Psyllid ID: psy15639

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
PKSDKPAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRAQPVLSQNSTDSLLDVPVLEALQRRHSDVKIGSANSGAHPANQGLAPPRSPELRRHSDVSPASLKELE
Secondary Structure (PSIPRED)
cccccccccccccHHHccccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHccccccccccHHHHHcHHcHcccccccccccccccccEEHHHHHHHcccccccccccccccHcccHHHHHHHHHHcccEccccccccccccccccccccHHHcccccccHccHHHcc
Coil and Loop (DISEMBL)
pksdkpaarlgncrvclksfkpddysrvcYECHQKVCEdcasyskldenqdentwrCSICRRklqsraqpvlsqnstdslldvpVLEALQRRhsdvkigsansgahpanqglapprspelrrhsdvspaslkele
Flexible Loop (DISEMBL)
pksdkpaarlgncrvclksfkpddYSRVCYECHQKVCEDCASyskldenqdenTWRCSICRRKLqsraqpvlsqnstdslldVPVLEALQRRHSDVKIgsansgahpanqglapprspelrrhsdvspaslkele
Low Complexity Region (SEG)
PKSDKPAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRAQPVLSQNSTDSLLDVPVLEALQRRHSDVKIGSANSGAHPANQGLAPPRSPELRRHSDVSPASLKELE
Disordered region (IsUnstruct)
*********LGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRK************************************************************************
Disordered Region (DISOPRED)
*************RVCLKSFKPDDYSRVCYECHQKVCEDCASY**********TWRCSICRRKLQ*****************VPVLEA******************************************L****
Disordered Region (DISEMBL)
PKSDKPAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRAQPVLSQNSTDSLLDVPVLEALQRRHSDVKIGSANSG*******************************
Disordered Region (DISPRO)
***********NCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKL*E***ENTWRCSICRRKLQSRAQPVLSQNSTDSLLDVPVLEALQRRHSD*KI*************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
PKSDKPAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRAQPVLSQNSTDSLLDVPVLEALQRRHSDVKIGSANSGAHPANQGLAPPRSPELRRHSDVSPASLKELE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
195439804	655	GK12542 [Drosophila willistoni] gi|19416	0.977	0.201	0.696	4e-48
195015013	637	GH15180 [Drosophila grimshawi] gi|193897	0.955	0.202	0.712	7e-48
194749292	638	GF10241 [Drosophila ananassae] gi|190624	0.955	0.202	0.704	7e-48
195126895	643	GI12119 [Drosophila mojavensis] gi|19391	0.955	0.200	0.712	8e-48
24656228	643	CG43955, isoform G [Drosophila melanogas	0.955	0.200	0.704	9e-48
350529456	643	MIP32626p1 [Drosophila melanogaster]	0.955	0.200	0.704	9e-48
195587276	642	GD13376 [Drosophila simulans] gi|1941954	0.955	0.200	0.704	9e-48
195336942	642	GM14108 [Drosophila sechellia] gi|194128	0.955	0.200	0.704	9e-48
194865194	647	GG14502 [Drosophila erecta] gi|190653091	0.955	0.199	0.704	9e-48
195492900	646	GE21693 [Drosophila yakuba] gi|194180290	0.955	0.199	0.704	1e-47

>gi|195439804|ref|XP_002067749.1| GK12542 [Drosophila willistoni] gi|194163834|gb|EDW78735.1| GK12542 [Drosophila willistoni]

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 94/135 (69%), Positives = 108/135 (80%), Gaps = 3/135 (2%)

Query: 2   KSDKPAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICR 61
           K  +P  R G CRVCLKSFKPDDY + C+EC Q+VCEDCASYSKLDE++D   WRCS+CR
Sbjct: 116 KQQEPGRRAGACRVCLKSFKPDDYHKTCFECQQRVCEDCASYSKLDEHEDATMWRCSVCR 175

Query: 62  RKLQSRAQPVLSQNSTDSLLDVPVLEALQRRHSDVKIGSANSGAHPAN-QGLAPPRSPEL 120
           RK+ SR    + Q+STDS+LDVPVLEALQRRHSD K+GS+     P+N   LAPPRSPEL
Sbjct: 176 RKMASRV--CIPQDSTDSMLDVPVLEALQRRHSDAKLGSSTQTLAPSNGAALAPPRSPEL 233

Query: 121 RRHSDVSPASLKELE 135
           RRHSDVSPASLKELE
Sbjct: 234 RRHSDVSPASLKELE 248

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195015013|ref|XP_001984121.1| GH15180 [Drosophila grimshawi] gi|193897603|gb|EDV96469.1| GH15180 [Drosophila grimshawi]

 Score =  194 bits (494), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 94/132 (71%), Positives = 107/132 (81%), Gaps = 3/132 (2%)

Query: 5   KPAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKL 64
           +P  R G CRVCLKSFKPDDY + C+EC Q+VCEDCASYSKLDE++D N WRCS+CRRK+
Sbjct: 118 EPGRRAGACRVCLKSFKPDDYHKTCFECQQRVCEDCASYSKLDEHEDANMWRCSVCRRKM 177

Query: 65  QSRAQPVLSQNSTDSLLDVPVLEALQRRHSDVKIGSANSGAHPAN-QGLAPPRSPELRRH 123
            SR    + Q+STDS LDVPVLEALQRRHSD K+GS+     P+N   LAPPRSPELRRH
Sbjct: 178 ASRV--CIPQDSTDSTLDVPVLEALQRRHSDAKLGSSTQTLAPSNGAALAPPRSPELRRH 235

Query: 124 SDVSPASLKELE 135
           SDVSPASLKELE
Sbjct: 236 SDVSPASLKELE 247

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194749292|ref|XP_001957073.1| GF10241 [Drosophila ananassae] gi|190624355|gb|EDV39879.1| GF10241 [Drosophila ananassae]

 Score =  194 bits (494), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 107/132 (81%), Gaps = 3/132 (2%)

Query: 5   KPAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKL 64
           +P  R G CRVCLKSFKPDDY + C+EC Q+VCEDCASYSKLDE++D   WRCS+CRRK+
Sbjct: 120 EPGRRAGACRVCLKSFKPDDYHKTCFECQQRVCEDCASYSKLDEHEDATMWRCSVCRRKM 179

Query: 65  QSRAQPVLSQNSTDSLLDVPVLEALQRRHSDVKIGSANSGAHPAN-QGLAPPRSPELRRH 123
            SR    + Q+STDS+LDVPVLEALQRRHSD K+GS+     P+N   LAPPRSPELRRH
Sbjct: 180 ASRV--CIPQDSTDSMLDVPVLEALQRRHSDAKLGSSTQTLAPSNGAALAPPRSPELRRH 237

Query: 124 SDVSPASLKELE 135
           SDVSPASLKELE
Sbjct: 238 SDVSPASLKELE 249

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195126895|ref|XP_002007904.1| GI12119 [Drosophila mojavensis] gi|193919513|gb|EDW18380.1| GI12119 [Drosophila mojavensis]

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 94/132 (71%), Positives = 107/132 (81%), Gaps = 3/132 (2%)

Query: 5   KPAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKL 64
           +P  R G CRVCLKSFKPDDY + C+EC Q+VCEDCASYSKLDE++D N WRCS+CRRK+
Sbjct: 124 EPGRRAGACRVCLKSFKPDDYHKTCFECQQRVCEDCASYSKLDEHEDANMWRCSVCRRKM 183

Query: 65  QSRAQPVLSQNSTDSLLDVPVLEALQRRHSDVKIGSANSGAHPAN-QGLAPPRSPELRRH 123
            SR    + Q+STDS LDVPVLEALQRRHSD K+GS+     P+N   LAPPRSPELRRH
Sbjct: 184 ASRV--CIPQDSTDSTLDVPVLEALQRRHSDAKLGSSTQTLAPSNGAALAPPRSPELRRH 241

Query: 124 SDVSPASLKELE 135
           SDVSPASLKELE
Sbjct: 242 SDVSPASLKELE 253

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24656228|ref|NP_647742.1| CG43955, isoform G [Drosophila melanogaster] gi|442629798|ref|NP_001261339.1| CG43955, isoform F [Drosophila melanogaster] gi|23092853|gb|AAF47680.2| CG43955, isoform G [Drosophila melanogaster] gi|440215214|gb|AGB94034.1| CG43955, isoform F [Drosophila melanogaster]

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 107/132 (81%), Gaps = 3/132 (2%)

Query: 5   KPAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKL 64
           +P  R G CRVCLKSFKPDDY + C+EC Q+VCEDCASYSKLDE++D   WRCS+CRRK+
Sbjct: 124 EPGRRAGACRVCLKSFKPDDYHKTCFECQQRVCEDCASYSKLDEHEDATMWRCSVCRRKM 183

Query: 65  QSRAQPVLSQNSTDSLLDVPVLEALQRRHSDVKIGSANSGAHPAN-QGLAPPRSPELRRH 123
            SR    + Q+STDS+LDVPVLEALQRRHSD K+GS+     P+N   LAPPRSPELRRH
Sbjct: 184 ASRV--CIPQDSTDSMLDVPVLEALQRRHSDAKLGSSTQTLAPSNGAALAPPRSPELRRH 241

Query: 124 SDVSPASLKELE 135
           SDVSPASLKELE
Sbjct: 242 SDVSPASLKELE 253

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350529456|gb|AEQ28954.1| MIP32626p1 [Drosophila melanogaster]

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 107/132 (81%), Gaps = 3/132 (2%)

Query: 5   KPAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKL 64
           +P  R G CRVCLKSFKPDDY + C+EC Q+VCEDCASYSKLDE++D   WRCS+CRRK+
Sbjct: 124 EPGRRAGACRVCLKSFKPDDYHKTCFECQQRVCEDCASYSKLDEHEDATMWRCSVCRRKM 183

Query: 65  QSRAQPVLSQNSTDSLLDVPVLEALQRRHSDVKIGSANSGAHPAN-QGLAPPRSPELRRH 123
            SR    + Q+STDS+LDVPVLEALQRRHSD K+GS+     P+N   LAPPRSPELRRH
Sbjct: 184 ASRV--CIPQDSTDSMLDVPVLEALQRRHSDAKLGSSTQTLAPSNGAALAPPRSPELRRH 241

Query: 124 SDVSPASLKELE 135
           SDVSPASLKELE
Sbjct: 242 SDVSPASLKELE 253

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195587276|ref|XP_002083391.1| GD13376 [Drosophila simulans] gi|194195400|gb|EDX08976.1| GD13376 [Drosophila simulans]

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 107/132 (81%), Gaps = 3/132 (2%)

Query: 5   KPAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKL 64
           +P  R G CRVCLKSFKPDDY + C+EC Q+VCEDCASYSKLDE++D   WRCS+CRRK+
Sbjct: 123 EPGRRAGACRVCLKSFKPDDYHKTCFECQQRVCEDCASYSKLDEHEDATMWRCSVCRRKM 182

Query: 65  QSRAQPVLSQNSTDSLLDVPVLEALQRRHSDVKIGSANSGAHPAN-QGLAPPRSPELRRH 123
            SR    + Q+STDS+LDVPVLEALQRRHSD K+GS+     P+N   LAPPRSPELRRH
Sbjct: 183 ASRV--CIPQDSTDSMLDVPVLEALQRRHSDAKLGSSTQTLAPSNGAALAPPRSPELRRH 240

Query: 124 SDVSPASLKELE 135
           SDVSPASLKELE
Sbjct: 241 SDVSPASLKELE 252

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195336942|ref|XP_002035092.1| GM14108 [Drosophila sechellia] gi|194128185|gb|EDW50228.1| GM14108 [Drosophila sechellia]

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 107/132 (81%), Gaps = 3/132 (2%)

Query: 5   KPAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKL 64
           +P  R G CRVCLKSFKPDDY + C+EC Q+VCEDCASYSKLDE++D   WRCS+CRRK+
Sbjct: 123 EPGRRAGACRVCLKSFKPDDYHKTCFECQQRVCEDCASYSKLDEHEDATMWRCSVCRRKM 182

Query: 65  QSRAQPVLSQNSTDSLLDVPVLEALQRRHSDVKIGSANSGAHPAN-QGLAPPRSPELRRH 123
            SR    + Q+STDS+LDVPVLEALQRRHSD K+GS+     P+N   LAPPRSPELRRH
Sbjct: 183 ASRV--CIPQDSTDSMLDVPVLEALQRRHSDAKLGSSTQTLAPSNGAALAPPRSPELRRH 240

Query: 124 SDVSPASLKELE 135
           SDVSPASLKELE
Sbjct: 241 SDVSPASLKELE 252

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194865194|ref|XP_001971308.1| GG14502 [Drosophila erecta] gi|190653091|gb|EDV50334.1| GG14502 [Drosophila erecta]

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 107/132 (81%), Gaps = 3/132 (2%)

Query: 5   KPAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKL 64
           +P  R G CRVCLKSFKPDDY + C+EC Q+VCEDCASYSKLDE++D   WRCS+CRRK+
Sbjct: 128 EPGRRAGACRVCLKSFKPDDYHKTCFECQQRVCEDCASYSKLDEHEDATMWRCSVCRRKM 187

Query: 65  QSRAQPVLSQNSTDSLLDVPVLEALQRRHSDVKIGSANSGAHPAN-QGLAPPRSPELRRH 123
            SR    + Q+STDS+LDVPVLEALQRRHSD K+GS+     P+N   LAPPRSPELRRH
Sbjct: 188 ASRV--CIPQDSTDSMLDVPVLEALQRRHSDAKLGSSTQTLAPSNGAALAPPRSPELRRH 245

Query: 124 SDVSPASLKELE 135
           SDVSPASLKELE
Sbjct: 246 SDVSPASLKELE 257

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195492900|ref|XP_002094189.1| GE21693 [Drosophila yakuba] gi|194180290|gb|EDW93901.1| GE21693 [Drosophila yakuba]

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 107/132 (81%), Gaps = 3/132 (2%)

Query: 5   KPAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKL 64
           +P  R G CRVCLKSFKPDDY + C+EC Q+VCEDCASYSKLDE++D   WRCS+CRRK+
Sbjct: 127 EPGRRAGACRVCLKSFKPDDYHKTCFECQQRVCEDCASYSKLDEHEDATMWRCSVCRRKM 186

Query: 65  QSRAQPVLSQNSTDSLLDVPVLEALQRRHSDVKIGSANSGAHPAN-QGLAPPRSPELRRH 123
            SR    + Q+STDS+LDVPVLEALQRRHSD K+GS+     P+N   LAPPRSPELRRH
Sbjct: 187 ASRV--CIPQDSTDSMLDVPVLEALQRRHSDAKLGSSTQTLAPSNGAALAPPRSPELRRH 244

Query: 124 SDVSPASLKELE 135
           SDVSPASLKELE
Sbjct: 245 SDVSPASLKELE 256

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
FB|FBgn0264606	643	Fife "Fife" [Drosophila melano	0.955	0.200	0.704	7.7e-48
UNIPROTKB|J9P5X7	535	RIMS1 "Uncharacterized protein	0.377	0.095	0.283	0.00073

FB|FBgn0264606 Fife "Fife" [Drosophila melanogaster (taxid:7227)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 93/132 (70%), Positives = 107/132 (81%)

Query:     5 KPAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKL 64
             +P  R G CRVCLKSFKPDDY + C+EC Q+VCEDCASYSKLDE++D   WRCS+CRRK+
Sbjct:   124 EPGRRAGACRVCLKSFKPDDYHKTCFECQQRVCEDCASYSKLDEHEDATMWRCSVCRRKM 183

Query:    65 QSRAQPVLSQNSTDSLLDVPVLEALQRRHSDVKIGSANSGAHPAN-QGLAPPRSPELRRH 123
              SR    + Q+STDS+LDVPVLEALQRRHSD K+GS+     P+N   LAPPRSPELRRH
Sbjct:   184 ASRV--CIPQDSTDSMLDVPVLEALQRRHSDAKLGSSTQTLAPSNGAALAPPRSPELRRH 241

Query:   124 SDVSPASLKELE 135
             SDVSPASLKELE
Sbjct:   242 SDVSPASLKELE 253

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:2000809 "positive regulation of synaptic vesicle clustering" evidence=IMP

GO:0001956 "positive regulation of neurotransmitter secretion" evidence=IMP

GO:0048786 "presynaptic active zone" evidence=IDA

UNIPROTKB|J9P5X7 RIMS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 85 (35.0 bits), Expect = 0.00073, Sum P(2) = 0.00073
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query:    13 CRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENT--WRCSICRRK 63
             C +C K+   D    +C  C  K C  C     L  N ++    W C++CR++
Sbjct:   116 CGICHKTKFADGCGHLCSYCRTKFCARCGGRVSLRSNNEDKVVMWVCNLCRKQ 168

GO:0046872 "metal ion binding" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
PF02318	118	FYVE_2: FYVE-type zinc finger; InterPro: IPR003315	97.89
PF01363	69	FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc f	96.4
PF00628	51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	95.73
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	94.81
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	94.8
cd00065	57	FYVE FYVE domain; Zinc-binding domain; targets pro	94.63
smart00064	68	FYVE Protein present in Fab1, YOTB, Vac1, and EEA1	94.09
KOG2177|consensus	386		93.54
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	93.53
PF14634	44	zf-RING_5: zinc-RING finger domain	93.07
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	91.64
KOG3799|consensus	169		91.6
PF07649	30	C1_3: C1-like domain; InterPro: IPR011424 This sho	84.87
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	82.24
smart00396	71	ZnF_UBR1 Putative zinc finger in N-recognin, a rec	81.17
PHA02929	238	N1R/p28-like protein; Provisional	80.97

>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A

Probab=97.89  E-value=5.3e-06  Score=59.15  Aligned_cols=54  Identities=33%  Similarity=0.823  Sum_probs=41.7

Q ss_pred             CCCchhhccccCCCC-ccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhccc
Q psy15639         10 LGNCRVCLKSFKPDD-YSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRA   68 (135)
Q Consensus        10 ~g~CRVClKsfkP~e-~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~   68 (135)
                      ...|-.|.+.|..-. ..+.|.+|+++||-.|..|++     ....|.|.+|......+.
T Consensus        54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~-----~~~~WlC~vC~k~rel~~  108 (118)
T PF02318_consen   54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSK-----KEPIWLCKVCQKQRELKK  108 (118)
T ss_dssp             CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETS-----SSCCEEEHHHHHHHHHHH
T ss_pred             CcchhhhCCcccccCCCCCcCCcCCccccCccCCcCC-----CCCCEEChhhHHHHHHHH
Confidence            347999999987553 579999999999999999932     356899999998765443

The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.

>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.40  E-value=0.0011  Score=42.33  Aligned_cols=61  Identities=30%  Similarity=0.544  Sum_probs=37.9

Q ss_pred             CCCCCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCC----CCCCCceeehhhhhhhh
Q psy15639          5 KPAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDE----NQDENTWRCSICRRKLQ   65 (135)
Q Consensus         5 kp~~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~----~ed~~~WrCSvCRRK~~   65 (135)
                      +|......|.+|.|.|.--.-.|.|--|.+.||.+|.++.....    ......--|..|-.+++
T Consensus         4 ~~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~   68 (69)
T PF01363_consen    4 VPDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ   68 (69)
T ss_dssp             SSGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred             CCCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence            45667889999999998888889999999999999999876533    44445566777766654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.73  E-value=0.0026  Score=38.33  Aligned_cols=50  Identities=26%  Similarity=0.591  Sum_probs=42.1

Q ss_pred             chhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhh
Q psy15639         13 CRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRK   63 (135)
Q Consensus        13 CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK   63 (135)
                      |.||.+ ...++..-.|..|.+-+=..|..++..........|.|..|++|
T Consensus         2 C~vC~~-~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~~   51 (51)
T PF00628_consen    2 CPVCGQ-SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRPK   51 (51)
T ss_dssp             BTTTTS-SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHHC
T ss_pred             CcCCCC-cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcCc
Confidence            789998 67777788899999888889999988766665669999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=94.81  E-value=0.0023  Score=37.99  Aligned_cols=44  Identities=20%  Similarity=0.519  Sum_probs=32.3

Q ss_pred             CCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhh
Q psy15639         11 GNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICR   61 (135)
Q Consensus        11 g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCR   61 (135)
                      +.|-||+..|.+++...... |.|..|.+|..---..+      .+|.+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~------~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN------NSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS------SB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC------CcCCccC
Confidence            46999999999888777777 99999999964322111      2899987

...

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=94.80  E-value=0.0035  Score=38.23  Aligned_cols=45  Identities=27%  Similarity=0.720  Sum_probs=33.2

Q ss_pred             CCchhhccccCCCCccchhhhhhhh-hhcccccccCCCCCCCCCceeehhhhhhhh
Q psy15639         11 GNCRVCLKSFKPDDYSRVCYECHQK-VCEDCASYSKLDENQDENTWRCSICRRKLQ   65 (135)
Q Consensus        11 g~CRVClKsfkP~e~~~tC~eCqqk-VCEDCASYSkl~~~ed~~~WrCSvCRRK~~   65 (135)
                      ..|.||+..++.    .+-..|.|. +|.+|+.-...      +..+|.+||+++.
T Consensus         3 ~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~------~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    3 EECPICFENPRD----VVLLPCGHLCFCEECAERLLK------RKKKCPICRQPIE   48 (50)
T ss_dssp             SB-TTTSSSBSS----EEEETTCEEEEEHHHHHHHHH------TTSBBTTTTBB-S
T ss_pred             CCCccCCccCCc----eEEeCCCChHHHHHHhHHhcc------cCCCCCcCChhhc
Confidence            579999997543    455679999 99999865433      6789999998875

...

>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;

Probab=94.63  E-value=0.025  Score=34.55  Aligned_cols=51  Identities=22%  Similarity=0.481  Sum_probs=39.5

Q ss_pred             CCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCC--CCCCceeehhh
Q psy15639         10 LGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDEN--QDENTWRCSIC   60 (135)
Q Consensus        10 ~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~--ed~~~WrCSvC   60 (135)
                      ...|.+|.|.|..-.-.+.|.-|...+|.+|+.+-..-..  ......-|..|
T Consensus         2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~~~~~~~rvC~~C   54 (57)
T cd00065           2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSMGGGKPVRVCDSC   54 (57)
T ss_pred             cCcCcccCccccCCccccccCcCcCCcChHHcCCeeecCcccCCCccEeChHH
Confidence            3579999999999888999999999999999998755332  22344556555

>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1

Probab=94.09  E-value=0.061  Score=34.12  Aligned_cols=60  Identities=23%  Similarity=0.500  Sum_probs=45.0

Q ss_pred             CCCCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCC--CCceeehhhhhhhh
Q psy15639          6 PAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQD--ENTWRCSICRRKLQ   65 (135)
Q Consensus         6 p~~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed--~~~WrCSvCRRK~~   65 (135)
                      +......|..|.+.|.--.-.+.|--|...||..|+.+--.-....  ....-|..|-.+|+
T Consensus         6 ~~~~~~~C~~C~~~F~~~~rk~hCr~CG~i~C~~C~~~~~~~~~~~~~~p~rvC~~C~~~~~   67 (68)
T smart00064        6 PDEEVSNCMGCGKEFNLTKRRHHCRNCGRIFCSKCSSKKAPLPKLGIERPVRVCDDCYENLS   67 (68)
T ss_pred             CCCCCCcCcccCccccCcccccccccCCCCcChHHcCCeeecCccCCCCCcEECHHHHHHhc
Confidence            3344689999999999888889999999999999998754433221  14567777766653

The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the

>KOG2177|consensus

Probab=93.54  E-value=0.034  Score=38.20  Aligned_cols=43  Identities=28%  Similarity=0.708  Sum_probs=36.3

Q ss_pred             CCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhh
Q psy15639         10 LGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRR   62 (135)
Q Consensus        10 ~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRR   62 (135)
                      .-.|.||+--|+.-    +...|.|.+|..|.-..-.      ...+|.+||.
T Consensus        13 ~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~------~~~~Cp~cr~   55 (386)
T KOG2177|consen   13 ELTCPICLEYFREP----VLLPCGHNFCRACLTRSWE------GPLSCPVCRP   55 (386)
T ss_pred             cccChhhHHHhhcC----ccccccchHhHHHHHHhcC------CCcCCcccCC
Confidence            45799999999876    7788999999999877665      5599999993

>smart00249 PHD PHD zinc finger

Probab=93.53  E-value=0.057  Score=30.13  Aligned_cols=47  Identities=26%  Similarity=0.567  Sum_probs=35.6

Q ss_pred             CchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhh
Q psy15639         12 NCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSIC   60 (135)
Q Consensus        12 ~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvC   60 (135)
                      .|.+|.+.. .++..-.|..|...+=.+|...... .......|.|+.|
T Consensus         1 ~C~~C~~~~-~~~~~i~C~~C~~~~H~~C~~~~~~-~~~~~~~~~C~~C   47 (47)
T smart00249        1 YCSVCGKPD-DGGELLQCDGCDRWYHQTCLGPPLL-EEEPDGKWYCPKC   47 (47)
T ss_pred             CcccCCCcC-CCCCEEECCCCCchhhhhhCCCccc-CCCCCCCEECcCC
Confidence            378898887 5666778889988887888776655 3456779999876

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=93.07  E-value=0.026  Score=33.95  Aligned_cols=43  Identities=28%  Similarity=0.859  Sum_probs=32.8

Q ss_pred             chhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhh
Q psy15639         13 CRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRR   62 (135)
Q Consensus        13 CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRR   62 (135)
                      |.||.+.|.+++...+ -.|.|..|+.|+.-..      ...-.|.+||+
T Consensus         2 C~~C~~~~~~~~~~~l-~~CgH~~C~~C~~~~~------~~~~~CP~C~k   44 (44)
T PF14634_consen    2 CNICFEKYSEERRPRL-TSCGHIFCEKCLKKLK------GKSVKCPICRK   44 (44)
T ss_pred             CcCcCccccCCCCeEE-cccCCHHHHHHHHhhc------CCCCCCcCCCC
Confidence            8899999955544333 6899999999998776      45567888874

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=91.64  E-value=0.019  Score=31.48  Aligned_cols=44  Identities=25%  Similarity=0.668  Sum_probs=29.7

Q ss_pred             CchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhh
Q psy15639         12 NCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRK   63 (135)
Q Consensus        12 ~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK   63 (135)
                      .|.||+..|  .+. .+-..|.|..|.+|.......     ...+|.+|+..
T Consensus         1 ~C~iC~~~~--~~~-~~~~~C~H~~c~~C~~~~~~~-----~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEF--REP-VVLLPCGHVFCRSCIDKWLKS-----GKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhh--hCc-eEecCCCChhcHHHHHHHHHh-----CcCCCCCCCCc
Confidence            488999888  222 233459999999998532211     46789999864

>KOG3799|consensus

Probab=91.60  E-value=0.082  Score=42.52  Aligned_cols=53  Identities=26%  Similarity=0.738  Sum_probs=45.4

Q ss_pred             CCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhh
Q psy15639         10 LGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKL   64 (135)
Q Consensus        10 ~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~   64 (135)
                      .-.|-||.|.=-+|-.-|+|.-|+-+.|--|..--.+-.+  --.|-|+.|+...
T Consensus        65 datC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsN--Kv~wvcnlc~k~q  117 (169)
T KOG3799|consen   65 DATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSN--KVMWVCNLCRKQQ  117 (169)
T ss_pred             CcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccC--ceEEeccCCcHHH
Confidence            4579999999889999999999999999999887666543  6789999998753

>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines

Probab=84.87  E-value=0.26  Score=27.97  Aligned_cols=29  Identities=31%  Similarity=0.730  Sum_probs=13.3

Q ss_pred             CchhhccccCCCCccchhhhhhhhhhcccc
Q psy15639         12 NCRVCLKSFKPDDYSRVCYECHQKVCEDCA   41 (135)
Q Consensus        12 ~CRVClKsfkP~e~~~tC~eCqqkVCEDCA   41 (135)
                      .|.+|.+.... ++...|.+|+--+.+.||
T Consensus         2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca   30 (30)
T PF07649_consen    2 RCDACGKPIDG-GWFYRCSECDFDLHEECA   30 (30)
T ss_dssp             --TTTS----S---EEE-TTT-----HHHH
T ss_pred             cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence            58999999888 889999999988888876

The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=82.24  E-value=0.31  Score=39.37  Aligned_cols=52  Identities=17%  Similarity=0.452  Sum_probs=35.7

Q ss_pred             CCCchhhccccCCCCccchhhhhhhhhhccccccc-C------CCC---CCCCCceeehhhhhhhh
Q psy15639         10 LGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYS-K------LDE---NQDENTWRCSICRRKLQ   65 (135)
Q Consensus        10 ~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYS-k------l~~---~ed~~~WrCSvCRRK~~   65 (135)
                      .-.|.||+..|+  +...  ..|.|..|..|.... .      ...   ....+..+|.+||.++.
T Consensus        18 ~~~CpICld~~~--dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is   79 (193)
T PLN03208         18 DFDCNICLDQVR--DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS   79 (193)
T ss_pred             ccCCccCCCcCC--CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence            357999999875  4444  379999999998521 1      000   11345689999999874

>smart00396 ZnF_UBR1 Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway

Probab=81.17  E-value=0.5  Score=31.72  Aligned_cols=31  Identities=26%  Similarity=0.594  Sum_probs=26.7

Q ss_pred             hhhccccCCCCccchhhhhhh----hhhccccccc
Q psy15639         14 RVCLKSFKPDDYSRVCYECHQ----KVCEDCASYS   44 (135)
Q Consensus        14 RVClKsfkP~e~~~tC~eCqq----kVCEDCASYS   44 (135)
                      .+|.+.|+.+|+...|..|+.    .+|.+|+--+
T Consensus         1 ~~C~~~~~~~~~~y~C~tC~~~~~~~iC~~Cf~~~   35 (71)
T smart00396        1 DVCTYKFTGGEVIYRCKTCGLDPTCVLCSDCFRSN   35 (71)
T ss_pred             CCCCCccCCCCEEEECcCCCCCCCEeEChHHCCCC
Confidence            379999999999999999985    6899998633

Domain is involved in recognition of N-end rule substrates in yeast Ubr1p

>PHA02929 N1R/p28-like protein; Provisional

Probab=80.97  E-value=0.4  Score=39.28  Aligned_cols=52  Identities=19%  Similarity=0.586  Sum_probs=36.9

Q ss_pred             CCCCchhhccccCCCCcc----chhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhc
Q psy15639          9 RLGNCRVCLKSFKPDDYS----RVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQS   66 (135)
Q Consensus         9 r~g~CRVClKsfkP~e~~----~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~s   66 (135)
                      ....|-||+-.|...++.    .+=..|+|..|.+|-.--...      .=+|.+||..+++
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~------~~tCPlCR~~~~~  228 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE------KNTCPVCRTPFIS  228 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc------CCCCCCCCCEeeE
Confidence            357899999988755532    234589999999998543211      2279999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	135
2zet_C	153	Melanophilin; complex, GTP-binding protein, GTPase	1e-05
1zbd_B	134	Rabphilin-3A; G protein, effector, RABCDR, synapti	3e-05
2csz_A	76	Synaptotagmin-like protein 4; exophilin 2, granuph	4e-04

>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} Length = 153

 Score = 41.5 bits (96), Expect = 1e-05
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 12  NCRVCLKSFKP-DDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRAQ 69
           +C  CL+ ++   +  R C EC   VC+ C+         +E  W C  C      +  
Sbjct: 70  HCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHP-----EEQGWLCDPCHLARVVKIG 123

>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 Length = 134

 Score = 40.3 bits (93), Expect = 3e-05
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 12  NCRVCLKSFKPD-DYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRAQ 69
            C +C +        S VC +C + VC  C    +   N+    W C IC  + +   +
Sbjct: 57  RCILCGEQLGMLGSASVVCEDCKKNVCTKCG--VETSNNRPHPVWLCKICLEQREVWKR 113

>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 76

 Score = 36.1 bits (83), Expect = 4e-04
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 10/66 (15%)

Query: 2  KSDKPAARLGNCRVCLKSFKP----DDYSRVCYECHQKVCEDCASYSKLDENQDENTWRC 57
          K  K  ++  + R C +  +        +  C  C+  VC DC             TWRC
Sbjct: 14 KGAKRGSQHYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQES------NGTWRC 67

Query: 58 SICRRK 63
           +C   
Sbjct: 68 KVCSGP 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	135
1zbd_B	134	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.17
2zet_C	153	Melanophilin; complex, GTP-binding protein, GTPase	97.78
2a20_A	62	Regulating synaptic membrane exocytosis protein 2;	97.14
2csz_A	76	Synaptotagmin-like protein 4; exophilin 2, granuph	96.91
2yw8_A	82	RUN and FYVE domain-containing protein 1; structur	96.61
2ect_A	78	Ring finger protein 126; metal binding protein, st	96.5
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	96.29
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	96.08
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	96.04
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	95.98
1joc_A	125	EEA1, early endosomal autoantigen 1; FYVE domain,	95.84
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	95.8
3t7l_A	90	Zinc finger FYVE domain-containing protein 16; str	95.76
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	95.66
2ea5_A	68	Cell growth regulator with ring finger domain prot	95.52
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	95.39
1wfk_A	88	Zinc finger, FYVE domain containing 19; riken stru	95.38
1z2q_A	84	LM5-1; membrane protein, FYVE domain, zinc-finger;	95.13
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	95.13
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	95.04
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	95.01
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	94.72
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	94.61
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	94.3
1we9_A	64	PHD finger family protein; structural genomics, PH	94.2
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	94.15
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	94.14
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	93.98
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	93.97
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	93.9
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	93.75
1x4u_A	84	Zinc finger, FYVE domain containing 27 isoform B;	93.68
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	93.62
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	93.55
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	93.38
1vfy_A	73	Phosphatidylinositol-3-phosphate binding FYVE doma	93.03
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	92.94
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	92.28
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	92.17
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	92.03
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	91.97
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	91.73
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	91.58
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	91.15
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	90.95
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	90.92
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	90.88
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	90.71
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	90.6
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	90.11
1y02_A	120	CARP2, FYVE-ring finger protein sakura; zinc-bindi	89.92
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	89.69
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	89.15
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	88.53
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	88.48
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	88.47
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	88.3
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	87.82
1wee_A	72	PHD finger family protein; structural genomics, PH	87.81
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	87.68
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	87.3
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	86.27
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	85.39
2yt5_A	66	Metal-response element-binding transcription facto	84.88
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	84.77
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	84.21
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	84.15
3o70_A	68	PHD finger protein 13; PHF13, structural genomics	84.06
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	83.84
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	83.83
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	83.7
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	82.85
3kqi_A	75	GRC5, PHD finger protein 2; metal-binding, zinc-fi	82.71
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	82.38
1wew_A	78	DNA-binding family protein; structural genomics, P	82.25
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	82.17
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	80.61
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	80.59

>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1

Probab=98.17  E-value=5.2e-07  Score=66.01  Aligned_cols=55  Identities=24%  Similarity=0.669  Sum_probs=45.3

Q ss_pred             CCCchhhccccC-CCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhc
Q psy15639         10 LGNCRVCLKSFK-PDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQS   66 (135)
Q Consensus        10 ~g~CRVClKsfk-P~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~s   66 (135)
                      ...|-+|.+.|. -+...++|.+|+++||.+|..|+...  .....|.|.+|+....-
T Consensus        55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~--~~~~~W~C~vC~k~rel  110 (134)
T 1zbd_B           55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNN--RPHPVWLCKICLEQREV  110 (134)
T ss_dssp             SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCS--SSSCCEEEHHHHHHHHH
T ss_pred             CccccccCCCcccccCCCCCCCCCCcccccccCCccCCC--CCccceechhhHHHHHH
Confidence            356999999994 66678999999999999999998643  34678999999987543

>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}

Probab=97.78  E-value=9.3e-06  Score=60.57  Aligned_cols=51  Identities=27%  Similarity=0.677  Sum_probs=42.7

Q ss_pred             CCCchhhccccCCC-CccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhh
Q psy15639         10 LGNCRVCLKSFKPD-DYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQ   65 (135)
Q Consensus        10 ~g~CRVClKsfkP~-e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~   65 (135)
                      ...|-+|.+.|+.- .-.++|.+|+++||-.|..|++.     ...|.|.+|+....
T Consensus        68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~-----~~~W~C~vC~k~re  119 (153)
T 2zet_C           68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPE-----EQGWLCDPCHLARV  119 (153)
T ss_dssp             GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSS-----SSSCEEHHHHHHHH
T ss_pred             CccchhhcCccccccCCCCcCCCCCchhhcccccccCC-----CCcEeeHHHHHHHH
Confidence            56799999988643 55789999999999999999873     46899999997654

>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C

Probab=97.14  E-value=0.00024  Score=48.40  Aligned_cols=53  Identities=26%  Similarity=0.743  Sum_probs=46.9

Q ss_pred             CCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhh
Q psy15639          9 RLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRK   63 (135)
Q Consensus         9 r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK   63 (135)
                      -...|.||+|.=-.|..-|+|.-|+-++|--|-.+-.+..  .-..|.|++||++
T Consensus         8 d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~--~k~~WvC~lC~k~   60 (62)
T 2a20_A            8 DAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRS--NKVMWVCNLCRKQ   60 (62)
T ss_dssp             CCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESST--TCEEEEEHHHHHH
T ss_pred             CcchhhhhccceeccCCCccccccCCeeecccCCEeeecC--CeEEEEehhhhhc
Confidence            3567999999988999999999999999999999988754  3678999999975

>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.91  E-value=0.00021  Score=49.45  Aligned_cols=47  Identities=30%  Similarity=0.800  Sum_probs=37.9

Q ss_pred             CCchhhccccCC-CCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhh
Q psy15639         11 GNCRVCLKSFKP-DDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRK   63 (135)
Q Consensus        11 g~CRVClKsfkP-~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK   63 (135)
                      -.|--|.++|-. ..-.-+|..|+++||-+|-.|++.      ..|.|.||-.-
T Consensus        26 r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~~~------~~W~C~VC~k~   73 (76)
T 2csz_A           26 RTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQESN------GTWRCKVCSGP   73 (76)
T ss_dssp             CBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEECST------TCEEEHHHHSS
T ss_pred             cchhhhCccccccccCCCcCcccChhhcccccccCCC------CCEEEeeCchh
Confidence            358888888853 345678999999999999999865      68999999653

>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A

Probab=96.61  E-value=0.0015  Score=43.14  Aligned_cols=64  Identities=22%  Similarity=0.458  Sum_probs=50.0

Q ss_pred             CCCCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhcccc
Q psy15639          6 PAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRAQ   69 (135)
Q Consensus         6 p~~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~q   69 (135)
                      |..-...|.+|.+.|..-.-.|-|-.|.+.||.+|.++...-.......--|..|-.+|..|.+
T Consensus        15 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~~~~   78 (82)
T 2yw8_A           15 KDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLLQRCS   78 (82)
T ss_dssp             CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTTC---
T ss_pred             cCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHHHhcc
Confidence            4455678999999999888889999999999999999864333345667889999998877753

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.50  E-value=0.0012  Score=40.75  Aligned_cols=55  Identities=18%  Similarity=0.413  Sum_probs=40.1

Q ss_pred             CCCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhccc
Q psy15639          7 AARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRA   68 (135)
Q Consensus         7 ~~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~   68 (135)
                      ......|.||+..|...+...+- .|.|..|.+|..-.-.      ...+|.+||.++..+.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~   66 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQL-PCNHLFHDSCIVPWLE------QHDSCPVCRKSLTGQN   66 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEEC-TTSCEEETTTTHHHHT------TTCSCTTTCCCCCCSC
T ss_pred             CCCCCCCeeCCccccCCCCEEEe-CCCCeecHHHHHHHHH------cCCcCcCcCCccCCcc
Confidence            44567899999999876644332 4999999999753221      1248999999988766

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=96.29  E-value=0.0024  Score=39.06  Aligned_cols=58  Identities=16%  Similarity=0.409  Sum_probs=39.7

Q ss_pred             CCCCCCchhhccccCCCCccchhhhhhhhhhcccccc-cCCCCCCCCCceeehhhhhhhhccc
Q psy15639          7 AARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASY-SKLDENQDENTWRCSICRRKLQSRA   68 (135)
Q Consensus         7 ~~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASY-Skl~~~ed~~~WrCSvCRRK~~sr~   68 (135)
                      ......|.||+..|+-  ...  ..|.|..|.+|..- .+.........-+|.+||..+....
T Consensus         9 ~~~~~~C~IC~~~~~~--p~~--l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~   67 (79)
T 2egp_A            9 VQEEVTCPICLELLTE--PLS--LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH   67 (79)
T ss_dssp             CCCCCEETTTTEECSS--CCC--CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred             cccCCCCcCCCcccCC--eeE--CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence            3445679999999864  322  27999999999863 2222222345679999999887643

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=96.08  E-value=0.0005  Score=39.70  Aligned_cols=51  Identities=16%  Similarity=0.455  Sum_probs=37.9

Q ss_pred             CCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhh
Q psy15639          9 RLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQ   65 (135)
Q Consensus         9 r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~   65 (135)
                      ....|.||+..|+.++-..+-..|.|..|.+|..---..      ..+|.+||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE------GYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH------TCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc------CCcCCCCCCcCC
Confidence            356899999999876655666779999999998532111      168999998764

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.04  E-value=0.0016  Score=39.72  Aligned_cols=57  Identities=18%  Similarity=0.489  Sum_probs=39.0

Q ss_pred             CCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhccc
Q psy15639          8 ARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRA   68 (135)
Q Consensus         8 ~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~   68 (135)
                      .....|.||+..|+---   + ..|.|..|.+|..-.-.....+.....|.+||..+....
T Consensus        17 ~~~~~C~IC~~~~~~p~---~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecw_A           17 KEEVTCPICLELLKEPV---S-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN   73 (85)
T ss_dssp             CTTTSCTTTCSCCSSCE---E-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred             ccCCCCcCCChhhCcce---e-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence            34568999999986432   2 359999999997532211112345789999999887543

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.98  E-value=0.0012  Score=40.37  Aligned_cols=57  Identities=19%  Similarity=0.520  Sum_probs=38.2

Q ss_pred             CCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhccc
Q psy15639          8 ARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRA   68 (135)
Q Consensus         8 ~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~   68 (135)
                      .....|.||+..|+-  ...+  .|.|..|.+|..-.-.....+....+|.+||..+....
T Consensus        17 ~~~~~C~IC~~~~~~--p~~~--~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecv_A           17 KEEVTCPICLELLTQ--PLSL--DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN   73 (85)
T ss_dssp             CCCCCCTTTCSCCSS--CBCC--SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred             cCCCCCCCCCcccCC--ceeC--CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence            345689999999864  3333  79999999997432111001123678999999987654

>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A

Probab=95.84  E-value=0.0059  Score=43.38  Aligned_cols=61  Identities=23%  Similarity=0.538  Sum_probs=48.5

Q ss_pred             CCCCCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhh
Q psy15639          5 KPAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQ   65 (135)
Q Consensus         5 kp~~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~   65 (135)
                      .|..-...|.+|.+.|..---.|-|--|.+-||..|.++...-.......-.|..|-.+|+
T Consensus        64 ~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p~~~~p~RVC~~C~~~l~  124 (125)
T 1joc_A           64 AEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFNDLQ  124 (125)
T ss_dssp             CCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTTCSSCEEECHHHHHHTT
T ss_pred             ccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCccccCCCCCCCEeCHHHHHHhc
Confidence            3455667899999999987778999999999999999987544444556677888877664

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=95.80  E-value=0.0016  Score=37.71  Aligned_cols=49  Identities=20%  Similarity=0.492  Sum_probs=37.9

Q ss_pred             CCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhh
Q psy15639         10 LGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKL   64 (135)
Q Consensus        10 ~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~   64 (135)
                      ...|.||+..|..++...+-..|.|..|.+|..-.-      ....+|.+||+.+
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~------~~~~~CP~Cr~~~   53 (55)
T 1iym_A            5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL------GSHSTCPLCRLTV   53 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT------TTCCSCSSSCCCS
T ss_pred             CCcCccCCccccCCCceEECCCCCCcccHHHHHHHH------HcCCcCcCCCCEe
Confidence            467999999999988777766799999999974321      1235799999764

>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}

Probab=95.76  E-value=0.0044  Score=41.76  Aligned_cols=62  Identities=18%  Similarity=0.446  Sum_probs=48.5

Q ss_pred             CCCCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhcc
Q psy15639          6 PAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSR   67 (135)
Q Consensus         6 p~~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr   67 (135)
                      |..-...|.+|.+.|..-.-.|.|-.|.+.||.+|.++...-...+...-.|..|-.+|...
T Consensus        16 ~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~~   77 (90)
T 3t7l_A           16 PDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISKA   77 (90)
T ss_dssp             CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHHHH
T ss_pred             ccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHHHH
Confidence            44456679999999998777899999999999999998754333335567788998877644

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.66  E-value=0.0062  Score=36.81  Aligned_cols=51  Identities=18%  Similarity=0.542  Sum_probs=38.4

Q ss_pred             CCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhcccc
Q psy15639          8 ARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRAQ   69 (135)
Q Consensus         8 ~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~q   69 (135)
                      .....|.||+..|+.     +-..|.|..|.+|..---.      ...+|.+||..+.+...
T Consensus        13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~~   63 (70)
T 2ecn_A           13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD------RHRNCPICRLQMTGANE   63 (70)
T ss_dssp             CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC------CCSSCHHHHHCTTCCCC
T ss_pred             CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH------CcCcCCCcCCcccCCCc
Confidence            445789999999876     3356899999999853211      36789999999886653

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.52  E-value=0.0037  Score=39.55  Aligned_cols=50  Identities=22%  Similarity=0.567  Sum_probs=38.0

Q ss_pred             CCCCCCchhhccccCCCCccchhhhhhhh-hhcccccccCCCCCCCCCceeehhhhhhhhccccc
Q psy15639          7 AARLGNCRVCLKSFKPDDYSRVCYECHQK-VCEDCASYSKLDENQDENTWRCSICRRKLQSRAQP   70 (135)
Q Consensus         7 ~~r~g~CRVClKsfkP~e~~~tC~eCqqk-VCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~qp   70 (135)
                      ......|.||+..++    .-+-.-|.|. .|.+|+.          ..+.|.+||..+..+++=
T Consensus        12 ~~~~~~C~IC~~~~~----~~v~~pCgH~~~C~~C~~----------~~~~CP~CR~~i~~~~~i   62 (68)
T 2ea5_A           12 EENSKDCVVCQNGTV----NWVLLPCRHTCLCDGCVK----------YFQQCPMCRQFVQESFAL   62 (68)
T ss_dssp             CCCSSCCSSSSSSCC----CCEETTTTBCCSCTTHHH----------HCSSCTTTCCCCCCEECC
T ss_pred             CCCCCCCCCcCcCCC----CEEEECCCChhhhHHHHh----------cCCCCCCCCcchhceEEe
Confidence            344678999998654    2334579999 9999997          248999999999887643

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=95.39  E-value=0.0025  Score=41.29  Aligned_cols=51  Identities=20%  Similarity=0.445  Sum_probs=38.0

Q ss_pred             CCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhc
Q psy15639          9 RLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQS   66 (135)
Q Consensus         9 r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~s   66 (135)
                      ....|.||+..|..++...+-. |.|..|.+|..---..      .-.|.+||+.+..
T Consensus        39 ~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~------~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           39 QEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQK------SGTCPVCRCMFPP   89 (91)
T ss_dssp             SCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTT------TCBCTTTCCBSSC
T ss_pred             CCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHc------CCcCcCcCccCCC
Confidence            3456999999999988766554 9999999997532211      2389999988754

>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1

Probab=95.38  E-value=0.0073  Score=40.84  Aligned_cols=61  Identities=20%  Similarity=0.442  Sum_probs=48.2

Q ss_pred             CCCchhhccccCCCCccchhhhhhhhhhcccccccC-CCCCCCCCceeehhhhhhhhccccc
Q psy15639         10 LGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSK-LDENQDENTWRCSICRRKLQSRAQP   70 (135)
Q Consensus        10 ~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSk-l~~~ed~~~WrCSvCRRK~~sr~qp   70 (135)
                      ...|.+|.+.|..-.-.|-|-.|.+.+|.+|.++.. ++.......-.|..|-.+|..+..+
T Consensus         9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~~~~   70 (88)
T 1wfk_A            9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGSSD   70 (88)
T ss_dssp             CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHCCCC
T ss_pred             CCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhcccc
Confidence            457999999999888889999999999999999843 3322234567799999988877644

>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}

Probab=95.13  E-value=0.011  Score=39.09  Aligned_cols=64  Identities=20%  Similarity=0.387  Sum_probs=49.4

Q ss_pred             CCCCCCCCchhhccccCCCCccchhhhhhhhhhcccccccCC-CCCC-CCCceeehhhhhhhhccc
Q psy15639          5 KPAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKL-DENQ-DENTWRCSICRRKLQSRA   68 (135)
Q Consensus         5 kp~~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl-~~~e-d~~~WrCSvCRRK~~sr~   68 (135)
                      .|......|.+|.+.|..-.-.|-|-.|.+.||.+|.++... +... ....--|..|-.++.+..
T Consensus        16 ~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~~~   81 (84)
T 1z2q_A           16 QEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRSSN   81 (84)
T ss_dssp             CCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHTSC
T ss_pred             ccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhhcc
Confidence            345567789999999998888899999999999999998532 2211 344667999988877654

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=95.13  E-value=0.0035  Score=37.80  Aligned_cols=54  Identities=19%  Similarity=0.493  Sum_probs=37.8

Q ss_pred             CCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhccc
Q psy15639          8 ARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRA   68 (135)
Q Consensus         8 ~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~   68 (135)
                      .....|.||+..|..++...+ ..|.|..|.+|..---..      ..+|.+||..+....
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~-~~C~H~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRR-LPCMHLFHQVCVDQWLIT------NKKCPICRVDIEAQL   65 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEE-CTTSCEEEHHHHHHHHHH------CSBCTTTCSBSCSCC
T ss_pred             CCCCCCeeCCccccCCCcEEE-eCCCCHHHHHHHHHHHHc------CCCCcCcCccccCcC
Confidence            445689999999987654433 359999999997421111      236999999876644

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=95.04  E-value=0.005  Score=40.73  Aligned_cols=72  Identities=19%  Similarity=0.525  Sum_probs=44.7

Q ss_pred             CCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhccccccccccccccccchHHHHHH
Q psy15639         10 LGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRAQPVLSQNSTDSLLDVPVLEAL   89 (135)
Q Consensus        10 ~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~qp~~~q~stds~l~vpvleal   89 (135)
                      ...|.||+.-|.  +...+  .|.|..|.+|..-.-.     .....|.+||..+.....+.   ...+..++.-+.+.+
T Consensus        15 ~~~C~iC~~~~~--~p~~~--~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~~~~~~---~~~~~~~n~~l~~~i   82 (115)
T 3l11_A           15 ECQCGICMEILV--EPVTL--PCNHTLCKPCFQSTVE-----KASLCCPFCRRRVSSWTRYH---TRRNSLVNVELWTII   82 (115)
T ss_dssp             HHBCTTTCSBCS--SCEEC--TTSCEECHHHHCCCCC-----TTTSBCTTTCCBCHHHHHHH---HHTTCCBCHHHHHHH
T ss_pred             CCCCccCCcccC--ceeEc--CCCCHHhHHHHHHHHh-----HCcCCCCCCCcccCcccccc---ccccchhhHHHHHHH
Confidence            356999999886  34344  7999999999753321     23478999999887632111   112234445555555


Q ss_pred             Hhhc
Q psy15639         90 QRRH   93 (135)
Q Consensus        90 qrrh   93 (135)
                      ++-.
T Consensus        83 ~~~~   86 (115)
T 3l11_A           83 QKHY   86 (115)
T ss_dssp             HHHS
T ss_pred             HHHC
Confidence            4443

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.01  E-value=0.0035  Score=38.28  Aligned_cols=55  Identities=27%  Similarity=0.507  Sum_probs=39.5

Q ss_pred             CCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhcccc
Q psy15639          8 ARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRAQ   69 (135)
Q Consensus         8 ~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~q   69 (135)
                      .-...|.||+..|...+...+. .|.|..|.+|..---..      ..+|.+||+.+..-.+
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~------~~~CP~Cr~~~~~~~~   67 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLEV------RKVCPLCNMPVLQLAQ   67 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHHH------CSBCTTTCCBCSSCCS
T ss_pred             CCCCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHHc------CCcCCCcCcccccccc
Confidence            3456899999999887766554 49999999997532111      1279999998866543

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.72  E-value=0.0082  Score=36.25  Aligned_cols=53  Identities=15%  Similarity=0.538  Sum_probs=37.8

Q ss_pred             CCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhcc
Q psy15639          8 ARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSR   67 (135)
Q Consensus         8 ~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr   67 (135)
                      .....|.||+..|+  +...+  .|.|..|.+|..-.-..   ....-+|.+||..+...
T Consensus        18 ~~~~~C~IC~~~~~--~~~~~--~CgH~fC~~Ci~~~~~~---~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           18 QEEVICPICLDILQ--KPVTI--DCGHNFCLKCITQIGET---SCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCCBCTTTCSBCS--SEEEC--TTCCEEEHHHHHHHCSS---SCSCCCCSSSCCCCCCC
T ss_pred             ccCCEeccCCcccC--CeEEc--CCCChhhHHHHHHHHHc---CCCCCCCCCCCCcCCcc
Confidence            44568999999887  33333  89999999998643321   13456899999887643

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=94.61  E-value=0.0063  Score=39.34  Aligned_cols=49  Identities=24%  Similarity=0.564  Sum_probs=36.3

Q ss_pred             CCchhhccccCCCCccchhhhhhhh-hhcccccccCCCCCCCCCceeehhhhhhhhcccccccc
Q psy15639         11 GNCRVCLKSFKPDDYSRVCYECHQK-VCEDCASYSKLDENQDENTWRCSICRRKLQSRAQPVLS   73 (135)
Q Consensus        11 g~CRVClKsfkP~e~~~tC~eCqqk-VCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~qp~~~   73 (135)
                      ..|.||+..++-    -+=.-|.|. .|.+|+.-          .|.|.+||..+..+.+-+++
T Consensus        19 ~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~----------~~~CP~Cr~~i~~~~~i~~p   68 (79)
T 2yho_A           19 MLCMVCCEEEIN----STFCPCGHTVCCESCAAQ----------LQSCPVCRSRVEHVQHVYLP   68 (79)
T ss_dssp             TBCTTTSSSBCC----EEEETTCBCCBCHHHHTT----------CSBCTTTCCBCCEEEECBCT
T ss_pred             CEeEEeCcccCc----EEEECCCCHHHHHHHHHh----------cCcCCCCCchhhCeEEEEeC
Confidence            479999876542    222479999 89999862          36999999999998754443

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=94.30  E-value=0.0034  Score=41.28  Aligned_cols=71  Identities=21%  Similarity=0.523  Sum_probs=47.1

Q ss_pred             CCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhccccccccccccccccchHHHHHHH
Q psy15639         11 GNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRAQPVLSQNSTDSLLDVPVLEALQ   90 (135)
Q Consensus        11 g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~qp~~~q~stds~l~vpvlealq   90 (135)
                      ..|.||+..|+-   -.+|..|.|..|.+|..-.-...     ...|.+||..+..           +.+....+++.+.
T Consensus        23 ~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~-----~~~CP~Cr~~~~~-----------~~l~~~~~~~~i~   83 (100)
T 3lrq_A           23 FRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQ-----RAQCPHCRAPLQL-----------RELVNCRWAEEVT   83 (100)
T ss_dssp             TBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHT-----CSBCTTTCCBCCG-----------GGCEECTTHHHHH
T ss_pred             CCCccCCccccC---ccccCCCCChhhHHHHHHHHHHC-----cCCCCCCCCcCCH-----------HHhHhhHHHHHHH
Confidence            469999999973   45668999999999975221111     1689999988743           3455556666666


Q ss_pred             hhcccccccc
Q psy15639         91 RRHSDVKIGS  100 (135)
Q Consensus        91 rrhsd~klg~  100 (135)
                      ......++++
T Consensus        84 ~~~~~l~~~~   93 (100)
T 3lrq_A           84 QQLDTLQLCS   93 (100)
T ss_dssp             HHHHHHCC--
T ss_pred             HHHHHHHHHH
Confidence            6666666555

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=94.20  E-value=0.017  Score=35.88  Aligned_cols=55  Identities=20%  Similarity=0.541  Sum_probs=42.8

Q ss_pred             CCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhh
Q psy15639         10 LGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQ   65 (135)
Q Consensus        10 ~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~   65 (135)
                      ...|.+|.+.+.++++---|..|..-.=..|...+.... +....|.|..|+.|.+
T Consensus         6 ~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~-~~~~~~~C~~C~~k~~   60 (64)
T 1we9_A            6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARA-EHIKQYKCPSCSNKSG   60 (64)
T ss_dssp             CCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGG-GGCSSCCCHHHHTTTC
T ss_pred             CCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHh-cCCCcEECCCCcCcCC
Confidence            346899999998888888899998776677888765432 3357899999998754

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.15  E-value=0.0087  Score=37.04  Aligned_cols=57  Identities=19%  Similarity=0.538  Sum_probs=39.6

Q ss_pred             CCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhcc
Q psy15639          8 ARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSR   67 (135)
Q Consensus         8 ~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr   67 (135)
                      .....|.||+..|..++..-+-..|.|..|.+|..-.-...   ....+|.+||+.+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS---INGVRCPFCSKITRIT   69 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC---SSCBCCTTTCCCBCCS
T ss_pred             cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC---CCCcCCCCCCCcccch
Confidence            34567999999998776423333799999999975322111   2467999999876543

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.14  E-value=0.0045  Score=38.17  Aligned_cols=52  Identities=23%  Similarity=0.514  Sum_probs=36.6

Q ss_pred             CCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhc
Q psy15639          8 ARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQS   66 (135)
Q Consensus         8 ~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~s   66 (135)
                      .....|.||+..|..++...+ ..|.|..|.+|..---.      ....|.+||+.+..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~-l~C~H~fh~~Ci~~w~~------~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRV-LPCNHEFHAKCVDKWLK------ANRTCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEE-ETTTEEEETTHHHHHHH------HCSSCTTTCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEE-ECCCCHhHHHHHHHHHH------cCCcCcCcCCcCCC
Confidence            345679999999988764443 34999999999753211      12479999977643

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.98  E-value=0.013  Score=35.89  Aligned_cols=53  Identities=21%  Similarity=0.564  Sum_probs=36.9

Q ss_pred             CCCCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhccc
Q psy15639          6 PAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRA   68 (135)
Q Consensus         6 p~~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~   68 (135)
                      +......|.||+..|+-  ...+  .|.|..|.+|..-.-..      ..+|.+||..+....
T Consensus        11 ~~~~~~~C~IC~~~~~~--~~~~--~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~~   63 (71)
T 2d8t_A           11 PSLTVPECAICLQTCVH--PVSL--PCKHVFCYLCVKGASWL------GKRCALCRQEIPEDF   63 (71)
T ss_dssp             SSSSCCBCSSSSSBCSS--EEEE--TTTEEEEHHHHHHCTTC------SSBCSSSCCBCCHHH
T ss_pred             cCCCCCCCccCCcccCC--CEEc--cCCCHHHHHHHHHHHHC------CCcCcCcCchhCHhh
Confidence            34456789999998853  2222  69999999998532211      268999999887543

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.97  E-value=0.007  Score=37.93  Aligned_cols=45  Identities=18%  Similarity=0.564  Sum_probs=34.1

Q ss_pred             CCchhhccccCCCCccchhhhhhhh-hhcccccccCCCCCCCCCceeehhhhhhhhcccc
Q psy15639         11 GNCRVCLKSFKPDDYSRVCYECHQK-VCEDCASYSKLDENQDENTWRCSICRRKLQSRAQ   69 (135)
Q Consensus        11 g~CRVClKsfkP~e~~~tC~eCqqk-VCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~q   69 (135)
                      ..|.||+..|+--  .  =..|.|. .|.+|+.          ....|.+||.++..++.
T Consensus        26 ~~C~IC~~~~~~~--~--~~pCgH~~~C~~C~~----------~~~~CP~Cr~~i~~~~~   71 (75)
T 2ecg_A           26 KLCKICMDRNIAI--V--FVPCGHLVTCKQCAE----------AVDKCPMCYTVITFKQK   71 (75)
T ss_dssp             HSCSSSCSSCCCB--C--CSSSCCCCBCHHHHH----------HCSBCTTTCCBCCCCCB
T ss_pred             CCCCcCCCCCCCE--E--EecCCCHHHHHHHhh----------CCCCCccCCceecCcEE
Confidence            4699999887532  2  2479999 9999983          23789999999887654

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=93.90  E-value=0.0083  Score=37.73  Aligned_cols=46  Identities=20%  Similarity=0.566  Sum_probs=35.1

Q ss_pred             CCchhhccccCCCCccchhhhhhhh-hhcccccccCCCCCCCCCceeehhhhhhhhccccc
Q psy15639         11 GNCRVCLKSFKPDDYSRVCYECHQK-VCEDCASYSKLDENQDENTWRCSICRRKLQSRAQP   70 (135)
Q Consensus        11 g~CRVClKsfkP~e~~~tC~eCqqk-VCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~qp   70 (135)
                      ..|.||+..|+-  .  +-..|.|. .|.+|+.-.          ++|.+||..+..+++-
T Consensus        25 ~~C~iC~~~~~~--~--~~~pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~~~~i   71 (74)
T 4ic3_A           25 KLCKICMDRNIA--I--VFVPCGHLVTCKQCAEAV----------DKCPMCYTVITFKQKI   71 (74)
T ss_dssp             TBCTTTSSSBCC--E--EEETTCCBCCCHHHHTTC----------SBCTTTCCBCSEEEEC
T ss_pred             CCCCCCCCCCCC--E--EEcCCCChhHHHHhhhcC----------ccCCCcCcCccCcEEE
Confidence            579999987653  2  22479999 999997633          8999999999887643

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=93.75  E-value=0.017  Score=37.33  Aligned_cols=51  Identities=20%  Similarity=0.540  Sum_probs=35.7

Q ss_pred             CCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhccc
Q psy15639         11 GNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRA   68 (135)
Q Consensus        11 g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~   68 (135)
                      -.|.||+..|+-  ...  ..|.|..|..|..-.-...   ....+|.+||..+..+.
T Consensus        22 ~~C~IC~~~~~~--p~~--~~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~~~~   72 (112)
T 1jm7_A           22 LECPICLELIKE--PVS--TKCDHIFCKFCMLKLLNQK---KGPSQCPLCKNDITKRS   72 (112)
T ss_dssp             TSCSSSCCCCSS--CCB--CTTSCCCCSHHHHHHHHSS---SSSCCCTTTSCCCCTTT
T ss_pred             CCCcccChhhcC--eEE--CCCCCHHHHHHHHHHHHhC---CCCCCCcCCCCcCCHhh
Confidence            479999998863  322  3799999999975332211   23578999998877654

>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.68  E-value=0.054  Score=35.66  Aligned_cols=64  Identities=27%  Similarity=0.662  Sum_probs=48.2

Q ss_pred             CCCCCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCC--------CCCCceeehhhhhhhhccc
Q psy15639          5 KPAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDEN--------QDENTWRCSICRRKLQSRA   68 (135)
Q Consensus         5 kp~~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~--------ed~~~WrCSvCRRK~~sr~   68 (135)
                      .|..-...|.+|.+.|..-.-.|-|-.|.+-+|..|.++...-..        .....-.|..|-.+|..+.
T Consensus         9 ~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~~~~   80 (84)
T 1x4u_A            9 YPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLSKSG   80 (84)
T ss_dssp             CSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHHSCC
T ss_pred             ccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHhccC
Confidence            355667789999999988777899999999999999987533211        1234567999988876543

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=93.62  E-value=0.0036  Score=38.70  Aligned_cols=55  Identities=22%  Similarity=0.392  Sum_probs=37.5

Q ss_pred             CCCCCCCchhhccccCCCCccchhhhhhhh-hhcccccccCCCCCCCCCceeehhhhhhhhccc
Q psy15639          6 PAARLGNCRVCLKSFKPDDYSRVCYECHQK-VCEDCASYSKLDENQDENTWRCSICRRKLQSRA   68 (135)
Q Consensus         6 p~~r~g~CRVClKsfkP~e~~~tC~eCqqk-VCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~   68 (135)
                      +....+.|.||+..++---+  +=.-|.|. .|.+|+.--+.      ..++|.+||+++...+
T Consensus         3 ~~~~~~~C~IC~~~~~~~~~--~~~pCgH~~~C~~C~~~~~~------~~~~CPiCR~~i~~~i   58 (63)
T 2vje_B            3 CQNLLKPCSLCEKRPRDGNI--IHGRTGHLVTCFHCARRLKK------AGASCPICKKEIQLVI   58 (63)
T ss_dssp             CGGGGSBCTTTSSSBSCEEE--EETTEEEEEECHHHHHHHHH------TTCBCTTTCCBCCEEE
T ss_pred             CCCcCCCCcccCCcCCCeEE--EecCCCCHhHHHHHHHHHHH------hCCcCCCcCchhhceE
Confidence            34456789999986542221  11278998 79999874331      2379999999987655

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=93.55  E-value=0.004  Score=38.64  Aligned_cols=56  Identities=21%  Similarity=0.370  Sum_probs=38.0

Q ss_pred             CCCCCCCchhhccccCCCCccchhhhhhhh-hhcccccccCCCCCCCCCceeehhhhhhhhcccc
Q psy15639          6 PAARLGNCRVCLKSFKPDDYSRVCYECHQK-VCEDCASYSKLDENQDENTWRCSICRRKLQSRAQ   69 (135)
Q Consensus         6 p~~r~g~CRVClKsfkP~e~~~tC~eCqqk-VCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~q   69 (135)
                      |......|.||+..++---+-  --.|.|. .|.+|+.--..      ..++|.+||+++...++
T Consensus         4 ~~~~~~~C~IC~~~~~~~~~~--~~pCgH~~~C~~C~~~~~~------~~~~CPiCR~~i~~~i~   60 (64)
T 2vje_A            4 PLNAIEPCVICQGRPKNGCIV--HGKTGHLMACFTCAKKLKK------RNKPCPVCRQPIQMIVL   60 (64)
T ss_dssp             -CGGGSCCTTTSSSCSCEEEE--ETTEEEEEECHHHHHHHHH------TTCCCTTTCCCCCEEEE
T ss_pred             CCCCcCCCCcCCCCCCCEEEE--CCCCCChhhHHHHHHHHHH------cCCcCCCcCcchhceEe
Confidence            445667899999876532111  1269999 69999874432      34789999999876553

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=93.38  E-value=0.024  Score=36.95  Aligned_cols=54  Identities=22%  Similarity=0.587  Sum_probs=39.1

Q ss_pred             CCCCchhhccccCCCCcc-chhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhccc
Q psy15639          9 RLGNCRVCLKSFKPDDYS-RVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRA   68 (135)
Q Consensus         9 r~g~CRVClKsfkP~e~~-~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~   68 (135)
                      ....|.||+--|.-.+.. ..| .|.|..|-.|..-....     ...+|.+||+.+..+.
T Consensus        10 ~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~~-----~~~~CP~CR~~~~~~~   64 (78)
T 1e4u_A           10 DPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRTD-----ENGLCPACRKPYPEDP   64 (78)
T ss_dssp             CCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTTS-----SCSBCTTTCCBCSSCS
T ss_pred             cCCcCCccCccCcccccccccc-CCCCCcCHHHHHHHHhc-----CCCCCCCCCCccCCCc
Confidence            446899999988654433 334 79999999997544321     4579999999988765

>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1

Probab=93.03  E-value=0.023  Score=36.67  Aligned_cols=55  Identities=22%  Similarity=0.440  Sum_probs=42.6

Q ss_pred             CCchhhccccCCCCccchhhhhhhhhhcccccccCC-CCCC-CCCceeehhhhhhhh
Q psy15639         11 GNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKL-DENQ-DENTWRCSICRRKLQ   65 (135)
Q Consensus        11 g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl-~~~e-d~~~WrCSvCRRK~~   65 (135)
                      ..|.+|.+.|..-.-.|-|--|.+.||.+|.++... +... ....--|..|-.++.
T Consensus        12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~   68 (73)
T 1vfy_A           12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYE   68 (73)
T ss_dssp             SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEEEEGGGTEEEEEEECHHHHHHHH
T ss_pred             CcccCCCCccCCccccccCCCCCEEEcccccCCeEEcccCCCCCCCEECHHHHHHHH
Confidence            589999999998888899999999999999987532 2211 234577888877664

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=92.94  E-value=0.027  Score=39.03  Aligned_cols=57  Identities=16%  Similarity=0.553  Sum_probs=43.6

Q ss_pred             CCCchhhccccCCCCccchhh-hhhhhhhcccccccCCCC----CCCCCceeehhhhhhhhc
Q psy15639         10 LGNCRVCLKSFKPDDYSRVCY-ECHQKVCEDCASYSKLDE----NQDENTWRCSICRRKLQS   66 (135)
Q Consensus        10 ~g~CRVClKsfkP~e~~~tC~-eCqqkVCEDCASYSkl~~----~ed~~~WrCSvCRRK~~s   66 (135)
                      .-.|.+|+|.+.+++..-.|+ .|+.-.=-+|...+...-    .+....|.|..|+++...
T Consensus         3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~   64 (105)
T 2xb1_A            3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG   64 (105)
T ss_dssp             CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred             cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence            457999999999988888998 898777778888775221    022378999999987653

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.28  E-value=0.024  Score=34.07  Aligned_cols=52  Identities=17%  Similarity=0.457  Sum_probs=37.1

Q ss_pred             CCCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhcc
Q psy15639          7 AARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSR   67 (135)
Q Consensus         7 ~~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr   67 (135)
                      ....-.|.||+..|+-  ...  ..|.|..|..|..-.-.     .....|.+||..+..+
T Consensus        12 ~~~~~~C~IC~~~~~~--p~~--~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           12 VEDKYKCEKCHLVLCS--PKQ--TECGHRFCESCMAALLS-----SSSPKCTACQESIVKD   63 (66)
T ss_dssp             CCCCEECTTTCCEESS--CCC--CSSSCCCCHHHHHHHHT-----TSSCCCTTTCCCCCTT
T ss_pred             CCcCCCCCCCChHhcC--eeE--CCCCCHHHHHHHHHHHH-----hCcCCCCCCCcCCChh
Confidence            3445679999999863  222  38999999999754321     2356799999987654

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=92.17  E-value=0.017  Score=34.47  Aligned_cols=53  Identities=17%  Similarity=0.432  Sum_probs=36.9

Q ss_pred             CCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhccccc
Q psy15639          9 RLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRAQP   70 (135)
Q Consensus         9 r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~qp   70 (135)
                      ....|.||+..|+..-   +-..|.|..|.+|..-.-.      ....|.+||..+.+....
T Consensus         4 ~~~~C~IC~~~~~~~~---~~~~C~H~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~~~   56 (68)
T 1chc_A            4 VAERCPICLEDPSNYS---MALPCLHAFCYVCITRWIR------QNPTCPLCKVPVESVVHT   56 (68)
T ss_dssp             CCCCCSSCCSCCCSCE---EETTTTEEESTTHHHHHHH------HSCSTTTTCCCCCCEECC
T ss_pred             CCCCCeeCCccccCCc---EecCCCCeeHHHHHHHHHh------CcCcCcCCChhhHhhhhc
Confidence            3568999999986322   3446999999999843211      124899999998765543

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=92.03  E-value=0.028  Score=43.90  Aligned_cols=59  Identities=20%  Similarity=0.380  Sum_probs=0.0

Q ss_pred             CCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCC-CCCCceeehhhhhhhhc
Q psy15639          8 ARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDEN-QDENTWRCSICRRKLQS   66 (135)
Q Consensus         8 ~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~-ed~~~WrCSvCRRK~~s   66 (135)
                      .-...|.+|.+.|..---.|.|-.|.+-||..|.++.-.-.. .....=-|..|-.++..
T Consensus       373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~~  432 (434)
T 3mpx_A          373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELKK  432 (434)
T ss_dssp             ------------------------------------------------------------
T ss_pred             ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHHh
Confidence            345689999999987666799999999999999987543221 12233457777766643

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=91.97  E-value=0.039  Score=32.94  Aligned_cols=45  Identities=20%  Similarity=0.496  Sum_probs=33.6

Q ss_pred             CCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhcc
Q psy15639         10 LGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSR   67 (135)
Q Consensus        10 ~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr   67 (135)
                      .-.|.||+..|+-  .  +--.|.|..|..|..-         ....|.+||..+...
T Consensus         6 ~~~C~IC~~~~~~--p--~~l~CgH~fC~~Ci~~---------~~~~CP~Cr~~~~~~   50 (56)
T 1bor_A            6 FLRCQQCQAEAKC--P--KLLPCLHTLCSGCLEA---------SGMQCPICQAPWPLG   50 (56)
T ss_dssp             CSSCSSSCSSCBC--C--SCSTTSCCSBTTTCSS---------SSSSCSSCCSSSSCC
T ss_pred             CCCceEeCCccCC--e--EEcCCCCcccHHHHcc---------CCCCCCcCCcEeecC
Confidence            4579999998873  2  2246999999999754         345799999877543

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*

Probab=91.73  E-value=0.028  Score=40.05  Aligned_cols=55  Identities=13%  Similarity=0.359  Sum_probs=41.4

Q ss_pred             CCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhc
Q psy15639         10 LGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQS   66 (135)
Q Consensus        10 ~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~s   66 (135)
                      ...| +|++....+++---|..|..-.=..|...+... .+....|.|..|+++-..
T Consensus         8 ~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~-~~~~~~~~C~~C~~~~~~   62 (174)
T 2ri7_A            8 KLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSE-AELIDEYVCPQCQSTEDA   62 (174)
T ss_dssp             CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHH-HTTCSSCCCHHHHHHHHH
T ss_pred             CcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhh-ccCccCeecCCCcchhcc
Confidence            3469 999988878888889999877777888765432 234678999999987543

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=91.58  E-value=0.011  Score=40.81  Aligned_cols=48  Identities=23%  Similarity=0.640  Sum_probs=34.3

Q ss_pred             CchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhcccc
Q psy15639         12 NCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRAQ   69 (135)
Q Consensus        12 ~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~q   69 (135)
                      .|.||+.-|.  ++..  ..|.|..|.+|..-.-.      ..-.|.+||..+.++..
T Consensus        55 ~C~iC~~~~~--~~~~--~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~~  102 (138)
T 4ayc_A           55 QCIICSEYFI--EAVT--LNCAHSFCSYCINEWMK------RKIECPICRKDIKSKTY  102 (138)
T ss_dssp             BCTTTCSBCS--SEEE--ETTSCEEEHHHHHHHTT------TCSBCTTTCCBCCCEEE
T ss_pred             CCcccCcccC--CceE--CCCCCCccHHHHHHHHH------cCCcCCCCCCcCCCCCC
Confidence            5999999885  3332  36999999999752211      23469999998877653

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.15  E-value=0.025  Score=35.18  Aligned_cols=48  Identities=27%  Similarity=0.488  Sum_probs=34.6

Q ss_pred             CCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhh
Q psy15639          8 ARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQ   65 (135)
Q Consensus         8 ~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~   65 (135)
                      ...-.|.||+..|.-  ...  ..|.|..|..|..-.-.      ...+|.+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~--p~~--~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQN--PVV--TKCRHYFCESCALEHFR------ATPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCCS--EEE--CTTSCEEEHHHHHHHHH------HCSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhcC--eeE--ccCCCHhHHHHHHHHHH------CCCcCCCcCcccc
Confidence            345679999999853  322  47999999999743321      1458999999886

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.95  E-value=0.009  Score=35.31  Aligned_cols=56  Identities=21%  Similarity=0.522  Sum_probs=36.9

Q ss_pred             CCCCCCCchhhccccCCCC---ccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhcc
Q psy15639          6 PAARLGNCRVCLKSFKPDD---YSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSR   67 (135)
Q Consensus         6 p~~r~g~CRVClKsfkP~e---~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr   67 (135)
                      .......|.||+..|+...   -..+-..|.|..|.+|..---..      .-+|.+||..+..|
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~r   69 (69)
T 2ea6_A           11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKINHK   69 (69)
T ss_dssp             CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH------CSSCTTTCCCCCCC
T ss_pred             CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc------CCCCCCCCCccCcC
Confidence            3445678999999886431   11134579999999997422111      23799999887653

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=90.92  E-value=0.024  Score=37.97  Aligned_cols=48  Identities=25%  Similarity=0.535  Sum_probs=34.9

Q ss_pred             CCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhcc
Q psy15639         11 GNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSR   67 (135)
Q Consensus        11 g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr   67 (135)
                      ..|.||+.-|.  +...+  .|.|..|.+|..-.-.     .....|.+||..+..+
T Consensus        53 ~~C~IC~~~~~--~p~~~--~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~~  100 (124)
T 3fl2_A           53 FQCICCQELVF--RPITT--VCQHNVCKDCLDRSFR-----AQVFSCPACRYDLGRS  100 (124)
T ss_dssp             TBCTTTSSBCS--SEEEC--TTSCEEEHHHHHHHHH-----TTCCBCTTTCCBCCTT
T ss_pred             CCCCcCChHHc--CcEEe--eCCCcccHHHHHHHHh-----HCcCCCCCCCccCCCC
Confidence            46999999987  33333  8999999999742211     2345899999988763

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=90.88  E-value=0.074  Score=34.52  Aligned_cols=60  Identities=15%  Similarity=0.394  Sum_probs=44.3

Q ss_pred             CCCCCCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhh
Q psy15639          4 DKPAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQ   65 (135)
Q Consensus         4 ~kp~~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~   65 (135)
                      -.+....-.| ||++...++++---|..|+.-.=.+|..++..+. ++...|.|..|+++..
T Consensus         6 ~~~~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~-~~~~~~~C~~C~~~~~   65 (79)
T 1wep_A            6 SGMALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENA-VDIDIYHCPDCEAVFG   65 (79)
T ss_dssp             CCCCCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHH-TTCSBBCCTTTTTTSC
T ss_pred             cCccCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccc-cCCCeEECCCcccccC
Confidence            3455666778 9999988888888899997666667777765332 3357899999998654

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=90.71  E-value=0.1  Score=33.11  Aligned_cols=54  Identities=20%  Similarity=0.389  Sum_probs=37.5

Q ss_pred             CCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhcc
Q psy15639         11 GNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSR   67 (135)
Q Consensus        11 g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr   67 (135)
                      ..|.||++.-. +++--.|+.|..-.=-.|...+....  ....|.|..|..++..+
T Consensus        19 ~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~--~~~~w~C~~C~~~~~k~   72 (75)
T 2k16_A           19 WICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPP--EEMQWFCPKCANKIKKD   72 (75)
T ss_dssp             ECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCC--SSSCCCCTTTHHHHCSC
T ss_pred             cCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCC--CCCCEEChhccCchhhc
Confidence            45999998764 55677788887554455666654432  23689999999988654

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=90.60  E-value=0.05  Score=41.26  Aligned_cols=58  Identities=21%  Similarity=0.460  Sum_probs=44.5

Q ss_pred             CCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCC--CCCCceeehhhhhhhhcc
Q psy15639         10 LGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDEN--QDENTWRCSICRRKLQSR   67 (135)
Q Consensus        10 ~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~--ed~~~WrCSvCRRK~~sr   67 (135)
                      ...|.+|.+.|..---.|-|--|.+-||..|.++...-..  .....--|..|-.++..+
T Consensus       164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~~~  223 (226)
T 3zyq_A          164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNRK  223 (226)
T ss_dssp             CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHCC-
T ss_pred             CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhhhh
Confidence            4689999999998777899999999999999998543221  123466789998877654

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=90.11  E-value=0.061  Score=43.73  Aligned_cols=46  Identities=26%  Similarity=0.689  Sum_probs=35.4

Q ss_pred             CCCchhhccccCCCCccchhhhhhhh-hhcccccccCCCCCCCCCceeehhhhhhhhcccc
Q psy15639         10 LGNCRVCLKSFKPDDYSRVCYECHQK-VCEDCASYSKLDENQDENTWRCSICRRKLQSRAQ   69 (135)
Q Consensus        10 ~g~CRVClKsfkP~e~~~tC~eCqqk-VCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~q   69 (135)
                      ...|.||+-.|+  +..  -.-|.|. .|..|+.--          +.|.+||..+..+++
T Consensus       295 ~~~C~IC~~~~~--~~v--~lpCgH~~fC~~C~~~~----------~~CP~CR~~i~~~~~  341 (345)
T 3t6p_A          295 ERTCKVCMDKEV--SVV--FIPCGHLVVCQECAPSL----------RKCPICRGIIKGTVR  341 (345)
T ss_dssp             TCBCTTTSSSBC--CEE--EETTCCEEECTTTGGGC----------SBCTTTCCBCCEEEE
T ss_pred             CCCCCccCCcCC--ceE--EcCCCChhHhHHHHhcC----------CcCCCCCCCccCeEE
Confidence            357999998875  222  2379999 999998732          799999999887764

>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1

Probab=89.92  E-value=0.15  Score=36.69  Aligned_cols=55  Identities=22%  Similarity=0.577  Sum_probs=40.0

Q ss_pred             CCCCCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhh
Q psy15639          5 KPAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQ   65 (135)
Q Consensus         5 kp~~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~   65 (135)
                      .|..-+..|..|.+.|..---.|.|-.|.+.+|..|.++...      ..-.|..|-..+.
T Consensus        14 ~Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~------~vRVC~~C~~~~~   68 (120)
T 1y02_A           14 SPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN------GPRLCLLCQRFRA   68 (120)
T ss_dssp             ------CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----------CCEEHHHHHHHH
T ss_pred             cCccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC------CceECHHHHHHHh
Confidence            366777899999999987777799999999999999998754      2677999987653

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=89.69  E-value=0.081  Score=39.39  Aligned_cols=56  Identities=21%  Similarity=0.431  Sum_probs=42.9

Q ss_pred             CCCchhhccccCCCCccchhhhhhhhhhcccccccCC-CCC-CCCCceeehhhhhhhh
Q psy15639         10 LGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKL-DEN-QDENTWRCSICRRKLQ   65 (135)
Q Consensus        10 ~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl-~~~-ed~~~WrCSvCRRK~~   65 (135)
                      ...|.+|.+.|..-.-.|-|--|.+-||.+|.++... +.. .....--|..|-.+++
T Consensus       161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~~~~~~~~~~~~RvC~~C~~~l~  218 (220)
T 1dvp_A          161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQ  218 (220)
T ss_dssp             CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEEEEGGGTEEEEEEECHHHHHHHH
T ss_pred             CCccCCCCCccCCcccccccCCcCCEEChHHhCCeeecCcCCCCCCCEeCHHHHHHHh
Confidence            4689999999998777899999999999999997532 211 1234567888877665

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=89.15  E-value=0.036  Score=38.79  Aligned_cols=48  Identities=31%  Similarity=0.720  Sum_probs=35.4

Q ss_pred             CchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhcc
Q psy15639         12 NCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSR   67 (135)
Q Consensus        12 ~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr   67 (135)
                      .|.||+..|.-   ..+...|.|..|..|..-.-.     .....|.+||..+.++
T Consensus        56 ~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~~  103 (165)
T 2ckl_B           56 MCPICLDMLKN---TMTTKECLHRFCADCIITALR-----SGNKECPTCRKKLVSK  103 (165)
T ss_dssp             BCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHH-----TTCCBCTTTCCBCCSG
T ss_pred             CCcccChHhhC---cCEeCCCCChhHHHHHHHHHH-----hCcCCCCCCCCcCCCc
Confidence            79999999874   344568999999999754322     1246799999988654

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.53  E-value=0.049  Score=34.66  Aligned_cols=52  Identities=21%  Similarity=0.463  Sum_probs=34.1

Q ss_pred             CCCchhhccccCC-----------CCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhcc
Q psy15639         10 LGNCRVCLKSFKP-----------DDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSR   67 (135)
Q Consensus        10 ~g~CRVClKsfkP-----------~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr   67 (135)
                      ...|-||+..|..           ++.-.+-..|.|..+.+|..---..+      -+|.+||+.+..+
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~------~~CP~CR~~~~~~   77 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN------NRCPLCQQDWVVQ   77 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC------CBCTTTCCBCCEE
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC------CCCCCcCCCcchh
Confidence            4568888888853           34333444699999999975322211      2899999876543

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=88.48  E-value=0.027  Score=33.72  Aligned_cols=53  Identities=17%  Similarity=0.501  Sum_probs=34.4

Q ss_pred             CCchhhcc-ccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhccc
Q psy15639         11 GNCRVCLK-SFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRA   68 (135)
Q Consensus        11 g~CRVClK-sfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~   68 (135)
                      ..|.||+. .|.-......=..|.|..|..|..-...     ....+|.+||+.+..+.
T Consensus         4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~~~   57 (65)
T 1g25_A            4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV-----RGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH-----TTSSSCTTTCCCCSSCC
T ss_pred             CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH-----cCCCcCCCCCCcccccc
Confidence            46999998 5543321111147999999999753311     12468999999987654

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=88.47  E-value=0.33  Score=29.92  Aligned_cols=51  Identities=24%  Similarity=0.602  Sum_probs=35.6

Q ss_pred             CCCchhhccccCCCCccchhhhhhhhhhccccc--ccCCCCCCCCCceeehhhhhhhhccc
Q psy15639         10 LGNCRVCLKSFKPDDYSRVCYECHQKVCEDCAS--YSKLDENQDENTWRCSICRRKLQSRA   68 (135)
Q Consensus        10 ~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCAS--YSkl~~~ed~~~WrCSvCRRK~~sr~   68 (135)
                      ...|.||.++   + ---.|+.|..-.=-.|..  ....+    ...|.|..|..++..+.
T Consensus         5 ~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p----~g~W~C~~C~~~~~~~~   57 (60)
T 2puy_A            5 EDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIP----KGMWICPRCQDQMLKKE   57 (60)
T ss_dssp             CSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCC----CSCCCCHHHHHHHHHTT
T ss_pred             CCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCC----CCceEChhccChhhchh
Confidence            4579999984   4 356688887666566665  33322    35899999999887665

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=88.30  E-value=0.0092  Score=45.29  Aligned_cols=55  Identities=24%  Similarity=0.577  Sum_probs=39.4

Q ss_pred             CCchhhccccCCCCc---cchhhhhhhhhhcccccccCC-----CCCCCCCceeehhhhhhhh
Q psy15639         11 GNCRVCLKSFKPDDY---SRVCYECHQKVCEDCASYSKL-----DENQDENTWRCSICRRKLQ   65 (135)
Q Consensus        11 g~CRVClKsfkP~e~---~~tC~eCqqkVCEDCASYSkl-----~~~ed~~~WrCSvCRRK~~   65 (135)
                      ..|.||.|.+.++|+   ---|+.|+.-+=-.|...+..     .+..+...|.|..|+++-.
T Consensus         3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~   65 (183)
T 3lqh_A            3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP   65 (183)
T ss_dssp             CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred             CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence            469999999999997   667999997776667665531     0000124899999988743

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.82  E-value=0.042  Score=33.59  Aligned_cols=51  Identities=18%  Similarity=0.405  Sum_probs=35.6

Q ss_pred             CCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhccc
Q psy15639          9 RLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRA   68 (135)
Q Consensus         9 r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~   68 (135)
                      ....|.||+..|+-   -.+-..|.|..|..|..-.-..      .-+|.+||..+..+.
T Consensus        14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~~   64 (72)
T 2djb_A           14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY------SNRCPKCNIVVHQTQ   64 (72)
T ss_dssp             GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH------CSSCTTTCCCCCSSC
T ss_pred             CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc------CCcCCCcCcccCccc
Confidence            35679999998874   1223479999999997432211      357999999887654

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=87.81  E-value=0.29  Score=31.15  Aligned_cols=52  Identities=15%  Similarity=0.265  Sum_probs=38.4

Q ss_pred             CCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhh
Q psy15639         10 LGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKL   64 (135)
Q Consensus        10 ~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~   64 (135)
                      .-.| ||++....+++---|..|..-.=-.|..++....  ....|.|..|+++.
T Consensus        16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~--~~~~~~C~~C~~~~   67 (72)
T 1wee_A           16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADA--LPSKFLCFRCIELS   67 (72)
T ss_dssp             EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSC--CCSCCCCHHHHHHC
T ss_pred             ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCcccc--CCCcEECCCccCCC
Confidence            4468 8998876777888888886555557888876432  35789999998764

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=87.68  E-value=0.034  Score=35.78  Aligned_cols=48  Identities=17%  Similarity=0.422  Sum_probs=34.2

Q ss_pred             CCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhcc
Q psy15639         11 GNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSR   67 (135)
Q Consensus        11 g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr   67 (135)
                      ..|.||+..|+-  . .+...|.|..|..|..-.-..      .-+|.+||..+...
T Consensus        23 ~~C~IC~~~~~~--p-~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~   70 (99)
T 2y43_A           23 LRCGICFEYFNI--A-MIIPQCSHNYCSLCIRKFLSY------KTQCPTCCVTVTEP   70 (99)
T ss_dssp             TBCTTTCSBCSS--E-EECTTTCCEEEHHHHHHHHTT------CCBCTTTCCBCCGG
T ss_pred             CCcccCChhhCC--c-CEECCCCCHhhHHHHHHHHHC------CCCCCCCCCcCChh
Confidence            579999999873  2 233579999999997432221      24899999887653

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.30  E-value=0.19  Score=28.37  Aligned_cols=37  Identities=24%  Similarity=0.341  Sum_probs=25.2

Q ss_pred             CCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhccc
Q psy15639          9 RLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRA   68 (135)
Q Consensus         9 r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~   68 (135)
                      +.-.|.+|.|+|.-......                       ...+.|.+|++....+.
T Consensus        17 ~~~~C~~C~k~f~~~~~l~~-----------------------~~~~~C~~C~~~f~~~~   53 (73)
T 2ctu_A           17 RSQKCSKCGIIFIRRSTLSR-----------------------RKTPMCEKCRKDSCQEA   53 (73)
T ss_dssp             SEEECSSSCCEEECCCCCCC-----------------------SSSCCCHHHHHTCSCCC
T ss_pred             CCeeCCcccchhCCHHHhCc-----------------------CCCCCCCCCChhhcCHH
Confidence            45678888888875544333                       45688899988765544

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=86.27  E-value=0.029  Score=32.59  Aligned_cols=53  Identities=25%  Similarity=0.605  Sum_probs=35.7

Q ss_pred             CCCchhhccccCCC---CccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhccc
Q psy15639         10 LGNCRVCLKSFKPD---DYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRA   68 (135)
Q Consensus        10 ~g~CRVClKsfkP~---e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~   68 (135)
                      ...|.||+..|+..   +-..+-..|.|..|.+|..-.-.      ...+|.+||..+..+.
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~   58 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------NANTCPTCRKKINHKR   58 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH------HCSBCTTTCCBCTTTC
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH------cCCCCCCCCccCCccc
Confidence            45799999988642   11224457999999999742211      1348999999877643

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.39  E-value=0.15  Score=33.41  Aligned_cols=57  Identities=16%  Similarity=0.317  Sum_probs=36.9

Q ss_pred             CCCCCchhhccccCCCCccchhhhh---hhhhhcccccccCCCCCCCCCceeehhhhhhhhccc
Q psy15639          8 ARLGNCRVCLKSFKPDDYSRVCYEC---HQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRA   68 (135)
Q Consensus         8 ~r~g~CRVClKsfkP~e~~~tC~eC---qqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~   68 (135)
                      .-...|+||+-.|..++.-..=+.|   .|.+-.+|..--- ..   .+..+|.+||..+.-..
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl-~~---~~~~~CplCr~~~~~~~   72 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWI-KS---SDTRCCELCKYEFIMET   72 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHH-HH---HCCSBCSSSCCBCCCCC
T ss_pred             CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHH-hh---CCCCCCCCCCCeeecCc
Confidence            3457899999999887764321122   4888888864221 11   12468999999876443

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}

Probab=84.88  E-value=0.2  Score=30.94  Aligned_cols=57  Identities=19%  Similarity=0.595  Sum_probs=37.7

Q ss_pred             CCCchhhccccC-CCCccchhhhhhhhhhcccccccCCCCC--CCCCceeehhhhhhhhcc
Q psy15639         10 LGNCRVCLKSFK-PDDYSRVCYECHQKVCEDCASYSKLDEN--QDENTWRCSICRRKLQSR   67 (135)
Q Consensus        10 ~g~CRVClKsfk-P~e~~~tC~eCqqkVCEDCASYSkl~~~--ed~~~WrCSvCRRK~~sr   67 (135)
                      ...|.||.+.+. .++.--.|..|..-+=-.|-.-. ++..  .....|.|..|..+.+.|
T Consensus         6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~-l~~~~~~p~~~W~C~~C~~~~~~k   65 (66)
T 2yt5_A            6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPH-IDSSVIDSDEKWLCRQCVFATTTK   65 (66)
T ss_dssp             CCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSC-CCHHHHHSSCCCCCHHHHHTTSCC
T ss_pred             CCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCc-ccccccCCCCCEECCCCcCccccC
Confidence            467999998863 45666778888766555555432 2211  134689999999877654

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=84.77  E-value=0.37  Score=32.66  Aligned_cols=47  Identities=21%  Similarity=0.562  Sum_probs=32.2

Q ss_pred             CchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhh
Q psy15639         12 NCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRK   63 (135)
Q Consensus        12 ~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK   63 (135)
                      .| ||++.... .+--.|..|..-.=-.|..+...   +.+..|.|..|+.+
T Consensus        30 rC-iC~~~~~~-~~mi~Cd~C~~w~H~~C~~~~~~---~~p~~w~C~~C~~~   76 (98)
T 2lv9_A           30 RC-ICGFTHDD-GYMICCDKCSVWQHIDCMGIDRQ---HIPDTYLCERCQPR   76 (98)
T ss_dssp             CC-TTSCCSCS-SCEEEBTTTCBEEETTTTTCCTT---SCCSSBCCTTTSSS
T ss_pred             Ee-ECCCccCC-CcEEEcCCCCCcCcCcCCCCCcc---CCCCCEECCCCcCC
Confidence            48 89887654 45566888876666677776433   23457999999743

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=84.21  E-value=0.038  Score=32.94  Aligned_cols=55  Identities=22%  Similarity=0.547  Sum_probs=36.9

Q ss_pred             CCCCCCchhhccccCCC---CccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhcc
Q psy15639          7 AARLGNCRVCLKSFKPD---DYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSR   67 (135)
Q Consensus         7 ~~r~g~CRVClKsfkP~---e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr   67 (135)
                      ..-...|.||+..|...   +-..+-..|.|..|.+|..-.-. .     .-+|.+||..+...
T Consensus         7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~-----~~~CP~Cr~~~~~~   64 (71)
T 3ng2_A            7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-N-----ANTCPTCRKKINHK   64 (71)
T ss_dssp             CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH-H-----CSBCTTTCCBCCCC
T ss_pred             CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH-c-----CCCCCCCCCccChh
Confidence            34456799999988542   22224568999999999842211 1     13899999887654

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=84.15  E-value=0.084  Score=34.45  Aligned_cols=56  Identities=11%  Similarity=0.324  Sum_probs=36.4

Q ss_pred             CCchhhccccCCCCc--------------cchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhcc
Q psy15639         11 GNCRVCLKSFKPDDY--------------SRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSR   67 (135)
Q Consensus        11 g~CRVClKsfkP~e~--------------~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr   67 (135)
                      ..|-||+..|...+.              ...-..|.|..|.+|..--- .+......-.|.+||+.+..+
T Consensus        26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl-~~~~~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMY-CNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHH-HHTCCSSCCBCTTTCCBSSSC
T ss_pred             CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHH-HcccCCCCCcCCCCCCccCCC
Confidence            589999999965431              11145699999999965221 111112345899999887655

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}

Probab=84.06  E-value=0.72  Score=29.70  Aligned_cols=49  Identities=31%  Similarity=0.650  Sum_probs=37.5

Q ss_pred             CCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhh
Q psy15639          9 RLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRR   62 (135)
Q Consensus         9 r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRR   62 (135)
                      ....| ||++... +++---|..|+.-.=..|...+...   -...|.|+.|++
T Consensus        18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~---~~~~~~C~~C~~   66 (68)
T 3o70_A           18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSN---VPEVFVCQKCRD   66 (68)
T ss_dssp             TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTS---CCSSCCCHHHHT
T ss_pred             CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCccc---CCCcEECCCCCC
Confidence            45578 9998765 7788889998877667788877642   356999999975

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=83.84  E-value=0.5  Score=32.25  Aligned_cols=48  Identities=25%  Similarity=0.717  Sum_probs=26.6

Q ss_pred             CchhhccccCCCCccchhhhhhhhhhcccc--cccCCCCCCCCCceeehhhhhh
Q psy15639         12 NCRVCLKSFKPDDYSRVCYECHQKVCEDCA--SYSKLDENQDENTWRCSICRRK   63 (135)
Q Consensus        12 ~CRVClKsfkP~e~~~tC~eCqqkVCEDCA--SYSkl~~~ed~~~WrCSvCRRK   63 (135)
                      .|.||++.-..++..-.|+.|....=-.|.  .+.+.++    ..|.|..|+.|
T Consensus        63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~----~~W~C~~C~~k  112 (112)
T 3v43_A           63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPK----GMWICQICRPR  112 (112)
T ss_dssp             CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCS----SCCCCTTTSCC
T ss_pred             ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCC----CCeECCCCCCc
Confidence            466666543333445556666555545554  2333332    37999998764

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=83.83  E-value=0.036  Score=37.07  Aligned_cols=49  Identities=20%  Similarity=0.499  Sum_probs=33.7

Q ss_pred             CCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhc
Q psy15639          9 RLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQS   66 (135)
Q Consensus         9 r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~s   66 (135)
                      ....|.||+..|+.  ...  ..|.|..|.+|..-.-...     ..+|.+||..+..
T Consensus        17 ~~~~C~IC~~~~~~--p~~--~~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~   65 (118)
T 3hct_A           17 SKYECPICLMALRE--AVQ--TPCGHRFCKACIIKSIRDA-----GHKCPVDNEILLE   65 (118)
T ss_dssp             GGGBCTTTCSBCSS--EEE--CTTSCEEEHHHHHHHHHHH-----CSBCTTTCCBCCG
T ss_pred             CCCCCCcCChhhcC--eEE--CCcCChhhHHHHHHHHhhC-----CCCCCCCCCCcCH
Confidence            34589999999863  222  2799999999975322111     1289999977654

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=83.70  E-value=0.19  Score=30.72  Aligned_cols=51  Identities=16%  Similarity=0.100  Sum_probs=36.2

Q ss_pred             CCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhcc
Q psy15639          8 ARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSR   67 (135)
Q Consensus         8 ~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr   67 (135)
                      ...-.|.||+.-|+  +...+  .|.|..|..|..-.-.     ....+|.+||..+...
T Consensus         6 ~~~~~C~IC~~~~~--~Pv~~--~CgH~fc~~Ci~~~~~-----~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            6 PEYFRCPISLELMK--DPVIV--STGQTYERSSIQKWLD-----AGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSSCTTTSCCCS--SEEEE--TTTEEEEHHHHHHHHT-----TTCCBCTTTCCBCSSC
T ss_pred             cccCCCCCcccccc--CCEEc--CCCCeecHHHHHHHHH-----HCcCCCCCCcCCCChh
Confidence            44678999999886  33333  7999999999743221     1256899999887654

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=82.85  E-value=0.31  Score=32.37  Aligned_cols=45  Identities=18%  Similarity=0.391  Sum_probs=32.4

Q ss_pred             CCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhc
Q psy15639         11 GNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQS   66 (135)
Q Consensus        11 g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~s   66 (135)
                      -.|.||+..|+-  ...+ ..|.|..|..|..-.-.        ..|.+||..+..
T Consensus        23 ~~C~IC~~~~~~--pv~~-~~CgH~fC~~Ci~~~~~--------~~CP~Cr~~~~~   67 (117)
T 1jm7_B           23 LRCSRCTNILRE--PVCL-GGCEHIFCSNCVSDCIG--------TGCPVCYTPAWI   67 (117)
T ss_dssp             TSCSSSCSCCSS--CBCC-CSSSCCBCTTTGGGGTT--------TBCSSSCCBCSC
T ss_pred             CCCCCCChHhhC--ccEe-CCCCCHHHHHHHHHHhc--------CCCcCCCCcCcc
Confidence            479999999852  2222 26999999999853321        579999998743

>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2

Probab=82.71  E-value=0.47  Score=30.49  Aligned_cols=56  Identities=16%  Similarity=0.455  Sum_probs=41.0

Q ss_pred             CCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhcc
Q psy15639         10 LGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSR   67 (135)
Q Consensus        10 ~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr   67 (135)
                      .-.| ||++.+.++++---|..|+.-.=.+|...+..+. ++...|.|..|+++....
T Consensus        10 ~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~-~~~~~~~C~~C~~~~~~~   65 (75)
T 3kqi_A           10 PVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEA-PDIDIYHCPNCEKTHGKS   65 (75)
T ss_dssp             CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTG-GGBSSCCCHHHHHHHCCC
T ss_pred             eeEE-ECCCcCCCCCCEEEcCCCCCCEeccccccccccc-CCCCEEECCCCcccCCCC
Confidence            3445 8999888888888899988766667777765432 234689999999886543

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=82.38  E-value=0.3  Score=29.81  Aligned_cols=16  Identities=19%  Similarity=0.470  Sum_probs=12.2

Q ss_pred             CCCCCCchhhccccCC
Q psy15639          7 AARLGNCRVCLKSFKP   22 (135)
Q Consensus         7 ~~r~g~CRVClKsfkP   22 (135)
                      ..+.-.|.+|.|.|.-
T Consensus        14 ~~~~~~C~~C~~~f~~   29 (106)
T 2ee8_A           14 TKKEFICKFCGRHFTK   29 (106)
T ss_dssp             CCCCCBCSSSCCBCSS
T ss_pred             CCcCeECCCCCCccCC
Confidence            3455689999999964

>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=82.25  E-value=0.56  Score=30.39  Aligned_cols=55  Identities=24%  Similarity=0.413  Sum_probs=37.8

Q ss_pred             CCCCchhhccccCCCCccchhh--hhhhhhhcccccccCCCCC---CCCCceeehhhhhhhh
Q psy15639          9 RLGNCRVCLKSFKPDDYSRVCY--ECHQKVCEDCASYSKLDEN---QDENTWRCSICRRKLQ   65 (135)
Q Consensus         9 r~g~CRVClKsfkP~e~~~tC~--eCqqkVCEDCASYSkl~~~---ed~~~WrCSvCRRK~~   65 (135)
                      -.-.| ||++.. .+.+---|.  .|+.-.=-.|..++.....   +....|.|..|+++.+
T Consensus        15 ~~~~C-iC~~~~-~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~   74 (78)
T 1wew_A           15 IKVRC-VCGNSL-ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG   74 (78)
T ss_dssp             CCCCC-SSCCCC-CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred             CCEEe-ECCCcC-CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence            34568 899873 455666677  6755444568888776532   4568999999998754

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=82.17  E-value=0.15  Score=33.24  Aligned_cols=49  Identities=20%  Similarity=0.416  Sum_probs=34.8

Q ss_pred             CCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhcc
Q psy15639         10 LGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSR   67 (135)
Q Consensus        10 ~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr   67 (135)
                      .-.|.||+..|+-  . .+...|.|..|..|..-.-..      .-.|.+||..+...
T Consensus        15 ~~~C~IC~~~~~~--p-~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           15 HLMCVLCGGYFID--A-TTIIECLHSFCKTCIVRYLET------SKYCPICDVQVHKT   63 (108)
T ss_dssp             GTBCTTTSSBCSS--E-EEETTTCCEEEHHHHHHHHTS------CSBCTTTCCBSCSS
T ss_pred             cCCCccCChHHhC--c-CEeCCCCChhhHHHHHHHHHh------CCcCcCCCcccccc
Confidence            4579999999863  2 333589999999997432111      25899999988764

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=80.61  E-value=0.49  Score=29.47  Aligned_cols=14  Identities=29%  Similarity=0.857  Sum_probs=10.6

Q ss_pred             CCCCceeehhhhhh
Q psy15639         50 QDENTWRCSICRRK   63 (135)
Q Consensus        50 ed~~~WrCSvCRRK   63 (135)
                      +-+..|+|.+|+-.
T Consensus        26 ~lP~dw~CP~Cg~~   39 (46)
T 6rxn_A           26 QLPDDWCCPVCGVS   39 (46)
T ss_dssp             GSCTTCBCTTTCCB
T ss_pred             hCCCCCcCcCCCCc
Confidence            44667999999853

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=80.59  E-value=0.78  Score=29.91  Aligned_cols=52  Identities=19%  Similarity=0.548  Sum_probs=37.6

Q ss_pred             CCCCchhhcccc-CCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhh
Q psy15639          9 RLGNCRVCLKSF-KPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKL   64 (135)
Q Consensus         9 r~g~CRVClKsf-kP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~   64 (135)
                      -...|.||.+.- ..++.--.|+.|..-+=-.|......+    ...|.|..|..+.
T Consensus        15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP----~g~W~C~~C~~~~   67 (71)
T 2ku3_A           15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIP----EGQWLCRHCLQSR   67 (71)
T ss_dssp             SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCC----SSCCCCHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCC----CCCcCCccCcCcC
Confidence            356799999874 455566788888877767776665433    3589999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	135
d1zbdb_	124	g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat	5e-05
d1joca1	64	g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens)	0.003

>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Effector domain of rabphilin-3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 5e-05
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 12  NCRVCLKSFKP-DDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRAQ 69
            C +C +        S VC +C + VC  C   +    N+    W C IC  + +   +
Sbjct: 50  RCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSN--NRPHPVWLCKICLEQREVWKR 106

>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (73), Expect = 0.003
 Identities = 14/54 (25%), Positives = 21/54 (38%)

Query: 12 NCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQ 65
          NC  C K F        C +C    C +C++ + L  +  +    C  C   LQ
Sbjct: 10 NCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFNDLQ 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	135
d1zbdb_	124	Effector domain of rabphilin-3a {Rat (Rattus norve	98.04
d1joca1	64	Eea1 {Human (Homo sapiens) [TaxId: 9606]}	96.21
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	96.01
d1y02a2	51	Rififylin (FYVE-RING finger protein Sakura) {Human	95.56
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	95.19
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	95.13
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	94.93
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	94.45
d1wfka_	88	Zinc finger FYVE domain containing protein 19 {Mou	93.56
d1vfya_	67	vps27p protein {Baker's yeast (Saccharomyces cerev	92.98
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	92.78
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	92.57
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	92.13
d1dvpa2	72	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	91.84
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	91.82
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	90.59
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	87.59
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	85.83
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	84.53
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	83.67
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	81.79
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	81.29
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	80.8
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	80.44

>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Effector domain of rabphilin-3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.04  E-value=8.7e-07  Score=60.76  Aligned_cols=57  Identities=23%  Similarity=0.627  Sum_probs=45.6

Q ss_pred             CCCchhhccccCC-CCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhccc
Q psy15639         10 LGNCRVCLKSFKP-DDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRA   68 (135)
Q Consensus        10 ~g~CRVClKsfkP-~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~   68 (135)
                      ...|.+|.+.|.. ....+.|..|...||.+|..+.....  ....|.|.+|...+....
T Consensus        48 ~~~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C~~~~~~~~--~~~~w~C~~C~k~re~~~  105 (124)
T d1zbdb_          48 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNR--PHPVWLCKICLEQREVWK  105 (124)
T ss_dssp             SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSS--SSCCEEEHHHHHHHHHHH
T ss_pred             CCcCcccCCcccCCCCCCCcCccCCcccccCCCCCccCCC--CCCCEECccCcchHHHHH
Confidence            4679999999997 45678999999999999988754332  346799999999886544

>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0017  Score=40.08  Aligned_cols=60  Identities=23%  Similarity=0.550  Sum_probs=46.8

Q ss_pred             CCCCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhh
Q psy15639          6 PAARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQ   65 (135)
Q Consensus         6 p~~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~   65 (135)
                      |......|.+|.+.|.--.-.|.|--|.+.||.+|+++..+........=-|..|-.+|+
T Consensus         4 ~d~~~~~C~~C~~~F~~~~rrHHCR~CG~v~C~~Cs~~~~~~~~~~~~~RVC~~C~~~l~   63 (64)
T d1joca1           4 EDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFNDLQ   63 (64)
T ss_dssp             CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTTCSSCEEECHHHHHHTT
T ss_pred             CcccCCcCcCcCCcccCCccccchhhhCCeecccccCCceecCCCCCccEehHHHHHHhc
Confidence            456677899999999988888999999999999999987655444444456777766554

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.01  E-value=0.00055  Score=41.07  Aligned_cols=48  Identities=21%  Similarity=0.510  Sum_probs=38.8

Q ss_pred             CCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhh
Q psy15639         11 GNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKL   64 (135)
Q Consensus        11 g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~   64 (135)
                      ..|.||+..|..+|.-.+...|.|..|.+|..---..+      -+|.+||+.+
T Consensus         6 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~------~~CP~CR~~i   53 (55)
T d1iyma_           6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH------STCPLCRLTV   53 (55)
T ss_dssp             CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC------CSCSSSCCCS
T ss_pred             CCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhC------CcCCCCCCEe
Confidence            46999999999998888888899999999986543222      2699999865

>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Rififylin (FYVE-RING finger protein Sakura)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0029  Score=38.26  Aligned_cols=47  Identities=23%  Similarity=0.688  Sum_probs=37.8

Q ss_pred             CchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhh
Q psy15639         12 NCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKL   64 (135)
Q Consensus        12 ~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~   64 (135)
                      +|-+|.+.|.--.-.|.|-.|.+.+|.+|.++..      ...|.|..|.+-.
T Consensus         2 ~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~~~~------~~~RvC~~C~~~r   48 (51)
T d1y02a2           2 SCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG------NGPRLCLLCQRFR   48 (51)
T ss_dssp             CCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----------CCEEHHHHHHH
T ss_pred             CccccCCcccCCccCcccccCCcccCccccCCCC------CCCeECHhHhhHh
Confidence            6999999999888789999999999999988643      3459999997543

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0024  Score=41.03  Aligned_cols=51  Identities=20%  Similarity=0.569  Sum_probs=35.4

Q ss_pred             CCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhccc
Q psy15639         11 GNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRA   68 (135)
Q Consensus        11 g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~   68 (135)
                      -.|.||+.-|+  ++..+  .|.|..|.+|-.-.-..   ..+.++|.+||..+..+.
T Consensus        22 l~CpIC~~~~~--~pv~~--~CgH~fC~~Ci~~~~~~---~~~~~~CP~Cr~~~~~~~   72 (103)
T d1jm7a_          22 LECPICLELIK--EPVST--KCDHIFCKFCMLKLLNQ---KKGPSQCPLCKNDITKRS   72 (103)
T ss_dssp             TSCSSSCCCCS--SCCBC--TTSCCCCSHHHHHHHHS---SSSSCCCTTTSCCCCTTT
T ss_pred             cCCCccCchhC--CeEEc--CCCCchhhHHHHHHHHH---CCCCCcCcCCCCcCChhh
Confidence            36999999885  45443  69999999996422111   124568999998886554

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.0011  Score=38.93  Aligned_cols=48  Identities=23%  Similarity=0.610  Sum_probs=35.2

Q ss_pred             CchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhh
Q psy15639         12 NCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKL   64 (135)
Q Consensus        12 ~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~   64 (135)
                      .|.||+-.|.+++...+=..|.|..|.+|...-...     .+.+|.+||+.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~-----~~~~CP~CR~~~   49 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-----ENGLCPACRKPY   49 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTT-----SCCBCTTTCCBC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhh-----cCCCCCccCCcC
Confidence            489999999887654333379999999996553322     235899999765

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.93  E-value=0.0066  Score=36.33  Aligned_cols=56  Identities=20%  Similarity=0.546  Sum_probs=40.5

Q ss_pred             CCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhh
Q psy15639          8 ARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKL   64 (135)
Q Consensus         8 ~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~   64 (135)
                      .-...|.||++....+++--.|..|++-+=-+|..+.. .+.++...|.|..|++|.
T Consensus         4 ~~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~-~~~~~~~~w~C~~C~~~~   59 (64)
T d1we9a_           4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITP-ARAEHIKQYKCPSCSNKS   59 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCT-TGGGGCSSCCCHHHHTTT
T ss_pred             CCCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcCh-HHCCCCCeEECcCCcCcC
Confidence            34578999999988888766788888766666665532 222344679999999763

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=94.45  E-value=0.0012  Score=39.23  Aligned_cols=53  Identities=17%  Similarity=0.350  Sum_probs=36.8

Q ss_pred             CCCchhhccccCCCCccc-hhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhc
Q psy15639         10 LGNCRVCLKSFKPDDYSR-VCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQS   66 (135)
Q Consensus        10 ~g~CRVClKsfkP~e~~~-tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~s   66 (135)
                      ...|+||+..+....... .|.+|.|.++.+|..---..    ...++|.+||.+...
T Consensus         6 ~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~----~~~~~CP~Cr~~~~~   59 (60)
T d1vyxa_           6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI----SRNTACQICGVVYNT   59 (60)
T ss_dssp             CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH----HTCSBCTTTCCBCCC
T ss_pred             CCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhh----CCCCCCcccCCeeec
Confidence            356999999887554432 57889999999997532111    124689999987543

>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Zinc finger FYVE domain containing protein 19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.56  E-value=0.014  Score=38.14  Aligned_cols=60  Identities=20%  Similarity=0.453  Sum_probs=45.4

Q ss_pred             CCCchhhccccCCCCccchhhhhhhhhhcccccccC-CCCCCCCCceeehhhhhhhhcccc
Q psy15639         10 LGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSK-LDENQDENTWRCSICRRKLQSRAQ   69 (135)
Q Consensus        10 ~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSk-l~~~ed~~~WrCSvCRRK~~sr~q   69 (135)
                      ...|.+|.+.|.--.-.|.|--|.+.+|.+|..+.. ++...+...=-|..|-.++..+..
T Consensus         9 ~s~C~~C~~~Fs~~~rrhhCr~CG~vfC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l~~~~~   69 (88)
T d1wfka_           9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGSS   69 (88)
T ss_dssp             CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHCCC
T ss_pred             cCcCcccCchhccccccccccccChhhChHHhCCccccCCCCCCCCeECHHHHHHHHhccc
Confidence            456999999998777789999999999999998753 434333344568889777766543

>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: vps27p protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.98  E-value=0.016  Score=35.79  Aligned_cols=35  Identities=26%  Similarity=0.565  Sum_probs=31.6

Q ss_pred             CCchhhccccCCCCccchhhhhhhhhhcccccccC
Q psy15639         11 GNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSK   45 (135)
Q Consensus        11 g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSk   45 (135)
                      ..|.+|.+.|..-.-.|.|--|.+.+|.+|.++..
T Consensus         6 ~~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~~~~   40 (67)
T d1vfya_           6 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSI   40 (67)
T ss_dssp             SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEE
T ss_pred             cccccCCCcccCcccccccccCCCEecccccCCcE
Confidence            47999999999888889999999999999998763

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=0.011  Score=37.33  Aligned_cols=47  Identities=17%  Similarity=0.416  Sum_probs=33.2

Q ss_pred             CCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhccc
Q psy15639         11 GNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRA   68 (135)
Q Consensus        11 g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~   68 (135)
                      -.|.||+.-|+  +. .++..|.|..|.+|..---  .      -.|.+||..+..+.
T Consensus        23 l~C~IC~~~~~--~p-v~~~~CgH~fC~~Ci~~~~--~------~~CP~Cr~~~~~~~   69 (97)
T d1jm7b_          23 LRCSRCTNILR--EP-VCLGGCEHIFCSNCVSDCI--G------TGCPVCYTPAWIQD   69 (97)
T ss_dssp             TSCSSSCSCCS--SC-BCCCSSSCCBCTTTGGGGT--T------TBCSSSCCBCSCSS
T ss_pred             CCCccCCchhh--cC-ceeCCCCCchhHHHHHHHH--h------ccccccCCcCchhh
Confidence            36999999995  22 3456799999999964221  1      25999997765543

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.57  E-value=0.016  Score=36.21  Aligned_cols=56  Identities=14%  Similarity=0.446  Sum_probs=38.2

Q ss_pred             CCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhcc
Q psy15639         10 LGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSR   67 (135)
Q Consensus        10 ~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr   67 (135)
                      +--| ||++.+.++++---|..|..-.=.+|..+..... .+...|.|..|+++...+
T Consensus        12 pv~C-iC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~-~~~~~~~C~~C~~~~gp~   67 (79)
T d1wepa_          12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENA-VDIDIYHCPDCEAVFGPS   67 (79)
T ss_dssp             CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHH-TTCSBBCCTTTTTTSCSC
T ss_pred             CeEe-ECCCccCCCCcEEECCCCCCcEeccccCcchhcC-CCCCEEECccCcCCcCCc
Confidence            4457 9999999998877899997554445555543322 223469999998875443

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=92.13  E-value=0.0085  Score=36.19  Aligned_cols=52  Identities=17%  Similarity=0.450  Sum_probs=36.9

Q ss_pred             CCCCCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhccc
Q psy15639          8 ARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRA   68 (135)
Q Consensus         8 ~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~   68 (135)
                      .-+..|-||+..|+-.   .++..|.|..|.+|..-.- ..     .=+|.+||..+..-.
T Consensus         3 ~~~d~C~IC~~~~~~~---~~~~~C~H~Fc~~Ci~~w~-~~-----~~~CP~CR~~i~~~~   54 (68)
T d1chca_           3 TVAERCPICLEDPSNY---SMALPCLHAFCYVCITRWI-RQ-----NPTCPLCKVPVESVV   54 (68)
T ss_dssp             CCCCCCSSCCSCCCSC---EEETTTTEEESTTHHHHHH-HH-----SCSTTTTCCCCCCEE
T ss_pred             CCCCCCccCCcCccCC---cEEeCCCCcCcHHHHHHHH-Hh-----CCcCCCCCcchHhhc
Confidence            3467899999999632   3568899999999984221 11     126999999875433

>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.84  E-value=0.034  Score=34.78  Aligned_cols=56  Identities=21%  Similarity=0.422  Sum_probs=41.4

Q ss_pred             CCCchhhccccCCCCccchhhhhhhhhhcccccccCCC-C-CCCCCceeehhhhhhhh
Q psy15639         10 LGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLD-E-NQDENTWRCSICRRKLQ   65 (135)
Q Consensus        10 ~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~-~-~ed~~~WrCSvCRRK~~   65 (135)
                      ...|-+|.+.|.--.-.|.|-.|.+.||.+|.+|...- . ..+...=.|..|=.+|+
T Consensus        13 ~~~C~~C~~~F~~~~rrhhCr~CG~~~C~~C~~~~~~lp~~~~~~p~RVC~~C~~~l~   70 (72)
T d1dvpa2          13 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQ   70 (72)
T ss_dssp             CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEEEEGGGTEEEEEEECHHHHHHHH
T ss_pred             CCccccCCCcccCccccccccccCCeeChhhhCCceECcccCCCCCCEeCHHHHHHHH
Confidence            45799999999887778999999999999999875432 1 11223346777766664

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.82  E-value=0.022  Score=34.16  Aligned_cols=44  Identities=20%  Similarity=0.530  Sum_probs=32.2

Q ss_pred             CCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhcc
Q psy15639         11 GNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSR   67 (135)
Q Consensus        11 g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr   67 (135)
                      -.|.||+..|+  +...+  -|.|..|.+|..         ...-+|.+||+.+...
T Consensus         7 l~C~IC~~~~~--~p~~l--pCgH~fC~~Ci~---------~~~~~CP~Cr~~~~~~   50 (56)
T d1bora_           7 LRCQQCQAEAK--CPKLL--PCLHTLCSGCLE---------ASGMQCPICQAPWPLG   50 (56)
T ss_dssp             SSCSSSCSSCB--CCSCS--TTSCCSBTTTCS---------SSSSSCSSCCSSSSCC
T ss_pred             CCCcccCcccC--CCEEe--cCCCHHhHHHHH---------cCCCcCcCCCCcccCC
Confidence            47999999986  33332  599999999963         1244799999887543

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.59  E-value=0.063  Score=32.47  Aligned_cols=51  Identities=16%  Similarity=0.299  Sum_probs=37.0

Q ss_pred             CchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhh
Q psy15639         12 NCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQ   65 (135)
Q Consensus        12 ~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~   65 (135)
                      .| ||.+....+++.-.|..|+.-.=-.|..++....  ....|.|..|+.+..
T Consensus        18 ~C-~C~~~~~~~~~mv~Cd~C~~w~H~~C~g~~~~~~--~~~~~~C~~C~~~~~   68 (72)
T d1weea_          18 DC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADA--LPSKFLCFRCIELSG   68 (72)
T ss_dssp             CC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSC--CCSCCCCHHHHHHCS
T ss_pred             Ee-eCCCCcCCCCeEEEeCCCCCcCchhhcCCccccC--CCCcEECcCCcCcCC
Confidence            47 8998777777777898887666666776654332  235799999988754

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.59  E-value=0.018  Score=34.63  Aligned_cols=52  Identities=21%  Similarity=0.462  Sum_probs=34.5

Q ss_pred             CCchhhcccc--CCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhhccc
Q psy15639         11 GNCRVCLKSF--KPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQSRA   68 (135)
Q Consensus        11 g~CRVClKsf--kP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~sr~   68 (135)
                      ..|.||+-.+  .++....+ ..|.|..|.+|..-.-...     .-+|.+||..+....
T Consensus         4 ~~CpIC~~~~~~~~~~~~~~-~~C~H~fc~~Ci~~~~~~~-----~~~CP~CR~~i~~~~   57 (65)
T d1g25a_           4 QGCPRCKTTKYRNPSLKLMV-NVCGHTLCESCVDLLFVRG-----AGNCPECGTPLRKSN   57 (65)
T ss_dssp             TCCSTTTTHHHHCSSCCEEE-CTTCCCEEHHHHHHHHHTT-----SSSCTTTCCCCSSCC
T ss_pred             CCCCcCCceeecCCceEEEe-CccChHhhHHHHHHHhCcC-----cCCCCCCCcCccccc
Confidence            4799999764  34444344 5799999999986432111     125999998875443

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.83  E-value=0.1  Score=32.30  Aligned_cols=58  Identities=26%  Similarity=0.532  Sum_probs=36.7

Q ss_pred             CCchhhccccCCCC-ccchhhhhhhhhhcccccccCC--CCCCCCCceeehhhhhhhhccc
Q psy15639         11 GNCRVCLKSFKPDD-YSRVCYECHQKVCEDCASYSKL--DENQDENTWRCSICRRKLQSRA   68 (135)
Q Consensus        11 g~CRVClKsfkP~e-~~~tC~eCqqkVCEDCASYSkl--~~~ed~~~WrCSvCRRK~~sr~   68 (135)
                      ..|.||.+....+. .--.|..|..-+=-+|..-...  ....+...|.|..|.++..-+.
T Consensus        17 ~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~~~~~   77 (88)
T d1weva_          17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA   77 (88)
T ss_dssp             CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCST
T ss_pred             CCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCchHhhhh
Confidence            45999998776543 3444888877666667553221  1123345799999987655433

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.53  E-value=0.035  Score=35.40  Aligned_cols=56  Identities=11%  Similarity=0.325  Sum_probs=35.2

Q ss_pred             CCCchhhccccCCCC--------------ccchhhhhhhhhhccccc-ccCCCCCCCCCceeehhhhhhhhcc
Q psy15639         10 LGNCRVCLKSFKPDD--------------YSRVCYECHQKVCEDCAS-YSKLDENQDENTWRCSICRRKLQSR   67 (135)
Q Consensus        10 ~g~CRVClKsfkP~e--------------~~~tC~eCqqkVCEDCAS-YSkl~~~ed~~~WrCSvCRRK~~sr   67 (135)
                      ...|-||+..|....              ....-..|.|..|.+|-- +-+...  ....-+|.+||+.+.-.
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~--~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN--KDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC--CSSCCBCTTTCCBSSSC
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcC--cCCCCccccccchhccC
Confidence            467999999886432              122335799999999953 111111  12235799999877544

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.67  E-value=0.1  Score=32.07  Aligned_cols=77  Identities=16%  Similarity=0.420  Sum_probs=46.0

Q ss_pred             CCCCCchhhccccCCCCccchhhhhhhhhhcccccc-cC--CCCCCCCCceeehhhhhhhhccccccccccccccccchH
Q psy15639          8 ARLGNCRVCLKSFKPDDYSRVCYECHQKVCEDCASY-SK--LDENQDENTWRCSICRRKLQSRAQPVLSQNSTDSLLDVP   84 (135)
Q Consensus         8 ~r~g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASY-Sk--l~~~ed~~~WrCSvCRRK~~sr~qp~~~q~stds~l~vp   84 (135)
                      +....|.||+--|..+++... ..|.|..|.+|... -+  ..+. .....+|..|+-+..    ..+.++.-..+|+--
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~-~~C~H~fC~~Cl~~~~~~~i~~~-~~~~i~CP~~~C~~~----~~~~~~~i~~ll~~~   76 (94)
T d1wima_           3 SGSSGCKLCLGEYPVEQMTTI-AQCQCIFCTLCLKQYVELLIKEG-LETAISCPDAACPKQ----GHLQENEIECMVAAE   76 (94)
T ss_dssp             CSBCCCSSSCCCCBGGGEEEE-TTTTEEEEHHHHHHHHHHHHHHC-SCCCEECSCTTCSSC----CEECHHHHHHHSCHH
T ss_pred             CCCCcCccCCCcccCCceEEE-CCCCCEeCCcCHHHHHHHHHhcC-CccccCCcCCCCCCC----cccCHHHHHHhCCHH
Confidence            345689999999987776553 57999999999753 22  1121 234568987654321    123333334555555


Q ss_pred             HHHHHH
Q psy15639         85 VLEALQ   90 (135)
Q Consensus        85 vlealq   90 (135)
                      ++|.++
T Consensus        77 ~~~ky~   82 (94)
T d1wima_          77 IMQRYK   82 (94)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=81.79  E-value=0.2  Score=29.94  Aligned_cols=34  Identities=26%  Similarity=0.711  Sum_probs=21.8

Q ss_pred             CchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhh
Q psy15639         12 NCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRK   63 (135)
Q Consensus        12 ~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK   63 (135)
                      -|++|+--+.|++=             |     .+.-.+-+..|+|.+|+-.
T Consensus         5 ~C~~CgyiYd~~~G-------------d-----gt~Fe~LP~dw~CP~C~a~   38 (45)
T d6rxna_           5 VCNVCGYEYDPAEH-------------D-----NVPFDQLPDDWCCPVCGVS   38 (45)
T ss_dssp             EETTTCCEECGGGG-------------T-----TCCGGGSCTTCBCTTTCCB
T ss_pred             EeCCCCeEECcccC-------------C-----CCCHHHCCCCCCCcCCCCc
Confidence            47777766666542             1     2334456789999999743

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.29  E-value=0.34  Score=29.31  Aligned_cols=51  Identities=24%  Similarity=0.548  Sum_probs=33.5

Q ss_pred             CCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhh
Q psy15639         11 GNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKL   64 (135)
Q Consensus        11 g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~   64 (135)
                      +.|++|..-.++++ .-.|..|..-.-..|....- .+ -....|.|..|+.+.
T Consensus         5 d~c~~C~~C~~~~~-ll~Cd~C~~~~H~~C~~p~l-~~-~p~~~W~C~~C~~~~   55 (70)
T d1fp0a1           5 DSATICRVCQKPGD-LVMCNQCEFCFHLDCHLPAL-QD-VPGEEWSCSLCHVLP   55 (70)
T ss_dssp             SSSSCCSSSCSSSC-CEECTTSSCEECTTSSSTTC-CC-CCSSSCCCCSCCCCC
T ss_pred             CCCCCCCCCCCcCE-EEECCCCChhhccccCCCCc-Cc-CCCCCEECcCCcCcC
Confidence            34555555556777 46799998888888886431 11 123469999997554

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.80  E-value=0.61  Score=27.34  Aligned_cols=49  Identities=20%  Similarity=0.470  Sum_probs=34.1

Q ss_pred             CCchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhhhhhh
Q psy15639         11 GNCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICRRKLQ   65 (135)
Q Consensus        11 g~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCRRK~~   65 (135)
                      ..|.||..   .++ .-.|..|..-..-+|.-......  ....|.|..|+-+..
T Consensus        10 ~~C~~C~~---~g~-lv~Cd~C~~~~H~~C~~~~~~~~--~~~~W~C~~C~~~~~   58 (61)
T d1mm2a_          10 EFCRVCKD---GGE-LLCCDTCPSSYHIHCLNPPLPEI--PNGEWLCPRCTCPAL   58 (61)
T ss_dssp             SSCTTTCC---CSS-CBCCSSSCCCBCSSSSSSCCSSC--CSSCCCCTTTTTTCC
T ss_pred             CCCcCCCC---CCe-EEEeCCCCccCchhhcCCCcCcC--CCCcEECCCCcCccc
Confidence            46888874   454 67899999988889975433222  235799999976543

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.44  E-value=0.32  Score=27.47  Aligned_cols=47  Identities=26%  Similarity=0.690  Sum_probs=28.5

Q ss_pred             CchhhccccCCCCccchhhhhhhhhhcccccccCCCCCCCCCceeehhhh
Q psy15639         12 NCRVCLKSFKPDDYSRVCYECHQKVCEDCASYSKLDENQDENTWRCSICR   61 (135)
Q Consensus        12 ~CRVClKsfkP~e~~~tC~eCqqkVCEDCASYSkl~~~ed~~~WrCSvCR   61 (135)
                      .|.||.+.-.++++ -.|..|....=-.|.-.....  .....|.|..|+
T Consensus         2 ~C~vC~~~~~~~~~-i~Cd~C~~~~H~~C~~p~~~~--~p~~~W~C~~C~   48 (51)
T d1f62a_           2 RCKVCRKKGEDDKL-ILCDECNKAFHLFCLRPALYE--VPDGEWQCPACQ   48 (51)
T ss_dssp             CCTTTCCSSCCSCC-EECTTTCCEECHHHHCTTCCS--CCSSCCSCTTTS
T ss_pred             CCcCcCCCCCCCCE-EEcCCCCCCCCCCCCCCCCCc--CCCCCEECcCCc
Confidence            48999988766654 467777654433444332111  112469999996