHHH-HHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHH-HhhcccC
Q psy15539        182 PMYTAEIAETEIRGTLGTY-FQLQCTAGILFVYAVGSWA----SVYGLSIICALLPIFFVG-LMLLMPE  244 (333)
Q Consensus       182 ~~~~~e~~~~~~rg~~~~~-~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~e  244 (333)
                      .+++.|.+|++.|+++.++ .+....+|..++|.+.+++    +++..+++.+++.++..+ ..+.+++
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999997 4567778888888887776    778888888777766544 3444443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=6.8e-15  Score=128.77  Aligned_cols=163  Identities=15%  Similarity=0.054  Sum_probs=108.4

Q ss_pred             hhhhccchhhhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhHH
Q psy15539         82 GTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIWSQSVI  161 (333)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~  161 (333)
                      ....+...+.+|.+.++  ++|.|+++.|++.+++.++..++++++|+++||+|||++++++.++..++.++..+..+..
T Consensus        20 ~~~~~~~~~~l~~~l~~--~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~   97 (417)
T d1pv7a_          20 FFIMGAYFPFFPIWLHD--INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP   97 (417)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            33444555667776544  2899999999999999999999999999999999999999999998888888887765544


Q ss_pred             HH----HHHHHHHhhhhhhhhhhhhhhhcccCCC--cchhhHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHH-HH
Q psy15539        162 MF----CAGRLLTGFGGGSFAVVVPMYTAEIAET--EIRGTLGTYFQLQCTAGILFVYAVGSWA---SVYGLSIICA-LL  231 (333)
Q Consensus       162 ~~----~~~~~l~G~~~g~~~~~~~~~~~e~~~~--~~rg~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~-~~  231 (333)
                      ..    ++.+.+.+.+.+...........+..++  +.+....+........+..+++.+++.+   +|+..+.... ..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  177 (417)
T d1pv7a_          98 LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCA  177 (417)
T ss_dssp             HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHH
Confidence            33    3444444444444444443333333322  2334455566677777777777777766   3444444444 33


Q ss_pred             HHHHHHHhhcccCCh
Q psy15539        232 PIFFVGLMLLMPESP  246 (333)
Q Consensus       232 ~~~~~~~~~~~~e~~  246 (333)
                      .++.++..+..++++
T Consensus       178 ~~~~~~~~~~~~~~~  192 (417)
T d1pv7a_         178 LILAVLLFFAKTDAP  192 (417)
T ss_dssp             HHHHHHHHSSCCCSC
T ss_pred             HHHHHHHHHHhcccc
Confidence            444555556666665

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=5.6e-13  Score=118.30  Aligned_cols=148  Identities=14%  Similarity=0.008  Sum_probs=110.9

Q ss_pred             hhhhhhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH-----HhhHHHHHH
Q psy15539         91 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTLVGWGLIIW-----SQSVIMFCA  165 (333)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~  165 (333)
                      ..|.+..+  ..+.+..+.++..+...++.+++.++.|++.||++|++......+...+..+....     ..+.+..++
T Consensus       271 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (447)
T d1pw4a_         271 WSPTYLKE--VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI  348 (447)
T ss_dssp             HHHHHBTT--BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHH
T ss_pred             hhhhhccc--ccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHH
Confidence            34555554  37889999999999999999999999999999999876554444333333222222     346777778


Q ss_pred             HHHHHhhhhhhhhhhhhhhhcccCCCcchhhHHHHHHHHHHH-HHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHhh
Q psy15539        166 GRLLTGFGGGSFAVVVPMYTAEIAETEIRGTLGTYFQLQCTA-GILFVYAVGSWA----SVYGLSIICALLPIFFVGLML  240 (333)
Q Consensus       166 ~~~l~G~~~g~~~~~~~~~~~e~~~~~~rg~~~~~~~~~~~~-g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  240 (333)
                      +.++.|++.++..+....+..|.+|++.||++.|+.+....+ |.+++|.+.+++    +|+..+++.+++.++..+..+
T Consensus       349 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         349 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            888889988888888999999999999999999998776655 566678877766    778877777666665544433