Psyllid ID: psy15550

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MPQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEPFIKWLREAEEEDSDSEESDDDLPNLGALTFGKVVHAELLDFKYN
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHEEHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHcHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEEHEHHccccc
Coil and Loop (DISEMBL)
mpqcprftheDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEPFIKWLREaeeedsdseesdddlpnlgaltfGKVVHAELLDFKYN
Flexible Loop (DISEMBL)
mpqcprftheDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKtskkyvskelsaeirsraepFIKWLREAEeedsdseesdddlpnlgaLTFGKVVHAELLDFKYN
Low Complexity Region (SEG)
MPQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEPFIKWLREAeeedsdseesdddLPNLGALTFGKVVHAELLDFKYN
Disordered region (IsUnstruct)
*********EDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVS************PFIKWL*******************LGALTFGKVVHAELLDF***
Disordered Region (DISOPRED)
MPQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWA*****************SRAEPFIKW*********************GALTFGKVVHAELLDFKY*
Disordered Region (DISEMBL)
MPQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEPFIKWLRE*************DLPNLGALTFGKVVHAELLDFKYN
Disordered Region (DISPRO)
MPQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEPFIKWLREAE***********DLPNLGALTFGKVVHAELLDFKYN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEPFIKWLREAEEEDSDSEESDDDLPNLGALTFGKVVHAELLDFKYN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
P55010	431	Eukaryotic translation in	yes	N/A	0.672	0.194	0.630	2e-26
Q5R4L0	431	Eukaryotic translation in	yes	N/A	0.672	0.194	0.630	3e-26
P59325	429	Eukaryotic translation in	yes	N/A	0.672	0.195	0.630	3e-26
Q07205	429	Eukaryotic translation in	yes	N/A	0.672	0.195	0.630	3e-26
Q9VXK6	464	Eukaryotic translation in	yes	N/A	0.704	0.189	0.568	3e-23
Q22918	436	Eukaryotic translation in	no	N/A	0.656	0.188	0.5	1e-16
P38431	405	Eukaryotic translation in	yes	N/A	0.576	0.177	0.375	3e-10
Q09689	395	Probable eukaryotic trans	yes	N/A	0.592	0.187	0.378	6e-08
P55876	451	Eukaryotic translation in	N/A	N/A	0.672	0.186	0.326	4e-06
Q9C8F1	439	Probable eukaryotic trans	yes	N/A	0.576	0.164	0.379	5e-06

>sp|P55010|IF5_HUMAN Eukaryotic translation initiation factor 5 OS=Homo sapiens GN=EIF5 PE=1 SV=2

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 70/84 (83%)

Query: 6   RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
           RF H + KAQRYLL+G+E V+A+H+ +L+S +P ILK  YD D+LEE+V++ W+EK SKK
Sbjct: 302 RFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKK 361

Query: 66  YVSKELSAEIRSRAEPFIKWLREA 89
           YVSKEL+ EIR +AEPFIKWL+EA
Sbjct: 362 YVSKELAKEIRVKAEPFIKWLKEA 385

Catalyzes the hydrolysis of GTP bound to the 40S ribosomal initiation complex (40S.mRNA.Met-tRNA[F].eIF-2.GTP) with the subsequent joining of a 60S ribosomal subunit resulting in the release of eIF-2 and the guanine nucleotide. The subsequent joining of a 60S ribosomal subunit results in the formation of a functional 80S initiation complex (80S.mRNA.Met-tRNA[F]).
Homo sapiens (taxid: 9606)

>sp|Q5R4L0|IF5_PONAB Eukaryotic translation initiation factor 5 OS=Pongo abelii GN=EIF5 PE=2 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 70/84 (83%)

Query: 6   RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
           RF H + KAQRYLL+G+E V+A+H+ +L+S +P ILK  YD D+LEE+V++ W+EK SKK
Sbjct: 302 RFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKK 361

Query: 66  YVSKELSAEIRSRAEPFIKWLREA 89
           YVSKEL+ EIR +AEPFIKWL+EA
Sbjct: 362 YVSKELAKEIRVKAEPFIKWLKEA 385

Catalyzes the hydrolysis of GTP bound to the 40S ribosomal initiation complex (40S.mRNA.Met-tRNA[F].eIF-2.GTP) with the subsequent joining of a 60S ribosomal subunit resulting in the release of eIF-2 and the guanine nucleotide. The subsequent joining of a 60S ribosomal subunit results in the formation of a functional 80S initiation complex (80S.mRNA.Met-tRNA[F]).

Pongo abelii (taxid: 9601)

>sp|P59325|IF5_MOUSE Eukaryotic translation initiation factor 5 OS=Mus musculus GN=Eif5 PE=1 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 70/84 (83%)

Query: 6   RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
           RF H + KAQRYLL+G+E V+A+H+ +L+S +P ILK  YD D+LEE+V++ W+EK SKK
Sbjct: 300 RFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKK 359

Query: 66  YVSKELSAEIRSRAEPFIKWLREA 89
           YVSKEL+ EIR +AEPFIKWL+EA
Sbjct: 360 YVSKELAKEIRVKAEPFIKWLKEA 383

Catalyzes the hydrolysis of GTP bound to the 40S ribosomal initiation complex (40S.mRNA.Met-tRNA[F].eIF-2.GTP) with the subsequent joining of a 60S ribosomal subunit resulting in the release of eIF-2 and the guanine nucleotide. The subsequent joining of a 60S ribosomal subunit results in the formation of a functional 80S initiation complex (80S.mRNA.Met-tRNA[F]).

Mus musculus (taxid: 10090)

>sp|Q07205|IF5_RAT Eukaryotic translation initiation factor 5 OS=Rattus norvegicus GN=Eif5 PE=1 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 70/84 (83%)

Query: 6   RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
           RF H + KAQRYLL+G+E V+A+H+ +L+S +P ILK  YD D+LEE+V++ W+EK SKK
Sbjct: 300 RFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKK 359

Query: 66  YVSKELSAEIRSRAEPFIKWLREA 89
           YVSKEL+ EIR +AEPFIKWL+EA
Sbjct: 360 YVSKELAKEIRVKAEPFIKWLKEA 383

Catalyzes the hydrolysis of GTP bound to the 40S ribosomal initiation complex (40S.mRNA.Met-tRNA[F].eIF-2.GTP) with the subsequent joining of a 60S ribosomal subunit resulting in the release of eIF-2 and the guanine nucleotide. The subsequent joining of a 60S ribosomal subunit results in the formation of a functional 80S initiation complex (80S.mRNA.Met-tRNA[F]).

Rattus norvegicus (taxid: 10116)

>sp|Q9VXK6|IF5_DROME Eukaryotic translation initiation factor 5 OS=Drosophila melanogaster GN=eIF5 PE=1 SV=1

 Score =  107 bits (266), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/88 (56%), Positives = 65/88 (73%)

Query: 2   PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEK 61
           P   RFT  + KAQRYL+ G+EQ + LHK  L+S V GI KLFYD DIL+E V+LEWA+K
Sbjct: 321 PLLLRFTLNNPKAQRYLIGGVEQTVELHKGILMSKVAGIFKLFYDLDILDEAVILEWAQK 380

Query: 62  TSKKYVSKELSAEIRSRAEPFIKWLREA 89
            SK++VSK ++AEI  +A PF+ WL+ A
Sbjct: 381 VSKRHVSKNIAAEIHEKAMPFVLWLKNA 408

Catalyzes the hydrolysis of GTP bound to the 40S ribosomal initiation complex (40S.mRNA.Met-tRNA[F].eIF-2.GTP) with the subsequent joining of a 60S ribosomal subunit resulting in the release of eIF-2 and the guanine nucleotide. The subsequent joining of a 60S ribosomal subunit results in the formation of a functional 80S initiation complex (80S.mRNA.Met-tRNA[F]).

Drosophila melanogaster (taxid: 7227)

>sp|Q22918|IF5_CAEEL Eukaryotic translation initiation factor 5 OS=Caenorhabditis elegans GN=C37C3.2 PE=2 SV=2

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 53/82 (64%)

Query: 6   RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
           RFT  D KAQRYLL G+EQVI  H+ +LLS    I+K  YD D+ EE  L+ W EK S K
Sbjct: 289 RFTLNDKKAQRYLLGGVEQVIHKHEAELLSKSAHIIKSLYDEDVCEEDSLISWGEKPSSK 348

Query: 66  YVSKELSAEIRSRAEPFIKWLR 87
           YVSK  + +I   ++P + WL+
Sbjct: 349 YVSKSFAKKIIENSQPVLNWLK 370

Catalyzes the hydrolysis of GTP bound to the 40S ribosomal initiation complex (40S.mRNA.Met-tRNA[F].eIF-2.GTP) with the subsequent joining of a 60S ribosomal subunit resulting in the release of eIF-2 and the guanine nucleotide. The subsequent joining of a 60S ribosomal subunit results in the formation of a functional 80S initiation complex (80S.mRNA.Met-tRNA[F]).

Caenorhabditis elegans (taxid: 6239)

>sp|P38431|IF5_YEAST Eukaryotic translation initiation factor 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIF5 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 48/72 (66%)

Query: 15  QRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAE 74
           ++  + GIE+ + L  + L+ ++P IL   Y+ DI+ E+ ++ +  K+SKK+V KE+S +
Sbjct: 321 EKNFMGGIERFLGLEHKDLIPLLPKILVQLYNNDIISEEEIMRFGTKSSKKFVPKEVSKK 380

Query: 75  IRSRAEPFIKWL 86
           +R  A+PFI WL
Sbjct: 381 VRRAAKPFITWL 392

Catalyzes the hydrolysis of GTP bound to the 40S ribosomal initiation complex (40S.mRNA.Met-tRNA[F].eIF-2.GTP) with the subsequent joining of a 60S ribosomal subunit resulting in the release of eIF-2 and the guanine nucleotide. The subsequent joining of a 60S ribosomal subunit results in the formation of a functional 80S initiation complex (80S.mRNA.Met-tRNA[F]). eIF-5 is essential for cell viability.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q09689|IF5_SCHPO Probable eukaryotic translation initiation factor 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F7.05c PE=3 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query: 13  KAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELS 72
           K +R LL G E+++   +   + +VP +L   Y  D++ + +  +W  K SKKYVS+E S
Sbjct: 301 KHERALLGGFERLMENTELVHIDVVPKVLLEIYQNDLVSDDMFEKWGAKASKKYVSRETS 360

Query: 73  AEIRSRAEPFIKWL 86
            +I   AEPF+ WL
Sbjct: 361 KKIHEAAEPFLTWL 374

Catalyzes the hydrolysis of GTP bound to the 40S ribosomal initiation complex (40S.mRNA.Met-tRNA[F].eIF-2.GTP) with the subsequent joining of a 60S ribosomal subunit resulting in the release of eIF-2 and the guanine nucleotide. The subsequent joining of a 60S ribosomal subunit results in the formation of a functional 80S initiation complex (80S.mRNA.Met-tRNA[F]).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P55876|IF5_MAIZE Eukaryotic translation initiation factor 5 OS=Zea mays GN=EIF5 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 8/92 (8%)

Query: 11  DIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKE 70
           D  AQ  L+  IE        + L  VP +LK  YD DIL+E+ +++W        V+  
Sbjct: 368 DEGAQTLLVQAIEAFGGKCNPEALKEVPVVLKALYDGDILDEETIVDWYNDA----VAAG 423

Query: 71  LSAEIRSRAEPFIKWLREAEEEDSDSEESDDD 102
             +++   A+PF++WL+ AE +    EE DD+
Sbjct: 424 KDSQVVKNAKPFVEWLQSAESD----EEGDDE 451

Catalyzes the hydrolysis of GTP bound to the 40S ribosomal initiation complex (40S.mRNA.Met-tRNA[F].eIF-2.GTP) with the subsequent joining of a 60S ribosomal subunit resulting in the release of eIF-2 and the guanine nucleotide. The subsequent joining of a 60S ribosomal subunit results in the formation of a functional 80S initiation complex (80S.mRNA.Met-tRNA[F]).

Zea mays (taxid: 4577)

>sp|Q9C8F1|IF5Y_ARATH Probable eukaryotic translation initiation factor 5-1 OS=Arabidopsis thaliana GN=At1g36730 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 7/79 (8%)

Query: 14  AQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSA 73
           AQ  LLNGIE        +    V  ++K  YD DIL+E V++EW  K  K       S+
Sbjct: 364 AQMGLLNGIESFCMKASAEAAKEVALVIKGLYDEDILDEDVIVEWYNKGVK-------SS 416

Query: 74  EIRSRAEPFIKWLREAEEE 92
            +     PFI+WL+ AE E
Sbjct: 417 PVLKNVTPFIEWLQNAESE 435

Catalyzes the hydrolysis of GTP bound to the 40S ribosomal initiation complex (40S.mRNA.Met-tRNA[F].eIF-2.GTP) with the subsequent joining of a 60S ribosomal subunit resulting in the release of eIF-2 and the guanine nucleotide. The subsequent joining of a 60S ribosomal subunit results in the formation of a functional 80S initiation complex (80S.mRNA.Met-tRNA[F]).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
345490653	450	PREDICTED: eukaryotic translation initia	0.688	0.191	0.697	5e-29
198454584	472	GA27482 [Drosophila pseudoobscura pseudo	0.768	0.203	0.572	9e-28
195175536	472	GL11549 [Drosophila persimilis] gi|19410	0.768	0.203	0.572	9e-28
322795957	461	hypothetical protein SINV_07102 [Solenop	0.672	0.182	0.702	2e-27
332018843	464	Eukaryotic translation initiation factor	0.672	0.181	0.702	2e-27
383848991	454	PREDICTED: eukaryotic translation initia	0.656	0.180	0.695	2e-27
66515288	454	PREDICTED: eukaryotic translation initia	0.656	0.180	0.695	3e-27
340718966	454	PREDICTED: eukaryotic translation initia	0.656	0.180	0.695	3e-27
350396084	454	PREDICTED: eukaryotic translation initia	0.656	0.180	0.695	3e-27
307171464	465	Eukaryotic translation initiation factor	0.672	0.180	0.690	3e-27

>gi|345490653|ref|XP_003426424.1| PREDICTED: eukaryotic translation initiation factor 5-like isoform 2 [Nasonia vitripennis] gi|345490655|ref|XP_001602518.2| PREDICTED: eukaryotic translation initiation factor 5-like isoform 1 [Nasonia vitripennis]

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 71/86 (82%)

Query: 2   PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEK 61
           P   RFTHED+KAQ+YL+ GIEQ+IALHK+ L+S VPGILKLFYDYDILEEK L EWA K
Sbjct: 306 PLLLRFTHEDVKAQKYLIRGIEQIIALHKDVLMSKVPGILKLFYDYDILEEKALFEWASK 365

Query: 62  TSKKYVSKELSAEIRSRAEPFIKWLR 87
            SKKYVSK+L+ EI  +A PF+ WL+
Sbjct: 366 VSKKYVSKDLAQEIHDKAAPFLTWLK 391

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198454584|ref|XP_002137910.1| GA27482 [Drosophila pseudoobscura pseudoobscura] gi|198132861|gb|EDY68468.1| GA27482 [Drosophila pseudoobscura pseudoobscura]

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 55/96 (57%), Positives = 76/96 (79%)

Query: 6   RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
           RFTH + KAQRYL+ GIEQ + LH   L+S V GI K+FYD DIL+EKV+L+WA+K SK+
Sbjct: 325 RFTHNNPKAQRYLIGGIEQTVELHTNTLMSKVAGIFKIFYDLDILDEKVILDWAQKVSKR 384

Query: 66  YVSKELSAEIRSRAEPFIKWLREAEEEDSDSEESDD 101
           +VSK+++ EI  + +PF++WL++AEEEDS S  +DD
Sbjct: 385 HVSKKIATEIHEKVKPFVQWLKDAEEEDSSSGNNDD 420

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195175536|ref|XP_002028501.1| GL11549 [Drosophila persimilis] gi|194103727|gb|EDW25770.1| GL11549 [Drosophila persimilis]

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 55/96 (57%), Positives = 76/96 (79%)

Query: 6   RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
           RFTH + KAQRYL+ GIEQ + LH   L+S V GI K+FYD DIL+EKV+L+WA+K SK+
Sbjct: 325 RFTHNNPKAQRYLIGGIEQTVELHTNTLMSKVAGIFKIFYDLDILDEKVILDWAQKVSKR 384

Query: 66  YVSKELSAEIRSRAEPFIKWLREAEEEDSDSEESDD 101
           +VSK+++ EI  + +PF++WL++AEEEDS S  +DD
Sbjct: 385 HVSKKIATEIHEKVKPFVQWLKDAEEEDSSSGNNDD 420

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795957|gb|EFZ18583.1| hypothetical protein SINV_07102 [Solenopsis invicta]

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/84 (70%), Positives = 68/84 (80%)

Query: 6   RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
           RFTH+DIKAQ+YL+ GIEQVIALHK+ L+  VPGILKLFYD DILEEK   EW+ K SKK
Sbjct: 318 RFTHDDIKAQKYLIRGIEQVIALHKDALMPKVPGILKLFYDADILEEKAFDEWSSKVSKK 377

Query: 66  YVSKELSAEIRSRAEPFIKWLREA 89
           YVSK+LS EI  RA PF+ WL+ A
Sbjct: 378 YVSKDLSQEIHDRAAPFLTWLKVA 401

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018843|gb|EGI59399.1| Eukaryotic translation initiation factor 5 [Acromyrmex echinatior]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/84 (70%), Positives = 68/84 (80%)

Query: 6   RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
           RFTH+DIKAQ+YL+ GIEQVIALHK+ L+  VPGILKLFYD DILEEK   EW+ K SKK
Sbjct: 322 RFTHDDIKAQKYLIRGIEQVIALHKDALMPKVPGILKLFYDADILEEKAFDEWSNKVSKK 381

Query: 66  YVSKELSAEIRSRAEPFIKWLREA 89
           YVSK+LS EI  RA PF+ WL+ A
Sbjct: 382 YVSKDLSQEIHDRAAPFLTWLKVA 405

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848991|ref|XP_003700130.1| PREDICTED: eukaryotic translation initiation factor 5-like [Megachile rotundata]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 68/82 (82%)

Query: 6   RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
           RFTH+DIKAQ+YL+ GIEQVIALHK+ L+  VPGILKLFYD DILEEK L EW+ K +KK
Sbjct: 316 RFTHDDIKAQKYLIRGIEQVIALHKDALMPKVPGILKLFYDVDILEEKALFEWSNKVTKK 375

Query: 66  YVSKELSAEIRSRAEPFIKWLR 87
           YVSK+LS EI  +A PF+ WL+
Sbjct: 376 YVSKDLSQEIHDKAAPFLTWLK 397

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66515288|ref|XP_392511.2| PREDICTED: eukaryotic translation initiation factor 5 isoform 1 [Apis mellifera] gi|380012547|ref|XP_003690341.1| PREDICTED: eukaryotic translation initiation factor 5-like [Apis florea]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 68/82 (82%)

Query: 6   RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
           RFTH+DIKAQ+YL+ GIEQVIALHK+ L+  VPGILKLFYD DILEEK L EW+ K +KK
Sbjct: 316 RFTHDDIKAQKYLIRGIEQVIALHKDALMPKVPGILKLFYDADILEEKALFEWSNKVTKK 375

Query: 66  YVSKELSAEIRSRAEPFIKWLR 87
           YVSK+LS EI  +A PF+ WL+
Sbjct: 376 YVSKDLSQEIHDKAAPFLTWLQ 397

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718966|ref|XP_003397930.1| PREDICTED: eukaryotic translation initiation factor 5-like [Bombus terrestris]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 68/82 (82%)

Query: 6   RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
           RFTH+DIKAQ+YL+ GIEQVIALHK+ L+  VPGILKLFYD DILEEK L EW+ K +KK
Sbjct: 316 RFTHDDIKAQKYLIRGIEQVIALHKDALMPKVPGILKLFYDADILEEKALFEWSNKVTKK 375

Query: 66  YVSKELSAEIRSRAEPFIKWLR 87
           YVSK+LS EI  +A PF+ WL+
Sbjct: 376 YVSKDLSQEIHDKAAPFLTWLQ 397

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396084|ref|XP_003484435.1| PREDICTED: eukaryotic translation initiation factor 5-like [Bombus impatiens]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 68/82 (82%)

Query: 6   RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
           RFTH+DIKAQ+YL+ GIEQVIALHK+ L+  VPGILKLFYD DILEEK L EW+ K +KK
Sbjct: 316 RFTHDDIKAQKYLIRGIEQVIALHKDALMPKVPGILKLFYDADILEEKALFEWSNKVTKK 375

Query: 66  YVSKELSAEIRSRAEPFIKWLR 87
           YVSK+LS EI  +A PF+ WL+
Sbjct: 376 YVSKDLSQEIHDKAAPFLTWLQ 397

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307171464|gb|EFN63308.1| Eukaryotic translation initiation factor 5 [Camponotus floridanus]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/84 (69%), Positives = 68/84 (80%)

Query: 6   RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
           RFTH+DI+AQ+YL+ GIEQVIALHK+ L+  VPGILKLFYD DILEEK   EW+ K SKK
Sbjct: 322 RFTHDDIRAQKYLIRGIEQVIALHKDTLMPKVPGILKLFYDADILEEKAFDEWSSKVSKK 381

Query: 66  YVSKELSAEIRSRAEPFIKWLREA 89
           YVSK+LS EI  RA PF+ WL+ A
Sbjct: 382 YVSKDLSQEIHDRAAPFLTWLKVA 405

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
UNIPROTKB|F1N0F7	429	EIF5 "Uncharacterized protein"	0.672	0.195	0.642	6.6e-26
UNIPROTKB|Q5ZIE0	430	EIF5 "Uncharacterized protein"	0.672	0.195	0.654	2e-25
UNIPROTKB|E1C073	431	EIF5 "Uncharacterized protein"	0.672	0.194	0.654	2e-25
MGI|MGI:95309	429	Eif5 "eukaryotic translation i	0.672	0.195	0.630	2.5e-25
RGD|619861	429	Eif5 "eukaryotic translation i	0.672	0.195	0.630	2.5e-25
UNIPROTKB|Q07205	429	Eif5 "Eukaryotic translation i	0.672	0.195	0.630	2.5e-25
UNIPROTKB|P55010	431	EIF5 "Eukaryotic translation i	0.672	0.194	0.630	2.7e-25
UNIPROTKB|E2RJU3	430	EIF5 "Uncharacterized protein"	0.672	0.195	0.619	6e-25
UNIPROTKB|D4AEA4	386	D4AEA4 "Uncharacterized protei	0.672	0.217	0.583	1.8e-23
ZFIN|ZDB-GENE-030131-975	429	eif5 "eukaryotic translation i	0.672	0.195	0.619	7.5e-23

UNIPROTKB|F1N0F7 EIF5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 54/84 (64%), Positives = 71/84 (84%)

Query:     6 RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
             RF H + KAQRYLL+G+E V+A+H+ +L+S +P ILK  YD D+LEE+V++ W+EKTSKK
Sbjct:   300 RFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKTSKK 359

Query:    66 YVSKELSAEIRSRAEPFIKWLREA 89
             YVSKEL+ EIR +AEPFIKWL+EA
Sbjct:   360 YVSKELAKEIRVKAEPFIKWLKEA 383

GO:0005737 "cytoplasm" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|Q5ZIE0 EIF5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 289 (106.8 bits), Expect = 2.0e-25, P = 2.0e-25
 Identities = 55/84 (65%), Positives = 68/84 (80%)

Query:     6 RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
             RF H + KAQRYLL+G E V+A+H+ +L+S +P ILK  YD D+LEE+V+L WAEK SKK
Sbjct:   300 RFCHNNKKAQRYLLHGFECVVAMHQSQLISKIPHILKEMYDADLLEEEVILGWAEKASKK 359

Query:    66 YVSKELSAEIRSRAEPFIKWLREA 89
             YVSKEL  EIR +AEPFIKWL+EA
Sbjct:   360 YVSKELGKEIRVKAEPFIKWLKEA 383

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

UNIPROTKB|E1C073 EIF5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 289 (106.8 bits), Expect = 2.0e-25, P = 2.0e-25
 Identities = 55/84 (65%), Positives = 68/84 (80%)

Query:     6 RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
             RF H + KAQRYLL+G E V+A+H+ +L+S +P ILK  YD D+LEE+V+L WAEK SKK
Sbjct:   301 RFCHNNKKAQRYLLHGFECVVAMHQSQLISKIPHILKEMYDADLLEEEVILGWAEKASKK 360

Query:    66 YVSKELSAEIRSRAEPFIKWLREA 89
             YVSKEL  EIR +AEPFIKWL+EA
Sbjct:   361 YVSKELGKEIRVKAEPFIKWLKEA 384

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:95309 Eif5 "eukaryotic translation initiation factor 5" [Mus musculus (taxid:10090)]

 Score = 288 (106.4 bits), Expect = 2.5e-25, P = 2.5e-25
 Identities = 53/84 (63%), Positives = 70/84 (83%)

Query:     6 RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
             RF H + KAQRYLL+G+E V+A+H+ +L+S +P ILK  YD D+LEE+V++ W+EK SKK
Sbjct:   300 RFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKK 359

Query:    66 YVSKELSAEIRSRAEPFIKWLREA 89
             YVSKEL+ EIR +AEPFIKWL+EA
Sbjct:   360 YVSKELAKEIRVKAEPFIKWLKEA 383

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=ISO

GO:0005525 "GTP binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

RGD|619861 Eif5 "eukaryotic translation initiation factor 5" [Rattus norvegicus (taxid:10116)]

 Score = 288 (106.4 bits), Expect = 2.5e-25, P = 2.5e-25
 Identities = 53/84 (63%), Positives = 70/84 (83%)

Query:     6 RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
             RF H + KAQRYLL+G+E V+A+H+ +L+S +P ILK  YD D+LEE+V++ W+EK SKK
Sbjct:   300 RFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKK 359

Query:    66 YVSKELSAEIRSRAEPFIKWLREA 89
             YVSKEL+ EIR +AEPFIKWL+EA
Sbjct:   360 YVSKELAKEIRVKAEPFIKWLKEA 383

GO:0003743 "translation initiation factor activity" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0006412 "translation" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=IEA

UNIPROTKB|Q07205 Eif5 "Eukaryotic translation initiation factor 5" [Rattus norvegicus (taxid:10116)]

 Score = 288 (106.4 bits), Expect = 2.5e-25, P = 2.5e-25
 Identities = 53/84 (63%), Positives = 70/84 (83%)

Query:     6 RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
             RF H + KAQRYLL+G+E V+A+H+ +L+S +P ILK  YD D+LEE+V++ W+EK SKK
Sbjct:   300 RFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKK 359

Query:    66 YVSKELSAEIRSRAEPFIKWLREA 89
             YVSKEL+ EIR +AEPFIKWL+EA
Sbjct:   360 YVSKELAKEIRVKAEPFIKWLKEA 383

GO:0016070 "RNA metabolic process" evidence=IEA

UNIPROTKB|P55010 EIF5 "Eukaryotic translation initiation factor 5" [Homo sapiens (taxid:9606)]

 Score = 288 (106.4 bits), Expect = 2.7e-25, P = 2.7e-25
 Identities = 53/84 (63%), Positives = 70/84 (83%)

Query:     6 RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
             RF H + KAQRYLL+G+E V+A+H+ +L+S +P ILK  YD D+LEE+V++ W+EK SKK
Sbjct:   302 RFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKK 361

Query:    66 YVSKELSAEIRSRAEPFIKWLREA 89
             YVSKEL+ EIR +AEPFIKWL+EA
Sbjct:   362 YVSKELAKEIRVKAEPFIKWLKEA 385

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006413 "translational initiation" evidence=NAS;TAS

GO:0003743 "translation initiation factor activity" evidence=NAS

GO:0005829 "cytosol" evidence=NAS;TAS

GO:0003924 "GTPase activity" evidence=TAS

GO:0006446 "regulation of translational initiation" evidence=TAS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|E2RJU3 EIF5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 285 (105.4 bits), Expect = 6.0e-25, P = 6.0e-25
 Identities = 52/84 (61%), Positives = 70/84 (83%)

Query:     6 RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
             RF H + KAQRYLL+G+E V+A+H+ +L+S +P ILK  YD D+LEE+V++ W+EK SKK
Sbjct:   301 RFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKK 360

Query:    66 YVSKELSAEIRSRAEPFIKWLREA 89
             YVSK+L+ EIR +AEPFIKWL+EA
Sbjct:   361 YVSKDLAKEIRVKAEPFIKWLKEA 384

GO:0005737 "cytoplasm" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|D4AEA4 D4AEA4 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 49/84 (58%), Positives = 68/84 (80%)

Query:     6 RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
             RF   + KAQRYL +G+E V+A+H+ +L++ +P ILK  YD D+LEE+V++ W+EK SKK
Sbjct:   257 RFCRNNKKAQRYLFHGLECVVAMHQAQLIAKIPHILKEMYDVDLLEEEVIISWSEKASKK 316

Query:    66 YVSKELSAEIRSRAEPFIKWLREA 89
             YVSK+L+ EIR +AEPFIKWL+EA
Sbjct:   317 YVSKKLAKEIRVKAEPFIKWLKEA 340

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

ZFIN|ZDB-GENE-030131-975 eif5 "eukaryotic translation initiation factor 5" [Danio rerio (taxid:7955)]

 Score = 267 (99.0 bits), Expect = 7.5e-23, P = 7.5e-23
 Identities = 52/84 (61%), Positives = 65/84 (77%)

Query:     6 RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
             RF H + KAQ+YLL G E ++ LH+ +LL  VP ILK  YD D++EE V+L WAEK SKK
Sbjct:   295 RFCHNNKKAQKYLLGGFECLVKLHQTQLLPRVPIILKDLYDGDLVEEDVILAWAEKVSKK 354

Query:    66 YVSKELSAEIRSRAEPFIKWLREA 89
             YVSKEL+ EI ++AEPFIKWL+EA
Sbjct:   355 YVSKELAKEIHAKAEPFIKWLKEA 378

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R4L0	IF5_PONAB	No assigned EC number	0.6309	0.672	0.1948	yes	N/A
Q07205	IF5_RAT	No assigned EC number	0.6309	0.672	0.1958	yes	N/A
P59325	IF5_MOUSE	No assigned EC number	0.6309	0.672	0.1958	yes	N/A
Q9VXK6	IF5_DROME	No assigned EC number	0.5681	0.704	0.1896	yes	N/A
P55010	IF5_HUMAN	No assigned EC number	0.6309	0.672	0.1948	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	125
cd11561	157	cd11561, W2_eIF5, C-terminal W2 domain of eukaryot	5e-35
pfam02020	75	pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon	2e-21
smart00515	83	smart00515, eIF5C, Domain at the C-termini of GCD6	3e-17
cd11558	169	cd11558, W2_eIF2B_epsilon, C-terminal W2 domain of	2e-12
cd11560	194	cd11560, W2_eIF5C_like, C-terminal W2 domain of th	8e-07

>gnl|CDD|211399 cd11561, W2_eIF5, C-terminal W2 domain of eukaryotic translation initiation factor 5

 Score =  117 bits (296), Expect = 5e-35
 Identities = 49/89 (55%), Positives = 63/89 (70%), Gaps = 1/89 (1%)

Query: 6   RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
           +   ++ KAQ+ LL GIE+    H  +LL  VP ILK  YD DILEE+V+L+W EK SKK
Sbjct: 70  KLVTDE-KAQKALLGGIERFCGKHSPELLKKVPLILKALYDNDILEEEVILKWYEKVSKK 128

Query: 66  YVSKELSAEIRSRAEPFIKWLREAEEEDS 94
           YVSKE S ++R  AEPF++WL EAEEE+ 
Sbjct: 129 YVSKEKSKKVRKAAEPFVEWLEEAEEEEE 157

eIF5 functions as a GTPase acceleration protein (GAP), as well as a GDP dissociation inhibitor (GDI) during translational initiation in eukaryotes. The structure of this C-terminal domain resembles that of a set of concatenated HEAT repeats. Length = 157

>gnl|CDD|216850 pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon

 Score = 80.4 bits (199), Expect = 2e-21
 Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 13 KAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELS 72
           AQ+ LL  +E+       +L+ ++P ILKL YD DILEE+ +L+W EK+ K  V  E S
Sbjct: 1  DAQKDLLGALERFCGKENPELIKLLPKILKLLYDLDILEEEAILKWYEKSKK--VDGEGS 58

Query: 73 AEIRSRAEPFIKWLREA 89
           ++R +A+PF+ WL EA
Sbjct: 59 KKVRKQAKPFVTWLEEA 75

This domain of unknown function is found at the C-terminus of several translation initiation factors. Length = 75

>gnl|CDD|214705 smart00515, eIF5C, Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5

 Score = 70.4 bits (173), Expect = 3e-17
 Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 5/84 (5%)

Query: 6  RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
          +F  +D + Q  LL  IE+      EKL  ++P ILK  YD DILEE+ +L+W EK    
Sbjct: 5  KFLAKDEEEQLELLYAIEEFCVEL-EKLGKLLPKILKSLYDADILEEEAILKWYEKA--- 60

Query: 66 YVSKELSAEIRSRAEPFIKWLREA 89
           VS E   ++R  A+PF+ WL+EA
Sbjct: 61 -VSAEGKKKVRKNAKPFVTWLQEA 83

Length = 83

>gnl|CDD|211396 cd11558, W2_eIF2B_epsilon, C-terminal W2 domain of eukaryotic translation initiation factor 2B epsilon

 Score = 60.0 bits (146), Expect = 2e-12
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 11  DIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKE 70
               Q  LL  +E+   L  E+   +   +L   YD DILEE+ +LEW E       + E
Sbjct: 89  SQDDQVELLLALEEF-CLESEEGGPLFAKLLHALYDLDILEEEAILEWWE--EPDAGADE 145

Query: 71  LSAEIRSRAEPFIKWLREAEEEDS 94
              ++R   + FI+WL EAEEE  
Sbjct: 146 EMKKVRELVKKFIEWLEEAEEESD 169

eIF2B is a heteropentameric complex which functions as a guanine nucleotide exchange factor in the recycling of eIF-2 during the initiation of translation in eukaryotes. The epsilon and gamma subunits are sequence similar and both are essential in yeast. Epsilon appears to be the catalytically active subunit, with gamma enhancing its activity. The C-terminal domain of the eIF2B epsilon subunit contains bipartite motifs rich in acidic and aromatic residues, which are responsible for the interaction with eIF2. The structure of the domain resembles that of a set of concatenated HEAT repeats. Length = 169

>gnl|CDD|211398 cd11560, W2_eIF5C_like, C-terminal W2 domain of the eukaryotic translation initiation factor 5C and similar proteins

 Score = 45.3 bits (108), Expect = 8e-07
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 5/80 (6%)

Query: 13  KAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELS 72
           +A+  LLN I Q       K + +   I+KL Y  D+L E  +L+W +K       K   
Sbjct: 120 RAELALLNKI-QEYCYENMKFMKVFQKIVKLLYKADVLSEDAILKWYKKGHS---PKGKQ 175

Query: 73  AEIRSRAEPFIKWLREAEEE 92
             ++   EPF++WL+EAEEE
Sbjct: 176 VFLKQ-MEPFVEWLQEAEEE 194

eIF5C appears to be essential for the initiation of protein translation; its actual function, and specifically that of the C-terminal W2 domain, are not well understood. The Drosophila ortholog, kra (krasavietz) or exba (extra bases), may be involved in translational inhibition in neural development. The structure of this C-terminal domain resembles that of a set of concatenated HEAT repeats. Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
PF02020	84	W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003	99.95
smart00515	83	eIF5C Domain at the C-termini of GCD6, eIF-2B epsi	99.91
KOG2767|consensus	400		99.84
KOG2297|consensus	412		99.8
KOG1461|consensus	673		99.7

>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included []

Probab=99.95  E-value=2.3e-27  Score=158.22  Aligned_cols=83  Identities=45%  Similarity=0.722  Sum_probs=67.2

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHccccc
Q psy15550         12 IKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEPFIKWLREAEE   91 (125)
Q Consensus        12 ~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~~Fv~WLeeaeE   91 (125)
                      +++|+++|.|+|.+| .+++.+++.|++||+.||+.|||+|++|++||++ +++..+....+++|++++|||+||++|+|
T Consensus         1 ~~~Q~~~L~ale~~~-~~~~~~~~~~~~il~~LYd~Dil~Eeail~W~~~-~~~~~~~~~~~~~r~~~~~fi~WL~eaee   78 (84)
T PF02020_consen    1 EDDQVDLLNALEEFC-AENPNLMPLFPKILQQLYDEDILEEEAILEWYED-SKPAVDGEGRAKVRKQAQPFIEWLEEAEE   78 (84)
T ss_dssp             HHHHHHHHHHHHHHH-HHTCGHGGHHHHHHHHHHHTTSS-HHHHHHHHHC--SSSSCHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             CHHHHHHHHHHHHHH-HhCccHHHHHHHHHHHHhhhhhccHHHHHHHHHc-CCccccchhHHHHHHHHHHHHHHHhccCc
Confidence            478999999999999 6789999999999999999999999999999988 43333455578899999999999999998


Q ss_pred             ccCCC
Q psy15550         92 EDSDS   96 (125)
Q Consensus        92 Esdd~   96 (125)
                      ||+++
T Consensus        79 E~~ee   83 (84)
T PF02020_consen   79 ESDEE   83 (84)
T ss_dssp             -----
T ss_pred             cCCCC
Confidence            87754

The W2 domain has a globular fold and is exclusively composed out of alpha-helices [, , ]. The structure can be divided into a structural C-terminal core onto which the two N-terminal helices are attached. The core contains two aromatic/acidic residue-rich regions (AA boxes), which are important for mediating protein-protein interactions. For example, the W2 domain of H. sapiens eIF5 binds eIF2-beta, eIF3 and eIF1 [], and therefore plays an important role in multifactor complex assembly. The entry covers the entire W2 domain.; GO: 0005488 binding; PDB: 3D3M_A 3L6A_A 1PAQ_A 2FUL_D 2IU1_A 1UG3_B 3JUI_A.

>smart00515 eIF5C Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5

Probab=99.91  E-value=2.4e-24  Score=143.08  Aligned_cols=82  Identities=40%  Similarity=0.694  Sum_probs=72.6

Q ss_pred             CcccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHHH
Q psy15550          2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEP   81 (125)
Q Consensus         2 pll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~~   81 (125)
                      |+|++|+++. ++|+++|.++|.+|. +++...+.|++||+.||++|||+|++|++||+++++    .+...+++++++|
T Consensus         2 ~ll~~~~~~~-~~q~~~L~ale~~~~-~~~~~~~~~~~il~~LYd~dileEe~il~W~~~~~~----~~~~~~~~~~~~~   75 (83)
T smart00515        2 PLLKFLAKDE-EEQIDLLYAIEEFCV-ELEKLIKLLPKILKSLYDADILEEEAILKWYEKAVS----AEGKKKVRKNAKP   75 (83)
T ss_pred             hHHHHHHCCh-HHHHHHHHHHHHHHH-HcchHHHHHHHHHHHHhhhccccHHHHHHHHHcCCC----hHHHHHHHHHHhH
Confidence            7899999975 999999999999995 445578999999999999999999999999988753    2356889999999


Q ss_pred             HHHHHccc
Q psy15550         82 FIKWLREA   89 (125)
Q Consensus        82 Fv~WLeea   89 (125)
                      ||+||++|
T Consensus        76 fv~WL~eA   83 (83)
T smart00515       76 FVTWLQEA   83 (83)
T ss_pred             HHHHHHcC
Confidence            99999986

>KOG2767|consensus

Probab=99.84  E-value=5.1e-21  Score=155.02  Aligned_cols=93  Identities=55%  Similarity=0.890  Sum_probs=85.1

Q ss_pred             CcccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHHH
Q psy15550          2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEP   81 (125)
Q Consensus         2 pll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~~   81 (125)
                      ++|.+|+++++..|..+|..+|++|..++..+++..+.||+.||++||++|+.|++|+.+++.++++.+..+++++.++|
T Consensus       302 ~~l~k~~~~~~k~qr~LLggiE~~~~~~~~el~~kva~ilk~lYd~DI~~e~vi~~w~~K~skk~vsk~~sk~i~e~a~P  381 (400)
T KOG2767|consen  302 ALLLKFCTNNEKAQRYLLGGIERFVEKHEAELISKVAGILKELYDEDILEEEVIIKWGEKPSKKYVSKEKSKKIRENAKP  381 (400)
T ss_pred             HHHHHHHhccHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccccccchhhhhhhHhhhhH
Confidence            47889999877999999999999997777788999999999999999999999999999999999888889999999999


Q ss_pred             HHHHHcccccccC
Q psy15550         82 FIKWLREAEEEDS   94 (125)
Q Consensus        82 Fv~WLeeaeEEsd   94 (125)
                      ||+||++||+|++
T Consensus       382 fi~WL~~AESe~e  394 (400)
T KOG2767|consen  382 FIEWLKNAESEDE  394 (400)
T ss_pred             HHHHHHhcccccc
Confidence            9999999955444

>KOG2297|consensus

Probab=99.80  E-value=5.6e-20  Score=148.20  Aligned_cols=87  Identities=24%  Similarity=0.473  Sum_probs=80.1

Q ss_pred             CcccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHHH
Q psy15550          2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEP   81 (125)
Q Consensus         2 pll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~~   81 (125)
                      |||..|++++ .+.+.+|+.+|.+| +++..+|+.|+.|+..||..||++|+.|++||++++..   + +...+.++++|
T Consensus       326 PLL~af~s~g-~sEL~Ll~KvQe~C-Yen~~fMKaFqkiV~lfYk~dVLsEe~IL~Wyk~gh~~---K-Gk~~Fleqmkk  399 (412)
T KOG2297|consen  326 PLLAAFCSQG-QSELELLLKVQEYC-YENIHFMKAFQKIVVLFYKADVLSEETILKWYKEGHVA---K-GKSVFLEQMKK  399 (412)
T ss_pred             HHHHHHhcCC-hHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccc---c-cHHHHHHHHHH
Confidence            8999999987 99999999999998 89999999999999999999999999999999998753   3 25778999999


Q ss_pred             HHHHHcccccccC
Q psy15550         82 FIKWLREAEEEDS   94 (125)
Q Consensus        82 Fv~WLeeaeEEsd   94 (125)
                      ||+||++|||||+
T Consensus       400 FVeWL~~AEEEsE  412 (412)
T KOG2297|consen  400 FVEWLQNAEEESE  412 (412)
T ss_pred             HHHHHHhhhhccC
Confidence            9999999998864

>KOG1461|consensus

Probab=99.70  E-value=2.3e-17  Score=141.79  Aligned_cols=90  Identities=28%  Similarity=0.515  Sum_probs=78.2

Q ss_pred             CcccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHHH
Q psy15550          2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEP   81 (125)
Q Consensus         2 pll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~~   81 (125)
                      |++++|+++ ++.|+++|.+||.+| ..+..+.+.+.++++.||+.||++|++|++|+...+   ++.+..++.++++++
T Consensus       583 ~l~~~y~ks-~deqid~l~~led~~-~e~~~~~~~~~~~v~~lY~~dil~EdaI~~W~~~~~---~~~~~~~~~~~~~k~  657 (673)
T KOG1461|consen  583 PLLGNYIKS-EDEQIDLLLALEDKC-VESEELGPKAAKLVHYLYDYDILQEDAILSWSSQKA---GDDEEDAVYNQQLKK  657 (673)
T ss_pred             HHhhhhhhh-HHHHHHHHHHHHHHH-HhcccchHHHHHHHHHHHHHhHhhHHHHHHhhhccc---cchHHHHHHHHHHHH
Confidence            789999998 499999999999999 466777889999999999999999999999998733   244556778999999


Q ss_pred             HHHHHcccccccCCC
Q psy15550         82 FIKWLREAEEEDSDS   96 (125)
Q Consensus        82 Fv~WLeeaeEEsdd~   96 (125)
                      ||+||++|+|||+++
T Consensus       658 fv~WL~easeE~~~e  672 (673)
T KOG1461|consen  658 FVDWLKEASEEEESE  672 (673)
T ss_pred             HHHHHhhcccccccC
Confidence            999999999887754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	125
2iu1_A	208	Crystal Structure Of Eif5 C-Terminal Domain Length		9e-27
2ful_A	177	Crystal Structure Of The C-Terminal Domain Of S. Ce		4e-11

>pdb|2IU1|A Chain A, Crystal Structure Of Eif5 C-Terminal Domain Length = 208

Iteration: 1
 Score =  115 bits (287), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 70/84 (83%)
Query: 6   RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
           RF H + KAQRYLL+G+E V+A+H+ +L+S +P ILK  YD D+LEE+V++ W+EK SKK
Sbjct: 71  RFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKK 130
Query: 66  YVSKELSAEIRSRAEPFIKWLREA 89
           YVSKEL+ EIR +AEPFIKWL+EA
Sbjct: 131 YVSKELAKEIRVKAEPFIKWLKEA 154

>pdb|2FUL|A Chain A, Crystal Structure Of The C-Terminal Domain Of S. Cerevisiae Eif5 Length = 177

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 49/75 (65%)
Query: 15  QRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAE 74
           ++  + GIE+ + L  + L+ ++P IL   Y+ DI+ E+ ++ +  K+SKK+V KE+S +
Sbjct: 86  EKNFMGGIERFLGLEHKDLIPLLPKILVQLYNNDIISEEEIMRFGTKSSKKFVPKEVSKK 145
Query: 75  IRSRAEPFIKWLREA 89
           +R  A+PFI WL  A
Sbjct: 146 VRRAAKPFITWLETA 160

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	125
2iu1_A	208	EIF5, eukaryotic translation initiation factor 5;	1e-27
2ful_A	177	EIF-5, eukaryotic translation initiation factor 5;	3e-26
1paq_A	189	Translation initiation factor EIF-2B epsilon subun	2e-19
3jui_A	182	Translation initiation factor EIF-2B subunit EPSI;	8e-19
3d3m_A	168	Eukaryotic translation initiation factor 4 gamma 2	9e-14
3l6a_A	364	Eukaryotic translation initiation factor 4 gamma;	4e-10

>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens} Length = 208

 Score =  100 bits (249), Expect = 1e-27
 Identities = 61/97 (62%), Positives = 79/97 (81%)

Query: 6   RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
           RF H + KAQRYLL+G+E V+A+H+ +L+S +P ILK  YD D+LEE+V++ W+EK SKK
Sbjct: 71  RFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKK 130

Query: 66  YVSKELSAEIRSRAEPFIKWLREAEEEDSDSEESDDD 102
           YVSKEL+ EIR +AEPFIKWL+EAEEE S  EE D+D
Sbjct: 131 YVSKELAKEIRVKAEPFIKWLKEAEEESSGGEEEDED 167

>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae} Length = 177

 Score = 95.5 bits (237), Expect = 3e-26
 Identities = 30/93 (32%), Positives = 57/93 (61%)

Query: 10  EDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSK 69
              + ++  + GIE+ + L  + L+ ++P IL   Y+ DI+ E+ ++ +  K+SKK+V K
Sbjct: 81  VTPEYEKNFMGGIERFLGLEHKDLIPLLPKILVQLYNNDIISEEEIMRFGTKSSKKFVPK 140

Query: 70  ELSAEIRSRAEPFIKWLREAEEEDSDSEESDDD 102
           E+S ++R  A+PFI WL  AE +D + ++  + 
Sbjct: 141 EVSKKVRRAAKPFITWLETAESDDDEEDDELER 173

>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14 Length = 189

 Score = 78.1 bits (192), Expect = 2e-19
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 4/93 (4%)

Query: 6   RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
           R   ++ +    +   +E+++    +K   ++   L   YD DI+EE V+ +W +  S  
Sbjct: 101 RQAFDEEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVST- 159

Query: 66  YVSKELSAEIRSRAEPFIKWLREAEEEDSDSEE 98
                   E++     +++WL+ A+EE S  EE
Sbjct: 160 ---DPRYDEVKKLTVKWVEWLQNADEESSSEEE 189

>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} Length = 182

 Score = 76.6 bits (188), Expect = 8e-19
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 10  EDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSK 69
           +        L  IE    L  E L   +  +L  FY  +IL  + +L W     +    K
Sbjct: 98  KRAADHLEALAAIEDFF-LEHEALGISMAKVLMAFYQLEILAGETILSWFS--QRDTTDK 154

Query: 70  ELSAEIRSRAEPFIKWLREAEEEDSDSE 97
                   + + FI+WL+EAEEE S+ +
Sbjct: 155 GQQLRKNQQLQRFIQWLKEAEEESSEDD 182

>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} Length = 168

 Score = 63.2 bits (153), Expect = 9e-14
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 4/84 (4%)

Query: 6   RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
           +F H+ +  Q   L  ++     +      M+      FYD +I+EE+  L W E  +++
Sbjct: 89  KFLHDHVDLQVSALYALQVHCY-NSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQE 147

Query: 66  YVSKELSAEIRSRAEPFIKWLREA 89
           +  K  +     +   ++ WL  A
Sbjct: 148 FPGKGKA---LFQVNQWLTWLETA 168

>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364

 Score = 55.0 bits (131), Expect = 4e-10
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 6   RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
           +F H+ +  Q   L  + QV   +      M+      FYD +I+EE+  L W E  +++
Sbjct: 285 KFLHDHVDLQVSALYAL-QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQE 343

Query: 66  YVSKELSAEIRSRAEPFIKWLREA 89
           +  K  +     +   ++ WL  A
Sbjct: 344 FPGKGKALF---QVNQWLTWLETA 364

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
2iu1_A	208	EIF5, eukaryotic translation initiation factor 5;	99.96
2ful_A	177	EIF-5, eukaryotic translation initiation factor 5;	99.96
1paq_A	189	Translation initiation factor EIF-2B epsilon subun	99.93
3jui_A	182	Translation initiation factor EIF-2B subunit EPSI;	99.93
3d3m_A	168	Eukaryotic translation initiation factor 4 gamma 2	99.87
3l6a_A	364	Eukaryotic translation initiation factor 4 gamma;	99.75
1ug3_A	339	EIF4GI, eukaryotic protein synthesis initiation fa	99.23
3c5t_B	31	Exendin-4, exenatide; ligand-bound G protein-coupl	84.32
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	82.37

>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}

Probab=99.96  E-value=6.5e-30  Score=194.88  Aligned_cols=106  Identities=58%  Similarity=0.937  Sum_probs=89.5

Q ss_pred             CcccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHHH
Q psy15550          2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEP   81 (125)
Q Consensus         2 pll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~~   81 (125)
                      |+|++|++++...|+.+|.++|.+|+..+|.+++.|++||+.||+.|||+|++|++||+++++++++++.++++|++++|
T Consensus        67 ~lL~~~~~~~~~~Q~~lL~alE~~~~~~~~~~~~~~~~IL~~LYD~DIleEEaIl~W~~~~s~~~~~~e~~k~v~~~~~p  146 (208)
T 2iu1_A           67 RHFLRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEP  146 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHGGGHHHHHHHHHHTTSSCHHHHHHHHHSCCCSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccchhhhHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence            78999998556999999999999987778899999999999999999999999999999887666556556689999999


Q ss_pred             HHHHHcccccccCCCCCCCCCcccccc
Q psy15550         82 FIKWLREAEEEDSDSEESDDDLPNLGA  108 (125)
Q Consensus        82 Fv~WLeeaeEEsdd~eeddd~~~~~~~  108 (125)
                      ||+||++|+|||++++|+|+ ++|.++
T Consensus       147 FI~WL~EAEEEs~eeeeeee-d~~~e~  172 (208)
T 2iu1_A          147 FIKWLKEAEEESSGGEEEDE-DENIEV  172 (208)
T ss_dssp             HHHHHHCSSCCCCCCCCCCC-SCHHHH
T ss_pred             HHHHHHcccccccccccccc-ccccce
Confidence            99999999998876544433 344443

>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.3e-29  Score=188.92  Aligned_cols=97  Identities=31%  Similarity=0.654  Sum_probs=79.8

Q ss_pred             CcccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHHH
Q psy15550          2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEP   81 (125)
Q Consensus         2 pll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~~   81 (125)
                      |+|++|+++ .+.|+++|.+||.+|+++++.+++.|++||+.||+.|||+|++|++||+++++++++++..+++|++++|
T Consensus        74 ~lL~~~~~~-~~~q~~lL~ale~~~~~~~~~~~~~~~~IL~~LYd~DIleEeaIl~W~~~~skk~v~~e~~~~v~~~~~p  152 (177)
T 2ful_A           74 AFFTKILVT-PEYEKNFMGGIERFLGLEHKDLIPLLPKILVQLYNNDIISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKP  152 (177)
T ss_dssp             HHHHHHCCS-HHHHHHHHHHHHHHHHTTCGGGGGGHHHHHHHHHHTTSSCHHHHHHHHHCCCSSSSCHHHHHHHHHTTHH
T ss_pred             HHHHHHcCC-cHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccchhhhHHHHHHHhcCCcccCChHHHHHHHHHHHH
Confidence            789999976 5999999999999996678899999999999999999999999999999877555555667889999999


Q ss_pred             HHHHHcccccccCCCCCC
Q psy15550         82 FIKWLREAEEEDSDSEES   99 (125)
Q Consensus        82 Fv~WLeeaeEEsdd~eed   99 (125)
                      ||+||++|||||++++|+
T Consensus       153 FI~WL~eAEEEseeeeee  170 (177)
T 2ful_A          153 FITWLETAESDDDEEDDE  170 (177)
T ss_dssp             HHHHHHHCC---------
T ss_pred             HHHHHHcccccccccccc
Confidence            999999999987765443

>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14

Probab=99.93  E-value=1.1e-26  Score=174.24  Aligned_cols=90  Identities=26%  Similarity=0.367  Sum_probs=75.2

Q ss_pred             CcccccccCchHHHHHHHHHHHHHHH-hhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHH
Q psy15550          2 PQCPRFTHEDIKAQRYLLNGIEQVIA-LHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAE   80 (125)
Q Consensus         2 pll~~f~~~~~~~q~~~L~ale~~~~-~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~   80 (125)
                      |+|++|+++ .+.|+++|.++|.+|. .++|.+++.|++||+.||+.|||+|++|++||++++..  +  ..+++|++++
T Consensus        97 ~ll~~~~~~-~~~q~~lL~ale~~~~~~~~~~~~~~~~~il~~LYd~DileEe~il~W~~~~~~~--~--~~~~v~~~~~  171 (189)
T 1paq_A           97 LLFKRQAFD-EEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTD--P--RYDEVKKLTV  171 (189)
T ss_dssp             GGGGGTCCS-HHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHTCCCC--G--GGHHHHHHHH
T ss_pred             HHHHHHHcC-cHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhccccccccHHHHHHHhCCCch--H--HHHHHHHHHH
Confidence            899999986 5999999999999985 37888899999999999999999999999999887632  2  3458999999


Q ss_pred             HHHHHHcccccccCCC
Q psy15550         81 PFIKWLREAEEEDSDS   96 (125)
Q Consensus        81 ~Fv~WLeeaeEEsdd~   96 (125)
                      |||+||++||||||++
T Consensus       172 ~Fi~WL~eAEeEs~~e  187 (189)
T 1paq_A          172 KWVEWLQNADEESSSE  187 (189)
T ss_dssp             HHHHHHHHTC------
T ss_pred             HHHHHHhccCcccccc
Confidence            9999999999887653

>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0

Probab=99.93  E-value=4.9e-27  Score=175.41  Aligned_cols=90  Identities=28%  Similarity=0.487  Sum_probs=76.1

Q ss_pred             CcccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHHH
Q psy15550          2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEP   81 (125)
Q Consensus         2 pll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~~   81 (125)
                      |+|.+|+++ ++.|+++|.++|.+| ..++.+++.|+.||+.||+.|||+|++|++||+++++.  +++..+++|++++|
T Consensus        91 ~ll~~~~~~-~~~q~~lL~ale~~~-~~~~~~~~~~~~il~~LYd~DileEe~Il~W~~~~~~~--~~~~~~~vr~~~~~  166 (182)
T 3jui_A           91 PVFRNYIKR-AADHLEALAAIEDFF-LEHEALGISMAKVLMAFYQLEILAGETILSWFSQRDTT--DKGQQLRKNQQLQR  166 (182)
T ss_dssp             HHHHHHCCS-HHHHHHHHHHHHHHH-HHCGGGGGGHHHHHHHHHHTTSSCHHHHHHHHTCCC----CHHHHHTTCHHHHH
T ss_pred             HHHHHHhCC-HHHHHHHHHHHHHHH-HhCchHHHHHHHHHHHHhhcchhchHHHHHHHHcCCcc--ccchHHHHHHHHHH
Confidence            789999997 599999999999998 57888899999999999999999999999999887653  23445678999999


Q ss_pred             HHHHHcccccccCC
Q psy15550         82 FIKWLREAEEEDSD   95 (125)
Q Consensus        82 Fv~WLeeaeEEsdd   95 (125)
                      ||+||++|||||||
T Consensus       167 Fi~WL~eAEEEs~e  180 (182)
T 3jui_A          167 FIQWLKEAEEESSE  180 (182)
T ss_dssp             HHHHHHHHHC----
T ss_pred             HHHHHhccCcccCC
Confidence            99999999988764

>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}

Probab=99.87  E-value=7.9e-23  Score=150.54  Aligned_cols=84  Identities=21%  Similarity=0.409  Sum_probs=74.0

Q ss_pred             CcccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHHH
Q psy15550          2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEP   81 (125)
Q Consensus         2 pll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~~   81 (125)
                      |+|.+|++++.+.|+++|+++|.+|. .++.+++.|+.||+.||+.|||+||+|++||++++..   .+...+++++++|
T Consensus        85 ~ll~~~~~~~~~~q~~lL~alq~~~~-~~~~~~~~~~~il~~LYd~DvleEe~il~W~~~~~~~---~~~~~~~~~~~~~  160 (168)
T 3d3m_A           85 PVMQKFLHDHVDLQVSALYALQVHCY-NSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQE---FPGKGKALFQVNQ  160 (168)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCTTHHHHHHHHHHHTTSSCHHHHHHHHHCCSCC---CTTHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHhhcchhhHHHHHHHHhCCcch---hhHHHHHHHHHHH
Confidence            78999998656999999999999985 6778889999999999999999999999999886533   2236789999999


Q ss_pred             HHHHHccc
Q psy15550         82 FIKWLREA   89 (125)
Q Consensus        82 Fv~WLeea   89 (125)
                      ||+||++|
T Consensus       161 Fi~WL~eA  168 (168)
T 3d3m_A          161 WLTWLETA  168 (168)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhcC
Confidence            99999987

>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}

Probab=99.75  E-value=6.9e-19  Score=143.11  Aligned_cols=84  Identities=21%  Similarity=0.442  Sum_probs=68.9

Q ss_pred             CcccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHHH
Q psy15550          2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAEP   81 (125)
Q Consensus         2 pll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~~   81 (125)
                      |+|++|++++.+.|+++|+|+|.+|. ......+.++.|++.||+.|||+||+|++||++.++.+  . ...++|++++|
T Consensus       281 ~ll~~~~~~~~~~q~~~L~alq~~~~-~~~~~~~~l~~il~~LYd~DileEe~il~W~~~~~~~~--~-~k~~~~~~~~~  356 (364)
T 3l6a_A          281 PVMQKFLHDHVDLQVSALYALQVHCY-NSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEF--P-GKGKALFQVNQ  356 (364)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCTTHHHHHHHHHHHTTSSCHHHHHHHHHCCCCSS--T-THHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCccc--c-hHHHHHHHHHH
Confidence            78999999864569999999999985 33222367799999999999999999999998865432  2 24578999999


Q ss_pred             HHHHHccc
Q psy15550         82 FIKWLREA   89 (125)
Q Consensus        82 Fv~WLeea   89 (125)
                      ||+||++|
T Consensus       357 Fi~WL~eA  364 (364)
T 3l6a_A          357 WLTWLETA  364 (364)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99999987

>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14

Probab=99.23  E-value=2.7e-12  Score=102.80  Aligned_cols=58  Identities=12%  Similarity=0.335  Sum_probs=52.2

Q ss_pred             CcccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHHHhh
Q psy15550          2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEK   61 (125)
Q Consensus         2 pll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~   61 (125)
                      |+|++|+++ .+.|+++|+|+|.+| +++....+.|..|++.||+.|||+||+|++||++
T Consensus       277 pll~~~~~~-~~~ql~~L~alQ~~~-~~~~~~~~~l~~~~~~LYd~dVi~Eeail~W~~~  334 (339)
T 1ug3_A          277 KLLQKYLCD-EQKELQALYALQALV-VTLEQPPNLLRMFFDALYDEDVVKEDAFYSWESS  334 (339)
T ss_dssp             HHHHHHCCS-HHHHHHHHHHHHHHH-HHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHTC-
T ss_pred             HHHHHHcCC-cHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHhCcchhhHHHHHHHHhc
Confidence            789999976 599999999999998 5666667899999999999999999999999976

>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*

Probab=84.32  E-value=0.48  Score=25.24  Aligned_cols=13  Identities=31%  Similarity=0.828  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHccc
Q psy15550         77 SRAEPFIKWLREA   89 (125)
Q Consensus        77 ~~~~~Fv~WLeea   89 (125)
                      ++++.||+||.+.
T Consensus         9 ~aakdFv~WL~ng   21 (31)
T 3c5t_B            9 EAVRLFIEWLKNG   21 (31)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhC
Confidence            5788999999864

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=82.37  E-value=2.6  Score=30.08  Aligned_cols=11  Identities=0%  Similarity=-0.139  Sum_probs=4.8

Q ss_pred             cccchhHHHHH
Q psy15550         48 DILEEKVLLEW   58 (125)
Q Consensus        48 DIleEeaIl~W   58 (125)
                      +-+..++--.|
T Consensus       120 ~P~n~~aa~~~  130 (169)
T 1ayz_A          120 SPANVEAATLF  130 (169)
T ss_dssp             SCSSHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            34444544333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	125
d1paqa_	161	a.118.1.14 (A:) Translation initiation factor eIF-	5e-13
d1ug3a2	127	a.118.1.14 (A:1438-1564) Eukaryotic initiation fac	7e-06

>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 161

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Translation initiation factor eIF-2b epsilon
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.9 bits (145), Expect = 5e-13
 Identities = 17/85 (20%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 6   RFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKK 65
           R   ++ +    +   +E+++    +K   ++   L   YD DI+EE V+ +W +  S  
Sbjct: 81  RQAFDEEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVS-- 138

Query: 66  YVSKELSAEIRSRAEPFIKWLREAE 90
             +     E++     +++WL+ A+
Sbjct: 139 --TDPRYDEVKKLTVKWVEWLQNAD 161

>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 7e-06
 Identities = 8/57 (14%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 2   PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEW 58
               ++  ++ + +   L  + Q + +  E+  +++       YD D+++E     W
Sbjct: 73  KLLQKYLCDE-QKELQALYAL-QALVVTLEQPPNLLRMFFDALYDEDVVKEDAFYSW 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	125
d1paqa_	161	Translation initiation factor eIF-2b epsilon {Bake	99.86
d1ug3a2	127	Eukaryotic initiation factor eIF4G {Human (Homo sa	99.41

>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Translation initiation factor eIF-2b epsilon
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.7e-22  Score=145.94  Aligned_cols=84  Identities=24%  Similarity=0.370  Sum_probs=73.8

Q ss_pred             CcccccccCchHHHHHHHHHHHHHHHhh-HHHHHhhHHHHHHHHhhhcccchhHHHHHHhhcccccccHHHHHHHHHHHH
Q psy15550          2 PQCPRFTHEDIKAQRYLLNGIEQVIALH-KEKLLSMVPGILKLFYDYDILEEKVLLEWAEKTSKKYVSKELSAEIRSRAE   80 (125)
Q Consensus         2 pll~~f~~~~~~~q~~~L~ale~~~~~~-~~~~~~~f~~IL~~LYd~DIleEeaIl~W~~~~~~~~~~~e~~~~~r~~~~   80 (125)
                      |+|++|+++. ..|+++|.++|.+|+.. +|..++.|++||+.||+.|||+||+|++||+++++.    +...+++++++
T Consensus        77 ~ll~~~~~~~-~~q~~~L~~lq~~c~~~~~~~~~~~~~~il~~lY~~dii~Ed~i~~W~~~~~~~----~~~~~~~~~~~  151 (161)
T d1paqa_          77 LLFKRQAFDE-EEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTD----PRYDEVKKLTV  151 (161)
T ss_dssp             GGGGGTCCSH-HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHTCCCC----GGGHHHHHHHH
T ss_pred             HHHHHHcCCc-HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHhhchhcHHHHHHHHHcCCCc----hHHHHHHHHHH
Confidence            8999999975 99999999999999643 466778999999999999999999999999876643    24678899999


Q ss_pred             HHHHHHcccc
Q psy15550         81 PFIKWLREAE   90 (125)
Q Consensus        81 ~Fv~WLeeae   90 (125)
                      |||+||++||
T Consensus       152 ~fv~WL~~ae  161 (161)
T d1paqa_         152 KWVEWLQNAD  161 (161)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHhCC
Confidence            9999999986

>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.1e-14  Score=97.99  Aligned_cols=55  Identities=13%  Similarity=0.384  Sum_probs=50.6

Q ss_pred             CcccccccCchHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHhhhcccchhHHHHH
Q psy15550          2 PQCPRFTHEDIKAQRYLLNGIEQVIALHKEKLLSMVPGILKLFYDYDILEEKVLLEW   58 (125)
Q Consensus         2 pll~~f~~~~~~~q~~~L~ale~~~~~~~~~~~~~f~~IL~~LYd~DIleEeaIl~W   58 (125)
                      |+|++|++++ +.|+++|+++|.+| .+.+...+.|+.|++.||+.|||+||+|++|
T Consensus        73 ~ll~~~~~~~-~~ql~~L~~lQ~~~-~~~~~~~~~~~~i~~~LYd~dvi~Ee~i~~W  127 (127)
T d1ug3a2          73 KLLQKYLCDE-QKELQALYALQALV-VTLEQPPNLLRMFFDALYDEDVVKEDAFYSW  127 (127)
T ss_dssp             HHHHHHCCSH-HHHHHHHHHHHHHH-HHTTCCTTHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred             HHHHHHhCCc-HHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHhccccccHHhhccC
Confidence            7899999975 89999999999998 5666667899999999999999999999999