Psyllid ID: psy15650

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
TTRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATPFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGDLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILSERTAVRQAKFHAVDSGSGGWWFESKSSSERTAVRQAKFQ
Secondary Structure (PSIPRED)
ccccccccccEEEcccccEEEcccccccccEEEEEEEEcccccEEEccccccEEEEEcccccHHHHHHHHHcccccccccccccccccccccccccccccccEEEcccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccEEEEEEEccccccccccEEEcccccEEEEEEcccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEccccccccccccEccEEEEEEEEEcccccEEEccHHcccEEEEEcccHHHHHHHHHccccccccccccccHHHccccccHHHHHHHHHHHHHcccccccHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHcccEEEEEEccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
TTRGGNKKYRALRIDqgnfswgsecctrkTRIIDVVYNASNNELVRTKTLVKNAIVVidatpfrqwyetyyalpigrrktgkldvqqltpsldpeeytlYVPVVVTRSTELSVLTRAishgdlntEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILSERTAVRQAKFhavdsgsggwwfeskssseRTAVRQAKFQ
Flexible Loop (DISEMBL)
ttrggnkkyralridqgnfswgsecctRKTRIIDVVYnasnnelvrtktlvknaivvidatpfrqwYETYYALpigrrktgKLDVQQLtpsldpeeytlYVPVVVTRSTELSVLTraishgdlnteaeeavlnkkrskkVVKKyksrqkhakveqaieeqfqtGRILVSILSERTAVRQAKFhavdsgsggwwfesksssertavrqakfq
Low Complexity Region (SEG)
TTRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATPFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGDLNTEAEEAVLNkkrskkvvkkyksrqkHAKVEQAIEEQFQTGRILVSILSERTAVRQAKFHAVDSGSGGWWFESKSSSERTAVRQAKFQ
Disordered region (IsUnstruct)
********YRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATPFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG************************************EEQFQTGRILVSILSERTAVRQAKFHAVDSGSGGWWF*****************
Disordered Region (DISOPRED)
*TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATPFRQWYETYYALPIG***********************************************************************************QFQTGRILVSILSERTAVRQAKFHAVDSGSGGWWF**********V******
Disordered Region (DISEMBL)
********YRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATPFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGDLNTEAEEAVLN********************EQAIEEQFQTGRILVSILSERTAVRQAKFHAVDSGSGGWWFE****************
Disordered Region (DISPRO)
****GNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATPFRQWYETYYALPI*****************************************************EAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILSERTAVRQAKFHAVDSGSGGWWFESKSSSERTAVR*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TTRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATPFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGDLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILSERTAVRQAKFHAVDSGSGGWWFESKSSSERTAVRQAKFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
O76756	208	40S ribosomal protein S8	yes	N/A	0.616	0.625	0.608	8e-50
Q8WQI5	208	40S ribosomal protein S8	N/A	N/A	0.616	0.625	0.567	2e-48
P62243	208	40S ribosomal protein S8	yes	N/A	0.611	0.620	0.564	3e-42
P62242	208	40S ribosomal protein S8	no	N/A	0.611	0.620	0.564	3e-42
Q4R6P8	208	40S ribosomal protein S8	N/A	N/A	0.611	0.620	0.564	3e-42
P62241	208	40S ribosomal protein S8	yes	N/A	0.611	0.620	0.564	3e-42
Q5E958	208	40S ribosomal protein S8	yes	N/A	0.611	0.620	0.564	3e-42
Q7SYU0	208	40S ribosomal protein S8	N/A	N/A	0.611	0.620	0.552	1e-41
Q8MLY8	208	40S ribosomal protein S8	yes	N/A	0.625	0.634	0.532	2e-41
P48156	208	40S ribosomal protein S8	yes	N/A	0.654	0.663	0.491	1e-40

>sp|O76756|RS8_APIME 40S ribosomal protein S8 OS=Apis mellifera GN=RpS8 PE=2 SV=2

 Score =  196 bits (499), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 104/171 (60%), Positives = 113/171 (66%), Gaps = 41/171 (23%)

Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
           TRGGNKKYRALR+D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKNAIV IDAT
Sbjct: 48  TRGGNKKYRALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDAT 107

Query: 62  PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
           PFRQWYE +Y LP+GR++  KL                                      
Sbjct: 108 PFRQWYEGHYVLPLGRKRGAKL-------------------------------------- 129

Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
              TEAEE VLNKKRSKK   KYK+RQ+ AKVE A+EEQF TGR+L  I S
Sbjct: 130 ---TEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISS 177

Apis mellifera (taxid: 7460)

>sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8 OS=Spodoptera frugiperda GN=RpS8 PE=2 SV=1

 Score =  191 bits (486), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/171 (56%), Positives = 115/171 (67%), Gaps = 41/171 (23%)

Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
           +RGGN KYRALR+D GNFSWGSEC TRK+RIIDVVYNASNNELVRTKTLVKNAIVV+DAT
Sbjct: 48  SRGGNTKYRALRLDTGNFSWGSECSTRKSRIIDVVYNASNNELVRTKTLVKNAIVVVDAT 107

Query: 62  PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
           PFRQWYE++Y LP+GR+K  KL                                      
Sbjct: 108 PFRQWYESHYLLPLGRKKGAKL-------------------------------------- 129

Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
              TEAE+A++NKKRS+K  KKY +RQ+ +KVE A+EEQF TGR+L  + S
Sbjct: 130 ---TEAEDAIINKKRSQKTAKKYLARQRLSKVESALEEQFHTGRLLACVAS 177

Spodoptera frugiperda (taxid: 7108)

>sp|P62243|RS8_RAT 40S ribosomal protein S8 OS=Rattus norvegicus GN=Rps8 PE=1 SV=2

 Score =  171 bits (434), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 96/170 (56%), Positives = 112/170 (65%), Gaps = 41/170 (24%)

Query: 3   RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
           RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN IV+ID+TP
Sbjct: 49  RGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTP 108

Query: 63  FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
           +RQWYE++YALP+GR+K  KL                                       
Sbjct: 109 YRQWYESHYALPLGRKKGAKL--------------------------------------- 129

Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
             T  EE +LNKKRSKK+ KKY  R+K+AK+   +EEQFQ G++L  I S
Sbjct: 130 --TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIAS 177

Rattus norvegicus (taxid: 10116)

>sp|P62242|RS8_MOUSE 40S ribosomal protein S8 OS=Mus musculus GN=Rps8 PE=1 SV=2

 Score =  171 bits (434), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 96/170 (56%), Positives = 112/170 (65%), Gaps = 41/170 (24%)

Query: 3   RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
           RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN IV+ID+TP
Sbjct: 49  RGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTP 108

Query: 63  FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
           +RQWYE++YALP+GR+K  KL                                       
Sbjct: 109 YRQWYESHYALPLGRKKGAKL--------------------------------------- 129

Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
             T  EE +LNKKRSKK+ KKY  R+K+AK+   +EEQFQ G++L  I S
Sbjct: 130 --TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIAS 177

Mus musculus (taxid: 10090)

>sp|Q4R6P8|RS8_MACFA 40S ribosomal protein S8 OS=Macaca fascicularis GN=RPS8 PE=2 SV=3

 Score =  171 bits (434), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 96/170 (56%), Positives = 112/170 (65%), Gaps = 41/170 (24%)

Query: 3   RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
           RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN IV+ID+TP
Sbjct: 49  RGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTP 108

Query: 63  FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
           +RQWYE++YALP+GR+K  KL                                       
Sbjct: 109 YRQWYESHYALPLGRKKGAKL--------------------------------------- 129

Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
             T  EE +LNKKRSKK+ KKY  R+K+AK+   +EEQFQ G++L  I S
Sbjct: 130 --TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIAS 177

Macaca fascicularis (taxid: 9541)

>sp|P62241|RS8_HUMAN 40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2

 Score =  171 bits (434), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 96/170 (56%), Positives = 112/170 (65%), Gaps = 41/170 (24%)

Query: 3   RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
           RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN IV+ID+TP
Sbjct: 49  RGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTP 108

Query: 63  FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
           +RQWYE++YALP+GR+K  KL                                       
Sbjct: 109 YRQWYESHYALPLGRKKGAKL--------------------------------------- 129

Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
             T  EE +LNKKRSKK+ KKY  R+K+AK+   +EEQFQ G++L  I S
Sbjct: 130 --TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIAS 177

Homo sapiens (taxid: 9606)

>sp|Q5E958|RS8_BOVIN 40S ribosomal protein S8 OS=Bos taurus GN=RPS8 PE=2 SV=3

 Score =  171 bits (434), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 96/170 (56%), Positives = 112/170 (65%), Gaps = 41/170 (24%)

Query: 3   RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
           RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN IV+ID+TP
Sbjct: 49  RGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTP 108

Query: 63  FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
           +RQWYE++YALP+GR+K  KL                                       
Sbjct: 109 YRQWYESHYALPLGRKKGAKL--------------------------------------- 129

Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
             T  EE +LNKKRSKK+ KKY  R+K+AK+   +EEQFQ G++L  I S
Sbjct: 130 --TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIAS 177

Bos taurus (taxid: 9913)

>sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8 OS=Xenopus laevis GN=rps8 PE=2 SV=3

 Score =  169 bits (429), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 110/170 (64%), Gaps = 41/170 (24%)

Query: 3   RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
           RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN I+++D+TP
Sbjct: 49  RGGNKKYRALRLDAGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCILLVDSTP 108

Query: 63  FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
           FRQW+E +YALP+GR+K  KL                                       
Sbjct: 109 FRQWFEAHYALPLGRKKGAKL--------------------------------------- 129

Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
             T  EE +LNKKRSKK  KKY+ R+K AK+   +EEQFQ G++L  I S
Sbjct: 130 --TPEEEEILNKKRSKKTQKKYEERKKTAKISPLLEEQFQQGKLLACIAS 177

Xenopus laevis (taxid: 8355)

>sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8 OS=Drosophila melanogaster GN=RpS8 PE=1 SV=1

 Score =  169 bits (427), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/171 (53%), Positives = 105/171 (61%), Gaps = 39/171 (22%)

Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
           TRGGN K RALR++ GNF+W SE   RKTRI DVVYNASNNELVRTKTLVKN+IVVIDAT
Sbjct: 48  TRGGNTKLRALRLETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDAT 107

Query: 62  PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
           PFRQWYE +Y LP+GR++  K                                       
Sbjct: 108 PFRQWYEAHYVLPLGRKRNPK--------------------------------------- 128

Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
               E E  VL KKRS+KV+KKY  RQK+ KVEQA+E+QF +GRIL  I S
Sbjct: 129 HAQKEDENDVLTKKRSEKVMKKYLERQKYGKVEQALEDQFTSGRILACISS 179

Drosophila melanogaster (taxid: 7227)

>sp|P48156|RS8_CAEEL 40S ribosomal protein S8 OS=Caenorhabditis elegans GN=rps-8 PE=3 SV=1

 Score =  166 bits (419), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/179 (49%), Positives = 105/179 (58%), Gaps = 41/179 (22%)

Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
           TRGGN+KYRALR+D GNFSW SE  TRKTRI+D +YNA+NNELVRTKTLVK AI+ +DA 
Sbjct: 48  TRGGNEKYRALRLDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAA 107

Query: 62  PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
           PFRQWYE +YALP+ R+K  KL                                      
Sbjct: 108 PFRQWYEAHYALPLARKKNAKL-------------------------------------- 129

Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILSERTAVRQA 180
              +E + A+LNKKRS   +KKY  RQK A V+  + EQF TGR+L  I S    V QA
Sbjct: 130 ---SEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPGQVGQA 185

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
149689088	208	40S ribosomal protein S8 [Triatoma infes	0.616	0.625	0.625	3e-50
121544003	208	putative ribosomal protein S8e [Maconell	0.616	0.625	0.619	3e-49
263173260	179	ribosomal protein S8e [Cimex lectularius	0.616	0.726	0.619	4e-49
383847735	208	PREDICTED: 40S ribosomal protein S8-like	0.616	0.625	0.614	4e-49
383864185	208	PREDICTED: 40S ribosomal protein S8-like	0.616	0.625	0.614	5e-49
307203914	202	40S ribosomal protein S8 [Harpegnathos s	0.616	0.643	0.608	7e-49
332022267	208	40S ribosomal protein S8 [Acromyrmex ech	0.616	0.625	0.608	2e-48
340717891	208	PREDICTED: 40S ribosomal protein S8-like	0.616	0.625	0.608	3e-48
307177476	208	40S ribosomal protein S8 [Camponotus flo	0.616	0.625	0.608	3e-48
74271822	208	40S ribosomal protein S8 [Apis mellifera	0.616	0.625	0.608	4e-48

>gi|149689088|gb|ABR27879.1| 40S ribosomal protein S8 [Triatoma infestans]

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 107/171 (62%), Positives = 115/171 (67%), Gaps = 41/171 (23%)

Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
           TRGGN K+RALR+D GNFSWGSECCTRKTR+IDVVYNASNNELVRTKTLVKNAIVVID T
Sbjct: 48  TRGGNAKFRALRLDHGNFSWGSECCTRKTRLIDVVYNASNNELVRTKTLVKNAIVVIDGT 107

Query: 62  PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
           PFRQWYE +YALP+GR+K  KL                                      
Sbjct: 108 PFRQWYEAHYALPLGRKKNAKL-------------------------------------- 129

Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
              TEAEEAVL KKRSKKV  KYK RQ+ AKVE A+EEQFQTGRIL  I S
Sbjct: 130 ---TEAEEAVLYKKRSKKVENKYKIRQRLAKVESALEEQFQTGRILACIAS 177

Source: Triatoma infestans

Species: Triatoma infestans

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|121544003|gb|ABM55665.1| putative ribosomal protein S8e [Maconellicoccus hirsutus]

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 106/171 (61%), Positives = 116/171 (67%), Gaps = 41/171 (23%)

Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
           TRGGNKK+RALR+DQGNF+WGSE   RKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT
Sbjct: 48  TRGGNKKFRALRLDQGNFAWGSEGIARKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 107

Query: 62  PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
           PFRQW+E+YYALPIGR+K+ KL                                      
Sbjct: 108 PFRQWFESYYALPIGRKKSAKL-------------------------------------- 129

Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
              TEAEEAVLNKKRSKK  +KYK RQK AKVE AIEE+F T R+L  I S
Sbjct: 130 ---TEAEEAVLNKKRSKKAEQKYKKRQKFAKVESAIEEEFHTSRLLACIAS 177

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|263173260|gb|ACY69893.1| ribosomal protein S8e [Cimex lectularius]

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 106/171 (61%), Positives = 115/171 (67%), Gaps = 41/171 (23%)

Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
           TRGGN KYRALR+D GNFSWGSE CTRKTR++DVVYNASNNELVRTKTLVKNAIVVIDAT
Sbjct: 19  TRGGNTKYRALRLDHGNFSWGSEGCTRKTRVMDVVYNASNNELVRTKTLVKNAIVVIDAT 78

Query: 62  PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
           PFRQWYE +YALP+GR+K  KL                                      
Sbjct: 79  PFRQWYEAHYALPLGRKKNAKL-------------------------------------- 100

Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
              TEAEEAVL KKRSKKV  KYK+RQK AKVE A+EEQFQT R+L  I S
Sbjct: 101 ---TEAEEAVLYKKRSKKVALKYKTRQKLAKVEPALEEQFQTARVLACISS 148

Source: Cimex lectularius

Species: Cimex lectularius

Genus: Cimex

Family: Cimicidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847735|ref|XP_003699508.1| PREDICTED: 40S ribosomal protein S8-like [Megachile rotundata]

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 105/171 (61%), Positives = 115/171 (67%), Gaps = 41/171 (23%)

Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
           TRGGNKKYRALR+D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKNAIV IDAT
Sbjct: 48  TRGGNKKYRALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDAT 107

Query: 62  PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
           PFRQWYE++Y LP+GR++  KL                                      
Sbjct: 108 PFRQWYESHYVLPLGRKRGAKL-------------------------------------- 129

Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
              TEAEE VLNKKRSKKV  KYK+RQ+ AKVE A+EEQF TGR+L  I S
Sbjct: 130 ---TEAEEEVLNKKRSKKVESKYKARQRFAKVEPALEEQFATGRVLACIAS 177

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864185|ref|XP_003707560.1| PREDICTED: 40S ribosomal protein S8-like [Megachile rotundata]

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 105/171 (61%), Positives = 115/171 (67%), Gaps = 41/171 (23%)

Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
           TRGGNKKYRALR+D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKNAIV IDAT
Sbjct: 48  TRGGNKKYRALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDAT 107

Query: 62  PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
           PFRQWYE++Y LP+GR++  KL                                      
Sbjct: 108 PFRQWYESHYVLPLGRKRGAKL-------------------------------------- 129

Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
              TEAEE VLNKKRSKKV  KYK+RQ+ AKVE A+EEQF TGR+L  I S
Sbjct: 130 ---TEAEEEVLNKKRSKKVEAKYKARQRFAKVEPALEEQFATGRVLACIAS 177

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203914|gb|EFN82821.1| 40S ribosomal protein S8 [Harpegnathos saltator]

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 104/171 (60%), Positives = 114/171 (66%), Gaps = 41/171 (23%)

Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
           TRGGNKKYRALR+D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKNAIV IDAT
Sbjct: 42  TRGGNKKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDAT 101

Query: 62  PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
           PFRQWYE++Y LP+GR++  KL                                      
Sbjct: 102 PFRQWYESHYVLPLGRKRGAKL-------------------------------------- 123

Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
              TEAEE VLNKKRSKK   KYK+RQ+ AKVE A+EEQF TGR+L  I S
Sbjct: 124 ---TEAEEEVLNKKRSKKAEAKYKARQRFAKVETALEEQFATGRVLACIAS 171

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022267|gb|EGI62582.1| 40S ribosomal protein S8 [Acromyrmex echinatior]

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 104/171 (60%), Positives = 113/171 (66%), Gaps = 41/171 (23%)

Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
           TRGGNKKYRALR+D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKNAIV IDAT
Sbjct: 48  TRGGNKKYRALRLDAGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDAT 107

Query: 62  PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
           PFRQWYE +Y LP+GR++  KL                                      
Sbjct: 108 PFRQWYEGHYVLPLGRKRGAKL-------------------------------------- 129

Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
              TEAEE VLNKKRSKK   KYK+RQ+ AKVE A+EEQF TGR+L  I S
Sbjct: 130 ---TEAEEEVLNKKRSKKAESKYKARQRFAKVEPALEEQFATGRVLACIAS 177

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717891|ref|XP_003397407.1| PREDICTED: 40S ribosomal protein S8-like [Bombus terrestris] gi|350400279|ref|XP_003485784.1| PREDICTED: 40S ribosomal protein S8-like [Bombus impatiens]

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 104/171 (60%), Positives = 113/171 (66%), Gaps = 41/171 (23%)

Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
           TRGGNKKYRALR+D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKNAIV IDAT
Sbjct: 48  TRGGNKKYRALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDAT 107

Query: 62  PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
           PFRQWYE +Y LP+GR++  KL                                      
Sbjct: 108 PFRQWYEAHYVLPLGRKRGAKL-------------------------------------- 129

Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
              TEAEE VLNKKRSKK   KYK+RQ+ AKVE A+EEQF TGR+L  I S
Sbjct: 130 ---TEAEEEVLNKKRSKKAESKYKARQRFAKVEPALEEQFATGRVLACISS 177

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177476|gb|EFN66603.1| 40S ribosomal protein S8 [Camponotus floridanus]

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 104/171 (60%), Positives = 113/171 (66%), Gaps = 41/171 (23%)

Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
           TRGGNKKYRALR+D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKNAIV IDAT
Sbjct: 48  TRGGNKKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDAT 107

Query: 62  PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
           PFRQWYE +Y LP+GR++  KL                                      
Sbjct: 108 PFRQWYEGHYVLPLGRKRGAKL-------------------------------------- 129

Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
              TEAEE VLNKKRSKK   KYK+RQ+ AKVE A+EEQF TGR+L  I S
Sbjct: 130 ---TEAEEEVLNKKRSKKAESKYKARQRFAKVEPALEEQFATGRVLACIAS 177

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|74271822|ref|NP_001011604.2| 40S ribosomal protein S8 [Apis mellifera] gi|116256285|sp|O76756.2|RS8_APIME RecName: Full=40S ribosomal protein S8 gi|74136913|gb|AAC28863.2| ribosomal protein S8 [Apis mellifera]

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 104/171 (60%), Positives = 113/171 (66%), Gaps = 41/171 (23%)

Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
           TRGGNKKYRALR+D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKNAIV IDAT
Sbjct: 48  TRGGNKKYRALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDAT 107

Query: 62  PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
           PFRQWYE +Y LP+GR++  KL                                      
Sbjct: 108 PFRQWYEGHYVLPLGRKRGAKL-------------------------------------- 129

Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
              TEAEE VLNKKRSKK   KYK+RQ+ AKVE A+EEQF TGR+L  I S
Sbjct: 130 ---TEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISS 177

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
UNIPROTKB|G8JKY0	207	RPS8 "40S ribosomal protein S8	0.402	0.410	0.811	5.2e-41
UNIPROTKB|Q5E958	208	RPS8 "40S ribosomal protein S8	0.402	0.408	0.811	5.2e-41
UNIPROTKB|E2RFR0	208	RPS8 "40S ribosomal protein S8	0.402	0.408	0.811	5.2e-41
UNIPROTKB|P62241	208	RPS8 "40S ribosomal protein S8	0.402	0.408	0.811	5.2e-41
UNIPROTKB|F2Z5F5	208	RPS8 "40S ribosomal protein S8	0.402	0.408	0.811	5.2e-41
UNIPROTKB|Q4R6P8	208	RPS8 "40S ribosomal protein S8	0.402	0.408	0.811	5.2e-41
RGD|61910	208	Rps8 "ribosomal protein S8" [R	0.402	0.408	0.811	5.2e-41
UNIPROTKB|F1NB02	189	RPS8 "40S ribosomal protein S8	0.402	0.449	0.8	1.1e-40
RGD|1359575	229	LOC297756 "ribosomal protein S	0.402	0.371	0.788	2.8e-40
ZFIN|ZDB-GENE-030131-8626	208	rps8a "ribosomal protein S8a"	0.402	0.408	0.788	1.2e-39

UNIPROTKB|G8JKY0 RPS8 "40S ribosomal protein S8" [Bos taurus (taxid:9913)]

 Score = 383 (139.9 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
 Identities = 69/85 (81%), Positives = 79/85 (92%)

Query:     3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
             RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN IV+ID+TP
Sbjct:    48 RGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTP 107

Query:    63 FRQWYETYYALPIGRRKTGKLDVQQ 87
             +RQWYE++YALP+GR+K  KL  ++
Sbjct:   108 YRQWYESHYALPLGRKKGAKLTPEE 132

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q5E958 RPS8 "40S ribosomal protein S8" [Bos taurus (taxid:9913)]

 Score = 383 (139.9 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
 Identities = 69/85 (81%), Positives = 79/85 (92%)

Query:     3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
             RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN IV+ID+TP
Sbjct:    49 RGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTP 108

Query:    63 FRQWYETYYALPIGRRKTGKLDVQQ 87
             +RQWYE++YALP+GR+K  KL  ++
Sbjct:   109 YRQWYESHYALPLGRKKGAKLTPEE 133

GO:0030529 "ribonucleoprotein complex" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

UNIPROTKB|E2RFR0 RPS8 "40S ribosomal protein S8" [Canis lupus familiaris (taxid:9615)]

 Score = 383 (139.9 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
 Identities = 69/85 (81%), Positives = 79/85 (92%)

Query:     3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
             RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN IV+ID+TP
Sbjct:    49 RGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTP 108

Query:    63 FRQWYETYYALPIGRRKTGKLDVQQ 87
             +RQWYE++YALP+GR+K  KL  ++
Sbjct:   109 YRQWYESHYALPLGRKKGAKLTPEE 133

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P62241 RPS8 "40S ribosomal protein S8" [Homo sapiens (taxid:9606)]

 Score = 383 (139.9 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
 Identities = 69/85 (81%), Positives = 79/85 (92%)

Query:     3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
             RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN IV+ID+TP
Sbjct:    49 RGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTP 108

Query:    63 FRQWYETYYALPIGRRKTGKLDVQQ 87
             +RQWYE++YALP+GR+K  KL  ++
Sbjct:   109 YRQWYESHYALPLGRKKGAKLTPEE 133

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA;TAS

GO:0006412 "translation" evidence=IC;NAS;TAS

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F2Z5F5 RPS8 "40S ribosomal protein S8" [Sus scrofa (taxid:9823)]

 Score = 383 (139.9 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
 Identities = 69/85 (81%), Positives = 79/85 (92%)

Query:     3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
             RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN IV+ID+TP
Sbjct:    49 RGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTP 108

Query:    63 FRQWYETYYALPIGRRKTGKLDVQQ 87
             +RQWYE++YALP+GR+K  KL  ++
Sbjct:   109 YRQWYESHYALPLGRKKGAKLTPEE 133

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q4R6P8 RPS8 "40S ribosomal protein S8" [Macaca fascicularis (taxid:9541)]

 Score = 383 (139.9 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
 Identities = 69/85 (81%), Positives = 79/85 (92%)

Query:     3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
             RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN IV+ID+TP
Sbjct:    49 RGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTP 108

Query:    63 FRQWYETYYALPIGRRKTGKLDVQQ 87
             +RQWYE++YALP+GR+K  KL  ++
Sbjct:   109 YRQWYESHYALPLGRKKGAKLTPEE 133

GO:0030529 "ribonucleoprotein complex" evidence=ISS

RGD|61910 Rps8 "ribosomal protein S8" [Rattus norvegicus (taxid:10116)]

 Score = 383 (139.9 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
 Identities = 69/85 (81%), Positives = 79/85 (92%)

Query:     3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
             RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN IV+ID+TP
Sbjct:    49 RGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTP 108

Query:    63 FRQWYETYYALPIGRRKTGKLDVQQ 87
             +RQWYE++YALP+GR+K  KL  ++
Sbjct:   109 YRQWYESHYALPLGRKKGAKLTPEE 133

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003674 "molecular_function" evidence=ND

GO:0003735 "structural constituent of ribosome" evidence=IBA

GO:0005737 "cytoplasm" evidence=ISO

GO:0006414 "translational elongation" evidence=IBA

GO:0008150 "biological_process" evidence=ND

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO;IDA

GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS

UNIPROTKB|F1NB02 RPS8 "40S ribosomal protein S8" [Gallus gallus (taxid:9031)]

 Score = 381 (139.2 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
 Identities = 68/85 (80%), Positives = 78/85 (91%)

Query:     3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
             RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP
Sbjct:    39 RGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLVDSTP 98

Query:    63 FRQWYETYYALPIGRRKTGKLDVQQ 87
             +RQWYE +YALP+GR+K  KL  ++
Sbjct:    99 YRQWYEAHYALPLGRKKGAKLTPEE 123

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

RGD|1359575 LOC297756 "ribosomal protein S8-like" [Rattus norvegicus (taxid:10116)]

 Score = 376 (137.4 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
 Identities = 67/85 (78%), Positives = 78/85 (91%)

Query:     3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
             RGGNKKYRALR+D GNFSWGSECCTRKTRI+DVVYNA NNELVRTKTLVKN IV+ID+TP
Sbjct:    48 RGGNKKYRALRLDVGNFSWGSECCTRKTRIVDVVYNAFNNELVRTKTLVKNCIVLIDSTP 107

Query:    63 FRQWYETYYALPIGRRKTGKLDVQQ 87
             +RQWYE++YALP+GR+K  KL  ++
Sbjct:   108 YRQWYESHYALPLGRKKGAKLTPEE 132

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IBA

GO:0006414 "translational elongation" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

ZFIN|ZDB-GENE-030131-8626 rps8a "ribosomal protein S8a" [Danio rerio (taxid:7955)]

 Score = 381 (139.2 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
 Identities = 67/85 (78%), Positives = 79/85 (92%)

Query:     3 RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
             RGGNKKYRALR+D GNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN +V++D+TP
Sbjct:    49 RGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSTP 108

Query:    63 FRQWYETYYALPIGRRKTGKLDVQQ 87
             +RQWYE++YALP+GR+K  KL  ++
Sbjct:   109 YRQWYESHYALPLGRKKGAKLTPEE 133

GO:0003735 "structural constituent of ribosome" evidence=IEA;IBA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006414 "translational elongation" evidence=IBA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

GO:0009790 "embryo development" evidence=IMP

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O76756	RS8_APIME	No assigned EC number	0.6081	0.6161	0.625	yes	N/A
Q4N3P0	RS8_THEPA	No assigned EC number	0.6973	0.3601	0.4042	yes	N/A
P25204	RS8_LEIMA	No assigned EC number	0.3801	0.6777	0.65	yes	N/A
P48156	RS8_CAEEL	No assigned EC number	0.4916	0.6540	0.6634	yes	N/A
P62241	RS8_HUMAN	No assigned EC number	0.5647	0.6113	0.6201	yes	N/A
P62243	RS8_RAT	No assigned EC number	0.5647	0.6113	0.6201	yes	N/A
P62247	RS8_DANRE	No assigned EC number	0.5470	0.6113	0.6201	yes	N/A
Q5E958	RS8_BOVIN	No assigned EC number	0.5647	0.6113	0.6201	yes	N/A
P49199	RS8_ORYSJ	No assigned EC number	0.4705	0.6445	0.6181	yes	N/A
Q8MLY8	RS8_DROME	No assigned EC number	0.5321	0.6255	0.6346	yes	N/A
Q54E24	RS8_DICDI	No assigned EC number	0.4058	0.6018	0.6018	yes	N/A
Q4UFS9	RS8_THEAN	No assigned EC number	0.6891	0.3507	0.4021	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	211
PTZ00148	205	PTZ00148, PTZ00148, 40S ribosomal protein S8; Prov	7e-56
cd11380	138	cd11380, Ribosomal_S8e_like, Eukaryotic/archaeal r	3e-31
pfam01201	129	pfam01201, Ribosomal_S8e, Ribosomal protein S8e	8e-29
cd11382	122	cd11382, Ribosomal_S8e, Eukaryotic/archaeal riboso	1e-28
COG2007	127	COG2007, RPS8A, Ribosomal protein S8E [Translation	5e-16
TIGR00307	127	TIGR00307, S8e, ribosomal protein S8	5e-15
PRK04049	127	PRK04049, PRK04049, 30S ribosomal protein S8e; Val	9e-07

>gnl|CDD|240292 PTZ00148, PTZ00148, 40S ribosomal protein S8; Provisional

 Score =  175 bits (447), Expect = 7e-56
 Identities = 76/170 (44%), Positives = 100/170 (58%), Gaps = 43/170 (25%)

Query: 3   RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
           RGGN K+RALR+D GNFSWGS+   +KTRI+DVVYNASNNELVRTKTLVKNAIV IDA P
Sbjct: 49  RGGNFKFRALRLDTGNFSWGSQGIAKKTRILDVVYNASNNELVRTKTLVKNAIVQIDAAP 108

Query: 63  FRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGD 122
           F+QWY  +Y + +G++K  K                                        
Sbjct: 109 FKQWYAKHYGIDLGKKKKYK---------------------------------------- 128

Query: 123 LNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
              + EE    KK+S+ +V K + R+K+ K+++A+ EQFQ+GR+L  I S
Sbjct: 129 ---KEEENKKAKKKSESLVAKLEVRKKNHKIDKALLEQFQSGRLLARISS 175

Length = 205

>gnl|CDD|211392 cd11380, Ribosomal_S8e_like, Eukaryotic/archaeal ribosomal protein S8e and similar proteins

 Score =  110 bits (278), Expect = 3e-31
 Identities = 28/68 (41%), Positives = 36/68 (52%)

Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
            RGGN K RALR+D+ N S      T+K +I+ V  N SNNE VR   + K  I+  D +
Sbjct: 45  VRGGNIKPRALRLDKANVSHPELGKTKKLKILGVKKNPSNNEYVRRGVITKGTIIETDVS 104

Query: 62  PFRQWYET 69
           P     E 
Sbjct: 105 PLGLVTEE 112

This family contains the eukaryotic/archaeal ribosomal protein S8, a component of the small ribosomal subunits, as well as the NSA2 gene product. Length = 138

>gnl|CDD|201659 pfam01201, Ribosomal_S8e, Ribosomal protein S8e

 Score =  104 bits (261), Expect = 8e-29
 Identities = 33/61 (54%), Positives = 41/61 (67%)

Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
            RGGN+K RALR+D+ N SW SE  TRK RI+ VVYN +NNE VR   + K AI+  D +
Sbjct: 48  VRGGNRKVRALRLDKANVSWPSEGTTRKVRILGVVYNPANNEYVRRNIITKGAIIETDVS 107

Query: 62  P 62
            
Sbjct: 108 E 108

Length = 129

>gnl|CDD|211394 cd11382, Ribosomal_S8e, Eukaryotic/archaeal ribosomal protein S8e (RPS8)

 Score =  103 bits (259), Expect = 1e-28
 Identities = 36/58 (62%), Positives = 42/58 (72%)

Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVID 59
            RGGN K RALR+D GN SW SE  T+K +I+DVVYN +NNELVR  TL K AI+  D
Sbjct: 44  VRGGNTKVRALRLDTGNVSWPSEGKTKKVKILDVVYNPANNELVRRNTLTKGAIIETD 101

The eukaryotic/archaeal ribosomal protein S8 is a component of the small (40S in eukaryotes, 30S in archaea) ribosomal subunits and interacts tightly with 18S rRNA (16S rRNA in archaea, presumably). Length = 122

>gnl|CDD|224918 COG2007, RPS8A, Ribosomal protein S8E [Translation, ribosomal structure and biogenesis]

 Score = 70.8 bits (174), Expect = 5e-16
 Identities = 26/60 (43%), Positives = 32/60 (53%)

Query: 1   TTRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDA 60
            TRGGN K RALR    N S      T+K +II VV N +N E VR   + K AI+  + 
Sbjct: 47  RTRGGNFKVRALRAKTANVSDPETGKTKKAKIIGVVENPANPEYVRRNIITKGAIIETEI 106

Length = 127

>gnl|CDD|129407 TIGR00307, S8e, ribosomal protein S8

 Score = 68.3 bits (167), Expect = 5e-15
 Identities = 26/60 (43%), Positives = 30/60 (50%)

Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
           TRGGNKK R LR +  N S       +K  I  VV N +NN  VR   + K AIV  D  
Sbjct: 47  TRGGNKKVRLLRDETANVSDPETGKVKKVEIAGVVENPANNHYVRRNVITKGAIVETDIG 106

e. Archaeal and eukaryotic ribosomal protein S8. This model could easily have been split into two models, one for eukaryotic S8 and one for archaeal S8; eukaryotic forms invariably have in insert of about 80 residues that archaeal forms of S8 do not [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 127

>gnl|CDD|235214 PRK04049, PRK04049, 30S ribosomal protein S8e; Validated

 Score = 46.0 bits (110), Expect = 9e-07
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIV 56
            RGGN+K R LR +  N +      T+K +I+ VV N +N    R   + K AI+
Sbjct: 47  VRGGNRKVRLLRANYANVADPKTGKTKKVKILTVVENPANPHYARRNIITKGAII 101

Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
PTZ00148	205	40S ribosomal protein S8; Provisional	100.0
KOG3283|consensus	200		100.0
PF01201	132	Ribosomal_S8e: Ribosomal protein S8e; InterPro: IP	100.0
TIGR00307	127	S8e ribosomal protein S8.e. Archaeal and eukaryoti	99.97
PRK04049	127	30S ribosomal protein S8e; Validated	99.97
COG2007	127	RPS8A Ribosomal protein S8E [Translation, ribosoma	99.95
PTZ00388	223	40S ribosomal protein S8-like; Provisional	99.63
KOG3163|consensus	260		96.01

>PTZ00148 40S ribosomal protein S8; Provisional

Probab=100.00  E-value=2.5e-69  Score=462.15  Aligned_cols=142  Identities=55%  Similarity=0.842  Sum_probs=135.5

Q ss_pred             cccCceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEccCccchhhhhhhcccccccccCC
Q psy15650          2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATPFRQWYETYYALPIGRRKTG   81 (211)
Q Consensus         2 vRGGN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD~tPFrqWye~hY~~~lg~kk~~   81 (211)
                      |||||.|+||||+|+|||+||++++++||+|++||||||||||||||||||||||+||++||||||++|||+|||+++..
T Consensus        48 ~RGGN~K~Ralr~~~gNv~~~se~~tkk~kIl~Vv~N~sNne~vRrniitKGAII~tda~Pfrqwy~~hy~~~lg~kk~~  127 (205)
T PTZ00148         48 CRGGNFKFRALRLDTGNFSWGSQGIAKKTRILDVVYNASNNELVRTKTLVKNAIVQIDAAPFKQWYAKHYGIDLGKKKKY  127 (205)
T ss_pred             ccCCceeeEEEeecceEEeecCCCeEEeeEEEEEEecCcCHHHHhhcceeeceEEeeccchHHHHHHHhhCccccccccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999854


Q ss_pred             cccccccCCCCCccccccccceeeeccchhhhhhhhhccCCCchHHHHHHHhhhcchHHHHHHHHHhhhccccHHHHHHH
Q psy15650         82 KLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGDLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQF  161 (211)
Q Consensus        82 k~~~~~~~~~~~~~~~~~~~~~v~~~~~e~~~~~~a~~~~~~~t~~e~~~~~kk~Sk~v~kK~~~R~k~~kvd~~leeQF  161 (211)
                      +                                          ++ |++.+++|+|+++++||+.|+++++||++|+|||
T Consensus       128 ~------------------------------------------~~-~~~~~~~k~s~~~~kk~~~r~~~~~~~~~leeqf  164 (205)
T PTZ00148        128 K------------------------------------------KE-EENKKAKKKSESLVAKLEVRKKNHKIDKALLEQF  164 (205)
T ss_pred             c------------------------------------------cc-hhhhhhhhhhHHHHHHHHHhhhhccccHHHHHHH
Confidence            3                                          12 4455789999999999999999999999999999


Q ss_pred             hcCceEEEEeecCCcccccceeeee
Q psy15650        162 QTGRILVSILSERTAVRQAKFHAVD  186 (211)
Q Consensus       162 ~~GRllA~IsSRPGQ~GradG~ile  186 (211)
                      ++|||||||+|||||||||||||||
T Consensus       165 ~~GrllA~IsSRPGQ~Gr~dGyILE  189 (205)
T PTZ00148        165 QSGRLLARISSRPGQSGRADGYILE  189 (205)
T ss_pred             hhCeEEEEEeCCCCCccceeEEEEe
Confidence            9999999999999999999999999

>KOG3283|consensus

Probab=100.00  E-value=5.4e-69  Score=454.70  Aligned_cols=136  Identities=62%  Similarity=0.955  Sum_probs=131.5

Q ss_pred             cccCceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEccCccchhhhhhhcccccccccCC
Q psy15650          2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATPFRQWYETYYALPIGRRKTG   81 (211)
Q Consensus         2 vRGGN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD~tPFrqWye~hY~~~lg~kk~~   81 (211)
                      |||||.||||||+|+|||+|+|||+++||||++||||||||||||||||||+|||+||++|||||||+|||+|||+||..
T Consensus        48 vRGGN~KyrALRlD~Gnfsw~Se~~trktri~dvvY~~snneLVRT~TL~k~aiV~ida~Pfrqwyeshy~~~lg~kk~~  127 (200)
T KOG3283|consen   48 VRGGNKKYRALRLDMGNFSWGSEGTTRKTRILDVVYHPSNNELVRTNTLTKSAIVQIDAAPFRQWYESHYGLPLGRKKNK  127 (200)
T ss_pred             ecCCchhhheeeeccCcccccccceeeeeeeeeeEecCCccceeeecchhhceEEEeccchHHHHHHHhhccccccccCc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999853


Q ss_pred             cccccccCCCCCccccccccceeeeccchhhhhhhhhccCCCchHHHHHHHhhhcchHHHHHHHHHhhhccccHHHHHHH
Q psy15650         82 KLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGDLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQF  161 (211)
Q Consensus        82 k~~~~~~~~~~~~~~~~~~~~~v~~~~~e~~~~~~a~~~~~~~t~~e~~~~~kk~Sk~v~kK~~~R~k~~kvd~~leeQF  161 (211)
                      .                                                 +++++|+++++||++|+++++||++|+|||
T Consensus       128 ~-------------------------------------------------~~~k~sk~~~rk~~~r~~~a~vds~l~eqF  158 (200)
T KOG3283|consen  128 I-------------------------------------------------LNKKKSKHVQRKYAERQKNAKVDSSLEEQF  158 (200)
T ss_pred             c-------------------------------------------------ccchhhHHHHHHHHHhhccccccHHHHHHH
Confidence            2                                                 468999999999999999999999999999


Q ss_pred             hcCceEEEEeecCCcccccceeeee
Q psy15650        162 QTGRILVSILSERTAVRQAKFHAVD  186 (211)
Q Consensus       162 ~~GRllA~IsSRPGQ~GradG~ile  186 (211)
                      ++|||||||+|||||||||||||||
T Consensus       159 ~~GrL~A~isSrpGQ~Gradgyile  183 (200)
T KOG3283|consen  159 AAGRLYACISSRPGQCGRADGYILE  183 (200)
T ss_pred             hcCcEEEEEeCCCCcccccceeeec
Confidence            9999999999999999999999987

>PF01201 Ribosomal_S8e: Ribosomal protein S8e; InterPro: IPR022309 A number of eukaryotic and archaeal ribosomal proteins have been grouped based on sequence similarities []

Probab=100.00  E-value=1.2e-33  Score=228.09  Aligned_cols=62  Identities=52%  Similarity=0.799  Sum_probs=57.2

Q ss_pred             cccCceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEccCccc
Q psy15650          2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATPF   63 (211)
Q Consensus         2 vRGGN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD~tPF   63 (211)
                      +||||.|+|+||+++|||+||++++++|++|++|+||||||+|||||||||||||+||++||
T Consensus        51 ~rGGn~K~r~lr~~~anv~~~~~~~t~k~~I~~V~~Npan~~~vR~~iitKGaII~~d~s~l  112 (132)
T PF01201_consen   51 VRGGNRKIRALRLDYANVSWPSEGKTKKVKIISVVYNPANNEYVRRNIITKGAIIETDVSEL  112 (132)
T ss_dssp             TSSS-EEEEECCESEEEEEETTTTEEEEEEEEEECSSSSTHHHHHTTBB-TT-EEEEESHTS
T ss_pred             ccCCcEeeeeeeecccEEEecccCceEEeeeEEEEEcCCChhhhhcCceecceEEEEeeccc
Confidence            69999999999999999999999999999999999999999999999999999999999744

One of these families, S8e, consists of a number of proteins with either about 220 amino acids (in eukaryotes) or about 125 amino acids (in archaea). This entry also contains proteins annotated as NSA2, which are though to be involved in ribosomal biogenesis of the 60S ribosomal subunit, having a role in the quality control of pre-60S particles. They are a component of the pre-66S ribosomal particle. ; PDB: 2KCY_A 2KCP_A 3U5G_I 3U5C_I 2KCO_A 2XZM_2 2XZN_2.

>TIGR00307 S8e ribosomal protein S8

Probab=99.97  E-value=1e-31  Score=216.67  Aligned_cols=59  Identities=44%  Similarity=0.503  Sum_probs=57.9

Q ss_pred             cccCceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEccC
Q psy15650          2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDA   60 (211)
Q Consensus         2 vRGGN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD~   60 (211)
                      +||||+|+||||+|+|||+||++++++|++|++|+||||||||||||||||||||+||+
T Consensus        47 ~rGGn~K~Ralr~~~~Nv~~~~~~~t~k~kIl~Vv~NpaN~~yvR~niitKGaIIetd~  105 (127)
T TIGR00307        47 TRGGNKKVRLLRDETANVSDPETGKVKKVEIAGVVENPANNHYVRRNVITKGAIVETDI  105 (127)
T ss_pred             cCCCceEEEEEEeeeeEEecccCCeEEEEEEEEEEECCCCHHHhhcCcEecceEEEEee
Confidence            79999999999999999999999999999999999999999999999999999999984

e. Archaeal and eukaryotic ribosomal protein S8. This model could easily have been split into two models, one for eukaryotic S8 and one for archaeal S8; eukaryotic forms invariably have in insert of about 80 residues that archaeal forms of S8 do not.

>PRK04049 30S ribosomal protein S8e; Validated

Probab=99.97  E-value=3.3e-31  Score=213.81  Aligned_cols=58  Identities=34%  Similarity=0.482  Sum_probs=57.2

Q ss_pred             cccCceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEcc
Q psy15650          2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVID   59 (211)
Q Consensus         2 vRGGN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD   59 (211)
                      +||||.|+||||+|+|||+||++++++|++|++|+||||||||||||||||||||+||
T Consensus        47 ~rGGn~K~R~lr~~~~Nv~~~~~~~tkk~kI~~Vv~N~aN~~yvRrniitKGaII~te  104 (127)
T PRK04049         47 VRGGNRKVRLLRANYANVADPKTGKTKKVKILTVVENPANPHYARRNIITKGAIIETE  104 (127)
T ss_pred             ccCCceEEEEEEecceEEeecccCeEEEEEEEEEEECCCCHHHhhcCCEecceEEEec
Confidence            7999999999999999999999999999999999999999999999999999999986

>COG2007 RPS8A Ribosomal protein S8E [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=1.6e-28  Score=198.46  Aligned_cols=59  Identities=44%  Similarity=0.527  Sum_probs=57.3

Q ss_pred             CcccCceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEcc
Q psy15650          1 TTRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVID   59 (211)
Q Consensus         1 ~vRGGN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD   59 (211)
                      .+||||+|+||+|++++||+||+++.+++++|++|+|||+|+||+|||||||||||+||
T Consensus        47 r~rGgn~K~r~~~~~~aNV~~p~~g~~~k~~Ii~V~~nPan~~y~rrniitKGaiI~t~  105 (127)
T COG2007          47 RTRGGNFKVRALRAKTANVSDPETGKTKKAKIIGVVENPANPEYVRRNIITKGAIIETE  105 (127)
T ss_pred             EeecCCeEEEEEEeccceecccccCcEEEEEEEEEEcCCCChHHhhccceecceEEEEe
Confidence            37999999999999999999999999999999999999999999999999999999986

>PTZ00388 40S ribosomal protein S8-like; Provisional

Probab=99.63  E-value=3.8e-16  Score=135.77  Aligned_cols=51  Identities=20%  Similarity=0.219  Sum_probs=49.3

Q ss_pred             EEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEccCc
Q psy15650         11 ALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT   61 (211)
Q Consensus        11 aLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD~t   61 (211)
                      .||++++||+||+.+.+.+++|++|++||+|++|+|+|+|||||||+|++.
T Consensus       138 glr~~~AnVt~p~~~~t~~~kIi~V~kNPan~~Ytr~nvITKGTIIEtnvs  188 (223)
T PTZ00388        138 GLRFKKAHVTHPELKTTFYLDIIGVKKNPQSNLYTSLGVITKGTIIEVNVS  188 (223)
T ss_pred             hhhcceeEEeccccCcEEEEEEEEEeeCCCChhhhhcCceeeeeEEEeehh
Confidence            589999999999999999999999999999999999999999999999875

>KOG3163|consensus

Probab=96.01  E-value=0.004  Score=55.76  Aligned_cols=53  Identities=17%  Similarity=0.198  Sum_probs=50.3

Q ss_pred             EEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEccCccc
Q psy15650         11 ALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATPF   63 (211)
Q Consensus        11 aLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD~tPF   63 (211)
                      +||...+||+-|.-++|-.-.|++|.-||+++-|---++||||+||+++..+.
T Consensus       175 ~lRfkkAhVthpEL~~Tf~LpIigvKKNP~sp~yT~LGvitkGTviEvnVseL  227 (260)
T KOG3163|consen  175 GLRFKKAHVTHPELKVTFCLPIIGVKKNPSSPMYTSLGVITKGTVIEVNVSEL  227 (260)
T ss_pred             hhhhhhccccChhhceEEEeeeeEeccCCCCcceeecceeecceEEEEecccc
Confidence            57888999999999999999999999999999999999999999999999765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	211
3u5c_I	200	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-28
2xzm_2	208	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-27
3zey_5	220	High-resolution Cryo-electron Microscopy Structure		1e-25

>pdb|3U5C|I Chain I, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 200

Iteration: 1
 Score =  119 bits (299), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 89/171 (52%), Gaps = 47/171 (27%)
Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
           TRGGNKKYRALRI+ GNFSW SE  ++KTRI  VVY+ SNNELVRT TL K AIV IDAT
Sbjct: 48  TRGGNKKYRALRIETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDAT 107
Query: 62  PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
           PFRQW+E +Y   +G++K  K            EE T    V  +++ E     RA S  
Sbjct: 108 PFRQWFEAHYGQTLGKKKNVK------------EEET----VAKSKNAERKWAARAAS-- 149
Query: 122 DLNTEAEEAVLNXXXXXXXXXXXXXXXXHAKVEQAIEEQFQTGRILVSILS 172
                                        AK+E ++E QF  GR+   I S
Sbjct: 150 -----------------------------AKIESSVESQFSAGRLYACISS 171

>pdb|2XZM|2 Chain 2, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 208

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 67/77 (87%)
Query: 3   RGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATP 62
           RGG+ K+RALR+ +GNFSWGSE  TRKT+I+DV YNA+NNELVRTKTLVKN+IV ID+TP
Sbjct: 57  RGGHLKFRALRLCEGNFSWGSENITRKTKILDVKYNATNNELVRTKTLVKNSIVEIDSTP 116
Query: 63  FRQWYETYYALPIGRRK 79
           FR+WY+ +Y + +G +K
Sbjct: 117 FREWYKLHYGIDLGLKK 133

>pdb|3ZEY|5 Chain 5, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 220

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 62/81 (76%)
Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
            RGGN K R LR+D GNF+WG+E   ++ RI+DVVYNA++NELVRTKTLVKN IVV+DA 
Sbjct: 48  ARGGNFKLRGLRLDTGNFAWGTEASAQRARILDVVYNATSNELVRTKTLVKNCIVVVDAA 107
Query: 62  PFRQWYETYYALPIGRRKTGK 82
           PFR WY  +Y + +G  K+ K
Sbjct: 108 PFRLWYAKHYGIDLGASKSKK 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
2xzm_2	208	40S ribosomal protein S8; ribosome, translation; 3	2e-36
3u5c_I	200	RP19, S14, YS9, 40S ribosomal protein S8-A; transl	3e-34
2kcp_A	98	30S ribosomal protein S8E; RPS8E, beta, NESG, ribo	6e-25
2kco_A	133	30S ribosomal protein S8E; ribosomal protein of un	7e-23

>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_2 Length = 208

 Score =  126 bits (316), Expect = 2e-36
 Identities = 70/171 (40%), Positives = 91/171 (53%), Gaps = 48/171 (28%)

Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
            RGG+ K+RALR+ +GNFSWGSE  TRKT+I+DV YNA+NNELVRTKTLVKN+IV ID+T
Sbjct: 56  VRGGHLKFRALRLCEGNFSWGSENITRKTKILDVKYNATNNELVRTKTLVKNSIVEIDST 115

Query: 62  PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
           PFR+WY+ +Y + +G +K                                          
Sbjct: 116 PFREWYKLHYGIDLGLKK------------------------------------------ 133

Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
                 +  VL  K   + V+K   R K   +E+ IEEQF + RIL  I S
Sbjct: 134 ------DRTVLGNKEKSRHVQKRVKRTKAQALEKNIEEQFVSQRILACITS 178

>3u5c_I RP19, S14, YS9, 40S ribosomal protein S8-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_I Length = 200

 Score =  119 bits (300), Expect = 3e-34
 Identities = 69/171 (40%), Positives = 87/171 (50%), Gaps = 47/171 (27%)

Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
           TRGGNKKYRALRI+ GNFSW SE  ++KTRI  VVY+ SNNELVRT TL K AIV IDAT
Sbjct: 48  TRGGNKKYRALRIETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDAT 107

Query: 62  PFRQWYETYYALPIGRRKTGKLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHG 121
           PFRQW+E +Y   +G++K  K +                                     
Sbjct: 108 PFRQWFEAHYGQTLGKKKNVKEEET----------------------------------- 132

Query: 122 DLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQFQTGRILVSILS 172
                         +SK   +K+ +R   AK+E ++E QF  GR+   I S
Sbjct: 133 ------------VAKSKNAERKWAARAASAKIESSVESQFSAGRLYACISS 171

>2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A Length = 98

 Score = 92.9 bits (231), Expect = 6e-25
 Identities = 18/63 (28%), Positives = 25/63 (39%)

Query: 2  TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
          TRGGN K R     + N             I +VV N +N   VR   + + A+V  +  
Sbjct: 10 TRGGNTKVRLASDTRINVVDPETGKVEIAEIRNVVENTANPHFVRRNIITRGAVVETNLG 69

Query: 62 PFR 64
            R
Sbjct: 70 NVR 72

>2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function, ribonucleoprotein, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus P2} Length = 133

 Score = 88.4 bits (219), Expect = 7e-23
 Identities = 15/63 (23%), Positives = 28/63 (44%)

Query: 2   TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDAT 61
           T GGN K R       N    +    +K +I++++   +N EL R   +++ A +  +A 
Sbjct: 48  TLGGNFKVRLKYTTTANVLDPATNTAKKVKILEILETPANKELARRGIIIRGAKIRTEAG 107

Query: 62  PFR 64
              
Sbjct: 108 LAV 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
3u5c_I	200	RP19, S14, YS9, 40S ribosomal protein S8-A; transl	100.0
2xzm_2	208	40S ribosomal protein S8; ribosome, translation; 3	100.0
2kcp_A	98	30S ribosomal protein S8E; RPS8E, beta, NESG, ribo	100.0
2kco_A	133	30S ribosomal protein S8E; ribosomal protein of un	100.0
3j20_J	127	30S ribosomal protein S8E; archaea, archaeal, KINK	99.95

>3u5c_I RP19, S14, YS9, 40S ribosomal protein S8-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_I

Probab=100.00  E-value=1.9e-70  Score=466.48  Aligned_cols=138  Identities=51%  Similarity=0.787  Sum_probs=125.8

Q ss_pred             cccCceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEccCccchhhhhhhcccccccccCC
Q psy15650          2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATPFRQWYETYYALPIGRRKTG   81 (211)
Q Consensus         2 vRGGN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD~tPFrqWye~hY~~~lg~kk~~   81 (211)
                      |||||.|+||||+|+|||+||++|+++|++|++||||||||||||||||||||||+||+||||||||+|||+|||+|+..
T Consensus        48 ~RGGN~K~Ralr~d~~N~s~~se~~tkK~kI~~Vv~N~sNne~vRrn~LtKGaII~tDatPfrqwy~~hy~~~lg~kk~~  127 (200)
T 3u5c_I           48 TRGGNKKYRALRIETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQTLGKKKNV  127 (200)
T ss_dssp             CSSSCEEEEESSBCEEEEEEGGGTEEEEEECCEEEECSSCHHHHHTTCBCTTCEEECCCHHHHHHHHHHSSCCSCCC---
T ss_pred             ccCCceeeeeEeeceeEEEeCCCCeEEEEeEEEEEEcCCChHhhhccceecceEEEccCchhhHHHHhhhCccccccccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999998753


Q ss_pred             cccccccCCCCCccccccccceeeeccchhhhhhhhhccCCCchHHHHHHHhhhcchHHHHHHHHHhhhccccHHHHHHH
Q psy15650         82 KLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGDLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQF  161 (211)
Q Consensus        82 k~~~~~~~~~~~~~~~~~~~~~v~~~~~e~~~~~~a~~~~~~~t~~e~~~~~kk~Sk~v~kK~~~R~k~~kvd~~leeQF  161 (211)
                      +                                            ++   +++++|+++++||++|+++++||++|+|||
T Consensus       128 ~--------------------------------------------~~---~~~k~s~~~~~k~~~r~~~~~i~~~leeqf  160 (200)
T 3u5c_I          128 K--------------------------------------------EE---ETVAKSKNAERKWAARAASAKIESSVESQF  160 (200)
T ss_dssp             -------------------------------------------------------CSHHHHHHHHSCSSCCCCHHHHHHH
T ss_pred             c--------------------------------------------hh---hhhhhhHHHHHHHHHHHhhCCcCHHHHHHH
Confidence            2                                            11   247899999999999999999999999999


Q ss_pred             hcCceEEEEeecCCcccccceeeee
Q psy15650        162 QTGRILVSILSERTAVRQAKFHAVD  186 (211)
Q Consensus       162 ~~GRllA~IsSRPGQ~GradG~ile  186 (211)
                      ++|||||||+|||||||||||||||
T Consensus       161 ~~GrllA~isSRPGQ~GradGyiLE  185 (200)
T 3u5c_I          161 SAGRLYACISSRPGQSGRCDGYILE  185 (200)
T ss_dssp             HTTCCEEEECSCHHHHSCCCEEECC
T ss_pred             hhCcEEEEEecCCCCccccceeEEc
Confidence            9999999999999999999999998

>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_2

Probab=100.00  E-value=4.5e-70  Score=466.19  Aligned_cols=137  Identities=52%  Similarity=0.794  Sum_probs=130.7

Q ss_pred             cccCceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEccCccchhhhhhhcccccccccCC
Q psy15650          2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDATPFRQWYETYYALPIGRRKTG   81 (211)
Q Consensus         2 vRGGN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD~tPFrqWye~hY~~~lg~kk~~   81 (211)
                      |||||.|+||||+|+|||+||++++++|++|++||||||||||||||||||||||+||+||||||||+|||+|||+|+..
T Consensus        56 vRGGN~K~Ralrl~~gNfsw~se~~trK~kIl~VvyN~sNnelvRtntLtKgAIV~tDa~Pfrqwye~hy~~~lg~kk~~  135 (208)
T 2xzm_2           56 VRGGHLKFRALRLCEGNFSWGSENITRKTKILDVKYNATNNELVRTKTLVKNSIVEIDSTPFREWYKLHYGIDLGLKKDR  135 (208)
T ss_dssp             CSSSCEEEEEEEESEEEEEETTTTEEEEEEEEEECCCSSCSHHHHTTCCCTTCEEEEESHHHHHHHHHHHSBCCSSGGGC
T ss_pred             ccCCceeeeeeecceeEEEecCCCeEEEEEEEEEEecCcchHHHhhcccccccEEEccCchhHHHHHHhcCccccccccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999842


Q ss_pred             cccccccCCCCCccccccccceeeeccchhhhhhhhhccCCCchHHHHHHHhhhcchHHHHHHHHHhhhccccHHHHHHH
Q psy15650         82 KLDVQQLTPSLDPEEYTLYVPVVVTRSTELSVLTRAISHGDLNTEAEEAVLNKKRSKKVVKKYKSRQKHAKVEQAIEEQF  161 (211)
Q Consensus        82 k~~~~~~~~~~~~~~~~~~~~~v~~~~~e~~~~~~a~~~~~~~t~~e~~~~~kk~Sk~v~kK~~~R~k~~kvd~~leeQF  161 (211)
                      .                                               +++++++|+++++|| +|++++++|++|+|||
T Consensus       136 ~-----------------------------------------------~~~~~k~s~~~~kk~-~r~~~~~~~~~l~eqf  167 (208)
T 2xzm_2          136 T-----------------------------------------------VLGNKEKSRHVQKRV-KRTKAQALEKNIEEQF  167 (208)
T ss_dssp             B-----------------------------------------------CCCSCCSSTTHHHHH-HHTTTCCCCHHHHHHH
T ss_pred             c-----------------------------------------------cccchhhhHHHHHHH-HHhhhccccHHHHHHH
Confidence            1                                               134689999999999 9999999999999999


Q ss_pred             hcCceEEEEeecCCcccccceeeee
Q psy15650        162 QTGRILVSILSERTAVRQAKFHAVD  186 (211)
Q Consensus       162 ~~GRllA~IsSRPGQ~GradG~ile  186 (211)
                      ++|||||||+|||||||||||||||
T Consensus       168 ~~GrllA~isSRPGQ~GradGyiLE  192 (208)
T 2xzm_2          168 VSQRILACITSRPGQSGRADGYILE  192 (208)
T ss_dssp             HHSEEEEEECSCHHHHSCCEEEECC
T ss_pred             hhCcEEEEEecCCCCcccccEEEEe
Confidence            9999999999999999999999986

>2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A

Probab=100.00  E-value=2e-37  Score=239.83  Aligned_cols=58  Identities=29%  Similarity=0.310  Sum_probs=57.4

Q ss_pred             cccCceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEcc
Q psy15650          2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVID   59 (211)
Q Consensus         2 vRGGN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD   59 (211)
                      +||||+|+||||+++|||+||++++++|++|++|+||||||+|||||||||||||+||
T Consensus        10 ~rGGN~K~Ralr~~~aNv~~~~~~~t~k~~Ii~Vv~NpsN~~yvR~n~ltKGaII~~d   67 (98)
T 2kcp_A           10 TRGGNTKVRLASDTRINVVDPETGKVEIAEIRNVVENTANPHFVRRNIITRGAVVETN   67 (98)
T ss_dssp             CCCCCCCCCTTSCCCEEEECTTTCCEEEECEEESSCSCSSCTTCCSSCCCTTCEEEES
T ss_pred             ccCCceEEEEEEeeeEEEEecccCeEEEEEEEEEEECCCChHHeecccEEeeeEEEec
Confidence            7999999999999999999999999999999999999999999999999999999998

>2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function, ribonucleoprotein, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus P2}

Probab=100.00  E-value=1.1e-34  Score=234.24  Aligned_cols=58  Identities=24%  Similarity=0.345  Sum_probs=57.5

Q ss_pred             cccCceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEcc
Q psy15650          2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVID   59 (211)
Q Consensus         2 vRGGN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD   59 (211)
                      +||||+|+||||+++|||+||++++++|++|++|+||||||||||||||||||||+||
T Consensus        48 ~rGGN~K~r~lr~~~~nv~~~~~~~t~k~~I~~Vv~Npsn~~yvR~n~itKGaII~~~  105 (133)
T 2kco_A           48 TLGGNFKVRLKYTTTANVLDPATNTAKKVKILEILETPANKELARRGIIIRGAKIRTE  105 (133)
T ss_dssp             TCCCCCCCCCCCCCEEEEEETTTTEEEEEEEEEECSCCTTHHHHTTTCCCTTCEEEES
T ss_pred             ccCCceeeeEeeeeeEEEEecccCeEEEEEEEEEEECCCChhheecccEeeeeEEEEe
Confidence            7999999999999999999999999999999999999999999999999999999999

>3j20_J 30S ribosomal protein S8E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.95  E-value=2.7e-29  Score=201.25  Aligned_cols=58  Identities=33%  Similarity=0.400  Sum_probs=56.2

Q ss_pred             cccCceeeEEEEeeeeeeeeCCcceEeeeEEeEEeecCCCchhhhhcccccceEEEccC
Q psy15650          2 TRGGNKKYRALRIDQGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNAIVVIDA   60 (211)
Q Consensus         2 vRGGN~K~RaLRld~gNfsw~se~~tkKtkIl~VVyNpSNnelVRtntLtKGAIV~tD~   60 (211)
                      +||||.|+||||+|+|||+| ++++++|++|++|+||||||||||||||||||||+||+
T Consensus        48 ~rGGN~K~ralr~~~aNvs~-s~~~t~k~~Ii~Vv~NpsN~~yvR~n~itKGaIIete~  105 (127)
T 3j20_J           48 TYGGNRKVRLTAAAYANVFD-KSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEI  105 (127)
T ss_dssp             CTTSCEEEEEEEESBCCCCC-SSCCCCCCBBCCCCCCSSCSHHHHHTCCCSSCEEEBSS
T ss_pred             ccCCceEEEEEEeccceEEe-ecCCEEEEEEEEEEECCCChhheEeccEecceEEEEcC
Confidence            79999999999999999999 99999999999999999999999999999999999654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00