Psyllid ID: psy1562

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620

MNSNNNVPYKMNNMSPYSFVPAYQHVAPVQNSGLNNMDMAAHQMTYNRPPEYYYDDTTHQQMPVLPQPHSLNNMDMAAHQMTYNRPPEYYYDDTTHQQMPVLPQPHSNIIPPSVGSYQSWTTEVLTIALMLLKPRTVGYDRISHTGEKLNHRVDLKKLTSFNNEAPTDLATRCDKSSCTLPYCFCSKDGTIIPGGLDAEDTPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSDYSMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEVVEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQNTLHDAIPHQLVPNQRAGTGTTQVLGLGCSKCVDHHPYVSLCPSGLYFDDIKKLCTFKNEARCGPLPTSKPDVWFVTITQALTWMTNPKSSKELLNYDAWKCAKSETAPLEACNLPNKCALGFRPPEANISATRYLTTCRECPRKYPWLGDSEGTGIAGRDVYNPEIQRRR

cccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccHHHHHHHHHccccccccccccEEEEEEcccccHHHHHHHHHHccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccEEEcccccccccccHHHHHHHcccEEEcccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEccccHHccccHHHHHHHHHHHHHHccccEEEccccHHHHHccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEcHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccc

ccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccEEEcccccccccccccccccccHHHHHHHHHccccccEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEccccccccccccccHHHccccccccccccccccccHcccccccccccccccccccccHccccEEEEEEEcccccHHHHHHHHHHHccccccccccccEEEEEEEcccccHHHHHHHHHcccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccHHHEEccccccccccccHHHHHHHHcccEEccccccccccccccccEcccccccccccccccccccccEEEEEcHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccEEEcHHHHHcccHHHHHHHHHHHHHcccEEEEEHHHHHHHccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEEHHHHHHHccccccHHHHccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccHHcccc

mnsnnnvpykmnnmspysfvpayqhvapvqnsglnnmdmaahqmtynrppeyyyddtthqqmpvlpqphslnnmdmaahqmtynrppeyyyddtthqqmpvlpqphsniippsvgsyqsWTTEVLTIALMLLkprtvgydrishtgeklnhrvdlkkltsfnneaptdlatrcdkssctlpycfcskdgtiipggldaedtpQMILLTFdgavnlnnydhYQKVFsdsrknpngcpmkgtffisheysdYSMIQNLANRGHEIGVETIslqdglqdkgyEEWVGEMIGMREILHHFAnitrsdivgmrapfllpgrntqfevVEDFGfiydssvsvpalkfpvwpytldhkiphecksgtcptksfpgvwevplnahfvesyegghcpyldqcvlhnhdSDEVLEWLKEDFNKyytqnkapymmpfhtnwFQIKELEQGLHKFLDWAAQntlhdaiphqlvpnqragtgttqvlglgcskcvdhhpyvslcpsglyfddIKKLctfknearcgplptskpdvWFVTITQALTwmtnpksskellnydawkcaksetapleacnlpnkcalgfrppeanisaTRYLTtcrecprkypwlgdsegtgiagrdvynpeiqrrr

mnsnnnvpykmNNMSPYSFVPAYQHVAPVQNSGLNNMDMAAHQMTYNRPPEYYYDDTTHQQMPVLPQPHSLNNMDMAAHQMTYNRPPEYYYDDTTHQQMPVLPQPHSNIIPPSVGSYQSWTTEVLTIALMLLKPRTVGYDRISHtgeklnhrvdlkkltsfnneaptdlatrcdksscTLPYCFCSKDGTIIPGGLDAEDTPQMILLTFDGAVNLNNYDHYQKVFSdsrknpngCPMKGTFFISHEYSDYSMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEVVEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQNTLHDAIPHQLVPNQRAGTGTTQVLGLGCSKCVDHHPYVSLCPSGLYFDDIKKLCTFKNEArcgplptskpdvWFVTITQALTWMTNPKSSKELLNYDAWKCAKSETAPLEACNLPNKCALGFRPPEANISATRYLTTcrecprkypwlgdsegtgiagrdvynpeiqrrr

****************YSFVPAYQHVAPV**********************YYY**********************************YYYD****************IIPPSVGSYQSWTTEVLTIALMLLKPRTVGYDRISHTGEKLNHRVDLKKLTSFNNEAPTDLATRCDKSSCTLPYCFCSKDGTIIPGGLDAEDTPQMILLTFDGAVNLNNYDHYQKVFSDS***PNGCPMKGTFFISHEYSDYSMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEVVEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQNTLHDAIPHQLVPNQRAGTGTTQVLGLGCSKCVDHHPYVSLCPSGLYFDDIKKLCTFKNEARCGPLPTSKPDVWFVTITQALTWMTNPKSSKELLNYDAWKCAKSETAPLEACNLPNKCALGFRPPEANISATRYLTTCRECPRKYPWLGDSEGTGIAG************

******V***MNNMSPYSFVPAYQHVAPVQNSGLNNMDMAAHQMTYNRPPEYYYDDTTHQQMPVLPQPHSLNNMDMAAHQMTYNRPPEYYYDDTTHQQ***************VGSYQSWTTEVLTIALMLLKP**VG*******************************ATRCDKSSCTLPYCFCSKDGTIIPGGLDAEDTPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSDYSMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEVVEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQNTLHDAIPHQLVPNQRAGTGTTQVLGLGCSKCVDHHPYVSLCPSGLYFDDIKKLCTFKNEARCGPLPTSKPDVWFVTITQALTWMTNPKSSKELLNYDAWKCAKSETAPLEACNLPNKCALGFRPPEANISATRYLTTCRECPRKYPWLGDSEGTGIAGRDV*********

****NNVPYKMNNMSPYSFVPAYQHVAPVQNSGLNNMDMAAHQMTYNRPPEYYYDDTTHQQMPVLPQPHSLNNMDMAAHQMTYNRPPEYYYDDTTHQQMPVLPQPHSNIIPPSVGSYQSWTTEVLTIALMLLKPRTVGYDRISHTGEKLNHRVDLKKLTSFNNEAPTDLATRCDKSSCTLPYCFCSKDGTIIPGGLDAEDTPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSDYSMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEVVEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQNTLHDAIPHQLVPNQRAGTGTTQVLGLGCSKCVDHHPYVSLCPSGLYFDDIKKLCTFKNEARCGPLPTSKPDVWFVTITQALTWMTNPKSSKELLNYDAWKCAKSETAPLEACNLPNKCALGFRPPEANISATRYLTTCRECPRKYPWLGDSEGTGIAGRDVYNPE*****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		620
160333785		490	chitin deacetylase 4 precursor [Triboliu	0.632	0.8	0.553	1e-146
193652401		479	PREDICTED: hypothetical protein LOC10016	0.474	0.613	0.731	1e-139
383855560		484	PREDICTED: uncharacterized protein LOC10	0.480	0.615	0.722	1e-138
328791955		486	PREDICTED: hypothetical protein LOC72581	0.480	0.613	0.715	1e-137
380017152		486	PREDICTED: uncharacterized protein LOC10	0.480	0.613	0.715	1e-137
158288941		492	AGAP000359-PA [Anopheles gambiae str. PE	0.456	0.575	0.787	1e-137
307197619		491	hypothetical protein EAI_14363 [Harpegna	0.480	0.606	0.709	1e-137
307177662		483	hypothetical protein EAG_00698 [Camponot	0.480	0.616	0.702	1e-137
156546448		489	PREDICTED: hypothetical protein LOC10012	0.479	0.607	0.717	1e-137
170040462		490	conserved hypothetical protein [Culex qu	0.458	0.579	0.781	1e-136

>gi\|160333785\|ref\|NP_001103903.1\| chitin deacetylase 4 precursor [Tribolium castaneum] gi\|158562480\|gb\|ABW74146.1\| chitin deacetylase 4 [Tribolium castaneum] gi\|270005565\|gb\|EFA02013.1\| hypothetical protein TcasGA2_TC007635 [Tribolium castaneum]	Back alignment and taxonomy information

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 269/486 (55%), Positives = 320/486 (65%), Gaps = 94/486 (19%)

Query: 154 DLKKLTSFNNEA---------------PTDLATRCDKSSCTLPYCFCSKDGTIIPGGLDA 198
           D+ K  +F NEA               PTDLA +C+   C LPYCFCSKDGTIIPGGLD 
Sbjct: 79  DISKFCTFKNEARCGPIASTPAPVTEPPTDLAPKCNTGECELPYCFCSKDGTIIPGGLDP 138

Query: 199 EDTPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSDYSMIQNLAN 258
           E+TPQMIL+TFDGA+NLNNYDHY+KVF+  R+NPNGC ++GTFFISHEYS+Y MIQ LA+
Sbjct: 139 EETPQMILMTFDGAINLNNYDHYKKVFNKKRQNPNGCDIRGTFFISHEYSNYQMIQGLAS 198

Query: 259 RGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNT 318
            GHE+  ETISLQ GLQDKGYEEWVGEMIGMREIL HFANI++S +VGMRAPFL PGRNT
Sbjct: 199 DGHEMATETISLQMGLQDKGYEEWVGEMIGMREILRHFANISKSQVVGMRAPFLKPGRNT 258

Query: 319 QFEVVEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHF 378
           Q++V+EDFG+IYDSS+ VP L  PVWPYTLD+KIPHECKSG+CPTKSFPGVWE+PLNAHF
Sbjct: 259 QYKVLEDFGYIYDSSIGVPPLAVPVWPYTLDYKIPHECKSGSCPTKSFPGVWEIPLNAHF 318

Query: 379 VESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQ 438
           V+ YEGGHCPYLDQCVLHNHD+ EV EWL+EDFN++Y QN+APYMMPFHTNWF IKELEQ
Sbjct: 319 VDGYEGGHCPYLDQCVLHNHDAQEVFEWLQEDFNRHYEQNRAPYMMPFHTNWFSIKELEQ 378

Query: 439 GLHKFLDWAAQNTLHDAIPHQLVPNQRAGTGTTQVLGLGCSKCVDHHPYVSLCPSGLYFD 498
           GLHKFLDW              +P+    TGT  +  +   K                  
Sbjct: 379 GLHKFLDWTVT-----------LPDVWFVTGTQALTWMTDPK------------------ 409

Query: 499 DIKKLCTF-----KNEARCGPLPTSKPDVWFVTITQALTWMTNPKSSKELLNYDAWKCAK 553
            IK+L  +     KN+A   P   + P+                   K  LN+       
Sbjct: 410 TIKELNNYEGWSCKNKANLPPKSCNNPN-------------------KCALNFKTPDLNF 450

Query: 554 SETAPLEACNLPNKCALGFRPPEANISATRYLTTCRECPRKYPWLGDSEGTGIAGRDVYN 613
           ++T  LE CN                          +CP +YPWLGD+EG+GIAG+D Y 
Sbjct: 451 TDTRYLETCN--------------------------DCPNQYPWLGDAEGSGIAGKDNYV 484

Query: 614 PEIQRR 619
           P+  R+
Sbjct: 485 PDNVRK 490

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|193652401\|ref\|XP_001951879.1\| PREDICTED: hypothetical protein LOC100161729 [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|383855560\|ref\|XP_003703278.1\| PREDICTED: uncharacterized protein LOC100879522 [Megachile rotundata]	Back alignment and taxonomy information

>gi\|328791955\|ref\|XP_001120478.2\| PREDICTED: hypothetical protein LOC725813 [Apis mellifera]	Back alignment and taxonomy information

>gi\|380017152\|ref\|XP_003692526.1\| PREDICTED: uncharacterized protein LOC100872047 [Apis florea]	Back alignment and taxonomy information

>gi\|158288941\|ref\|XP_310753.4\| AGAP000359-PA [Anopheles gambiae str. PEST] gi\|157018813\|gb\|EAA06323.5\| AGAP000359-PA [Anopheles gambiae str. PEST]	Back alignment and taxonomy information

>gi\|307197619\|gb\|EFN78807.1\| hypothetical protein EAI_14363 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|307177662\|gb\|EFN66708.1\| hypothetical protein EAG_00698 [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|156546448\|ref\|XP_001607989.1\| PREDICTED: hypothetical protein LOC100123586 [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|170040462\|ref\|XP_001848017.1\| conserved hypothetical protein [Culex quinquefasciatus] gi\|167864101\|gb\|EDS27484.1\| conserved hypothetical protein [Culex quinquefasciatus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		620
FB\|FBgn0052499		486	Cda4 "Chitin deacetylase-like	0.461	0.588	0.737	4.4e-154
FB\|FBgn0032598		577	ChLD3 "ChLD3" [Drosophila mela	0.448	0.481	0.432	1.9e-81
FB\|FBgn0260653		541	serp "serpentine" [Drosophila	0.437	0.500	0.420	1.2e-75
FB\|FBgn0051973		1998	Cda5 "Chitin deacetylase-like	0.453	0.140	0.425	4.3e-71
FB\|FBgn0261341		555	verm "vermiform" [Drosophila m	0.524	0.585	0.397	3.7e-64
WB\|WBGene00018607		2444	F48E3.8b [Caenorhabditis elega	0.438	0.111	0.362	4.1e-54
WB\|WBGene00002983		1884	lgx-1 [Caenorhabditis elegans	0.574	0.188	0.335	2.6e-53
FB\|FBgn0034197		397	Cda9 "Chitin deacetylase-like	0.416	0.649	0.380	1.6e-51

FB\|FBgn0052499 Cda4 "Chitin deacetylase-like 4" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 1241 (441.9 bits), Expect = 4.4e-154, Sum P(2) = 4.4e-154
 Identities = 211/286 (73%), Positives = 245/286 (85%)

Query:   164 EAPTDLATRCDKSSCTLPYCFCSKDGTIIPGGLDAEDTPQMILLTFDGAVNLNNYDHYQK 223
             EAP D A RC+  +C LPYCFCSKDGT IPG L+ E  PQ+I+LTFDGAVNLNNY HYQK
Sbjct:    92 EAPADTAQRCNTENCALPYCFCSKDGTQIPGDLEPEKIPQIIMLTFDGAVNLNNYQHYQK 151

Query:   224 VFSDSRKNPNGCPMKGTFFISHEYSDYSMIQNLANRGHEIGVETISLQDGLQDKGYEEWV 283
             +F   RKNPNGC ++GTFF+SHEYS+Y  IQ+L   GHEIG E+IS Q GLQDKGYEEWV
Sbjct:   152 IFDGKRKNPNGCLIRGTFFMSHEYSNYQQIQHLGYYGHEIGTESISQQQGLQDKGYEEWV 211

Query:   284 GEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEVVEDFGFIYDSSVSVPALKFPV 343
             GEMIGMREIL HFAN++ +D+VGMRAPFL PGRNTQ++V+EDFG+IYDSS++VP +  PV
Sbjct:   212 GEMIGMREILRHFANVSVNDVVGMRAPFLKPGRNTQYKVLEDFGYIYDSSITVPPVPVPV 271

Query:   344 WPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEV 403
             WPYTLD+KI HECKSGTCP+++FPGVWEVPLN H+VE YEGGHCPYLDQCVLHN D +EV
Sbjct:   272 WPYTLDYKISHECKSGTCPSRTFPGVWEVPLNTHYVEGYEGGHCPYLDQCVLHNLDEEEV 331

Query:   404 LEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQ 449
              +WL+EDF++YY QNKAPYMMPFHTNWFQ K LE GLHKFLDWA +
Sbjct:   332 FQWLQEDFSRYYEQNKAPYMMPFHTNWFQTKPLENGLHKFLDWALE 377

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0006030 "chitin metabolic process" evidence=IEA

GO:0008061 "chitin binding" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

FB\|FBgn0032598 ChLD3 "ChLD3" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0260653 serp "serpentine" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0051973 Cda5 "Chitin deacetylase-like 5" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0261341 verm "vermiform" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

WB\|WBGene00018607 F48E3.8b [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

WB\|WBGene00002983 lgx-1 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

FB\|FBgn0034197 Cda9 "Chitin deacetylase-like 9" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		620
cd10974		269	cd10974, CE4_CDA_like_1, Putative catalytic domain	1e-147
cd10975		268	cd10975, CE4_CDA_like_2, Putative catalytic domain	3e-83
cd10919		273	cd10919, CE4_CDA_like, Putative catalytic domain o	1e-65
cd10941		258	cd10941, CE4_PuuE_HpPgdA_like_2, Putative catalyti	2e-08
cd10976		299	cd10976, CE4_CDA_like_3, Putative catalytic domain	1e-04
cd10974		269	cd10974, CE4_CDA_like_1, Putative catalytic domain	2e-04
pfam01607		53	pfam01607, CBM_14, Chitin binding Peritrophin-A do	0.001

>gnl\|CDD\|200596 cd10974, CE4_CDA_like_1, Putative catalytic domain of chitin deacetylase-like proteins with additional chitin-binding peritrophin-A domain (ChBD) and/or a low-density lipoprotein receptor class A domain (LDLa)	Back alignment and domain information

 Score =  426 bits (1098), Expect = e-147
 Identities = 135/250 (54%), Positives = 175/250 (70%), Gaps = 2/250 (0%)

Query: 202 PQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSDYSMIQNLANRGH 261
           PQMI LTFD A+N NN + Y+K+F+  R NPNGCP+KGTFF+SHEY++Y  +Q L  +GH
Sbjct: 1   PQMITLTFDDAINDNNIELYKKIFNGKRNNPNGCPIKGTFFVSHEYTNYQAVQKLHRKGH 60

Query: 262 EIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFE 321
           EI V +I+  D   +  YE+WV EM+GMREIL  FANIT ++IVGMRAPFL  G N QFE
Sbjct: 61  EIAVHSITHNDDENNATYEDWVKEMVGMREILEKFANITDNEIVGMRAPFLRVGGNRQFE 120

Query: 322 VVEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVES 381
           ++E+FGF+YDSS++ P    P+WPYTLD+K+PHEC    CPT+SFPGVWE+ LN   V  
Sbjct: 121 MMEEFGFLYDSSITAPPSNVPLWPYTLDYKMPHECHGQNCPTRSFPGVWEMVLNELDVRD 180

Query: 382 YEGGHCPY-LDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIK-ELEQG 439
              G  P  +D   L+    D+V EWL+ +F ++Y  N+APY + FHTNW + K EL + 
Sbjct: 181 DPQGDEPLAMDDSCLNILSGDQVYEWLQHNFERHYLTNRAPYGLYFHTNWLKTKNELLRA 240

Query: 440 LHKFLDWAAQ 449
           L KFLD   Q
Sbjct: 241 LQKFLDEILQ 250

Chitin deacetylases (CDAs, EC 3.5.1.41) are secreted metalloproteins belonging to a family of extracellular chitin-modifying enzymes that catalyze the N-deacetylation of chitin, a beta-1,4-linked N-acetylglucosamine polymer, to form chitosan, a polymer of beta-(1,4)-linked d-glucosamine residues. CDAs have been isolated and characterized from various bacterial and fungal species and belong to the larger carbohydrate esterase 4 (CE4) superfamily. This family includes many CDA-like proteins mainly from insects, which contain a putative CDA-like catalytic domain similar to the catalytic NodB homology domain of CE4 esterases. In addition to the CDA-like domain, family members contain two additional domains, a chitin-binding peritrophin-A domain (ChBD) and a low-density lipoprotein receptor class A domain (LDLa), or have the ChBD domain but do not have the LDLa domain. Length = 269

>gnl\|CDD\|200597 cd10975, CE4_CDA_like_2, Putative catalytic domain of chitin deacetylase-like proteins	Back alignment and domain information

>gnl\|CDD\|200545 cd10919, CE4_CDA_like, Putative catalytic domain of chitin deacetylase-like proteins from insects and similar proteins	Back alignment and domain information

>gnl\|CDD\|200566 cd10941, CE4_PuuE_HpPgdA_like_2, Putative catalytic domain of uncharacterized prokaryotic polysaccharide deacetylases similar to bacterial PuuE allantoinases and Helicobacter pylori peptidoglycan deacetylase (HpPgdA)	Back alignment and domain information

>gnl\|CDD\|200598 cd10976, CE4_CDA_like_3, Putative catalytic domain of uncharacterized bacterial hypothetical proteins similar to insect chitin deacetylase-like proteins	Back alignment and domain information

>gnl\|CDD\|200596 cd10974, CE4_CDA_like_1, Putative catalytic domain of chitin deacetylase-like proteins with additional chitin-binding peritrophin-A domain (ChBD) and/or a low-density lipoprotein receptor class A domain (LDLa)	Back alignment and domain information

>gnl\|CDD\|216601 pfam01607, CBM_14, Chitin binding Peritrophin-A domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		620
TIGR03212		297	uraD_N-term-dom putative urate catabolism protein.	99.97
PRK15394		296	4-deoxy-4-formamido-L-arabinose-phosphoundecapreno	99.92
TIGR03006		265	pepcterm_polyde polysaccharide deactylase family p	99.9
TIGR02764		191	spore_ybaN_pdaB polysaccharide deacetylase family	99.89
TIGR02884		224	spore_pdaA delta-lactam-biosynthetic de-N-acetylas	99.87
PF01522		123	Polysacc_deac_1: Polysaccharide deacetylase; Inter	99.87
TIGR02873		268	spore_ylxY probable sporulation protein, polysacch	99.85
COG0726		267	CDA1 Predicted xylanase/chitin deacetylase [Carboh	99.75
PRK14581		672	hmsF outer membrane N-deacetylase; Provisional	99.52
PRK14582		671	pgaB outer membrane N-deacetylase; Provisional	99.49
PF10096		243	DUF2334: Uncharacterized protein conserved in bact	97.78
COG3233		233	Predicted deacetylase [General function prediction	97.59
PF09960		585	DUF2194: Uncharacterized protein conserved in bact	97.39
PF03065		360	Glyco_hydro_57: Glycosyl hydrolase family 57; Inte	95.02
PF11959		133	DUF3473: Domain of unknown function (DUF3473); Int	91.51
PF01607		53	CBM_14: Chitin binding Peritrophin-A domain; Inter	90.13
COG1449		615	Alpha-amylase/alpha-mannosidase [Carbohydrate tran	85.88
PF04748		213	Polysacc_deac_2: Divergent polysaccharide deacetyl	84.73
COG2861		250	Uncharacterized protein conserved in bacteria [Fun	82.98
smart00494		56	ChtBD2 Chitin-binding domain type 2.	82.18

>TIGR03212 uraD_N-term-dom putative urate catabolism protein	Back alignment and domain information

Probab=99.97  E-value=1e-30  Score=271.66  Aligned_cols=199  Identities=14%  Similarity=0.209  Sum_probs=161.4

Q ss_pred             EeCCCCCCcHHHHHHHHhcccCCCCCCCceEEEEEcccC--CCHHHHHHHHHcCCeeeeccccCccCCCCCCHHHHHHHH
Q psy1562         209 FDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEY--SDYSMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEM  286 (620)
Q Consensus       209 FDDG~~~~~~~~~ldIL~~~RkNpNGC~IkATFFVsg~~--tny~lVreL~~~GHEIAsHT~sH~~~ls~lS~ee~~~EI  286 (620)
                      +|.|.....++ ++++|++       .+||||||+++..  .++++|++|.++|||||+||++|.. +..++.+++++||
T Consensus        71 ~~YG~rvG~~R-iLdlL~~-------~gv~aTffv~g~~~e~~P~~v~~i~~~GHEIg~Hg~~H~~-~~~ls~~~e~~~i  141 (297)
T TIGR03212        71 YEYGSRAGFWR-LLRLFTE-------RGIPVTVFGVAMALARNPEAVAAMKEAGWEIASHGLRWID-YQDMDEAQEREHI  141 (297)
T ss_pred             hhhcchhCHHH-HHHHHHH-------cCCCEEEEeEHHHHHHCHHHHHHHHHcCCEEeeccccCcc-cccCCHHHHHHHH
Confidence            78899988655 6799986       2699999999985  5699999999999999999999985 5789999999999


Q ss_pred             HHHHHHHHHhcCCCCCCceEeeCCCCCCChhHHHHHHHH-cCCeEEeeccCCCCCCCCCcccccCCCCCCccCCCCCCCC
Q psy1562         287 IGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEVVED-FGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKS  365 (620)
Q Consensus       287 ~gsreiLe~~tGIp~~~I~GfRaP~L~~s~dt~l~~L~e-~Gf~YDSSi~~d~~~~P~WPYTLDyg~p~~C~~~pCpt~s  365 (620)
                      .++.++|++++|++   ++|||++  ..+.+ ++++|++ .||+||||+..+  +.   ||-+...             .
T Consensus       142 ~~s~~~i~~~tG~~---P~G~~~~--~~s~~-T~~LL~e~~Gf~Y~sd~~~d--D~---Py~~~~~-------------~  197 (297)
T TIGR03212       142 AEAIRLHTEVTGER---PLGWYTG--RTSPN-TRRLVAEEGGFLYDADSYAD--DL---PYWDEVA-------------G  197 (297)
T ss_pred             HHHHHHHHHHhCCC---CceEECC--CCChh-HHHHHHHhcCceEeCchhhc--CC---CeEeecC-------------C
Confidence            99999999999975   6899974  66765 4899998 999999999986  33   4443211             1


Q ss_pred             CCCEEEEccccccccCcCCCCccccccccCCCCCHHHHHHHHHHHHHHHHhcCC---ceEEeecCCccCCchHHHHHHHH
Q psy1562         366 FPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNK---APYMMPFHTNWFQIKELEQGLHK  442 (620)
Q Consensus       366 ~pGLWEVPm~~~~~dd~~Gg~c~~mD~c~~~~~s~dev~e~L~~nFDr~YegNR---APf~I~lHp~wlg~p~ri~aLer  442 (620)
                       ..+++||++... +|+.   +.+.    ....++++++++|+++||.+|+..+   ..|.|.+||.++|+|+|+++|++
T Consensus       198 -~~~l~lP~~~~~-nD~~---~~~~----~~~~~~~~~~~~~~d~fd~l~~eg~~~~~~~~i~lHp~i~G~p~R~~~L~~  268 (297)
T TIGR03212       198 -RPQLIVPYTLDA-NDMR---FATP----QGFNTGEQFFTYLRDAFDVLYAEGEGAPKMMSIGLHCRLVGRPGRIAALQR  268 (297)
T ss_pred             -CCeEEEeccccc-CcHH---HHhc----cCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEecCccccCCHHHHHHHHH
Confidence             126779998643 4531   1111    1235789999999999999998432   36999999999999999999999


Q ss_pred             HHHHHHh
Q psy1562         443 FLDWAAQ  449 (620)
Q Consensus       443 FLdyI~s  449 (620)
                      ||+||++
T Consensus       269 ~l~~i~~  275 (297)
T TIGR03212       269 FLDYVQS  275 (297)
T ss_pred             HHHHHHh
Confidence            9999999

This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.

>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional	Back alignment and domain information

>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily	Back alignment and domain information

>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB	Back alignment and domain information

>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase	Back alignment and domain information

>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase	Back alignment and domain information

>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family	Back alignment and domain information

>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK14581 hmsF outer membrane N-deacetylase; Provisional	Back alignment and domain information

>PRK14582 pgaB outer membrane N-deacetylase; Provisional	Back alignment and domain information

>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function	Back alignment and domain information

>COG3233 Predicted deacetylase [General function prediction only]	Back alignment and domain information

>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein	Back alignment and domain information

>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3	Back alignment and domain information

>PF11959 DUF3473: Domain of unknown function (DUF3473); InterPro: IPR022560 This domain, found in bacteria and archaea, is functionally uncharacterised	Back alignment and domain information

>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []	Back alignment and domain information

>COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ	Back alignment and domain information

>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>smart00494 ChtBD2 Chitin-binding domain type 2	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		620
1dqc_A		74	Tachycitin; disulfide-rich, antimicrobial protein;	2e-06
3qbu_A		326	Putative uncharacterized protein; metallo enzyme,	9e-06

>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1 Length = 74	Back alignment and structure

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 478 CSK---CVDHHPYVSLCPSGLYFDDIKKLCTFKNEARCGPLPTS 518
           C     C      +  CP GL+++   K+C + ++A C  +   
Sbjct: 24  CCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAGCTSVNKE 67

PyMOL of 1dqc

>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori} Length = 326	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		620
3qbu_A		326	Putative uncharacterized protein; metallo enzyme,	100.0
3s6o_A		321	Polysaccharide deacetylase family protein; ssgcid,	100.0
3rxz_A		300	Polysaccharide deacetylase; structural genomics, P	100.0
3cl6_A		308	PUUE allantoinase; URIC acid, nitrogen fixation, h	100.0
2y8u_A		230	Chitin deacetylase; hydrolase; 1.99A {Emericella n	99.89
1ny1_A		240	Probable polysaccharide deacetylase PDAA; structur	99.88
2vyo_A		254	ECU11_0510, chitooligosaccharide deacetylase; CE4	99.88
2w3z_A		311	Putative deacetylase; PGDA, glcnac DE-N-acetylase,	99.88
2cc0_A		195	Acetyl-xylan esterase; hydrolase, carbohydrate est	99.88
2j13_A		247	Polysaccharide deacetylase; family 4, peptidoglyca	99.87
2c71_A		216	Glycoside hydrolase, family 11\:clostridium cellul	99.87
2iw0_A		254	Chitin deacetylase; hydrolase, chitin DE-N-acetyla	99.85
2c1i_A		431	Peptidoglycan glcnac deacetylase; carbohydrate est	99.83
3hft_A		257	WBMS, polysaccharide deacetylase involved in O-AN	99.81
3vus_A		268	Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas;	99.72
4f9d_A		618	Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas;	99.58
4hd5_A		360	Polysaccharide deacetylase; TIM barrel, hydrolase;	99.56
2b5d_X		528	Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.	96.58
1k1x_A		659	4-alpha-glucanotransferase; 2.40A {Thermococcus li	96.45
3n98_A		562	Alpha-amylase, GH57 family; GH57 family member, br	96.0
1dqc_A		74	Tachycitin; disulfide-rich, antimicrobial protein;	92.63
3p0b_A		540	TT1467 protein; glycoside hydrolase GH57, glycogen	91.67
2qv5_A		261	AGR_C_5032P, uncharacterized protein ATU2773; stru	88.25
2nly_A		245	BH1492 protein, divergent polysaccharide deacetyla	87.76

>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori}	Back alignment and structure

Probab=100.00  E-value=3.6e-43  Score=364.36  Aligned_cols=239  Identities=14%  Similarity=0.190  Sum_probs=202.5

Q ss_pred             HHHHHHHHhcccCCCCCCCceEEEEEcccC--CCHHHHHHHHHcCCeeeeccccCccCCCCCCHHHHHHHHHHHHHHHHH
Q psy1562         218 YDHYQKVFSDSRKNPNGCPMKGTFFISHEY--SDYSMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHH  295 (620)
Q Consensus       218 ~~~~ldIL~~~RkNpNGC~IkATFFVsg~~--tny~lVreL~~~GHEIAsHT~sH~~~ls~lS~ee~~~EI~gsreiLe~  295 (620)
                      +..++++|++       .++||||||++..  .++++|++|+++|||||+||++|.. +..++.+++++||.+++++|++
T Consensus        76 ~~rlL~lL~~-------~~v~aTfFv~g~~~~~~p~~v~~i~~~GhEIg~H~~~H~~-~~~~s~~~~~~ei~~~~~~l~~  147 (326)
T 3qbu_A           76 IPRLLKLFKK-------YHLPATWFVPGHSIETFPEQMKMIVDAGHEVGAHGYSHEN-PIAMSTKQEEDVLLKSVELIKD  147 (326)
T ss_dssp             HHHHHHHHHH-------TTCCCEEECCHHHHHHCHHHHHHHHTTTCEEEBCCSSCCC-GGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-------cCCCEEEEEEhHHhhhCHHHHHHHHHcCCEEEeCCCCCcC-hhhCCHHHHHHHHHHHHHHHHH
Confidence            4567899985       2599999999886  4689999999999999999999985 5789999999999999999999


Q ss_pred             hcCCCCCCceEeeCCCCCCChhHHHHHHHHcCCeEEeeccCCCCC-CCCCccc------ccCCCCCCccCCCCCCCCCCC
Q psy1562         296 FANITRSDIVGMRAPFLLPGRNTQFEVVEDFGFIYDSSVSVPALK-FPVWPYT------LDHKIPHECKSGTCPTKSFPG  368 (620)
Q Consensus       296 ~tGIp~~~I~GfRaP~L~~s~dt~l~~L~e~Gf~YDSSi~~d~~~-~P~WPYT------LDyg~p~~C~~~pCpt~s~pG  368 (620)
                      ++|.+   ++|||+|++..+. .++++|+++||+||||+..+  + .|+|+++      +||..++.|++.||..++.+|
T Consensus       148 ~~G~~---p~~fr~P~g~~~~-~~~~~l~e~G~~ydss~~~~--D~~Py~~~~~~~~~~~d~~~~~~~w~~P~~~g~~~~  221 (326)
T 3qbu_A          148 LTGKA---PTGYVAPWWEFSN-ITNELLLKHGFKYDHSLMHN--DFTPYYVRVGDSWSKIDYSLEAKDWMKPLIRGVETN  221 (326)
T ss_dssp             HHSSC---CCEECCGGGCCSS-HHHHHHHTTTCCEECCCCSC--SSSCEEEEECCBCCCCCTTSCGGGTCCCCBCCEEEE
T ss_pred             HHCCC---CcEEECCCCCCCH-HHHHHHHHcCCEEEeeccCC--CCCCeeeecCCccccccccccchhhcccccCCCCCC
Confidence            99965   6899999999995 56999999999999999875  4 6788776      788888999999998776688


Q ss_pred             EEEEccccccccCcCCCCccccccc--cCCCCCHHHHHHHHHHHHHHHHh-cCCceEEeecCCccCCchHHHHHHHHHHH
Q psy1562         369 VWEVPLNAHFVESYEGGHCPYLDQC--VLHNHDSDEVLEWLKEDFNKYYT-QNKAPYMMPFHTNWFQIKELEQGLHKFLD  445 (620)
Q Consensus       369 LWEVPm~~~~~dd~~Gg~c~~mD~c--~~~~~s~dev~e~L~~nFDr~Ye-gNRAPf~I~lHp~wlg~p~ri~aLerFLd  445 (620)
                      |||||++... +|++...  +.+.+  ..+..++++++++|+++||++|+ ++|++|+|++|+.++|++.|+++|++||+
T Consensus       222 l~eiP~~~~~-~D~p~~~--f~~~~~~~~g~~~~~~~~~~l~~~Fd~~y~~~~~~~~~i~lH~~~~g~p~r~~~le~fl~  298 (326)
T 3qbu_A          222 LVEIPANWYL-DDLPPMM--FIKKSPNSFGFVSPRDIGQMWIDQFDWVYREMDYAVFSMTIHPDVSARPQVLLMHEKIIE  298 (326)
T ss_dssp             EEECCCCGGG-BSHHHHC--CCTTCTTCCCCSCHHHHHHHHHHHHHHHHHHCSEEEEEEEECHHHHTSHHHHHHHHHHHH
T ss_pred             eEEEcCcccc-Ccchhhh--ccccccCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEEECccccCCHHHHHHHHHHHH
Confidence            9999998533 4432111  11111  11347899999999999999999 46899999999999999999999999999


Q ss_pred             HHHhcCCCCCCCCcccccccCCCCcceecCCCccccccCCCccccCCCCcchhhhhhhhhcccccccCCCCCCCCCEEEE
Q psy1562         446 WAAQNTLHDAIPHQLVPNQRAGTGTTQVLGLGCSKCVDHHPYVSLCPSGLYFDDIKKLCTFKNEARCGPLPTSKPDVWFV  525 (620)
Q Consensus       446 yI~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dV~~V  525 (620)
                      ||++                                                                     ++|||||
T Consensus       299 ~i~~---------------------------------------------------------------------~~~Vw~~  309 (326)
T 3qbu_A          299 HINK---------------------------------------------------------------------HEGVRWV  309 (326)
T ss_dssp             HHTT---------------------------------------------------------------------STTEEEC
T ss_pred             HHHh---------------------------------------------------------------------CCCEEEE
Confidence            9998                                                                     8999999


Q ss_pred             eHHHHHHhhcCCcchhh
Q psy1562         526 TITQALTWMTNPKSSKE  542 (620)
Q Consensus       526 t~~q~l~Wm~nP~~~~~  542 (620)
                      |.+|+++||+++.|.++
T Consensus       310 t~~eia~~~~~~~p~~~  326 (326)
T 3qbu_A          310 TFNEIADDFLKRNPRKK  326 (326)
T ss_dssp             CHHHHHHHHHHHSCC--
T ss_pred             cHHHHHHHHHhhCCCCC
Confidence            99999999998887653

PyMOL of 3qbu

>3s6o_A Polysaccharide deacetylase family protein; ssgcid, NIH, structural genomics, seattle structural genomic for infectious disease; 1.85A {Burkholderia pseudomallei} SCOP: c.6.2.6	Back alignment and structure

>3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, carbohydrate esterase family 4; 2.01A {Mycobacterium smegmatis}	Back alignment and structure

>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A	Back alignment and structure

>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}	Back alignment and structure

>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1	Back alignment and structure

>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi}	Back alignment and structure

>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159}	Back alignment and structure

>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3	Back alignment and structure

>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3	Back alignment and structure

>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A	Back alignment and structure

>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3	Back alignment and structure

>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase, peptidoglycan deacetylase, metalloenzyme, D275N mutant, hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae} SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A	Back alignment and structure

>3hft_A WBMS, polysaccharide deacetylase involved in O-AN biosynthesis; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Bordetella bronchiseptica}	Back alignment and structure

>3vus_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; deacetyl hydrolase; 1.65A {Escherichia coli}	Back alignment and structure

>4f9d_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; family 4 carbohydrate esterase, TIM barrel, hydrolase, deace carbohydrate/sugar binding; HET: MES; 1.90A {Escherichia coli} PDB: 4f9j_A*	Back alignment and structure

>4hd5_A Polysaccharide deacetylase; TIM barrel, hydrolase; 1.90A {Bacillus cereus}	Back alignment and structure

>2b5d_X Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.20A {Thermotoga maritima} SCOP: a.8.3.3 c.6.2.4	Back alignment and structure

>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A*	Back alignment and structure

>3n98_A Alpha-amylase, GH57 family; GH57 family member, branching enzyme, transferase; HET: BGC PG4; 1.87A {Thermococcus kodakarensis} PDB: 3n92_A* 3n8t_A*	Back alignment and structure

>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1	Back alignment and structure

>3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A	Back alignment and structure

>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}	Back alignment and structure

>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		620
d1dqca_		73	g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachyple	2e-04

>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} Length = 73	Back information, alignment and structure


class: Small proteins
fold: Invertebrate chitin-binding proteins
superfamily: Invertebrate chitin-binding proteins
family: Tachycitin
domain: Tachycitin
species: Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 478 CSK---CVDHHPYVSLCPSGLYFDDIKKLCTFKNEARCG 513
           C     C      +  CP GL+++   K+C + ++A C 
Sbjct: 24  CCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAGCT 62

PyMOL of d1dqca_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		620
d1z7aa1		301	Hypothetical protein PA1517 {Pseudomonas aeruginos	99.97
d2iw0a1		220	Chitin deacetylase {Bean anthracnose fungus (Colle	99.9
d2c71a1		204	Xylanase XynA C-terminal domain {Clostridium therm	99.87
d1ny1a_		235	Probable polysaccharide deacetylase PdaA {Bacillus	99.86
d2cc0a1		192	Acetyl-xylan esterase {Streptomyces lividans [TaxI	99.86
d2j13a1		235	Putative polysaccharide deacetylase BA0424 {Bacill	99.85
d2c1ia1		196	Peptidoglycan GlcNAc deacetylase C-terminal domain	99.83
d1k1xa3		310	4-alpha-glucanotransferase, N-terminal domain {Arc	97.37
d1ufaa2		412	Hypothetical protein TT1467, N-terminal domain {Th	94.92
d2b5dx2		404	Alpha-amylase AmyC {Thermotoga maritima [TaxId: 23	94.44
d1dqca_		73	Tachycitin {Horseshoe crab (Tachypleus tridentatus	93.95
d2nlya1		224	Hypothetical protein BH1492 {Bacillus halodurans [	87.52

>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: PA1517-like
domain: Hypothetical protein PA1517
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=5.3e-31  Score=269.71  Aligned_cols=202  Identities=18%  Similarity=0.263  Sum_probs=161.1

Q ss_pred             EeCCCCCCcHHHHHHHHhcccCCCCCCCceEEEEEcccC--CCHHHHHHHHHcCCeeeeccccCccCCCCCCHHHHHHHH
Q psy1562         209 FDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEY--SDYSMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEM  286 (620)
Q Consensus       209 FDDG~~~~~~~~~ldIL~~~RkNpNGC~IkATFFVsg~~--tny~lVreL~~~GHEIAsHT~sH~~~ls~lS~ee~~~EI  286 (620)
                      ++.|...+.+ .++++|++       .+||+||||++..  ..+++|+++.++|||||+||+.|.. ...++.++++++|
T Consensus        72 ~~YG~rvG~~-Rll~ll~~-------~~i~aTff~~g~~ae~~P~~v~~i~~~GhEi~~HG~~h~~-~~~l~~~~e~~~i  142 (301)
T d1z7aa1          72 YEYGSRAGVW-RLLKLFKR-------RNVPLTVFAVAMAAQRNPEVIRAMVADGHEICSHGYRWID-YQYMDEAQEREHM  142 (301)
T ss_dssp             HHHHHHTHHH-HHHHHHHH-------TTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECCSSSSC-CTTCCHHHHHHHH
T ss_pred             hhhhhhcchH-HHHHHHHH-------hCCCcccchhHHHHHHChHHHHHHHHcCceeecCcccccc-cccCCHHHHHHHH
Confidence            5667766644 45689986       2599999999985  4699999999999999999999986 4789999999999


Q ss_pred             HHHHHHHHHhcCCCCCCceEeeCCCCCCChhHHHHHHHHcCCeEEeeccCCCCCCCCCcccccCCCCCCccCCCCCCCCC
Q psy1562         287 IGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEVVEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSF  366 (620)
Q Consensus       287 ~gsreiLe~~tGIp~~~I~GfRaP~L~~s~dt~l~~L~e~Gf~YDSSi~~d~~~~P~WPYTLDyg~p~~C~~~pCpt~s~  366 (620)
                      .++.++|++++|..   ++|||+|.++.. + +..+|+++||+||||++.+  +.|+|   +...            ...
T Consensus       143 ~~~~~~l~~~tG~~---p~G~~~p~~~~~-~-t~~lL~e~Gf~Y~sd~~~d--D~Py~---~~~~------------~~~  200 (301)
T d1z7aa1         143 LEAIRILTELTGQR---PVGWYTGRTGPN-T-RRLVMEEGGFLYDSDTYDD--DLPYW---DPAS------------TAE  200 (301)
T ss_dssp             HHHHHHHHHHHSSC---CCEECCSSCCTT-H-HHHHHHHCCCSEECCCCCC--SSCEE---CTTC------------CSS
T ss_pred             HHHHHHHHHhccCC---cccccCCCCCCc-c-HHHHHHhcCCEEECCCCCC--CCccc---eecc------------CCC
Confidence            99999999999964   689999998753 4 4779999999999999976  34554   2110            112


Q ss_pred             CCEEEEccccccccCcCCCCccccccccCCCCCHHHHHHHHHHHHHHHHhc-CCc--eEEeecCCccCCchHHHHHHHHH
Q psy1562         367 PGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQ-NKA--PYMMPFHTNWFQIKELEQGLHKF  443 (620)
Q Consensus       367 pGLWEVPm~~~~~dd~~Gg~c~~mD~c~~~~~s~dev~e~L~~nFDr~Yeg-NRA--Pf~I~lHp~wlg~p~ri~aLerF  443 (620)
                      .++++||+.... +|+.     ++.  .....+++++++.++++||+.|+. .++  -|.|.+||..+|+|+|+.+|++|
T Consensus       201 ~~~l~iP~~~~~-~D~~-----~~~--~~~~~~~~~~~~~~~d~fd~l~~e~~~~~~~~~l~lHP~i~G~P~Ri~~Le~~  272 (301)
T d1z7aa1         201 KPHLVIPYTLDT-NDMR-----FTQ--VQGFNNGEQFFQYLKDAFDVLYEEGATAPKMLSIGLHCRLIGRPARMAALERF  272 (301)
T ss_dssp             SCCEECCCCSSS-BGGG-----GGS--TTCCSSHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEETTTTTSHHHHHHHHHH
T ss_pred             CCeEEecccccc-chhh-----hhh--cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeeCCcccCCHHHHHHHHHH
Confidence            359999997643 3321     111  112467889999999999999973 333  59999999999999999999999


Q ss_pred             HHHHHh
Q psy1562         444 LDWAAQ  449 (620)
Q Consensus       444 LdyI~s  449 (620)
                      |+||++
T Consensus       273 l~~i~~  278 (301)
T d1z7aa1         273 IQYAQS  278 (301)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            999999

PyMOL of d1z7aa1

>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}	Back information, alignment and structure

>d2c71a1 c.6.2.3 (A:480-683) Xylanase XynA C-terminal domain {Clostridium thermocellum [TaxId: 1515]}	Back information, alignment and structure

>d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces lividans [TaxId: 1916]}	Back information, alignment and structure

>d2j13a1 c.6.2.3 (A:1-235) Putative polysaccharide deacetylase BA0424 {Bacillus anthracis [TaxId: 1392]}	Back information, alignment and structure

>d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}	Back information, alignment and structure

>d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}	Back information, alignment and structure

>d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure