Psyllid ID: psy15658

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MVETGVSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVKMGNKVLRALWASSGLYSTDDSAVITFGSMIKKRPFSVSSMKPLEKSST
Secondary Structure (PSIPRED)
ccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccccccccccEEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEHHHEcccccEccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccEEHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEEEccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHcHHHHHcccccccHHHHHHHHHHHHHcccccHccccccccccc
Coil and Loop (DISEMBL)
MVETGVSLFYTLsgqgeklsigwflqtttpYMWATLGIALSVALSVVGAALGIHTVGVSIigggvkapriktknLISVIFCEAVAIYGLITAIVLSGQleqynekstdqAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVKMGNKVLRALWASsglystddsavITFGsmikkrpfsvssmkpleksst
Flexible Loop (DISEMBL)
MVETGVSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSiigggvkapriktKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVKMGNKVLRALWASSGLYSTDDSAVITFGSMikkrpfsvssmkpleksst
Low Complexity Region (SEG)
MVETGVSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIalsvalsvvgaalgIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVKMGNKVLRALWASSGLYSTDDSAVITFGSMIKKRPFSVSSMKPLEKSST
Disordered region (IsUnstruct)
*****VSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVKMGNKVLRALWASSGLYSTDDSAVITFGSMI******************
Disordered Region (DISOPRED)
MVETGVSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVKMGNKVLRALWASSGLYSTDDSAVITFGSMIKKRPFSV****P******
Disordered Region (DISEMBL)
MVETGVSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVKMGNKVLRALWASSGLYSTDDSAVITFGSMIKKRPF*************
Disordered Region (DISPRO)
MVETGVSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVKMGNKVLRALWASSGLYSTDDSAVITFGSMIKK****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVETGVSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVKMGNKVLRALWASSGLYSTDDSAVITFGSMIKKRPFSVSSMKPLEKSST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	235	2.2.26 [Sep-21-2011]
Q2TA24	205	V-type proton ATPase 21 k	yes	N/A	0.778	0.892	0.650	6e-60
Q99437	205	V-type proton ATPase 21 k	yes	N/A	0.778	0.892	0.650	6e-60
Q91V37	205	V-type proton ATPase 21 k	yes	N/A	0.782	0.897	0.643	6e-60
O14046	199	Probable V-type proton AT	yes	N/A	0.753	0.889	0.533	1e-44
P23968	213	V-type proton ATPase subu	yes	N/A	0.676	0.746	0.574	6e-39
P59229	166	V-type proton ATPase 16 k	no	N/A	0.668	0.945	0.361	2e-17
Q40585	165	V-type proton ATPase 16 k	N/A	N/A	0.642	0.915	0.362	2e-17
P0DH94	164	V-type proton ATPase 16 k	no	N/A	0.642	0.920	0.362	2e-17
P0DH93	164	V-type proton ATPase 16 k	no	N/A	0.642	0.920	0.362	2e-17
P0DH92	164	V-type proton ATPase 16 k	no	N/A	0.642	0.920	0.362	2e-17

>sp|Q2TA24|VATO_BOVIN V-type proton ATPase 21 kDa proteolipid subunit OS=Bos taurus GN=ATP6V0B PE=2 SV=1

 Score =  230 bits (587), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 121/186 (65%), Positives = 148/186 (79%), Gaps = 3/186 (1%)

Query: 6   VSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGV 65
           V + YT+   G +  + WFL  T+P+MW+ LGI L+++LSVVGAA GI+  G SIIGGGV
Sbjct: 22  VGICYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGV 81

Query: 66  KAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTD-QAVISQNIFGGYLMFG 124
           KAPRIKTKNL+S+IFCEAVAIYG+I AIV+S   E ++  +TD +A+  +N   GY MFG
Sbjct: 82  KAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFS--ATDPKAIGHRNYHAGYSMFG 139

Query: 125 AGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTS 184
           AGL+VGL NLFCG+ VGIVGSGAALADA N +LFVKILIVEIFGSAIGLFG+IV I  TS
Sbjct: 140 AGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTS 199

Query: 185 KVKMGN 190
           +VKMG+
Sbjct: 200 RVKMGD 205

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Bos taurus (taxid: 9913)

>sp|Q99437|VATO_HUMAN V-type proton ATPase 21 kDa proteolipid subunit OS=Homo sapiens GN=ATP6V0B PE=2 SV=1

 Score =  230 bits (587), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 121/186 (65%), Positives = 148/186 (79%), Gaps = 3/186 (1%)

Query: 6   VSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGV 65
           V + YT+   G +  + WFL  T+P+MW+ LGI L+++LSVVGAA GI+  G SIIGGGV
Sbjct: 22  VGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGV 81

Query: 66  KAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTD-QAVISQNIFGGYLMFG 124
           KAPRIKTKNL+S+IFCEAVAIYG+I AIV+S   E ++  +TD +A+  +N   GY MFG
Sbjct: 82  KAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFS--ATDPKAIGHRNYHAGYSMFG 139

Query: 125 AGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTS 184
           AGL+VGL NLFCG+ VGIVGSGAALADA N +LFVKILIVEIFGSAIGLFG+IV I  TS
Sbjct: 140 AGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTS 199

Query: 185 KVKMGN 190
           +VKMG+
Sbjct: 200 RVKMGD 205

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Homo sapiens (taxid: 9606)

>sp|Q91V37|VATO_MOUSE V-type proton ATPase 21 kDa proteolipid subunit OS=Mus musculus GN=Atp6v0b PE=1 SV=1

 Score =  230 bits (587), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 119/185 (64%), Positives = 146/185 (78%), Gaps = 1/185 (0%)

Query: 6   VSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGV 65
           V + YT+   G +  + WFL  T+P+MW+ LGI L+++LSVVGAA GI+  G SIIGGGV
Sbjct: 22  VGICYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGV 81

Query: 66  KAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGA 125
           KAPRIKTKNL+S+IFCEAVAIYG+I AIV+S   E ++  +  +A+  +N   GY MFGA
Sbjct: 82  KAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFS-ATEPKAIGHRNYHAGYSMFGA 140

Query: 126 GLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSK 185
           GL+VGL NLFCG+ VGIVGSGAALADA N +LFVKILIVEIFGSAIGLFG+IV I  TS+
Sbjct: 141 GLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSR 200

Query: 186 VKMGN 190
           VKMG+
Sbjct: 201 VKMGD 205

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mus musculus (taxid: 10090)

>sp|O14046|VATO_SCHPO Probable V-type proton ATPase 20 kDa proteolipid subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vma16 PE=3 SV=1

 Score =  179 bits (455), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 96/180 (53%), Positives = 119/180 (66%), Gaps = 3/180 (1%)

Query: 6   VSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGV 65
           V L+      GE    G FL  T+PY W  LGIA  VA  ++GAA GI   G SI+GG V
Sbjct: 18  VGLYMLFHNSGESFDFGSFLLDTSPYTWGLLGIASCVAFGIIGAAWGIFICGTSILGGAV 77

Query: 66  KAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGA 125
           KAPRIKTKNLIS+IFCE VAIY LI AIV S ++   N           + + G+ +F  
Sbjct: 78  KAPRIKTKNLISIIFCEVVAIYSLIIAIVFSAKINDINPAGFYT---KSHYYTGFALFWG 134

Query: 126 GLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSK 185
           G++VGL NL CG+ VGI GS AALADA +++LFVK+L+VEIFGS +GLFGLIVG+ +  K
Sbjct: 135 GITVGLCNLICGVCVGITGSSAALADAQDASLFVKVLVVEIFGSVLGLFGLIVGLLIGGK 194

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P23968|VATO_YEAST V-type proton ATPase subunit c'' OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VMA16 PE=1 SV=1

 Score =  160 bits (405), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 93/162 (57%), Positives = 116/162 (71%), Gaps = 3/162 (1%)

Query: 8   LFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKA 67
           L+   +G G  ++ G FL  T+PYMWA LGIAL V LSVVGAA GI   G S+IG GV+A
Sbjct: 34  LYKLFTGHGSDINFGKFLLRTSPYMWANLGIALCVGLSVVGAAWGIFITGSSMIGAGVRA 93

Query: 68  PRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGL 127
           PRI TKNLIS+IFCE VAIYGLI AIV S +L      + +      N++ GY +F AG+
Sbjct: 94  PRITTKNLISIIFCEVVAIYGLIIAIVFSSKL---TVATAENMYSKSNLYTGYSLFWAGI 150

Query: 128 SVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGS 169
           +VG  NL CG+AVGI G+ AA++DAA+S LFVKIL++EIFGS
Sbjct: 151 TVGASNLICGIAVGITGATAAISDAADSALFVKILVIEIFGS 192

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P59229|VATL4_ARATH V-type proton ATPase 16 kDa proteolipid subunit c4 OS=Arabidopsis thaliana GN=VHA-C4 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 92/166 (55%), Gaps = 9/166 (5%)

Query: 20  SIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVI 79
           S G+    T P+ +  LG A ++  S +GAA G    GV +   GV  P +  K+++ V+
Sbjct: 3   SSGFSGDETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVV 61

Query: 80  FCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMA 139
               + IYGLI A+++S  +   N K+      S  +F GY    +GL+ GL  L  GMA
Sbjct: 62  MAGVLGIYGLIIAVIISTGI---NPKAK-----SYYLFDGYAHLSSGLACGLAGLSAGMA 113

Query: 140 VGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSK 185
           +GIVG     A+A    LFV ++++ IF  A+ L+GLIVGI ++S+
Sbjct: 114 IGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 159

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40585|VATL_TOBAC V-type proton ATPase 16 kDa proteolipid subunit OS=Nicotiana tabacum PE=2 SV=1

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 89/160 (55%), Gaps = 9/160 (5%)

Query: 26  QTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVA 85
             T P+ +  LG A ++  S +GAA G    GV +   GV  P +  K+++ V+    + 
Sbjct: 8   DETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 66

Query: 86  IYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGS 145
           IYGLI A+++S  +   N K+      S  +F GY    +GL+ GL  L  GMA+GIVG 
Sbjct: 67  IYGLIIAVIISTGI---NPKTK-----SYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGD 118

Query: 146 GAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSK 185
               A+A    LFV ++++ IF  A+ L+GLIVGI ++S+
Sbjct: 119 AGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 158

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Nicotiana tabacum (taxid: 4097)

>sp|P0DH94|VATL5_ARATH V-type proton ATPase 16 kDa proteolipid subunit c5 OS=Arabidopsis thaliana GN=VHA-C5 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 89/160 (55%), Gaps = 9/160 (5%)

Query: 26  QTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVA 85
             T P+ +  LG A ++  S +GAA G    GV +   GV  P +  K+++ V+    + 
Sbjct: 7   DETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 65

Query: 86  IYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGS 145
           IYGLI A+++S  +   N K+      S  +F GY    +GL+ GL  L  GMA+GIVG 
Sbjct: 66  IYGLIIAVIISTGI---NPKAK-----SYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGD 117

Query: 146 GAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSK 185
               A+A    LFV ++++ IF  A+ L+GLIVGI ++S+
Sbjct: 118 AGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 157

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DH93|VATL3_ARATH V-type proton ATPase 16 kDa proteolipid subunit c3 OS=Arabidopsis thaliana GN=VHA-C3 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 89/160 (55%), Gaps = 9/160 (5%)

Query: 26  QTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVA 85
             T P+ +  LG A ++  S +GAA G    GV +   GV  P +  K+++ V+    + 
Sbjct: 7   DETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 65

Query: 86  IYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGS 145
           IYGLI A+++S  +   N K+      S  +F GY    +GL+ GL  L  GMA+GIVG 
Sbjct: 66  IYGLIIAVIISTGI---NPKAK-----SYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGD 117

Query: 146 GAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSK 185
               A+A    LFV ++++ IF  A+ L+GLIVGI ++S+
Sbjct: 118 AGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 157

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DH92|VATL1_ARATH V-type proton ATPase 16 kDa proteolipid subunit c1 OS=Arabidopsis thaliana GN=VHA-C1 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 89/160 (55%), Gaps = 9/160 (5%)

Query: 26  QTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVA 85
             T P+ +  LG A ++  S +GAA G    GV +   GV  P +  K+++ V+    + 
Sbjct: 7   DETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 65

Query: 86  IYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGS 145
           IYGLI A+++S  +   N K+      S  +F GY    +GL+ GL  L  GMA+GIVG 
Sbjct: 66  IYGLIIAVIISTGI---NPKAK-----SYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGD 117

Query: 146 GAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSK 185
               A+A    LFV ++++ IF  A+ L+GLIVGI ++S+
Sbjct: 118 AGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 157

Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
121543963	209	putative vacuolar ATP synthase proteolip	0.812	0.913	0.828	2e-81
380028453	207	PREDICTED: V-type proton ATPase 21 kDa p	0.787	0.893	0.817	3e-78
48099854	207	PREDICTED: v-type proton ATPase 21 kDa p	0.787	0.893	0.817	5e-78
240848677	208	vacuolar ATP synthase 21 kDa proteolipid	0.782	0.884	0.8	5e-77
156544988	211	PREDICTED: V-type proton ATPase 21 kDa p	0.782	0.872	0.795	1e-76
350419077	206	PREDICTED: V-type proton ATPase 21 kDa p	0.787	0.898	0.783	6e-76
340708896	206	PREDICTED: v-type proton ATPase 21 kDa p	0.787	0.898	0.778	6e-75
340708898	204	PREDICTED: v-type proton ATPase 21 kDa p	0.787	0.906	0.778	1e-74
114051648	205	vacuolar ATP synthase 21 kDa proteolipid	0.787	0.902	0.816	7e-73
321461596	209	hypothetical protein DAPPUDRAFT_308098 [	0.774	0.870	0.747	7e-72

>gi|121543963|gb|ABM55646.1| putative vacuolar ATP synthase proteolipid subunit [Maconellicoccus hirsutus]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 159/192 (82%), Positives = 174/192 (90%), Gaps = 1/192 (0%)

Query: 2   VETGVSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSII 61
           V TGV LFY L+G+GEKLSIGWFL+ TTPYMWATLGIALSVA SVVGAA GI+T GVSII
Sbjct: 18  VSTGVILFYVLTGRGEKLSIGWFLENTTPYMWATLGIALSVAFSVVGAAAGIYTTGVSII 77

Query: 62  GGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNE-KSTDQAVISQNIFGGY 120
           GGGVK PRIKTKNLISVIFCEAVAIYGLI AIVLSGQL+ + + K T+ +V +QN   GY
Sbjct: 78  GGGVKTPRIKTKNLISVIFCEAVAIYGLILAIVLSGQLDPFTDNKLTEASVRNQNYLSGY 137

Query: 121 LMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGI 180
           LMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANS+LFVK+LIVEIFGSAIGLFGLIVGI
Sbjct: 138 LMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSSLFVKVLIVEIFGSAIGLFGLIVGI 197

Query: 181 YMTSKVKMGNKV 192
           YMTSK+KMG+K+
Sbjct: 198 YMTSKIKMGDKL 209

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028453|ref|XP_003697916.1| PREDICTED: V-type proton ATPase 21 kDa proteolipid subunit-like [Apis florea]

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 152/186 (81%), Positives = 167/186 (89%), Gaps = 1/186 (0%)

Query: 8   LFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKA 67
           L++  +G+GE++SI WFL+ T+PYMWATLGI L+VALSVVGAALGIHT GVSIIGGGVKA
Sbjct: 22  LYHVFTGKGERVSIAWFLENTSPYMWATLGIGLAVALSVVGAALGIHTTGVSIIGGGVKA 81

Query: 68  PRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYN-EKSTDQAVISQNIFGGYLMFGAG 126
           PRIKTKNLISVIFCEAVAIYGLITAIVLSG LE++  E    + V  QN F GYLMFGAG
Sbjct: 82  PRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKFTAEAIQKEEVRDQNWFAGYLMFGAG 141

Query: 127 LSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKV 186
           L+VGLVNLFCG+AVGIVGSGAAL+DAANS LFVKILIVEIFGSAIGLFGLIVGIYMTSKV
Sbjct: 142 LAVGLVNLFCGIAVGIVGSGAALSDAANSALFVKILIVEIFGSAIGLFGLIVGIYMTSKV 201

Query: 187 KMGNKV 192
           KMGNKV
Sbjct: 202 KMGNKV 207

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48099854|ref|XP_392599.1| PREDICTED: v-type proton ATPase 21 kDa proteolipid subunit-like [Apis mellifera]

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 152/186 (81%), Positives = 167/186 (89%), Gaps = 1/186 (0%)

Query: 8   LFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKA 67
           L++  +G+GE++SI WFL+ T+PYMWATLGI L+VALSVVGAALGIHT GVSIIGGGVKA
Sbjct: 22  LYHLFTGKGERVSIAWFLENTSPYMWATLGIGLAVALSVVGAALGIHTTGVSIIGGGVKA 81

Query: 68  PRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYN-EKSTDQAVISQNIFGGYLMFGAG 126
           PRIKTKNLISVIFCEAVAIYGLITAIVLSG LE++  E    + V  QN F GYLMFGAG
Sbjct: 82  PRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKFTAEAIQKEEVRDQNWFAGYLMFGAG 141

Query: 127 LSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKV 186
           L+VGLVNLFCG+AVGIVGSGAAL+DAANS LFVKILIVEIFGSAIGLFGLIVGIYMTSKV
Sbjct: 142 LAVGLVNLFCGIAVGIVGSGAALSDAANSALFVKILIVEIFGSAIGLFGLIVGIYMTSKV 201

Query: 187 KMGNKV 192
           KMGNKV
Sbjct: 202 KMGNKV 207

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240848677|ref|NP_001155679.1| vacuolar ATP synthase 21 kDa proteolipid subunit-like [Acyrthosiphon pisum] gi|239788169|dbj|BAH70776.1| ACYPI006833 [Acyrthosiphon pisum]

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 148/185 (80%), Positives = 167/185 (90%), Gaps = 1/185 (0%)

Query: 8   LFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKA 67
           LFY L+G+GE++SIGWFL  T+PYMWA LGI+L+VALSVVGAALGIHT GVSI+GGGVKA
Sbjct: 24  LFYLLAGKGEQISIGWFLANTSPYMWAVLGISLAVALSVVGAALGIHTTGVSIVGGGVKA 83

Query: 68  PRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEK-STDQAVISQNIFGGYLMFGAG 126
           PRIKTKNLISVIFCEAVAIYGLITAIV+SGQLE + +   T Q +  QN   GYL+F AG
Sbjct: 84  PRIKTKNLISVIFCEAVAIYGLITAIVMSGQLESFTDNVDTAQQIRDQNWMAGYLIFAAG 143

Query: 127 LSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKV 186
           +SVGLVNLFCG+AVG+VGSGAALADAANS+LFVKILIVEIFGSAIGLFGLIVGIY+TSKV
Sbjct: 144 ISVGLVNLFCGIAVGVVGSGAALADAANSSLFVKILIVEIFGSAIGLFGLIVGIYITSKV 203

Query: 187 KMGNK 191
           KMG+K
Sbjct: 204 KMGDK 208

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156544988|ref|XP_001608002.1| PREDICTED: V-type proton ATPase 21 kDa proteolipid subunit-like [Nasonia vitripennis]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 148/186 (79%), Positives = 166/186 (89%), Gaps = 2/186 (1%)

Query: 8   LFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKA 67
           L+Y  +G+GE++SIGWFL+  +PYMWATLGI L+VALSVVGAALGIHT GVSIIGGGVKA
Sbjct: 24  LYYMFTGKGEQVSIGWFLENASPYMWATLGIGLTVALSVVGAALGIHTTGVSIIGGGVKA 83

Query: 68  PRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQ--AVISQNIFGGYLMFGA 125
           PRIKTKNLISVIFCEAVAIYGLITAIVLSG LE ++E+  +   A+  QN   G+LMFGA
Sbjct: 84  PRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEAFSEEKLEANLALKGQNFMAGHLMFGA 143

Query: 126 GLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSK 185
           GL+VGLVNLFCG+AVGIVGSGAAL+DAANS LFVKILIVEIFGSAIGLFGLIVGIYMTSK
Sbjct: 144 GLAVGLVNLFCGIAVGIVGSGAALSDAANSALFVKILIVEIFGSAIGLFGLIVGIYMTSK 203

Query: 186 VKMGNK 191
           V+MGN 
Sbjct: 204 VRMGND 209

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419077|ref|XP_003492063.1| PREDICTED: V-type proton ATPase 21 kDa proteolipid subunit-like [Bombus impatiens]

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 145/185 (78%), Positives = 167/185 (90%)

Query: 8   LFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKA 67
           L++  +G+GE++S+ WFL+ T+P+MWATLGI L+VALSVVGAALGIHT GVSIIGGGVKA
Sbjct: 22  LYHVFTGKGERVSVAWFLENTSPHMWATLGIGLAVALSVVGAALGIHTTGVSIIGGGVKA 81

Query: 68  PRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGL 127
           PRIKTKNLISVIFCEAVAIYGLITAIVLSG L++++     + V +QN   GYL+FGAGL
Sbjct: 82  PRIKTKNLISVIFCEAVAIYGLITAIVLSGMLDEFSYPIQKEEVRNQNWLAGYLIFGAGL 141

Query: 128 SVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVK 187
           +VGLVNLFCG+AVGIVGSGAAL+DAANS LFVKILIVEIFGSAIGLFGLIVGIYMTSKVK
Sbjct: 142 AVGLVNLFCGIAVGIVGSGAALSDAANSALFVKILIVEIFGSAIGLFGLIVGIYMTSKVK 201

Query: 188 MGNKV 192
           MG+KV
Sbjct: 202 MGDKV 206

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708896|ref|XP_003393053.1| PREDICTED: v-type proton ATPase 21 kDa proteolipid subunit-like isoform 1 [Bombus terrestris]

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 144/185 (77%), Positives = 167/185 (90%)

Query: 8   LFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKA 67
           L++  +G+GE++S+ WFL+ T+P+MWATLGI L+VALSVVGAALGI+T GVSIIGGGVKA
Sbjct: 22  LYHVFTGKGERVSVAWFLENTSPHMWATLGIGLAVALSVVGAALGINTTGVSIIGGGVKA 81

Query: 68  PRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGL 127
           PRIKTKNLISVIFCEAVAIYGLITAIVLSG L++++     + V +QN   GYL+FGAGL
Sbjct: 82  PRIKTKNLISVIFCEAVAIYGLITAIVLSGMLDEFSYPIQKEEVRNQNWLAGYLIFGAGL 141

Query: 128 SVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVK 187
           +VGLVNLFCG+AVGIVGSGAAL+DAANS LFVKILIVEIFGSAIGLFGLIVGIYMTSKVK
Sbjct: 142 AVGLVNLFCGIAVGIVGSGAALSDAANSALFVKILIVEIFGSAIGLFGLIVGIYMTSKVK 201

Query: 188 MGNKV 192
           MG+KV
Sbjct: 202 MGDKV 206

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708898|ref|XP_003393054.1| PREDICTED: v-type proton ATPase 21 kDa proteolipid subunit-like isoform 2 [Bombus terrestris]

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 144/185 (77%), Positives = 167/185 (90%)

Query: 8   LFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKA 67
           L++  +G+GE++S+ WFL+ T+P+MWATLGI L+VALSVVGAALGI+T GVSIIGGGVKA
Sbjct: 20  LYHVFTGKGERVSVAWFLENTSPHMWATLGIGLAVALSVVGAALGINTTGVSIIGGGVKA 79

Query: 68  PRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGL 127
           PRIKTKNLISVIFCEAVAIYGLITAIVLSG L++++     + V +QN   GYL+FGAGL
Sbjct: 80  PRIKTKNLISVIFCEAVAIYGLITAIVLSGMLDEFSYPIQKEEVRNQNWLAGYLIFGAGL 139

Query: 128 SVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVK 187
           +VGLVNLFCG+AVGIVGSGAAL+DAANS LFVKILIVEIFGSAIGLFGLIVGIYMTSKVK
Sbjct: 140 AVGLVNLFCGIAVGIVGSGAALSDAANSALFVKILIVEIFGSAIGLFGLIVGIYMTSKVK 199

Query: 188 MGNKV 192
           MG+KV
Sbjct: 200 MGDKV 204

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114051648|ref|NP_001040169.1| vacuolar ATP synthase 21 kDa proteolipid subunit [Bombyx mori] gi|87248269|gb|ABD36187.1| vacuolar ATP synthase 21 kDa proteolipid subunit [Bombyx mori]

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 151/185 (81%), Positives = 169/185 (91%)

Query: 7   SLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVK 66
           SL+Y L+G+GE++S+GWFL+ T+PYMW TLGIA SVALSVVGAA+GIHT GVSI+GGGVK
Sbjct: 21  SLYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVK 80

Query: 67  APRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAG 126
           APRIKTKNLISVIFCEAVAIYGLITAIVLSG LE+Y+E  T  +V  QN   GY+MFGAG
Sbjct: 81  APRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAG 140

Query: 127 LSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKV 186
           L+VGLVNLFCG+AVGIVGSGAALADAAN+ LFVKILIVEIFGSAIGLFGLIVGIYMTSKV
Sbjct: 141 LAVGLVNLFCGIAVGIVGSGAALADAANAALFVKILIVEIFGSAIGLFGLIVGIYMTSKV 200

Query: 187 KMGNK 191
           KMGN+
Sbjct: 201 KMGNQ 205

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321461596|gb|EFX72626.1| hypothetical protein DAPPUDRAFT_308098 [Daphnia pulex]

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 136/182 (74%), Positives = 160/182 (87%)

Query: 9   FYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAP 68
           +Y L+GQGE++ IGWFL+T TPYMWAT GIA +V+LSV+GAALGI+T G SIIGGGVKAP
Sbjct: 27  YYILTGQGERIDIGWFLETITPYMWATTGIAFAVSLSVIGAALGIYTTGSSIIGGGVKAP 86

Query: 69  RIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLS 128
           RIKTKNLISVIFCEAVAIYGLI AIVL+G L++Y+        I+QN F G+ MFGAGL+
Sbjct: 87  RIKTKNLISVIFCEAVAIYGLIIAIVLAGMLDKYDPLKASPEKIAQNYFSGFAMFGAGLT 146

Query: 129 VGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVKM 188
           VGLVNLFCG++VGIVGSGAALADAAN +LFVKILIVEIFGSA+GLFGLIVGI M+S++KM
Sbjct: 147 VGLVNLFCGISVGIVGSGAALADAANPSLFVKILIVEIFGSAVGLFGLIVGILMSSRIKM 206

Query: 189 GN 190
           G+
Sbjct: 207 GD 208

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
FB|FBgn0028662	212	VhaPPA1-1 "Vacuolar H[+] ATPas	0.808	0.896	0.708	1.3e-66
WB|WBGene00006913	214	vha-4 [Caenorhabditis elegans	0.812	0.892	0.566	3.7e-55
FB|FBgn0262514	212	VhaPPA1-2 "Vacuolar H[+] ATPas	0.791	0.877	0.590	2.6e-54
ZFIN|ZDB-GENE-030131-443	206	atp6v0b "ATPase, H+ transporti	0.782	0.893	0.610	2.6e-54
UNIPROTKB|E1C5X9	205	ATP6V0B "Uncharacterized prote	0.787	0.902	0.596	8.9e-54
UNIPROTKB|E2RL73	205	ATP6V0B "Uncharacterized prote	0.778	0.892	0.607	1.9e-53
UNIPROTKB|Q2TA24	205	ATP6V0B "V-type proton ATPase	0.778	0.892	0.602	4.9e-53
RGD|1308303	205	Atp6v0b "ATPase, H+ transporti	0.778	0.892	0.602	4.9e-53
UNIPROTKB|Q99437	205	ATP6V0B "V-type proton ATPase	0.778	0.892	0.602	6.3e-53
MGI|MGI:1890510	205	Atp6v0b "ATPase, H+ transporti	0.782	0.897	0.594	1e-52

FB|FBgn0028662 VhaPPA1-1 "Vacuolar H[+] ATPase PPA1 subunit 1" [Drosophila melanogaster (taxid:7227)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 136/192 (70%), Positives = 158/192 (82%)

Query:     2 VETGVSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIXXXXXXXXXXXXXXIHTVGVSII 61
             V T ++L++ ++G+GE++S+GWFL ++ PYMWA LGI              IHT G SI+
Sbjct:    20 VATILTLYFVMTGKGERVSVGWFLASSNPYMWACLGIGLSVSLSVVGAALGIHTTGTSIV 79

Query:    62 GGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYN-EKSTDQAVISQ-NIFGG 119
             GGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQ++ E +  QA I   N F G
Sbjct:    80 GGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQFSMETALSQAAIQNTNWFSG 139

Query:   120 YLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVG 179
             YL+FGAGL+VGLVNLFCG+AVGIVGSGAAL+DAAN+ LFVKILIVEIFGSAIGLFGLIVG
Sbjct:   140 YLIFGAGLAVGLVNLFCGIAVGIVGSGAALSDAANAALFVKILIVEIFGSAIGLFGLIVG 199

Query:   180 IYMTSKVKMGNK 191
             IYMTSK KMG+K
Sbjct:   200 IYMTSKSKMGDK 211

GO:0000220 "vacuolar proton-transporting V-type ATPase, V0 domain" evidence=ISS

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=ISM;IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033181 "plasma membrane proton-transporting V-type ATPase complex" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

WB|WBGene00006913 vha-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 111/196 (56%), Positives = 142/196 (72%)

Query:     1 MVETGVSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIXXXXXXXXXXXXXXIHTVGVSI 60
             ++  G  LFY LSGQG +  IGWFL +T+P+MWA LGI              I T G SI
Sbjct:    19 LIILGTGLFYMLSGQGHRFDIGWFLTSTSPHMWAGLGIGFSLSLSVLGAGWGIFTTGSSI 78

Query:    61 IGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKS---TDQ--AVISQN 115
             +GGGVKAPRI+TKNL+S+IFCEAVAI+G+I A V  G+L ++  +    T+   A++++N
Sbjct:    79 LGGGVKAPRIRTKNLVSIIFCEAVAIFGIIMAFVFVGKLAEFRREDLPDTEDGMAILARN 138

Query:   116 IFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFG 175
             +  GY++FG GL+VGL NL CG+AVGIVGSGAA+ADAAN  LFVKILI+EIF SAIGLFG
Sbjct:   139 LASGYMIFGGGLTVGLSNLVCGLAVGIVGSGAAIADAANPALFVKILIIEIFASAIGLFG 198

Query:   176 LIVGIYMTSKVKMGNK 191
             +I+GI  T+K   GNK
Sbjct:   199 MIIGIVQTNKASFGNK 214

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0000220 "vacuolar proton-transporting V-type ATPase, V0 domain" evidence=ISS

FB|FBgn0262514 VhaPPA1-2 "Vacuolar H[+] ATPase PPA1 subunit 2" [Drosophila melanogaster (taxid:7227)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 111/188 (59%), Positives = 139/188 (73%)

Query:     5 GVSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIXXXXXXXXXXXXXXIHTVGVSIIGGG 64
             G+     +   GE++ +GWFL T+ P++W+ +GI              I+ +G S+ GGG
Sbjct:    25 GIIFANVMVNMGERMGLGWFLYTSNPFLWSGMGIFLACALSVLGAASGIYMIGCSVAGGG 84

Query:    65 VKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKS--TDQAVISQNIFGGYLM 122
             V++PRIKTKNLISVIFCEAVAIYGLITAI+LSG + +++     TD  V++ N+F G+  
Sbjct:    85 VRSPRIKTKNLISVIFCEAVAIYGLITAILLSGNVNKFSSVRLITDSTVMATNMFTGFAT 144

Query:   123 FGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYM 182
             FGAGL VG+VN+ CG+AVGIVGSGAALADAANS LFVKILIVEIFGSAIGLFGLIV IYM
Sbjct:   145 FGAGLCVGMVNVACGIAVGIVGSGAALADAANSALFVKILIVEIFGSAIGLFGLIVAIYM 204

Query:   183 TSKVKMGN 190
             TSK +  N
Sbjct:   205 TSKAETIN 212

GO:0005889 "hydrogen:potassium-exchanging ATPase complex" evidence=ISS

GO:0000220 "vacuolar proton-transporting V-type ATPase, V0 domain" evidence=ISS

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=ISM;IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

ZFIN|ZDB-GENE-030131-443 atp6v0b "ATPase, H+ transporting, V0 subunit B" [Danio rerio (taxid:7955)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 113/185 (61%), Positives = 135/185 (72%)

Query:     6 VSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIXXXXXXXXXXXXXXIHTVGVSIIGGGV 65
             V + YT+   G +  + WFL  T+P+MWA LGI              I+  G SIIGGGV
Sbjct:    23 VGICYTIFDLGFRFDVAWFLTETSPFMWANLGIGLAISLSVVGAAWGIYITGSSIIGGGV 82

Query:    66 KAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGA 125
             KAPRIKTKNL+S+IFCEAVAIYG+I AIV+S   E ++  +T + + S+N   GY MFGA
Sbjct:    83 KAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNLAENFSG-TTPETIGSKNYQAGYSMFGA 141

Query:   126 GLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSK 185
             GL+VG  NLFCG+ VGIVGSGAALADA N+NLFV+ILIVEIFGSAIGLFG+IV I  TSK
Sbjct:   142 GLTVGFSNLFCGICVGIVGSGAALADAQNANLFVRILIVEIFGSAIGLFGVIVAILQTSK 201

Query:   186 VKMGN 190
             VKMGN
Sbjct:   202 VKMGN 206

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0048066 "developmental pigmentation" evidence=IMP

UNIPROTKB|E1C5X9 ATP6V0B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 111/186 (59%), Positives = 134/186 (72%)

Query:     5 GVSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIXXXXXXXXXXXXXXIHTVGVSIIGGG 64
             G+ + YT+   G +  + WFL  T+PYMW+ LGI              I+  G SIIGGG
Sbjct:    21 GIGICYTIFDLGFRFDVAWFLTETSPYMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGG 80

Query:    65 VKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFG 124
             VKAPRIKTKNL+S+IFCEAVAIYG+I AIV+S   E ++   T + + ++N   G+ MFG
Sbjct:    81 VKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSGV-TPETIGAKNYHAGFSMFG 139

Query:   125 AGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTS 184
             AGL+VG  NLFCG+ VGIVGSGAALADA N +LFVKILIVEIFGSAIGLFG+IV I  TS
Sbjct:   140 AGLTVGFSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTS 199

Query:   185 KVKMGN 190
             KVKMGN
Sbjct:   200 KVKMGN 205

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2RL73 ATP6V0B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 113/186 (60%), Positives = 136/186 (73%)

Query:     6 VSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIXXXXXXXXXXXXXXIHTVGVSIIGGGV 65
             V + YT+   G +  + WFL  T+P+MW+ LGI              I+  G SIIGGGV
Sbjct:    22 VGICYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGV 81

Query:    66 KAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTD-QAVISQNIFGGYLMFG 124
             KAPRIKTKNL+S+IFCEAVAIYG+I AIV+S   E ++  +TD QA+  +N   GY MFG
Sbjct:    82 KAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFS--ATDPQAIGHRNYHAGYSMFG 139

Query:   125 AGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTS 184
             AGL+VGL NLFCG+ VGIVGSGAALADA N +LFVKILIVEIFGSAIGLFG+IV I  TS
Sbjct:   140 AGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTS 199

Query:   185 KVKMGN 190
             +VKMG+
Sbjct:   200 RVKMGD 205

GO:0016021 "integral to membrane" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q2TA24 ATP6V0B "V-type proton ATPase 21 kDa proteolipid subunit" [Bos taurus (taxid:9913)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 112/186 (60%), Positives = 136/186 (73%)

Query:     6 VSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIXXXXXXXXXXXXXXIHTVGVSIIGGGV 65
             V + YT+   G +  + WFL  T+P+MW+ LGI              I+  G SIIGGGV
Sbjct:    22 VGICYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGV 81

Query:    66 KAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTD-QAVISQNIFGGYLMFG 124
             KAPRIKTKNL+S+IFCEAVAIYG+I AIV+S   E ++  +TD +A+  +N   GY MFG
Sbjct:    82 KAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFS--ATDPKAIGHRNYHAGYSMFG 139

Query:   125 AGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTS 184
             AGL+VGL NLFCG+ VGIVGSGAALADA N +LFVKILIVEIFGSAIGLFG+IV I  TS
Sbjct:   140 AGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTS 199

Query:   185 KVKMGN 190
             +VKMG+
Sbjct:   200 RVKMGD 205

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

RGD|1308303 Atp6v0b "ATPase, H+ transporting, lysosomal V0 subunit B" [Rattus norvegicus (taxid:10116)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 112/186 (60%), Positives = 136/186 (73%)

Query:     6 VSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIXXXXXXXXXXXXXXIHTVGVSIIGGGV 65
             V + YT+   G +  + WFL  T+P+MW+ LGI              I+  G SIIGGGV
Sbjct:    22 VGICYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGV 81

Query:    66 KAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTD-QAVISQNIFGGYLMFG 124
             KAPRIKTKNL+S+IFCEAVAIYG+I AIV+S   E ++  +TD +A+  +N   GY MFG
Sbjct:    82 KAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFS--ATDPKAIGHRNYHAGYSMFG 139

Query:   125 AGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTS 184
             AGL+VGL NLFCG+ VGIVGSGAALADA N +LFVKILIVEIFGSAIGLFG+IV I  TS
Sbjct:   140 AGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTS 199

Query:   185 KVKMGN 190
             +VKMG+
Sbjct:   200 RVKMGD 205

GO:0005768 "endosome" evidence=ISO

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA;ISO

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

UNIPROTKB|Q99437 ATP6V0B "V-type proton ATPase 21 kDa proteolipid subunit" [Homo sapiens (taxid:9606)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 112/186 (60%), Positives = 136/186 (73%)

Query:     6 VSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIXXXXXXXXXXXXXXIHTVGVSIIGGGV 65
             V + YT+   G +  + WFL  T+P+MW+ LGI              I+  G SIIGGGV
Sbjct:    22 VGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGV 81

Query:    66 KAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTD-QAVISQNIFGGYLMFG 124
             KAPRIKTKNL+S+IFCEAVAIYG+I AIV+S   E ++  +TD +A+  +N   GY MFG
Sbjct:    82 KAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFS--ATDPKAIGHRNYHAGYSMFG 139

Query:   125 AGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTS 184
             AGL+VGL NLFCG+ VGIVGSGAALADA N +LFVKILIVEIFGSAIGLFG+IV I  TS
Sbjct:   140 AGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTS 199

Query:   185 KVKMGN 190
             +VKMG+
Sbjct:   200 RVKMGD 205

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=TAS

GO:0015992 "proton transport" evidence=TAS

GO:0006879 "cellular iron ion homeostasis" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0010008 "endosome membrane" evidence=TAS

GO:0030670 "phagocytic vesicle membrane" evidence=TAS

GO:0033572 "transferrin transport" evidence=TAS

GO:0051701 "interaction with host" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0090382 "phagosome maturation" evidence=TAS

MGI|MGI:1890510 Atp6v0b "ATPase, H+ transporting, lysosomal V0 subunit B" [Mus musculus (taxid:10090)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 110/185 (59%), Positives = 134/185 (72%)

Query:     6 VSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIXXXXXXXXXXXXXXIHTVGVSIIGGGV 65
             V + YT+   G +  + WFL  T+P+MW+ LGI              I+  G SIIGGGV
Sbjct:    22 VGICYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGV 81

Query:    66 KAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGA 125
             KAPRIKTKNL+S+IFCEAVAIYG+I AIV+S   E ++  +  +A+  +N   GY MFGA
Sbjct:    82 KAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSA-TEPKAIGHRNYHAGYSMFGA 140

Query:   126 GLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSK 185
             GL+VGL NLFCG+ VGIVGSGAALADA N +LFVKILIVEIFGSAIGLFG+IV I  TS+
Sbjct:   141 GLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSR 200

Query:   186 VKMGN 190
             VKMG+
Sbjct:   201 VKMGD 205

GO:0005768 "endosome" evidence=IDA

GO:0005773 "vacuole" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=ISA

GO:0015992 "proton transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IDA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=ISA

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O14046	VATO_SCHPO	No assigned EC number	0.5333	0.7531	0.8894	yes	N/A
Q2TA24	VATO_BOVIN	No assigned EC number	0.6505	0.7787	0.8926	yes	N/A
Q91V37	VATO_MOUSE	No assigned EC number	0.6432	0.7829	0.8975	yes	N/A
Q99437	VATO_HUMAN	No assigned EC number	0.6505	0.7787	0.8926	yes	N/A
P23968	VATO_YEAST	No assigned EC number	0.5740	0.6765	0.7464	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	235
TIGR01100	108	TIGR01100, V_ATP_synt_C, vacuolar ATP synthase 16	7e-13
pfam00137	66	pfam00137, ATP-synt_C, ATP synthase subunit C	2e-09
pfam00137	66	pfam00137, ATP-synt_C, ATP synthase subunit C	3e-09
COG0636	79	COG0636, AtpE, F0F1-type ATP synthase, subunit c/A	5e-07
PRK06558	159	PRK06558, PRK06558, V-type ATP synthase subunit K;	1e-04
PRK08344	157	PRK08344, PRK08344, V-type ATP synthase subunit K;	1e-04
PRK06271	213	PRK06271, PRK06271, V-type ATP synthase subunit K;	6e-04

>gnl|CDD|130170 TIGR01100, V_ATP_synt_C, vacuolar ATP synthase 16 kDa proteolipid subunit

 Score = 62.4 bits (152), Expect = 7e-13
 Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 9/109 (8%)

Query: 36  LGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVL 95
           +G A ++  S +GAA G    GV I   GV  P +  K++I V+    +AIYGL+ A+++
Sbjct: 5   MGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI 64

Query: 96  SGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVG 144
           +G L+  +  S         ++ G++  GAGL+VGL  L  G A+GIVG
Sbjct: 65  AGSLKPKSNYS---------LYKGFIHLGAGLAVGLSGLAAGFAIGIVG 104

This model describes the vacuolar ATP synthase 16 kDa proteolipid subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells [Transport and binding proteins, Cations and iron carrying compounds]. Length = 108

>gnl|CDD|215743 pfam00137, ATP-synt_C, ATP synthase subunit C

 Score = 52.1 bits (126), Expect = 2e-09
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 33 WATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 92
           A LG  L++ L+ +GA +GI   G + I    + P +  K LI     EA+AIYGL+ A
Sbjct: 1  LAALGAGLAIGLAALGAGIGIGIAGAAAIEAIARNPELFGKMLIGAALAEALAIYGLVIA 60

Query: 93 IVLSG 97
          ++L  
Sbjct: 61 LLLLF 65

Length = 66

>gnl|CDD|215743 pfam00137, ATP-synt_C, ATP synthase subunit C

 Score = 51.3 bits (124), Expect = 3e-09
 Identities = 23/66 (34%), Positives = 36/66 (54%)

Query: 120 YLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVG 179
               GAGL++GL  L  G+ +GI G+ A  A A N  LF K+LI      A+ ++GL++ 
Sbjct: 1   LAALGAGLAIGLAALGAGIGIGIAGAAAIEAIARNPELFGKMLIGAALAEALAIYGLVIA 60

Query: 180 IYMTSK 185
           + +   
Sbjct: 61  LLLLFA 66

Length = 66

>gnl|CDD|223709 COG0636, AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]

 Score = 45.7 bits (109), Expect = 5e-07
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 119 GYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAAN----SNLFVKILIVEIFGSAIGLF 174
           G  + GAGL+VGL  L  G+  GI+G+ A  A A        LF K+ I      A+G++
Sbjct: 7   GLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIY 66

Query: 175 GLIVGIYMTSKV 186
           GL++ + +    
Sbjct: 67  GLVIALLLLFAN 78

Length = 79

>gnl|CDD|235830 PRK06558, PRK06558, V-type ATP synthase subunit K; Validated

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 11/167 (6%)

Query: 21  IGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIF 80
           +  F        +A LG AL+V LS +G+A G+   G +  G   + P    K LI  + 
Sbjct: 4   LANFFTQNGGAFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLL 63

Query: 81  CEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAV 140
                +YG +   ++  ++    E S  Q         G   F A L + +V LF  ++ 
Sbjct: 64  PGTQGLYGFVIGFLIWQKIT--PELSLAQ---------GLAYFAACLPIAIVGLFSAISQ 112

Query: 141 GIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVK 187
           G V +      A     F K +I+        +   +V   + + VK
Sbjct: 113 GKVAAAGIQILAKRPEEFTKGIILAAMVETYAILAFVVSFLLLNGVK 159

Length = 159

>gnl|CDD|236246 PRK08344, PRK08344, V-type ATP synthase subunit K; Validated

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 1/154 (0%)

Query: 32  MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLIT 91
           ++  LG AL+  L+   ++ G+   G +  G   +  +     LI         IYGLIT
Sbjct: 1   VYVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALILAGLPMTQTIYGLIT 60

Query: 92  AIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIV-GSGAALA 150
             ++                 + N+     + GAGL VGL  L   +  GI+  SG    
Sbjct: 61  LFLILMYAGILGGGFKFAEPDTINLGKALALLGAGLLVGLAELLSAIPQGIICASGIGAL 120

Query: 151 DAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTS 184
                  F + +I+  +   +G+FGL+  I   S
Sbjct: 121 PRTPGKTFTQTIILAAYAELMGIFGLVFAILGLS 154

Length = 157

>gnl|CDD|180501 PRK06271, PRK06271, V-type ATP synthase subunit K; Validated

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 14/152 (9%)

Query: 29  TPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYG 88
           T   WA L   L+V L+ + +A+G      + +G   +   I  K ++  +  E  AIYG
Sbjct: 68  TAPEWAMLAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYG 126

Query: 89  LITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAA 148
           L+ AI+L   +       T  A+            GAGL+VG   L  G+  GI  +GA 
Sbjct: 127 LLVAILLLVGVFASPGVETIAAL------------GAGLAVGFAGL-SGIGQGITAAGAI 173

Query: 149 LADAANSNLFVKILIVEIFGSAIGLFGLIVGI 180
            A A + +   K L++ +      +FGL++ I
Sbjct: 174 GATARDPDAMGKGLVLAVMPETFAIFGLLIAI 205

Length = 213

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
PRK06558	159	V-type ATP synthase subunit K; Validated	100.0
KOG0233|consensus	196		100.0
PRK09621	141	V-type ATP synthase subunit K; Provisional	100.0
PRK08344	157	V-type ATP synthase subunit K; Validated	100.0
PRK14893	161	V-type ATP synthase subunit K; Provisional	99.97
PRK06649	143	V-type ATP synthase subunit K; Validated	99.97
PRK06271	213	V-type ATP synthase subunit K; Validated	99.96
PRK06271	213	V-type ATP synthase subunit K; Validated	99.96
TIGR01100	108	V_ATP_synt_C vacuolar ATP synthase 16 kDa proteoli	99.89
KOG0232|consensus	156		99.87
COG0636	79	AtpE F0F1-type ATP synthase, subunit c/Archaeal/va	99.65
PF00137	66	ATP-synt_C: ATP synthase subunit C; InterPro: IPR0	99.64
PRK06251	102	V-type ATP synthase subunit K; Validated	99.61
CHL00061	81	atpH ATP synthase CF0 C subunit	99.61
PRK07354	81	F0F1 ATP synthase subunit C; Validated	99.6
PRK13468	82	F0F1 ATP synthase subunit C; Provisional	99.58
TIGR03322	86	alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C.	99.57
PRK06876	78	F0F1 ATP synthase subunit C; Validated	99.57
PF00137	66	ATP-synt_C: ATP synthase subunit C; InterPro: IPR0	99.55
PRK13469	79	F0F1 ATP synthase subunit C; Provisional	99.52
PRK08482	105	F0F1 ATP synthase subunit C; Validated	99.51
PRK13471	85	F0F1 ATP synthase subunit C; Provisional	99.5
PRK13464	101	F0F1 ATP synthase subunit C; Provisional	99.44
PRK07558	74	F0F1 ATP synthase subunit C; Validated	99.42
COG0636	79	AtpE F0F1-type ATP synthase, subunit c/Archaeal/va	99.41
PRK06558	159	V-type ATP synthase subunit K; Validated	99.39
PRK14893	161	V-type ATP synthase subunit K; Provisional	99.39
PRK13471	85	F0F1 ATP synthase subunit C; Provisional	99.39
PRK05880	81	F0F1 ATP synthase subunit C; Validated	99.39
MTH00222	77	ATP9 ATP synthase F0 subunit 9; Provisional	99.37
PRK06251	102	V-type ATP synthase subunit K; Validated	99.36
CHL00061	81	atpH ATP synthase CF0 C subunit	99.36
PRK07159	100	F0F1 ATP synthase subunit C; Validated	99.34
PRK08344	157	V-type ATP synthase subunit K; Validated	99.34
PRK13469	79	F0F1 ATP synthase subunit C; Provisional	99.33
PRK06876	78	F0F1 ATP synthase subunit C; Validated	99.3
PRK07354	81	F0F1 ATP synthase subunit C; Validated	99.29
PRK09621	141	V-type ATP synthase subunit K; Provisional	99.29
PRK13466	66	F0F1 ATP synthase subunit C; Provisional	99.28
TIGR01100	108	V_ATP_synt_C vacuolar ATP synthase 16 kDa proteoli	99.26
PRK07558	74	F0F1 ATP synthase subunit C; Validated	99.26
PRK13467	66	F0F1 ATP synthase subunit C; Provisional	99.25
PRK13468	82	F0F1 ATP synthase subunit C; Provisional	99.21
TIGR03322	86	alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C.	99.2
TIGR01260	58	ATP_synt_c ATP synthase, F0 subunit c. This model	99.19
PRK08482	105	F0F1 ATP synthase subunit C; Validated	99.18
PRK07874	80	F0F1 ATP synthase subunit C; Validated	99.17
PRK07159	100	F0F1 ATP synthase subunit C; Validated	99.17
MTH00222	77	ATP9 ATP synthase F0 subunit 9; Provisional	99.13
PRK13464	101	F0F1 ATP synthase subunit C; Provisional	99.11
PRK05880	81	F0F1 ATP synthase subunit C; Validated	99.07
PRK13467	66	F0F1 ATP synthase subunit C; Provisional	99.03
PRK13466	66	F0F1 ATP synthase subunit C; Provisional	99.03
TIGR01260	58	ATP_synt_c ATP synthase, F0 subunit c. This model	98.97
PRK07874	80	F0F1 ATP synthase subunit C; Validated	98.93
PRK06649	143	V-type ATP synthase subunit K; Validated	98.84
KOG0233|consensus	196		98.66
KOG0232|consensus	156		98.31
KOG3025|consensus	137		97.77
KOG3025|consensus	137		96.98

>PRK06558 V-type ATP synthase subunit K; Validated

Probab=100.00  E-value=9.8e-36  Score=251.01  Aligned_cols=156  Identities=23%  Similarity=0.378  Sum_probs=146.3

Q ss_pred             HhhHhhhcChHHHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy15658         21 IGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLE  100 (235)
Q Consensus        21 ~~~~~~~~~p~~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~ki~  100 (235)
                      +.+++.+++|.+++++|++++++++++||++|+++++.+++++.+||||.++|.+++.+|||+++|||+|+++++..+++
T Consensus         4 ~~~~~~~~~~~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~lI~~~l~e~~aIyGlvva~li~~~i~   83 (159)
T PRK06558          4 LANFFTQNGGAFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVIGFLIWQKIT   83 (159)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            45567777888999999999999999999999999999999999999999999999999999999999999999999874


Q ss_pred             ccccccchhhhhhccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy15658        101 QYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGI  180 (235)
Q Consensus       101 ~~~~~~~~~~~~~~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~  180 (235)
                      .           .+++.+++.++++||++|+++++||++||+++++++++++||||.|+|+++..+|+|+++|||||+++
T Consensus        84 ~-----------~~~~~~g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~~~li~~~~~E~~aI~glvvai  152 (159)
T PRK06558         84 P-----------ELSLAQGLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFTKGIILAAMVETYAILAFVVSF  152 (159)
T ss_pred             c-----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3           35678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccc
Q psy15658        181 YMTSKVK  187 (235)
Q Consensus       181 ll~~~~~  187 (235)
                      +++++.+
T Consensus       153 ll~~~~~  159 (159)
T PRK06558        153 LLLNGVK  159 (159)
T ss_pred             HHhccCC
Confidence            9887643

>KOG0233|consensus

Probab=100.00  E-value=1.3e-35  Score=252.29  Aligned_cols=183  Identities=70%  Similarity=1.121  Sum_probs=173.1

Q ss_pred             chhhhhhhhhcCCcccccHhhHhhhcChHHHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHH
Q psy15658          3 ETGVSLFYTLSGQGEKLSIGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCE   82 (235)
Q Consensus         3 ~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~e   82 (235)
                      -..+.+|+++.|.+++++++||+.+.+|+.|+.+|++++++|+.+|++||+-+.|++..++..|.||+.+|+++.++|||
T Consensus        12 ~~~~gl~~l~~g~g~~~~~g~fl~~tsp~~wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAPRI~TKnLisIIfCE   91 (196)
T KOG0233|consen   12 AIIKGLFFLVAGYGERFDLGWFLLRTSPYMWASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISIIFCE   91 (196)
T ss_pred             HHHHHHHHHHhCccccceeeeeeccCChhHHHHhhHHHhhhhhhhhhheeEEEecceeecCcccCCcccccceEEEEeeh
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccccccchhhhhhccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHH
Q psy15658         83 AVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKIL  162 (235)
Q Consensus        83 a~~IYGlIiafli~~ki~~~~~~~~~~~~~~~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~l  162 (235)
                      +++|||+|+++++..|+++++   ++..+...++..|+..|++|+.+|++++.||++.|++|+++..++|+||.+|.|.+
T Consensus        92 avaiyglI~Aivls~kl~~~~---~~~~y~~~n~~~gy~lF~aGl~vG~~nl~cglavGIigs~aalaDA~n~tLFvKil  168 (196)
T KOG0233|consen   92 AVAIYGLIMAIVLSTKLENVS---SSKAYGAQNLYTGYALFGAGLIVGLCNLVCGLAVGIIGSGAALADAANPTLFVKIL  168 (196)
T ss_pred             HHHHHHHHHHHHHHhhhccCC---chhhhccchhhhhHHHhhhhHHHHHHHHHhhhhhhhhchhhhhhcccCccceeeee
Confidence            999999999999999998765   23456678899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15658        163 IVEIFGSAIGLFGLIVGIYMTSKVKM  188 (235)
Q Consensus       163 I~~a~~EaiaIyGLVva~ll~~~~~~  188 (235)
                      +.++|+.+++|||+|+++++..|..+
T Consensus       169 ivEIfgSaiGLfGlIvgi~ms~KA~~  194 (196)
T KOG0233|consen  169 IVEIFGSAIGLFGLIVGIVMSSKASM  194 (196)
T ss_pred             hhhhHHHHHHHHHHHHHhhccccccc
Confidence            99999999999999999999877554

>PRK09621 V-type ATP synthase subunit K; Provisional

Probab=100.00  E-value=2.7e-32  Score=226.26  Aligned_cols=137  Identities=21%  Similarity=0.314  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhhh
Q psy15658         33 WATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVI  112 (235)
Q Consensus        33 l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~ki~~~~~~~~~~~~~  112 (235)
                      +.++|++++++++++||+||++++|+++++++.|+||.++|.++..++||+|+|||+|+++++..+++.           
T Consensus         4 ~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~~i~~~lP~tq~IYG~ii~~li~~~~~~-----------   72 (141)
T PRK09621          4 MSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKIIGLSAMPSSQSIYGLILMLLLNDAIKD-----------   72 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHccc-----------
Confidence            578999999999999999999999999999999999999999999999999999999999999988743           


Q ss_pred             hccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15658        113 SQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYM  182 (235)
Q Consensus       113 ~~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll  182 (235)
                        +...++..+++||++|+++++||++||+++++++++++||||.|+|+++..+++|+++||+||+++++
T Consensus        73 --~~~~~~~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe~~~k~~i~~alvE~~ai~~lv~a~ll  140 (141)
T PRK09621         73 --GKLSALSGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIYGKSFAAIGIVESFALFAFVFALLL  140 (141)
T ss_pred             --chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              13478899999999999999999999999999999999999999999999999999999999999986

>PRK08344 V-type ATP synthase subunit K; Validated

Probab=100.00  E-value=4.4e-32  Score=228.43  Aligned_cols=152  Identities=24%  Similarity=0.342  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhhh
Q psy15658         33 WATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVI  112 (235)
Q Consensus        33 l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~ki~~~~~~~~~~~~~  112 (235)
                      |+++|++++++++++|++||++++|++++++++||||+++|++++.++||+|+|||+|++|++..+.+.....-..+..+
T Consensus         2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~~~~~~li~~a~~~t~~IYGlvi~~~i~~~~~~~~~~~~~~~~~   81 (157)
T PRK08344          2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALILAGLPMTQTIYGLITLFLILMYAGILGGGFKFAEPD   81 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccccccccc
Confidence            67899999999999999999999999999999999999999999999999999999999987754432210000000012


Q ss_pred             hccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15658        113 SQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANS-NLFVKILIVEIFGSAIGLFGLIVGIYMTS  184 (235)
Q Consensus       113 ~~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~P-elf~k~lI~~a~~EaiaIyGLVva~ll~~  184 (235)
                      +.++.+++.++++||++|+++++||++||+++++++++++||| |+|+|+++..+|+|+++||+|+++++++.
T Consensus        82 ~~~l~~g~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P~~l~~~~ii~~a~~Ea~ai~~lvvallll~  154 (157)
T PRK08344         82 TINLGKALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTPGKTFTQTIILAAYAELMGIFGLVFAILGLS  154 (157)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667899999999999999999999999999999999999999 99999999999999999999999998764

>PRK14893 V-type ATP synthase subunit K; Provisional

Probab=99.97  E-value=1.6e-30  Score=219.85  Aligned_cols=148  Identities=21%  Similarity=0.374  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhh
Q psy15658         32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAV  111 (235)
Q Consensus        32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~ki~~~~~~~~~~~~  111 (235)
                      .+.++|++++++++++|+++|+++++.++++++.||||.++++++..+++|+++|||+|+++++..+.+..+.      .
T Consensus         9 ~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~~~li~~al~Ea~aIyglvia~lll~~~~~~~~------~   82 (161)
T PRK14893          9 ALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILLLVFSGLLGG------G   82 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC------c
Confidence            7789999999999999999999999999999999999999999999999999999999999999886543210      1


Q ss_pred             hhccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15658        112 ISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSK  185 (235)
Q Consensus       112 ~~~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~  185 (235)
                      +..++.+++.++++||++|+++++||++||+++++++++++||||.|.|+++..+++|+++||||++++++++.
T Consensus        83 ~~~~~~~~~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~~~li~~al~Et~~Iyglvv~~lll~~  156 (161)
T PRK14893         83 EGLSVTAGLVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFARGIIFSALPETQAIYGFLIAILLMVF  156 (161)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            24677899999999999999999999999999999999999999999999999999999999999999998754

>PRK06649 V-type ATP synthase subunit K; Validated

Probab=99.97  E-value=2.6e-30  Score=214.56  Aligned_cols=134  Identities=26%  Similarity=0.343  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHhhhhhchhhhHhhhhhhhccccc-----cccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q psy15658         33 WATLGIALSVALSVVGAALGIHTVGVSIIGGGVK-----APRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKST  107 (235)
Q Consensus        33 l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~-----~Pe~~~k~lI~~af~ea~~IYGlIiafli~~ki~~~~~~~~  107 (235)
                      ++++|++++++++++||++|++++|+++.+++.|     +||.+. .++.+.+|.||+|||||+++++...         
T Consensus         3 ~g~lG~a~a~~la~iGSA~G~g~aG~Aa~Gv~~~~~~~~~p~~f~-~lvl~~lP~TqgiYG~vi~~~i~~~---------   72 (143)
T PRK06649          3 IGLIGAAAALGISAIGSALGMGAAGMAAIGAWKRCYMQGKPAPFL-LIVFVGAPLTQTIYGYILMNTLLGV---------   72 (143)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHccHhhhcCCchHHH-HHHHHhchhHHHHHHHHHHHHHHhh---------
Confidence            6899999999999999999999999999999999     999998 9999999999999999999999862         


Q ss_pred             hhhhhhccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15658        108 DQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYM  182 (235)
Q Consensus       108 ~~~~~~~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll  182 (235)
                            .++.++|.++++||++|++++.||+.||+++++++++++||||.|+|+++..+|+|+++||+||+++++
T Consensus        73 ------~s~~~g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~~Et~Al~~lv~s~~~  141 (143)
T PRK06649         73 ------MSQTNPWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGLIETVALFVMVFLMIF  141 (143)
T ss_pred             ------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  346789999999999999999999999999999999999999999999999999999999999999876

>PRK06271 V-type ATP synthase subunit K; Validated

Probab=99.96  E-value=5e-29  Score=218.82  Aligned_cols=138  Identities=24%  Similarity=0.412  Sum_probs=130.0

Q ss_pred             HHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhhhhc
Q psy15658         35 TLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQ  114 (235)
Q Consensus        35 ~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~ki~~~~~~~~~~~~~~~  114 (235)
                      .+|++++++++++|+++|+++++.+++++++||||.++|++++.+++|+++|||+++++++..+.+.             
T Consensus         2 ~igagla~glaa~Ga~~G~g~~g~a~~~~~ar~Pe~~~~~li~~al~e~~~Iyglvia~ll~~~~~~-------------   68 (213)
T PRK06271          2 AIGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKFGTAIVFQALPQTQGLYGFLVAILILFVFKT-------------   68 (213)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------------
Confidence            5799999999999999999999999999999999999999999999999999999999999987532             


Q ss_pred             cHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15658        115 NIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVKM  188 (235)
Q Consensus       115 s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~~~~  188 (235)
                        ..+|.++++||++|++++ |+++||+++++++++++||||.|+|+++..+++|+++|||||++++++.+...
T Consensus        69 --~~g~~~lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~~~~~E~~aiyGlIva~ll~~~~~~  139 (213)
T PRK06271         69 --APEWAMLAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGLLVAILLLVGVFA  139 (213)
T ss_pred             --HhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence              268999999999999999 88999999999999999999999999999999999999999999999876543

>PRK06271 V-type ATP synthase subunit K; Validated

Probab=99.96  E-value=1.6e-28  Score=215.55  Aligned_cols=142  Identities=28%  Similarity=0.425  Sum_probs=132.8

Q ss_pred             hHHHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccchh
Q psy15658         30 PYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQ  109 (235)
Q Consensus        30 p~~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~ki~~~~~~~~~~  109 (235)
                      |..|.++|++++++++++ |++|+++++++++++.+||||.++|+++..+|||+++|||+|+++++..++...       
T Consensus        69 ~~g~~~lgagL~vGla~~-sa~g~G~~g~a~~~a~a~~p~~f~~~li~~~~~E~~aiyGlIva~ll~~~~~~~-------  140 (213)
T PRK06271         69 APEWAMLAAGLAVGLAGL-SAIGQGIAASAGLGAVAEDDSIFGKAMVFSVLPETQAIYGLLVAILLLVGVFAS-------  140 (213)
T ss_pred             HhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-------
Confidence            568899999999999999 789999999999999999999999999999999999999999999999886431       


Q ss_pred             hhhhccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15658        110 AVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSK  185 (235)
Q Consensus       110 ~~~~~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~  185 (235)
                           +..+++.++++||++|++++ ||++||+++++++++++||||.+.|.++..+++|+++||++++++++++.
T Consensus       141 -----~~~~g~~~~~aGl~~Gla~~-sgig~G~~~~~~~~~~arqPe~~~~~~i~~a~~Ea~~i~~lvvalil~f~  210 (213)
T PRK06271        141 -----PGVETIAALGAGLAVGFAGL-SGIGQGITAAGAIGATARDPDAMGKGLVLAVMPETFAIFGLLIAILIMLG  210 (213)
T ss_pred             -----chhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 23468999999999999999 99999999999999999999999999999999999999999999998754

>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit

Probab=99.89  E-value=1e-23  Score=168.14  Aligned_cols=107  Identities=36%  Similarity=0.724  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhh
Q psy15658         32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKSTDQAV  111 (235)
Q Consensus        32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~ki~~~~~~~~~~~~  111 (235)
                      +++++|++++++|+++||+||++++|.+.+++..++||+++|++++++|||+|+|||||++++++.|++..+        
T Consensus         1 ~~~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~~~--------   72 (108)
T TIGR01100         1 FFGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKPKS--------   72 (108)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc--------
Confidence            368999999999999999999999997777777788999999999999999999999999999999985421        


Q ss_pred             hhccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHH
Q psy15658        112 ISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGA  147 (235)
Q Consensus       112 ~~~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa  147 (235)
                       .+++.+++.+|++||++|++++.||++||++++++
T Consensus        73 -~~s~~~g~~~~~aGL~vGl~~l~sgi~~Gi~G~~g  107 (108)
T TIGR01100        73 -NYSLYKGFIHLGAGLAVGLSGLAAGFAIGIVGDAG  107 (108)
T ss_pred             -ccCHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Confidence             35788999999999999999999999999998764

The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.

>KOG0232|consensus

Probab=99.87  E-value=2.6e-22  Score=167.98  Aligned_cols=151  Identities=33%  Similarity=0.655  Sum_probs=140.3

Q ss_pred             hcChHHHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy15658         27 TTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLEQYNEKS  106 (235)
Q Consensus        27 ~~~p~~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~ki~~~~~~~  106 (235)
                      ...| ++...|++.++.++++|+++|+.+.+...+....++||+.+|+++++++++..+|||++++.++..++++..   
T Consensus         4 ~ya~-ff~~~g~~~a~v~s~lgaa~Gtak~g~GI~~~~v~rpelimkSiiPvVmAgii~iYglv~av~i~g~i~~~~---   79 (156)
T KOG0232|consen    4 EYAP-FFGIMGAAAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIITIYGLVVAVVISGDIGPKG---   79 (156)
T ss_pred             chhh-HHHHhhHHHHHHHHHHHHHHhhhhcchhhhhhhhcChHHHHHHHHHHHHHhHHHHHHHHHHHhcccccCCcc---
Confidence            3445 779999999999999999999999999999999999999999999999999999999999999999886532   


Q ss_pred             chhhhhhccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy15658        107 TDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKV  186 (235)
Q Consensus       107 ~~~~~~~~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~~  186 (235)
                           +.+++.+++..+++|+.+|++++.+|+++|+++.+++...+|||++|..+++..+|.|.+++|||++++.+..+.
T Consensus        80 -----~~~~l~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQPr~fv~~iLiLif~evlGLygLiva~~l~~~~  154 (156)
T KOG0232|consen   80 -----TAYSLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQPRLFVGMILILIFAEVLGLYGLIVALALLTVG  154 (156)
T ss_pred             -----cccchhhHHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCchhhhhHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence                 136789999999999999999999999999999999999999999999999999999999999999999987654

>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]

Probab=99.65  E-value=9.3e-16  Score=116.22  Aligned_cols=70  Identities=34%  Similarity=0.580  Sum_probs=67.7

Q ss_pred             HHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy15658        118 GGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSKVK  187 (235)
Q Consensus       118 ~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~~~  187 (235)
                      .++.++++||++|++++++|++||+++++++++++||||    +|+|+++..+++|+++||+||+++++.+++|
T Consensus         6 ~~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~~~   79 (79)
T COG0636           6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFANP   79 (79)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            789999999999999999999999999999999999999    9999999999999999999999999988764

>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.64  E-value=1.9e-15  Score=110.16  Aligned_cols=66  Identities=39%  Similarity=0.605  Sum_probs=63.7

Q ss_pred             HHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15658        120 YLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSK  185 (235)
Q Consensus       120 ~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~  185 (235)
                      |.++++|+++|++++++|+++|+++++++++++||||+|+|+++..+++|+++||+|+++++++++
T Consensus         1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~~~~E~~~i~glv~~~~l~~~   66 (66)
T PF00137_consen    1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGAAFIEALGIYGLVVALLLLFK   66 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999999999999999999999999999999999998764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....

>PRK06251 V-type ATP synthase subunit K; Validated

Probab=99.61  E-value=3.3e-15  Score=118.25  Aligned_cols=74  Identities=24%  Similarity=0.377  Sum_probs=68.9

Q ss_pred             ccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy15658        114 QNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVK  187 (235)
Q Consensus       114 ~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~~~  187 (235)
                      .+...+..++++|+++|+++++||++||+++++++++++||||.|+++++..+++|+++||||++++++++.+|
T Consensus        29 ~~~~~~~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~ii~~al~Ea~aIyglvVa~lLlf~~~  102 (102)
T PRK06251         29 TAQGFAGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGILFAVLMLFGKF  102 (102)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            34567778999999999999999999999999999999999999999999999999999999999999887653

>CHL00061 atpH ATP synthase CF0 C subunit

Probab=99.61  E-value=4.6e-15  Score=113.08  Aligned_cols=73  Identities=22%  Similarity=0.334  Sum_probs=67.6

Q ss_pred             HHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15658        116 IFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSKVKM  188 (235)
Q Consensus       116 ~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~~~~  188 (235)
                      +..++..+++|+++|++++++|++||+++++++++++||||    +++++++..++.|+++||+|++++++++.+|+
T Consensus         4 ~~~~~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~~p~   80 (81)
T CHL00061          4 LISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF   80 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            34567899999999999999999999999999999999997    56779999999999999999999999998875

>PRK07354 F0F1 ATP synthase subunit C; Validated

Probab=99.60  E-value=7.3e-15  Score=111.87  Aligned_cols=73  Identities=22%  Similarity=0.297  Sum_probs=67.4

Q ss_pred             HHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchh----hHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15658        116 IFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNL----FVKILIVEIFGSAIGLFGLIVGIYMTSKVKM  188 (235)
Q Consensus       116 ~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pel----f~k~lI~~a~~EaiaIyGLVva~ll~~~~~~  188 (235)
                      +..++.++++|+++|++++++|++||+++++++++++||||.    ++++++..+++|+++||+|++++++++.+|+
T Consensus         4 ~~~~~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~~p~   80 (81)
T PRK07354          4 ITSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFANPF   80 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            346678999999999999999999999999999999999985    6677999999999999999999999988774

>PRK13468 F0F1 ATP synthase subunit C; Provisional

Probab=99.58  E-value=1.4e-14  Score=110.64  Aligned_cols=74  Identities=14%  Similarity=0.146  Sum_probs=67.7

Q ss_pred             cHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchh----hHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15658        115 NIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNL----FVKILIVEIFGSAIGLFGLIVGIYMTSKVKM  188 (235)
Q Consensus       115 s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pel----f~k~lI~~a~~EaiaIyGLVva~ll~~~~~~  188 (235)
                      ++..+..++++|+++|++++++|++||+++++++++++||||.    ++++++..+++|+++||+|++++++++.+|+
T Consensus         3 ~~~~~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllfa~p~   80 (82)
T PRK13468          3 TLIAVVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLFANPF   80 (82)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3567789999999999999999999999999999999999985    4577788999999999999999999998876

>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C

Probab=99.57  E-value=1.3e-14  Score=111.68  Aligned_cols=76  Identities=12%  Similarity=0.101  Sum_probs=69.7

Q ss_pred             ccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchh----hHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy15658        114 QNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNL----FVKILIVEIFGSAIGLFGLIVGIYMTSKVKMG  189 (235)
Q Consensus       114 ~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pel----f~k~lI~~a~~EaiaIyGLVva~ll~~~~~~~  189 (235)
                      .++..++..+++|+++|++++++|++||+++++++++++||||.    ++++++..+++|+++||++++++++++.+|+.
T Consensus         3 ~~~~~~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf~~p~~   82 (86)
T TIGR03322         3 LTIIAVASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFANPFW   82 (86)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567889999999999999999999999999999999999985    67888889999999999999999999988763

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.

>PRK06876 F0F1 ATP synthase subunit C; Validated

Probab=99.57  E-value=2.1e-14  Score=108.73  Aligned_cols=72  Identities=19%  Similarity=0.303  Sum_probs=66.6

Q ss_pred             HHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy15658        116 IFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSKVK  187 (235)
Q Consensus       116 ~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~~~  187 (235)
                      +..+..++++|+++|++++++|+|||.++++++++++||||    +++++++..+++|+++||+|++++++++.+|
T Consensus         3 ~~~~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~~p   78 (78)
T PRK06876          3 LIMGLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFANP   78 (78)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            34567899999999999999999999999999999999997    5669999999999999999999999998765

>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.55  E-value=9.3e-15  Score=106.54  Aligned_cols=66  Identities=39%  Similarity=0.616  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658         33 WATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQ   98 (235)
Q Consensus        33 l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~k   98 (235)
                      |+++|++++++++++|+++|+++++++++++.+||||+++|+++..+|+|+++|||++++++++++
T Consensus         1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~~~~~~li~~~~~E~~~i~glv~~~~l~~~   66 (66)
T PF00137_consen    1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPELFTKMLIGAAFIEALGIYGLVVALLLLFK   66 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999999999999999999999999999999999998864

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....

>PRK13469 F0F1 ATP synthase subunit C; Provisional

Probab=99.52  E-value=8.3e-14  Score=105.64  Aligned_cols=70  Identities=21%  Similarity=0.402  Sum_probs=64.3

Q ss_pred             HHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy15658        116 IFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSKV  186 (235)
Q Consensus       116 ~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~~  186 (235)
                      +..++.++++|+++ ++++++|++||.++++++++++||||    +++++++..+++|+++||||++++++++.+
T Consensus         6 ~~~~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~illf~~   79 (79)
T PRK13469          6 FVMGMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFVN   79 (79)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            46788999999999 99999999999999999999999997    566678999999999999999999988753

>PRK08482 F0F1 ATP synthase subunit C; Validated

Probab=99.51  E-value=1.1e-13  Score=110.12  Aligned_cols=74  Identities=16%  Similarity=0.327  Sum_probs=68.9

Q ss_pred             cHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15658        115 NIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSKVKM  188 (235)
Q Consensus       115 s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~~~~  188 (235)
                      +...+..++++|+++|++++++|+|||.++++++++++||||    +++++++..+++|+++||++++++++++.+|+
T Consensus        26 ~~i~~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf~np~  103 (105)
T PRK08482         26 DMIKSYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALYANPF  103 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            456778999999999999999999999999999999999997    56679999999999999999999999999886

>PRK13471 F0F1 ATP synthase subunit C; Provisional

Probab=99.50  E-value=1.5e-13  Score=105.62  Aligned_cols=71  Identities=20%  Similarity=0.350  Sum_probs=65.4

Q ss_pred             cHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhh----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15658        115 NIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLF----VKILIVEIFGSAIGLFGLIVGIYMTSK  185 (235)
Q Consensus       115 s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf----~k~lI~~a~~EaiaIyGLVva~ll~~~  185 (235)
                      ++..+..++++|+++|++++++|+++|.++++++++++||||.+    +++++..+++|+++||+|++++++++.
T Consensus        10 ~~~~~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lllf~   84 (85)
T PRK13471         10 ALILLGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILLV   84 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45677899999999999999999999999999999999999855    488999999999999999999998764

>PRK13464 F0F1 ATP synthase subunit C; Provisional

Probab=99.44  E-value=6.4e-13  Score=105.02  Aligned_cols=73  Identities=18%  Similarity=0.281  Sum_probs=69.3

Q ss_pred             HHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Q psy15658        118 GGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSKVKMGN  190 (235)
Q Consensus       118 ~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~~~~~~  190 (235)
                      .+...+++|+.+|++++++|+|+|.+.++++++++||||    +++++++..++.|+++||++++++++++++|+..
T Consensus        12 ~~~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa~P~~~   88 (101)
T PRK13464         12 NGLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYANPLAI   88 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            467889999999999999999999999999999999997    7899999999999999999999999999999876

>PRK07558 F0F1 ATP synthase subunit C; Validated

Probab=99.42  E-value=1.2e-12  Score=98.39  Aligned_cols=66  Identities=20%  Similarity=0.311  Sum_probs=62.4

Q ss_pred             HHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15658        118 GGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTS  184 (235)
Q Consensus       118 ~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~  184 (235)
                      .+...+++|+++ ++++++|+|+|.++++++++++||||    +++++++..++.|+++||++++++++++
T Consensus         4 ~~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lllf   73 (74)
T PRK07558          4 EALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLF   73 (74)
T ss_pred             hHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456789999999 99999999999999999999999998    8999999999999999999999999875

>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]

Probab=99.41  E-value=4e-13  Score=101.83  Aligned_cols=68  Identities=29%  Similarity=0.490  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhHhhhhhhhcccccccc----ccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15658         32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPR----IKTKNLISVIFCEAVAIYGLITAIVLSGQL   99 (235)
Q Consensus        32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe----~~~k~lI~~af~ea~~IYGlIiafli~~ki   99 (235)
                      .+.++|++++++++++|+++|+|+++.+..++.+||||    +++|+++..+|+|+++||++++++++..+.
T Consensus         7 ~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~~   78 (79)
T COG0636           7 GLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFAN   78 (79)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            46889999999999999999999999999999999999    999999999999999999999999998764

>PRK06558 V-type ATP synthase subunit K; Validated

Probab=99.39  E-value=1.5e-12  Score=110.25  Aligned_cols=71  Identities=28%  Similarity=0.449  Sum_probs=67.6

Q ss_pred             HHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy15658        117 FGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVK  187 (235)
Q Consensus       117 ~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~~~  187 (235)
                      ...+.++++++++|+++++|+++||+++++++++.+||||.++|.++..+++|+++||||+++++++++.+
T Consensus        13 ~~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~lI~~~l~e~~aIyGlvva~li~~~i~   83 (159)
T PRK06558         13 GAFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKALILQLLPGTQGLYGFVIGFLIWQKIT   83 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            34689999999999999999999999999999999999999999999999999999999999999988763

>PRK14893 V-type ATP synthase subunit K; Provisional

Probab=99.39  E-value=2e-12  Score=109.79  Aligned_cols=77  Identities=22%  Similarity=0.397  Sum_probs=71.5

Q ss_pred             ccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Q psy15658        114 QNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVKMGN  190 (235)
Q Consensus       114 ~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~~~~~~  190 (235)
                      .+...++..+++++++|++++++++++|+++++++++++||||.+.++++..+++|+++|||||++++++++++..+
T Consensus         4 ~~~~~~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~~~li~~al~Ea~aIyglvia~lll~~~~~~~   80 (161)
T PRK14893          4 IALGTALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFARGIIFSALPETQAIYGFLIAILLLVFSGLLG   80 (161)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence            34556899999999999999999999999999999999999999999999999999999999999999999776653

>PRK13471 F0F1 ATP synthase subunit C; Provisional

Probab=99.39  E-value=9.3e-13  Score=101.29  Aligned_cols=67  Identities=18%  Similarity=0.392  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccc----hhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658         32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKT----KNLISVIFCEAVAIYGLITAIVLSGQ   98 (235)
Q Consensus        32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~----k~lI~~af~ea~~IYGlIiafli~~k   98 (235)
                      ...++|++++++++++|+++|+|.++.+++++++||||.++    ++++..+++|+++||+++++|+++..
T Consensus        14 ~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lllf~   84 (85)
T PRK13471         14 LGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILLV   84 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56789999999999999999999999999999999999876    68999999999999999999998764

>PRK05880 F0F1 ATP synthase subunit C; Validated

Probab=99.39  E-value=3.7e-12  Score=97.19  Aligned_cols=72  Identities=17%  Similarity=0.186  Sum_probs=66.7

Q ss_pred             HHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15658        117 FGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSKVKM  188 (235)
Q Consensus       117 ~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~~~~  188 (235)
                      ..+..++++|+++|++++++|+|+|.+.++++++++||||    +++++++..+++|++.+|++++.+++.+.+|+
T Consensus         5 ~~~~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~f~~p~   80 (81)
T PRK05880          5 IAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATPV   80 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            3557899999999999999999999999999999999997    78999999999999999999999998888775

>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional

Probab=99.37  E-value=4.3e-12  Score=96.01  Aligned_cols=69  Identities=23%  Similarity=0.323  Sum_probs=64.1

Q ss_pred             HHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15658        116 IFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSK  185 (235)
Q Consensus       116 ~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~  185 (235)
                      +..+...+++|+++ ++++++|+|+|.+.++.+++++||||    +++++++..++.|+++||++++++++++.
T Consensus         4 ~~~~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa   76 (77)
T MTH00222          4 ILTAAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFA   76 (77)
T ss_pred             HHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44667899999999 99999999999999999999999997    78999999999999999999999998764

>PRK06251 V-type ATP synthase subunit K; Validated

Probab=99.36  E-value=1e-12  Score=104.17  Aligned_cols=67  Identities=24%  Similarity=0.350  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658         32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQ   98 (235)
Q Consensus        32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~k   98 (235)
                      ...++|++++++++++|+++|++.++++++++++||||.++++++..+|+|+++|||++++|+++..
T Consensus        34 ~~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~~ii~~al~Ea~aIyglvVa~lLlf~  100 (102)
T PRK06251         34 AGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGTVLIFVAIGEGIAVYGILFAVLMLFG  100 (102)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4467999999999999999999999999999999999999999999999999999999999998754

>CHL00061 atpH ATP synthase CF0 C subunit

Probab=99.36  E-value=1.6e-12  Score=99.20  Aligned_cols=67  Identities=28%  Similarity=0.453  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhHhhhhhhhcccccccccc----chhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658         32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIK----TKNLISVIFCEAVAIYGLITAIVLSGQ   98 (235)
Q Consensus        32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~----~k~lI~~af~ea~~IYGlIiafli~~k   98 (235)
                      .+..+|++++++++++|+++|+|.++++++++++||||..    +++++..+|.|+++||++++++++...
T Consensus         7 ~~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~   77 (81)
T CHL00061          7 AASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3578999999999999999999999999999999999965    459999999999999999999998776

>PRK07159 F0F1 ATP synthase subunit C; Validated

Probab=99.34  E-value=5.9e-12  Score=99.48  Aligned_cols=67  Identities=21%  Similarity=0.253  Sum_probs=61.5

Q ss_pred             HHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15658        118 GGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSK  185 (235)
Q Consensus       118 ~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~  185 (235)
                      ..+..+++|+++ ++++++|++||.++++++++++||||    +++++++..+++|+++||+|++++++++.
T Consensus        29 ~~~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lllf~   99 (100)
T PRK07159         29 LKAAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIFV   99 (100)
T ss_pred             hhHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            336889999999 99999999999999999999999998    47779999999999999999999998764

>PRK08344 V-type ATP synthase subunit K; Validated

Probab=99.34  E-value=4.8e-12  Score=107.03  Aligned_cols=66  Identities=32%  Similarity=0.432  Sum_probs=62.6

Q ss_pred             HHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15658        120 YLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSK  185 (235)
Q Consensus       120 ~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~  185 (235)
                      |..+++++++|+++++|++++|+++++++++.+||||.+.|+++..+++|+++|||||+++++...
T Consensus         2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~~~~~~li~~a~~~t~~IYGlvi~~~i~~~   67 (157)
T PRK08344          2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKNFRNALILAGLPMTQTIYGLITLFLILMY   67 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            678999999999999999999999999999999999999999999999999999999999776544

>PRK13469 F0F1 ATP synthase subunit C; Provisional

Probab=99.33  E-value=2.3e-12  Score=97.72  Aligned_cols=66  Identities=27%  Similarity=0.410  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccc----hhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658         32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKT----KNLISVIFCEAVAIYGLITAIVLSGQ   98 (235)
Q Consensus        32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~----k~lI~~af~ea~~IYGlIiafli~~k   98 (235)
                      .+.++|+++++ ++++|+++|+|.++++++++++||||.++    ++++..+|+|+++|||++++++++..
T Consensus         9 ~~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~illf~   78 (79)
T PRK13469          9 GMSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFV   78 (79)
T ss_pred             HHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46889999999 99999999999999999999999999654    46899999999999999999998653

>PRK06876 F0F1 ATP synthase subunit C; Validated

Probab=99.30  E-value=4.5e-12  Score=96.12  Aligned_cols=67  Identities=24%  Similarity=0.433  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccc----hhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658         32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKT----KNLISVIFCEAVAIYGLITAIVLSGQ   98 (235)
Q Consensus        32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~----k~lI~~af~ea~~IYGlIiafli~~k   98 (235)
                      ...++|++++++++++|+++|+|.++++++++++||||..+    ++++..+++|+.+||++++++++...
T Consensus         6 ~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~   76 (78)
T PRK06876          6 GLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFA   76 (78)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35789999999999999999999999999999999999765    79999999999999999999998765

>PRK07354 F0F1 ATP synthase subunit C; Validated

Probab=99.29  E-value=6e-12  Score=95.88  Aligned_cols=66  Identities=29%  Similarity=0.480  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccc----hhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658         33 WATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKT----KNLISVIFCEAVAIYGLITAIVLSGQ   98 (235)
Q Consensus        33 l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~----k~lI~~af~ea~~IYGlIiafli~~k   98 (235)
                      +.++|++++++++++|+++|+|.++++++++++||||.++    ++++..+|+|+.+||++++++++...
T Consensus         8 ~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~   77 (81)
T PRK07354          8 ASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999754    57999999999999999999998765

>PRK09621 V-type ATP synthase subunit K; Provisional

Probab=99.29  E-value=1.4e-11  Score=102.63  Aligned_cols=69  Identities=19%  Similarity=0.314  Sum_probs=65.1

Q ss_pred             HHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15658        120 YLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVKM  188 (235)
Q Consensus       120 ~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~~~~  188 (235)
                      +.++++++++++++++|+|+++++|++++....|+||.|.|.+++.++||+++|||||++++++.+.+.
T Consensus         4 ~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~~i~~~lP~tq~IYG~ii~~li~~~~~~   72 (141)
T PRK09621          4 MSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKIIGLSAMPSSQSIYGLILMLLLNDAIKD   72 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHccc
Confidence            567899999999999999999999999999999999999999999999999999999999999877544

>PRK13466 F0F1 ATP synthase subunit C; Provisional

Probab=99.28  E-value=1.8e-11  Score=90.19  Aligned_cols=57  Identities=16%  Similarity=0.216  Sum_probs=54.0

Q ss_pred             HHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15658        126 GLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYM  182 (235)
Q Consensus       126 gLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll  182 (235)
                      ++++|++++++|+|+|.+.++++++++||||    +++++++..+++|+++||++++++++
T Consensus         5 ~l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~   65 (66)
T PRK13466          5 ALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5888999999999999999999999999997    78999999999999999999999874

>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit

Probab=99.26  E-value=1.5e-11  Score=98.48  Aligned_cols=82  Identities=18%  Similarity=0.299  Sum_probs=67.6

Q ss_pred             HHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhcc
Q psy15658        120 YLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVKMGNKVLRALWAS  199 (235)
Q Consensus       120 ~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~~~~~~~~~~~~~~~  199 (235)
                      +.++++++++++++++|+|++++++..-+.+-.++||.|.|.++..+++|+++|||||++++++.+.+.++  ..+++++
T Consensus         2 ~~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~~~~k~lI~vi~~g~~gIYGlIia~ii~~~i~~~~--~~s~~~g   79 (108)
T TIGR01100         2 FGVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLKPKS--NYSLYKG   79 (108)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc--ccCHHHH
Confidence            56899999999999999999999996666656666999999999999999999999999999999875432  1244445


Q ss_pred             ccce
Q psy15658        200 SGLY  203 (235)
Q Consensus       200 ~~~~  203 (235)
                      |.++
T Consensus        80 ~~~~   83 (108)
T TIGR01100        80 FIHL   83 (108)
T ss_pred             HHHH
Confidence            4443

The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.

>PRK07558 F0F1 ATP synthase subunit C; Validated

Probab=99.26  E-value=1.3e-11  Score=92.76  Aligned_cols=66  Identities=24%  Similarity=0.394  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHhhhhhchhhhHhhhhhhhcccccccc----ccchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy15658         31 YMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPR----IKTKNLISVIFCEAVAIYGLITAIVLSG   97 (235)
Q Consensus        31 ~~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe----~~~k~lI~~af~ea~~IYGlIiafli~~   97 (235)
                      .....+|+++++ ++++|+++|+|.++.+++++++||||    +++++++..+|.|+.+||++++++++..
T Consensus         4 ~~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lllf   73 (74)
T PRK07558          4 EALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLF   73 (74)
T ss_pred             hHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            356789999999 99999999999999999999999999    6677999999999999999999999764

>PRK13467 F0F1 ATP synthase subunit C; Provisional

Probab=99.25  E-value=2.6e-11  Score=89.35  Aligned_cols=56  Identities=13%  Similarity=0.156  Sum_probs=52.2

Q ss_pred             HHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15658        127 LSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYM  182 (235)
Q Consensus       127 LavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll  182 (235)
                      +++|++++++|+|+|.+.++++++++||||    +++++++..++.|+++||++++++++
T Consensus         6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il   65 (66)
T PRK13467          6 LALALACMGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            556788899999999999999999999997    78899999999999999999999975

>PRK13468 F0F1 ATP synthase subunit C; Provisional

Probab=99.21  E-value=2.9e-11  Score=92.43  Aligned_cols=67  Identities=18%  Similarity=0.313  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccc----hhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658         32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKT----KNLISVIFCEAVAIYGLITAIVLSGQ   98 (235)
Q Consensus        32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~----k~lI~~af~ea~~IYGlIiafli~~k   98 (235)
                      ...++|++++++++++|+++|+|.++.+++++++||||..+    ++++..+++|+.+||++++++++...
T Consensus         7 ~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllfa   77 (82)
T PRK13468          7 VVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLFA   77 (82)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45779999999999999999999999999999999999765    47788999999999999999998765

>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C

Probab=99.20  E-value=3.1e-11  Score=93.05  Aligned_cols=68  Identities=18%  Similarity=0.292  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhHhhhhhhhcccccccccc----chhhHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15658         32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIK----TKNLISVIFCEAVAIYGLITAIVLSGQL   99 (235)
Q Consensus        32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~----~k~lI~~af~ea~~IYGlIiafli~~ki   99 (235)
                      .+.++|++++++++++|+++|+|.++.+++++++||||..    +++++..++.|+.+||++++++++....
T Consensus         8 ~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf~~   79 (86)
T TIGR03322         8 VASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFAN   79 (86)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999975    5588889999999999999999987763

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.

>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c

Probab=99.19  E-value=5e-11  Score=85.69  Aligned_cols=53  Identities=15%  Similarity=0.243  Sum_probs=49.6

Q ss_pred             HhhHhHHHHHHHHHHHHHHhhhCchh----hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15658        132 VNLFCGMAVGIVGSGAALADAANSNL----FVKILIVEIFGSAIGLFGLIVGIYMTS  184 (235)
Q Consensus       132 a~lgsgig~G~~gaaa~~a~A~~Pel----f~k~lI~~a~~EaiaIyGLVva~ll~~  184 (235)
                      +++++|+|+|.++++++++++||||.    ++++++..+++|+++||++++++++++
T Consensus         1 aa~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lllf   57 (58)
T TIGR01260         1 AAIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLF   57 (58)
T ss_pred             CcchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36789999999999999999999975    999999999999999999999999875

This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.

>PRK08482 F0F1 ATP synthase subunit C; Validated

Probab=99.18  E-value=4.6e-11  Score=95.20  Aligned_cols=68  Identities=22%  Similarity=0.449  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccch----hhHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15658         32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTK----NLISVIFCEAVAIYGLITAIVLSGQL   99 (235)
Q Consensus        32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k----~lI~~af~ea~~IYGlIiafli~~ki   99 (235)
                      ...++|++++++++++|+++|+|.++.+++++++||||..++    +++..+++|+.+||++++++++....
T Consensus        30 ~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf~n  101 (105)
T PRK08482         30 SYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALYAN  101 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            457899999999999999999999999999999999997655    89999999999999999999988763

>PRK07874 F0F1 ATP synthase subunit C; Validated

Probab=99.17  E-value=1.2e-10  Score=88.78  Aligned_cols=63  Identities=30%  Similarity=0.413  Sum_probs=54.3

Q ss_pred             cHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15658        115 NIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIY  181 (235)
Q Consensus       115 s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~l  181 (235)
                      +...+...++    +|++++++|+|+|.+.++++++++||||    +++++++..++.|+.+||+++++|+
T Consensus        13 ~~~~~~~~ig----~GlaaiGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l   79 (80)
T PRK07874         13 TTFTGLGAVG----YGLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL   79 (80)
T ss_pred             HHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445555555    4566789999999999999999999997    7889999999999999999999986

>PRK07159 F0F1 ATP synthase subunit C; Validated

Probab=99.17  E-value=4.6e-11  Score=94.41  Aligned_cols=65  Identities=23%  Similarity=0.317  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHhhhhhchhhhHhhhhhhhcccccccccc----chhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658         33 WATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIK----TKNLISVIFCEAVAIYGLITAIVLSGQ   98 (235)
Q Consensus        33 l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~----~k~lI~~af~ea~~IYGlIiafli~~k   98 (235)
                      +.++|+++++ ++++|+++|+|.++.+++++++||||..    +++++..+++|+++||++++++++...
T Consensus        31 ~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lllf~   99 (100)
T PRK07159         31 AAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIFV   99 (100)
T ss_pred             HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4789999999 9999999999999999999999999974    558999999999999999999998653

>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional

Probab=99.13  E-value=1.1e-10  Score=88.30  Aligned_cols=66  Identities=23%  Similarity=0.338  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhHhhhhhhhcccccccccc----chhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658         32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIK----TKNLISVIFCEAVAIYGLITAIVLSGQ   98 (235)
Q Consensus        32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~----~k~lI~~af~ea~~IYGlIiafli~~k   98 (235)
                      ...++|+++++ ++++|+++|+|.+..+.+++++||||..    +++++..++.|+.+||+++++++++..
T Consensus         7 ~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa   76 (77)
T MTH00222          7 AAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFA   76 (77)
T ss_pred             HHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45789999999 9999999999999999999999999965    569999999999999999999998764

>PRK13464 F0F1 ATP synthase subunit C; Provisional

Probab=99.11  E-value=1.5e-10  Score=91.54  Aligned_cols=68  Identities=19%  Similarity=0.356  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhHhhhhhhhcccccccccc----chhhHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15658         32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIK----TKNLISVIFCEAVAIYGLITAIVLSGQL   99 (235)
Q Consensus        32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~----~k~lI~~af~ea~~IYGlIiafli~~ki   99 (235)
                      ....++++++++++++|+++|+|.+.++.+++++||||..    +++++..++.|+.+||++++++++..+.
T Consensus        13 ~~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa~   84 (101)
T PRK13464         13 GLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYAN   84 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5678999999999999999999999999999999999964    5699999999999999999999998874

>PRK05880 F0F1 ATP synthase subunit C; Validated

Probab=99.07  E-value=3.4e-10  Score=86.45  Aligned_cols=67  Identities=25%  Similarity=0.285  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhHhhhhhhhcccccccccc----chhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658         32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIK----TKNLISVIFCEAVAIYGLITAIVLSGQ   98 (235)
Q Consensus        32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~----~k~lI~~af~ea~~IYGlIiafli~~k   98 (235)
                      ...++|++++++++++|+++|+|.+.++++++++||||..    +++++..+++|++.+|++++.+++...
T Consensus         7 ~~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~f~   77 (81)
T PRK05880          7 AGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3467999999999999999999999999999999999964    569999999999999988888876654

>PRK13467 F0F1 ATP synthase subunit C; Provisional

Probab=99.03  E-value=3.7e-10  Score=83.27  Aligned_cols=56  Identities=21%  Similarity=0.418  Sum_probs=50.6

Q ss_pred             HHHHhhhhhchhhhHhhhhhhhcccccccccc----chhhHHHHHHHHHHHHHHHHHHHH
Q psy15658         40 LSVALSVVGAALGIHTVGVSIIGGGVKAPRIK----TKNLISVIFCEAVAIYGLITAIVL   95 (235)
Q Consensus        40 La~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~----~k~lI~~af~ea~~IYGlIiafli   95 (235)
                      ++++++++|+++|+|.+.++++++++||||..    +++++..++.|+.+||++++++++
T Consensus         6 i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il   65 (66)
T PRK13467          6 LALALACMGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44567778999999999999999999999965    559999999999999999999986

>PRK13466 F0F1 ATP synthase subunit C; Provisional

Probab=99.03  E-value=3.3e-10  Score=83.47  Aligned_cols=57  Identities=23%  Similarity=0.404  Sum_probs=52.7

Q ss_pred             HHHHHhhhhhchhhhHhhhhhhhcccccccccc----chhhHHHHHHHHHHHHHHHHHHHH
Q psy15658         39 ALSVALSVVGAALGIHTVGVSIIGGGVKAPRIK----TKNLISVIFCEAVAIYGLITAIVL   95 (235)
Q Consensus        39 gLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~----~k~lI~~af~ea~~IYGlIiafli   95 (235)
                      +++++++++|+++|+|.+..+++++++||||..    +++++..++.|+.+||+++++|++
T Consensus         5 ~l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~   65 (66)
T PRK13466          5 ALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            477889999999999999999999999999965    559999999999999999999985

>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c

Probab=98.97  E-value=5.6e-10  Score=80.28  Aligned_cols=53  Identities=23%  Similarity=0.493  Sum_probs=49.4

Q ss_pred             hhhhchhhhHhhhhhhhccccccccc----cchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy15658         45 SVVGAALGIHTVGVSIIGGGVKAPRI----KTKNLISVIFCEAVAIYGLITAIVLSG   97 (235)
Q Consensus        45 saIGsa~Gig~ag~aa~ga~~~~Pe~----~~k~lI~~af~ea~~IYGlIiafli~~   97 (235)
                      +++|+++|+|.++++++++++||||.    ++++++..+|.|+.+||+++++++++.
T Consensus         1 aa~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lllf   57 (58)
T TIGR01260         1 AAIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLF   57 (58)
T ss_pred             CcchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            47899999999999999999999997    677999999999999999999999764

This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.

>PRK07874 F0F1 ATP synthase subunit C; Validated

Probab=98.93  E-value=2.2e-09  Score=81.80  Aligned_cols=56  Identities=25%  Similarity=0.530  Sum_probs=50.4

Q ss_pred             HHHHHhhhhhchhhhHhhhhhhhcccccccccc----chhhHHHHHHHHHHHHHHHHHHH
Q psy15658         39 ALSVALSVVGAALGIHTVGVSIIGGGVKAPRIK----TKNLISVIFCEAVAIYGLITAIV   94 (235)
Q Consensus        39 gLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~----~k~lI~~af~ea~~IYGlIiafl   94 (235)
                      .++.+++++|+++|+|.+..+++++++||||..    +++++..++.|+.+||+++++|+
T Consensus        20 ~ig~GlaaiGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l   79 (80)
T PRK07874         20 AVGYGLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL   79 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455667779999999999999999999999965    55999999999999999999987

>PRK06649 V-type ATP synthase subunit K; Validated

Probab=98.84  E-value=5.5e-09  Score=87.37  Aligned_cols=65  Identities=14%  Similarity=0.263  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy15658         32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLS   96 (235)
Q Consensus        32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~   96 (235)
                      .+.+++++|++++++..|++.+|+++.+.+++..|+||.++|+++..+|+|+.+||+|++++++.
T Consensus        78 g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~~Et~Al~~lv~s~~~~  142 (143)
T PRK06649         78 PWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGLIETVALFVMVFLMIFK  142 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999999999999999999999999999999999864

>KOG0233|consensus

Probab=98.66  E-value=1.6e-09  Score=93.27  Aligned_cols=87  Identities=23%  Similarity=0.353  Sum_probs=76.8

Q ss_pred             HHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccch---hh-hh
Q psy15658        119 GYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVKMGN---KV-LR  194 (235)
Q Consensus       119 g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~~~~~~---~~-~~  194 (235)
                      -|+.+|.+++++++.++++||+-.+|++-+++-.|.||+.+|.++..+|||+.+|||+|+++++..|....+   .+ .+
T Consensus        41 ~wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAPRI~TKnLisIIfCEavaiyglI~Aivls~kl~~~~~~~~y~~~  120 (196)
T KOG0233|consen   41 MWASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAPRIKTKNLISIIFCEAVAIYGLIMAIVLSTKLENVSSSKAYGAQ  120 (196)
T ss_pred             HHHHhhHHHhhhhhhhhhheeEEEecceeecCcccCCcccccceEEEEeehHHHHHHHHHHHHHHhhhccCCchhhhccc
Confidence            488999999999999999999999999999999999999999999999999999999999999998865443   22 33


Q ss_pred             hhhccccceec
Q psy15658        195 ALWASSGLYST  205 (235)
Q Consensus       195 ~~~~~~~~~~~  205 (235)
                      .++++|.+|+.
T Consensus       121 n~~~gy~lF~a  131 (196)
T KOG0233|consen  121 NLYTGYALFGA  131 (196)
T ss_pred             hhhhhHHHhhh
Confidence            57777777764

>KOG0232|consensus

Probab=98.31  E-value=6.1e-07  Score=75.86  Aligned_cols=68  Identities=31%  Similarity=0.470  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15658         32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQL   99 (235)
Q Consensus        32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~ki   99 (235)
                      .+..+++++.+++++.++++.+++.+.+.+....|||+.+..+++..+|.|++++||||++..+..+.
T Consensus        87 g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQPr~fv~~iLiLif~evlGLygLiva~~l~~~~  154 (156)
T KOG0232|consen   87 GFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQPRLFVGMILILIFAEVLGLYGLIVALALLTVG  154 (156)
T ss_pred             HHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCchhhhhHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            56779999999999999999999999999999999999999999999999999999999999988764

>KOG3025|consensus

Probab=97.77  E-value=7.6e-05  Score=61.00  Aligned_cols=71  Identities=24%  Similarity=0.300  Sum_probs=63.8

Q ss_pred             ccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15658        114 QNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSK  185 (235)
Q Consensus       114 ~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~  185 (235)
                      ..+..+..++|+|.+. ++..++|.++|.+-++-+.+.+|||.    +|...++..++.|+.++|-|.++|++++.
T Consensus        62 ~~i~~aak~igag~at-vgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~aflilfa  136 (137)
T KOG3025|consen   62 RDIDTAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA  136 (137)
T ss_pred             HHHHHHHHHhccchhh-hccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            4466888999999886 78888999999999999999999995    78889999999999999999999998764

>KOG3025|consensus

Probab=96.98  E-value=0.0011  Score=54.33  Aligned_cols=65  Identities=25%  Similarity=0.371  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhHhhhhhhhcccccccccc----chhhHHHHHHHHHHHHHHHHHHHHHh
Q psy15658         32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIK----TKNLISVIFCEAVAIYGLITAIVLSG   97 (235)
Q Consensus        32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~----~k~lI~~af~ea~~IYGlIiafli~~   97 (235)
                      .-.++|++.+. .+..|++.|+|..-.+.+-+.+|+|.+.    ...++..++.|+.++|.+.++|++..
T Consensus        67 aak~igag~at-vgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~aflilf  135 (137)
T KOG3025|consen   67 AAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF  135 (137)
T ss_pred             HHHHhccchhh-hccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            45689999887 6788999999999999999999999864    56899999999999999999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	235
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	9e-33

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A* Length = 156

 Score =  115 bits (289), Expect = 9e-33
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 11/165 (6%)

Query: 21  IGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIF 80
           + + +      ++A L +A +   S +G+A G+   G +        P    + LI  + 
Sbjct: 2   MDYLITQNGGMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLL 61

Query: 81  CEAVAIYGLITAIVLSGQLEQYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAV 140
                +YG + A ++   L               ++  G    GA L +    LF G+A 
Sbjct: 62  PGTQGLYGFVIAFLIFINLGS-----------DMSVVQGLNFLGASLPIAFTGLFSGIAQ 110

Query: 141 GIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSK 185
           G V +      A       K +I         + G ++   +   
Sbjct: 111 GKVAAAGIQILAKKPEHATKGIIFAAMVETYAILGFVISFLLVLN 155

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	235
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	100.0
2xqu_A	82	C15_RING, ATP synthase C chain; membrane protein,	99.69
2wgm_A	89	ATP synthase subunit C, sodium ION specific; F1FO-	99.63
1wu0_A	72	ATP synthase C chain; ATPase, membrane protein, hy	99.59
2x2v_A	69	ATP synthase subunit C; membrane protein, ION tran	99.58
1a91_A	79	F1FO ATPase subunit C; membrane protein, hydrogen	99.55
1wu0_A	72	ATP synthase C chain; ATPase, membrane protein, hy	99.47
2x2v_A	69	ATP synthase subunit C; membrane protein, ION tran	99.46
2xqu_A	82	C15_RING, ATP synthase C chain; membrane protein,	99.45
2xnd_J	72	ATP synthase lipid-binding protein, mitochondrial;	99.43
1a91_A	79	F1FO ATPase subunit C; membrane protein, hydrogen	99.38
2wgm_A	89	ATP synthase subunit C, sodium ION specific; F1FO-	99.36
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	99.36
4f4s_A	76	ATP synthase subunit 9, mitochondrial; C10 ring, F	99.33
2xnd_J	72	ATP synthase lipid-binding protein, mitochondrial;	99.28
4f4s_A	76	ATP synthase subunit 9, mitochondrial; C10 ring, F	99.01

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*

Probab=100.00  E-value=3.6e-36  Score=251.75  Aligned_cols=154  Identities=19%  Similarity=0.344  Sum_probs=146.0

Q ss_pred             HhhHhhhcChHHHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy15658         21 IGWFLQTTTPYMWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGQLE  100 (235)
Q Consensus        21 ~~~~~~~~~p~~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k~lI~~af~ea~~IYGlIiafli~~ki~  100 (235)
                      +.+|+++++|.+++++|++++++++++|++||++++|++++++.+||||+++|++++++|||+|+|||+|+++++..+++
T Consensus         2 ~~~~~~~~~~~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~~~k~li~~~l~e~~~IYGlvva~li~~~l~   81 (156)
T 2bl2_A            2 MDYLITQNGGMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFINLG   81 (156)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHGGGHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            35778888899999999999999999999999999999999999999999999999999999999999999999999874


Q ss_pred             ccccccchhhhhhccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy15658        101 QYNEKSTDQAVISQNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGI  180 (235)
Q Consensus       101 ~~~~~~~~~~~~~~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~  180 (235)
                      .           +.++.+++.++++||++|++++++|++||+++++++++++||||.++|+++..+|+|+++||+|++++
T Consensus        82 ~-----------~~~~~~g~~~igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~~~~~ii~~a~~Ea~ai~glvia~  150 (156)
T 2bl2_A           82 S-----------DMSVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATKGIIFAAMVETYAILGFVISF  150 (156)
T ss_dssp             T-----------TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             c-----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3           25678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhc
Q psy15658        181 YMTSK  185 (235)
Q Consensus       181 ll~~~  185 (235)
                      +++++
T Consensus       151 ll~~~  155 (156)
T 2bl2_A          151 LLVLN  155 (156)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98764

>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A

Probab=99.69  E-value=1.5e-16  Score=120.13  Aligned_cols=74  Identities=20%  Similarity=0.282  Sum_probs=69.9

Q ss_pred             cHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy15658        115 NIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSKVKM  188 (235)
Q Consensus       115 s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~~~~  188 (235)
                      ++..++.++++|+++|++++++|++||+++++++++++||||    +|+++++..+++|+++||+|++++++++.+|+
T Consensus         4 ~~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~~p~   81 (82)
T 2xqu_A            4 NLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFANPF   81 (82)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            467889999999999999999999999999999999999999    57789999999999999999999999998875

>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*

Probab=99.63  E-value=1.4e-15  Score=116.55  Aligned_cols=76  Identities=12%  Similarity=0.254  Sum_probs=71.4

Q ss_pred             ccHHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy15658        114 QNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSKVKMG  189 (235)
Q Consensus       114 ~s~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~~~~~  189 (235)
                      .++.+++.++++|+++ ++++++|++||+++++++++++||||    +|+++++..+++|+++||+|++++++++++|+.
T Consensus         7 ~~~~~~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~p~~   85 (89)
T 2wgm_A            7 KTVVLAASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYANPFV   85 (89)
T ss_dssp             HHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSST
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999 99999999999999999999999999    599999999999999999999999999988875


Q ss_pred             h
Q psy15658        190 N  190 (235)
Q Consensus       190 ~  190 (235)
                      +
T Consensus        86 ~   86 (89)
T 2wgm_A           86 G   86 (89)
T ss_dssp             T
T ss_pred             H
Confidence            4

>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}

Probab=99.59  E-value=2.5e-15  Score=110.89  Aligned_cols=66  Identities=20%  Similarity=0.271  Sum_probs=61.7

Q ss_pred             HHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15658        119 GYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTS  184 (235)
Q Consensus       119 g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~  184 (235)
                      ++.++++|+++|++++++|++||+++++++++++||||    +|+++++..+++|+++||+|++++++++
T Consensus         2 ~~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf   71 (72)
T 1wu0_A            2 SLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLG   71 (72)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36789999999999999999999999999999999999    5666999999999999999999999865

>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}

Probab=99.58  E-value=7.1e-15  Score=107.65  Aligned_cols=62  Identities=16%  Similarity=0.337  Sum_probs=58.5

Q ss_pred             HHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15658        122 MFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMT  183 (235)
Q Consensus       122 ~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~  183 (235)
                      ++++|+++|++++++|++||+++++++++++||||    +|+++++..+++|+++||+|+++++++
T Consensus         3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lll   68 (69)
T 2x2v_A            3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLIL   68 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999999999    555599999999999999999999875

>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A

Probab=99.55  E-value=1.9e-14  Score=107.97  Aligned_cols=66  Identities=23%  Similarity=0.364  Sum_probs=61.7

Q ss_pred             HHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15658        120 YLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSK  185 (235)
Q Consensus       120 ~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~  185 (235)
                      +..+++++++|++++++|++||+++++++++++||||    +|+++++..+++|+++||+|++++++++.
T Consensus         8 m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~   77 (79)
T 1a91_A            8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFA   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3568999999999999999999999999999999998    67789999999999999999999998765

>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}

Probab=99.47  E-value=4.8e-14  Score=104.00  Aligned_cols=65  Identities=26%  Similarity=0.465  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccch----hhHHHHHHHHHHHHHHHHHHHHHh
Q psy15658         33 WATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTK----NLISVIFCEAVAIYGLITAIVLSG   97 (235)
Q Consensus        33 l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k----~lI~~af~ea~~IYGlIiafli~~   97 (235)
                      +.++|++++++++++|+++|+|+++.+++++++||||.++|    +++..+|+|+++||++++++++..
T Consensus         3 ~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf   71 (72)
T 1wu0_A            3 LGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLG   71 (72)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46799999999999999999999999999999999997666    999999999999999999999864

>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}

Probab=99.46  E-value=5.2e-14  Score=103.05  Aligned_cols=62  Identities=24%  Similarity=0.466  Sum_probs=58.7

Q ss_pred             HHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccch----hhHHHHHHHHHHHHHHHHHHHHH
Q psy15658         35 TLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKTK----NLISVIFCEAVAIYGLITAIVLS   96 (235)
Q Consensus        35 ~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~k----~lI~~af~ea~~IYGlIiafli~   96 (235)
                      ++|++++++++++|+++|+|+++.+++++++||||.++|    +++..+|+|+++||+++++|++.
T Consensus         3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lll   68 (69)
T 2x2v_A            3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLIL   68 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999999996655    99999999999999999999975

>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A

Probab=99.45  E-value=1.1e-13  Score=104.49  Aligned_cols=68  Identities=29%  Similarity=0.454  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccc----cchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15658         32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRI----KTKNLISVIFCEAVAIYGLITAIVLSGQL   99 (235)
Q Consensus        32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~----~~k~lI~~af~ea~~IYGlIiafli~~ki   99 (235)
                      .+.++|++++++++++|+++|+|+++.+++++++||||.    ++++++..+|+|+++|||++++|++....
T Consensus         8 ~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~~   79 (82)
T 2xqu_A            8 AASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFAN   79 (82)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            578899999999999999999999999999999999995    56699999999999999999999998764

>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}

Probab=99.43  E-value=2.6e-14  Score=105.51  Aligned_cols=64  Identities=25%  Similarity=0.338  Sum_probs=59.5

Q ss_pred             HHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15658        119 GYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMT  183 (235)
Q Consensus       119 g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~  183 (235)
                      ++.++++||++ ++++++|++||+++++++++++||||    +|+++++..+++|+++||+|+++++++
T Consensus         4 ~~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lll   71 (72)
T 2xnd_J            4 AAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLIL   71 (72)
T ss_dssp             TTTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46678999999 99999999999999999999999997    666889999999999999999999875

>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A

Probab=99.38  E-value=6.1e-13  Score=99.78  Aligned_cols=66  Identities=18%  Similarity=0.341  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccccc----hhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658         33 WATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIKT----KNLISVIFCEAVAIYGLITAIVLSGQ   98 (235)
Q Consensus        33 l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~~----k~lI~~af~ea~~IYGlIiafli~~k   98 (235)
                      +..++++++++++++|+++|+|+++.+++++++||||.++    ++++..+|+|+++|||++++|++...
T Consensus         8 m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~   77 (79)
T 1a91_A            8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFA   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3568899999999999999999999999999999999654    59999999999999999999998764

>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*

Probab=99.36  E-value=7.7e-13  Score=101.25  Aligned_cols=67  Identities=15%  Similarity=0.273  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccc----cchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15658         32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRI----KTKNLISVIFCEAVAIYGLITAIVLSGQL   99 (235)
Q Consensus        32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~----~~k~lI~~af~ea~~IYGlIiafli~~ki   99 (235)
                      .+.++|+++++ ++++|+++|+|+++.+++++++||||.    ++++++..+|+|+++||++++++++..+.
T Consensus        12 ~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~   82 (89)
T 2wgm_A           12 AASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYAN   82 (89)
T ss_dssp             HHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67889999999 999999999999999999999999995    88899999999999999999999998765

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*

Probab=99.36  E-value=1.9e-12  Score=108.16  Aligned_cols=70  Identities=16%  Similarity=0.330  Sum_probs=67.3

Q ss_pred             HHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy15658        118 GGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSNLFVKILIVEIFGSAIGLFGLIVGIYMTSKVK  187 (235)
Q Consensus       118 ~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pelf~k~lI~~a~~EaiaIyGLVva~ll~~~~~  187 (235)
                      ..+.+++++++++++++++++++++++.+++++.+||||+++|+++..+++|+++|||||+++++..+.+
T Consensus        12 ~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~~~k~li~~~l~e~~~IYGlvva~li~~~l~   81 (156)
T 2bl2_A           12 MVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFINLG   81 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHGGGHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4689999999999999999999999999999999999999999999999999999999999999998765

>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*

Probab=99.33  E-value=4.2e-12  Score=94.72  Aligned_cols=69  Identities=23%  Similarity=0.284  Sum_probs=63.8

Q ss_pred             HHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15658        116 IFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSK  185 (235)
Q Consensus       116 ~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~  185 (235)
                      +..+.+++++|+++ ++..++|+|||.+.++.+++++||||    +|+.+++..++.|+.+||+|+++|++++.
T Consensus         3 lv~aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lllFa   75 (76)
T 4f4s_A            3 LVLAAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFG   75 (76)
T ss_dssp             HHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45778899999998 99999999999999999999999995    78899999999999999999999999764

>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}

Probab=99.28  E-value=8.7e-13  Score=97.31  Aligned_cols=63  Identities=25%  Similarity=0.414  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHhhhhhchhhhHhhhhhhhcccccccccc----chhhHHHHHHHHHHHHHHHHHHHHH
Q psy15658         33 WATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIK----TKNLISVIFCEAVAIYGLITAIVLS   96 (235)
Q Consensus        33 l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~----~k~lI~~af~ea~~IYGlIiafli~   96 (235)
                      +.++|+++++ ++++|+++|+|+++.+++++++||||.+    +++++..+|+|+++||++++++++.
T Consensus         5 ~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lll   71 (72)
T 2xnd_J            5 AKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLIL   71 (72)
T ss_dssp             TTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4678899999 9999999999999999999999999955    4689999999999999999999874

>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*

Probab=99.01  E-value=2.6e-10  Score=85.09  Aligned_cols=65  Identities=25%  Similarity=0.447  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhHhhhhhhhcccccccccc----chhhHHHHHHHHHHHHHHHHHHHHHh
Q psy15658         32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRIK----TKNLISVIFCEAVAIYGLITAIVLSG   97 (235)
Q Consensus        32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~~----~k~lI~~af~ea~~IYGlIiafli~~   97 (235)
                      ...++|++++. ++.+|+++|+|.+..+.+.+.+||||..    +.+++..++.|+.+||+|+++|+++.
T Consensus         6 aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lllF   74 (76)
T 4f4s_A            6 AAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLF   74 (76)
T ss_dssp             HHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45689999998 8999999999999999999999999865    55899999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	235
d1c99a_	79	f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escheri	0.001

>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]} Length = 79

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: F1F0 ATP synthase subunit C
family: F1F0 ATP synthase subunit C
domain: F1F0 ATP synthase subunit C
species: Escherichia coli [TaxId: 562]

 Score = 34.2 bits (79), Expect = 0.001
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 114 QNIFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAAN----SNLFVKILIVEIFGS 169
           +N+    L   A + +GL  +   + +GI+G       A        L  +  IV     
Sbjct: 2   ENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVD 61

Query: 170 AIGLFGLIVGIYMT 183
           AI +  + +G+Y+ 
Sbjct: 62  AIPMIAVGLGLYVM 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	235
d1c99a_	79	F1F0 ATP synthase subunit C {Escherichia coli [Tax	99.54
d1c99a_	79	F1F0 ATP synthase subunit C {Escherichia coli [Tax	99.3

>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: F1F0 ATP synthase subunit C
family: F1F0 ATP synthase subunit C
domain: F1F0 ATP synthase subunit C
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=1.7e-14  Score=106.69  Aligned_cols=70  Identities=21%  Similarity=0.326  Sum_probs=66.0

Q ss_pred             HHHHHHHHHhHHHHHHHhhHhHHHHHHHHHHHHHHhhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15658        116 IFGGYLMFGAGLSVGLVNLFCGMAVGIVGSGAALADAANSN----LFVKILIVEIFGSAIGLFGLIVGIYMTSK  185 (235)
Q Consensus       116 ~~~g~~~lgagLavGla~lgsgig~G~~gaaa~~a~A~~Pe----lf~k~lI~~a~~EaiaIyGLVva~ll~~~  185 (235)
                      +..++.++++++++|++++++|+|+|+++++++++++||||    +++++++..++.|+++||++++++++++.
T Consensus         4 ~~~~~~~l~agl~~gl~aiG~giG~G~~~~~ale~~ARqPE~~~~l~~~m~ig~al~Ea~~i~~lvialillFa   77 (79)
T d1c99a_           4 LNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFA   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999995    89999999999999999999999998764

>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: F1F0 ATP synthase subunit C
family: F1F0 ATP synthase subunit C
domain: F1F0 ATP synthase subunit C
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=1.1e-12  Score=96.81  Aligned_cols=67  Identities=19%  Similarity=0.357  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhHhhhhhhhccccccccc----cchhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15658         32 MWATLGIALSVALSVVGAALGIHTVGVSIIGGGVKAPRI----KTKNLISVIFCEAVAIYGLITAIVLSGQ   98 (235)
Q Consensus        32 ~l~~lGagLa~gLsaIGsa~Gig~ag~aa~ga~~~~Pe~----~~k~lI~~af~ea~~IYGlIiafli~~k   98 (235)
                      .+.++|++++++++++|+++|+|.++.+++++++||||.    ++++++..++.|+++||++++++++...
T Consensus         7 ~~~~l~agl~~gl~aiG~giG~G~~~~~ale~~ARqPE~~~~l~~~m~ig~al~Ea~~i~~lvialillFa   77 (79)
T d1c99a_           7 DLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFA   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999999999985    5669999999999999999999998754