Psyllid ID: psy15702

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLEQYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVTEDSLASSLHFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYLEREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVLDDYTRFFSLDLSKVDMSTVPLDQWL
Secondary Structure (PSIPRED)
cccccccccccEEEEccccccccHHHHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHccEEcccEEEEEcccccccccccEEcccccHHHHHHHHccccccccccccEEEEEEccccccccccccEEcccccccccccccEEEEEEEcccccEEEEEEcccccHHHHHcccccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHcccccccccccccHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHccccEEEEccccccccHHHHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHcccEEcccEEEEccccccccccHHEcccccccHHHHHHHcccccccccccccEEEEccccEEEEccccEEEEccccccccccccEEEEEEEcccccEEEEEEccHHccHHHHcHHHHHHHHHHHHHHHHccccEcccccccccccccccccccHHHHHHccHHHcccccccccHHHHHHHHHHccccccccccHccc
Coil and Loop (DISEMBL)
MITPELLRAASLFictgpreqftITELNSLKTYLDEGGSLLIALgeegergsstnINFLLEQygvsvnsdcvvrchfykyfhpkecfigngvlnRGIAEALHrdvtedslasslhfvypygaslnvikpsvpvfstgsascplnrpvvsfyrdktrggkLVVLGsaalfsdqylereENDKMRQIILSFLLtddinlnqidaddadvtdytlvPEIRYTAAQLKSTLMEFQEVLDDYTRFFsldlskvdmstvpldqwl
Flexible Loop (DISEMBL)
mitpellrAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLEQYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVTEDSLASSLHFVYPYGASLNVIKPSVPVFStgsascplnrpVVSFYRDKTRGGKLVVLGSAALFSDQYLEREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVLDDYTRFFsldlskvdmstvpldqwl
Low Complexity Region (SEG)
MITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLEQYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVTEDSLASSLHFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYLEREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVLDDYTRFFSLDLSKVDMSTVPLDQWL
Disordered region (IsUnstruct)
*****LLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLEQYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVTEDSLASSLHFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYLEREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVLDDYTRFFSLDLSKVDM*********
Disordered Region (DISOPRED)
MITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLEQYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVTEDSLASSLHFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYLEREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVLDDYTRFFSLDLSKVDMSTVPLDQWL
Disordered Region (DISEMBL)
MITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLEQYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVTEDSLASSLHFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYLEREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVLDDYTRFFSLDLSKVDMSTVPLDQWL
Disordered Region (DISPRO)
MITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLEQYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVTEDSLASSLHFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYLEREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVLDDYTRFFSLDLSKVDMSTVPLDQWL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLEQYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVTEDSLASSLHFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYLEREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVLDDYTRFFSLDLSKVDMSTVPLDQWL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
Q62559	426	Intraflagellar transport	yes	N/A	0.976	0.593	0.494	5e-68
Q9Y366	437	Intraflagellar transport	yes	N/A	0.969	0.574	0.472	5e-66

>sp|Q62559|IFT52_MOUSE Intraflagellar transport protein 52 homolog OS=Mus musculus GN=Ift52 PE=1 SV=2

 Score =  257 bits (657), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 129/261 (49%), Positives = 174/261 (66%), Gaps = 8/261 (3%)

Query: 2   ITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLE 61
           IT E L    L+I  GPRE+FT  E   LK YLD GG +L+ LGE GE    TNINFLLE
Sbjct: 45  ITSEKLIGVKLWITAGPREKFTAAEFEVLKKYLDSGGDILVMLGEGGESRFDTNINFLLE 104

Query: 62  QYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDV-------TEDSLASSL 114
           +YG+ VN+D VVR  +YKYFHPKE  + +GVLNR I+ A  + V          + A +L
Sbjct: 105 EYGIMVNNDAVVRNVYYKYFHPKEALVSDGVLNREISRAAGKAVPGVIDEENSGNNAQAL 164

Query: 115 HFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRG-GKLVVLGSAALFSDQY 173
            FVYP+GA+L+V+KP+V V STGS   PLNRP+++FY  K +G GKL VLGS  +FSDQY
Sbjct: 165 TFVYPFGATLSVMKPAVAVLSTGSVCFPLNRPILAFYHSKNQGFGKLAVLGSCHMFSDQY 224

Query: 174 LEREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEV 233
           L++EEN K+  ++  +L T DI+LNQIDA+D +++DYT+VP+    + QL+  L E  E 
Sbjct: 225 LDKEENSKIMDVVFQWLTTGDIHLNQIDAEDPEISDYTMVPDTATLSEQLRVCLQEGDEN 284

Query: 234 LDDYTRFFSLDLSKVDMSTVP 254
             D+T  F L + ++D + +P
Sbjct: 285 PRDFTTLFDLSIYQLDTTCLP 305

Mus musculus (taxid: 10090)

>sp|Q9Y366|IFT52_HUMAN Intraflagellar transport protein 52 homolog OS=Homo sapiens GN=IFT52 PE=2 SV=3

 Score =  250 bits (639), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 122/258 (47%), Positives = 171/258 (66%), Gaps = 7/258 (2%)

Query: 2   ITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLE 61
           IT E L    L+I  GPRE+FT  E   LK YLD GG + + LGE GE    TNINFLLE
Sbjct: 45  ITSEKLNGVKLWITAGPREKFTAAEFEILKKYLDTGGDVFVMLGEGGESRFDTNINFLLE 104

Query: 62  QYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDV-------TEDSLASSL 114
           +YG+ VN+D VVR  ++KYFHPKE  + +GVLNR I+ A  + V       +  + A +L
Sbjct: 105 EYGIMVNNDAVVRNVYHKYFHPKEALVSSGVLNREISRAAGKAVPGIIDEESSGNNAQAL 164

Query: 115 HFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYL 174
            FVYP+GA+L+V+KP+V V STGS   PLNRP+++FY  K +GGKL VLGS  +FSDQYL
Sbjct: 165 TFVYPFGATLSVMKPAVAVLSTGSVCFPLNRPILAFYHSKNQGGKLAVLGSCHMFSDQYL 224

Query: 175 EREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVL 234
           ++EEN K+  ++  +L T DI+LNQIDA+D +++DY ++P     + + +  L E  E+ 
Sbjct: 225 DKEENSKIMDVVFQWLTTGDIHLNQIDAEDPEISDYMMLPYTATLSKRNRECLQESDEIP 284

Query: 235 DDYTRFFSLDLSKVDMST 252
            D+T  F L + ++D ++
Sbjct: 285 RDFTTLFDLSIFQLDTTS 302

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
327283221	445	PREDICTED: intraflagellar transport prot	0.976	0.568	0.507	8e-70
443710308	442	hypothetical protein CAPTEDRAFT_159967,	0.976	0.572	0.509	3e-69
405971269	455	Intraflagellar transport protein 52-like	0.972	0.553	0.515	3e-68
296481104	415	TPA: intraflagellar transport 52 homolog	0.976	0.609	0.496	4e-68
84000177	440	intraflagellar transport protein 52 homo	0.976	0.575	0.496	4e-68
148222436	444	intraflagellar transport 52 homolog [Xen	0.972	0.567	0.490	5e-68
345790066	446	PREDICTED: intraflagellar transport prot	0.976	0.567	0.492	1e-67
348510447	434	PREDICTED: intraflagellar transport prot	0.953	0.569	0.513	2e-67
432858876	434	PREDICTED: intraflagellar transport prot	0.976	0.582	0.488	4e-67
344279985	437	PREDICTED: intraflagellar transport prot	0.976	0.578	0.488	4e-67

>gi|327283221|ref|XP_003226340.1| PREDICTED: intraflagellar transport protein 52 homolog [Anolis carolinensis]

 Score =  269 bits (688), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 132/260 (50%), Positives = 180/260 (69%), Gaps = 7/260 (2%)

Query: 2   ITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLE 61
           IT E L    L+I  GPRE+FT  E   LK YL++GG +L+ LGE GE    TNINFLLE
Sbjct: 53  ITSEKLTGVKLWITAGPREKFTAAEFEVLKKYLEDGGDILVMLGEGGESRYDTNINFLLE 112

Query: 62  QYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVT----EDSL---ASSL 114
           +YG+ VN+D VVR  +YKYFHPKE  + NGVLNR I+ A  + V+    EDS    A +L
Sbjct: 113 EYGIMVNNDSVVRNVYYKYFHPKEALVSNGVLNREISRAAGKTVSGLIDEDSSGNDAQAL 172

Query: 115 HFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYL 174
            FVYP+GA+LNV+KP+V V STGS   PLNRP+++FY  K +GGKL VLGS  +F+DQYL
Sbjct: 173 TFVYPFGATLNVMKPAVAVLSTGSVCFPLNRPILAFYHYKNQGGKLAVLGSCHMFTDQYL 232

Query: 175 EREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVL 234
           E+EEN K+ +++  +L TDDI+LNQIDA+D +++DYT++P+I   + +L+  L E  E  
Sbjct: 233 EKEENSKIMEVLFQWLTTDDIHLNQIDAEDPEISDYTMLPDIATLSERLRVCLQEGDENP 292

Query: 235 DDYTRFFSLDLSKVDMSTVP 254
            D+T  F + +  +D + +P
Sbjct: 293 RDFTTLFDMSIYHLDTTALP 312

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|443710308|gb|ELU04562.1| hypothetical protein CAPTEDRAFT_159967, partial [Capitella teleta]

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 131/257 (50%), Positives = 178/257 (69%), Gaps = 4/257 (1%)

Query: 2   ITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLE 61
           IT E L AA +F+ +GPRE+F+ +E +++K Y++ GG++L+ +GE GE   STNINF LE
Sbjct: 47  ITEEKLSAAKVFVTSGPREKFSASEFDAIKKYVEAGGNVLVMMGEGGESKYSTNINFFLE 106

Query: 62  QYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDV----TEDSLASSLHFV 117
           +YG+ VNSD VVR H+YKY+HPKE  I NGVLNR I+ A  + V    ++ + A +L F+
Sbjct: 107 EYGIMVNSDSVVRTHYYKYYHPKEALISNGVLNRAISVAAGKTVGMTDSDSNNAQALTFL 166

Query: 118 YPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYLERE 177
           YPYGA+LNVIKPS  V S+GS S PL+RPV + +  K   GK+ V GS  +FSDQ+L++E
Sbjct: 167 YPYGATLNVIKPSYAVLSSGSVSFPLHRPVCALHPSKYGKGKIAVFGSVHMFSDQFLDKE 226

Query: 178 ENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVLDDY 237
           EN K+  +I +FL TDDI LNQIDA+D +++DY + P+    A Q+KS L E  EV  D 
Sbjct: 227 ENTKIMDVIFNFLTTDDIKLNQIDAEDPEISDYNMQPDTSLLAEQIKSCLQETDEVPRDI 286

Query: 238 TRFFSLDLSKVDMSTVP 254
           T  F   L K+D S VP
Sbjct: 287 TTLFDNLLFKLDNSIVP 303

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|405971269|gb|EKC36115.1| Intraflagellar transport protein 52-like protein [Crassostrea gigas]

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 132/256 (51%), Positives = 180/256 (70%), Gaps = 4/256 (1%)

Query: 2   ITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLE 61
           ITPE L + S+F+  G RE++T +EL S+K Y+D GGS+L+ LGE GE    TNINFLLE
Sbjct: 65  ITPETLSSVSIFVICGSREKYTGSELESIKRYIDGGGSVLVLLGEGGETRFETNINFLLE 124

Query: 62  QYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHR--DVTED-SLASSLHFVY 118
           +YG+ +N+D VVR  +YKYFHPKE  I NGVLNR +++A  +   V ED + A +L F+Y
Sbjct: 125 EYGIMINNDAVVRTSYYKYFHPKEALIANGVLNRAVSQAAGKTFSVEEDGNNAQALSFLY 184

Query: 119 PYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYLEREE 178
           PYGA+LNV+KPS  + STGS S PLNRPV + Y ++   GKLVVLGS  +FSDQY+++EE
Sbjct: 185 PYGATLNVMKPSTALLSTGSVSFPLNRPVCALYENRNH-GKLVVLGSCHMFSDQYIDKEE 243

Query: 179 NDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVLDDYT 238
           N K+  +++  L +D+I LN IDA+D +++DY ++P+I   A QLK+ L E  +V  D T
Sbjct: 244 NSKVLDVLIRTLTSDEIKLNPIDAEDPEISDYNMLPDIAKLAGQLKTCLQESDDVPRDIT 303

Query: 239 RFFSLDLSKVDMSTVP 254
             F   L K+D S VP
Sbjct: 304 MLFDNSLFKLDTSLVP 319

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|296481104|tpg|DAA23219.1| TPA: intraflagellar transport 52 homolog [Bos taurus]

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 129/260 (49%), Positives = 176/260 (67%), Gaps = 7/260 (2%)

Query: 2   ITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLE 61
           ITPE L    L+I  GPRE+FT  E   LK YLD GG +L+ LGE GE    TNINFLLE
Sbjct: 45  ITPEKLIGVKLWITAGPREKFTAAEFEILKKYLDGGGDILVMLGEGGESRFDTNINFLLE 104

Query: 62  QYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDV-------TEDSLASSL 114
           +YG+ VN+D VVR  +YKYFHPKE  + NGVLNR I+ A  + V       +  + A +L
Sbjct: 105 EYGIMVNNDAVVRNVYYKYFHPKEALVSNGVLNREISRAAGKAVPGILDEESSGNNAQAL 164

Query: 115 HFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYL 174
            FVYP+GA+L+V KP+V V STGS   PLNRP+++FY  K +GGKL VLGS  +FSDQYL
Sbjct: 165 TFVYPFGATLSVTKPAVAVLSTGSVCFPLNRPILAFYHSKNQGGKLAVLGSCHMFSDQYL 224

Query: 175 EREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVL 234
           ++EEN K+  ++  +L T+DI+LNQIDA+D +++DY ++P+    + +L+  L E  E  
Sbjct: 225 DKEENSKIMDVVFRWLTTEDIHLNQIDAEDPEISDYMMLPDTAALSERLRVCLQEGDENP 284

Query: 235 DDYTRFFSLDLSKVDMSTVP 254
            D+T  F L L ++D +++P
Sbjct: 285 RDFTSLFDLSLYQLDTTSLP 304

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|84000177|ref|NP_001033190.1| intraflagellar transport protein 52 homolog [Bos taurus] gi|81674809|gb|AAI09961.1| Intraflagellar transport 52 homolog (Chlamydomonas) [Bos taurus] gi|440893253|gb|ELR46095.1| Intraflagellar transport protein 52-like protein [Bos grunniens mutus]

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 129/260 (49%), Positives = 176/260 (67%), Gaps = 7/260 (2%)

Query: 2   ITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLE 61
           ITPE L    L+I  GPRE+FT  E   LK YLD GG +L+ LGE GE    TNINFLLE
Sbjct: 45  ITPEKLIGVKLWITAGPREKFTAAEFEILKKYLDGGGDILVMLGEGGESRFDTNINFLLE 104

Query: 62  QYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDV-------TEDSLASSL 114
           +YG+ VN+D VVR  +YKYFHPKE  + NGVLNR I+ A  + V       +  + A +L
Sbjct: 105 EYGIMVNNDAVVRNVYYKYFHPKEALVSNGVLNREISRAAGKAVPGILDEESSGNNAQAL 164

Query: 115 HFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYL 174
            FVYP+GA+L+V KP+V V STGS   PLNRP+++FY  K +GGKL VLGS  +FSDQYL
Sbjct: 165 TFVYPFGATLSVTKPAVAVLSTGSVCFPLNRPILAFYHSKNQGGKLAVLGSCHMFSDQYL 224

Query: 175 EREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVL 234
           ++EEN K+  ++  +L T+DI+LNQIDA+D +++DY ++P+    + +L+  L E  E  
Sbjct: 225 DKEENSKIMDVVFRWLTTEDIHLNQIDAEDPEISDYMMLPDTAALSERLRVCLQEGDENP 284

Query: 235 DDYTRFFSLDLSKVDMSTVP 254
            D+T  F L L ++D +++P
Sbjct: 285 RDFTSLFDLSLYQLDTTSLP 304

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148222436|ref|NP_001087599.1| intraflagellar transport 52 homolog [Xenopus laevis] gi|51513390|gb|AAH80419.1| MGC86374 protein [Xenopus laevis]

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 127/259 (49%), Positives = 178/259 (68%), Gaps = 7/259 (2%)

Query: 2   ITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLE 61
           IT E L    L+I  GPRE+FT  E   LK +L+ GG +L+ LGE GE    TNINFLLE
Sbjct: 53  ITAEKLVGVKLWITAGPREKFTAAEFEVLKQFLEGGGDILVMLGEGGESKHDTNINFLLE 112

Query: 62  QYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVT----EDSLAS---SL 114
           +YG+ VN+D VVR  +YKYFHPKE  + NGVLNR I+ A  +D++    +DS  S   +L
Sbjct: 113 EYGIMVNNDSVVRNVYYKYFHPKEALVSNGVLNREISRAAGKDMSMIIDDDSTGSNSKAL 172

Query: 115 HFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYL 174
            FVYP+GA+LN++KP++ V STGS   PLNRP+++FY+ K  GGKL V GS  +FSD YL
Sbjct: 173 TFVYPFGATLNIMKPAIAVLSTGSVCFPLNRPIMAFYQSKMHGGKLAVSGSCHMFSDNYL 232

Query: 175 EREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVL 234
           ++EEN K+  +++ +L T DINLNQIDA+D +++DYT++P  +  + QL+  L E  EV 
Sbjct: 233 DKEENAKILDVLMQWLTTTDINLNQIDAEDPEISDYTMLPNTQKLSQQLRVCLQEGDEVP 292

Query: 235 DDYTRFFSLDLSKVDMSTV 253
            D+T  F + + ++D S++
Sbjct: 293 RDFTTLFDMSIYQLDTSSL 311

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345790066|ref|XP_853492.2| PREDICTED: intraflagellar transport protein 52 homolog [Canis lupus familiaris]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 128/260 (49%), Positives = 175/260 (67%), Gaps = 7/260 (2%)

Query: 2   ITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLE 61
           IT E L    L+I  GPRE+FT  E   LK YLD GG +L+ LGE GE    TNINFLLE
Sbjct: 54  ITSEKLIGVKLWITAGPREKFTAAEFEVLKKYLDGGGDILVMLGEGGESRFDTNINFLLE 113

Query: 62  QYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDV-------TEDSLASSL 114
           +YG+ VN+D VVR  +YKYFHPKE  + NGVLNR I+ A  + V       +  + A +L
Sbjct: 114 EYGIMVNNDAVVRNVYYKYFHPKEALVSNGVLNREISRAAGKAVPGIIDEESNGNNAQAL 173

Query: 115 HFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYL 174
            FVYP+GA+L+V+KP+V V STGS   PLNRP+++FY  K +GGKL VLGS  +FSDQYL
Sbjct: 174 TFVYPFGATLSVMKPAVAVLSTGSVCFPLNRPILAFYHSKNQGGKLAVLGSCHMFSDQYL 233

Query: 175 EREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVL 234
           ++EEN K+  ++  +L T DINLNQIDA+D +++DY ++P+    + +L+  L E  E  
Sbjct: 234 DKEENSKIMDVVFQWLTTGDINLNQIDAEDPEISDYMMLPDTATLSERLRVCLQEGDENP 293

Query: 235 DDYTRFFSLDLSKVDMSTVP 254
            D+T  F L + ++D +++P
Sbjct: 294 RDFTTLFDLSIYQLDTTSLP 313

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348510447|ref|XP_003442757.1| PREDICTED: intraflagellar transport protein 52 homolog [Oreochromis niloticus]

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 131/255 (51%), Positives = 178/255 (69%), Gaps = 8/255 (3%)

Query: 7   LRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLEQYGVS 66
           L++  L+I  GPRE+FT +E+ +LK YLD GG++L+ LGE GE    TNINFLLE +GV 
Sbjct: 50  LKSVKLWITAGPRERFTASEMEALKVYLDGGGNILVMLGEGGEMKYDTNINFLLEDFGVM 109

Query: 67  VNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVT---ED----SLASSLHFVYP 119
           VN+D VVR  +YKYFHPKE  + NGVLNR I+ A  + VT   ED    + A +L FVYP
Sbjct: 110 VNNDAVVRNVYYKYFHPKEALVSNGVLNREISRAAGKVVTGIIEDENVGNNAQALTFVYP 169

Query: 120 YGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYLEREEN 179
           YGA+L V+KP+V V STGS   PLNRPV++FY+ K   GKL VLGS  +FSDQY+++EEN
Sbjct: 170 YGATLTVVKPAVAVLSTGSVCFPLNRPVLAFYQGKN-SGKLAVLGSCHMFSDQYIDKEEN 228

Query: 180 DKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVLDDYTR 239
           +K+  ++L +L+TD+I LNQIDA+D ++TDYT++P+    + QL+  L E  E   D+T 
Sbjct: 229 NKIMDVVLQWLMTDNIQLNQIDAEDPEITDYTMLPDTGCLSEQLRVCLQEGDENPRDFTS 288

Query: 240 FFSLDLSKVDMSTVP 254
            F + L  +   T+P
Sbjct: 289 LFDMSLFNLSTDTLP 303

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432858876|ref|XP_004068982.1| PREDICTED: intraflagellar transport protein 52 homolog [Oryzias latipes]

 Score =  260 bits (665), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 127/260 (48%), Positives = 181/260 (69%), Gaps = 7/260 (2%)

Query: 2   ITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLE 61
           ++ E L+   L++  GPRE+F  +EL  LK YLD GG++L+ LGE GE    TNINFLLE
Sbjct: 45  LSEERLKGVKLWVSAGPREKFLASELEVLKHYLDSGGNMLVMLGEGGETKYDTNINFLLE 104

Query: 62  QYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVT----EDSLAS---SL 114
           ++GV VN+D VVR  +YKYFHPKE  + NGVLNR I+ A  + VT    E+++ +   +L
Sbjct: 105 EFGVVVNNDAVVRNTYYKYFHPKEALVSNGVLNREISRAAGKVVTGVIEEENVGNNSQAL 164

Query: 115 HFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYL 174
            FVYPYGA+LNVIKP+  V STGS   PL+RPV++FY+ K   GKL V GS  +FSDQY+
Sbjct: 165 TFVYPYGATLNVIKPAAAVLSTGSVCFPLHRPVLAFYQGKNESGKLAVSGSCHMFSDQYI 224

Query: 175 EREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVL 234
           ++EEN K+  ++L +L+TD+I+LNQIDA+D +++DYT++P+  + + +L+S L E  E  
Sbjct: 225 DKEENSKILDVLLQWLMTDNIHLNQIDAEDPEISDYTMLPDTDWLSKRLRSCLQEGDESP 284

Query: 235 DDYTRFFSLDLSKVDMSTVP 254
            +YT  F + L  +   T+P
Sbjct: 285 RNYTPLFVMPLFSLSTDTLP 304

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344279985|ref|XP_003411766.1| PREDICTED: intraflagellar transport protein 52 homolog [Loxodonta africana]

 Score =  260 bits (665), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 127/260 (48%), Positives = 175/260 (67%), Gaps = 7/260 (2%)

Query: 2   ITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLE 61
           IT E L    L+I  GPRE+FT  E   LK YLD GG +L+ LGE GE    TNINFLLE
Sbjct: 45  ITSEKLIGVKLWITAGPREKFTAAEFEVLKKYLDSGGDILVMLGEGGESRFDTNINFLLE 104

Query: 62  QYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDV-------TEDSLASSL 114
           +YG+ VN+D VVR  +YKYFHPKE  + NGVLNR I+ A  + V       +  + A +L
Sbjct: 105 EYGIMVNNDAVVRNVYYKYFHPKEALVSNGVLNREISRAAGKAVPGIIDEESSGNNAQAL 164

Query: 115 HFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYL 174
            FVYP+GA+L+V+KP+V V STGS   PLNRP+++FY  K +GGKL VLGS  +FSDQYL
Sbjct: 165 TFVYPFGATLSVMKPAVAVLSTGSVCFPLNRPILAFYHSKNQGGKLAVLGSCHMFSDQYL 224

Query: 175 EREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVL 234
           ++EEN K+  ++  +L T DI+LNQIDA+D +++DY ++P+    + +L+  L E  E  
Sbjct: 225 DKEENSKIMDVVFQWLTTGDIHLNQIDAEDPEISDYMMLPDTATLSERLRVCLQEGDENP 284

Query: 235 DDYTRFFSLDLSKVDMSTVP 254
            D+T  F L + ++D +++P
Sbjct: 285 RDFTTLFDLSIYQLDTTSLP 304

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
UNIPROTKB|F6QN63	440	IFT52 "Uncharacterized protein	0.976	0.575	0.503	1.4e-64
RGD|1311004	370	Ift52 "intraflagellar transpor	0.976	0.683	0.505	1.2e-63
MGI|MGI:2387217	426	Ift52 "intraflagellar transpor	0.976	0.593	0.501	3.3e-63
UNIPROTKB|F1SDT5	440	IFT52 "Uncharacterized protein	0.976	0.575	0.496	4.2e-63
ZFIN|ZDB-GENE-040614-3	435	ift52 "intraflagellar transpor	0.972	0.579	0.492	8.8e-63
UNIPROTKB|E1BZM9	437	IFT52 "Uncharacterized protein	0.976	0.578	0.469	1.3e-61
UNIPROTKB|Q9Y366	437	IFT52 "Intraflagellar transpor	0.969	0.574	0.480	2.7e-61
UNIPROTKB|Q946G4	454	BLD1 "Intraflagellar transport	0.969	0.552	0.406	2.3e-48
FB|FBgn0031829	410	osm-6 "osm-6" [Drosophila mela	0.930	0.587	0.352	8.4e-42
WB|WBGene00003886	472	osm-6 [Caenorhabditis elegans	0.945	0.519	0.351	1.6e-38

UNIPROTKB|F6QN63 IFT52 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 131/260 (50%), Positives = 177/260 (68%)

Query:     2 ITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLE 61
             ITPE L    L+I  GPRE+FT  E   LK YLD GG +L+ LGE GE    TNINFLLE
Sbjct:    45 ITPEKLIGVKLWITAGPREKFTAAEFEILKKYLDGGGDILVMLGEGGESRFDTNINFLLE 104

Query:    62 QYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVT----EDSL---ASSL 114
             +YG+ VN+D VVR  +YKYFHPKE  + NGVLNR I+ A  + V     E+S    A +L
Sbjct:   105 EYGIMVNNDAVVRNVYYKYFHPKEALVSNGVLNREISRAAGKAVPGILDEESSGNNAQAL 164

Query:   115 HFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYL 174
              FVYP+GA+L+V KP+V V STGS   PLNRP+++FY  K +GGKL VLGS  +FSDQYL
Sbjct:   165 TFVYPFGATLSVTKPAVAVLSTGSVCFPLNRPILAFYHSKNQGGKLAVLGSCHMFSDQYL 224

Query:   175 EREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVL 234
             ++EEN K+  ++  +L T+DI+LNQIDA+D +++DY ++P+    + +L+  L E  E  
Sbjct:   225 DKEENSKIMDVVFRWLTTEDIHLNQIDAEDPEISDYMMLPDTAALSERLRVCLQEGDENP 284

Query:   235 DDYTRFFSLDLSKVDMSTVP 254
              D+T  F L L ++D +++P
Sbjct:   285 RDFTSLFDLSLYQLDTTSLP 304

GO:0045862 "positive regulation of proteolysis" evidence=IEA

GO:0044292 "dendrite terminus" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001841 "neural tube formation" evidence=IEA

RGD|1311004 Ift52 "intraflagellar transport 52 homolog (Chlamydomonas)" [Rattus norvegicus (taxid:10116)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 132/261 (50%), Positives = 176/261 (67%)

Query:     2 ITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLE 61
             IT E L    L+I  GPRE+FT  E   LK YLD GG +L+ LGE GE    TNINFLLE
Sbjct:    45 ITSEKLIGVKLWITAGPREKFTAAEFEVLKKYLDSGGDILVMLGEGGESRFDTNINFLLE 104

Query:    62 QYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVT-----EDS--LASSL 114
             +YG+ VN+D VVR  +YKYFHPKE  + +GVLNR I+ A  + V      E+S   A +L
Sbjct:   105 EYGIMVNNDAVVRNVYYKYFHPKEALVSDGVLNREISRAAGKAVPGVIDEENSGNNAQAL 164

Query:   115 HFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRG-GKLVVLGSAALFSDQY 173
              FVYPYGA+L+V+KP+V V STGS   PLNRP+++FY  K +G GKL VLGS  +FSDQY
Sbjct:   165 TFVYPYGATLSVMKPAVAVLSTGSVCFPLNRPILAFYHSKNQGFGKLAVLGSCHMFSDQY 224

Query:   174 LEREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEV 233
             L++EEN K+  ++  +L T DI+LNQIDA+D +++DYT+VP+    + QL+  L E  E 
Sbjct:   225 LDKEENSKIMDVVFQWLTTGDIHLNQIDAEDPEISDYTMVPDTATLSEQLRVCLQEGDEN 284

Query:   234 LDDYTRFFSLDLSKVDMSTVP 254
               D+T  F L + ++D + +P
Sbjct:   285 PRDFTTLFDLSIYQLDTTCLP 305

GO:0001841 "neural tube formation" evidence=ISO

GO:0001947 "heart looping" evidence=ISO

GO:0007224 "smoothened signaling pathway" evidence=ISO

GO:0007368 "determination of left/right symmetry" evidence=ISO

GO:0009953 "dorsal/ventral pattern formation" evidence=ISO

GO:0032391 "photoreceptor connecting cilium" evidence=ISO

GO:0042733 "embryonic digit morphogenesis" evidence=ISO

GO:0044292 "dendrite terminus" evidence=ISO

GO:0045862 "positive regulation of proteolysis" evidence=ISO

MGI|MGI:2387217 Ift52 "intraflagellar transport 52" [Mus musculus (taxid:10090)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 131/261 (50%), Positives = 176/261 (67%)

Query:     2 ITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLE 61
             IT E L    L+I  GPRE+FT  E   LK YLD GG +L+ LGE GE    TNINFLLE
Sbjct:    45 ITSEKLIGVKLWITAGPREKFTAAEFEVLKKYLDSGGDILVMLGEGGESRFDTNINFLLE 104

Query:    62 QYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVT-----EDS--LASSL 114
             +YG+ VN+D VVR  +YKYFHPKE  + +GVLNR I+ A  + V      E+S   A +L
Sbjct:   105 EYGIMVNNDAVVRNVYYKYFHPKEALVSDGVLNREISRAAGKAVPGVIDEENSGNNAQAL 164

Query:   115 HFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRG-GKLVVLGSAALFSDQY 173
              FVYP+GA+L+V+KP+V V STGS   PLNRP+++FY  K +G GKL VLGS  +FSDQY
Sbjct:   165 TFVYPFGATLSVMKPAVAVLSTGSVCFPLNRPILAFYHSKNQGFGKLAVLGSCHMFSDQY 224

Query:   174 LEREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEV 233
             L++EEN K+  ++  +L T DI+LNQIDA+D +++DYT+VP+    + QL+  L E  E 
Sbjct:   225 LDKEENSKIMDVVFQWLTTGDIHLNQIDAEDPEISDYTMVPDTATLSEQLRVCLQEGDEN 284

Query:   234 LDDYTRFFSLDLSKVDMSTVP 254
               D+T  F L + ++D + +P
Sbjct:   285 PRDFTTLFDLSIYQLDTTCLP 305

GO:0001841 "neural tube formation" evidence=IMP

GO:0001947 "heart looping" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0007224 "smoothened signaling pathway" evidence=IMP

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

GO:0032391 "photoreceptor connecting cilium" evidence=IDA

GO:0042733 "embryonic digit morphogenesis" evidence=IMP

GO:0044292 "dendrite terminus" evidence=IDA

GO:0045862 "positive regulation of proteolysis" evidence=IMP

UNIPROTKB|F1SDT5 IFT52 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 129/260 (49%), Positives = 174/260 (66%)

Query:     2 ITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLE 61
             IT E L    L+I  GPRE+FT  E   LK YLD GG +L+ LGE GE    TNINFLLE
Sbjct:    45 ITSEKLIGVKLWITAGPREKFTAAEFEVLKKYLDGGGDILVMLGEGGESRFDTNINFLLE 104

Query:    62 QYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVT----EDSL---ASSL 114
             +YG+ VN+D VVR  +YKYFHPKE  + +GVLNR I+ A  + V     E+S    A +L
Sbjct:   105 EYGIMVNNDAVVRNVYYKYFHPKEALVSDGVLNREISRAAGKAVPGIIDEESSGNNAQAL 164

Query:   115 HFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYL 174
              FVYP+GA+LNV+KP+V V STGS   PLNRP+++FY  K +GGKL VLGS  +FSDQYL
Sbjct:   165 TFVYPFGATLNVMKPAVAVLSTGSVCFPLNRPILAFYHSKDQGGKLAVLGSCHMFSDQYL 224

Query:   175 EREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVL 234
             ++EEN K+  ++  +L   DI LNQIDA+D +++DY +VP+    + +L+  L E  E  
Sbjct:   225 DKEENSKIMDVVFQWLTAGDIQLNQIDAEDPEISDYMMVPDTATLSERLRVCLQEGDENP 284

Query:   235 DDYTRFFSLDLSKVDMSTVP 254
              D+T  F L + ++D +++P
Sbjct:   285 RDFTTLFDLSIYQLDTTSLP 304

GO:0045862 "positive regulation of proteolysis" evidence=IEA

GO:0044292 "dendrite terminus" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001841 "neural tube formation" evidence=IEA

ZFIN|ZDB-GENE-040614-3 ift52 "intraflagellar transport protein 52" [Danio rerio (taxid:7955)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 128/260 (49%), Positives = 177/260 (68%)

Query:     2 ITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLE 61
             +T E L+   L+I  GPRE+FT  EL  LK YLD GG+LL+ LGE GE    TNINFLLE
Sbjct:    45 LTLEKLQGVKLWITAGPREKFTAAELEVLKQYLDSGGALLVMLGEGGELKYDTNINFLLE 104

Query:    62 QYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVT----EDSLASS---L 114
             ++G+ VN+D V+R  +YKYFHPKE  + NGVLNR I+ A  + VT    E++  ++   L
Sbjct:   105 EFGIMVNNDAVIRNVYYKYFHPKEALVSNGVLNREISRAAGKVVTGVIDEENTGNNSQAL 164

Query:   115 HFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYL 174
              FVYPYGA+LNV+KP+V + STGS   PLNRPV++F+  K   GKL VLGS  +FSDQYL
Sbjct:   165 TFVYPYGATLNVMKPAVAILSTGSVCFPLNRPVLAFHHSKN-AGKLAVLGSCHMFSDQYL 223

Query:   175 EREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVL 234
             ++EEN ++  ++  +L TD I+LNQIDA+D ++TDY ++P+    + +L+  L E  E  
Sbjct:   224 DKEENSRIMDVVFQWLTTDSIHLNQIDAEDPEITDYMMLPDTGSLSERLRVCLQEGDENP 283

Query:   235 DDYTRFFSLDLSKVDMSTVP 254
              D+T  F + L K+  +T+P
Sbjct:   284 RDFTSLFDMSLLKLHTNTLP 303

GO:0042073 "intraflagellar transport" evidence=IDA

GO:0005930 "axoneme" evidence=IDA

GO:0005932 "microtubule basal body" evidence=IDA

UNIPROTKB|E1BZM9 IFT52 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 122/260 (46%), Positives = 178/260 (68%)

Query:     2 ITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLE 61
             IT E L    L+I  GPRE+F+  E   LK +L++GG++L+ L E GE  S TNINFLLE
Sbjct:    45 ITSEKLFGVKLWITAGPREKFSAAEFLVLKKFLEDGGAILVMLREGGESRSGTNINFLLE 104

Query:    62 QYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVTEDSL-------ASSL 114
             +YG+  N+D VVR  +YKY+HPKE  I +GVLNRGI+EA  + V E +        + +L
Sbjct:   105 EYGIVFNNDAVVRNVYYKYYHPKEALISDGVLNRGISEAARKTVLETTGEDGNGHDSQAL 164

Query:   115 HFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYL 174
              FVYP+GA+LNV++P+V V STGS   PLNRP+++FY+ +++GGK+  LGS  +FSDQYL
Sbjct:   165 TFVYPFGATLNVMRPAVAVLSTGSVCFPLNRPILAFYQHESQGGKMAALGSCHMFSDQYL 224

Query:   175 EREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVL 234
             ++EEN K+  ++  +L T DI+LNQ+D +D +++DYTL+P+    + QL+  L E  E  
Sbjct:   225 DKEENGKIMDVLFQWLTTSDIHLNQMDMEDPEISDYTLLPDTAALSEQLRVCLQEGDENP 284

Query:   235 DDYTRFFSLDLSKVDMSTVP 254
              D+T+ F   L ++D + +P
Sbjct:   285 RDFTKLFDTSLYQLDTTALP 304

GO:0001841 "neural tube formation" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0044292 "dendrite terminus" evidence=IEA

GO:0045862 "positive regulation of proteolysis" evidence=IEA

UNIPROTKB|Q9Y366 IFT52 "Intraflagellar transport protein 52 homolog" [Homo sapiens (taxid:9606)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 124/258 (48%), Positives = 172/258 (66%)

Query:     2 ITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLE 61
             IT E L    L+I  GPRE+FT  E   LK YLD GG + + LGE GE    TNINFLLE
Sbjct:    45 ITSEKLNGVKLWITAGPREKFTAAEFEILKKYLDTGGDVFVMLGEGGESRFDTNINFLLE 104

Query:    62 QYGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVT----EDSL---ASSL 114
             +YG+ VN+D VVR  ++KYFHPKE  + +GVLNR I+ A  + V     E+S    A +L
Sbjct:   105 EYGIMVNNDAVVRNVYHKYFHPKEALVSSGVLNREISRAAGKAVPGIIDEESSGNNAQAL 164

Query:   115 HFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYL 174
              FVYP+GA+L+V+KP+V V STGS   PLNRP+++FY  K +GGKL VLGS  +FSDQYL
Sbjct:   165 TFVYPFGATLSVMKPAVAVLSTGSVCFPLNRPILAFYHSKNQGGKLAVLGSCHMFSDQYL 224

Query:   175 EREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEFQEVL 234
             ++EEN K+  ++  +L T DI+LNQIDA+D +++DY ++P     + + +  L E  E+ 
Sbjct:   225 DKEENSKIMDVVFQWLTTGDIHLNQIDAEDPEISDYMMLPYTATLSKRNRECLQESDEIP 284

Query:   235 DDYTRFFSLDLSKVDMST 252
              D+T  F L + ++D ++
Sbjct:   285 RDFTTLFDLSIFQLDTTS 302

GO:0001841 "neural tube formation" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0044292 "dendrite terminus" evidence=IEA

GO:0045862 "positive regulation of proteolysis" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=ISS

GO:0031514 "motile cilium" evidence=ISS

GO:0030992 "intraflagellar transport particle B" evidence=ISS

UNIPROTKB|Q946G4 BLD1 "Intraflagellar transport protein IFT52" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 108/266 (40%), Positives = 161/266 (60%)

Query:     3 TPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLEQ 62
             T + LR+A + +  GP+E+FT  E++ LK ++  GGS+LI + E GE  + TNIN+ LEQ
Sbjct:    49 TLDTLRSAHILVLGGPKEKFTAPEVDMLKKFVKNGGSILILMSEGGEEKAGTNINYFLEQ 108

Query:    63 YGVSVNSDCVVRCHFYKYFHPKECFIGNGVLNR----GIAEALHRDVTEDSLAS------ 112
             +G+SVN+D VVR   YKY HPKE  I +G+LNR    G  ++L+ +  ++   S      
Sbjct:   109 FGMSVNNDAVVRTTHYKYLHPKEVLISDGILNRAVITGAGKSLNSNDDDEFRVSRGPQAF 168

Query:   113 ---SLHFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALF 169
                 L +V+P+GA+L+V KP+VPV S+G  + P+NRPV + +     G ++ VLGS A+F
Sbjct:   169 DGTGLEYVFPFGATLSVQKPAVPVLSSGKIAYPMNRPVGAVWAQPGYG-RIAVLGSCAMF 227

Query:   170 SDQYLEREENDKMRQIILSFLLTDD-INLNQIDADDADVTDYTLVPEIRYTAAQLKSTLM 228
              D++L++EEN K+      FL     I LN IDA++ DV+D  L+P+    A +LK  L 
Sbjct:   228 DDKWLDKEENSKIMDFFFKFLKPHSKIQLNDIDAEEPDVSDLKLLPDTASLADKLKGCLQ 287

Query:   229 EFQEVLDDYTRFFSLDLSKVDMSTVP 254
             E  +V  D+T  F   L K D   +P
Sbjct:   288 EIDDVPRDWTSLFDDSLFKFDTGLIP 313

GO:0005515 "protein binding" evidence=IPI

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0030992 "intraflagellar transport particle B" evidence=IDA

GO:0031514 "motile cilium" evidence=IDA

FB|FBgn0031829 osm-6 "osm-6" [Drosophila melanogaster (taxid:7227)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 90/255 (35%), Positives = 155/255 (60%)

Query:     5 ELLRAASLFICTGPREQFTITELNSLKTYLD-EGGSLLIALGEEGERGSSTNINFLLEQY 63
             E L    +F+  GP+++FT  E + LK Y++ +GGSL++ LGE GE   +TN+NF LEQY
Sbjct:    22 ERLARVKIFVLAGPQDRFTEDEFDVLKHYVEVQGGSLVVLLGEGGEPEFNTNVNFFLEQY 81

Query:    64 GVSVNSDCVVRCHFYKYFHPKECFIGNGVLNRGI--------AEALHRDVTEDSLASSLH 115
             G+ +N D VVR H+YK FHPKEC +G GV+   +         E ++ D +++     +H
Sbjct:    82 GIYINGDTVVRPHYYKNFHPKECIVGGGVVCESMWRHLLKLDIEKVYYDFSDEKY--KIH 139

Query:   116 FVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKTRGGKLVVLGSAALFSDQYLE 175
             F YPYGA+LNV +P+  + +TG    P NRP+V ++ +  +GGK++ +GS  ++ D+YL+
Sbjct:   140 FQYPYGATLNVSEPANVLLTTGPVVYPFNRPLVGYFTNG-KGGKILAVGSGYIWHDKYLQ 198

Query:   176 REENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEF--QEV 233
              + ND M + ++  L  D+I  + +D +D +++D     +I + A   K+ L++    ++
Sbjct:   199 DKTNDAMFEYLIKLLGGDEITYSHLDFNDVELSDNKHFTDIGFLADMPKACLIDSIGTDM 258

Query:   234 LDDYTRFFSLDLSKV 248
               D+ + F + L ++
Sbjct:   259 PTDFKQMFDMRLCRL 273

GO:0005871 "kinesin complex" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0042384 "cilium assembly" evidence=ISM

WB|WBGene00003886 osm-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 91/259 (35%), Positives = 151/259 (58%)

Query:     7 LRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLEQYGVS 66
             L    + I   P+  F   E+ ++  +++EGGSL+I  GE GER S   +N ++ +YG++
Sbjct:    59 LEDVRMLIIPQPKTSFGTGEIEAIWKFVEEGGSLMILSGEGGERQS---LNEMIAKYGIT 115

Query:    67 VNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVTEDSLASS--LHFVYPYGASL 124
             VN D V+R  F KYF PKE  + NGV+NR IA A  ++V+ +   +S  L F+YPYG +L
Sbjct:   116 VNKDSVIRTVFLKYFDPKEALVANGVINRAIAVAAKKNVSTEQKHNSQALSFIYPYGCTL 175

Query:   125 NVI-KPSVPVFSTGSASCPLNRPVVSFYRDKT----RGGKLVVLGSAALFSDQYLEREEN 179
             +V  + S  V S+GS S P +RPV +F+  K     + G++ V+GS ++F D Y+++EEN
Sbjct:   176 DVNNRMSNVVLSSGSTSFPTSRPVAAFHETKLNEMKKKGRVCVVGSVSMFHDTYIDKEEN 235

Query:   180 DKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLMEF---QEVLDD 236
              K+    + FL+ + + LN IDA + ++ DYT +P+  + + Q+K  + E    Q +  D
Sbjct:   236 GKIFDTFVEFLV-NGLELNTIDAAEPEINDYTNIPDHIHMSQQIKVCMYEGELDQAISSD 294

Query:   237 YTRFFSLDLSKVDMSTVPL 255
             + +     L   ++   P+
Sbjct:   295 FMKIMDTSLHSFNLKHWPM 313


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      259       259   0.00088  114 3  11 22  0.45    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  181 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.06u 0.18s 23.24t   Elapsed:  00:00:01
  Total cpu time:  23.06u 0.18s 23.24t   Elapsed:  00:00:01
  Start:  Thu Aug 15 14:23:33 2013   End:  Thu Aug 15 14:23:34 2013

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0006935 "chemotaxis" evidence=IMP

GO:0050954 "sensory perception of mechanical stimulus" evidence=IMP

GO:0043025 "neuronal cell body" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0060271 "cilium morphogenesis" evidence=IMP

GO:0031513 "nonmotile primary cilium" evidence=IDA

GO:0035869 "ciliary transition zone" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	259
pfam09822	268	pfam09822, ABC_transp_aux, ABC-type uncharacterize	2e-04

>gnl|CDD|220425 pfam09822, ABC_transp_aux, ABC-type uncharacterized transport system

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 3   TPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIAL---------GEEGERGSS 53
             E+   A L +  GP    +  EL +L  YL  GG LL+ L                  
Sbjct: 188 VGEIPDDADLLVIAGPTSDLSEEELYALDQYLMRGGKLLVFLDPVSVDLDSLLNTGGKRD 247

Query: 54  TNINFLLEQYGVSVNSDCVV 73
           +N+  LLE YGV +N   V+
Sbjct: 248 SNLEDLLESYGVRLNPGLVL 267

This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins. Length = 268

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
KOG3861|consensus	438		100.0
TIGR03521	552	GldG gliding-associated putative ABC transporter s	99.95
PF09822	271	ABC_transp_aux: ABC-type uncharacterized transport	99.58
COG3225	538	GldG ABC-type uncharacterized transport system inv	99.58
PF03345	423	DDOST_48kD: Oligosaccharyltransferase 48 kDa subun	99.45
KOG2754|consensus	443		99.33
PF06283	217	ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.	97.22
KOG4266|consensus	1033		97.12
PF14258	70	DUF4350: Domain of unknown function (DUF4350)	97.04
COG5426	254	Uncharacterized membrane protein [Function unknown	95.74
PF09960	585	DUF2194: Uncharacterized protein conserved in bact	95.74
TIGR02336	719	1,3-beta-galactosyl-N-acetylhexosamine phosphoryla	94.87
cd03143	154	A4_beta-galactosidase_middle_domain A4 beta-galact	94.53
cd03142	215	GATase1_ThuA Type 1 glutamine amidotransferase (GA	94.49
PF08532	207	Glyco_hydro_42M: Beta-galactosidase trimerisation	94.26
PF13709	207	DUF4159: Domain of unknown function (DUF4159)	94.05
PF07090	177	DUF1355: Protein of unknown function (DUF1355); In	93.84
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	85.18
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	81.65

>KOG3861|consensus

Probab=100.00  E-value=1.1e-57  Score=394.66  Aligned_cols=256  Identities=43%  Similarity=0.761  Sum_probs=241.8

Q ss_pred             CChhhcCCccEEEEcCCCCCCCHHHHHHHHHHHHcCCcEEEEecCCCCCCCCccHHHHHHHhCcccCCceeeeccCCccc
Q psy15702          2 ITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLEQYGVSVNSDCVVRCHFYKYF   81 (259)
Q Consensus         2 lt~~ip~~advLVI~~P~~~fs~~E~~~L~~fl~~GG~llv~~~~~~~~~~~~nln~LL~~~Gi~~~~~~V~d~~~~~~~   81 (259)
                      |+.+.++++.++|+++|++.|+++|+++|++|++-||.++|+++++||.+..+|+|.+|++|||.+|.|.|+|++|++||
T Consensus        45 i~~e~L~~Vk~~i~agP~~~Ft~~Efevlkkyve~GGsl~vllGEGGE~rf~tnvNf~le~YGI~vN~DtVvR~vy~KyF  124 (438)
T KOG3861|consen   45 IRMERLARVKIFILAGPQDRFTEDEFEVLKKYVEVGGSLVVLLGEGGEPRFNTNVNFFLEQYGIYVNGDTVVRPVYYKYF  124 (438)
T ss_pred             hhhhhhcceeEEEecCcccccchhHHHHHHHHHhcCCeEEEEecCCCCccccccHHHHHHHhCeEecCCceeehhhhhcc
Confidence            56778999999999999999999999999999999999999999999988899999999999999999999999999999


Q ss_pred             CCccccccCccchhhhhhhhcCCCc------cccccCcceEEecccceeeccCCcceEEeeCCcccccCcceEEEEeecC
Q psy15702         82 HPKECFIGNGVLNRGIAEALHRDVT------EDSLASSLHFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRDKT  155 (259)
Q Consensus        82 ~P~~~~i~~~i~~~~i~~~~~~~i~------~~~~~~~~~~~~p~~~~l~v~~~~~pll~ts~~s~p~~~pv~A~~~~~~  155 (259)
                      ||+++++++|++++.+.+.+.+.+.      .+.+++.++|+||||++|+|.+|+..+|+||+.+||++||++|++..+.
T Consensus       125 hPKEalV~~GVvnr~i~raa~K~v~~~v~~~~~~n~qal~F~YPyGaTL~V~~panvvLstGsv~fP~nRP~~af~~~kN  204 (438)
T KOG3861|consen  125 HPKEALVGGGVVNRSIWRAALKLVIEKVYYDFSDNKQALHFQYPYGATLNVSEPANVVLSTGSVVFPFNRPLVAFFTNKN  204 (438)
T ss_pred             ChHHhhhccceeeHHHHHHHHhhhHHHHHhhcccchheEEEecccCceeeccccceeEeccCceeccCCCcceeeeeccC
Confidence            9999999999999999887765322      1356788999999999999999999999999999999999999998655


Q ss_pred             CCcEEEEEecCcccccccccccccHHHHHHHHHhhcCCCCCccccCCCCCCcccccccccHHHHHhhccccccc--cccC
Q psy15702        156 RGGKLVVLGSAALFSDQYLEREENDKMRQIILSFLLTDDINLNQIDADDADVTDYTLVPEIRYTAAQLKSTLME--FQEV  233 (259)
Q Consensus       156 ~~grvvViGs~~~~~d~~~~~~~N~~f~~n~i~wL~~~~~~l~~I~~k~~~~~~~~~v~d~~~~a~~~~~c~~~--~~~~  233 (259)
                      ++||++|+||+.||.|+|++++.|.+++.-+++||.+++..++.|++.++++.+|..+||+.-+|+++|.||||  ++++
T Consensus       205 ~gGki~vvGS~~mfhD~YldkeeN~kifd~~v~~L~~g~i~ln~iDa~dpEisDy~~~pd~~~ls~~~k~Cl~e~i~~~i  284 (438)
T KOG3861|consen  205 KGGKILVVGSGYMFHDKYLDKEENDKIFDYLVKLLGGGEITLNHIDANDPEISDYKHFPDIGFLSDMPKACLIESIGTDI  284 (438)
T ss_pred             cCceEEEeeeeeeechhhccccccchHHHHHHHHhcCCceEeeccccCCCcccccccCcchhhhhhccHHHHhhcccccc
Confidence            77999999999999999999999999999999999998899999999999999999999999999999999999  6899


Q ss_pred             CchhHHhhccccccccCCCCCccc
Q psy15702        234 LDDYTRFFSLDLSKVDMSTVPLDQ  257 (259)
Q Consensus       234 ~~d~~~~~~~~~~~~~~~~~~~~~  257 (259)
                      |.||+++||.+|+++++.+||+|.
T Consensus       285 p~DF~~~fD~sl~~l~~~~~~~vi  308 (438)
T KOG3861|consen  285 PTDFKQMFDMSLCRLSNRLLKDVI  308 (438)
T ss_pred             chHHHHHHHHHHHhhccchhHHHH
Confidence            999999999999999999999875

>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG

Probab=99.95  E-value=2.8e-27  Score=227.93  Aligned_cols=196  Identities=18%  Similarity=0.283  Sum_probs=145.4

Q ss_pred             hhhcC---CccEEEEcCCCCCCCHHHHHHHHHHHHcCCcEEEEecCCC---C-----------CCCCccHHHHHHHhCcc
Q psy15702          4 PELLR---AASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEG---E-----------RGSSTNINFLLEQYGVS   66 (259)
Q Consensus         4 ~~ip~---~advLVI~~P~~~fs~~E~~~L~~fl~~GG~llv~~~~~~---~-----------~~~~~nln~LL~~~Gi~   66 (259)
                      .++|+   +||+|||++|+++|++.|+++|++|+++|||+++++||..   +           ....+||+.||++|||+
T Consensus       226 ~~ip~~l~d~d~LvI~~P~~~ls~~e~~~Ldqfl~~GG~ll~~~dp~~~~~~~~~~~~g~~~~~~~~~~L~~Ll~~~Gi~  305 (552)
T TIGR03521       226 AKTLADLKKFDLIVIAKPTEAFSEREKYILDQYIMNGGKALFLVDAVAMEMDSLYNGDGATFALPRDLNLDDLLFKYGIR  305 (552)
T ss_pred             ccccccccCcCEEEEeCCCccCCHHHHHHHHHHHHcCCeEEEEecCcccccccccccCCccccCCCCCCHHHHHHHhCeE
Confidence            36776   8999999999999999999999999999999999999953   1           01237999999999999


Q ss_pred             cCCceeeeccCCc-------------ccCCccccccCccchhhhhhhhcCCCccccccCcceEEecccceeeccCC---c
Q psy15702         67 VNSDCVVRCHFYK-------------YFHPKECFIGNGVLNRGIAEALHRDVTEDSLASSLHFVYPYGASLNVIKP---S  130 (259)
Q Consensus        67 ~~~~~V~d~~~~~-------------~~~P~~~~i~~~i~~~~i~~~~~~~i~~~~~~~~~~~~~p~~~~l~v~~~---~  130 (259)
                      ++++.|+|.....             |.++...++      +.+..+..|++|....    .+++|++++|...+.   .
T Consensus       306 ~~~~~V~D~~~~~~~~~~g~~g~~~~~~~~~~~~~------p~~~~~~~~piT~~l~----~v~~~~a~~i~~~~~~~~~  375 (552)
T TIGR03521       306 INPDLVEDLNSAPIVLATGNQGNNTQYQPLPWPYY------PQVYSFNKHPITKNLD----AVKFEFASTIDTLKNGIKK  375 (552)
T ss_pred             eCcCeEecCcCCceeeecCCcCCcceecccCcccc------cccccCCCCccccCcc----cEEEeccceeEecCCCeEE
Confidence            9999999855431             111111100      1122234566663332    347788888875432   7


Q ss_pred             ceEEeeCCccccc-----------------------CcceEEEEee--------------------cCCCcEEEEEecCc
Q psy15702        131 VPVFSTGSASCPL-----------------------NRPVVSFYRD--------------------KTRGGKLVVLGSAA  167 (259)
Q Consensus       131 ~pll~ts~~s~p~-----------------------~~pv~A~~~~--------------------~~~~grvvViGs~~  167 (259)
                      +|||+||+.||-.                       ..++++..+|                    +.+.+||||+||++
T Consensus       376 tpLL~TS~~s~~~~~~~~i~~~~~~~~~dp~~~~~g~~~la~~l~g~~~s~f~~~~~~~~~~~~~~~~~~~rvvvvgd~d  455 (552)
T TIGR03521       376 TPLLQTSPYSKIEGTPAQISLSEVTEEPDPESYNLGNLPLAVLLEGSFTSAYKNRILPFEIPFKRDQGKPTKMIVVADGD  455 (552)
T ss_pred             EEeEEeChhhhccCCCccccHHHhhcCCChhHcCCCCeEEEEEEEeccccccCCCCCccccccccccCCCceEEEEechH
Confidence            9999999999921                       1234444332                    12568999999999


Q ss_pred             ccccccccc---------------cccHHHHHHHHHhhcCCCCCccccCCCCCCcccc
Q psy15702        168 LFSDQYLER---------------EENDKMRQIILSFLLTDDINLNQIDADDADVTDY  210 (259)
Q Consensus       168 ~~~d~~~~~---------------~~N~~f~~n~i~wL~~~~~~l~~I~~k~~~~~~~  210 (259)
                      |++|+++..               .+|.+|++|+++||+++ +++++||+|..+.+++
T Consensus       456 ~l~d~~~~~~~~~~~g~~~~~~~~~~N~df~lN~vd~L~~~-~~li~IR~k~~~~r~l  512 (552)
T TIGR03521       456 VIRNQLDNNGKPLELGYDRFTGNLYGNKEFLLNAVNYLLDD-TGLINIRSKEITLPPL  512 (552)
T ss_pred             HhhhhHhhcCCccccccchhccccCccHHHHHHHHHHhcCC-chhhhccccCcccCCC
Confidence            999998832               37999999999999998 8899999999996544

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins

Probab=99.58  E-value=3.5e-15  Score=132.02  Aligned_cols=72  Identities=35%  Similarity=0.580  Sum_probs=65.5

Q ss_pred             ChhhcCCccEEEEcCCCCCCCHHHHHHHHHHHHcCCcEEEEecCCCCC---------CCCccHHHHHHHhCcccCCceee
Q psy15702          3 TPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGER---------GSSTNINFLLEQYGVSVNSDCVV   73 (259)
Q Consensus         3 t~~ip~~advLVI~~P~~~fs~~E~~~L~~fl~~GG~llv~~~~~~~~---------~~~~nln~LL~~~Gi~~~~~~V~   73 (259)
                      +.+||++||+|||++|+++|++.|+++|++||++|||+|+++++....         ...++|+.||++|||+++++.|+
T Consensus       191 ~~~IP~~~d~Lvi~~P~~~ls~~e~~~l~~yl~~GG~ll~~~d~~~~~~~~~~~~~~~~~~~L~~lL~~~Gi~~~~~~V~  270 (271)
T PF09822_consen  191 NEEIPDDADVLVIAGPKTDLSEEELYALDQYLMNGGKLLILLDPFSVELQGLWAGGAQRDSNLNDLLEEYGIRINPGLVV  270 (271)
T ss_pred             ccccCCCCCEEEEECCCCCCCHHHHHHHHHHHHcCCeEEEEECCcccccccccccccccccCHHHHHHHcCCEeCCCEec
Confidence            468999999999999999999999999999999999999999997421         12679999999999999999998


Q ss_pred             e
Q psy15702         74 R   74 (259)
Q Consensus        74 d   74 (259)
                      |
T Consensus       271 D  271 (271)
T PF09822_consen  271 D  271 (271)
T ss_pred             C
Confidence            6

>COG3225 GldG ABC-type uncharacterized transport system involved in gliding motility, auxiliary component [Cell motility and secretion]

Probab=99.58  E-value=1.1e-14  Score=134.75  Aligned_cols=198  Identities=18%  Similarity=0.228  Sum_probs=133.9

Q ss_pred             CChhhcCCccEEEEcCCCCCCCHHHHHHHHHHHHcCCcEEEEecCCCC---------CCCCccHHHHHHHhCcccCCcee
Q psy15702          2 ITPELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGE---------RGSSTNINFLLEQYGVSVNSDCV   72 (259)
Q Consensus         2 lt~~ip~~advLVI~~P~~~fs~~E~~~L~~fl~~GG~llv~~~~~~~---------~~~~~nln~LL~~~Gi~~~~~~V   72 (259)
                      ++.+||.-.+++++.+|.. +.+...++|++|+-+||+++.++++-..         .+..++++.||+.|||+++++.|
T Consensus       222 ~st~ipa~~~~l~~v~p~~-l~E~~~~~iD~fVl~GGkllafV~~ls~~~~~~~~v~pk~sdll~~Lle~wGv~l~p~li  300 (538)
T COG3225         222 ISTRIPALVNVLLIVGPLN-LDEQAAYDIDAFVLAGGKLLAFVSTLSYYLNALYMVGPKSSDLLPDLLESWGVRLNPRLI  300 (538)
T ss_pred             ccccccccccceeEecccc-cchhhhhhhHHHhhcCCeeEEEecchhhccccccccCccccccHHHHHHHhCeecCCCee
Confidence            4567899999999999995 9999999999999999999999988432         34577899999999999999999


Q ss_pred             eeccCC-cc------------cCCccccccCccchhhhhhhhcCCCccccccCcceEEecccceeeccCC----cceEEe
Q psy15702         73 VRCHFY-KY------------FHPKECFIGNGVLNRGIAEALHRDVTEDSLASSLHFVYPYGASLNVIKP----SVPVFS  135 (259)
Q Consensus        73 ~d~~~~-~~------------~~P~~~~i~~~i~~~~i~~~~~~~i~~~~~~~~~~~~~p~~~~l~v~~~----~~pll~  135 (259)
                      +|.+-. ..            .||....+.-..+.+.+.      +.  ..+.--..-+++.+.+.....    ..|+..
T Consensus       301 ld~~~~a~~L~p~~~~~~~r~~~P~w~~i~~~pl~~~vd------~~--~~agiesltL~~~s~le~~~~a~~~flpln~  372 (538)
T COG3225         301 LDDSGFAMSLGPNAPTRYDRGNHPIWLLIPKSPLVRPVD------MP--LQAGIESLTLAWPSSLELSKGASVEFLPLNP  372 (538)
T ss_pred             eecccceeecCCCCcccccccCCCcceecccccccCCCC------cc--cccCceeeeccCchhhcccccceecccCCCh
Confidence            975422 11            234322222111111111      00  000000112334444444322    577888


Q ss_pred             eCCcccccCcceEE------------------------------EEee--c-------CCCcEEEEEecCcccccccccc
Q psy15702        136 TGSASCPLNRPVVS------------------------------FYRD--K-------TRGGKLVVLGSAALFSDQYLER  176 (259)
Q Consensus       136 ts~~s~p~~~pv~A------------------------------~~~~--~-------~~~grvvViGs~~~~~d~~~~~  176 (259)
                      +++.+||+..+++.                              +...  +       ..+..+++++|++++++..+..
T Consensus       373 ss~~~~Pf~~~~~~~~~~~l~~~~~Ps~~~~~~~ak~~gPApsaf~a~p~~~~~g~~~~~ns~~~lv~ds~~~s~~~~~q  452 (538)
T COG3225         373 SSDLSGPFDLPVALTRTISLNANLVPSGKPEELAAKIPGPAPSAFIASPENDQEGKSDRENSPAILVADSDLLSAYMANQ  452 (538)
T ss_pred             hhhccCccchhhhhcccccccCcCCCCCCcccccccCCCCCCCccccCCCCCCCCcccccCCceeecCcccccchhhhhc
Confidence            88888887433211                              1000  1       1244599999999999998765


Q ss_pred             -----cccHHHHHHHHHhhcCCCCCccccCCCCCCccc
Q psy15702        177 -----EENDKMRQIILSFLLTDDINLNQIDADDADVTD  209 (259)
Q Consensus       177 -----~~N~~f~~n~i~wL~~~~~~l~~I~~k~~~~~~  209 (259)
                           .+|.+|+.|+++||.+. +.++.+++|-...++
T Consensus       453 ~~~v~~~N~~fv~N~~d~l~g~-D~fln~~Sr~~~~~p  489 (538)
T COG3225         453 SQQVVAGNFEFVTNIFDYLSGG-DAFLNSKSRLEVRRP  489 (538)
T ss_pred             CCceeeccHHHHHHHHHHHhCC-cceEeeecccccccc
Confidence                 56999999999999998 889999998665444

>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose

Probab=99.45  E-value=7.1e-13  Score=123.14  Aligned_cols=174  Identities=17%  Similarity=0.342  Sum_probs=118.2

Q ss_pred             CccEEEEcCCCC-CCCH-HHHHHHHHHHHcCCcEEEEecCCCCCCCCccHHHHHHHhCcccCCc--eeeeccCCcccCCc
Q psy15702          9 AASLFICTGPRE-QFTI-TELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLEQYGVSVNSD--CVVRCHFYKYFHPK   84 (259)
Q Consensus         9 ~advLVI~~P~~-~fs~-~E~~~L~~fl~~GG~llv~~~~~~~~~~~~nln~LL~~~Gi~~~~~--~V~d~~~~~~~~P~   84 (259)
                      -.|.|||..|+. .|.. -..+.|.+|+++||++|+++++.+   ..+.+..|+.++||.+.+.  .|+|+..+.-....
T Consensus        47 ~YD~LIif~~~~k~~g~~ls~~~ll~Fvd~GgNilv~~s~~~---~~~~ir~~~~E~gi~~~~~~~~viDHf~~~~~~~~  123 (423)
T PF03345_consen   47 LYDHLIIFPPSVKEFGGSLSPKTLLDFVDNGGNILVAGSSDA---IPDSIREFANELGIEFDPKGSKVIDHFNYDSSSDS  123 (423)
T ss_pred             hcceEEEeCCcccccCCCCCHHHHHHHHhCCCcEEEEeCCCc---CcHHHHHHHHHCCeEECCCCCEEEcCCCCcccccc
Confidence            378999999974 3332 358999999999999999999983   3578999999999999865  67787654211010


Q ss_pred             c--c-cc--cCccchhhhhhhhcCCCccccccCcceEEecccceeeccC-C-cceEEeeCCcccccCc---------c--
Q psy15702         85 E--C-FI--GNGVLNRGIAEALHRDVTEDSLASSLHFVYPYGASLNVIK-P-SVPVFSTGSASCPLNR---------P--  146 (259)
Q Consensus        85 ~--~-~i--~~~i~~~~i~~~~~~~i~~~~~~~~~~~~~p~~~~l~v~~-~-~~pll~ts~~s~p~~~---------p--  146 (259)
                      .  . ++  .+..+.+..       +.   ......++| .|.++.+.. | ..|+|+.+.+||..+.         |  
T Consensus       124 ~~h~~i~~~~~~~i~~~~-------~~---~~~~~pilf-~G~g~~l~~n~l~~pIL~a~~Tays~~~~~~~~~~~~~~~  192 (423)
T PF03345_consen  124 EDHTVIVLSSNNLIKSSV-------IV---GFKTKPILF-RGVGHLLDNNPLVFPILRAPSTAYSYDPKEPIEEYDDPWA  192 (423)
T ss_pred             cCcceEEecCCccccCcc-------cc---cCCCCcEEE-EeEEEEecCCCceeeeeccCCceeccccccccccccchhh
Confidence            0  0 00  111111000       00   011123344 777776653 3 8999999999993211         1  


Q ss_pred             ------eEEEEeecCCCcEEEEEecCcccccccccc----------cccHHHHHHHHHhhcCCCCCcc
Q psy15702        147 ------VVSFYRDKTRGGKLVVLGSAALFSDQYLER----------EENDKMRQIILSFLLTDDINLN  198 (259)
Q Consensus       147 ------v~A~~~~~~~~grvvViGs~~~~~d~~~~~----------~~N~~f~~n~i~wL~~~~~~l~  198 (259)
                            +++..|. ++++|++++||.+||+|.++..          .+|++|+.+++.|-++. ...+
T Consensus       193 ~G~q~~LVsa~Qa-rNNARv~~~GS~d~fsd~~f~~~v~~~~~~~~~~N~~f~~~l~~WtF~e-~gvL  258 (423)
T PF03345_consen  193 AGSQISLVSAFQA-RNNARVVFSGSLDMFSDEFFDSKVQKAGKKSKSGNREFAKELSKWTFQE-KGVL  258 (423)
T ss_pred             ccccceEEEEEec-ccCcEEEEEecHHHhccHHHhhhhhhcccccchhHHHHHHHHHHhHHhh-cCeE
Confidence                  2333342 6899999999999999998874          68999999999999986 5443

These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane

>KOG2754|consensus

Probab=99.33  E-value=9.2e-12  Score=111.36  Aligned_cols=169  Identities=20%  Similarity=0.354  Sum_probs=114.4

Q ss_pred             ccEEEEcCCCCC-CCH-HHHHHHHHHHHcCCcEEEEecCCCCCCCCccHHHHHHHhCcccCCc--eeeeccCCcccCCcc
Q psy15702         10 ASLFICTGPREQ-FTI-TELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLEQYGVSVNSD--CVVRCHFYKYFHPKE   85 (259)
Q Consensus        10 advLVI~~P~~~-fs~-~E~~~L~~fl~~GG~llv~~~~~~~~~~~~nln~LL~~~Gi~~~~~--~V~d~~~~~~~~P~~   85 (259)
                      .|-|||.+|..+ |-. -..+.|-+|+++||++|++.++.    ....+..++.++||.++++  .|+|++.+.+..+..
T Consensus        73 yDnlIifap~~e~fgg~is~k~l~~Fvd~gGnvlv~ass~----~~d~iRe~~~E~g~~~~e~~~~ViDH~~~d~s~~sg  148 (443)
T KOG2754|consen   73 YDNLIIFAPSVENFGGSISVKSLAKFVDSGGNVLVAASSA----IGDAIREFASECGIEFDEEGAAVIDHHNYDVSSDSG  148 (443)
T ss_pred             hccEEEecCchhhcCCCCCHHHHHHHHhCCCcEEEEcCCc----ccHHHHHHHHHhCcccCcccceeeeeeeccccCCCC
Confidence            467888888532 222 24678899999999999999985    3578999999999999975  577988776554432


Q ss_pred             c--cc-cCccchhh-hhhhhcCCCccccccCcceEEecccceeecc--CC-cceEEeeCCcccccC-------cce----
Q psy15702         86 C--FI-GNGVLNRG-IAEALHRDVTEDSLASSLHFVYPYGASLNVI--KP-SVPVFSTGSASCPLN-------RPV----  147 (259)
Q Consensus        86 ~--~i-~~~i~~~~-i~~~~~~~i~~~~~~~~~~~~~p~~~~l~v~--~~-~~pll~ts~~s~p~~-------~pv----  147 (259)
                      .  ++ ++..+... |-         ...+..-. ++..|.++...  +| +.|+|+.+++||..+       .|.    
T Consensus       149 dhtli~~~nl~~~~~Iv---------g~~~~~~p-iLfrgig~~l~~~n~lvl~IL~a~~TsYs~np~a~~s~np~a~Gs  218 (443)
T KOG2754|consen  149 DHTLIVADNLLKAPYIV---------GKSKRAAP-ILFRGIGHVLGPTNPLVLPILRASPTSYSYNPEAKVSCNPWAAGS  218 (443)
T ss_pred             CeEEEeecccccCceee---------ccccccCC-eeeecchhhcCCCCcceeeeecCCCcceecCcccccccCcccccc
Confidence            1  11 11111110 10         01111122 44455554443  33 789999999999544       121    


Q ss_pred             ----EEEEeecCCCcEEEEEecCcccccccccc-------------cccHHHHHHHHHhhcCC
Q psy15702        148 ----VSFYRDKTRGGKLVVLGSAALFSDQYLER-------------EENDKMRQIILSFLLTD  193 (259)
Q Consensus       148 ----~A~~~~~~~~grvvViGs~~~~~d~~~~~-------------~~N~~f~~n~i~wL~~~  193 (259)
                          .+..| .++++|||+.||.+||+|+++..             .+|.+|+..+.+|.++.
T Consensus       219 ~~~LV~~lQ-arNNARvv~sGS~d~fsd~~~~~~~~~~~~~~~~~~sgN~~fA~~lskWvF~E  280 (443)
T KOG2754|consen  219 QTLLVSGLQ-ARNNARVVFSGSSDFFSDEFFSSQVQSASSSVQYEQSGNQEFATELSKWVFKE  280 (443)
T ss_pred             ceEEEEeee-ccCCceEEEeccHHhhhcccccccccccCCcchhhccccHHHHHHHHHhhhcc
Confidence                22233 36899999999999999998864             46999999999999986

>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A

Probab=97.22  E-value=0.0046  Score=52.76  Aligned_cols=163  Identities=15%  Similarity=0.145  Sum_probs=80.6

Q ss_pred             CChhhcCCccEEEEcCCCC-CCCHHHHHHHHHHHHcCCcEEEEecCCCCCCCCccHHHHHHHhCcccCCceeeeccCCcc
Q psy15702          2 ITPELLRAASLFICTGPRE-QFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLEQYGVSVNSDCVVRCHFYKY   80 (259)
Q Consensus         2 lt~~ip~~advLVI~~P~~-~fs~~E~~~L~~fl~~GG~llv~~~~~~~~~~~~nln~LL~~~Gi~~~~~~V~d~~~~~~   80 (259)
                      ++.+.++++|+||+..-.. .++++..++|++|+++||.++.+=.....  ...+...+.+=.|-.+...          
T Consensus        45 ~~~~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v~~Ggglv~lH~~~~~--~~~~~~~~~~l~Gg~f~~h----------  112 (217)
T PF06283_consen   45 LTPENLKGYDVVVFYNTGGDELTDEQRAALRDYVENGGGLVGLHGAATD--SFPDWPEYNELLGGYFKGH----------  112 (217)
T ss_dssp             TSHHCHCT-SEEEEE-SSCCGS-HHHHHHHHHHHHTT-EEEEEGGGGGC--CHTT-HHHHHHHS--SEEE----------
T ss_pred             CChhHhcCCCEEEEECCCCCcCCHHHHHHHHHHHHcCCCEEEEcccccc--cchhHHHHHHeeCccccCC----------
Confidence            4566789999999988875 59999999999999999999888412211  1234566666666444221          


Q ss_pred             cCCccccccCccchhhhhhhhcCCCccccccCcceE---EecccceeeccCCcceEEeeCCcccc------cCcceEEEE
Q psy15702         81 FHPKECFIGNGVLNRGIAEALHRDVTEDSLASSLHF---VYPYGASLNVIKPSVPVFSTGSASCP------LNRPVVSFY  151 (259)
Q Consensus        81 ~~P~~~~i~~~i~~~~i~~~~~~~i~~~~~~~~~~~---~~p~~~~l~v~~~~~pll~ts~~s~p------~~~pv~A~~  151 (259)
                        |...   ...+.   .....||++.... .....   .|-.-.  ...+..++|++....++.      ...|++=..
T Consensus       113 --~~~~---~~~v~---~~~~~HPi~~gl~-~~f~~~DE~Y~~~~--~~~~~~~vL~~~~~~~~~~~~~~~~~~Pv~W~~  181 (217)
T PF06283_consen  113 --PPPQ---PFTVR---VEDPDHPITRGLP-ESFTIYDEWYYFLR--DPRPNVTVLLTADESSYDPEGGEGGDHPVAWTR  181 (217)
T ss_dssp             --ECEE---EEEEE---ESSTTSCCCTTS--SEEEEEEEEEES-B--S---CEEEEEEEE--GGG--TTTSSEEEEEEEE
T ss_pred             --CCCc---eEEEE---EcCCCChhhcCCC-CCceEccccccccc--CCCCCEEEEEEEEeccccccccCCCeEEEEEEE
Confidence              1000   00000   0011233331110 00000   111100  111125677777754331      233554433


Q ss_pred             eecCCCcEEEEEecCcccccccccccccHHHHHHHHHhhc
Q psy15702        152 RDKTRGGKLVVLGSAALFSDQYLEREENDKMRQIILSFLL  191 (259)
Q Consensus       152 ~~~~~~grvvViGs~~~~~d~~~~~~~N~~f~~n~i~wL~  191 (259)
                        +.++|||+...=++--.  -+..++=++++.|.+.|.+
T Consensus       182 --~~GkGRvf~~~lGH~~~--~~~~~~~~~ll~ngi~WaA  217 (217)
T PF06283_consen  182 --EYGKGRVFYTTLGHDEE--TWEDPDFRRLLRNGIRWAA  217 (217)
T ss_dssp             --ECTTEEEEEE----TTS--HHHBHHHHHHHHHHHHHCH
T ss_pred             --EeCCeeEEEECCCCChh--hcCCHHHHHHHHHHHHhhC
Confidence              35889999998777322  2345677889999999974

>KOG4266|consensus

Probab=97.12  E-value=0.004  Score=60.13  Aligned_cols=63  Identities=13%  Similarity=0.221  Sum_probs=50.1

Q ss_pred             CCccEEEEcCCCCCCCHHHHHHHHHHHHc-CCcEEEEecCCCC----------------------CCCCccHHHHHHHhC
Q psy15702          8 RAASLFICTGPREQFTITELNSLKTYLDE-GGSLLIALGEEGE----------------------RGSSTNINFLLEQYG   64 (259)
Q Consensus         8 ~~advLVI~~P~~~fs~~E~~~L~~fl~~-GG~llv~~~~~~~----------------------~~~~~nln~LL~~~G   64 (259)
                      ++.-.|++..|.++|-++|+++|++=+.+ |=++.++.|-..-                      ....+.||.||+.||
T Consensus       678 sqYGtLLmVD~E~~yfpEEI~kLr~dV~n~GL~lVvF~dWYNt~vM~K~kFfDeNTRqWWtPdTGGANIPALN~LL~~fg  757 (1033)
T KOG4266|consen  678 SQYGTLLMVDLEDDYFPEEIEKLRDDVINTGLGLVVFADWYNTDVMVKMKFFDENTRQWWTPDTGGANIPALNNLLASFG  757 (1033)
T ss_pred             hHCceEEEEccccccCHHHHHHHHHHHHhcCceEEEEeccccceeeeeeeeeccCcceeccCCCCCcCcHhHHHHHhhhc
Confidence            35667889999999999999999999876 7788887765321                      124578999999999


Q ss_pred             cccCCc
Q psy15702         65 VSVNSD   70 (259)
Q Consensus        65 i~~~~~   70 (259)
                      |.+.+.
T Consensus       758 iaFgD~  763 (1033)
T KOG4266|consen  758 IAFGDK  763 (1033)
T ss_pred             cccccc
Confidence            999754

>PF14258 DUF4350: Domain of unknown function (DUF4350)

Probab=97.04  E-value=0.0013  Score=45.91  Aligned_cols=37  Identities=19%  Similarity=0.424  Sum_probs=32.2

Q ss_pred             cCCccEEEEcCCCCCCCH-HHHHHHHHHHHcCCcEEEE
Q psy15702          7 LRAASLFICTGPREQFTI-TELNSLKTYLDEGGSLLIA   43 (259)
Q Consensus         7 p~~advLVI~~P~~~fs~-~E~~~L~~fl~~GG~llv~   43 (259)
                      +..-..+|+++|...+++ .++++|.+|+++||+++++
T Consensus        32 ~~~~~tll~i~~~~~~~~~~~~~~l~~~v~~G~~lvl~   69 (70)
T PF14258_consen   32 EADDGTLLVIGPDLRLSEPEEAEALLEWVEAGNTLVLA   69 (70)
T ss_pred             CCCCCEEEEEeCCCCCCchHHHHHHHHHHHcCCEEEEe
Confidence            345567889999988996 9999999999999999986

>COG5426 Uncharacterized membrane protein [Function unknown]

Probab=95.74  E-value=0.11  Score=43.65  Aligned_cols=40  Identities=18%  Similarity=0.241  Sum_probs=30.6

Q ss_pred             cCCCcEEEEEec---CcccccccccccccHHHHHHHHHhhcCC
Q psy15702        154 KTRGGKLVVLGS---AALFSDQYLEREENDKMRQIILSFLLTD  193 (259)
Q Consensus       154 ~~~~grvvViGs---~~~~~d~~~~~~~N~~f~~n~i~wL~~~  193 (259)
                      ..+.||.+...|   .++++-+++.=..=.+|+.|++.|++.+
T Consensus       211 ~y~qGrt~~~~SD~~PHW~sp~F~~W~~Y~~lw~n~L~~it~k  253 (254)
T COG5426         211 GYGQGRTAAWTSDCGPHWLSPQFCEWDGYGTLWKNILGWITEK  253 (254)
T ss_pred             ccCCcceEEEeccCCcCcCChhhcccccHHHHHHHHHhHhhcC
Confidence            357788887764   4567777766678899999999999864

>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein

Probab=95.74  E-value=0.06  Score=52.73  Aligned_cols=56  Identities=16%  Similarity=0.259  Sum_probs=39.9

Q ss_pred             hhcC--CccEEEEcCCCCCCCHHHHHHHHHHHHcCCcEEEEecCCCCCCCCccHHHHHHHhCcccCC
Q psy15702          5 ELLR--AASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLEQYGVSVNS   69 (259)
Q Consensus         5 ~ip~--~advLVI~~P~~~fs~~E~~~L~~fl~~GG~llv~~~~~~~~~~~~nln~LL~~~Gi~~~~   69 (259)
                      ..|+  +.+.+||..+..+.-+.  .+|.+|+++||+++++..+..    .+.++.+   +||.-..
T Consensus        97 ~~p~l~~Y~~vII~~~~l~~l~~--~~i~~yV~~GG~vif~~~~~~----~~~~~~I---lGI~~~~  154 (585)
T PF09960_consen   97 SIPSLSDYRGVIILTTDLDPLGN--EAIMNYVENGGTVIFATTPEK----TPWLNFI---LGIRSVG  154 (585)
T ss_pred             cCCcccceeEEEEEeccccccCh--HHHHHHHHcCCeEEEEecccc----Ccchhhe---eeeeecc
Confidence            4454  78878887776433223  999999999999999887763    3456666   7777544

>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase

Probab=94.87  E-value=0.51  Score=46.61  Aligned_cols=157  Identities=14%  Similarity=0.227  Sum_probs=89.7

Q ss_pred             ChhhcCCccEEEEcCCC-CCC-------CHHHHHHHHHHHHcCCcEEEEecCCCCCCCCccHHHHHHHhCcccCCceeee
Q psy15702          3 TPELLRAASLFICTGPR-EQF-------TITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLEQYGVSVNSDCVVR   74 (259)
Q Consensus         3 t~~ip~~advLVI~~P~-~~f-------s~~E~~~L~~fl~~GG~llv~~~~~~~~~~~~nln~LL~~~Gi~~~~~~V~d   74 (259)
                      ...||+|.||+|=+|.. +.|       .++.+.+|++|+.+||.++=+.+|.+......-. .|..-+|+..+...-+.
T Consensus       494 ~~gi~~didViIN~G~a~ta~SGG~~W~d~~~~~aLr~fV~~GGglIGVgDpsa~v~~G~~P-qLadvLGV~~E~f~tL~  572 (719)
T TIGR02336       494 EHGIDSDIDVIINGGDADTAWSGGDVWTNPKLVETVRAWVRGGGGFVGVGEPSAAPQNGRFF-QLADVIGVDKERYQTLS  572 (719)
T ss_pred             hcCCCcCCcEEEecCcccccccCccccCCHHHHHHHHHHHHcCCeEEEEECCccCCcCCCCc-chhhhcceeeeeeeccc
Confidence            45799999999977764 333       3466899999999999999777775432222222 56666799887554332


Q ss_pred             c-cCCcccCCccccccCccchhhhhhhhcCCCccccccCcceEEecccceeeccCCcceEEeeCCcccccCcceEEEEee
Q psy15702         75 C-HFYKYFHPKECFIGNGVLNRGIAEALHRDVTEDSLASSLHFVYPYGASLNVIKPSVPVFSTGSASCPLNRPVVSFYRD  153 (259)
Q Consensus        75 ~-~~~~~~~P~~~~i~~~i~~~~i~~~~~~~i~~~~~~~~~~~~~p~~~~l~v~~~~~pll~ts~~s~p~~~pv~A~~~~  153 (259)
                      . .|..-.+|.. +|..++....++  .+         .+..-+|+.+..       +.||.-+..     .|..+..  
T Consensus       573 ~dky~~~~~~~h-fi~~d~~~~~~d--fG---------e~~~~iy~~~~~-------~~il~~~~G-----~PALTvN--  626 (719)
T TIGR02336       573 VDKYFPPVVPHH-FITADIPVDGID--FG---------EPVLNVYPVNEN-------VTVLRADGG-----QVQLATN--  626 (719)
T ss_pred             cccccccccccc-eeeecccccccc--cC---------CCcCceeecCCc-------eEEEeecCC-----eeEEEee--
Confidence            1 1221112221 111111110111  00         111114444433       335555532     3444433  


Q ss_pred             cCCCcEEEEEecCcccccccccccccHHHHHHHHHhhcCC
Q psy15702        154 KTRGGKLVVLGSAALFSDQYLEREENDKMRQIILSFLLTD  193 (259)
Q Consensus       154 ~~~~grvvViGs~~~~~d~~~~~~~N~~f~~n~i~wL~~~  193 (259)
                      ..++||.+-+|.--       ....|..|+..++.|+...
T Consensus       627 ~YGkGRAyYIAgrp-------~s~fnarLL~RiI~~Agvk  659 (719)
T TIGR02336       627 DYGKGRGVYISGLP-------YSAENARLLERVLFWASHN  659 (719)
T ss_pred             cCCCeEEEEEeecC-------CHHHHHHHHHHHHHHhcCC
Confidence            36889999998421       3357999999999999876

Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.

>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain

Probab=94.53  E-value=0.061  Score=43.17  Aligned_cols=36  Identities=19%  Similarity=0.346  Sum_probs=30.9

Q ss_pred             hcCCccEEEEcCCCCCCCHHHHHHHHHHHHcCCcEEE
Q psy15702          6 LLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLI   42 (259)
Q Consensus         6 ip~~advLVI~~P~~~fs~~E~~~L~~fl~~GG~llv   42 (259)
                      .+++.++||+..... +++++.++|++|+++||++++
T Consensus        50 ~l~~y~~vi~P~~~~-~~~~~~~~l~~~v~~GG~li~   85 (154)
T cd03143          50 DLSGYKLVVLPDLYL-LSDATAAALRAYVENGGTLVA   85 (154)
T ss_pred             CcccCCEEEECchhc-CCHHHHHHHHHHHHCCCEEEE
Confidence            456799999998874 899999999999999996555

A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.

>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA)

Probab=94.49  E-value=0.08  Score=45.40  Aligned_cols=44  Identities=11%  Similarity=0.186  Sum_probs=37.0

Q ss_pred             CChhhcCCccEEEEc-CCC-CCCCHHHHHHHHHHHHcCCcEEEEec
Q psy15702          2 ITPELLRAASLFICT-GPR-EQFTITELNSLKTYLDEGGSLLIALG   45 (259)
Q Consensus         2 lt~~ip~~advLVI~-~P~-~~fs~~E~~~L~~fl~~GG~llv~~~   45 (259)
                      ++.+.++++|+||.. ... ..++++..+++.+|+++||.++.+=+
T Consensus        51 ~~~~~L~~~D~lV~~~~~~~~~l~~eq~~~l~~~V~~GgGlv~lHs   96 (215)
T cd03142          51 LTEEVLAETDVLLWWGHIAHDEVKDEIVERVHRRVLDGMGLIVLHS   96 (215)
T ss_pred             CCHhHHhcCCEEEEeCCCCcCcCCHHHHHHHHHHHHcCCCEEEECC
Confidence            577789999999983 333 57999999999999999999998843

Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.

>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3

Probab=94.26  E-value=0.037  Score=46.99  Aligned_cols=40  Identities=18%  Similarity=0.317  Sum_probs=23.0

Q ss_pred             hcCCccEEEEcCCCCCCCHHHHHHHHHHHHcCCcEEEEecC
Q psy15702          6 LLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGE   46 (259)
Q Consensus         6 ip~~advLVI~~P~~~fs~~E~~~L~~fl~~GG~llv~~~~   46 (259)
                      -++++.+||+.+... +++++.++|++|+++||+|++..-.
T Consensus        54 dL~~Ykllv~P~~~~-l~~~~~~~L~~yV~~GG~li~~~~t   93 (207)
T PF08532_consen   54 DLSGYKLLVLPSLYI-LSPEFAERLRAYVENGGTLILTPRT   93 (207)
T ss_dssp             --TT-SEEEES--SC---HHH---HHHHHT-SS-EEE-TTT
T ss_pred             CcccCcEEEEeeEEE-EChHHHHHHHHHHHCCCEEEEEccc
Confidence            478899999988874 8999999999999999999875444

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.

>PF13709 DUF4159: Domain of unknown function (DUF4159)

Probab=94.05  E-value=0.16  Score=43.22  Aligned_cols=42  Identities=24%  Similarity=0.335  Sum_probs=32.5

Q ss_pred             hhhcCCccEEEEcCC-CCCCCHHHHHHHHHHHHcCCcEEEEec
Q psy15702          4 PELLRAASLFICTGP-REQFTITELNSLKTYLDEGGSLLIALG   45 (259)
Q Consensus         4 ~~ip~~advLVI~~P-~~~fs~~E~~~L~~fl~~GG~llv~~~   45 (259)
                      .+-+.++.+|.+.+. .-.||++|+++|++||++||-|++=..
T Consensus        48 ~~~L~~yP~ly~~g~~~~~~s~~e~~~Lr~Yl~~GGfl~~D~~   90 (207)
T PF13709_consen   48 DDELFFYPFLYWPGHGDFPLSDEEIANLRRYLENGGFLLFDDR   90 (207)
T ss_pred             chhHHhCCEEEEeCCCCCCCCHHHHHHHHHHHHcCCEEEEECC
Confidence            344556777777666 457999999999999999998777444

>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length

Probab=93.84  E-value=0.047  Score=45.37  Aligned_cols=43  Identities=28%  Similarity=0.495  Sum_probs=33.0

Q ss_pred             hhcCCccEEEEcC-CCCCC-----CHHHHHHHHHHHHcCCcEEEEecCC
Q psy15702          5 ELLRAASLFICTG-PREQF-----TITELNSLKTYLDEGGSLLIALGEE   47 (259)
Q Consensus         5 ~ip~~advLVI~~-P~~~f-----s~~E~~~L~~fl~~GG~llv~~~~~   47 (259)
                      +-+...|++|+.. |...+     ++..++.|++|+++||.++++.++.
T Consensus        63 ~~L~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~GGgLlmigG~~  111 (177)
T PF07090_consen   63 EELNRYDVVILSDVPANSLLKSRRSPNQLELLADYVRDGGGLLMIGGPR  111 (177)
T ss_dssp             HHHCT-SEEEEES--HHHHHT----HHHHHHHHHHHHTT-EEEEE-STT
T ss_pred             hHHhcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHhCCEEEEEeChh
Confidence            6688999999887 55667     9999999999999999988887765

The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=85.18  E-value=1.1  Score=36.36  Aligned_cols=43  Identities=19%  Similarity=0.244  Sum_probs=34.7

Q ss_pred             hhhcCCccEEEEcCCCCCCCHHH-------HHHHHHHHHcCCcEEEEecC
Q psy15702          4 PELLRAASLFICTGPREQFTITE-------LNSLKTYLDEGGSLLIALGE   46 (259)
Q Consensus         4 ~~ip~~advLVI~~P~~~fs~~E-------~~~L~~fl~~GG~llv~~~~   46 (259)
                      .+.|++||+|+|.|-+....+.+       .++|++|+++|+.++-..+.
T Consensus         2 ~~~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG   51 (158)
T PF07685_consen    2 EELPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGG   51 (158)
T ss_pred             CCCCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchH
Confidence            57899999999999976555555       47899999999998776543

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=81.65  E-value=1.9  Score=40.00  Aligned_cols=41  Identities=12%  Similarity=0.267  Sum_probs=32.3

Q ss_pred             hcCCccEEEEcCCC-----CCCCHHHHHHHHHHHHcCCcEEEEecC
Q psy15702          6 LLRAASLFICTGPR-----EQFTITELNSLKTYLDEGGSLLIALGE   46 (259)
Q Consensus         6 ip~~advLVI~~P~-----~~fs~~E~~~L~~fl~~GG~llv~~~~   46 (259)
                      -.+++++||+.|-.     +.+...-..+|++|+++||+-|=+...
T Consensus        46 w~~~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAG   91 (367)
T PF09825_consen   46 WQSKCALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAG   91 (367)
T ss_pred             cccCCcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcc
Confidence            35789999999865     346666799999999999997766544

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
2gk3_A	256	Putative cytoplasmic protein; STM3548, structural	98.1
3soz_A	248	ORF 245 protein, cytoplasmic protein STM1381; stru	97.83
3rht_A	259	(gatase1)-like protein; structural genomics, PSI-b	97.75
4e5v_A	281	Putative THUA-like protein; THUA-like proteins, tr	97.48
2zuv_A	759	Lacto-N-biose phosphorylase; beta-alpha-barrel, TI	96.78
1t0b_A	252	THUA-like protein; trehalose metabolism, NCS symme	94.14
3tty_A	675	Beta-GAL, beta-galactosidase; TIM barrel, glycosid	82.52

>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9

Probab=98.10  E-value=4.6e-06  Score=72.03  Aligned_cols=162  Identities=17%  Similarity=0.185  Sum_probs=88.5

Q ss_pred             hhhcCCccEEEEcC-CCCCCC------------HHHHHHHHHHHHcCCcEEEEecCCCCC---CCCccHHH-HHHHhCcc
Q psy15702          4 PELLRAASLFICTG-PREQFT------------ITELNSLKTYLDEGGSLLIALGEEGER---GSSTNINF-LLEQYGVS   66 (259)
Q Consensus         4 ~~ip~~advLVI~~-P~~~fs------------~~E~~~L~~fl~~GG~llv~~~~~~~~---~~~~nln~-LL~~~Gi~   66 (259)
                      .+.++++|++|+.+ +.+.|+            +..+++|++|+++||.++++.++....   ....-.+. |-+-+++.
T Consensus        72 ~~~L~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~GGgll~igG~~s~~~~~g~g~~~~t~l~~vLPv~  151 (256)
T 2gk3_A           72 IDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGGLLMIGGYLSFMGIEAKANYKNTVLAEVLPVI  151 (256)
T ss_dssp             HHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCEEEEECSTTSSSCGGGTTCGGGSTTGGGSSEE
T ss_pred             hhHHhcCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhCCEEEEECChhhhhccccCCccccCChHhhCCee
Confidence            35678999999987 444455            788999999999999999996654210   00111111 23334555


Q ss_pred             cCCce--e-eeccCCcccCCccccccCccchhhhhhhhcCCCccccccCcceEEecccceeeccCCcceEEeeCCccccc
Q psy15702         67 VNSDC--V-VRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVTEDSLASSLHFVYPYGASLNVIKPSVPVFSTGSASCPL  143 (259)
Q Consensus        67 ~~~~~--V-~d~~~~~~~~P~~~~i~~~i~~~~i~~~~~~~i~~~~~~~~~~~~~p~~~~l~v~~~~~pll~ts~~s~p~  143 (259)
                      .....  + ....    +.|...             ...|+++....  ....+..+- .+.....++.|++. +     
T Consensus       152 ~~~~~~~~~~~~~----~~~~~~-------------~~~hpi~~~l~--~~p~~~~~~-~~~~~~~a~vl~~~-~-----  205 (256)
T 2gk3_A          152 MLDGDDRVEKPEG----ICAEAV-------------SPEHPVVNGFS--DYPVFLGYN-QAVARDDADVVLTI-N-----  205 (256)
T ss_dssp             ECSSCCEEEEEEE----EEEEES-------------STTSTTTTTCC--SCCEEEEEE-CEEECTTCEEEEEE-T-----
T ss_pred             eccCccccccCCC----ceeeee-------------cCCCchhcccc--cCCccccEE-EeeeCCCCEEEEEe-C-----
Confidence            53211  1 0000    000000             01233331111  111122111 12223336667766 2     


Q ss_pred             CcceEEEEeecCCCcEEEEEecCcc--ccc-ccccccccHHHHHHHHHhhcCC
Q psy15702        144 NRPVVSFYRDKTRGGKLVVLGSAAL--FSD-QYLEREENDKMRQIILSFLLTD  193 (259)
Q Consensus       144 ~~pv~A~~~~~~~~grvvViGs~~~--~~d-~~~~~~~N~~f~~n~i~wL~~~  193 (259)
                      ..|+.|..+  .++||++++++...  ... .|.....+..|+.+++.||+++
T Consensus       206 ~~PlLa~~~--~G~GRv~~l~sd~~~~W~~~~~~~~~~~~~l~~~~v~wl~~~  256 (256)
T 2gk3_A          206 NDPLLVFGE--YQQGKTACFMSDCSPHWGTQQFMSWPFYTDLWVNTLQFIARK  256 (256)
T ss_dssp             TEEEEEEEE--ETTEEEEEECSCSSTTTBCHHHHTCTTHHHHHHHHHHHHSCC
T ss_pred             CCcEEEEec--cCCcEEEEEccCCccccccccccCCchHHHHHHHHHHHHhcC
Confidence            247877766  48899999986432  112 3444578999999999999863

>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}

Probab=97.83  E-value=8.3e-05  Score=63.88  Aligned_cols=163  Identities=19%  Similarity=0.195  Sum_probs=90.5

Q ss_pred             ChhhcCCccEEEEcCCCC-CC------------CHHHHHHHHHHHHcCCcEEEEecCCCCC---CCCccHH-HHHHHhCc
Q psy15702          3 TPELLRAASLFICTGPRE-QF------------TITELNSLKTYLDEGGSLLIALGEEGER---GSSTNIN-FLLEQYGV   65 (259)
Q Consensus         3 t~~ip~~advLVI~~P~~-~f------------s~~E~~~L~~fl~~GG~llv~~~~~~~~---~~~~nln-~LL~~~Gi   65 (259)
                      +.+.+++.|++|+..... .+            ++.++++|++|+.+||.++++.++..-.   ....-.+ .|-+-+++
T Consensus        64 ~~~~L~~yDvIIl~d~~~~~~l~~~~~~~~~~~~~~~~~~l~~~V~~GGgLi~~gG~~~f~g~~~~g~~~~t~l~~vLPV  143 (248)
T 3soz_A           64 TAEALACYDAIVISDIGSNTFLLQNRTFYNMDIIPDALQLIADYVAEGGGLLMIGGYLSFTGIEAKANYKNTVLAEVLPV  143 (248)
T ss_dssp             SHHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCEEEEECSTTSSSCGGGCSCGGGSTHHHHSSE
T ss_pred             ChHHHhcCCEEEEcCCCcchhccCccccccccCCHHHHHHHHHHHHhCCEEEEEcCchhccccccccccccCcHHHhCCc
Confidence            456779999999998765 34            6788999999999999999998875310   0111112 14445577


Q ss_pred             ccCC-ceeeeccCCcccCCccccccCccchhhhhhhhcCCCccccccCcceEEecccceeeccCCcceEEeeCCcccccC
Q psy15702         66 SVNS-DCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVTEDSLASSLHFVYPYGASLNVIKPSVPVFSTGSASCPLN  144 (259)
Q Consensus        66 ~~~~-~~V~d~~~~~~~~P~~~~i~~~i~~~~i~~~~~~~i~~~~~~~~~~~~~p~~~~l~v~~~~~pll~ts~~s~p~~  144 (259)
                      ...+ +..+...  .-+.|..             ....|+++....  .+...+-+- .+.....++.|++..      .
T Consensus       144 ~~~~~~~r~e~p--~g~~~~~-------------~~~~Hpit~~l~--~~p~~~g~~-~v~~k~ga~vl~~~~------g  199 (248)
T 3soz_A          144 DMLDVDDRVELP--QGCKAVN-------------TAVEHVITQPFS--EWPPLLGYN-KLIAKENSQVLAEIN------G  199 (248)
T ss_dssp             ECCSSCCEEEEE--EEEEEEE-------------CSSCCTTTTTCS--EEEEEEEEE-CCEECSSCEEEEEET------T
T ss_pred             cccccCcccccC--CCccccc-------------cccCChhhcccc--cCCccccce-eeEeCCCCEEEEecC------C
Confidence            7642 2222100  0000100             011333332111  112122111 112222266777753      2


Q ss_pred             cceEEEEeecCCCcEEEEEecCcc--cc-cccccccccHHHHHHHHHhhc
Q psy15702        145 RPVVSFYRDKTRGGKLVVLGSAAL--FS-DQYLEREENDKMRQIILSFLL  191 (259)
Q Consensus       145 ~pv~A~~~~~~~~grvvViGs~~~--~~-d~~~~~~~N~~f~~n~i~wL~  191 (259)
                      .|+.|..+  .+.||++.+++...  .. ..|..-..-..|+.++++||+
T Consensus       200 ~PlLa~~~--~G~GRv~~lasD~~~~W~~~~~~~w~~y~~fw~~lv~WL~  247 (248)
T 3soz_A          200 DPLLVMGT--YHKGKVCCFASDCSPHWGSPQFLQWEHYATFWCNVLHTIK  247 (248)
T ss_dssp             EEEEEEEE--ETTEEEEEESSCSSTTTSCHHHHTCSSHHHHHHHHHHHHC
T ss_pred             ceEEEEec--cCCcEEEEEecCCCccccccccccCccHHHHHHHHHHHHh
Confidence            47777765  48999999996322  11 123223567899999999996

>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}

Probab=97.75  E-value=0.00023  Score=61.46  Aligned_cols=46  Identities=28%  Similarity=0.351  Sum_probs=37.9

Q ss_pred             ChhhcCCccEEEEcCC-CCCCCHHHHHHHHHHHHcCCcEEEEecCCC
Q psy15702          3 TPELLRAASLFICTGP-REQFTITELNSLKTYLDEGGSLLIALGEEG   48 (259)
Q Consensus         3 t~~ip~~advLVI~~P-~~~fs~~E~~~L~~fl~~GG~llv~~~~~~   48 (259)
                      +.+.+++.|++|+... ...+++..+++|++|+++||.++++.++..
T Consensus        44 ~~~~L~~yDvIIl~d~~~~~l~~~~~~~L~~yV~~GGgLi~~gG~~s   90 (259)
T 3rht_A           44 VGELLAKQDLVILSDYPAERMTAQAIDQLVTMVKAGCGLVMLGGWES   90 (259)
T ss_dssp             SSHHHHTCSEEEEESCCGGGBCHHHHHHHHHHHHTTCEEEEECSTTS
T ss_pred             ChhHHhcCCEEEEcCCccccCCHHHHHHHHHHHHhCCeEEEecCccc
Confidence            3466789999999853 346999999999999999999999877643

>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}

Probab=97.48  E-value=0.002  Score=56.22  Aligned_cols=189  Identities=10%  Similarity=-0.008  Sum_probs=101.4

Q ss_pred             hhcCCccEEEEcCCCCCCCHHHHHHHHHHHHcCCcEEEEecCCCCCCCCccHHHHHH-H-hC---------cccCCceee
Q psy15702          5 ELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLE-Q-YG---------VSVNSDCVV   73 (259)
Q Consensus         5 ~ip~~advLVI~~P~~~fs~~E~~~L~~fl~~GG~llv~~~~~~~~~~~~nln~LL~-~-~G---------i~~~~~~V~   73 (259)
                      +.++++|+||+......++++..++|.+|+++||.++.+=.........+.++.|+- . |+         +.++++..+
T Consensus        54 ~~L~~~D~vV~~~~~~~l~~~~~~~l~~yV~~Ggglv~~H~a~~~~~~w~~y~~liG~g~f~~r~~~~gp~~~~~~g~~v  133 (281)
T 4e5v_A           54 LDFSPYQLVVLDYNGDSWPEETNRRFLEYVQNGGGVVIYHAADNAFSKWPEFNRICALGGWEGRNENSGPYVYWKDGKLV  133 (281)
T ss_dssp             CCCTTCSEEEECCCSSCCCHHHHHHHHHHHHTTCEEEEEGGGGGSCTTCHHHHHHHSCBCCTTCSGGGCCEEEEETTEEE
T ss_pred             hhhhcCCEEEEeCCCCcCCHHHHHHHHHHHHcCCCEEEEecccccCCCCHHHHHheecccccccccccccceeecccccc
Confidence            358999999988877789999999999999999999888543221112234444444 2 21         222333323


Q ss_pred             -eccCCc-ccCCccccccCccchhhhhhhhcCCCccccccCcce----EEecccceeeccCCcceEEeeCCcccc----c
Q psy15702         74 -RCHFYK-YFHPKECFIGNGVLNRGIAEALHRDVTEDSLASSLH----FVYPYGASLNVIKPSVPVFSTGSASCP----L  143 (259)
Q Consensus        74 -d~~~~~-~~~P~~~~i~~~i~~~~i~~~~~~~i~~~~~~~~~~----~~~p~~~~l~v~~~~~pll~ts~~s~p----~  143 (259)
                       |.+... ..||...   ...+   ......||++...... ..    -.|..-.  .....+.+|+++....++    .
T Consensus       134 ~~~~~g~~~~Hp~~~---~~~v---~v~~~~HPit~Gl~~~-~~~~~dE~Y~~~~--~p~~~~~VL~t~~~~~~~~~~g~  204 (281)
T 4e5v_A          134 KDSSAGPGGSHGRQH---EYVL---NGRDKVHPVVKGLPLK-WRHAKDELYDRMR--GPGNIRDILYTAYSDKETNGSGR  204 (281)
T ss_dssp             EECCSCCSCBCCSCE---EEEE---EESCSSSTTTTTSCSE-EEEEEECCCBSCB--SCCCEEEEEEEEECCGGGTCCSS
T ss_pred             cccccccccCCCCCc---eEEE---EEcCCCCchhhCCCCc-ccccccCCccccc--CCCCCCEEEEEEeccCcCCCCCC
Confidence             433222 3455321   0000   0112345555322210 00    0111110  111125677777665442    2


Q ss_pred             CcceEEEEeecCCCcEEEEEecCcc----cccccccccccHHHHHHHHHhhcCCCCCccccCCCCC
Q psy15702        144 NRPVVSFYRDKTRGGKLVVLGSAAL----FSDQYLEREENDKMRQIILSFLLTDDINLNQIDADDA  205 (259)
Q Consensus       144 ~~pv~A~~~~~~~~grvvViGs~~~----~~d~~~~~~~N~~f~~n~i~wL~~~~~~l~~I~~k~~  205 (259)
                      ..|++-..+  .++||+...+=++-    -+...+...+=++++.|.+.|+++. .....|+..-+
T Consensus       205 ~~Pv~W~~~--~g~GRvFyt~lGH~~~~w~~~~~~~~p~f~~ll~~gi~Waa~g-~~~~~~p~~~~  267 (281)
T 4e5v_A          205 EEPLVFTVD--YGNARIFHTMLGHAGATTEDNIAMQCTGFQVLLLRGAEWAATG-KVTQKVPKDFP  267 (281)
T ss_dssp             EEEEEEEEC--STTCEEEEECCCCCCSSSSSCHHHHBHHHHHHHHHHHHHHHHS-CCCCCCCTTCC
T ss_pred             cceEEEEEE--eCCeeEEEECCCCcccccCCccccCCHHHHHHHHHHHHHHhCC-CCCCCCCCcCC
Confidence            245654443  58899988877763    1122233355678999999999976 33344555433

>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*

Probab=96.78  E-value=0.0073  Score=58.16  Aligned_cols=65  Identities=14%  Similarity=0.193  Sum_probs=47.9

Q ss_pred             hhcCCccEEEEcC-CCCCCCHH-------HHHHHHHHHHcCCcEEEEecCCCCC--CCCccHHHHHHHhCcccCCc
Q psy15702          5 ELLRAASLFICTG-PREQFTIT-------ELNSLKTYLDEGGSLLIALGEEGER--GSSTNINFLLEQYGVSVNSD   70 (259)
Q Consensus         5 ~ip~~advLVI~~-P~~~fs~~-------E~~~L~~fl~~GG~llv~~~~~~~~--~~~~nln~LL~~~Gi~~~~~   70 (259)
                      ++|++.|+||-+| -.+.||..       -+.+|++|+.+||.++..-++..-.  ....-+. |..=+|+....+
T Consensus       496 e~L~d~DVIIn~G~A~TalSgg~~W~~p~~~~aLR~fV~~GGgLIgVGepSsfqg~g~gryFq-LADVLGVd~e~g  570 (759)
T 2zuv_A          496 GIDSDIDVIINGGPVDTAFTGGDVWTNPKLVETVRAWVRGGGAFVGVGEPSSAPRFQTGRFFQ-LADVIGVDEERY  570 (759)
T ss_dssp             CCCTTCCEEEEEECTTSTTTCGGGGGCHHHHHHHHHHHHTTCEEEEEESTTEEEEEETTEEET-THHHHSEEECCS
T ss_pred             cccccCCEEEecCcchhcccCccccCCHHHHHHHHHHHHcCCcEEEeCCccccccccCccccc-HHhhcCcccccC
Confidence            6799999999888 44567776       7999999999999998887774211  1223333 777789988764

>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6

Probab=94.14  E-value=0.04  Score=47.11  Aligned_cols=42  Identities=17%  Similarity=0.313  Sum_probs=35.3

Q ss_pred             CChhhcCCccEEEEcC--CCCCCCHHHHHHHHHHHHcCCcEEEE
Q psy15702          2 ITPELLRAASLFICTG--PREQFTITELNSLKTYLDEGGSLLIA   43 (259)
Q Consensus         2 lt~~ip~~advLVI~~--P~~~fs~~E~~~L~~fl~~GG~llv~   43 (259)
                      ++.+.++++|+||+.+  ....++++..++|++|+++||.++.+
T Consensus        60 ~~~~~L~~~DvvV~~~~~~~~~l~~~~~~al~~~V~~GgG~vgi  103 (252)
T 1t0b_A           60 LTDEVLDRCDVLVWWGHIAHDEVKDEVVERVHRRVLEGMGLIVL  103 (252)
T ss_dssp             CCHHHHHTCSEEEEECSSCGGGSCHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCHhHHhcCCEEEEecCCCCCcCCHHHHHHHHHHHHcCCCEEEE
Confidence            4567899999999852  23358999999999999999999888

>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*

Probab=82.52  E-value=1.1  Score=43.39  Aligned_cols=40  Identities=10%  Similarity=0.119  Sum_probs=33.9

Q ss_pred             hcCCccEEEEcCCCCCCCHHHHHHHHHHHHcCCcEEEEecC
Q psy15702          6 LLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGE   46 (259)
Q Consensus         6 ip~~advLVI~~P~~~fs~~E~~~L~~fl~~GG~llv~~~~   46 (259)
                      -++++++||+.+-. -++++..++|++|+++||+|++..-.
T Consensus       449 dL~~Yklvv~P~~~-~~~~~~~~~L~~yV~~GG~lv~t~~s  488 (675)
T 3tty_A          449 DLSKYKVVIAPVMY-MVKPGFAERVERFVAQGGTFVTTFFS  488 (675)
T ss_dssp             CCTTCSEEEETTCC-BCCTTHHHHHHHHHHTTCEEEEETTC
T ss_pred             CcccCCEEEEeccE-ecCHHHHHHHHHHHhcCCEEEEEccC
Confidence            46789999888776 48999999999999999999987433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d2gk3a1	246	Putative cytoplasmic protein STM3548 {Salmonella t	98.24
d1t0ba_	240	GK2113 homologue {Bacillus stearothermophilus [Tax	93.68
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	82.06

>d2gk3a1 c.23.16.9 (A:8-253) Putative cytoplasmic protein STM3548 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: STM3548-like
domain: Putative cytoplasmic protein STM3548
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.24  E-value=2.4e-06  Score=71.38  Aligned_cols=165  Identities=15%  Similarity=0.141  Sum_probs=85.1

Q ss_pred             ChhhcCCccEEEEcCC-------------CCCCCHHHHHHHHHHHHcCCcEEEEecCCCCCC---CCccHHHHHHH-hCc
Q psy15702          3 TPELLRAASLFICTGP-------------REQFTITELNSLKTYLDEGGSLLIALGEEGERG---SSTNINFLLEQ-YGV   65 (259)
Q Consensus         3 t~~ip~~advLVI~~P-------------~~~fs~~E~~~L~~fl~~GG~llv~~~~~~~~~---~~~nln~LL~~-~Gi   65 (259)
                      |.+-+.+.|++||...             +.+++++.+++|++|+++||.++++.++..-..   ...--+..+++ ..+
T Consensus        61 ~~~~l~~yDvvIl~D~~a~~~~~~~~~~~~~~~~p~ql~~L~~fV~~GGGLi~igG~~s~~~~~~~~~~~~t~l~~llPv  140 (246)
T d2gk3a1          61 SIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGGLLMIGGYLSFMGIEAKANYKNTVLAEVLPV  140 (246)
T ss_dssp             SHHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCEEEEECSTTSSSCGGGTTCGGGSTTGGGSSE
T ss_pred             CHHHHhcCCEEEEecCchhhcccCcchhhcccCCHHHHHHHHHHHHhCCCEEEecCcccccccccccccccCcHHHhCcc
Confidence            5567888999999653             346889999999999999999888866543100   00000111111 111


Q ss_pred             ccCCceeeeccCCcccCCccccccCccchhhhhhhhcCCCccccccCcceEEecccceeeccCCcceEEeeCCcccccCc
Q psy15702         66 SVNSDCVVRCHFYKYFHPKECFIGNGVLNRGIAEALHRDVTEDSLASSLHFVYPYGASLNVIKPSVPVFSTGSASCPLNR  145 (259)
Q Consensus        66 ~~~~~~V~d~~~~~~~~P~~~~i~~~i~~~~i~~~~~~~i~~~~~~~~~~~~~p~~~~l~v~~~~~pll~ts~~s~p~~~  145 (259)
                      .+....-..... ..+.|..             ....|+++....  ....++-+ ......+.++.|+....      .
T Consensus       141 ~~~~~~~~~e~~-~~~~~~~-------------~~~~hp~~~~~~--~~p~~~~~-~~~~~k~~a~vLa~~~~------~  197 (246)
T d2gk3a1         141 IMLDGDDRVEKP-EGICAEA-------------VSPEHPVVNGFS--DYPVFLGY-NQAVARDDADVVLTINN------D  197 (246)
T ss_dssp             EECSSCCEEEEE-EEEEEEE-------------SSTTSTTTTTCC--SCCEEEEE-ECEEECTTCEEEEEETT------E
T ss_pred             cccccccccCCc-ccceeee-------------cCcCCccccccC--CCCCccce-EEEecCCccEEEEecCC------C
Confidence            111100000000 0000100             001122221111  01111111 11233334666665543      4


Q ss_pred             ceEEEEeecCCCcEEEEEecCc---ccccccccccccHHHHHHHHHhhcC
Q psy15702        146 PVVSFYRDKTRGGKLVVLGSAA---LFSDQYLEREENDKMRQIILSFLLT  192 (259)
Q Consensus       146 pv~A~~~~~~~~grvvViGs~~---~~~d~~~~~~~N~~f~~n~i~wL~~  192 (259)
                      |+.|..+  .+.||++++++..   +....+..-....+|..++++||++
T Consensus       198 Plla~~~--yG~GRv~~~asD~~~~W~~~~~~~~~~y~~fW~q~i~wLa~  245 (246)
T d2gk3a1         198 PLLVFGE--YQQGKTACFMSDCSPHWGTQQFMSWPFYTDLWVNTLQFIAR  245 (246)
T ss_dssp             EEEEEEE--ETTEEEEEECSCSSTTTBCHHHHTCTTHHHHHHHHHHHHSC
T ss_pred             cEEEEec--ccCcEEEEEecCCCccccccccccCccHHHHHHHHHHHHhc
Confidence            7777765  4889999999643   2333444446788999999999986

>d1t0ba_ c.23.16.6 (A:) GK2113 homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: ThuA-like
domain: GK2113 homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.68  E-value=0.031  Score=45.31  Aligned_cols=42  Identities=17%  Similarity=0.302  Sum_probs=35.2

Q ss_pred             CChhhcCCccEEEEcCC--CCCCCHHHHHHHHHHHHcCCcEEEE
Q psy15702          2 ITPELLRAASLFICTGP--REQFTITELNSLKTYLDEGGSLLIA   43 (259)
Q Consensus         2 lt~~ip~~advLVI~~P--~~~fs~~E~~~L~~fl~~GG~llv~   43 (259)
                      ++.+.++++|+||+.+=  ...++++..++|++|+++||.++.+
T Consensus        55 ~~~~~L~~~Dvli~~~~~~~~~l~~~q~~al~~~v~~G~G~Vgl   98 (240)
T d1t0ba_          55 LTDEVLDRCDVLVWWGHIAHDEVKDEVVERVHRRVLEGMGLIVL   98 (240)
T ss_dssp             CCHHHHHTCSEEEEECSSCGGGSCHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCHHHHhcCCEEEEeCCCCCCcCCHHHHHHHHHHHHcCCCEEEE
Confidence            57789999999998643  2368999999999999999987666

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=82.06  E-value=1.7  Score=30.43  Aligned_cols=61  Identities=23%  Similarity=0.293  Sum_probs=46.4

Q ss_pred             hhhcCCccEEEEcCCCCCCCHHHHHHHHHHHHcCCcEEEEecCCCCCCCCccHHHHHHHhCccc-CCcee
Q psy15702          4 PELLRAASLFICTGPREQFTITELNSLKTYLDEGGSLLIALGEEGERGSSTNINFLLEQYGVSV-NSDCV   72 (259)
Q Consensus         4 ~~ip~~advLVI~~P~~~fs~~E~~~L~~fl~~GG~llv~~~~~~~~~~~~nln~LL~~~Gi~~-~~~~V   72 (259)
                      .++|+..|+++|.-|    .+.-.+.+++-++.|=+.+++ .++.   ....+..++++.||.+ .+.++
T Consensus        51 ~~lp~~~D~vvi~vp----~~~~~~~l~~~~~~g~k~v~~-~~g~---~~~~~~~~a~~~gi~vigpnC~  112 (116)
T d1y81a1          51 RELPKDVDVIVFVVP----PKVGLQVAKEAVEAGFKKLWF-QPGA---ESEEIRRFLEKAGVEYSFGRCI  112 (116)
T ss_dssp             GGSCTTCCEEEECSC----HHHHHHHHHHHHHTTCCEEEE-CTTS---CCHHHHHHHHHHTCEEECSCCH
T ss_pred             hhccccceEEEEEeC----HHHHHHHHHHHHhcCCceEEe-ccch---hhHHHHHHHHHcCCEEEcCCCC
Confidence            368999999999988    345567888889999887765 4444   3577999999999986 44443