Psyllid ID: psy15661
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 217 | ||||||
| 340712239 | 275 | PREDICTED: neuferricin-like isoform 1 [B | 0.958 | 0.756 | 0.457 | 5e-50 | |
| 350413967 | 275 | PREDICTED: neuferricin-like [Bombus impa | 0.958 | 0.756 | 0.453 | 6e-50 | |
| 383857016 | 276 | PREDICTED: neuferricin-like [Megachile r | 0.958 | 0.753 | 0.457 | 6e-50 | |
| 242003600 | 283 | conserved hypothetical protein [Pediculu | 0.981 | 0.752 | 0.437 | 1e-49 | |
| 328787367 | 276 | PREDICTED: neuferricin-like [Apis mellif | 0.958 | 0.753 | 0.443 | 3e-49 | |
| 167736380 | 263 | neuferricin precursor [Mus musculus] gi| | 0.976 | 0.806 | 0.421 | 1e-48 | |
| 56090397 | 263 | neuferricin precursor [Rattus norvegicus | 0.986 | 0.813 | 0.408 | 2e-48 | |
| 410979793 | 266 | PREDICTED: neuferricin-like [Felis catus | 0.976 | 0.796 | 0.419 | 4e-48 | |
| 332022114 | 239 | Cytochrome b5 domain-containing protein | 0.958 | 0.870 | 0.431 | 7e-48 | |
| 111598719 | 263 | Cyb5d2 protein [Mus musculus] | 0.976 | 0.806 | 0.417 | 1e-47 |
| >gi|340712239|ref|XP_003394670.1| PREDICTED: neuferricin-like isoform 1 [Bombus terrestris] gi|340712241|ref|XP_003394671.1| PREDICTED: neuferricin-like isoform 2 [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 98/214 (45%), Positives = 132/214 (61%), Gaps = 6/214 (2%)
Query: 1 MFSKEEIAKYVT-EDKLYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFVSGNFTD 59
+F+ E+ KY +D LY+ ILG +FDVTKG +Y G TYH F GRD + AF++G F D
Sbjct: 60 VFTSTELKKYTNLKDGLYISILGQIFDVTKGAKHYGPGATYHVFTGRDASLAFITGEFND 119
Query: 60 EGLTEDIDDISGTEAIELNNWLDFYRTNYVYEGHLIGRFFNTNGSPTRHWHEFQLKLKEA 119
+GLT+DI +S + LN+W+ FY NY+Y+G L GR++N +GSPT H Q L A
Sbjct: 120 KGLTDDISSLSIHQVKALNDWVQFYNKNYIYKGKLNGRYYNEDGSPTEESHNVQKILINA 179
Query: 120 EADSEEVLQEKLKYPPCNVVWSQDEGTRVWCSTKSGGIERDWTGVPRKLYQA-GAESFRC 178
+ E +K +PPCN+ W D GT VWC+ KSGGIERDW GVPR L+++ ++ +RC
Sbjct: 180 KEKQFEEAHKKKMFPPCNIEWKSDSGTVVWCTKKSGGIERDWIGVPRMLFESPNSKEYRC 239
Query: 179 ACVNLDLSVGSDVINGRQGNLEAYENCDPKATSC 212
ACV LD S +G L Y C +T C
Sbjct: 240 ACVKLD----SKEYEETKGMLREYSQCPKSSTKC 269
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350413967|ref|XP_003490166.1| PREDICTED: neuferricin-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
| >gi|383857016|ref|XP_003704002.1| PREDICTED: neuferricin-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
| >gi|242003600|ref|XP_002422791.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212505649|gb|EEB10053.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
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| >gi|328787367|ref|XP_001120049.2| PREDICTED: neuferricin-like [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|167736380|ref|NP_001020097.2| neuferricin precursor [Mus musculus] gi|81862423|sp|Q5SSH8.1|NEUFC_MOUSE RecName: Full=Neuferricin; AltName: Full=Cytochrome b5 domain-containing protein 2; Flags: Precursor | Back alignment and taxonomy information |
|---|
| >gi|56090397|ref|NP_001007672.1| neuferricin precursor [Rattus norvegicus] gi|81884528|sp|Q6AY62.1|NEUFC_RAT RecName: Full=Neuferricin; AltName: Full=Cytochrome b5 domain-containing protein 2; Flags: Precursor gi|50926250|gb|AAH79177.1| Cytochrome b5 domain containing 2 [Rattus norvegicus] | Back alignment and taxonomy information |
|---|
| >gi|410979793|ref|XP_003996266.1| PREDICTED: neuferricin-like [Felis catus] | Back alignment and taxonomy information |
|---|
| >gi|332022114|gb|EGI62436.1| Cytochrome b5 domain-containing protein 2 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
| >gi|111598719|gb|AAH86682.1| Cyb5d2 protein [Mus musculus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 217 | ||||||
| MGI|MGI:2684848 | 263 | Cyb5d2 "cytochrome b5 domain c | 0.976 | 0.806 | 0.421 | 9.8e-48 | |
| RGD|1359124 | 263 | Cyb5d2 "cytochrome b5 domain c | 0.986 | 0.813 | 0.408 | 1.6e-47 | |
| FB|FBgn0030099 | 287 | CG12056 [Drosophila melanogast | 0.976 | 0.738 | 0.426 | 3e-46 | |
| UNIPROTKB|E2RB87 | 263 | CYB5D2 "Uncharacterized protei | 0.972 | 0.802 | 0.408 | 2.7e-45 | |
| UNIPROTKB|F1RGQ7 | 264 | CYB5D2 "Uncharacterized protei | 0.972 | 0.799 | 0.408 | 4.4e-45 | |
| UNIPROTKB|Q29HF1 | 286 | GA11364 "Neuferricin homolog" | 0.981 | 0.744 | 0.412 | 7.1e-45 | |
| ZFIN|ZDB-GENE-050506-83 | 267 | cyb5d2 "cytochrome b5 domain c | 0.953 | 0.775 | 0.418 | 7.1e-45 | |
| UNIPROTKB|Q8WUJ1 | 264 | CYB5D2 "Neuferricin" [Homo sap | 0.976 | 0.803 | 0.401 | 8.1e-44 | |
| UNIPROTKB|F1NSA5 | 264 | CYB5D2 "Uncharacterized protei | 0.907 | 0.746 | 0.419 | 7.3e-43 | |
| UNIPROTKB|E1BLU0 | 265 | CYB5D2 "Uncharacterized protei | 0.967 | 0.792 | 0.405 | 1.9e-42 |
| MGI|MGI:2684848 Cyb5d2 "cytochrome b5 domain containing 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 94/223 (42%), Positives = 135/223 (60%)
Query: 1 MFSKEEIAKY---VTEDKLYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFVSGNF 57
+F EE+A+Y + LYL +LG V+DV+ G+ +Y+ G Y F GRD +RAFV+G++
Sbjct: 37 LFLPEELARYRGGPGDPGLYLALLGRVYDVSSGRRHYEPGAHYSGFAGRDASRAFVTGDY 96
Query: 58 TDEGLTEDIDDISGTEAIELNNWLDFYRTNYVYEGHLIGRFFNTNGSPTRHWHEFQLKLK 117
++ GL +DI+ +S +E + L+NWL FY NYV+ G L+GRF+ +G PT + + +
Sbjct: 97 SEAGLVDDINGLSSSEILTLHNWLSFYEKNYVFVGRLVGRFYRKDGLPTSELTQVEAMVT 156
Query: 118 EAEADSEEVLQEKLKYPPCNVVWSQDEGTRVWCSTKSGGIERDWTGVPRKLYQAGAESFR 177
+ +E+ +EK K+PPCN WS +G+R+WCS KSGG+ RDW GVPRKLY+ GA+
Sbjct: 157 KGMEANEQEQREKQKFPPCNSEWSSAKGSRLWCSQKSGGVHRDWIGVPRKLYKPGAKEPH 216
Query: 178 CACVNLDLSVGSDVINGRQGN--------LEAYENCDPKATSC 212
C CV N R N LE Y C P AT+C
Sbjct: 217 CVCVRTTGPPSDQQDNPRHSNHGDLDNPNLEEYTGCPPLATTC 259
|
|
| RGD|1359124 Cyb5d2 "cytochrome b5 domain containing 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0030099 CG12056 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RB87 CYB5D2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1RGQ7 CYB5D2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q29HF1 GA11364 "Neuferricin homolog" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-050506-83 cyb5d2 "cytochrome b5 domain containing 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q8WUJ1 CYB5D2 "Neuferricin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NSA5 CYB5D2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BLU0 CYB5D2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 217 | |||
| pfam00173 | 74 | pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid | 1e-09 |
| >gnl|CDD|201057 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-09
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 2 FSKEEIAKYVTEDKLYLVILGHVFDVTKGKNYYKKGET-YHCFVGRDGTRAF 52
F+ EE+ K+ + ++VI G V+DVT+ + GE G+D T AF
Sbjct: 1 FTLEEVKKHNKDGDCWIVINGKVYDVTRFLKDHPGGEDVILSAAGKDATEAF 52
|
This family includes heme binding domains from a diverse range of proteins. This family also includes proteins that bind to steroids. The family includes progesterone receptors. Many members of this subfamily are membrane anchored by an N-terminal transmembrane alpha helix. This family also includes a domain in some chitin synthases. There is no known ligand for this domain in the chitin synthases. Length = 74 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 217 | |||
| KOG1108|consensus | 281 | 100.0 | ||
| KOG1110|consensus | 183 | 100.0 | ||
| PF00173 | 76 | Cyt-b5: Cytochrome b5-like Heme/Steroid binding do | 99.57 | |
| COG4892 | 81 | Predicted heme/steroid binding protein [General fu | 99.4 | |
| KOG0536|consensus | 145 | 99.15 | ||
| KOG0537|consensus | 124 | 99.08 | ||
| COG5274 | 164 | CYB5 Cytochrome b involved in lipid metabolism [En | 98.57 | |
| PLN03199 | 485 | delta6-acyl-lipid desaturase-like protein; Provisi | 98.26 | |
| PLN03198 | 526 | delta6-acyl-lipid desaturase; Provisional | 98.23 | |
| PLN02252 | 888 | nitrate reductase [NADPH] | 98.03 | |
| KOG4232|consensus | 430 | 97.35 | ||
| KOG4576|consensus | 167 | 94.93 |
| >KOG1108|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-87 Score=584.38 Aligned_cols=213 Identities=45% Similarity=0.935 Sum_probs=204.7
Q ss_pred CCCHHHHhcccC---CCcEEEEEcCEEEecccCCccccCCCceeeccCCccchhcccCCCCCCCCCCCCCCCCHHHHHhH
Q psy15661 1 MFSKEEIAKYVT---EDKLYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFVSGNFTDEGLTEDIDDISGTEAIEL 77 (217)
Q Consensus 1 lfT~eEL~~ydG---~~~iylaI~G~VYDVT~g~~~YgpGG~Y~~fAGrDaSraf~tg~f~~~~l~~d~~~Ls~~e~~~L 77 (217)
|||+|||++||| ++||||||+|.|||||+|++|||||++|++||||||||||++|+|++.+|+||+.+|+++||.+|
T Consensus 61 lFtpeeLa~fnGt~e~~piyLaiLGsVfdVs~gk~hYgsG~sYnhFaGRDASrAFvsGdf~e~gl~d~v~gLs~dEllsi 140 (281)
T KOG1108|consen 61 LFTPEELAKFNGTEEGRPIYLAILGSVFDVSRGKKHYGSGCSYNHFAGRDASRAFVSGDFEEPGLADDVLGLSPDELLSI 140 (281)
T ss_pred eeCHHHHhhccCCCCCCceeeeeeceeeeccCCeeeeCCCCCcccccccccchheecccCCCCcchhhhccCCHHHHhhh
Confidence 699999999999 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCceeeeeeccccCCCCCCCCccHHHHHHHHHHHHhhHHHHHHhcCCCCCcceecCCCCceEEecCCCCCc
Q psy15661 78 NNWLDFYRTNYVYEGHLIGRFFNTNGSPTRHWHEFQLKLKEAEADSEEVLQEKLKYPPCNVVWSQDEGTRVWCSTKSGGI 157 (217)
Q Consensus 78 ~~W~~fy~~kY~~VG~Li~~~yd~~G~pt~~~~~~~~~~~~~~~~~~~~~~~~~~~P~CN~~ws~~~G~~vWCs~~SGGi 157 (217)
.+|++||++.|++||+|++||||++|.||++|+++++++++|++.+++|++|+++||||||||||+ |||||||++||||
T Consensus 141 ~dWrsFY~k~Y~~vGrv~gryYds~G~pT~~lt~v~a~~era~e~~k~q~~e~a~fp~CNsewsq~-G~RvWCstkgggv 219 (281)
T KOG1108|consen 141 ADWRSFYQKDYVYVGRVIGRYYDSKGAPTPYLTKVLALLERAREAKKQQEEERARFPPCNSEWSQE-GTRVWCSTKGGGV 219 (281)
T ss_pred hhhhhhhhcccceeeEEeeeeecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhhhcc-CceEEEecCCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred ccccccccCeeecCCCCcceeEEeeCCCCCCCccccCCCC----CceecCCCCcCCCccccc
Q psy15661 158 ERDWTGVPRKLYQAGAESFRCACVNLDLSVGSDVINGRQG----NLEAYENCDPKATSCYWL 215 (217)
Q Consensus 158 ~R~W~GvPRkl~~~g~~~~rCaCv~~~~~~~~~~~~~~~~----~l~~Y~gC~~~a~~C~~~ 215 (217)
||+|+|||||||+||++++|||||+.+...+ ...++|+| ||++|+||+|+|.+|+++
T Consensus 220 er~wigyprkLy~pg~k~frCaCVp~~~~~e-~~~~~nrgdlDh~L~~y~~C~P~a~~C~~~ 280 (281)
T KOG1108|consen 220 ERSWIGYPRKLYSPGNKSFRCACVPDAELDE-IDAGGNRGDLDHMLKPYDNCEPQARECFYR 280 (281)
T ss_pred EEEEeeccccccCCCCCCcceEeccccCCCc-CCCCCCccccccccccCCCCCcccceeeec
Confidence 9999999999999999999999998754433 55666776 899999999999999986
|
|
| >KOG1110|consensus | Back alignment and domain information |
|---|
| >PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts [] | Back alignment and domain information |
|---|
| >COG4892 Predicted heme/steroid binding protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0536|consensus | Back alignment and domain information |
|---|
| >KOG0537|consensus | Back alignment and domain information |
|---|
| >COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism] | Back alignment and domain information |
|---|
| >PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional | Back alignment and domain information |
|---|
| >PLN03198 delta6-acyl-lipid desaturase; Provisional | Back alignment and domain information |
|---|
| >PLN02252 nitrate reductase [NADPH] | Back alignment and domain information |
|---|
| >KOG4232|consensus | Back alignment and domain information |
|---|
| >KOG4576|consensus | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 217 | ||||
| 1j03_A | 102 | Solution Structure Of A Putative Steroid-Binding Pr | 5e-09 | ||
| 1t0g_A | 109 | Hypothetical Protein At2g24940.1 From Arabidopsis T | 6e-09 |
| >pdb|1J03|A Chain A, Solution Structure Of A Putative Steroid-Binding Protein From Arabidopsis Length = 102 | Back alignment and structure |
|
| >pdb|1T0G|A Chain A, Hypothetical Protein At2g24940.1 From Arabidopsis Thaliana Has A Cytochrome B5 Like Fold Length = 109 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 217 | |||
| 1j03_A | 102 | Putative steroid binding protein; alpha and beta, | 6e-23 | |
| 1x3x_A | 82 | Cytochrome B5; hemoprotein, porcine parasitic nama | 5e-05 | |
| 2ibj_A | 88 | Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY dif | 2e-04 | |
| 2keo_A | 112 | Probable E3 ubiquitin-protein ligase HERC2; protei | 3e-04 | |
| 1cyo_A | 93 | Cytochrome B5; electron transport; HET: HEM; 1.50A | 6e-04 | |
| 3ner_A | 92 | Cytochrome B5 type B; heme, electron transport; HE | 7e-04 | |
| 3lf5_A | 88 | Cytochrome B5 reductase 4; NCB5OR, electron transf | 8e-04 |
| >1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A Length = 102 | Back alignment and structure |
|---|
Score = 88.1 bits (218), Expect = 6e-23
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 2 FSKEEIAKYVTEDK---LYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFVSGNFT 58
F+ E++++Y D+ +Y+ I G VFDVT GK++Y G Y F G+D +RA +
Sbjct: 5 FTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKN 64
Query: 59 DEGLTEDIDDISGTEAIELNNWLDFYRTNYVYEGHLI 95
+E ++ ++ ++ E LN+W + Y G ++
Sbjct: 65 EEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVV 101
|
| >1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum} Length = 82 | Back alignment and structure |
|---|
| >2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica} Length = 88 | Back alignment and structure |
|---|
| >2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
| >1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ... Length = 93 | Back alignment and structure |
|---|
| >3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A* Length = 92 | Back alignment and structure |
|---|
| >3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 217 | |||
| 1j03_A | 102 | Putative steroid binding protein; alpha and beta, | 100.0 | |
| 1x3x_A | 82 | Cytochrome B5; hemoprotein, porcine parasitic nama | 99.39 | |
| 1cyo_A | 93 | Cytochrome B5; electron transport; HET: HEM; 1.50A | 99.38 | |
| 1cxy_A | 90 | Cytochrome B5; helix, beta-strand, electron transp | 99.36 | |
| 2ibj_A | 88 | Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY dif | 99.36 | |
| 3ner_A | 92 | Cytochrome B5 type B; heme, electron transport; HE | 99.34 | |
| 3lf5_A | 88 | Cytochrome B5 reductase 4; NCB5OR, electron transf | 99.33 | |
| 1hko_A | 104 | Cytochrome B5; electron transfer protein, heme, el | 99.28 | |
| 2keo_A | 112 | Probable E3 ubiquitin-protein ligase HERC2; protei | 99.22 | |
| 1mj4_A | 82 | Sulfite oxidase; cytochrome B5, heme, oxidoreducta | 99.04 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 98.83 | |
| 1sox_A | 466 | Sulfite oxidase; oxidoreductase, sulfite oxidation | 98.38 |
| >1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=228.72 Aligned_cols=95 Identities=29% Similarity=0.647 Sum_probs=91.5
Q ss_pred CCCHHHHhcccC-C--CcEEEEEcCEEEecccCCccccCCCceeeccCCccchhcccCCCCCCCCCCCCCCCCHHHHHhH
Q psy15661 1 MFSKEEIAKYVT-E--DKLYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFVSGNFTDEGLTEDIDDISGTEAIEL 77 (217)
Q Consensus 1 lfT~eEL~~ydG-~--~~iylaI~G~VYDVT~g~~~YgpGG~Y~~fAGrDaSraf~tg~f~~~~l~~d~~~Ls~~e~~~L 77 (217)
.||++||++||| + ++|||||+|+|||||+++.||||||+|+.|||+|||++|++++|+++.+++|+++|+++|++.|
T Consensus 4 ~~T~~El~~~ng~~~~~~~~vaI~G~VYDVT~~~~~~hPGG~~~~~AG~DaT~~f~~~~~~~~~l~~dl~~L~~~e~~~l 83 (102)
T 1j03_A 4 EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINTL 83 (102)
T ss_dssp CCCHHHHTTCBSCSSSCCBEEEETTEEEECGGGHHHHSSSSTTTTTTTSBCHHHHHHTCCCSSSCCSSCSSCCHHHHHHH
T ss_pred ccCHHHHHHhcCCCCCCCEEEEECCEEEECCCCccccCCCCcccccccchHHHHHHHcCCChhhccCcccCCCHHHHHHH
Confidence 589999999999 3 4899999999999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCceeeeee
Q psy15661 78 NNWLDFYRTNYVYEGHLI 95 (217)
Q Consensus 78 ~~W~~fy~~kY~~VG~Li 95 (217)
++|.+||++||++||+|+
T Consensus 84 ~~W~~~f~~kY~~VG~l~ 101 (102)
T 1j03_A 84 NDWETKFEAKYPVVGRVV 101 (102)
T ss_dssp HHHHHHHHTTSCEEECCC
T ss_pred HHHHHHHhccCCeeeEEe
Confidence 999999999999999997
|
| >1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum} | Back alignment and structure |
|---|
| >1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ... | Back alignment and structure |
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| >1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1 | Back alignment and structure |
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| >2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica} | Back alignment and structure |
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| >3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A* | Back alignment and structure |
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| >3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens} | Back alignment and structure |
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| >1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A* | Back alignment and structure |
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| >2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens} | Back alignment and structure |
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| >1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1 | Back alignment and structure |
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| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
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| >1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A* | Back alignment and structure |
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Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 217 | ||||
| d1t0ga_ | 109 | d.120.1.2 (A:) Putative steroid binding protein AT | 7e-26 | |
| d1kbia2 | 97 | d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal | 1e-06 | |
| d1cyoa_ | 88 | d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [Ta | 2e-06 | |
| d1cxya_ | 81 | d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira | 6e-06 | |
| d1mj4a_ | 80 | d.120.1.1 (A:) Sulfite oxidase, N-terminal domain | 9e-05 | |
| d1euea_ | 86 | d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegic | 1e-04 | |
| d1soxa2 | 91 | d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal dom | 3e-04 |
| >d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 109 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cytochrome b5-like heme/steroid binding domain superfamily: Cytochrome b5-like heme/steroid binding domain family: Steroid-binding domain domain: Putative steroid binding protein AT2G24940 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 94.5 bits (235), Expect = 7e-26
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 2 FSKEEIAKYVTEDK---LYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFVSGNFT 58
F+ E++++Y D+ +Y+ I G VFDVT GK++Y G Y F G+D +RA +
Sbjct: 12 FTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKN 71
Query: 59 DEGLTEDIDDISGTEAIELNNWLDFYRTNYVYEGHLI 95
+E ++ ++ ++ E LN+W + Y G ++
Sbjct: 72 EEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVV 108
|
| >d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 97 | Back information, alignment and structure |
|---|
| >d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]} Length = 88 | Back information, alignment and structure |
|---|
| >d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]} Length = 81 | Back information, alignment and structure |
|---|
| >d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 80 | Back information, alignment and structure |
|---|
| >d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86 | Back information, alignment and structure |
|---|
| >d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
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Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 217 | |||
| d1t0ga_ | 109 | Putative steroid binding protein AT2G24940 {Thale | 100.0 | |
| d1euea_ | 86 | Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 101 | 99.28 | |
| d1cxya_ | 81 | Cytochrome b558 {Ectothiorhodospira vacuolata [Tax | 99.21 | |
| d1cyoa_ | 88 | Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]} | 99.19 | |
| d1mj4a_ | 80 | Sulfite oxidase, N-terminal domain {Human (Homo sa | 99.16 | |
| d1soxa2 | 91 | Sulfite oxidase, N-terminal domain {Chicken (Gallu | 99.14 | |
| d1kbia2 | 97 | Flavocytochrome b2, N-terminal domain {Baker's yea | 99.1 |
| >d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cytochrome b5-like heme/steroid binding domain superfamily: Cytochrome b5-like heme/steroid binding domain family: Steroid-binding domain domain: Putative steroid binding protein AT2G24940 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.2e-38 Score=248.64 Aligned_cols=95 Identities=29% Similarity=0.638 Sum_probs=92.2
Q ss_pred CCCHHHHhcccC---CCcEEEEEcCEEEecccCCccccCCCceeeccCCccchhcccCCCCCCCCCCCCCCCCHHHHHhH
Q psy15661 1 MFSKEEIAKYVT---EDKLYLVILGHVFDVTKGKNYYKKGETYHCFVGRDGTRAFVSGNFTDEGLTEDIDDISGTEAIEL 77 (217)
Q Consensus 1 lfT~eEL~~ydG---~~~iylaI~G~VYDVT~g~~~YgpGG~Y~~fAGrDaSraf~tg~f~~~~l~~d~~~Ls~~e~~~L 77 (217)
.||++||++||| ++||||||+|+|||||+|+.||||||+|+.||||||||+|++++|+++++++|+++|+++|++.|
T Consensus 11 ~fT~eeL~~ydG~~~~~piyvAi~G~VyDVt~~~~~ygpgg~Y~~faG~D~sral~~~~~~~e~~~~d~~~L~~~e~~~L 90 (109)
T d1t0ga_ 11 EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINTL 90 (109)
T ss_dssp EEEHHHHTTCSSCSSSCCCEEEETTEEEECGGGTTTSTTTCTTTTTTTEECHHHHHHTCCCTTTCCSCCTTSCHHHHHHH
T ss_pred hCCHHHHHHcCCCCCCccEEEEECCEEEEccCCcceECCCCcccccccccHHHHHHhcCCChhhcCCcccCCCHHHHHHH
Confidence 389999999999 46899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCceeeeee
Q psy15661 78 NNWLDFYRTNYVYEGHLI 95 (217)
Q Consensus 78 ~~W~~fy~~kY~~VG~Li 95 (217)
++|.++|++|||+||+||
T Consensus 91 ~~W~~~f~~kY~~VG~LV 108 (109)
T d1t0ga_ 91 NDWETKFEAKYPVVGRVV 108 (109)
T ss_dssp HHHHHHHHTTSCEEEEEE
T ss_pred HHHHHHHhcCCCEEEEEe
Confidence 999999999999999998
|
| >d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]} | Back information, alignment and structure |
|---|
| >d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|