Psyllid ID: psy15596

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MGLKHITSHVMGSRDWHTSHAFKHTLFVKGLGLLVSMGISRREWMNGDDQKANESYAEKVHFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKERDRLQAMMLHLHMTKQQSQTVEQEKQTPKV
Secondary Structure (PSIPRED)
cccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEccccccccccccHHHHHHHHHHHcccccccccccccHHcccccccccccccccccccccccEccccccHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
mglkhitshvmgsrdwhtshAFKHTLFVKGLGLLVSMGIsrrewmngddqkanESYAEKVHFLFghgvckwpgceavCEDVQAFYKHLNkehnlddrSTAQARVQMQVVSQLELQLQKERDRLQAMMLHLHMtkqqsqtveqekqtpkv
Flexible Loop (DISEMBL)
mglkhitshvmgsrdWHTSHAFKHTLFVKGLGLLVSMGISRREWMNGDDQKANESYAEKVHFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKERDRLQAMMLHLHmtkqqsqtveqekqtpkv
Low Complexity Region (SEG)
MGLKHITSHVMGSRDWHTSHAFKHTLFVKGLGLLVSMGISRREWMNGDDQKANESYAEKVHFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKERDRLQAMMLHLHMTKQQSQTVEQEKQTPKV
Disordered region (IsUnstruct)
*********VMGSRDWHTSHAFKHTLFVKGLGLLVSMGISRREWMNGDD**ANESYAEKVHFLFGHGVCKWPGCEAVCEDVQAFYKHLNK***********************************************************
Disordered Region (DISOPRED)
******T********************************************************FGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKERDRLQAM***********************
Disordered Region (DISEMBL)
************SRDWHTSHAFKHTLFVKGLGLLVSMGISRREWMNGDDQKANESYAEKVHFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKERDRLQAMMLHLHM*****************
Disordered Region (DISPRO)
**********MGSRDWHTSHAFKHTLFVKGLGLLVSM*********************KVHFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKERDRLQAMML*********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLKHITSHVMGSRDWHTSHAFKHTLFVKGLGLLVSMGISRREWMNGDDQKANESYAEKVHFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVxxxxxxxxxxxxxxxxxxxxxLHMTKQQSQTVEQEKQTPKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
A4IFD2	674	Forkhead box protein P1 O	yes	N/A	0.550	0.121	0.719	2e-31
Q9H334	677	Forkhead box protein P1 O	yes	N/A	0.550	0.121	0.707	7e-31
Q58NQ4	686	Forkhead box protein P1 O	yes	N/A	0.550	0.119	0.707	7e-31
Q498D1	711	Forkhead box protein P1 O	yes	N/A	0.550	0.115	0.695	2e-30
P58462	705	Forkhead box protein P1 O	yes	N/A	0.550	0.116	0.695	3e-30
P0CF24	710	Forkhead box protein P2 O	no	N/A	0.483	0.101	0.777	5e-30
Q8MJ98	713	Forkhead box protein P2 O	N/A	N/A	0.483	0.100	0.777	5e-30
O15409	715	Forkhead box protein P2 O	no	N/A	0.483	0.100	0.777	5e-30
Q8MJA0	716	Forkhead box protein P2 O	no	N/A	0.483	0.100	0.777	5e-30
Q8HZ00	716	Forkhead box protein P2 O	N/A	N/A	0.483	0.100	0.777	5e-30

>sp|A4IFD2|FOXP1_BOVIN Forkhead box protein P1 OS=Bos taurus GN=FOXP1 PE=2 SV=1

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/82 (71%), Positives = 67/82 (81%)

Query: 61  HFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKER 120
           H L+GHGVCKWPGCEAVCED Q+F KHLN EH LDDRSTAQ RVQMQVV QLELQL K++
Sbjct: 298 HPLYGHGVCKWPGCEAVCEDFQSFLKHLNSEHALDDRSTAQCRVQMQVVQQLELQLAKDK 357

Query: 121 DRLQAMMLHLHMTKQQSQTVEQ 142
           +RLQAMM HLH+   + +T  Q
Sbjct: 358 ERLQAMMTHLHVKSTEPKTAPQ 379

Transcriptional repressor that plays an important role in the specification and differentiation of lung epithelium. Can act with CTBP1 to synergistically repress transcription but CTPBP1 is not essential. Essential transcriptional regulator of B-cell development.
Bos taurus (taxid: 9913)

>sp|Q9H334|FOXP1_HUMAN Forkhead box protein P1 OS=Homo sapiens GN=FOXP1 PE=1 SV=1

 Score =  132 bits (332), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 58/82 (70%), Positives = 66/82 (80%)

Query: 61  HFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKER 120
           H L+GHGVCKWPGCEAVCED Q+F KHLN EH LDDRSTAQ RVQMQVV QLELQL K++
Sbjct: 300 HPLYGHGVCKWPGCEAVCEDFQSFLKHLNSEHALDDRSTAQCRVQMQVVQQLELQLAKDK 359

Query: 121 DRLQAMMLHLHMTKQQSQTVEQ 142
           +RLQAMM HLH+   + +   Q
Sbjct: 360 ERLQAMMTHLHVKSTEPKAAPQ 381

Transcriptional repressor. It plays an important role in the specification and differentiation of lung epithelium. Can act with CTBP1 to synergistically repress transcription but CTPBP1 is not essential. Essential transcriptional regulator of B-cell development.

Homo sapiens (taxid: 9606)

>sp|Q58NQ4|FOXP1_CHICK Forkhead box protein P1 OS=Gallus gallus GN=FOXP1 PE=2 SV=1

 Score =  132 bits (332), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 58/82 (70%), Positives = 66/82 (80%)

Query: 61  HFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKER 120
           H L+GHGVCKWPGCEAVCED Q+F KHLN EH LDDRSTAQ RVQMQVV QLELQL K++
Sbjct: 309 HPLYGHGVCKWPGCEAVCEDFQSFLKHLNSEHALDDRSTAQCRVQMQVVQQLELQLAKDK 368

Query: 121 DRLQAMMLHLHMTKQQSQTVEQ 142
           +RLQAMM HLH+   + +   Q
Sbjct: 369 ERLQAMMTHLHVKSTEPKATPQ 390

Transcriptional repressor.

Gallus gallus (taxid: 9031)

>sp|Q498D1|FOXP1_RAT Forkhead box protein P1 OS=Rattus norvegicus GN=Foxp1 PE=2 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 65/82 (79%)

Query: 61  HFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKER 120
           H L+GHGVCKWPGCEAVC+D  AF KHLN EH LDDRSTAQ RVQMQVV QLELQL K++
Sbjct: 334 HPLYGHGVCKWPGCEAVCDDFPAFLKHLNSEHALDDRSTAQCRVQMQVVQQLELQLAKDK 393

Query: 121 DRLQAMMLHLHMTKQQSQTVEQ 142
           +RLQAMM HLH+   + +   Q
Sbjct: 394 ERLQAMMTHLHVKSTEPKAAPQ 415

Transcriptional repressor that plays an important role in the specification and differentiation of lung epithelium. Can act with CTBP1 to synergistically repress transcription but CTPBP1 is not essential. Essential transcriptional regulator of B-cell development.

Rattus norvegicus (taxid: 10116)

>sp|P58462|FOXP1_MOUSE Forkhead box protein P1 OS=Mus musculus GN=Foxp1 PE=1 SV=1

 Score =  130 bits (327), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 65/82 (79%)

Query: 61  HFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKER 120
           H L+GHGVCKWPGCEAVC+D  AF KHLN EH LDDRSTAQ RVQMQVV QLELQL K++
Sbjct: 328 HPLYGHGVCKWPGCEAVCDDFPAFLKHLNSEHALDDRSTAQCRVQMQVVQQLELQLAKDK 387

Query: 121 DRLQAMMLHLHMTKQQSQTVEQ 142
           +RLQAMM HLH+   + +   Q
Sbjct: 388 ERLQAMMTHLHVKSTEPKAAPQ 409

Transcriptional repressor that plays an important role in the specification and differentiation of lung epithelium. Can act with CTBP1 to synergistically repress transcription but CTPBP1 is not essential. Essential transcriptional regulator of B-cell development.

Mus musculus (taxid: 10090)

>sp|P0CF24|FOXP2_RAT Forkhead box protein P2 OS=Rattus norvegicus GN=Foxp2 PE=3 SV=1

 Score =  129 bits (325), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 56/72 (77%), Positives = 61/72 (84%)

Query: 61  HFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKER 120
           H L+GHGVCKWPGCE++CED   F KHLN EH LDDRSTAQ RVQMQVV QLE+QL KER
Sbjct: 335 HTLYGHGVCKWPGCESICEDFGQFLKHLNNEHALDDRSTAQCRVQMQVVQQLEIQLSKER 394

Query: 121 DRLQAMMLHLHM 132
           +RLQAMM HLHM
Sbjct: 395 ERLQAMMTHLHM 406

Transcriptional repressor that may play a role in the specification and differentiation of lung epithelium. May also play a role in developing neural, gastrointestinal and cardiovascular tissues. Can act with CTBP1 to synergistically repress transcription but CTPBP1 is not essential.

Rattus norvegicus (taxid: 10116)

>sp|Q8MJ98|FOXP2_PONPY Forkhead box protein P2 OS=Pongo pygmaeus GN=FOXP2 PE=2 SV=3

 Score =  129 bits (325), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 56/72 (77%), Positives = 61/72 (84%)

Query: 61  HFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKER 120
           H L+GHGVCKWPGCE++CED   F KHLN EH LDDRSTAQ RVQMQVV QLE+QL KER
Sbjct: 338 HTLYGHGVCKWPGCESICEDFGQFLKHLNNEHALDDRSTAQCRVQMQVVQQLEIQLSKER 397

Query: 121 DRLQAMMLHLHM 132
           +RLQAMM HLHM
Sbjct: 398 ERLQAMMTHLHM 409

Transcriptional repressor that may play a role in the specification and differentiation of lung epithelium. May also play a role in developing neural, gastrointestinal and cardiovascular tissues. Can act with CTBP1 to synergistically repress transcription but CTPBP1 is not essential.

Pongo pygmaeus (taxid: 9600)

>sp|O15409|FOXP2_HUMAN Forkhead box protein P2 OS=Homo sapiens GN=FOXP2 PE=1 SV=2

 Score =  129 bits (325), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 56/72 (77%), Positives = 61/72 (84%)

Query: 61  HFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKER 120
           H L+GHGVCKWPGCE++CED   F KHLN EH LDDRSTAQ RVQMQVV QLE+QL KER
Sbjct: 340 HTLYGHGVCKWPGCESICEDFGQFLKHLNNEHALDDRSTAQCRVQMQVVQQLEIQLSKER 399

Query: 121 DRLQAMMLHLHM 132
           +RLQAMM HLHM
Sbjct: 400 ERLQAMMTHLHM 411

Transcriptional repressor that may play a role in the specification and differentiation of lung epithelium. May also play a role in developing neural, gastrointestinal and cardiovascular tissues. Can act with CTBP1 to synergistically repress transcription but CTPBP1 is not essential. Involved in neural mechanisms mediating the development of speech and language.

Homo sapiens (taxid: 9606)

>sp|Q8MJA0|FOXP2_PANTR Forkhead box protein P2 OS=Pan troglodytes GN=FOXP2 PE=2 SV=1

 Score =  129 bits (325), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 56/72 (77%), Positives = 61/72 (84%)

Query: 61  HFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKER 120
           H L+GHGVCKWPGCE++CED   F KHLN EH LDDRSTAQ RVQMQVV QLE+QL KER
Sbjct: 341 HTLYGHGVCKWPGCESICEDFGQFLKHLNNEHALDDRSTAQCRVQMQVVQQLEIQLSKER 400

Query: 121 DRLQAMMLHLHM 132
           +RLQAMM HLHM
Sbjct: 401 ERLQAMMTHLHM 412

Transcriptional repressor that may play a role in the specification and differentiation of lung epithelium. May also play a role in developing neural, gastrointestinal and cardiovascular tissues. Can act with CTBP1 to synergistically repress transcription but CTPBP1 is not essential.

Pan troglodytes (taxid: 9598)

>sp|Q8HZ00|FOXP2_PANPA Forkhead box protein P2 OS=Pan paniscus GN=FOXP2 PE=2 SV=1

 Score =  129 bits (325), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 56/72 (77%), Positives = 61/72 (84%)

Query: 61  HFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKER 120
           H L+GHGVCKWPGCE++CED   F KHLN EH LDDRSTAQ RVQMQVV QLE+QL KER
Sbjct: 341 HTLYGHGVCKWPGCESICEDFGQFLKHLNNEHALDDRSTAQCRVQMQVVQQLEIQLSKER 400

Query: 121 DRLQAMMLHLHM 132
           +RLQAMM HLHM
Sbjct: 401 ERLQAMMTHLHM 412

Transcriptional repressor that may play a role in the specification and differentiation of lung epithelium. May also play a role in developing neural, gastrointestinal and cardiovascular tissues. Can act with CTBP1 to synergistically repress transcription but CTPBP1 is not essential.

Pan paniscus (taxid: 9597)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
307212692	726	Forkhead box protein P4 [Harpegnathos sa	0.697	0.143	0.703	2e-37
307170460	606	Forkhead box protein P4 [Camponotus flor	0.697	0.171	0.694	3e-37
332019489	726	Forkhead box protein P1 [Acromyrmex echi	0.697	0.143	0.694	4e-37
383857439	727	PREDICTED: forkhead box protein P2-like	0.691	0.141	0.7	2e-36
340723397	736	PREDICTED: hypothetical protein LOC10065	0.677	0.137	0.703	1e-35
322796726	707	hypothetical protein SINV_10119 [Solenop	0.711	0.149	0.681	3e-35
157279729	735	FoxP protein [Apis mellifera] gi|1561512	0.677	0.137	0.694	4e-35
345487157	915	PREDICTED: hypothetical protein LOC10011	0.697	0.113	0.688	6e-35
345487153	910	PREDICTED: hypothetical protein LOC10011	0.697	0.114	0.688	6e-35
380017465	765	PREDICTED: uncharacterized protein LOC10	0.691	0.134	0.690	2e-34

>gi|307212692|gb|EFN88383.1| Forkhead box protein P4 [Harpegnathos saltator]

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/108 (70%), Positives = 85/108 (78%), Gaps = 4/108 (3%)

Query: 32  GLLVSMGISRREWMNG----DDQKANESYAEKVHFLFGHGVCKWPGCEAVCEDVQAFYKH 87
           GLL S+  SRR  +NG    D++  + S  +KVH L+GHGVCKWPGCE +CED QAF KH
Sbjct: 247 GLLNSIASSRRSEVNGTTPLDEKPLDASCNDKVHPLYGHGVCKWPGCEVICEDYQAFLKH 306

Query: 88  LNKEHNLDDRSTAQARVQMQVVSQLELQLQKERDRLQAMMLHLHMTKQ 135
           LN EH LDDRSTAQARVQMQVVSQLE+QLQKERDRL AMM HLHM KQ
Sbjct: 307 LNTEHTLDDRSTAQARVQMQVVSQLEIQLQKERDRLGAMMHHLHMAKQ 354

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170460|gb|EFN62730.1| Forkhead box protein P4 [Camponotus floridanus]

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 85/108 (78%), Gaps = 4/108 (3%)

Query: 32  GLLVSMGISRREWMNG----DDQKANESYAEKVHFLFGHGVCKWPGCEAVCEDVQAFYKH 87
           G+L S+  SRR  +NG    D++  + S  +KVH L+GHGVCKWPGCE +CED QAF KH
Sbjct: 246 GILNSIASSRRSEVNGTTPMDEKPLDASCNDKVHPLYGHGVCKWPGCEVICEDYQAFLKH 305

Query: 88  LNKEHNLDDRSTAQARVQMQVVSQLELQLQKERDRLQAMMLHLHMTKQ 135
           LN EH LDDRSTAQARVQMQVVSQLE+QLQKERDRL AMM HLHM KQ
Sbjct: 306 LNTEHTLDDRSTAQARVQMQVVSQLEIQLQKERDRLGAMMHHLHMAKQ 353

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019489|gb|EGI59968.1| Forkhead box protein P1 [Acromyrmex echinatior]

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 85/108 (78%), Gaps = 4/108 (3%)

Query: 32  GLLVSMGISRREWMNG----DDQKANESYAEKVHFLFGHGVCKWPGCEAVCEDVQAFYKH 87
           G+L S+  SRR  +NG    D++  + S  +KVH L+GHGVCKWPGCE +CED QAF KH
Sbjct: 248 GILNSIASSRRSEVNGTTPMDEKPLDASCNDKVHPLYGHGVCKWPGCEVICEDYQAFLKH 307

Query: 88  LNKEHNLDDRSTAQARVQMQVVSQLELQLQKERDRLQAMMLHLHMTKQ 135
           LN EH LDDRSTAQARVQMQVVSQLE+QLQKERDRL AMM HLHM KQ
Sbjct: 308 LNTEHTLDDRSTAQARVQMQVVSQLEIQLQKERDRLGAMMHHLHMAKQ 355

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857439|ref|XP_003704212.1| PREDICTED: forkhead box protein P2-like [Megachile rotundata]

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 84/110 (76%), Gaps = 7/110 (6%)

Query: 30  GLGLLVSMGISRREWMNG----DDQKANESYAEKVHFLFGHGVCKWPGCEAVCEDVQAFY 85
           G GL VS   SRR  MNG    D++  + S  +K H L+GHGVCKWPGCE +CED QAF 
Sbjct: 243 GAGLNVS---SRRSEMNGTTPLDEKPLDVSSNDKAHPLYGHGVCKWPGCEVICEDYQAFL 299

Query: 86  KHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKERDRLQAMMLHLHMTKQ 135
           KHLN EH LDDRSTAQARVQMQVVSQLE+QLQKERDRL AMM HLHM KQ
Sbjct: 300 KHLNTEHTLDDRSTAQARVQMQVVSQLEIQLQKERDRLTAMMHHLHMAKQ 349

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723397|ref|XP_003400076.1| PREDICTED: hypothetical protein LOC100651096 [Bombus terrestris] gi|350405998|ref|XP_003487622.1| PREDICTED: hypothetical protein LOC100746295 [Bombus impatiens]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/108 (70%), Positives = 84/108 (77%), Gaps = 7/108 (6%)

Query: 32  GLLVSMGISRREWMNG----DDQKANESYAEKVHFLFGHGVCKWPGCEAVCEDVQAFYKH 87
           GL VS   SRR  MNG    D++  + S  +KVH L+GHGVCKWPGCE +CED QAF KH
Sbjct: 245 GLNVS---SRRSEMNGTTPLDEKPLDVSSNDKVHPLYGHGVCKWPGCEVICEDYQAFLKH 301

Query: 88  LNKEHNLDDRSTAQARVQMQVVSQLELQLQKERDRLQAMMLHLHMTKQ 135
           LN EH LDDRSTAQARVQMQVVSQLE+QLQKERDRL AMM HLH+ KQ
Sbjct: 302 LNTEHTLDDRSTAQARVQMQVVSQLEIQLQKERDRLTAMMHHLHVAKQ 349

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796726|gb|EFZ19159.1| hypothetical protein SINV_10119 [Solenopsis invicta]

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 75/110 (68%), Positives = 86/110 (78%), Gaps = 4/110 (3%)

Query: 32  GLLVSMGISRREWMNG----DDQKANESYAEKVHFLFGHGVCKWPGCEAVCEDVQAFYKH 87
           G+L S+  SRR  +NG    D++  + S  +KVH L+GHGVCKWPGCE +CED QAF KH
Sbjct: 346 GILNSIASSRRSEVNGTTPMDEKPLDASCNDKVHPLYGHGVCKWPGCEVICEDYQAFLKH 405

Query: 88  LNKEHNLDDRSTAQARVQMQVVSQLELQLQKERDRLQAMMLHLHMTKQQS 137
           LN EH LDDRSTAQARVQMQVVSQLE+QLQKERDRL AMM HLHM KQ +
Sbjct: 406 LNTEHTLDDRSTAQARVQMQVVSQLEIQLQKERDRLGAMMHHLHMAKQMA 455

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157279729|ref|NP_001098419.1| FoxP protein [Apis mellifera] gi|156151280|dbj|BAF75928.1| FoxP protein [Apis mellifera]

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 84/108 (77%), Gaps = 7/108 (6%)

Query: 32  GLLVSMGISRREWMNG----DDQKANESYAEKVHFLFGHGVCKWPGCEAVCEDVQAFYKH 87
           GL VS   SRR  MNG    D++  + S  +KVH L+GHGVCKWPGCE +CED QAF KH
Sbjct: 245 GLNVS---SRRSDMNGTTPLDEKPLDVSSNDKVHPLYGHGVCKWPGCEVICEDYQAFLKH 301

Query: 88  LNKEHNLDDRSTAQARVQMQVVSQLELQLQKERDRLQAMMLHLHMTKQ 135
           LN EH LDDRSTAQARV+MQVVSQLE+QLQKERDRL AMM HLH+ KQ
Sbjct: 302 LNTEHTLDDRSTAQARVRMQVVSQLEIQLQKERDRLTAMMHHLHVAKQ 349

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487157|ref|XP_003425636.1| PREDICTED: hypothetical protein LOC100115252 isoform 3 [Nasonia vitripennis]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 85/109 (77%), Gaps = 5/109 (4%)

Query: 32  GLLVSMGISRREWMNG----DDQKANESYAEKV-HFLFGHGVCKWPGCEAVCEDVQAFYK 86
           GLL S+  +RR  +NG    D++  + S  EK+ H L+GHGVCKWPGCE VC+D QAF K
Sbjct: 406 GLLNSLVSNRRSEINGTTQLDEKPLDASCNEKLQHPLYGHGVCKWPGCETVCDDYQAFLK 465

Query: 87  HLNKEHNLDDRSTAQARVQMQVVSQLELQLQKERDRLQAMMLHLHMTKQ 135
           HLN EH LDDRSTAQARVQMQVVSQLE+QLQKERDRL AMM HLHM KQ
Sbjct: 466 HLNTEHTLDDRSTAQARVQMQVVSQLEIQLQKERDRLNAMMHHLHMAKQ 514

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487153|ref|XP_001600027.2| PREDICTED: hypothetical protein LOC100115252 isoform 1 [Nasonia vitripennis]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 85/109 (77%), Gaps = 5/109 (4%)

Query: 32  GLLVSMGISRREWMNG----DDQKANESYAEKV-HFLFGHGVCKWPGCEAVCEDVQAFYK 86
           GLL S+  +RR  +NG    D++  + S  EK+ H L+GHGVCKWPGCE VC+D QAF K
Sbjct: 401 GLLNSLVSNRRSEINGTTQLDEKPLDASCNEKLQHPLYGHGVCKWPGCETVCDDYQAFLK 460

Query: 87  HLNKEHNLDDRSTAQARVQMQVVSQLELQLQKERDRLQAMMLHLHMTKQ 135
           HLN EH LDDRSTAQARVQMQVVSQLE+QLQKERDRL AMM HLHM KQ
Sbjct: 461 HLNTEHTLDDRSTAQARVQMQVVSQLEIQLQKERDRLNAMMHHLHMAKQ 509

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017465|ref|XP_003692676.1| PREDICTED: uncharacterized protein LOC100871453 [Apis florea]

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/110 (69%), Positives = 85/110 (77%), Gaps = 7/110 (6%)

Query: 32  GLLVSMGISRREWMNG----DDQKANESYAEKVHFLFGHGVCKWPGCEAVCEDVQAFYKH 87
           GL VS   SRR  MNG    D++  + S  +KVH L+GHGVCKWPGCE +CED QAF KH
Sbjct: 375 GLNVS---SRRSDMNGTTPLDEKPLDVSSNDKVHPLYGHGVCKWPGCEVICEDYQAFLKH 431

Query: 88  LNKEHNLDDRSTAQARVQMQVVSQLELQLQKERDRLQAMMLHLHMTKQQS 137
           LN EH LDDRSTAQARVQMQVVSQLE+QLQKERDRL AMM HLH+ KQ +
Sbjct: 432 LNTEHTLDDRSTAQARVQMQVVSQLEIQLQKERDRLTAMMHHLHVAKQMA 481

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
UNIPROTKB|I3LSV4	455	FOXP1 "Uncharacterized protein	0.550	0.180	0.719	3.4e-29
UNIPROTKB|A4IFD2	674	FOXP1 "Forkhead box protein P1	0.550	0.121	0.719	2.4e-28
UNIPROTKB|E9PHJ5	382	FOXP2 "Forkhead box protein P2	0.812	0.316	0.529	3.1e-28
UNIPROTKB|Q8N6B5	456	FOXP2 "Forkhead box P2, isofor	0.812	0.265	0.529	3.1e-28
UNIPROTKB|F1LTV0	188	Foxp1 "Forkhead box protein P1	0.577	0.457	0.674	3.1e-28
UNIPROTKB|G5E965	566	FOXP1 "Forkhead box protein P1	0.550	0.144	0.707	4.6e-28
UNIPROTKB|H0Y882	573	FOXP1 "Forkhead box protein P1	0.550	0.143	0.707	4.9e-28
UNIPROTKB|F1NR83	630	FOXP1 "Forkhead box protein P1	0.604	0.142	0.648	5.3e-28
UNIPROTKB|C9J0F0	613	FOXP1 "Forkhead box protein P1	0.550	0.133	0.707	6.3e-28
UNIPROTKB|E1C359	685	FOXP1 "Forkhead box protein P1	0.604	0.131	0.648	6.8e-28

UNIPROTKB|I3LSV4 FOXP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 59/82 (71%), Positives = 67/82 (81%)

Query:    61 HFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKER 120
             H L+GHGVCKWPGCEAVCED Q+F KHLN EH LDDRSTAQ RVQMQVV QLELQL K++
Sbjct:    78 HPLYGHGVCKWPGCEAVCEDFQSFLKHLNSEHALDDRSTAQCRVQMQVVQQLELQLAKDK 137

Query:   121 DRLQAMMLHLHMTKQQSQTVEQ 142
             +RLQAMM HLH+   + +T  Q
Sbjct:   138 ERLQAMMTHLHVKSTEPKTAPQ 159

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|A4IFD2 FOXP1 "Forkhead box protein P1" [Bos taurus (taxid:9913)]

 Score = 324 (119.1 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 59/82 (71%), Positives = 67/82 (81%)

Query:    61 HFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKER 120
             H L+GHGVCKWPGCEAVCED Q+F KHLN EH LDDRSTAQ RVQMQVV QLELQL K++
Sbjct:   298 HPLYGHGVCKWPGCEAVCEDFQSFLKHLNSEHALDDRSTAQCRVQMQVVQQLELQLAKDK 357

Query:   121 DRLQAMMLHLHMTKQQSQTVEQ 142
             +RLQAMM HLH+   + +T  Q
Sbjct:   358 ERLQAMMTHLHVKSTEPKTAPQ 379

GO:0060501 "positive regulation of epithelial cell proliferation involved in lung morphogenesis" evidence=IBA

GO:0055007 "cardiac muscle cell differentiation" evidence=IBA

GO:0051090 "regulation of sequence-specific DNA binding transcription factor activity" evidence=IBA

GO:0048745 "smooth muscle tissue development" evidence=IBA

GO:0046982 "protein heterodimerization activity" evidence=IBA

GO:0042803 "protein homodimerization activity" evidence=IBA

GO:0033152 "immunoglobulin V(D)J recombination" evidence=IBA

GO:0009790 "embryo development" evidence=IBA

GO:0008301 "DNA binding, bending" evidence=IBA

GO:0008134 "transcription factor binding" evidence=IBA

GO:0007519 "skeletal muscle tissue development" evidence=IBA

GO:0007389 "pattern specification process" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005667 "transcription factor complex" evidence=IBA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IBA

GO:0003690 "double-stranded DNA binding" evidence=IBA

GO:0003682 "chromatin binding" evidence=IBA

GO:0002639 "positive regulation of immunoglobulin production" evidence=IBA

GO:0002329 "pre-B cell differentiation" evidence=IBA

GO:0002053 "positive regulation of mesenchymal cell proliferation" evidence=IBA

GO:2000727 "positive regulation of cardiac muscle cell differentiation" evidence=IEA

GO:0060043 "regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0021517 "ventral spinal cord development" evidence=IEA

GO:0008045 "motor neuron axon guidance" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E9PHJ5 FOXP2 "Forkhead box protein P2" [Homo sapiens (taxid:9606)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 71/134 (52%), Positives = 84/134 (62%)

Query:     2 GLKHITSHVMGSRDWHTSHA---FKHTLFVKGLGLLVSMGISRREWMNGDDQKANESYAE 58
             GL   T++   +   +TS A     H   V G   ++S   +RR     D     E+ A 
Sbjct:   213 GLDLTTNNSSSTTSSNTSKASPPITHHSIVNGQSSVLS---ARR-----DSSSHEETGAS 264

Query:    59 KVHFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQK 118
               H L+GHGVCKWPGCE++CED   F KHLN EH LDDRSTAQ RVQMQVV QLE+QL K
Sbjct:   265 --HTLYGHGVCKWPGCESICEDFGQFLKHLNNEHALDDRSTAQCRVQMQVVQQLEIQLSK 322

Query:   119 ERDRLQAMMLHLHM 132
             ER+RLQAMM HLHM
Sbjct:   323 ERERLQAMMTHLHM 336

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q8N6B5 FOXP2 "Forkhead box P2, isoform CRA_d" [Homo sapiens (taxid:9606)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 71/134 (52%), Positives = 84/134 (62%)

Query:     2 GLKHITSHVMGSRDWHTSHA---FKHTLFVKGLGLLVSMGISRREWMNGDDQKANESYAE 58
             GL   T++   +   +TS A     H   V G   ++S   +RR     D     E+ A 
Sbjct:   312 GLDLTTNNSSSTTSSNTSKASPPITHHSIVNGQSSVLS---ARR-----DSSSHEETGAS 363

Query:    59 KVHFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQK 118
               H L+GHGVCKWPGCE++CED   F KHLN EH LDDRSTAQ RVQMQVV QLE+QL K
Sbjct:   364 --HTLYGHGVCKWPGCESICEDFGQFLKHLNNEHALDDRSTAQCRVQMQVVQQLEIQLSK 421

Query:   119 ERDRLQAMMLHLHM 132
             ER+RLQAMM HLHM
Sbjct:   422 ERERLQAMMTHLHM 435

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1LTV0 Foxp1 "Forkhead box protein P1" [Rattus norvegicus (taxid:10116)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 58/86 (67%), Positives = 66/86 (76%)

Query:    61 HFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKER 120
             H L+GHGVCKWPGCEAVC+D  AF KHLN EH LDDRSTAQ RVQMQVV QLELQL K++
Sbjct:    92 HPLYGHGVCKWPGCEAVCDDFPAFLKHLNSEHALDDRSTAQCRVQMQVVQQLELQLAKDK 151

Query:   121 DRLQAMMLHLHMTKQQSQTVEQEKQT 146
             +RLQAMM HLH+   + +   Q   T
Sbjct:   152 ERLQAMMTHLHVKSTEPKAAPQPVST 177

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|G5E965 FOXP1 "Forkhead box protein P1" [Homo sapiens (taxid:9606)]

 Score = 319 (117.4 bits), Expect = 4.6e-28, P = 4.6e-28
 Identities = 58/82 (70%), Positives = 66/82 (80%)

Query:    61 HFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKER 120
             H L+GHGVCKWPGCEAVCED Q+F KHLN EH LDDRSTAQ RVQMQVV QLELQL K++
Sbjct:   300 HPLYGHGVCKWPGCEAVCEDFQSFLKHLNSEHALDDRSTAQCRVQMQVVQQLELQLAKDK 359

Query:   121 DRLQAMMLHLHMTKQQSQTVEQ 142
             +RLQAMM HLH+   + +   Q
Sbjct:   360 ERLQAMMTHLHVKSTEPKAAPQ 381

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|H0Y882 FOXP1 "Forkhead box protein P1" [Homo sapiens (taxid:9606)]

 Score = 319 (117.4 bits), Expect = 4.9e-28, P = 4.9e-28
 Identities = 58/82 (70%), Positives = 66/82 (80%)

Query:    61 HFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKER 120
             H L+GHGVCKWPGCEAVCED Q+F KHLN EH LDDRSTAQ RVQMQVV QLELQL K++
Sbjct:   196 HPLYGHGVCKWPGCEAVCEDFQSFLKHLNSEHALDDRSTAQCRVQMQVVQQLELQLAKDK 255

Query:   121 DRLQAMMLHLHMTKQQSQTVEQ 142
             +RLQAMM HLH+   + +   Q
Sbjct:   256 ERLQAMMTHLHVKSTEPKAAPQ 277

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1NR83 FOXP1 "Forkhead box protein P1" [Gallus gallus (taxid:9031)]

 Score = 320 (117.7 bits), Expect = 5.3e-28, P = 5.3e-28
 Identities = 59/91 (64%), Positives = 71/91 (78%)

Query:    52 ANESYAEKVHFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQ 111
             ++E ++   H L+GHGVCKWPGCEAVCED Q+F KHLN EH LDDRSTAQ RVQMQVV Q
Sbjct:   245 SHEEHSHS-HPLYGHGVCKWPGCEAVCEDFQSFLKHLNSEHALDDRSTAQCRVQMQVVQQ 303

Query:   112 LELQLQKERDRLQAMMLHLHMTKQQSQTVEQ 142
             LELQL K+++RLQAMM HLH+   + +   Q
Sbjct:   304 LELQLAKDKERLQAMMTHLHVKSTEPKATPQ 334

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|C9J0F0 FOXP1 "Forkhead box protein P1" [Homo sapiens (taxid:9606)]

 Score = 319 (117.4 bits), Expect = 6.3e-28, P = 6.3e-28
 Identities = 58/82 (70%), Positives = 66/82 (80%)

Query:    61 HFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKER 120
             H L+GHGVCKWPGCEAVCED Q+F KHLN EH LDDRSTAQ RVQMQVV QLELQL K++
Sbjct:   300 HPLYGHGVCKWPGCEAVCEDFQSFLKHLNSEHALDDRSTAQCRVQMQVVQQLELQLAKDK 359

Query:   121 DRLQAMMLHLHMTKQQSQTVEQ 142
             +RLQAMM HLH+   + +   Q
Sbjct:   360 ERLQAMMTHLHVKSTEPKAAPQ 381

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|E1C359 FOXP1 "Forkhead box protein P1" [Gallus gallus (taxid:9031)]

 Score = 320 (117.7 bits), Expect = 6.8e-28, P = 6.8e-28
 Identities = 59/91 (64%), Positives = 71/91 (78%)

Query:    52 ANESYAEKVHFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQ 111
             ++E ++   H L+GHGVCKWPGCEAVCED Q+F KHLN EH LDDRSTAQ RVQMQVV Q
Sbjct:   300 SHEEHSHS-HPLYGHGVCKWPGCEAVCEDFQSFLKHLNSEHALDDRSTAQCRVQMQVVQQ 358

Query:   112 LELQLQKERDRLQAMMLHLHMTKQQSQTVEQ 142
             LELQL K+++RLQAMM HLH+   + +   Q
Sbjct:   359 LELQLAKDKERLQAMMTHLHVKSTEPKATPQ 389

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9H334	FOXP1_HUMAN	No assigned EC number	0.7073	0.5503	0.1211	yes	N/A
Q498D1	FOXP1_RAT	No assigned EC number	0.6951	0.5503	0.1153	yes	N/A
Q58NQ4	FOXP1_CHICK	No assigned EC number	0.7073	0.5503	0.1195	yes	N/A
A4IFD2	FOXP1_BOVIN	No assigned EC number	0.7195	0.5503	0.1216	yes	N/A
Q2LE08	FXP1B_DANRE	No assigned EC number	0.5922	0.6510	0.1471	yes	N/A
P58462	FOXP1_MOUSE	No assigned EC number	0.6951	0.5503	0.1163	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
KOG4385|consensus	581		100.0
KOG4385|consensus	581		96.98
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	89.6
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	88.5
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	85.4
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	84.44

>KOG4385|consensus

Probab=100.00  E-value=1.9e-41  Score=305.44  Aligned_cols=104  Identities=57%  Similarity=0.883  Sum_probs=94.3

Q ss_pred             CCCCccccCCCC----ccccccccccc---ccccccCccccCCCCCccccCHHHHHHHhhhhCCCCCchHHHHHHHHHHH
Q psy15596         37 MGISRREWMNGD----DQKANESYAEK---VHFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVV  109 (149)
Q Consensus        37 ~~~s~~~~~ng~----~~~~~~~~~~~---shpLy~hGvCkWPGCe~~~ed~~~FLkHLnseH~LDDrStAQcRVQmqVV  109 (149)
                      ...++|...||+    ..|+|++++++   +||||+||+|||||||++|||+++||||||+||+|||||+||||||||||
T Consensus       173 ~~~nph~~~n~q~~~~~~r~ds~~~~~~~~shPl~~hgvckwpgcE~~~ed~~~flKhln~eh~lddrstaQcrvQmQVv  252 (581)
T KOG4385|consen  173 KVSNPHKVENGQHSVSSPRRDSSSMEEHPSSHPLYAHGVCKWPGCEAVCEDFGSFLKHLNTEHALDDRSTAQCRVQMQVV  252 (581)
T ss_pred             cCCCcccccccccccccccchhhhhhcccccCCcccCCccCCCchhhhccchHHHHHhhccccccchhhhHHHHHHHHHH
Confidence            344558999999    57888888775   99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCcccCcch
Q psy15596        110 SQLELQLQKERDRLQAMMLHLHMTKQQSQTV  140 (149)
Q Consensus       110 qqLE~QL~kEkeRLqAMm~HL~m~~~~~~~~  140 (149)
                      |+||.||.||||||+|||+||+|+.....+.
T Consensus       253 qqlE~ql~ke~erlqamm~hl~~~~s~~k~~  283 (581)
T KOG4385|consen  253 QQLEIQLSKESERLQAMMAHLAMKPSEPKAS  283 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCCCccc
Confidence            9999999999999999999999977544443

>KOG4385|consensus

Probab=96.98  E-value=5.5e-05  Score=70.24  Aligned_cols=78  Identities=10%  Similarity=0.028  Sum_probs=71.1

Q ss_pred             ccccccccccCccccCCCCCccccCHHHHHHHhhhhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q psy15596         56 YAEKVHFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKERDRLQAMMLHLHMTKQ  135 (149)
Q Consensus        56 ~~~~shpLy~hGvCkWPGCe~~~ed~~~FLkHLnseH~LDDrStAQcRVQmqVVqqLE~QL~kEkeRLqAMm~HL~m~~~  135 (149)
                      +|.+.+-||.+|+|.||+|+. |.+-..|..|+.++|...+.+++--+   +.|...|..+..+|.++.+|+.|+++.+.
T Consensus       131 ~pt~~~~lw~e~~~a~psed~-~~~~l~ltt~~~~s~~ps~~s~~~np---h~~~n~q~~~~~~r~ds~~~~~~~~shPl  206 (581)
T KOG4385|consen  131 SPTPLQGLWKEGTPAHPSEDP-KHSGLDLTTTEASSTEPSKTSKVSNP---HKVENGQHSVSSPRRDSSSMEEHPSSHPL  206 (581)
T ss_pred             CCccHHHHhhccccCCcCCCc-cccceeeeecchhccCccccccCCCc---ccccccccccccccchhhhhhcccccCCc
Confidence            345678899999999999999 99999999999999999999999888   78899999999999999999999998875


Q ss_pred             cC
Q psy15596        136 QS  137 (149)
Q Consensus       136 ~~  137 (149)
                      -+
T Consensus       207 ~~  208 (581)
T KOG4385|consen  207 YA  208 (581)
T ss_pred             cc
Confidence            44

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=89.60  E-value=0.1  Score=34.51  Aligned_cols=62  Identities=15%  Similarity=0.234  Sum_probs=8.4

Q ss_pred             CCCCccccCHHHHHHHhhhhCCCCCchHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhccC
Q psy15596         72 PGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQK---------ERDRLQAMMLHLHMT  133 (149)
Q Consensus        72 PGCe~~~ed~~~FLkHLnseH~LDDrStAQcRVQmqVVqqLE~QL~k---------EkeRLqAMm~HL~m~  133 (149)
                      +-|+..|.+..++++||...|.++-.....+.....++..+..++..         .-.-..+++.|+.-+
T Consensus         3 ~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    3 LFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             ----------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            35999999999999999999999876555555666677776655532         223466677777643

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.50  E-value=0.35  Score=25.70  Aligned_cols=19  Identities=16%  Similarity=0.438  Sum_probs=17.7

Q ss_pred             CCCCccccCHHHHHHHhhh
Q psy15596         72 PGCEAVCEDVQAFYKHLNK   90 (149)
Q Consensus        72 PGCe~~~ed~~~FLkHLns   90 (149)
                      |.|++.|.+...|.+|+..
T Consensus         4 ~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    4 PICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             TTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCccCCHHHHHHHHhH
Confidence            5899999999999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=85.40  E-value=0.95  Score=23.13  Aligned_cols=21  Identities=19%  Similarity=0.450  Sum_probs=17.9

Q ss_pred             CCCCccccCHHHHHHHhhhhC
Q psy15596         72 PGCEAVCEDVQAFYKHLNKEH   92 (149)
Q Consensus        72 PGCe~~~ed~~~FLkHLnseH   92 (149)
                      |-|++.|.+..++.+|+.+.|
T Consensus         4 ~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    4 PICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             SSTS-EESSHHHHHHHHHHHS
T ss_pred             cCCCCcCCcHHHHHHHHHhhC
Confidence            459999999999999999876

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=84.44  E-value=0.82  Score=25.10  Aligned_cols=21  Identities=14%  Similarity=0.311  Sum_probs=18.2

Q ss_pred             CCCccccCHHHHHHHhhhhCC
Q psy15596         73 GCEAVCEDVQAFYKHLNKEHN   93 (149)
Q Consensus        73 GCe~~~ed~~~FLkHLnseH~   93 (149)
                      -|++.|.+..+|++|+..-|.
T Consensus         6 ~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    6 ECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             TTTEEESSHHHHHHHHCTTTT
T ss_pred             ccCCccCChhHHHHHhHHhcC
Confidence            599999999999999976554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	149
4i1l_A	93	Structural And Biological Features Of Foxp3 Dimeriz		2e-13

>pdb|4I1L|A Chain A, Structural And Biological Features Of Foxp3 Dimerization Relevant To Regulatory T Cell Function Length = 93

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 46/70 (65%)
Query: 61  HFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKER 120
           + L  +GVCKWPGCE V E+ + F KH   +H LD++  AQ  +Q +VV  LE QL+ E+
Sbjct: 7   YPLLANGVCKWPGCEKVFEEPEEFLKHCQADHLLDEKGKAQCLLQREVVQSLEQQLELEK 66
Query: 121 DRLQAMMLHL 130
           ++L AM  HL
Sbjct: 67  EKLGAMQAHL 76

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
4i1l_A	93	Scurfin, forkhead box protein P3; FOXP3, dimerizat	100.0
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.16
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.05
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	95.89
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	95.16
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	94.59
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	94.31
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	92.71
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	92.53
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	92.29
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	92.22
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	92.2
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	92.16
2epa_A	72	Krueppel-like factor 10; transforming growth facto	91.91
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.9
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	91.51
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	91.4
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	90.99
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	90.44
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	89.87
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	88.9
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	87.61
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	85.74
2epa_A	72	Krueppel-like factor 10; transforming growth facto	85.49
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	85.34
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	84.43
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	81.98
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	81.5
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	81.0

>4i1l_A Scurfin, forkhead box protein P3; FOXP3, dimerization, complex ensemble, stability, regulatory activity, acetyation, DNA-binding, metal-binding; 2.10A {Mus musculus}

Probab=100.00  E-value=2.7e-51  Score=301.27  Aligned_cols=85  Identities=39%  Similarity=0.637  Sum_probs=61.9

Q ss_pred             ccccccccccCccccCCCCCccccCHHHHHHHhhhhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q psy15596         56 YAEKVHFLFGHGVCKWPGCEAVCEDVQAFYKHLNKEHNLDDRSTAQARVQMQVVSQLELQLQKERDRLQAMMLHLHMTKQ  135 (149)
Q Consensus        56 ~~~~shpLy~hGvCkWPGCe~~~ed~~~FLkHLnseH~LDDrStAQcRVQmqVVqqLE~QL~kEkeRLqAMm~HL~m~~~  135 (149)
                      .++.+||||+||+|+|||||++||||.+||||||+||+|||||||||||||||||+||+||++||+||+|||+||+||+.
T Consensus         2 ~~~~shpL~~~g~CkWPGCe~~~ed~~~FlkHL~~eH~LddrS~AQcrvQ~qvVq~LE~QL~kEreRLqAM~~HL~~K~~   81 (93)
T 4i1l_A            2 AMDPSYPLLANGVCKWPGCEKVFEEPEEFLKHCQADHLLDEKGKAQCLLQREVVQSLEQQLELEKEKLGAMQAHLAGKMA   81 (93)
T ss_dssp             ----------------CCSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC--
T ss_pred             CCCCCCcchhCCcccCCCCCCcccCHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcC
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             cCcch
Q psy15596        136 QSQTV  140 (149)
Q Consensus       136 ~~~~~  140 (149)
                      ...++
T Consensus        82 ~~k~~   86 (93)
T 4i1l_A           82 LAKAP   86 (93)
T ss_dssp             -----
T ss_pred             CCCCC
Confidence            55443

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.16  E-value=0.00026  Score=46.03  Aligned_cols=30  Identities=30%  Similarity=0.608  Sum_probs=27.2

Q ss_pred             ccccCCCCCccccCHHHHHHHhhhhCCCCC
Q psy15596         67 GVCKWPGCEAVCEDVQAFYKHLNKEHNLDD   96 (149)
Q Consensus        67 GvCkWPGCe~~~ed~~~FLkHLnseH~LDD   96 (149)
                      -+|+|-+|++.|.+...|++|++.+|.-..
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~   31 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQD   31 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCC
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcc
Confidence            379999999999999999999999998554

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.05  E-value=0.0034  Score=40.67  Aligned_cols=27  Identities=26%  Similarity=0.757  Sum_probs=25.1

Q ss_pred             CccccCCCCCccccCHHHHHHHhhhhC
Q psy15596         66 HGVCKWPGCEAVCEDVQAFYKHLNKEH   92 (149)
Q Consensus        66 hGvCkWPGCe~~~ed~~~FLkHLnseH   92 (149)
                      .-+|.|-||...+.++..++.|++.+|
T Consensus        38 ~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A           38 PLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCEeeCCCCcCCCCChHHHHhhccccC
Confidence            357999999999999999999999987

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=95.89  E-value=0.0052  Score=30.59  Aligned_cols=23  Identities=22%  Similarity=0.550  Sum_probs=21.2

Q ss_pred             cccCCCCCccccCHHHHHHHhhh
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNK   90 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLns   90 (149)
                      .|.||.|++.|.....+.+|..+
T Consensus         4 ~C~~~~C~k~f~~~~~l~~H~~~   26 (29)
T 2ab3_A            4 VCHFENCGRSFNDRRKLNRHKKI   26 (29)
T ss_dssp             EECSTTTCEEESSHHHHHHHHGG
T ss_pred             CCcCCcCcCccCCHHHHHHHHHH
Confidence            69999999999999999999864

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=95.16  E-value=0.017  Score=29.68  Aligned_cols=23  Identities=17%  Similarity=0.553  Sum_probs=21.3

Q ss_pred             cccCCCCCccccCHHHHHHHhhh
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNK   90 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLns   90 (149)
                      .|.|+.|++.|.....+.+|+.+
T Consensus         4 ~C~~~~C~k~f~~~~~L~~H~~~   26 (31)
T 1sp2_A            4 MCTWSYCGKRFTRSDELQRHKRT   26 (31)
T ss_dssp             BCCSTTCCCBCSSHHHHHHHHTT
T ss_pred             CCcCCCCCcccCCHhHHHHHHHH
Confidence            59999999999999999999875

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=94.59  E-value=0.022  Score=29.33  Aligned_cols=23  Identities=22%  Similarity=0.621  Sum_probs=21.3

Q ss_pred             cccCCCCCccccCHHHHHHHhhh
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNK   90 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLns   90 (149)
                      .|.||.|++.|.....+.+|+.+
T Consensus         5 ~C~~~~C~k~f~~~~~L~~H~~~   27 (32)
T 1zfd_A            5 SCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             CCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             cCcCCCCCCccCCHHHHHHHHHH
Confidence            59999999999999999999875

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=94.31  E-value=0.029  Score=29.99  Aligned_cols=23  Identities=26%  Similarity=0.557  Sum_probs=21.2

Q ss_pred             cccCCCCCccccCHHHHHHHhhh
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNK   90 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLns   90 (149)
                      .|.||+|++.|.....+.+|+..
T Consensus         8 ~C~~~~C~k~f~~~~~L~~H~~~   30 (38)
T 1bhi_A            8 LCTAPGCGQRFTNEDHLAVHKHK   30 (38)
T ss_dssp             ECCCTTTCCEESSHHHHHHHHHH
T ss_pred             ECCCCCCCcccCCHHHHHHHHHH
Confidence            69999999999999999999864

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=92.71  E-value=0.038  Score=37.51  Aligned_cols=30  Identities=30%  Similarity=0.778  Sum_probs=24.5

Q ss_pred             cccCCCCCccccCHHHHHHHhhhhCCCCCc
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNKEHNLDDR   97 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLnseH~LDDr   97 (149)
                      .|+|+.|++.|.+...+.+|+...|..++.
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~   32 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGER   32 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCS
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCC
Confidence            588999999999999999999887655443

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=92.53  E-value=0.1  Score=36.62  Aligned_cols=27  Identities=26%  Similarity=0.347  Sum_probs=24.5

Q ss_pred             cccCCCCCccccCHHHHHHHhhhhCCC
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNKEHNL   94 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLnseH~L   94 (149)
                      .|.||+|++.|..-..+.+|+..-|.-
T Consensus        29 kC~~~~CgKaFsr~s~L~~H~rriHTg   55 (73)
T 1x3c_A           29 RCVHQGCFAAFTIQQNLILHYQAVHKS   55 (73)
T ss_dssp             BCCSTTCCCBCSSHHHHHHHHHHHSSS
T ss_pred             ECCCCCcChhHcCHHHHHHHhhhhCCC
Confidence            699999999999999999999777763

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=92.29  E-value=0.093  Score=33.00  Aligned_cols=25  Identities=28%  Similarity=0.692  Sum_probs=22.7

Q ss_pred             cccCCCCCccccCHHHHHHHhhhhC
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNKEH   92 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLnseH   92 (149)
                      .|.||+|++.|.....+.+|+..-+
T Consensus        17 ~C~~~~C~~~f~~~~~l~~H~~~h~   41 (100)
T 2ebt_A           17 YCDYPGCTKVYTKSSHLKAHLRTHT   41 (100)
T ss_dssp             ECCSSSCCCEESCHHHHHHHHHHHS
T ss_pred             EcCCCCCCCcccCHHHHHHHHHHhC
Confidence            5999999999999999999998643

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=92.22  E-value=0.1  Score=28.08  Aligned_cols=23  Identities=26%  Similarity=0.562  Sum_probs=21.1

Q ss_pred             cccCCCCCccccCHHHHHHHhhh
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNK   90 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLns   90 (149)
                      .|.+|+|++.|.....+.+|+.+
T Consensus        10 ~C~~~~C~k~f~~~~~L~~H~~~   32 (37)
T 1va1_A           10 ICHIQGCGKVYGKTSHLRAHLRW   32 (37)
T ss_dssp             ECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCccCCHHHHHHHHHh
Confidence            69999999999999999999864

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.20  E-value=0.091  Score=29.23  Aligned_cols=25  Identities=28%  Similarity=0.775  Sum_probs=22.5

Q ss_pred             cccCCCCCccccCHHHHHHHhhhhCC
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNKEHN   93 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLnseH~   93 (149)
                      .|.||.|++.|.....|.+|+.+ |.
T Consensus        14 ~C~~~~C~k~f~~~~~L~~H~~~-H~   38 (48)
T 2ent_A           14 ACTWPGCGWRFSRSDELSRHRRS-HS   38 (48)
T ss_dssp             ECCSSSCCCEESSHHHHHHHHTT-SC
T ss_pred             ECCCCCCCCccCCHHHHHHHHHH-hC
Confidence            69999999999999999999875 43

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=92.16  E-value=0.096  Score=31.82  Aligned_cols=27  Identities=26%  Similarity=0.594  Sum_probs=24.0

Q ss_pred             cccCCCCCccccCHHHHHHHhhhhCCC
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNKEHNL   94 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLnseH~L   94 (149)
                      .|.||+|++.|.....+.+|+...|.-
T Consensus         9 ~C~~~~C~~~f~~~~~L~~H~~~~H~~   35 (79)
T 2dlk_A            9 PCDFPGCGRIFSNRQYLNHHKKYQHIH   35 (79)
T ss_dssp             ECSSTTTCCEESSHHHHHHHHHHGGGS
T ss_pred             cCCCCCCcCccCCHHHHHHHHHHHhCC
Confidence            699999999999999999999866653

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=91.91  E-value=0.1  Score=31.53  Aligned_cols=24  Identities=21%  Similarity=0.502  Sum_probs=22.0

Q ss_pred             ccccCCCCCccccCHHHHHHHhhh
Q psy15596         67 GVCKWPGCEAVCEDVQAFYKHLNK   90 (149)
Q Consensus        67 GvCkWPGCe~~~ed~~~FLkHLns   90 (149)
                      -.|.+|||++.|.....+.+|+..
T Consensus        18 ~~C~~~~C~k~f~~~~~L~~H~~~   41 (72)
T 2epa_A           18 HICSHPGCGKTYFKSSHLKAHTRT   41 (72)
T ss_dssp             EECSSTTTCCEESSHHHHHHHHHH
T ss_pred             eeCCCCCCccccCCHHHHHHHHHh
Confidence            369999999999999999999975

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.90  E-value=0.14  Score=29.89  Aligned_cols=23  Identities=26%  Similarity=0.458  Sum_probs=21.5

Q ss_pred             cccCCCCCccccCHHHHHHHhhh
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNK   90 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLns   90 (149)
                      .|.||+|++.|.....+.+|+.+
T Consensus        11 ~C~~~~C~k~F~~~~~L~~H~r~   33 (38)
T 2eln_A           11 KCPTDGCDYSTPDKYKLQAHLKV   33 (38)
T ss_dssp             ECSSSSCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCccCCHHHHHHHHHh
Confidence            79999999999999999999864

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=91.51  E-value=0.12  Score=31.76  Aligned_cols=24  Identities=21%  Similarity=0.582  Sum_probs=21.7

Q ss_pred             cccCCCCCccccCHHHHHHHhhhh
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNKE   91 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLnse   91 (149)
                      .|.||+|++.|.....+.+|+..-
T Consensus         7 ~C~~~~C~~~f~~~~~l~~H~~~h   30 (89)
T 2wbs_A            7 TCDYAGCGKTYTKSSHLKAHLRTH   30 (89)
T ss_dssp             ECCSTTTCCEESSHHHHHHHHTTS
T ss_pred             eCCCCCCCCcCCCHHHHHHHHHhc
Confidence            699999999999999999999863

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=91.40  E-value=0.043  Score=31.43  Aligned_cols=23  Identities=22%  Similarity=0.599  Sum_probs=21.3

Q ss_pred             cccCCCCCccccCHHHHHHHhhh
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNK   90 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLns   90 (149)
                      .|.||+|++.|.....+.+|+.+
T Consensus        20 ~C~~~~C~k~F~~~~~L~~H~~~   42 (47)
T 1ncs_A           20 ECLFPGCTKTFKRRYNIRSHIQT   42 (47)
T ss_dssp             ECCCTTCCCEECSSSSHHHHHHH
T ss_pred             ECCCCCCCCccCCHHHHHHHHHH
Confidence            69999999999999999999865

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=90.99  E-value=0.14  Score=30.92  Aligned_cols=24  Identities=17%  Similarity=0.401  Sum_probs=20.1

Q ss_pred             cccCCCCCccccCHHHHHHHhhhh
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNKE   91 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLnse   91 (149)
                      .|.|+.|++.|.+...+.+|+.+-
T Consensus         3 ~C~~~~C~~~f~~~~~l~~H~~~h   26 (85)
T 2j7j_A            3 VCHFENCGKAFKKHNQLKVHQFSH   26 (85)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             cCCCCCCCcccCCHHHHHHHHHHh
Confidence            488899999999999999998653

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.44  E-value=0.35  Score=30.24  Aligned_cols=34  Identities=21%  Similarity=0.425  Sum_probs=27.9

Q ss_pred             ccccCccccCC----------CCCccccCHHHHHHHhhhhCCCC
Q psy15596         62 FLFGHGVCKWP----------GCEAVCEDVQAFYKHLNKEHNLD   95 (149)
Q Consensus        62 pLy~hGvCkWP----------GCe~~~ed~~~FLkHLnseH~LD   95 (149)
                      ++-.+-.|+|.          .|++.|.....+.+|+...|.-+
T Consensus         9 ~~~~~~~c~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~   52 (95)
T 2ej4_A            9 PIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGG   52 (95)
T ss_dssp             CCCCCCCCCCCCSSCSSSSCCCCCCCCSSHHHHHHHHHHTTTCC
T ss_pred             CCCCCceeEeecCCcCCCcccccccccCCHHHHHHHHHHhccCC
Confidence            44556788887          79999999999999998877643

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=89.87  E-value=0.22  Score=32.07  Aligned_cols=24  Identities=25%  Similarity=0.625  Sum_probs=21.4

Q ss_pred             cccCCCCCccccCHHHHHHHhhhh
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNKE   91 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLnse   91 (149)
                      .|.||+|++.|.+...+.+|+..-
T Consensus         8 ~C~~~~C~~~f~~~~~l~~H~~~h   31 (119)
T 2jp9_A            8 MCAYPGCNKRYFKLSHLQMHSRKH   31 (119)
T ss_dssp             CCCSTTSCCCBSCHHHHHHHHHHH
T ss_pred             eCCCCCCcchhCCHHHHHHHHHhh
Confidence            699999999999999999998853

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=88.90  E-value=0.53  Score=31.97  Aligned_cols=38  Identities=18%  Similarity=0.374  Sum_probs=30.1

Q ss_pred             cccccccCccccC----------CCCCccccCHHHHHHHhhhhCCCCC
Q psy15596         59 KVHFLFGHGVCKW----------PGCEAVCEDVQAFYKHLNKEHNLDD   96 (149)
Q Consensus        59 ~shpLy~hGvCkW----------PGCe~~~ed~~~FLkHLnseH~LDD   96 (149)
                      ..-|+...-.|+|          +.|++.|.+...+.+|+...|..+.
T Consensus         6 ~~~~~~~~~~c~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~   53 (155)
T 2rpc_A            6 SGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGP   53 (155)
T ss_dssp             CSCCCCCCBCCCBCCTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCT
T ss_pred             CCCccCCCeeEEeechhhcccccccCCcccCCHHHHHHHHHhhcCCCc
Confidence            3445566667888          6699999999999999998887643

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=87.61  E-value=0.36  Score=31.52  Aligned_cols=23  Identities=35%  Similarity=0.693  Sum_probs=21.3

Q ss_pred             cccCCCCCccccCHHHHHHHhhh
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNK   90 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLns   90 (149)
                      .|.|++|++.|.+...+.+|+..
T Consensus         7 ~C~~~~C~~~f~~~~~l~~H~~~   29 (124)
T 1ubd_C            7 ACPHKGCTKMFRDNSAMRKHLHT   29 (124)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGG
T ss_pred             cCCCCCCcCccCCHHHHHHHHHH
Confidence            69999999999999999999974

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=85.74  E-value=0.51  Score=28.46  Aligned_cols=24  Identities=17%  Similarity=0.293  Sum_probs=22.1

Q ss_pred             ccccCCCCCccccCHHHHHHHhhh
Q psy15596         67 GVCKWPGCEAVCEDVQAFYKHLNK   90 (149)
Q Consensus        67 GvCkWPGCe~~~ed~~~FLkHLns   90 (149)
                      -.|.+|+|++.|.....+.+|+.+
T Consensus        39 ~~C~~~~C~k~f~~~~~L~~H~~~   62 (79)
T 2dlk_A           39 FSCPEPACGKSFNFKKHLKEHMKL   62 (79)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHH
T ss_pred             eECCCCCCcCccCCHHHHHHHHHH
Confidence            479999999999999999999975

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=85.49  E-value=0.48  Score=28.44  Aligned_cols=23  Identities=26%  Similarity=0.635  Sum_probs=21.0

Q ss_pred             ccccCCCCCccccCHHHHHHHhh
Q psy15596         67 GVCKWPGCEAVCEDVQAFYKHLN   89 (149)
Q Consensus        67 GvCkWPGCe~~~ed~~~FLkHLn   89 (149)
                      -.|.|++|++.|.....+.+|+.
T Consensus        48 ~~C~~~~C~k~f~~~~~l~~H~~   70 (72)
T 2epa_A           48 FSCSWKGCERRFARSDELSRHRR   70 (72)
T ss_dssp             EECCCTTCCCEESSHHHHHHHTT
T ss_pred             ccCCCCCCCcccCCHHHHHhHhh
Confidence            46999999999999999999975

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=85.34  E-value=0.59  Score=28.12  Aligned_cols=23  Identities=26%  Similarity=0.494  Sum_probs=13.7

Q ss_pred             cccCCC-CCccccCHHHHHHHhhh
Q psy15596         68 VCKWPG-CEAVCEDVQAFYKHLNK   90 (149)
Q Consensus        68 vCkWPG-Ce~~~ed~~~FLkHLns   90 (149)
                      .|..|+ |++.|.....|.+|+..
T Consensus        60 ~C~~~~~C~~~f~~~~~l~~H~~~   83 (85)
T 2j7j_A           60 PCKKDDSCSFVGKTWTLYLKHVAE   83 (85)
T ss_dssp             ECCSCSSCCCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCCCccCCHHHHHHHHHh
Confidence            455555 66666666666666554

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=84.43  E-value=0.6  Score=29.97  Aligned_cols=24  Identities=25%  Similarity=0.697  Sum_probs=21.4

Q ss_pred             ccccCCCCCccccCHHHHHHHhhh
Q psy15596         67 GVCKWPGCEAVCEDVQAFYKHLNK   90 (149)
Q Consensus        67 GvCkWPGCe~~~ed~~~FLkHLns   90 (149)
                      -.|.||.|++.|.....+.+|+.+
T Consensus        95 ~~C~~~~C~~~f~~~~~L~~H~~~  118 (119)
T 2jp9_A           95 FSCRWPSCQKKFARSDELVRHHNM  118 (119)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHT
T ss_pred             eeCCCCCCccccCCHHHHHHHHhc
Confidence            469999999999999999999863

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=81.98  E-value=0.9  Score=27.79  Aligned_cols=25  Identities=12%  Similarity=0.391  Sum_probs=22.3

Q ss_pred             cccCCCCCccccCHHHHHHHhhhhC
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNKEH   92 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLnseH   92 (149)
                      .|.|++|++.|.+...+.+|+.+-+
T Consensus         6 ~C~~~~C~~~f~~~~~l~~H~~~h~   30 (90)
T 1a1h_A            6 ACPVESCDRRFSQSGSLTRHIRIHT   30 (90)
T ss_dssp             ECCSSSCCCEESSHHHHHHHHHHHH
T ss_pred             ECCCCCCCCccCCHHHHHHHHHHhC
Confidence            6999999999999999999998644

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=81.50  E-value=0.98  Score=27.57  Aligned_cols=25  Identities=24%  Similarity=0.574  Sum_probs=22.2

Q ss_pred             ccccCCCCCccccCHHHHHHHhhhh
Q psy15596         67 GVCKWPGCEAVCEDVQAFYKHLNKE   91 (149)
Q Consensus        67 GvCkWPGCe~~~ed~~~FLkHLnse   91 (149)
                      -.|.|++|++.|.....+.+|+..-
T Consensus        36 ~~C~~~~C~~~f~~~~~l~~H~~~h   60 (89)
T 2wbs_A           36 YHCDWDGCGWKFARSDELTRHYRKH   60 (89)
T ss_dssp             EECCSTTTCCEESSHHHHHHHHHHH
T ss_pred             cCCCCCCCCCccCCHHHHHHHHHHc
Confidence            4799999999999999999998653

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=81.00  E-value=0.95  Score=27.05  Aligned_cols=25  Identities=12%  Similarity=0.336  Sum_probs=22.4

Q ss_pred             ccccCCCCCccccCHHHHHHHhhhh
Q psy15596         67 GVCKWPGCEAVCEDVQAFYKHLNKE   91 (149)
Q Consensus        67 GvCkWPGCe~~~ed~~~FLkHLnse   91 (149)
                      -.|.|++|++.|.....+.+|+.+-
T Consensus        20 ~~C~~~~C~k~f~~~~~l~~H~~~h   44 (73)
T 1f2i_G           20 YACPVESCDRRFSRSDELTRHIRIH   44 (73)
T ss_dssp             EECSSTTBCCEESSHHHHHHHHHHH
T ss_pred             cCCcCCCCCCccCCHHHHHHHHHhh
Confidence            4799999999999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d2glia1	32	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.68
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.09
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.74
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.71
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	96.7
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	96.43
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.36
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	96.16
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	94.68
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	94.55
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.55
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	92.26
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	88.49

>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.4e-05  Score=47.77  Aligned_cols=30  Identities=30%  Similarity=0.778  Sum_probs=28.0

Q ss_pred             cccCCCCCccccCHHHHHHHhhhhCCCCCc
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNKEHNLDDR   97 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLnseH~LDDr   97 (149)
                      .|.|-+|...|.+-.++++|+|+||...+|
T Consensus         3 nChW~~C~~eFdtQd~LV~HinndHI~~~K   32 (32)
T d2glia1           3 DCRWDGCSQEFDSQEQLVHHINSEHIHGER   32 (32)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCS
T ss_pred             cccccccccccCCHHHHHHHccccccccCC
Confidence            599999999999999999999999987765

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.00011  Score=42.66  Aligned_cols=23  Identities=22%  Similarity=0.621  Sum_probs=21.2

Q ss_pred             cccCCCCCccccCHHHHHHHhhh
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNK   90 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLns   90 (149)
                      +|.||||++.|.....+.+|..+
T Consensus         5 ~C~~pgC~k~F~r~~~L~~H~r~   27 (32)
T d1zfda_           5 SCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             CCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             ECcCCCCCCeeCCHHHHHHHhhh
Confidence            79999999999999999999763

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00015  Score=41.27  Aligned_cols=23  Identities=22%  Similarity=0.563  Sum_probs=20.8

Q ss_pred             cccCCCCCccccCHHHHHHHhhh
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNK   90 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLns   90 (149)
                      +|.||||++.|.....+-+|..+
T Consensus         4 ~C~~~gC~K~F~~~~~L~~H~r~   26 (28)
T d1ubdc4           4 VCPFDGCNKKFAQSTNLKSHILT   26 (28)
T ss_dssp             CCCSTTCCCCCSSTTTTHHHHHH
T ss_pred             CCCCCCcCCcCCCHHHHHHHHhh
Confidence            79999999999999999999753

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.0005  Score=39.35  Aligned_cols=22  Identities=23%  Similarity=0.652  Sum_probs=20.8

Q ss_pred             cccCCCCCccccCHHHHHHHhh
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLN   89 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLn   89 (149)
                      +|.||||++.|.....+-+|+.
T Consensus         4 ~C~~~gCgk~F~~~~~L~~H~r   25 (30)
T d2glia3           4 KCTFEGCRKSYSRLENLKTHLR   25 (30)
T ss_dssp             CCCSTTCCCCCSSHHHHHHHHH
T ss_pred             eCCCCCCCceECChhHhhhhcC
Confidence            6999999999999999999985

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.70  E-value=0.00041  Score=39.54  Aligned_cols=22  Identities=14%  Similarity=0.446  Sum_probs=20.5

Q ss_pred             cccCCCCCccccCHHHHHHHhh
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLN   89 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLn   89 (149)
                      +|.||||++.|..-..+.+|..
T Consensus         4 ~C~~~gC~k~F~~~~~L~~H~r   25 (29)
T d1a1ia1           4 ACPVESCDRRFSRSADLTRHIR   25 (29)
T ss_dssp             ECCSTTCCCEESSHHHHHHHTH
T ss_pred             ECCCCCCCcEECchhHhhhhcC
Confidence            6999999999999999999964

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00098  Score=38.11  Aligned_cols=25  Identities=20%  Similarity=0.595  Sum_probs=22.6

Q ss_pred             cccCCCCCccccCHHHHHHHhhhhCC
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNKEHN   93 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLnseH~   93 (149)
                      .|.||||++.|.....+-+|+.+ |+
T Consensus         4 ~C~~~~C~k~F~~~~~L~~H~r~-Ht   28 (31)
T d1sp2a_           4 MCTWSYCGKRFTRSDELQRHKRT-HT   28 (31)
T ss_dssp             BCCSTTCCCBCSSHHHHHHHHTT-TS
T ss_pred             CCcCCCCCcCcCChhHhhhhcCc-cc
Confidence            69999999999999999999975 54

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.00096  Score=37.96  Aligned_cols=23  Identities=17%  Similarity=0.349  Sum_probs=21.3

Q ss_pred             cccCCCCCccccCHHHHHHHhhh
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNK   90 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLns   90 (149)
                      +|.||||++.|.....+-+|..+
T Consensus         4 ~C~~~gCgk~F~~~~~L~~H~r~   26 (30)
T d1ubdc3           4 QCTFEGCGKRFSLDFNLRTHVRI   26 (30)
T ss_dssp             ECCSTTCCCEESCHHHHHHHHHH
T ss_pred             cCCCCCCCceECcHHHcCccccc
Confidence            69999999999999999999864

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0014  Score=38.51  Aligned_cols=25  Identities=20%  Similarity=0.442  Sum_probs=22.9

Q ss_pred             cccCCCCCccccCHHHHHHHhhhhCC
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNKEHN   93 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLnseH~   93 (149)
                      .|.||||++.|.....+.+|+.+ |.
T Consensus         3 ~C~~~~C~k~F~~~~~L~~H~r~-Ht   27 (36)
T d2dlka2           3 SCPEPACGKSFNFKKHLKEHMKL-HS   27 (36)
T ss_dssp             ECSCTTTCCEESSHHHHHHHHHH-HH
T ss_pred             ECCCCCCCCeeCChhHhccccCe-eC
Confidence            69999999999999999999886 54

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.68  E-value=0.0031  Score=38.58  Aligned_cols=23  Identities=22%  Similarity=0.599  Sum_probs=21.0

Q ss_pred             cccCCCCCccccCHHHHHHHhhh
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNK   90 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLns   90 (149)
                      .|.||||++.|.....+.+|+.+
T Consensus        20 ~C~~~~C~k~F~~~~~L~~H~r~   42 (47)
T d1ncsa_          20 ECLFPGCTKTFKRRYNIRSHIQT   42 (47)
T ss_dssp             ECCCTTCCCEECSSSSHHHHHHH
T ss_pred             ECCcCCCCccccCchHHHhhccc
Confidence            79999999999999999999753

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.011  Score=34.27  Aligned_cols=26  Identities=27%  Similarity=0.641  Sum_probs=20.6

Q ss_pred             cccCCCCCccccCHHHHHHHhhhhCC
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNKEHN   93 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLnseH~   93 (149)
                      .|.+|||+++|.+-+-+-.|..-.|.
T Consensus         2 ~cdf~gc~kifsnrqylnhh~kyqh~   27 (30)
T d2dlka1           2 PCDFPGCGRIFSNRQYLNHHKKYQHI   27 (30)
T ss_dssp             ECSSTTTCCEESSHHHHHHHHHHGGG
T ss_pred             CCCCCCchhhhccHHHHHhHHHHHHh
Confidence            49999999999998777666665553

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=0.025  Score=32.66  Aligned_cols=26  Identities=38%  Similarity=0.779  Sum_probs=24.2

Q ss_pred             cccCCCCCccccCHHHHHHHhhhhCC
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNKEHN   93 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLnseH~   93 (149)
                      .|+-|||.+-..|..++-||..+-|.
T Consensus         4 ~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           4 VCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             ECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             ecccCCCCcccCCHHHHHHHHHhhCC
Confidence            69999999999999999999998773

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.26  E-value=0.016  Score=33.92  Aligned_cols=27  Identities=26%  Similarity=0.557  Sum_probs=24.4

Q ss_pred             cccCCCCCccccCHHHHHHHhhhhCCC
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNKEHNL   94 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLnseH~L   94 (149)
                      +|..|||.+.|..-.+=.||.|..|.-
T Consensus         4 ~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           4 MCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             ECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             cccCCChhhhhcchhhhhhhccccccC
Confidence            699999999999999999999988863

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.49  E-value=0.16  Score=28.91  Aligned_cols=23  Identities=35%  Similarity=0.693  Sum_probs=21.0

Q ss_pred             cccCCCCCccccCHHHHHHHhhh
Q psy15596         68 VCKWPGCEAVCEDVQAFYKHLNK   90 (149)
Q Consensus        68 vCkWPGCe~~~ed~~~FLkHLns   90 (149)
                      .|---||++.|.|..+.-|||++
T Consensus         3 ~CphkgC~K~Frd~saMRKHlht   25 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHT   25 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGG
T ss_pred             cCCcccHHHHhhchHHHHHHhhc
Confidence            47788999999999999999986