Psyllid ID: psy15728

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MTSKHGRIKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREVG
Secondary Structure (PSIPRED)
ccccccccccHHHHHccHHHHHHHcccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccHHcccccccccccccccHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHcccccccccccccccccccccccccccccccccHHHccccHHHHHHHHHHHHHcccHHHHHHHHHccccccEEEEccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccccc
Coil and Loop (DISEMBL)
mtskhgrikfapggnrthdqvrtrhssseeetpnslsaELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNveinlsqkgesksnlgwtplhlasYFGHKSVVEFLLDqgvdinavndagdtplhkaafvgrevg
Flexible Loop (DISEMBL)
mtskhgrikfapggnrthdqvRTRHssseeetpnslsAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREVG
Low Complexity Region (SEG)
MTSKHGRIKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREVG
Disordered region (IsUnstruct)
******************************************LSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINL********NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLH**********
Disordered Region (DISOPRED)
MTSKHGRIKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE**
Disordered Region (DISEMBL)
MTSKHGRIKFAPGG***********************AELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREVG
Disordered Region (DISPRO)
*******************************TPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFV*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTSKHGRIKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREVG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q9BXW6	950	Oxysterol-binding protein	yes	N/A	0.597	0.087	0.527	2e-23
Q8K4M9	950	Oxysterol-binding protein	yes	N/A	0.597	0.087	0.516	4e-22
Q91XL9	950	Oxysterol-binding protein	yes	N/A	0.589	0.086	0.527	5e-22
Q54KA7	986	Ankyrin repeat, PH and SE	no	N/A	0.582	0.082	0.363	6e-09
Q13418	452	Integrin-linked protein k	no	N/A	0.532	0.163	0.369	2e-08
Q5R5V4	452	Integrin-linked protein k	yes	N/A	0.532	0.163	0.369	2e-08
Q99J82	452	Integrin-linked protein k	no	N/A	0.532	0.163	0.369	2e-08
O55222	452	Integrin-linked protein k	no	N/A	0.532	0.163	0.369	2e-08
P57044	451	Integrin-linked protein k	no	N/A	0.532	0.164	0.369	2e-08
Q3SWY2	452	Integrin-linked protein k	no	N/A	0.532	0.163	0.369	2e-08

>sp|Q9BXW6|OSBL1_HUMAN Oxysterol-binding protein-related protein 1 OS=Homo sapiens GN=OSBPL1A PE=1 SV=2

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 66/91 (72%)

Query: 47  EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV 106
           E  +  L++ RNG  ++++QLL+    N V  +++ KG SKSNLGWTPLHLA YFGH+ V
Sbjct: 4   EAEQQLLHHARNGNAEEVRQLLETMARNEVIADINCKGRSKSNLGWTPLHLACYFGHRQV 63

Query: 107 VEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
           V+ LL  G ++N +ND GDTPLH+AAF GR+
Sbjct: 64  VQDLLKAGAEVNVLNDMGDTPLHRAAFTGRK 94

Binds phospholipids; exhibits strong binding to phosphatidic acid and weak binding to phosphatidylinositol 3-phosphate (By similarity). Stabilizes GTP-bound RAB7A on late endosomes/lysosomes and alters functional properties of late endocytic compartments via its interaction with RAB7A.
Homo sapiens (taxid: 9606)

>sp|Q8K4M9|OSBL1_RAT Oxysterol-binding protein-related protein 1 OS=Rattus norvegicus GN=Osbpl1a PE=1 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 63/91 (69%)

Query: 47  EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV 106
           E  +  L++ RNG  +++++LL+      V  ++  KG SKSNLGWTPLHLA YFGHK V
Sbjct: 4   EAEQQLLHHARNGNAEEVRKLLEAMARAEVVADIDCKGRSKSNLGWTPLHLACYFGHKQV 63

Query: 107 VEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
           V+ LL  G  +N +ND GDTPLH+AAF GR+
Sbjct: 64  VQDLLKAGAKVNMLNDMGDTPLHRAAFTGRK 94

Binds phospholipids; exhibits strong binding to phosphatidic acid and weak binding to phosphatidylinositol 3-phosphate (By similarity). Stabilizes GTP-bound RAB7A on late endosomes/lysosomes and alters functional properties of late endocytic compartments via its interaction with RAB7A.

Rattus norvegicus (taxid: 10116)

>sp|Q91XL9|OSBL1_MOUSE Oxysterol-binding protein-related protein 1 OS=Mus musculus GN=Osbpl1a PE=1 SV=2

 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 62/91 (68%)

Query: 47  EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV 106
           E  +  L++ RNG  +++++LL       V  ++  KG SKSNLGWTPLHLA YFGHK V
Sbjct: 4   EAEQQLLHHARNGNAEEVRKLLAAMARMEVVADIDCKGRSKSNLGWTPLHLACYFGHKQV 63

Query: 107 VEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
           VE LL  G  +N +ND GDTPLH+AAF GR+
Sbjct: 64  VEDLLKAGAKVNMLNDMGDTPLHRAAFTGRK 94

Binds phospholipids; exhibits strong binding to phosphatidic acid and weak binding to phosphatidylinositol 3-phosphate. Stabilizes GTP-bound RAB7A on late endosomes/lysosomes and alters functional properties of late endocytic compartments via its interaction with RAB7A.

Mus musculus (taxid: 10090)

>sp|Q54KA7|SECG_DICDI Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Dictyostelium discoideum GN=secG PE=2 SV=1

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 52/110 (47%), Gaps = 29/110 (26%)

Query: 46  KEIHELFLY------NCR-------------NGQLDKIKQLLDHCKENNVEINLSQKGES 86
           KE+ E  LY      +CR             NG LD +  L+ +  + N+          
Sbjct: 314 KEVCEYLLYLDPTMIDCRDSRQSTSLHLAAFNGLLDMVDLLIRYKAQINI---------- 363

Query: 87  KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
           K   G TPLH AS+ GH S  + L+D+G  I  V+  G TPLHKAAF GR
Sbjct: 364 KDEEGATPLHKASFNGHSSCAKLLVDKGAPICIVDSQGATPLHKAAFNGR 413

Dictyostelium discoideum (taxid: 44689)

>sp|Q13418|ILK_HUMAN Integrin-linked protein kinase OS=Homo sapiens GN=ILK PE=1 SV=2

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 10/84 (11%)

Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
           + CR G+   ++ L+         IN+  +G+       TPLHLA+  GH+ +V+ LL  
Sbjct: 40  WACREGRSAVVEMLI----MRGARINVMNRGDD------TPLHLAASHGHRDIVQKLLQY 89

Query: 114 GVDINAVNDAGDTPLHKAAFVGRE 137
             DINAVN+ G+ PLH A F G++
Sbjct: 90  KADINAVNEHGNVPLHYACFWGQD 113

Receptor-proximal protein kinase regulating integrin-mediated signal transduction. May act as a mediator of inside-out integrin signaling. Focal adhesion protein part of the complex ILK-PINCH. This complex is considered to be one of the convergence points of integrin- and growth factor-signaling pathway. Could be implicated in mediating cell architecture, adhesion to integrin substrates and anchorage-dependent growth in epithelial cells. Phosphorylates beta-1 and beta-3 integrin subunit on serine and threonine residues, but also AKT1 and GSK3B.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q5R5V4|ILK_PONAB Integrin-linked protein kinase OS=Pongo abelii GN=ILK PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 10/84 (11%)

Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
           + CR G+   ++ L+         IN+  +G+       TPLHLA+  GH+ +V+ LL  
Sbjct: 40  WACREGRSAVVEMLI----MRGARINVMNRGDD------TPLHLAASHGHRDIVQKLLQY 89

Query: 114 GVDINAVNDAGDTPLHKAAFVGRE 137
             DINAVN+ G+ PLH A F G++
Sbjct: 90  KADINAVNEHGNVPLHYACFWGQD 113

Receptor-proximal protein kinase regulating integrin-mediated signal transduction. May act as a mediator of inside-out integrin signaling. Focal adhesion protein part of the complex ILK-PINCH. This complex is considered to be one of the convergence points of integrin- and growth factor-signaling pathway. Could be implicated in mediating cell architecture, adhesion to integrin substrates and anchorage-dependent growth in epithelial cells. Phosphorylates beta-1 and beta-3 integrin subunit on serine and threonine residues, but also AKT1 and GSK3B.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q99J82|ILK_RAT Integrin-linked protein kinase OS=Rattus norvegicus GN=Ilk PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 10/84 (11%)

Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
           + CR G+   ++ L+         IN+  +G+       TPLHLA+  GH+ +V+ LL  
Sbjct: 40  WACREGRSAVVEMLI----MRGARINVMNRGDD------TPLHLAASHGHRDIVQKLLQY 89

Query: 114 GVDINAVNDAGDTPLHKAAFVGRE 137
             DINAVN+ G+ PLH A F G++
Sbjct: 90  KADINAVNEHGNVPLHYACFWGQD 113

Receptor-proximal protein kinase regulating integrin-mediated signal transduction. May act as a mediator of inside-out integrin signaling. Focal adhesion protein part of the complex ILK-PINCH. This complex is considered to be one of the convergence points of integrin- and growth factor-signaling pathway. Could be implicated in mediating cell architecture, adhesion to integrin substrates and anchorage-dependent growth in epithelial cells. Phosphorylates beta-1 and beta-3 integrin subunit on serine and threonine residues, but also AKT1 and GSK3B.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O55222|ILK_MOUSE Integrin-linked protein kinase OS=Mus musculus GN=Ilk PE=1 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 10/84 (11%)

Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
           + CR G+   ++ L+         IN+  +G+       TPLHLA+  GH+ +V+ LL  
Sbjct: 40  WACREGRSAVVEMLI----MRGARINVMNRGDD------TPLHLAASHGHRDIVQKLLQY 89

Query: 114 GVDINAVNDAGDTPLHKAAFVGRE 137
             DINAVN+ G+ PLH A F G++
Sbjct: 90  KADINAVNEHGNVPLHYACFWGQD 113

Receptor-proximal protein kinase regulating integrin-mediated signal transduction. May act as a mediator of inside-out integrin signaling. Focal adhesion protein part of the complex ILK-PINCH. This complex is considered to be one of the convergence points of integrin- and growth factor-signaling pathway. Could be implicated in mediating cell architecture, adhesion to integrin substrates and anchorage-dependent growth in epithelial cells. Phosphorylates beta-1 and beta-3 integrin subunit on serine and threonine residues, but also AKT1 and GSK3B.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P57044|ILK_CAVPO Integrin-linked protein kinase OS=Cavia porcellus GN=ILK PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 10/84 (11%)

Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
           + CR G+   ++ L+         IN+  +G+       TPLHLA+  GH+ +V+ LL  
Sbjct: 40  WACREGRSAVVEMLI----MRGARINVMNRGDD------TPLHLAASHGHRDIVQKLLQY 89

Query: 114 GVDINAVNDAGDTPLHKAAFVGRE 137
             DINAVN+ G+ PLH A F G++
Sbjct: 90  KADINAVNEHGNVPLHYACFWGQD 113

Receptor-proximal protein kinase regulating integrin-mediated signal transduction. May act as a mediator of inside-out integrin signaling. Focal adhesion protein part of the complex ILK-PINCH. This complex is considered to be one of the convergence points of integrin- and growth factor-signaling pathway. Could be implicated in mediating cell architecture, adhesion to integrin substrates and anchorage-dependent growth in epithelial cells. Phosphorylates beta-1 and beta-3 integrin subunit on serine and threonine residues, but also AKT1 and GSK3B.

Cavia porcellus (taxid: 10141)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q3SWY2|ILK_BOVIN Integrin-linked protein kinase OS=Bos taurus GN=ILK PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 10/84 (11%)

Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
           + CR G+   ++ L+         IN+  +G+       TPLHLA+  GH+ +V+ LL  
Sbjct: 40  WACREGRSAVVEMLI----MRGARINVMNRGDD------TPLHLAASHGHRDIVQKLLQY 89

Query: 114 GVDINAVNDAGDTPLHKAAFVGRE 137
             DINAVN+ G+ PLH A F G++
Sbjct: 90  KADINAVNEHGNVPLHYACFWGQD 113

Receptor-proximal protein kinase regulating integrin-mediated signal transduction. May act as a mediator of inside-out integrin signaling. Focal adhesion protein part of the complex ILK-PINCH. This complex is considered to be one of the convergence points of integrin- and growth factor-signaling pathway. Could be implicated in mediating cell architecture, adhesion to integrin substrates and anchorage-dependent growth in epithelial cells. Phosphorylates beta-1 and beta-3 integrin subunit on serine and threonine residues, but also AKT1 and GSK3B.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
242020883	581	osbpl1a, putative [Pediculus humanus cor	0.712	0.170	0.535	3e-23
224046169	953	PREDICTED: oxysterol-binding protein-rel	0.597	0.087	0.538	1e-22
118086882	954	PREDICTED: oxysterol-binding protein-rel	0.597	0.087	0.538	3e-22
357602512	546	putative osbpl1a [Danaus plexippus]	0.589	0.150	0.533	3e-22
301753729	950	PREDICTED: oxysterol-binding protein-rel	0.589	0.086	0.527	4e-22
73961796	950	PREDICTED: oxysterol-binding protein-rel	0.589	0.086	0.538	6e-22
449270395	954	Oxysterol-binding protein-related protei	0.597	0.087	0.527	6e-22
327269829	953	PREDICTED: oxysterol-binding protein-rel	0.597	0.087	0.538	7e-22
431896279	950	Oxysterol-binding protein-related protei	0.597	0.087	0.527	1e-21
351707296	950	Oxysterol-binding protein-related protei	0.553	0.081	0.546	1e-21

>gi|242020883|ref|XP_002430880.1| osbpl1a, putative [Pediculus humanus corporis] gi|212516091|gb|EEB18142.1| osbpl1a, putative [Pediculus humanus corporis]

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 74/99 (74%)

Query: 39  ELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLA 98
           E  + + +E  EL LY+ R+G +  + +LL +  +N+ + ++  KG++KSNLGWTPLHLA
Sbjct: 5   ERKEYTKQEFEELLLYSSRHGNVKIVSELLLYRSKNSNDFDIDCKGKTKSNLGWTPLHLA 64

Query: 99  SYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
           +YFGH +VVE LL  G D+N+VNDAGDT LHKAAF+GRE
Sbjct: 65  TYFGHLNVVEKLLKGGCDVNSVNDAGDTSLHKAAFIGRE 103

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|224046169|ref|XP_002195421.1| PREDICTED: oxysterol-binding protein-related protein 1 [Taeniopygia guttata]

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 65/91 (71%)

Query: 47  EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV 106
           E  +  L++ RNG  +++KQLLD   +  +  +++ KG SKSN+GWTPLHLA YFGH  V
Sbjct: 4   EAEQQLLHDARNGNAEEVKQLLDTLDKGEISFDINCKGRSKSNMGWTPLHLACYFGHAVV 63

Query: 107 VEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
           VE LL  G D+N +ND GDTPLH+AAF GR+
Sbjct: 64  VEDLLKAGADVNVLNDMGDTPLHRAAFTGRK 94

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|118086882|ref|XP_419165.2| PREDICTED: oxysterol-binding protein-related protein 1 isoform 2 [Gallus gallus]

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 65/91 (71%)

Query: 47  EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV 106
           E  +  L++ RNG  +++KQLLD   +  +  +++ KG SKSN+GWTPLHLA YFGH  V
Sbjct: 4   EAEQQLLHDARNGNAEEVKQLLDTMSKGEIIFDINCKGRSKSNMGWTPLHLACYFGHAVV 63

Query: 107 VEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
           VE LL  G D+N +ND GDTPLH+AAF GR+
Sbjct: 64  VEDLLKAGADVNVLNDMGDTPLHRAAFTGRK 94

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|357602512|gb|EHJ63430.1| putative osbpl1a [Danaus plexippus]

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 67/90 (74%)

Query: 46  KEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKS 105
           +E  E  LY+ R+G+L  +K LL+  +E  + +N+  +G++K+NLGWTPLHLA+YF HK 
Sbjct: 10  QEAEESLLYSARHGELTVVKALLEARRERKLTLNIDCRGKNKTNLGWTPLHLATYFRHKD 69

Query: 106 VVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
           VVE LLD G +++ VND GDT LHKAAF+G
Sbjct: 70  VVEVLLDAGANVDEVNDTGDTALHKAAFIG 99

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301753729|ref|XP_002912705.1| PREDICTED: oxysterol-binding protein-related protein 1-like [Ailuropoda melanoleuca] gi|281338279|gb|EFB13863.1| hypothetical protein PANDA_000448 [Ailuropoda melanoleuca]

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 68/91 (74%)

Query: 47  EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV 106
           E  +  L++ RNG +++++QLL+  + N V  +++ KG SKSNLGWTPLHLA YFGH+ V
Sbjct: 4   ETEQQLLHHARNGNVEEVRQLLETMERNEVIADINCKGRSKSNLGWTPLHLACYFGHRQV 63

Query: 107 VEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
           V+ LL  G ++N +ND GDTPLH+AAF GR+
Sbjct: 64  VQDLLKAGAEVNVLNDMGDTPLHRAAFTGRK 94

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|73961796|ref|XP_537881.2| PREDICTED: oxysterol-binding protein-related protein 1 isoform 1 [Canis lupus familiaris]

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 67/91 (73%)

Query: 47  EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV 106
           E  +  L++ RNG  ++++QLL+  + N V  +++ KG SKSNLGWTPLHLA YFGHK V
Sbjct: 4   EAEQQLLHHARNGNAEEVRQLLETMERNEVIADINCKGRSKSNLGWTPLHLACYFGHKQV 63

Query: 107 VEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
           V+ LL  G ++N +ND GDTPLH+AAF GR+
Sbjct: 64  VQDLLKAGAEVNVLNDMGDTPLHRAAFTGRK 94

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449270395|gb|EMC81074.1| Oxysterol-binding protein-related protein 1 [Columba livia]

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 65/91 (71%)

Query: 47  EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV 106
           E  +  L++ RNG  +++KQLL+   +  +  +++ KG SKSN+GWTPLHLA YFGH  V
Sbjct: 4   EAEQQLLHDARNGNAEEVKQLLNTMDKGEISFDINCKGRSKSNMGWTPLHLACYFGHAVV 63

Query: 107 VEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
           VE LL  G D+N +ND GDTPLH+AAF GR+
Sbjct: 64  VEDLLKAGADVNVLNDMGDTPLHRAAFTGRK 94

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327269829|ref|XP_003219695.1| PREDICTED: oxysterol-binding protein-related protein 1-like [Anolis carolinensis]

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 67/91 (73%)

Query: 47  EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV 106
           E  +  L++ RNG+ + I+QLL+  ++  +  N++ KG SKSNLGWTPLHLA YFGH SV
Sbjct: 4   EAEQELLHHARNGKSEDIRQLLEAMEKGEITFNINCKGTSKSNLGWTPLHLACYFGHTSV 63

Query: 107 VEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
           V+ LL  G D++ +ND GDTPLH+AAF GR+
Sbjct: 64  VKDLLKAGADVDVLNDMGDTPLHRAAFTGRK 94

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|431896279|gb|ELK05695.1| Oxysterol-binding protein-related protein 1 [Pteropus alecto]

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 67/91 (73%)

Query: 47  EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV 106
           E  +  L++ RNG  ++++QLL+  + N V  +++ KG SKSNLGWTPLHLA YFGH+ V
Sbjct: 4   EAEQQLLHHARNGNAEEVRQLLETVERNEVIADINCKGTSKSNLGWTPLHLACYFGHRQV 63

Query: 107 VEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
           V+ LL  G ++N +ND GDTPLH+AAF GR+
Sbjct: 64  VQDLLQAGAEVNVLNDMGDTPLHRAAFTGRK 94

Source: Pteropus alecto

Species: Pteropus alecto

Genus: Pteropus

Family: Pteropodidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|351707296|gb|EHB10215.1| Oxysterol-binding protein-related protein 1 [Heterocephalus glaber]

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 65/86 (75%)

Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L++ RNG  ++++QLL+  + N V  +++ KG SKSNLGWTPLHLA YFGH+ VV+ LL
Sbjct: 9   LLHHARNGNAEEVRQLLESMERNEVMADINCKGRSKSNLGWTPLHLACYFGHRQVVQDLL 68

Query: 112 DQGVDINAVNDAGDTPLHKAAFVGRE 137
             G ++N +ND GDTPLH+AAF GR+
Sbjct: 69  KAGAEVNVLNDMGDTPLHRAAFTGRK 94

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
UNIPROTKB|G3N0Z5	340	OSBPL1A "Uncharacterized prote	0.654	0.267	0.516	2.3e-23
UNIPROTKB|E2RMD4	950	OSBPL1A "Oxysterol-binding pro	0.654	0.095	0.538	9.2e-23
UNIPROTKB|E1C988	952	OSBPL1A "Oxysterol-binding pro	0.654	0.095	0.538	1.5e-22
UNIPROTKB|Q9BXW6	950	OSBPL1A "Oxysterol-binding pro	0.654	0.095	0.527	3.2e-22
UNIPROTKB|E1BLV1	952	OSBPL1A "Oxysterol-binding pro	0.654	0.095	0.516	4.1e-22
ZFIN|ZDB-GENE-050208-657	972	osbpl1a "oxysterol binding pro	0.611	0.087	0.604	4.9e-21
RGD|628888	950	Osbpl1a "oxysterol binding pro	0.654	0.095	0.516	7.8e-21
MGI|MGI:1927551	950	Osbpl1a "oxysterol binding pro	0.654	0.095	0.527	9.9e-21
TAIR|locus:505006600	144	AT5G12320 [Arabidopsis thalian	0.561	0.541	0.385	9.4e-11
ASPGD|ASPL0000075867	855	AN8767 [Emericella nidulans (t	0.755	0.122	0.318	4.1e-09

UNIPROTKB|G3N0Z5 OSBPL1A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 47/91 (51%), Positives = 67/91 (73%)

Query:    47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV 106
             +  +  L++ RNG  ++++QLL+  + N V  +++ KG SKSNLGWTPLHLA YFGH+ V
Sbjct:     4 DAEQQLLHHARNGNAEEVRQLLETMERNEVIADINCKGRSKSNLGWTPLHLACYFGHRQV 63

Query:   107 VEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
             V+ LL  G ++N +ND GDTPLH+AAF GR+
Sbjct:    64 VQDLLKAGAEVNVLNDMGDTPLHRAAFTGRK 94

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|E2RMD4 OSBPL1A "Oxysterol-binding protein" [Canis lupus familiaris (taxid:9615)]

 Score = 275 (101.9 bits), Expect = 9.2e-23, P = 9.2e-23
 Identities = 49/91 (53%), Positives = 67/91 (73%)

Query:    47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV 106
             E  +  L++ RNG  ++++QLL+  + N V  +++ KG SKSNLGWTPLHLA YFGHK V
Sbjct:     4 EAEQQLLHHARNGNAEEVRQLLETMERNEVIADINCKGRSKSNLGWTPLHLACYFGHKQV 63

Query:   107 VEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
             V+ LL  G ++N +ND GDTPLH+AAF GR+
Sbjct:    64 VQDLLKAGAEVNVLNDMGDTPLHRAAFTGRK 94

GO:0005770 "late endosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|E1C988 OSBPL1A "Oxysterol-binding protein" [Gallus gallus (taxid:9031)]

 Score = 273 (101.2 bits), Expect = 1.5e-22, P = 1.5e-22
 Identities = 49/91 (53%), Positives = 65/91 (71%)

Query:    47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV 106
             E  +  L++ RNG  +++KQLLD   +  +  +++ KG SKSN+GWTPLHLA YFGH  V
Sbjct:     4 EAEQQLLHDARNGNAEEVKQLLDTMSKGEIIFDINCKGRSKSNMGWTPLHLACYFGHAVV 63

Query:   107 VEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
             VE LL  G D+N +ND GDTPLH+AAF GR+
Sbjct:    64 VEDLLKAGADVNVLNDMGDTPLHRAAFTGRK 94

GO:0005543 "phospholipid binding" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

UNIPROTKB|Q9BXW6 OSBPL1A "Oxysterol-binding protein-related protein 1" [Homo sapiens (taxid:9606)]

 Score = 270 (100.1 bits), Expect = 3.2e-22, P = 3.2e-22
 Identities = 48/91 (52%), Positives = 66/91 (72%)

Query:    47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV 106
             E  +  L++ RNG  ++++QLL+    N V  +++ KG SKSNLGWTPLHLA YFGH+ V
Sbjct:     4 EAEQQLLHHARNGNAEEVRQLLETMARNEVIADINCKGRSKSNLGWTPLHLACYFGHRQV 63

Query:   107 VEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
             V+ LL  G ++N +ND GDTPLH+AAF GR+
Sbjct:    64 VQDLLKAGAEVNVLNDMGDTPLHRAAFTGRK 94

GO:0006869 "lipid transport" evidence=IEA

GO:0005543 "phospholipid binding" evidence=NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0005622 "intracellular" evidence=IC

GO:0008203 "cholesterol metabolic process" evidence=NAS

GO:0005770 "late endosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005765 "lysosomal membrane" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0015485 "cholesterol binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|E1BLV1 OSBPL1A "Oxysterol-binding protein" [Bos taurus (taxid:9913)]

 Score = 269 (99.8 bits), Expect = 4.1e-22, P = 4.1e-22
 Identities = 47/91 (51%), Positives = 67/91 (73%)

Query:    47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV 106
             +  +  L++ RNG  ++++QLL+  + N V  +++ KG SKSNLGWTPLHLA YFGH+ V
Sbjct:     4 DAEQQLLHHARNGNAEEVRQLLETMERNEVIADINCKGRSKSNLGWTPLHLACYFGHRQV 63

Query:   107 VEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
             V+ LL  G ++N +ND GDTPLH+AAF GR+
Sbjct:    64 VQDLLKAGAEVNVLNDMGDTPLHRAAFTGRK 94

GO:0005770 "late endosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

ZFIN|ZDB-GENE-050208-657 osbpl1a "oxysterol binding protein-like 1A" [Danio rerio (taxid:7955)]

 Score = 259 (96.2 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 55/91 (60%), Positives = 65/91 (71%)

Query:    50 ELFLYNCRNGQLDKIKQLLDHCK---ENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV 106
             E FL + RNG L+ I++LL  CK   E N++IN   KG+SKSN GWTPLHLA YFGH+ V
Sbjct:     8 EQFLRDARNGNLEGIQRLL-MCKIKEEANIDINC--KGKSKSNHGWTPLHLACYFGHRDV 64

Query:   107 VEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
             VE LL  G D N  N+ GDTPLHKAAF GR+
Sbjct:    65 VEALLKAGADANLPNNVGDTPLHKAAFTGRK 95

GO:0005543 "phospholipid binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

RGD|628888 Osbpl1a "oxysterol binding protein-like 1A" [Rattus norvegicus (taxid:10116)]

 Score = 257 (95.5 bits), Expect = 7.8e-21, P = 7.8e-21
 Identities = 47/91 (51%), Positives = 63/91 (69%)

Query:    47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV 106
             E  +  L++ RNG  +++++LL+      V  ++  KG SKSNLGWTPLHLA YFGHK V
Sbjct:     4 EAEQQLLHHARNGNAEEVRKLLEAMARAEVVADIDCKGRSKSNLGWTPLHLACYFGHKQV 63

Query:   107 VEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
             V+ LL  G  +N +ND GDTPLH+AAF GR+
Sbjct:    64 VQDLLKAGAKVNMLNDMGDTPLHRAAFTGRK 94

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005770 "late endosome" evidence=ISS

GO:0006869 "lipid transport" evidence=IEA

MGI|MGI:1927551 Osbpl1a "oxysterol binding protein-like 1A" [Mus musculus (taxid:10090)]

 Score = 256 (95.2 bits), Expect = 9.9e-21, P = 9.9e-21
 Identities = 48/91 (52%), Positives = 62/91 (68%)

Query:    47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV 106
             E  +  L++ RNG  +++++LL       V  ++  KG SKSNLGWTPLHLA YFGHK V
Sbjct:     4 EAEQQLLHHARNGNAEEVRKLLAAMARMEVVADIDCKGRSKSNLGWTPLHLACYFGHKQV 63

Query:   107 VEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
             VE LL  G  +N +ND GDTPLH+AAF GR+
Sbjct:    64 VEDLLKAGAKVNMLNDMGDTPLHRAAFTGRK 94

GO:0005515 "protein binding" evidence=IPI

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005770 "late endosome" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008289 "lipid binding" evidence=IEA

GO:0015485 "cholesterol binding" evidence=ISO

TAIR|locus:505006600 AT5G12320 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 32/83 (38%), Positives = 51/83 (61%)

Query:    58 NGQLDKIKQLLDHCKENNVEI--NLSQKG---ESKSNLGWTPLHLASYFGHKSVVEFLLD 112
             NG  +K+  LL+  + N+++    L+  G    S+ + G T LH+A+  GH ++VE+L+ 
Sbjct:     6 NGVAEKVDDLLEAARYNDIDDLRTLASDGLSLHSRDSQGRTALHMAAANGHMTIVEYLIS 65

Query:   113 QGVDINAVNDAGDTPLHKAAFVG 135
             +GVDINA+ND  + PLH A   G
Sbjct:    66 EGVDINALNDENNAPLHWACLNG 88

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000075867 AN8767 [Emericella nidulans (taxid:162425)]

 Score = 137 (53.3 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
 Identities = 35/110 (31%), Positives = 57/110 (51%)

Query:    31 ETPNSLSAELNQLSVKEI---HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKG--E 85
             +TP  ++ + N L +  +   H   + +        + Q + + +E+  E+ L      E
Sbjct:   626 QTPLDIATKQNDLELMNVLMEHGAEIDSVTEEGATPLHQAIINEREDIAEVLLEHGADPE 685

Query:    86 SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
             ++ + G  PLH A+  G + + E LLD+GVDI+  N  GDTPLHKAA  G
Sbjct:   686 AQDSHGDAPLHFAAASGRRKMAELLLDKGVDIDITNYTGDTPLHKAASNG 735

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8K4M9	OSBL1_RAT	No assigned EC number	0.5164	0.5971	0.0873	yes	N/A
Q91XL9	OSBL1_MOUSE	No assigned EC number	0.5274	0.5899	0.0863	yes	N/A
Q9BXW6	OSBL1_HUMAN	No assigned EC number	0.5274	0.5971	0.0873	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	139
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-16
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-12
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-12
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	8e-12
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-09
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-09
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-07
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	4e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	9e-07
smart00248	30	smart00248, ANK, ankyrin repeats	1e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-04
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	9e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.002

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 72.8 bits (179), Expect = 2e-17
 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
             NG L+ +K LL++  + N           K N G TPLHLA+  GH  +V+ LL++G 
Sbjct: 15  ASNGHLEVVKLLLENGADVNA----------KDNDGRTPLHLAAKNGHLEIVKLLLEKGA 64

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           D+NA +  G+TPLH AA  G  
Sbjct: 65  DVNARDKDGNTPLHLAARNGNL 86

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 72.0 bits (177), Expect = 3e-17
 Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            +NG L+ +K LL+   + N           +   G TPLHLA+  G+  VV+ LL  G 
Sbjct: 48  AKNGHLEIVKLLLEKGADVNA----------RDKDGNTPLHLAARNGNLDVVKLLLKHGA 97

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           D+NA +  G TPLH AA  G  
Sbjct: 98  DVNARDKDGRTPLHLAAKNGHL 119

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 68.1 bits (167), Expect = 4e-16
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 12/81 (14%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            +NG L+ +K LL+       ++NL            T LHLA+  G+  +V+ LL+ G 
Sbjct: 5   AKNGNLELVKLLLEK----GADVNLGDTD--------TALHLAARNGNLEIVKLLLEHGA 52

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
           D+NA +  G+T LH AA  G 
Sbjct: 53  DVNAKDKDGNTALHLAARNGN 73

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 62.4 bits (152), Expect = 2e-13
 Identities = 25/52 (48%), Positives = 33/52 (63%)

Query: 86  SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
           ++   G TPLHLA+  GH  VV+ LL+ G D+NA ++ G TPLH AA  G  
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHL 53

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 57.3 bits (139), Expect = 7e-12
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 10/66 (15%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            RNG L+ +K LL+H  + N          +K   G T LHLA+  G+  +V+ LL+ G 
Sbjct: 36  ARNGNLEIVKLLLEHGADVN----------AKDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Query: 116 DINAVN 121
           DIN  +
Sbjct: 86  DINLKD 91

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 56.1 bits (136), Expect = 7e-12
 Identities = 20/43 (46%), Positives = 29/43 (67%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAF 133
           G T LH A+  G   +V++LL++GVDIN  ++ G+T LH AA 
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAE 43

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 60.8 bits (148), Expect = 8e-12
 Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 48  IHELFLYNCRNGQLDKIKQLLDHC----KENNVE--INLSQKGESKSNLGWTPLHLASYF 101
           +H     N  +  L  +K L+D       +N V   ++       K   G+TPLH A Y 
Sbjct: 145 LHLYLESNKID--LKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYN 202

Query: 102 GHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
            +   V++LLD G + N VN  GDTPLH A 
Sbjct: 203 NNPEFVKYLLDLGANPNLVNKYGDTPLHIAI 233

Length = 422

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 49.9 bits (120), Expect = 1e-09
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINAVND 122
           G TPLHLA+  GH  VV+ LL+ G D+NA + 
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 49.7 bits (119), Expect = 2e-09
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 9/65 (13%)

Query: 67  LLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDT 126
           LL+H   +           +    G TPLHLA+ +G   +V++LL  GVD+N  +  G T
Sbjct: 1   LLEHGPIDLN---------ATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLT 51

Query: 127 PLHKA 131
            L  A
Sbjct: 52  ALDLA 56

Length = 56

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 12/81 (14%)

Query: 51  LFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLH--LASYFGHKSVVE 108
           L LY      LD IK L+        ++N      +K  +G TPLH  L+ +  +  V+ 
Sbjct: 87  LHLYLYNATTLDVIKLLIKA----GADVN------AKDKVGRTPLHVYLSGFNINPKVIR 136

Query: 109 FLLDQGVDINAVNDAGDTPLH 129
            LL +G D+NA++  G TPL 
Sbjct: 137 LLLRKGADVNALDLYGMTPLA 157

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 49.1 bits (116), Expect = 9e-08
 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 19/130 (14%)

Query: 17  THDQVRTRHSSSEEETPNSLSAELNQLS-VKEIHELFLYNCRNGQLDKIKQLLDHCKENN 75
            + ++    ++S  E    L  + +  +   +           G    +K LL       
Sbjct: 41  LYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLAS----G 96

Query: 76  VEINLSQKGESKSNLGWTPLHLASYFGHKS-----VVEFLLDQGV---DINAVNDAGDTP 127
            ++N      +K   G TPLHLA+  G+       V + LL+ G      N  ++ G+TP
Sbjct: 97  ADVN------AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTP 150

Query: 128 LHKAAFVGRE 137
           LH AA  G  
Sbjct: 151 LHWAALNGDA 160

Length = 235

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 73  ENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
              + IN      +++  G TPLH A+ F +      L+  G DINAV+  G+TPL
Sbjct: 245 IAGISIN------ARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPL 294

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 89  NLGWTPLHLASYFG--HKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
            LG TPLH  +      +S+V  LL  G+ INA N  G TPLH AA
Sbjct: 220 MLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAA 265

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 47.5 bits (112), Expect = 3e-07
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 11/80 (13%)

Query: 55  NCRNGQLDKIKQLLDH--CKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD 112
           N   G ++  K LL+     + N   +           G TPLH A+  G   +VE LL+
Sbjct: 118 NPPEGNIEVAKLLLEAGADLDVNNLRDED---------GNTPLHWAALNGDADIVELLLE 168

Query: 113 QGVDINAVNDAGDTPLHKAA 132
            G D N+ N  G T L  AA
Sbjct: 169 AGADPNSRNSYGVTALDPAA 188

Length = 235

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 43.4 bits (103), Expect = 4e-07
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINA 119
           G TPLHLA+  G+  +V+ LL+ G DINA
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 46.2 bits (110), Expect = 9e-07
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 17/93 (18%)

Query: 44  SVKEIHE--LFLYNCR--NGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLH-LA 98
           SV  I E  L+ Y     N  ++++++LL          +++ +GE     G TPLH   
Sbjct: 6   SVDIIMEAALYDYLLNASNVTVEEVRRLL------AAGADVNFRGE----YGKTPLHLYL 55

Query: 99  SYFGHKS--VVEFLLDQGVDINAVNDAGDTPLH 129
            Y   K   +V  LL+ G D+NA    G TPLH
Sbjct: 56  HYSSEKVKDIVRLLLEAGADVNAPERCGFTPLH 88

Length = 471

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 42.2 bits (100), Expect = 1e-06
 Identities = 18/29 (62%), Positives = 22/29 (75%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINA 119
           G TPLHLA+  G+  VV+ LLD+G DINA
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 95  LHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
           LHLA+  G+  +V+ LL++G D+N  +   DT LH AA  G 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGN 40

Length = 91

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 19/41 (46%), Positives = 23/41 (56%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
           G TPLH+A   GH  VV  LL+ G D   ++  G TPL  A
Sbjct: 115 GRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELA 155

Length = 664

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 39.7 bits (93), Expect = 7e-05
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 10/58 (17%)

Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
              RNG LD +K LL H  + N           +   G TPLHLA+  GH  VV+ LL
Sbjct: 79  LAARNGNLDVVKLLLKHGADVNA----------RDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 38.0 bits (89), Expect = 7e-05
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
             +G+L+ +K LL+      V+IN           G T LH+A+  G+  V++ LL
Sbjct: 9   AISGRLELVKYLLEK----GVDINR------TDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 27/115 (23%), Positives = 39/115 (33%), Gaps = 29/115 (25%)

Query: 38  AELNQLSVKEIHELFLYNCRN-GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLH 96
           A +N      I  L     +       ++ LLD+    N+          K++ G   LH
Sbjct: 97  ANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNI----------KNSDGENLLH 146

Query: 97  LASYFGH------------------KSVVEFLLDQGVDINAVNDAGDTPLHKAAF 133
           L                        K+ V +LL  GV IN  +  G TPLH A +
Sbjct: 147 LYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVY 201

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 23/116 (19%)

Query: 46  KEIHELFLYNCRNGQLDKIKQLLDHCKENNVE-------INLSQKGES------------ 86
            E+     Y  + G L+ IK L ++  + N+E       I+++ K               
Sbjct: 122 AELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGA 181

Query: 87  ----KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV 138
               K N G +PLH A+ +G  + ++ L+D G  I      G TPLH A    R  
Sbjct: 182 YANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSA 237

Length = 434

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 37.9 bits (88), Expect = 9e-04
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 78  INLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
           I+++Q  E    LG+ PL+ +    ++ + E+LL  G DIN + + G+T L  A
Sbjct: 249 IDINQVDE----LGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTA 298

Length = 489

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 15/76 (19%)

Query: 62  DKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGH-----KSVVEFLLDQGVD 116
           D +K LLD+      +IN S K  S      TPLH  S   +     K +V+ LL+ G +
Sbjct: 49  DVVKILLDN----GADINSSTKNNS------TPLHYLSNIKYNLTDVKEIVKLLLEYGAN 98

Query: 117 INAVNDAGDTPLHKAA 132
           +NA ++ G TPL  A 
Sbjct: 99  VNAPDNNGITPLLYAI 114

Length = 422

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
KOG4412|consensus	226		99.82
KOG4412|consensus	226		99.81
KOG0509|consensus	600		99.72
KOG0509|consensus	600		99.71
PHA02741	169	hypothetical protein; Provisional	99.7
KOG0512|consensus	228		99.7
PHA02791	284	ankyrin-like protein; Provisional	99.69
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.69
PHA02875	413	ankyrin repeat protein; Provisional	99.68
PHA02884	300	ankyrin repeat protein; Provisional	99.68
PHA02791	284	ankyrin-like protein; Provisional	99.68
PHA02736	154	Viral ankyrin protein; Provisional	99.67
PHA02743	166	Viral ankyrin protein; Provisional	99.67
KOG0195|consensus	448		99.66
KOG0514|consensus	452		99.64
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.64
PHA02741	169	hypothetical protein; Provisional	99.63
PHA02875	413	ankyrin repeat protein; Provisional	99.6
PHA02989	494	ankyrin repeat protein; Provisional	99.6
PHA03095	471	ankyrin-like protein; Provisional	99.59
KOG0514|consensus	452		99.59
KOG4177|consensus	1143		99.59
PHA02878	477	ankyrin repeat protein; Provisional	99.59
PHA02874	434	ankyrin repeat protein; Provisional	99.59
PHA02859	209	ankyrin repeat protein; Provisional	99.59
PHA02795	437	ankyrin-like protein; Provisional	99.58
KOG0510|consensus	929		99.57
PHA02859	209	ankyrin repeat protein; Provisional	99.57
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.57
PHA03100	480	ankyrin repeat protein; Provisional	99.57
PHA02874	434	ankyrin repeat protein; Provisional	99.56
KOG0508|consensus	615		99.56
PHA02884	300	ankyrin repeat protein; Provisional	99.56
KOG4177|consensus	1143		99.56
PHA03100	480	ankyrin repeat protein; Provisional	99.56
PHA02798	489	ankyrin-like protein; Provisional	99.55
PHA02743	166	Viral ankyrin protein; Provisional	99.54
KOG4214|consensus	117		99.53
KOG0502|consensus	296		99.53
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.53
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.52
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.52
PHA03095	471	ankyrin-like protein; Provisional	99.51
PHA02876	682	ankyrin repeat protein; Provisional	99.51
PHA02876	682	ankyrin repeat protein; Provisional	99.51
KOG0510|consensus	929		99.5
PHA02878	477	ankyrin repeat protein; Provisional	99.5
PHA02946	446	ankyin-like protein; Provisional	99.5
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.48
PHA02946	446	ankyin-like protein; Provisional	99.48
KOG0512|consensus	228		99.47
PHA02736	154	Viral ankyrin protein; Provisional	99.47
KOG0515|consensus	752		99.43
KOG4214|consensus	117		99.43
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.43
PHA02798	489	ankyrin-like protein; Provisional	99.42
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.41
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.41
PHA02917	661	ankyrin-like protein; Provisional	99.39
KOG0508|consensus	615		99.37
PHA02795	437	ankyrin-like protein; Provisional	99.36
PHA02989	494	ankyrin repeat protein; Provisional	99.36
KOG1710|consensus	396		99.36
KOG0195|consensus	448		99.34
PHA02730	672	ankyrin-like protein; Provisional	99.34
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.34
KOG0507|consensus	854		99.3
PHA02917	661	ankyrin-like protein; Provisional	99.29
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.29
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.26
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.25
PHA02730	672	ankyrin-like protein; Provisional	99.23
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.19
PHA02792	631	ankyrin-like protein; Provisional	99.18
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.17
KOG0818|consensus	669		99.17
KOG0506|consensus	622		99.16
PF13606	30	Ank_3: Ankyrin repeat	99.14
KOG3676|consensus	782		99.13
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.13
PHA02792	631	ankyrin-like protein; Provisional	99.07
KOG0507|consensus	854		99.05
KOG0505|consensus	527		99.03
KOG0515|consensus	752		99.01
KOG0502|consensus	296		99.0
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.0
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	98.97
KOG1710|consensus	396		98.96
KOG0522|consensus	560		98.95
KOG0505|consensus	527		98.93
KOG3676|consensus	782		98.88
KOG0705|consensus	749		98.77
KOG0782|consensus	1004		98.69
KOG0511|consensus	516		98.63
KOG0783|consensus	1267		98.63
KOG0783|consensus	1267		98.49
KOG0705|consensus	749		98.33
PF13606	30	Ank_3: Ankyrin repeat	98.3
KOG4369|consensus	2131		98.17
KOG2505|consensus	591		98.17
KOG2384|consensus	223		98.13
KOG0521|consensus	785		98.12
KOG4369|consensus	2131		98.1
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.01
KOG0818|consensus	669		97.92
KOG0522|consensus	560		97.89
KOG0782|consensus	1004		97.8
KOG0520|consensus	975		97.65
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.62
KOG0520|consensus	975		97.58
KOG0521|consensus	785		97.38
KOG0506|consensus	622		97.32
KOG0511|consensus	516		97.24
KOG2384|consensus	223		96.91
KOG3609|consensus	822		96.44
KOG3609|consensus	822		96.41
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.56
KOG2505|consensus	591		95.13
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.27
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	89.73
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	88.56

>KOG4412|consensus

Probab=99.82  E-value=7.6e-21  Score=121.73  Aligned_cols=118  Identities=28%  Similarity=0.343  Sum_probs=71.3

Q ss_pred             ccccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccC
Q psy15728          8 IKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESK   87 (139)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~   87 (139)
                      .++..|.+++|.+++.+..+..+.+....+++++.. ...+.|+||||+..|.+++.+.|++.++.++          .+
T Consensus        67 dkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~-tn~G~T~LHyAagK~r~eIaqlLle~ga~i~----------~k  135 (226)
T KOG4412|consen   67 DKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNAT-TNGGQTCLHYAAGKGRLEIAQLLLEKGALIR----------IK  135 (226)
T ss_pred             CccccCCchhhhhhhcCcHHHHHHHhcCCCCCccee-cCCCcceehhhhcCChhhHHHHHHhcCCCCc----------cc
Confidence            345666666666666665555554444444444432 2345666666666666666666666663332          45


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCC
Q psy15728         88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR  136 (139)
Q Consensus        88 d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~  136 (139)
                      |..|.||||-|+..|..+++++|+..|+.+|..|..|+||||.|...|+
T Consensus       136 D~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~  184 (226)
T KOG4412|consen  136 DKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGH  184 (226)
T ss_pred             ccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccC
Confidence            6666677777777777777777776677777777777777776644443

>KOG4412|consensus

Probab=99.81  E-value=3.5e-21  Score=123.27  Aligned_cols=117  Identities=25%  Similarity=0.260  Sum_probs=96.2

Q ss_pred             ccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHh-cccccccccccccCccCC
Q psy15728         10 FAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDH-CKENNVEINLSQKGESKS   88 (139)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~~~~~~~~d   88 (139)
                      +..+.+++|-+++.+..+...-+........+.. +..+++|||.|+..|+-++|+.|+.+ ++++|          ..+
T Consensus        35 dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddk-DdaGWtPlhia~s~g~~evVk~Ll~r~~advn----------a~t  103 (226)
T KOG4412|consen   35 DQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDK-DDAGWTPLHIAASNGNDEVVKELLNRSGADVN----------ATT  103 (226)
T ss_pred             cccCCceeeeeeecCchhHHHHHHhcCCCCCCCc-cccCCchhhhhhhcCcHHHHHHHhcCCCCCcc----------eec
Confidence            4578889999998888877555544333333332 56779999999999999999999988 64444          578


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCc
Q psy15728         89 NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        89 ~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                      +.|.|+||||+..|+.+++++|++.|+.++.+|..|.||||-|+..|.+
T Consensus       104 n~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGkl  152 (226)
T KOG4412|consen  104 NGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKL  152 (226)
T ss_pred             CCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccch
Confidence            8899999999999999999999999999999999999999999998875

>KOG0509|consensus

Probab=99.72  E-value=5.5e-18  Score=125.35  Aligned_cols=81  Identities=40%  Similarity=0.512  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCc
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDT  126 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~t  126 (139)
                      ++-+.||||+.+++++++++|+++++++|..         -...+.||||||+++|+..++.+|+++|||++.+|.+|.+
T Consensus        77 ~g~tlLHWAAiNNrl~v~r~li~~gadvn~~---------gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~  147 (600)
T KOG0509|consen   77 EGVTLLHWAAINNRLDVARYLISHGADVNAI---------GGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLT  147 (600)
T ss_pred             CCccceeHHHHcCcHHHHHHHHHcCCCcccc---------CCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCc
Confidence            4455555555555555555555555444320         1133445555555555555555555555555555555555


Q ss_pred             HHHHHHHhCC
Q psy15728        127 PLHKAAFVGR  136 (139)
Q Consensus       127 pl~~A~~~g~  136 (139)
                      |||.|++.|+
T Consensus       148 ~lHla~~~~~  157 (600)
T KOG0509|consen  148 PLHLAAQFGH  157 (600)
T ss_pred             HHHHHHHhCc
Confidence            5555555444

>KOG0509|consensus

Probab=99.71  E-value=6.4e-18  Score=125.01  Aligned_cols=117  Identities=30%  Similarity=0.409  Sum_probs=97.7

Q ss_pred             ccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCC
Q psy15728         10 FAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSN   89 (139)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~   89 (139)
                      +..|-..+|=++-....+.. +...+.+.+++......+.||||||+++|++.++..|+.+|+++.          .+|.
T Consensus        75 D~~g~tlLHWAAiNNrl~v~-r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt----------~~D~  143 (600)
T KOG0509|consen   75 DREGVTLLHWAAINNRLDVA-RYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPT----------LKDK  143 (600)
T ss_pred             CcCCccceeHHHHcCcHHHH-HHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCc----------eecC
Confidence            44566666666655555443 333455667777777788999999999999999999999997665          4799


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCc
Q psy15728         90 LGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        90 ~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                      +|.+|+|+|+..++..++-+|+..|+++|.+|.+|+|||+||+..|+.
T Consensus       144 ~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~  191 (600)
T KOG0509|consen  144 QGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFA  191 (600)
T ss_pred             CCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhccc
Confidence            999999999999999999999999999999999999999999998864

>PHA02741 hypothetical protein; Provisional

Probab=99.70  E-value=2.4e-17  Score=107.52  Aligned_cols=118  Identities=20%  Similarity=0.186  Sum_probs=93.3

Q ss_pred             cccCCCCcchhhhhhccCCCccCCCc-----hhhHHhhhcCHHHHHHHHHHHHHcCC----HHHHHHHHHhccccccccc
Q psy15728          9 KFAPGGNRTHDQVRTRHSSSEEETPN-----SLSAELNQLSVKEIHELFLYNCRNGQ----LDKIKQLLDHCKENNVEIN   79 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~a~~~g~----~~~~~~ll~~~~~~~~~~~   79 (139)
                      +...+.+.+|.+++.+.....+.+..     ..+...+ ..+..+.|+||+|+..|+    .++++.|+..+++.+    
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in-~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin----   91 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALN-ATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN----   91 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhh-ccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC----
Confidence            45678999999999998766554321     1122333 334567899999999998    578888888775443    


Q ss_pred             ccccCccCCC-CCCcHHHHHHHhCCHHHHHHHHh-CCCCCCcCCCCCCcHHHHHHHhCCc
Q psy15728         80 LSQKGESKSN-LGWTPLHLASYFGHKSVVEFLLD-QGVDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        80 ~~~~~~~~d~-~g~t~l~~a~~~~~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                            .++. .|+||||+|+..++.+++++|+. .|++++.+|..|+||||+|...|+.
T Consensus        92 ------~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~  145 (169)
T PHA02741         92 ------AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDV  145 (169)
T ss_pred             ------CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCH
Confidence                  4564 79999999999999999999997 5999999999999999999998874

>KOG0512|consensus

Probab=99.70  E-value=1.3e-17  Score=106.41  Aligned_cols=88  Identities=33%  Similarity=0.383  Sum_probs=78.2

Q ss_pred             HHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Q psy15728         38 AELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDI  117 (139)
Q Consensus        38 ~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~  117 (139)
                      +......+.++-|+||.|++.|++++++.|+..+++++          .+...||||||.||..++.+|+..|+++|+|+
T Consensus        87 an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~----------a~T~~GWTPLhSAckWnN~~va~~LLqhgaDV  156 (228)
T KOG0512|consen   87 ANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE----------AKTNEGWTPLHSACKWNNFEVAGRLLQHGADV  156 (228)
T ss_pred             cccccccccccccHHHHHHhcCchHHHHHHHHccCCcc----------cccccCccchhhhhcccchhHHHHHHhccCcc
Confidence            34444567788999999999999999999999996554          58899999999999999999999999999999


Q ss_pred             CcCCCCCCcHHHHHHHhC
Q psy15728        118 NAVNDAGDTPLHKAAFVG  135 (139)
Q Consensus       118 ~~~~~~g~tpl~~A~~~g  135 (139)
                      ++......||||+|+-..
T Consensus       157 nA~t~g~ltpLhlaa~~r  174 (228)
T KOG0512|consen  157 NAQTKGLLTPLHLAAGNR  174 (228)
T ss_pred             cccccccchhhHHhhccc
Confidence            999999999999998654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.69  E-value=3.8e-17  Score=114.29  Aligned_cols=117  Identities=15%  Similarity=0.034  Sum_probs=91.7

Q ss_pred             ccccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccC
Q psy15728          8 IKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESK   87 (139)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~   87 (139)
                      .++..|.+++|.++..+.....+.+.. .+...+.   .++.||||+|+..|+.++++.|+..+++.+          .+
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~-~ga~~n~---~d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn----------~~   90 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLN-AGALKNL---LENEFPLHQAATLEDTKIVKILLFSGMDDS----------QF   90 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHH-CcCCCcC---CCCCCHHHHHHHCCCHHHHHHHHHCCCCCC----------CC
Confidence            457789999999998887655443322 1222222   235799999999999999999998875443          57


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCC-CcHHHHHHHhCCcc
Q psy15728         88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAG-DTPLHKAAFVGREV  138 (139)
Q Consensus        88 d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g-~tpl~~A~~~g~~~  138 (139)
                      |..|+||||+|+..++.+++++|++.|++++.++..| .||||+|+..|+.+
T Consensus        91 d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~e  142 (284)
T PHA02791         91 DDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS  142 (284)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHH
Confidence            8889999999999999999999999999999888887 48999999888753

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.69  E-value=2.1e-16  Score=92.57  Aligned_cols=73  Identities=36%  Similarity=0.499  Sum_probs=64.8

Q ss_pred             HHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHH
Q psy15728         52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA  131 (139)
Q Consensus        52 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A  131 (139)
                      ||+|+..|++++++.|+..+.+.             +. |.||||+|+..|+.+++++|++.|++++.++.+|+||||+|
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-------------~~-~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A   66 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-------------NL-GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYA   66 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-------------TS-SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-------------CC-CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHH
Confidence            79999999999999999976322             12 88999999999999999999999999999999999999999


Q ss_pred             HHhCCcc
Q psy15728        132 AFVGREV  138 (139)
Q Consensus       132 ~~~g~~~  138 (139)
                      +..|+.+
T Consensus        67 ~~~~~~~   73 (89)
T PF12796_consen   67 AENGNLE   73 (89)
T ss_dssp             HHTTHHH
T ss_pred             HHcCCHH
Confidence            9988754

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.68  E-value=4.9e-17  Score=119.22  Aligned_cols=82  Identities=24%  Similarity=0.286  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCC
Q psy15728         46 KEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGD  125 (139)
Q Consensus        46 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~  125 (139)
                      ..+.+|||+|+..|+.++++.|+..|++++          .++..|.||||+|+..++.+++++|++.|++++.+|..|.
T Consensus       100 ~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~----------~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~  169 (413)
T PHA02875        100 KDGMTPLHLATILKKLDIMKLLIARGADPD----------IPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGC  169 (413)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhCCCCCC----------CCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC
Confidence            346678888888888888888887775443          4566778888888888888888888888888888888888


Q ss_pred             cHHHHHHHhCCc
Q psy15728        126 TPLHKAAFVGRE  137 (139)
Q Consensus       126 tpl~~A~~~g~~  137 (139)
                      ||||+|+..|+.
T Consensus       170 TpL~~A~~~g~~  181 (413)
T PHA02875        170 TPLIIAMAKGDI  181 (413)
T ss_pred             CHHHHHHHcCCH
Confidence            888888877764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.68  E-value=7.3e-17  Score=113.23  Aligned_cols=118  Identities=19%  Similarity=0.125  Sum_probs=88.8

Q ss_pred             cccCCCCcchhhhhh-ccCCCccCCCchhhHHhhhcC---HHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccC
Q psy15728          9 KFAPGGNRTHDQVRT-RHSSSEEETPNSLSAELNQLS---VKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKG   84 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~   84 (139)
                      ++..+.+.+...+.. +..+. .+.....+++.+...   +..+.||||+|+..++.++++.|++.|++++.        
T Consensus        28 ~d~~~~~~lL~~A~~~~~~ei-vk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~--------   98 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDI-IDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNR--------   98 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHH-HHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCc--------
Confidence            344455544444444 33333 333344455555432   35789999999999999999999999975552        


Q ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCC
Q psy15728         85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR  136 (139)
Q Consensus        85 ~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~  136 (139)
                       ..+..|.||||+|+..++.+++++|+..|++++.+|..|.||||+|+..++
T Consensus        99 -~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~  149 (300)
T PHA02884         99 -YAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICN  149 (300)
T ss_pred             -ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCC
Confidence             124569999999999999999999999999999999999999999988654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.68  E-value=6.1e-17  Score=113.26  Aligned_cols=116  Identities=13%  Similarity=0.015  Sum_probs=77.4

Q ss_pred             ccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCC-
Q psy15728         10 FAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKS-   88 (139)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d-   88 (139)
                      +..|.+++|.++..+..+..+.+.. .+++.+......+.++||+|+..|+.++++.|+..++..            .| 
T Consensus        91 d~~G~TpLh~Aa~~g~~eivk~Ll~-~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~------------~d~  157 (284)
T PHA02791         91 DDKGNTALYYAVDSGNMQTVKLFVK-KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST------------FDL  157 (284)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc------------ccc
Confidence            4456666666666555444333221 122222211111246677777777777777766654211            22 


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcH-HHHHHHhCCcc
Q psy15728         89 NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTP-LHKAAFVGREV  138 (139)
Q Consensus        89 ~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tp-l~~A~~~g~~~  138 (139)
                      ..|.||||+|+..|+.+++++|+++||+++.++..|.|| ||+|+..|+.+
T Consensus       158 ~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e  208 (284)
T PHA02791        158 AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLE  208 (284)
T ss_pred             ccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHH
Confidence            247899999999999999999999999999999999977 99999999865

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.67  E-value=1.8e-17  Score=106.55  Aligned_cols=119  Identities=23%  Similarity=0.186  Sum_probs=89.5

Q ss_pred             CccccCCCCcchhhhhhccCCCccCCCchhh------HHhhhcCHHHHHHHHHHHHHcCCHH---HHHHHHHhccccccc
Q psy15728          7 RIKFAPGGNRTHDQVRTRHSSSEEETPNSLS------AELNQLSVKEIHELFLYNCRNGQLD---KIKQLLDHCKENNVE   77 (139)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~a~~~g~~~---~~~~ll~~~~~~~~~   77 (139)
                      +..+..|.+++|.+++.+...   .+.....      .......+..+.++||+|+..|..+   .++.|+..+++.+  
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~~---~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin--   85 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGVT---DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN--   85 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCHH---HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc--
Confidence            345677999999999987521   1111110      0111123456789999999999864   5778888885443  


Q ss_pred             ccccccCccCC-CCCCcHHHHHHHhCCHHHHHHHHhC-CCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         78 INLSQKGESKS-NLGWTPLHLASYFGHKSVVEFLLDQ-GVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        78 ~~~~~~~~~~d-~~g~t~l~~a~~~~~~~~~~~Ll~~-ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                              .++ ..|+||||+|+..++.+++++|+.. |++++.++..|+||||+|+..|+..
T Consensus        86 --------~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~  140 (154)
T PHA02736         86 --------GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAK  140 (154)
T ss_pred             --------ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHH
Confidence                    466 4799999999999999999999974 9999999999999999999988753

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.67  E-value=6.6e-17  Score=105.19  Aligned_cols=118  Identities=19%  Similarity=0.099  Sum_probs=87.4

Q ss_pred             ccCCCCcchhhhhhccCCCccCCCch---hhHHhhhcCHHHHHHHHHHHHHcCCHHH---HHHHHHhccccccccccccc
Q psy15728         10 FAPGGNRTHDQVRTRHSSSEEETPNS---LSAELNQLSVKEIHELFLYNCRNGQLDK---IKQLLDHCKENNVEINLSQK   83 (139)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~a~~~g~~~~---~~~ll~~~~~~~~~~~~~~~   83 (139)
                      ...+...++.+++.+......++...   .+... ...+..+.++||+|+..|..+.   ++.|+..+++++        
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin--------   87 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADIN--------   87 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCC--------
Confidence            34556678888877765433322211   11222 2234567999999999987554   788888875443        


Q ss_pred             CccCC-CCCCcHHHHHHHhCCHHHHHHHHh-CCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         84 GESKS-NLGWTPLHLASYFGHKSVVEFLLD-QGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        84 ~~~~d-~~g~t~l~~a~~~~~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                        .+| ..|.||||+|+..++.+++++|+. .|++++.++..|+||||+|+..|+..
T Consensus        88 --~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~  142 (166)
T PHA02743         88 --ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRR  142 (166)
T ss_pred             --CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHH
Confidence              466 479999999999999999999995 79999999999999999999988753

>KOG0195|consensus

Probab=99.66  E-value=8.7e-17  Score=110.19  Aligned_cols=89  Identities=33%  Similarity=0.473  Sum_probs=78.6

Q ss_pred             HhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q psy15728         39 ELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDIN  118 (139)
Q Consensus        39 ~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~  118 (139)
                      ......+..+.++||||++.|+..++..||.+|+..|          ..+....||||+|+.+|+-++++.|+++.+|+|
T Consensus        25 hdln~gddhgfsplhwaakegh~aivemll~rgarvn----------~tnmgddtplhlaaahghrdivqkll~~kadvn   94 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVN----------STNMGDDTPLHLAAAHGHRDIVQKLLSRKADVN   94 (448)
T ss_pred             cccccccccCcchhhhhhhcccHHHHHHHHhcccccc----------cccCCCCcchhhhhhcccHHHHHHHHHHhcccc
Confidence            3445566788999999999999999999999997665          345557799999999999999999999999999


Q ss_pred             cCCCCCCcHHHHHHHhCCc
Q psy15728        119 AVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus       119 ~~~~~g~tpl~~A~~~g~~  137 (139)
                      +.+..|.|||||||.-|+.
T Consensus        95 avnehgntplhyacfwgyd  113 (448)
T KOG0195|consen   95 AVNEHGNTPLHYACFWGYD  113 (448)
T ss_pred             hhhccCCCchhhhhhhcHH
Confidence            9999999999999997764

>KOG0514|consensus

Probab=99.64  E-value=1.7e-16  Score=111.33  Aligned_cols=83  Identities=28%  Similarity=0.368  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhC-CCCCCcCCCCC
Q psy15728         46 KEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-GVDINAVNDAG  124 (139)
Q Consensus        46 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~-ga~~~~~~~~g  124 (139)
                      ..++|.|+.|+.+|..++++.||..+++.|          .+|.+|.|+|++|+++||++++++|+.+ ++|+...|.+|
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LLacgAdVN----------iQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~Dg  407 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALLACGADVN----------IQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDG  407 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHHHccCCCc----------cccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCC
Confidence            367899999999999999999999886665          4788899999999999999999999876 88888899999


Q ss_pred             CcHHHHHHHhCCcc
Q psy15728        125 DTPLHKAAFVGREV  138 (139)
Q Consensus       125 ~tpl~~A~~~g~~~  138 (139)
                      .|+|.+|-..||.+
T Consensus       408 STAl~IAleagh~e  421 (452)
T KOG0514|consen  408 STALSIALEAGHRE  421 (452)
T ss_pred             chhhhhHHhcCchH
Confidence            99999998888753

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.64  E-value=4.1e-16  Score=83.69  Aligned_cols=46  Identities=48%  Similarity=0.785  Sum_probs=31.6

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHH
Q psy15728         86 SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA  131 (139)
Q Consensus        86 ~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A  131 (139)
                      .+|..|.||||+|+..|+.+++++|++.|++++.+|.+|+||||+|
T Consensus        11 ~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   11 AQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            6899999999999999999999999999999999999999999997

>PHA02741 hypothetical protein; Provisional

Probab=99.63  E-value=1.4e-15  Score=99.27  Aligned_cols=89  Identities=25%  Similarity=0.297  Sum_probs=72.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhc--ccccccccccccCccCCCCCCcHHHHHHHhCC----HHHHHHHHhCCCCC
Q psy15728         44 SVKEIHELFLYNCRNGQLDKIKQLLDHC--KENNVEINLSQKGESKSNLGWTPLHLASYFGH----KSVVEFLLDQGVDI  117 (139)
Q Consensus        44 ~~~~~~~~l~~a~~~g~~~~~~~ll~~~--~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~----~~~~~~Ll~~ga~~  117 (139)
                      ....+.++||+|+..|+.++++.|+...  ...+  .+    .+.+|..|.||||+|+..++    .+++++|+..|+++
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~g--a~----in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi   90 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHA--AA----LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI   90 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhh--hh----hhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC
Confidence            3456789999999999999999886432  1111  11    22678999999999999998    58899999999999


Q ss_pred             CcCCC-CCCcHHHHHHHhCCcc
Q psy15728        118 NAVND-AGDTPLHKAAFVGREV  138 (139)
Q Consensus       118 ~~~~~-~g~tpl~~A~~~g~~~  138 (139)
                      +.++. .|+||||+|+..++.+
T Consensus        91 n~~~~~~g~TpLh~A~~~~~~~  112 (169)
T PHA02741         91 NAQEMLEGDTALHLAAHRRDHD  112 (169)
T ss_pred             CCCCcCCCCCHHHHHHHcCCHH
Confidence            99985 8999999999988753

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.60  E-value=1.3e-15  Score=111.65  Aligned_cols=119  Identities=22%  Similarity=0.271  Sum_probs=91.1

Q ss_pred             cccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCC
Q psy15728          9 KFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKS   88 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d   88 (139)
                      ....|.+++|.++..+..+..+.+... +...+ .....+.++||.|+..|+.+.++.|+..++...-         ..+
T Consensus        31 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~-~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~---------~~~   99 (413)
T PHA02875         31 EIYDGISPIKLAMKFRDSEAIKLLMKH-GAIPD-VKYPDIESELHDAVEEGDVKAVEELLDLGKFADD---------VFY   99 (413)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCcc-ccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccc---------ccc
Confidence            345688888888887776554433321 11111 1223457899999999999999999987753321         345


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         89 NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        89 ~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      ..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.+
T Consensus       100 ~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~  149 (413)
T PHA02875        100 KDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK  149 (413)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            67999999999999999999999999999999999999999999988753

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.60  E-value=1.5e-15  Score=113.79  Aligned_cols=129  Identities=22%  Similarity=0.159  Sum_probs=89.2

Q ss_pred             cccCCCCcchhhhhhccC-CCccCCCchhhHHhhhcCHHHHHHHHHHHHHc----CCHHHHHHHHHhccccccccc----
Q psy15728          9 KFAPGGNRTHDQVRTRHS-SSEEETPNSLSAELNQLSVKEIHELFLYNCRN----GQLDKIKQLLDHCKENNVEIN----   79 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~----g~~~~~~~ll~~~~~~~~~~~----   79 (139)
                      ++..|.+++|.++..... ...-+.....+.+.+......+.||||.++..    ++.++++.|+..|++.+..-.    
T Consensus       141 ~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t  220 (494)
T PHA02989        141 KNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSES  220 (494)
T ss_pred             cCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCcccc
Confidence            345666677666544321 11112222223333332344567888888765    488888888888876553110    


Q ss_pred             ------------------------ccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhC
Q psy15728         80 ------------------------LSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG  135 (139)
Q Consensus        80 ------------------------~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g  135 (139)
                                              .....+.+|..|+||||+|+..++.+++++|++.||+++.+|..|+||||+|+..|
T Consensus       221 ~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~  300 (494)
T PHA02989        221 VLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHG  300 (494)
T ss_pred             HHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence                                    00123567889999999999999999999999999999999999999999999988


Q ss_pred             Cc
Q psy15728        136 RE  137 (139)
Q Consensus       136 ~~  137 (139)
                      +.
T Consensus       301 ~~  302 (494)
T PHA02989        301 NI  302 (494)
T ss_pred             CH
Confidence            75

>PHA03095 ankyrin-like protein; Provisional

Probab=99.59  E-value=1.9e-15  Score=112.34  Aligned_cols=84  Identities=25%  Similarity=0.250  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHcCCH--HHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCC
Q psy15728         45 VKEIHELFLYNCRNGQL--DKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVND  122 (139)
Q Consensus        45 ~~~~~~~l~~a~~~g~~--~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~  122 (139)
                      +..+.||||+|+..|+.  ..+..++..+.+.+          .+|..|+||||+|+..|+.+++++|++.||+++.++.
T Consensus       219 d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din----------~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~  288 (471)
T PHA03095        219 DMLGNTPLHSMATGSSCKRSLVLPLLIAGISIN----------ARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSS  288 (471)
T ss_pred             CCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCC----------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence            34567888888888764  46666777664332          6788999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHhCCcc
Q psy15728        123 AGDTPLHKAAFVGREV  138 (139)
Q Consensus       123 ~g~tpl~~A~~~g~~~  138 (139)
                      .|+||||+|+..|+..
T Consensus       289 ~g~tpl~~A~~~~~~~  304 (471)
T PHA03095        289 DGNTPLSLMVRNNNGR  304 (471)
T ss_pred             CCCCHHHHHHHhCCHH
Confidence            9999999999988753

>KOG0514|consensus

Probab=99.59  E-value=2.6e-16  Score=110.42  Aligned_cols=52  Identities=38%  Similarity=0.427  Sum_probs=49.1

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        87 ~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      ....|.|+|++|+.+|+.++++.|+..|||+|.+|.+|.|+|.+|+.+||++
T Consensus       336 AsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkE  387 (452)
T KOG0514|consen  336 ASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKE  387 (452)
T ss_pred             hhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHH
Confidence            3566999999999999999999999999999999999999999999999975

>KOG4177|consensus

Probab=99.59  E-value=3e-15  Score=118.44  Aligned_cols=81  Identities=37%  Similarity=0.541  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCc
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDT  126 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~t  126 (139)
                      .+.||||.|+.+|+++.|+.||+++++.+          .+|+.|+||||.|+.+|+.+|+.+|+++||++|..+.+|.|
T Consensus       539 r~~TpLh~A~~~g~v~~VkfLLe~gAdv~----------ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~T  608 (1143)
T KOG4177|consen  539 RGYTPLHVAVHYGNVDLVKFLLEHGADVN----------AKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFT  608 (1143)
T ss_pred             cccchHHHHHhcCCchHHHHhhhCCcccc----------ccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcc
Confidence            45799999999999999999999996555          57899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCc
Q psy15728        127 PLHKAAFVGRE  137 (139)
Q Consensus       127 pl~~A~~~g~~  137 (139)
                      ||++|.+.|+.
T Consensus       609 pL~iA~~lg~~  619 (1143)
T KOG4177|consen  609 PLHIAVRLGYL  619 (1143)
T ss_pred             hhHHHHHhccc
Confidence            99999998875

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.59  E-value=4.1e-15  Score=111.01  Aligned_cols=77  Identities=26%  Similarity=0.317  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcH
Q psy15728         48 IHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTP  127 (139)
Q Consensus        48 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tp  127 (139)
                      +.+|||+|+..|+.++++.|+..|++++          ..|..|.||||+|+..++.+++++|++.|++++.+|..|+||
T Consensus       168 g~tpLh~A~~~~~~~iv~~Ll~~gad~n----------~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~Tp  237 (477)
T PHA02878        168 GNTALHYATENKDQRLTELLLSYGANVN----------IPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTP  237 (477)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHCCCCCC----------CcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            7899999999999999999999885443          578889999999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q psy15728        128 LHKAAFV  134 (139)
Q Consensus       128 l~~A~~~  134 (139)
                      ||+|+..
T Consensus       238 Lh~A~~~  244 (477)
T PHA02878        238 LHISVGY  244 (477)
T ss_pred             HHHHHHh
Confidence            9999875

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.59  E-value=4.6e-15  Score=109.60  Aligned_cols=83  Identities=28%  Similarity=0.519  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCC
Q psy15728         46 KEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGD  125 (139)
Q Consensus        46 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~  125 (139)
                      ..+.|+||+|+..|+.++++.|+..+++++          .+|..|.||||+|+..++.+++++|++.|++++.++..|.
T Consensus       122 ~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n----------~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~  191 (434)
T PHA02874        122 AELKTFLHYAIKKGDLESIKMLFEYGADVN----------IEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGE  191 (434)
T ss_pred             CCCccHHHHHHHCCCHHHHHHHHhCCCCCC----------CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCC
Confidence            456788888888888888888888775443          4677788888888888888888888888888888888888


Q ss_pred             cHHHHHHHhCCcc
Q psy15728        126 TPLHKAAFVGREV  138 (139)
Q Consensus       126 tpl~~A~~~g~~~  138 (139)
                      ||||+|+..|+..
T Consensus       192 tpL~~A~~~g~~~  204 (434)
T PHA02874        192 SPLHNAAEYGDYA  204 (434)
T ss_pred             CHHHHHHHcCCHH
Confidence            8888888877653

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.59  E-value=2.3e-15  Score=101.37  Aligned_cols=73  Identities=16%  Similarity=0.114  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHc---CCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHH--hCCHHHHHHHHhCCCCCCcCC
Q psy15728         47 EIHELFLYNCRN---GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASY--FGHKSVVEFLLDQGVDINAVN  121 (139)
Q Consensus        47 ~~~~~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~--~~~~~~~~~Ll~~ga~~~~~~  121 (139)
                      .+.||||+|+..   ++.++++.|+..+++++          .+|..|.||||+|+.  .++.+++++|++.|++++.+|
T Consensus        86 ~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin----------~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d  155 (209)
T PHA02859         86 NNLSALHHYLSFNKNVEPEILKILIDSGSSIT----------EEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKD  155 (209)
T ss_pred             CCCCHHHHHHHhCccccHHHHHHHHHCCCCCC----------CcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccc
Confidence            344555554432   24455555554443222          344445555554433  234455555555555555555


Q ss_pred             CCCCcHHH
Q psy15728        122 DAGDTPLH  129 (139)
Q Consensus       122 ~~g~tpl~  129 (139)
                      ..|.||||
T Consensus       156 ~~g~t~Lh  163 (209)
T PHA02859        156 FDNNNILY  163 (209)
T ss_pred             CCCCcHHH
Confidence            55555555

>PHA02795 ankyrin-like protein; Provisional

Probab=99.58  E-value=3.5e-15  Score=108.94  Aligned_cols=79  Identities=27%  Similarity=0.194  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcH
Q psy15728         48 IHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTP  127 (139)
Q Consensus        48 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tp  127 (139)
                      +.+++|.++..+..++++.|+..|++.+          .+|..|.||||+|+..|+.+++++|++.||+++.++..|.||
T Consensus       188 ~~t~l~~a~~~~~~eIve~LIs~GADIN----------~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~Tp  257 (437)
T PHA02795        188 QYTRGFLVDEPTVLEIYKLCIPYIEDIN----------QLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTC  257 (437)
T ss_pred             ccchhHHHHhcCHHHHHHHHHhCcCCcC----------cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            3456677777777777777777764443          689999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCC
Q psy15728        128 LHKAAFVGR  136 (139)
Q Consensus       128 l~~A~~~g~  136 (139)
                      ||+|+..|+
T Consensus       258 Lh~Aa~~g~  266 (437)
T PHA02795        258 LDVAVDRGS  266 (437)
T ss_pred             HHHHHHcCC
Confidence            999999885

>KOG0510|consensus

Probab=99.57  E-value=1.2e-15  Score=115.84  Aligned_cols=121  Identities=26%  Similarity=0.345  Sum_probs=95.1

Q ss_pred             cccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCC
Q psy15728          9 KFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKS   88 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d   88 (139)
                      .+..|.+++|++++.|.......+. ..+.+.... .++..+|||.|+.+|.+.++++||. ..+.   .    ..+..|
T Consensus       269 ~d~dg~tpLH~a~r~G~~~svd~Ll-~~Ga~I~~k-n~d~~spLH~AA~yg~~ntv~rLL~-~~~~---r----llne~D  338 (929)
T KOG0510|consen  269 EDNDGCTPLHYAARQGGPESVDNLL-GFGASINSK-NKDEESPLHFAAIYGRINTVERLLQ-ESDT---R----LLNESD  338 (929)
T ss_pred             ccccCCchHHHHHHcCChhHHHHHH-HcCCccccc-CCCCCCchHHHHHcccHHHHHHHHh-CcCc---c----cccccc
Confidence            4678899999999999876643322 233333332 3677899999999999999999998 2111   1    122678


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCC---cCCCCCCcHHHHHHHhCCccC
Q psy15728         89 NLGWTPLHLASYFGHKSVVEFLLDQGVDIN---AVNDAGDTPLHKAAFVGREVG  139 (139)
Q Consensus        89 ~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~---~~~~~g~tpl~~A~~~g~~~c  139 (139)
                      -.|.||||.|+..||.++++.|+..||+..   ..|.+|.||||.|+..|+..|
T Consensus       339 ~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~a  392 (929)
T KOG0510|consen  339 LHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSA  392 (929)
T ss_pred             ccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHH
Confidence            889999999999999999999999999987   459999999999999998754

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.57  E-value=6.2e-15  Score=99.23  Aligned_cols=109  Identities=15%  Similarity=0.117  Sum_probs=86.0

Q ss_pred             cCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHc--CCHHHHHHHHHhcccccccccccccCccCC
Q psy15728         11 APGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRN--GQLDKIKQLLDHCKENNVEINLSQKGESKS   88 (139)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~--g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d   88 (139)
                      ....++++.+++.+.....+.+...    . ......+.||||+|+..  ++.++++.|++.+++++          .++
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~----~-n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn----------~~~   83 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF----V-NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVN----------FKT   83 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh----h-hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCC----------ccC
Confidence            4456788888888887766655421    2 22345678999999975  48999999999986554          354


Q ss_pred             -CCCCcHHHHHHHh---CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHh
Q psy15728         89 -NLGWTPLHLASYF---GHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFV  134 (139)
Q Consensus        89 -~~g~t~l~~a~~~---~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~  134 (139)
                       ..|.||||+|+..   ++.+++++|+++|++++.+|..|.||||+|+..
T Consensus        84 ~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~  133 (209)
T PHA02859         84 RDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCN  133 (209)
T ss_pred             CCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh
Confidence             4799999998764   479999999999999999999999999998763

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.57  E-value=4.2e-15  Score=79.21  Aligned_cols=49  Identities=47%  Similarity=0.653  Sum_probs=40.7

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCccC
Q psy15728         91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREVG  139 (139)
Q Consensus        91 g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~c  139 (139)
                      |.||||+|+..|+.+++++|++.|++++.+|.+|+||||+|+..|+..|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~   49 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDI   49 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHH
Confidence            6899999999999999999999999999999999999999999998753

...

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.57  E-value=9.4e-15  Score=108.95  Aligned_cols=79  Identities=33%  Similarity=0.452  Sum_probs=61.2

Q ss_pred             HHHHHHHHHcCC--HHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCc
Q psy15728         49 HELFLYNCRNGQ--LDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDT  126 (139)
Q Consensus        49 ~~~l~~a~~~g~--~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~t  126 (139)
                      .++||.|+..|+  .++++.|+..|++          .+.+|..|.||||+|+..++.+++++|++.|++++.++..|.|
T Consensus       216 ~t~l~~a~~~~~~~~~iv~~Ll~~g~d----------in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~t  285 (480)
T PHA03100        216 ETPLHIAACYNEITLEVVNYLLSYGVP----------INIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDT  285 (480)
T ss_pred             HhHHHHHHHhCcCcHHHHHHHHHcCCC----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCc
Confidence            444444444444  4444444444422          2367889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCc
Q psy15728        127 PLHKAAFVGRE  137 (139)
Q Consensus       127 pl~~A~~~g~~  137 (139)
                      ||++|+..++.
T Consensus       286 pl~~A~~~~~~  296 (480)
T PHA03100        286 PLHIAILNNNK  296 (480)
T ss_pred             HHHHHHHhCCH
Confidence            99999988764

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.56  E-value=5.8e-15  Score=109.06  Aligned_cols=116  Identities=27%  Similarity=0.267  Sum_probs=90.7

Q ss_pred             cccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCC
Q psy15728          9 KFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKS   88 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d   88 (139)
                      .+..|.+++|.++..+..+..+.+.. .+.+.+. .+..+.+|||+|+..|+.++++.|+..++..+          ..+
T Consensus       120 ~~~~g~T~Lh~A~~~~~~~~v~~Ll~-~gad~n~-~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n----------~~~  187 (434)
T PHA02874        120 KDAELKTFLHYAIKKGDLESIKMLFE-YGADVNI-EDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN----------VKD  187 (434)
T ss_pred             CCCCCccHHHHHHHCCCHHHHHHHHh-CCCCCCC-cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC----------CCC
Confidence            45678889999998877655443322 2223322 34567899999999999999999999885443          468


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCC
Q psy15728         89 NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR  136 (139)
Q Consensus        89 ~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~  136 (139)
                      ..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++
T Consensus       188 ~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~  235 (434)
T PHA02874        188 NNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR  235 (434)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh
Confidence            889999999999999999999999999988888888888888877654

>KOG0508|consensus

Probab=99.56  E-value=5.5e-16  Score=111.97  Aligned_cols=114  Identities=26%  Similarity=0.388  Sum_probs=88.7

Q ss_pred             CCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCC
Q psy15728         12 PGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLG   91 (139)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g   91 (139)
                      .|..++-.++..+..+..+ +....+.+++. ......|||..||.-|+++++++|++++++++          ..|..|
T Consensus        83 egappLWaAsaAGHl~vVk-~L~~~ga~VN~-tT~TNStPLraACfDG~leivKyLvE~gad~~----------IanrhG  150 (615)
T KOG0508|consen   83 EGAPPLWAASAAGHLEVVK-LLLRRGASVND-TTRTNSTPLRAACFDGHLEIVKYLVEHGADPE----------IANRHG  150 (615)
T ss_pred             CCCchhhHHhccCcHHHHH-HHHHhcCcccc-ccccCCccHHHHHhcchhHHHHHHHHcCCCCc----------ccccCC
Confidence            3444445555555554433 33334444444 33344689999999999999999999986665          478899


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCc
Q psy15728         92 WTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        92 ~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                      .|+||+|+..|+.+++++|++.|||+|.++..|.|+||.|+..|+.
T Consensus       151 hTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~v  196 (615)
T KOG0508|consen  151 HTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSV  196 (615)
T ss_pred             CeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccH
Confidence            9999999999999999999999999999999999999999998875

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.56  E-value=2.5e-14  Score=100.58  Aligned_cols=85  Identities=20%  Similarity=0.221  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcC-CCCCCc
Q psy15728         48 IHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAV-NDAGDT  126 (139)
Q Consensus        48 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~-~~~g~t  126 (139)
                      ..++||.|+..|+.++++.|+..|++++...      ...+..|.||||+|+..++.+++++|++.||+++.+ +..|.|
T Consensus        33 ~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~------~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~T  106 (300)
T PHA02884         33 IANILYSSIKFHYTDIIDAILKLGADPEAPF------PLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT  106 (300)
T ss_pred             CCHHHHHHHHcCCHHHHHHHHHCCCCccccC------cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCC
Confidence            3677888888999999999999997665310      012467999999999999999999999999999986 567999


Q ss_pred             HHHHHHHhCCcc
Q psy15728        127 PLHKAAFVGREV  138 (139)
Q Consensus       127 pl~~A~~~g~~~  138 (139)
                      |||+|+..|+.+
T Consensus       107 pLh~Aa~~~~~e  118 (300)
T PHA02884        107 PLYISVLHGCLK  118 (300)
T ss_pred             HHHHHHHcCCHH
Confidence            999999988764

>KOG4177|consensus

Probab=99.56  E-value=4.7e-15  Score=117.40  Aligned_cols=118  Identities=28%  Similarity=0.382  Sum_probs=81.7

Q ss_pred             ccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCC
Q psy15728         10 FAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSN   89 (139)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~   89 (139)
                      +..|.+.+|.++..+..+...-+....  ....+..+.+.+++|.+...+.+..+..++.+++      +++    .++.
T Consensus       471 s~~G~T~Lhlaaq~Gh~~~~~llle~~--~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga------~v~----~~~~  538 (1143)
T KOG4177|consen  471 SKQGFTPLHLAAQEGHTEVVQLLLEGG--ANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGA------NVD----LRTG  538 (1143)
T ss_pred             ccccCcchhhhhccCCchHHHHhhhcC--CccCccchhccchhhhhhhhhhHHHHHHHhhcCC------cee----hhcc
Confidence            445555555555555544433332222  1223333444555666666666666555555552      222    6788


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCccC
Q psy15728         90 LGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREVG  139 (139)
Q Consensus        90 ~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~c  139 (139)
                      ++.||||+|+.+|+..+|++|+++||+++++++.|+||||.||..|+..|
T Consensus       539 r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i  588 (1143)
T KOG4177|consen  539 RGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDI  588 (1143)
T ss_pred             cccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHH
Confidence            89999999999999999999999999999999999999999999998765

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.56  E-value=4.9e-15  Score=110.47  Aligned_cols=118  Identities=27%  Similarity=0.288  Sum_probs=88.3

Q ss_pred             cccCCCCcchhhhhhc--cCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCcc
Q psy15728          9 KFAPGGNRTHDQVRTR--HSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGES   86 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~   86 (139)
                      ....|.+++|.++..+  .....+.+ ...+.+.+.. ...+.||||+|+..|+.++++.|+..|++.+          .
T Consensus       137 ~~~~g~t~L~~A~~~~~~~~~iv~~L-l~~g~din~~-d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~----------~  204 (480)
T PHA03100        137 KNSDGENLLHLYLESNKIDLKILKLL-IDKGVDINAK-NRYGYTPLHIAVEKGNIDVIKFLLDNGADIN----------A  204 (480)
T ss_pred             cCCCCCcHHHHHHHcCCChHHHHHHH-HHCCCCcccc-cCCCCCHHHHHHHhCCHHHHHHHHHcCCCcc----------C
Confidence            3456677777777666  33322222 2223333332 2367889999999999999999988885443          3


Q ss_pred             CCCCC------CcHHHHHHHhCC--HHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         87 KSNLG------WTPLHLASYFGH--KSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        87 ~d~~g------~t~l~~a~~~~~--~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      .+..|      .||||+|+..++  .+++++|++.|++++.+|..|.||||+|+..|+.+
T Consensus       205 ~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~  264 (480)
T PHA03100        205 GDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPE  264 (480)
T ss_pred             CCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            55666      899999999999  99999999999999999999999999999988753

>PHA02798 ankyrin-like protein; Provisional

Probab=99.55  E-value=7e-15  Score=110.10  Aligned_cols=54  Identities=28%  Similarity=0.424  Sum_probs=50.2

Q ss_pred             CccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCc
Q psy15728         84 GESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        84 ~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                      .+.+|..|.||||+|+..++.+++++|++.||+++.++..|+||||+|+..|+.
T Consensus       251 vN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~  304 (489)
T PHA02798        251 INQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESK  304 (489)
T ss_pred             CCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcH
Confidence            346788999999999999999999999999999999999999999999988764

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.54  E-value=2.1e-14  Score=93.40  Aligned_cols=81  Identities=25%  Similarity=0.416  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHH----HHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHH---HHHHHhCCCCCCc
Q psy15728         47 EIHELFLYNCRNGQLDKIKQ----LLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV---VEFLLDQGVDINA  119 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~----ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~---~~~Ll~~ga~~~~  119 (139)
                      .+.+.||+|++.|++..+..    |+..+...          +.+|..|+||||+|+..++.+.   +++|++.|++++.
T Consensus        19 ~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~----------~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743         19 DEQNTFLRICRTGNIYELMEVAPFISGDGHLL----------HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh----------hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            44578999999999855544    44444221          2578899999999999988654   8999999999999


Q ss_pred             CC-CCCCcHHHHHHHhCCc
Q psy15728        120 VN-DAGDTPLHKAAFVGRE  137 (139)
Q Consensus       120 ~~-~~g~tpl~~A~~~g~~  137 (139)
                      ++ ..|+||||+|+..|+.
T Consensus        89 ~d~~~g~TpLh~A~~~g~~  107 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNY  107 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCH
Confidence            98 5899999999998875

>KOG4214|consensus

Probab=99.53  E-value=1.6e-14  Score=83.35  Aligned_cols=79  Identities=33%  Similarity=0.521  Sum_probs=69.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHH
Q psy15728         50 ELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLH  129 (139)
Q Consensus        50 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~  129 (139)
                      ..+.|++++|.++.|++.+..+.+.|           .-..|++|||+|+-+|+.+++.||+..||+++.+|..|-|||-
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn-----------~~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLL   72 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVN-----------EIYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLL   72 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHH-----------HHhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHH
Confidence            35788999999999999998873222           2345899999999999999999999999999999999999999


Q ss_pred             HHHHhCCccC
Q psy15728        130 KAAFVGREVG  139 (139)
Q Consensus       130 ~A~~~g~~~c  139 (139)
                      -|+..||..|
T Consensus        73 sAvwEGH~~c   82 (117)
T KOG4214|consen   73 SAVWEGHRDC   82 (117)
T ss_pred             HHHHHhhHHH
Confidence            9999999877

>KOG0502|consensus

Probab=99.53  E-value=8.1e-15  Score=96.97  Aligned_cols=92  Identities=21%  Similarity=0.218  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccccccc-----------------------ccccccCccCCCCCCcHHHHHHHh
Q psy15728         45 VKEIHELFLYNCRNGQLDKIKQLLDHCKENNVE-----------------------INLSQKGESKSNLGWTPLHLASYF  101 (139)
Q Consensus        45 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~-----------------------~~~~~~~~~~d~~g~t~l~~a~~~  101 (139)
                      ++.|.|||+||+.+|+++.++.||..|+++.+-                       ...+..++..|++|.|||.+|++.
T Consensus       157 De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrg  236 (296)
T KOG0502|consen  157 DEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRG  236 (296)
T ss_pred             cccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecC
Confidence            567899999999999999999999998877641                       122233357788888999999988


Q ss_pred             CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCC
Q psy15728        102 GHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR  136 (139)
Q Consensus       102 ~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~  136 (139)
                      ++.+|++.|+..||+++..+..|++++..|+..|+
T Consensus       237 nhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGy  271 (296)
T KOG0502|consen  237 NHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGY  271 (296)
T ss_pred             ChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhh
Confidence            88999999998899988888889999888888775

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.53  E-value=3.6e-15  Score=87.30  Aligned_cols=64  Identities=34%  Similarity=0.521  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCC
Q psy15728         48 IHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVN  121 (139)
Q Consensus        48 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  121 (139)
                      +.++||+|+..|+.++++.|++.+++++          .+|..|+||||+|+..++.+++++|+++|++++.+|
T Consensus        26 ~~~~l~~A~~~~~~~~~~~Ll~~g~~~~----------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   26 GNTALHYAAENGNLEIVKLLLENGADIN----------SQDKNGNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             SSBHHHHHHHTTTHHHHHHHHHTTTCTT-----------BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhccccc----------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            5579999999999999999999885444          578889999999999999999999999999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.52  E-value=4.5e-14  Score=111.41  Aligned_cols=82  Identities=22%  Similarity=0.312  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCc
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDT  126 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~t  126 (139)
                      ...++|+.|+..|+.+.++.|+..|.+++          ..|..|.||||+|+..|+.+++++|+++|++++.+|.+|+|
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n----------~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~T  593 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDPD----------IGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNT  593 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCCC----------CCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCC
Confidence            34688999999999999999999885443          57899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCcc
Q psy15728        127 PLHKAAFVGREV  138 (139)
Q Consensus       127 pl~~A~~~g~~~  138 (139)
                      |||+|+..|+..
T Consensus       594 pL~~A~~~g~~~  605 (823)
T PLN03192        594 ALWNAISAKHHK  605 (823)
T ss_pred             HHHHHHHhCCHH
Confidence            999999998854

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.52  E-value=3e-14  Score=112.37  Aligned_cols=113  Identities=18%  Similarity=0.149  Sum_probs=77.4

Q ss_pred             CCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCc
Q psy15728         14 GNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWT   93 (139)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t   93 (139)
                      ...++.++..+.....+.+. ..+.+.+ ..+..+.|+||+|+..|+.++++.|+..+++.+          .+|..|+|
T Consensus       526 ~~~L~~Aa~~g~~~~l~~Ll-~~G~d~n-~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin----------~~d~~G~T  593 (823)
T PLN03192        526 ASNLLTVASTGNAALLEELL-KAKLDPD-IGDSKGRTPLHIAASKGYEDCVLVLLKHACNVH----------IRDANGNT  593 (823)
T ss_pred             hhHHHHHHHcCCHHHHHHHH-HCCCCCC-CCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCC----------CcCCCCCC
Confidence            44556666666544333322 1222222 234466788888888888888888887774333          45666777


Q ss_pred             HHH-------------------------------HHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         94 PLH-------------------------------LASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        94 ~l~-------------------------------~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      |||                               .|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus       594 pL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~  669 (823)
T PLN03192        594 ALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVD  669 (823)
T ss_pred             HHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            766                               455556666777788999999999999999999999998764

>PHA03095 ankyrin-like protein; Provisional

Probab=99.51  E-value=2.2e-14  Score=106.69  Aligned_cols=115  Identities=24%  Similarity=0.237  Sum_probs=81.7

Q ss_pred             cccCCCCcchhhhhhc---cCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcC-CHHHHHHHHHhcccccccccccccC
Q psy15728          9 KFAPGGNRTHDQVRTR---HSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNG-QLDKIKQLLDHCKENNVEINLSQKG   84 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g-~~~~~~~ll~~~~~~~~~~~~~~~~   84 (139)
                      +...|.+++|.++..+   .... -+.....+.+.+... ..+.||||+|+..| ..++++.|+..|++++         
T Consensus        43 ~~~~g~t~Lh~a~~~~~~~~~~i-v~~Ll~~Gadin~~~-~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in---------  111 (471)
T PHA03095         43 RGEYGKTPLHLYLHYSSEKVKDI-VRLLLEAGADVNAPE-RCGFTPLHLYLYNATTLDVIKLLIKAGADVN---------  111 (471)
T ss_pred             CCCCCCCHHHHHHHhcCCChHHH-HHHHHHCCCCCCCCC-CCCCCHHHHHHHcCCcHHHHHHHHHcCCCCC---------
Confidence            3456778888888777   2221 112222333343333 36788999999888 5888888888875443         


Q ss_pred             ccCCCCCCcHHHHHH--HhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhC
Q psy15728         85 ESKSNLGWTPLHLAS--YFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG  135 (139)
Q Consensus        85 ~~~d~~g~t~l~~a~--~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g  135 (139)
                       .+|..|.||||+|+  ..++.+++++|++.|++++.+|..|.||||+|+..+
T Consensus       112 -~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~  163 (471)
T PHA03095        112 -AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSR  163 (471)
T ss_pred             -CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence             56778889999888  455788888898889998888888899998887755

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.51  E-value=2.8e-14  Score=110.62  Aligned_cols=91  Identities=29%  Similarity=0.243  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccccccc------------------------ccccccCccCCCCCCcHHHHHHH
Q psy15728         45 VKEIHELFLYNCRNGQLDKIKQLLDHCKENNVE------------------------INLSQKGESKSNLGWTPLHLASY  100 (139)
Q Consensus        45 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~------------------------~~~~~~~~~~d~~g~t~l~~a~~  100 (139)
                      +..+.||||+|+..|+.++++.|+..+++.+..                        +..+...+.+|..|+||||+|+.
T Consensus       372 d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~  451 (682)
T PHA02876        372 DYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACK  451 (682)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHH
Confidence            345789999999999999999999887655420                        00012223566667777777766


Q ss_pred             hC-CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhC
Q psy15728        101 FG-HKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG  135 (139)
Q Consensus       101 ~~-~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g  135 (139)
                      .+ +.+++++|++.|++++.+|..|.|||++|+..+
T Consensus       452 ~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~  487 (682)
T PHA02876        452 KNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH  487 (682)
T ss_pred             hCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC
Confidence            55 466777777777777777777777777766543

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.51  E-value=1.8e-14  Score=111.76  Aligned_cols=79  Identities=24%  Similarity=0.236  Sum_probs=68.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHH
Q psy15728         49 HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL  128 (139)
Q Consensus        49 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl  128 (139)
                      .++++.++..|+.++++.|+..|++++          .+|..|.||||+|+..|+.+++++|++.|++++..+..|.|||
T Consensus       146 ~~~l~~~i~~~~~~i~k~Ll~~Gadvn----------~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L  215 (682)
T PHA02876        146 MKLIKERIQQDELLIAEMLLEGGADVN----------AKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVL  215 (682)
T ss_pred             hHHHHHHHHCCcHHHHHHHHhCCCCCC----------CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHH
Confidence            345556667788888888888885443          5788899999999999999999999999999999999999999


Q ss_pred             HHHHHhCCc
Q psy15728        129 HKAAFVGRE  137 (139)
Q Consensus       129 ~~A~~~g~~  137 (139)
                      |+|+..|+.
T Consensus       216 ~~A~~~~~~  224 (682)
T PHA02876        216 ECAVDSKNI  224 (682)
T ss_pred             HHHHHcCCH
Confidence            999998874

>KOG0510|consensus

Probab=99.50  E-value=2.4e-14  Score=109.02  Aligned_cols=129  Identities=24%  Similarity=0.253  Sum_probs=94.5

Q ss_pred             ccCCCCcchhhhhhccCCCccCCCchhhH---HhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhccccccccc------c
Q psy15728         10 FAPGGNRTHDQVRTRHSSSEEETPNSLSA---ELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEIN------L   80 (139)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~------~   80 (139)
                      +..+..+.|.+++.+..+.-+-.....+.   ..-......+.+|||.|+..|+.++++.+|..+....- +.      .
T Consensus       184 ~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~-~~~~~~~q~  262 (929)
T KOG0510|consen  184 DIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIAD-VQLDAMQQE  262 (929)
T ss_pred             cCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccch-hhhHHHHHH
Confidence            34555566788877776554333331111   11112234568999999999999999999988753321 11      0


Q ss_pred             cccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCccC
Q psy15728         81 SQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREVG  139 (139)
Q Consensus        81 ~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~c  139 (139)
                      ..-++..|++|.||||+|+..|+.++++.|+..|++++.++.++.||||.|+..|++.|
T Consensus       263 kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~nt  321 (929)
T KOG0510|consen  263 KELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINT  321 (929)
T ss_pred             HHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHH
Confidence            01124679999999999999999999999999999999999999999999999998754

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.50  E-value=2.7e-14  Score=106.63  Aligned_cols=107  Identities=22%  Similarity=0.327  Sum_probs=64.3

Q ss_pred             CCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCC
Q psy15728         13 GGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGW   92 (139)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~   92 (139)
                      |.+++|.++..+..+..+.+.. .+.+.+. .+..+.||||.|+..|+.++++.|+..|++.+          .+|..|.
T Consensus       168 g~tpLh~A~~~~~~~iv~~Ll~-~gad~n~-~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in----------~~d~~g~  235 (477)
T PHA02878        168 GNTALHYATENKDQRLTELLLS-YGANVNI-PDKTNNSPLHHAVKHYNKPIVHILLENGASTD----------ARDKCGN  235 (477)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHH-CCCCCCC-cCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC----------CCCCCCC
Confidence            7777787777665544333222 2222222 33456777777777777777777777764433          3566666


Q ss_pred             cHHHHHHHh-CCHHHHHHHHhCCCCCCcCCC-CCCcHHHHH
Q psy15728         93 TPLHLASYF-GHKSVVEFLLDQGVDINAVND-AGDTPLHKA  131 (139)
Q Consensus        93 t~l~~a~~~-~~~~~~~~Ll~~ga~~~~~~~-~g~tpl~~A  131 (139)
                      ||||+|+.. ++.+++++|++.|++++.++. .|.||||+|
T Consensus       236 TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A  276 (477)
T PHA02878        236 TPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS  276 (477)
T ss_pred             CHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH
Confidence            666666654 456666666666666665554 456666655

>PHA02946 ankyin-like protein; Provisional

Probab=99.50  E-value=3.1e-14  Score=105.50  Aligned_cols=48  Identities=19%  Similarity=0.354  Sum_probs=22.9

Q ss_pred             CCCCCCcHHHHHHHhCC--HHHHHHHHhCCCCCCcCCCCCCcHHHHHHHh
Q psy15728         87 KSNLGWTPLHLASYFGH--KSVVEFLLDQGVDINAVNDAGDTPLHKAAFV  134 (139)
Q Consensus        87 ~d~~g~t~l~~a~~~~~--~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~  134 (139)
                      +|..|+||||+|+..++  .+++++|++.|++++.+|.+|+||||+|+..
T Consensus       169 ~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~  218 (446)
T PHA02946        169 VDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSK  218 (446)
T ss_pred             cCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            34444555554443322  3444555555555555555555555555443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.48  E-value=1.8e-13  Score=105.78  Aligned_cols=80  Identities=30%  Similarity=0.348  Sum_probs=72.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHH
Q psy15728         49 HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL  128 (139)
Q Consensus        49 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl  128 (139)
                      ...|+.|+..|+.+.++.|+..+++.+          .+|..|+||||+|+..|+.+++++|++.|++++.+|..|.|||
T Consensus        83 ~~~L~~aa~~G~~~~vk~LL~~Gadin----------~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpL  152 (664)
T PTZ00322         83 TVELCQLAASGDAVGARILLTGGADPN----------CRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPL  152 (664)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCCC----------CcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            456899999999999999999885443          5788999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCcc
Q psy15728        129 HKAAFVGREV  138 (139)
Q Consensus       129 ~~A~~~g~~~  138 (139)
                      |+|+..|+..
T Consensus       153 h~A~~~g~~~  162 (664)
T PTZ00322        153 ELAEENGFRE  162 (664)
T ss_pred             HHHHHCCcHH
Confidence            9999998753

>PHA02946 ankyin-like protein; Provisional

Probab=99.48  E-value=2.9e-13  Score=100.35  Aligned_cols=78  Identities=26%  Similarity=0.330  Sum_probs=66.7

Q ss_pred             HHHHHHHHH--cCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCc
Q psy15728         49 HELFLYNCR--NGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDT  126 (139)
Q Consensus        49 ~~~l~~a~~--~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~t  126 (139)
                      .++||.++.  ..+.++++.|+..|++++          .+|..|.||||+|+..++.+++++|+++||+++.+|..|+|
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn----------~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~T  107 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRGYSPN----------ETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKT  107 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCcCCCC----------ccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCC
Confidence            577887653  457889999999885443          57888999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCC
Q psy15728        127 PLHKAAFVGR  136 (139)
Q Consensus       127 pl~~A~~~g~  136 (139)
                      |||+|+..++
T Consensus       108 pLh~A~~~~~  117 (446)
T PHA02946        108 PLYYLSGTDD  117 (446)
T ss_pred             HHHHHHHcCC
Confidence            9999987653

>KOG0512|consensus

Probab=99.47  E-value=2e-13  Score=87.46  Aligned_cols=84  Identities=29%  Similarity=0.410  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCc
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDT  126 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~t  126 (139)
                      +....+.+|+..+.+..|+.||...+..         ++.+|..|.||||-|+..|+.++++.|+..||+++++...|+|
T Consensus        62 dp~rl~lwaae~nrl~eV~~lL~e~an~---------vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWT  132 (228)
T KOG0512|consen   62 DPIRLLLWAAEKNRLTEVQRLLSEKANH---------VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWT  132 (228)
T ss_pred             CHHHHHHHHHhhccHHHHHHHHHhcccc---------ccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCcc
Confidence            3456678999999999999999887632         3378999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCccC
Q psy15728        127 PLHKAAFVGREVG  139 (139)
Q Consensus       127 pl~~A~~~g~~~c  139 (139)
                      |||-||.-.+.+|
T Consensus       133 PLhSAckWnN~~v  145 (228)
T KOG0512|consen  133 PLHSACKWNNFEV  145 (228)
T ss_pred             chhhhhcccchhH
Confidence            9999997665544

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.47  E-value=3.6e-14  Score=91.14  Aligned_cols=91  Identities=23%  Similarity=0.324  Sum_probs=65.5

Q ss_pred             hcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCH---HHHHHHHhCCCCCC
Q psy15728         42 QLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHK---SVVEFLLDQGVDIN  118 (139)
Q Consensus        42 ~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~---~~~~~Ll~~ga~~~  118 (139)
                      ...+..+.||||+|++.|+...+..+.....+.+.     .....+|..|.||||+|+..++.   +++++|++.|++++
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~-----~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin   85 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGVTDLLAFKNAISDENR-----YLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN   85 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhH-----HHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc
Confidence            33455789999999999985332221111111000     00114688899999999999987   46899999999999


Q ss_pred             cCCC-CCCcHHHHHHHhCCc
Q psy15728        119 AVND-AGDTPLHKAAFVGRE  137 (139)
Q Consensus       119 ~~~~-~g~tpl~~A~~~g~~  137 (139)
                      .++. .|+||||+|+..|+.
T Consensus        86 ~~~~~~g~T~Lh~A~~~~~~  105 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQNY  105 (154)
T ss_pred             ccCCCCCCcHHHHHHHhCCH
Confidence            9985 899999999998865

>KOG0515|consensus

Probab=99.43  E-value=3.5e-13  Score=98.79  Aligned_cols=79  Identities=32%  Similarity=0.490  Sum_probs=69.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHH
Q psy15728         49 HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL  128 (139)
Q Consensus        49 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl  128 (139)
                      --.|.-|+..|.++.|+.++..-.++.          ..+..|.|+||-|+-.||.+||+||++.|+++|+.|++|+|||
T Consensus       551 LaLLLDaaLeGEldlVq~~i~ev~DpS----------qpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPL  620 (752)
T KOG0515|consen  551 LALLLDAALEGELDLVQRIIYEVTDPS----------QPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPL  620 (752)
T ss_pred             HHHHHhhhhcchHHHHHHHHHhhcCCC----------CCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchh
Confidence            456678889999999999988764332          5788899999999999999999999999999999999999999


Q ss_pred             HHHHHhCCc
Q psy15728        129 HKAAFVGRE  137 (139)
Q Consensus       129 ~~A~~~g~~  137 (139)
                      |+|+..++.
T Consensus       621 HCAASCNnv  629 (752)
T KOG0515|consen  621 HCAASCNNV  629 (752)
T ss_pred             hhhhhcCch
Confidence            999986653

>KOG4214|consensus

Probab=99.43  E-value=3.8e-13  Score=77.67  Aligned_cols=76  Identities=25%  Similarity=0.348  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCC
Q psy15728         46 KEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGD  125 (139)
Q Consensus        46 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~  125 (139)
                      ..+.+|||+|+..|.++++..|+.-|++++          .+|..|.|||..|+..||.+||++|++.||+...+..+|.
T Consensus        32 ~ggR~plhyAAD~GQl~ilefli~iGA~i~----------~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~  101 (117)
T KOG4214|consen   32 YGGRTPLHYAADYGQLSILEFLISIGANIQ----------DKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGT  101 (117)
T ss_pred             hCCcccchHhhhcchHHHHHHHHHhccccC----------CccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCch
Confidence            356899999999999999999998885443          6899999999999999999999999999999999888888


Q ss_pred             cHHHHH
Q psy15728        126 TPLHKA  131 (139)
Q Consensus       126 tpl~~A  131 (139)
                      +.+..+
T Consensus       102 ~~~eat  107 (117)
T KOG4214|consen  102 ALIEAT  107 (117)
T ss_pred             hHHhhc
Confidence            877543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.43  E-value=2.2e-13  Score=105.51  Aligned_cols=68  Identities=24%  Similarity=0.273  Sum_probs=54.5

Q ss_pred             HHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHH--hCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHH
Q psy15728         56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASY--FGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAF  133 (139)
Q Consensus        56 ~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~--~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~  133 (139)
                      +..|+.++++.|+..|++.          +.+|..|+||||+|+.  .++.+++++|++.|++++.+|..|+||||+|+.
T Consensus       292 A~~g~leiVklLLe~GAdI----------N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~  361 (764)
T PHA02716        292 ARNIDISVVYSFLQPGVKL----------HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLS  361 (764)
T ss_pred             HHcCCHHHHHHHHhCCCce----------eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHH
Confidence            4456666666666666433          2578999999999864  467899999999999999999999999999865

>PHA02798 ankyrin-like protein; Provisional

Probab=99.42  E-value=4.6e-13  Score=100.41  Aligned_cols=81  Identities=23%  Similarity=0.261  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHc-----CCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhC---CHHHHHHHHhCCCCC
Q psy15728         46 KEIHELFLYNCRN-----GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFG---HKSVVEFLLDQGVDI  117 (139)
Q Consensus        46 ~~~~~~l~~a~~~-----g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~---~~~~~~~Ll~~ga~~  117 (139)
                      ..+.||||.++..     +..++++.|+..|++.+          .+|..|.||||+|+..+   +.+++++|++.||++
T Consensus        69 ~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN----------~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv  138 (489)
T PHA02798         69 NEYSTPLCTILSNIKDYKHMLDIVKILIENGADIN----------KKNSDGETPLYCLLSNGYINNLEILLFMIENGADT  138 (489)
T ss_pred             CCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCC----------CCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc
Confidence            4567777777653     55777777777774433          46777888888887764   567788888888888


Q ss_pred             CcCCCCCCcHHHHHHHhCC
Q psy15728        118 NAVNDAGDTPLHKAAFVGR  136 (139)
Q Consensus       118 ~~~~~~g~tpl~~A~~~g~  136 (139)
                      +.+|..|.||||+|+..|+
T Consensus       139 n~~d~~g~tpL~~a~~~~~  157 (489)
T PHA02798        139 TLLDKDGFTMLQVYLQSNH  157 (489)
T ss_pred             cccCCCCCcHHHHHHHcCC
Confidence            8888888888888777665

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.41  E-value=5.5e-13  Score=103.35  Aligned_cols=79  Identities=20%  Similarity=0.188  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHH--cCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCC--HHHHHHHHhCCCCCCcC
Q psy15728         45 VKEIHELFLYNCR--NGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGH--KSVVEFLLDQGVDINAV  120 (139)
Q Consensus        45 ~~~~~~~l~~a~~--~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~--~~~~~~Ll~~ga~~~~~  120 (139)
                      +..+.+|||.|+.  .++.++++.|++.|++.+          .+|..|.||||+|+..|+  .+++++|++.||+++.+
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN----------~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~k  243 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVN----------LQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMK  243 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCC----------CCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCC
Confidence            4567899998864  468999999999885443          578899999999999995  58999999999999999


Q ss_pred             CCCCCcHHHHHHH
Q psy15728        121 NDAGDTPLHKAAF  133 (139)
Q Consensus       121 ~~~g~tpl~~A~~  133 (139)
                      +..|+||||+|+.
T Consensus       244 D~~G~TPLh~Ai~  256 (764)
T PHA02716        244 CVNGMSPIMTYII  256 (764)
T ss_pred             CCCCCCHHHHHHH
Confidence            9999999998854

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.41  E-value=5.2e-13  Score=71.05  Aligned_cols=53  Identities=36%  Similarity=0.599  Sum_probs=42.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHH
Q psy15728         49 HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL  111 (139)
Q Consensus        49 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll  111 (139)
                      .++||+|+..|+.++++.|++.+.+++          .+|..|.||||+|+..|+.+++++|+
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~din----------~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGADIN----------AQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSGTT-----------B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCCC----------CCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            579999999999999999999884433          56888999999999999999999986

...

>PHA02917 ankyrin-like protein; Provisional

Probab=99.39  E-value=1.8e-12  Score=99.99  Aligned_cols=91  Identities=13%  Similarity=0.096  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHH--HcCCHHHHHHHHHhcccccccccccccC-----ccCCCCCCcHHHHHHH-----------hCCHHHH
Q psy15728         46 KEIHELFLYNC--RNGQLDKIKQLLDHCKENNVEINLSQKG-----ESKSNLGWTPLHLASY-----------FGHKSVV  107 (139)
Q Consensus        46 ~~~~~~l~~a~--~~g~~~~~~~ll~~~~~~~~~~~~~~~~-----~~~d~~g~t~l~~a~~-----------~~~~~~~  107 (139)
                      ..+.|+||.++  ..|+.++++.|+++|++.+.. +.....     ......+.||||+|+.           .++.+++
T Consensus       134 ~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~-d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv  212 (661)
T PHA02917        134 ENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYE-DEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVV  212 (661)
T ss_pred             CCCccHHHHHHHccCCCHHHHHHHHHcCCCcccc-ccccccccccccccccccccHHHHHHhhcccccccccccCcHHHH
Confidence            35678888543  467888888888888655421 000000     0012234699999976           4688999


Q ss_pred             HHHHhCCCCCCcCCCCCCcHHHHHHHhCCc
Q psy15728        108 EFLLDQGVDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus       108 ~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                      ++|++.||+++.+|.+|.||||+|+..|+.
T Consensus       213 ~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~  242 (661)
T PHA02917        213 KCLINHGIKPSSIDKNYCTALQYYIKSSHI  242 (661)
T ss_pred             HHHHHCCCCcccCCCCCCcHHHHHHHcCCC
Confidence            999999999999999999999999998874

>KOG0508|consensus

Probab=99.37  E-value=1.1e-13  Score=100.28  Aligned_cols=117  Identities=26%  Similarity=0.299  Sum_probs=92.8

Q ss_pred             cCCCCcchhhhhhccCCCccCCCchhhHHhhhc-------CHHHHHHHHHHHHHcCCHHHHHHHHHhccccccccccccc
Q psy15728         11 APGGNRTHDQVRTRHSSSEEETPNSLSAELNQL-------SVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQK   83 (139)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~   83 (139)
                      ..|.+++-.+++.+.....+.+....+.+....       ...++-+||+.|+.-|++++|+.|+.+++..|        
T Consensus        40 ~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN--------  111 (615)
T KOG0508|consen   40 QNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVN--------  111 (615)
T ss_pred             cCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccc--------
Confidence            455667777777777766655554343333322       34577889999999999999999999995444        


Q ss_pred             CccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCc
Q psy15728         84 GESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        84 ~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                        ....-..|||--||.-|+.+++++|+++|||++..|..|.|+|++||..||.
T Consensus       112 --~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~  163 (615)
T KOG0508|consen  112 --DTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHV  163 (615)
T ss_pred             --cccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCch
Confidence              3455567999999999999999999999999999999999999999999986

>PHA02795 ankyrin-like protein; Provisional

Probab=99.36  E-value=9.6e-13  Score=96.34  Aligned_cols=121  Identities=11%  Similarity=0.029  Sum_probs=82.3

Q ss_pred             ccCCCCcchhhhhhcc--CCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccC
Q psy15728         10 FAPGGNRTHDQVRTRH--SSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESK   87 (139)
Q Consensus        10 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~   87 (139)
                      .....+.+|.++....  .+. .+.....+++.+.   ..+.+++|+|+..++.++++.|+.+|+...-..+    ....
T Consensus       113 ~~~~~~~L~~~~~n~~n~~ei-V~~LI~~GADIn~---~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~----~~l~  184 (437)
T PHA02795        113 CNSVQDLLLYYLSNAYVEIDI-VDFMVDHGAVIYK---IECLNAYFRGICKKESSVVEFILNCGIPDENDVK----LDLY  184 (437)
T ss_pred             cccccHHHHHHHHhcCCCHHH-HHHHHHCCCCCCC---CCCCCHHHHHHHcCcHHHHHHHHhcCCccccccc----chhh
Confidence            3445566666666222  222 2222233333332   2336788888888888888888888752210010    1112


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        88 d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      +..+.+++|.|+..++.+++++|+++||+++.+|..|+||||+|+..|+.+
T Consensus       185 ~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~e  235 (437)
T PHA02795        185 KIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYID  235 (437)
T ss_pred             hhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHH
Confidence            345779999999999999999999999999999999999999999999863

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.36  E-value=1.4e-12  Score=97.90  Aligned_cols=111  Identities=20%  Similarity=0.177  Sum_probs=76.0

Q ss_pred             CCCCcchhhhhhcc-CCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcC------CHHHHHHHHHhcccccccccccccC
Q psy15728         12 PGGNRTHDQVRTRH-SSSEEETPNSLSAELNQLSVKEIHELFLYNCRNG------QLDKIKQLLDHCKENNVEINLSQKG   84 (139)
Q Consensus        12 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g------~~~~~~~ll~~~~~~~~~~~~~~~~   84 (139)
                      .|.+.++..+.... .....+.....+++.+...  .+.||||.|+..+      ..++++.|++.|++.+         
T Consensus        34 ~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~--~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin---------  102 (494)
T PHA02989         34 RGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG--YIETPLCAVLRNREITSNKIKKIVKLLLKFGADIN---------  102 (494)
T ss_pred             CCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC--CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCC---------
Confidence            45555655444332 2222333334445554432  3478999887654      4678888998886544         


Q ss_pred             ccCCCCCCcHHHHHHHh---CCHHHHHHHHhCCCCC-CcCCCCCCcHHHHHHHh
Q psy15728         85 ESKSNLGWTPLHLASYF---GHKSVVEFLLDQGVDI-NAVNDAGDTPLHKAAFV  134 (139)
Q Consensus        85 ~~~d~~g~t~l~~a~~~---~~~~~~~~Ll~~ga~~-~~~~~~g~tpl~~A~~~  134 (139)
                       .+|..|.||||.|+..   ++.+++++|+++||++ +.++..|+||||+|+..
T Consensus       103 -~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~  155 (494)
T PHA02989        103 -LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLES  155 (494)
T ss_pred             -CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHh
Confidence             4678899999987654   5788999999999999 78889999999988764

>KOG1710|consensus

Probab=99.36  E-value=1.8e-12  Score=89.07  Aligned_cols=89  Identities=27%  Similarity=0.353  Sum_probs=79.7

Q ss_pred             hcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCC
Q psy15728         42 QLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVN  121 (139)
Q Consensus        42 ~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  121 (139)
                      ...+..|.++|..|++.|+.+.++.||+.+++.|.         ..+..+.||||+|+..|+.+++++|++.||.....|
T Consensus        39 n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~---------~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vN  109 (396)
T KOG1710|consen   39 NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVND---------KQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVN  109 (396)
T ss_pred             hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCc---------ccccccccHHHHHHHcCCchHHHHHHhccCcccccc
Confidence            33456789999999999999999999999976653         356668899999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHhCCccC
Q psy15728        122 DAGDTPLHKAAFVGREVG  139 (139)
Q Consensus       122 ~~g~tpl~~A~~~g~~~c  139 (139)
                      .-|+|+-..|+..||.+|
T Consensus       110 svgrTAaqmAAFVG~H~C  127 (396)
T KOG1710|consen  110 SVGRTAAQMAAFVGHHEC  127 (396)
T ss_pred             chhhhHHHHHHHhcchHH
Confidence            999999999999999887

>KOG0195|consensus

Probab=99.34  E-value=3.6e-13  Score=92.61  Aligned_cols=110  Identities=27%  Similarity=0.329  Sum_probs=88.6

Q ss_pred             ccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCC
Q psy15728         10 FAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSN   89 (139)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~   89 (139)
                      +.-|.+++|-+++.+.....+.+ .+.+.-++... ....++||.|+.+|+.+++++||.+.++.|          ..+.
T Consensus        31 ddhgfsplhwaakegh~aiveml-l~rgarvn~tn-mgddtplhlaaahghrdivqkll~~kadvn----------avne   98 (448)
T KOG0195|consen   31 DDHGFSPLHWAAKEGHVAIVEML-LSRGARVNSTN-MGDDTPLHLAAAHGHRDIVQKLLSRKADVN----------AVNE   98 (448)
T ss_pred             cccCcchhhhhhhcccHHHHHHH-Hhccccccccc-CCCCcchhhhhhcccHHHHHHHHHHhcccc----------hhhc
Confidence            45577788888888877654333 33333333322 233689999999999999999999987665          4678


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHH
Q psy15728         90 LGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA  131 (139)
Q Consensus        90 ~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A  131 (139)
                      .|.|||||||..|...+++-|+..||.++..+..|.|||..|
T Consensus        99 hgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   99 HGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             cCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            899999999999999999999999999999999999999866

>PHA02730 ankyrin-like protein; Provisional

Probab=99.34  E-value=2.6e-12  Score=98.23  Aligned_cols=81  Identities=17%  Similarity=0.147  Sum_probs=69.5

Q ss_pred             cCHHHHHHHHHHHHHcC---CHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhC--CHHHHHHHHhCCC--
Q psy15728         43 LSVKEIHELFLYNCRNG---QLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFG--HKSVVEFLLDQGV--  115 (139)
Q Consensus        43 ~~~~~~~~~l~~a~~~g---~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~--~~~~~~~Ll~~ga--  115 (139)
                      ..+..|.|+||+|+..|   +.++++.||++|++++          .+|..|+||||+|+..+  +.+++++|++.|+  
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin----------~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~  105 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERL----------CRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNA  105 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCc----------ccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCC
Confidence            34456899999999987   5999999999996555          57999999999999977  7999999999965  


Q ss_pred             CCCcCCCCCCcHHHHHHH
Q psy15728        116 DINAVNDAGDTPLHKAAF  133 (139)
Q Consensus       116 ~~~~~~~~g~tpl~~A~~  133 (139)
                      +++..+..+.+|||.++.
T Consensus       106 ~~~~~~~~~d~~l~~y~~  123 (672)
T PHA02730        106 SNELTSNINDFDLYSYMS  123 (672)
T ss_pred             CcccccccCCchHHHHHH
Confidence            558888889999998887

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.34  E-value=2.1e-12  Score=101.20  Aligned_cols=89  Identities=19%  Similarity=0.174  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccC----ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCC
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKG----ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVND  122 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~----~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~  122 (139)
                      .+.||||+|+..|+.++++.|+..|++++.....+...    ......|.||||+|+..++.+++++|++.|+|++.+|.
T Consensus       127 ~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~  206 (743)
T TIGR00870       127 PGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADS  206 (743)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhh
Confidence            57899999999999999999999998776422111000    01224689999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHhC
Q psy15728        123 AGDTPLHKAAFVG  135 (139)
Q Consensus       123 ~g~tpl~~A~~~g  135 (139)
                      .|+||||+|+..+
T Consensus       207 ~g~T~Lh~A~~~~  219 (743)
T TIGR00870       207 LGNTLLHLLVMEN  219 (743)
T ss_pred             hhhHHHHHHHhhh
Confidence            9999999999875

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507|consensus

Probab=99.30  E-value=1.3e-12  Score=99.10  Aligned_cols=120  Identities=27%  Similarity=0.232  Sum_probs=96.5

Q ss_pred             CccccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCcc
Q psy15728          7 RIKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGES   86 (139)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~   86 (139)
                      ..++..+.+.+|.++..+......-+.. -.+ ...+-+..+.++||+|++.|+.++++.+|......|          .
T Consensus        43 n~qd~~gfTalhha~Lng~~~is~llle-~ea-~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~n----------a  110 (854)
T KOG0507|consen   43 NLQDYSGFTLLHHAVLNGQNQISKLLLD-YEA-LLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILN----------A  110 (854)
T ss_pred             cccCccchhHHHHHHhcCchHHHHHHhc-chh-hhhhhhccCcceEEehhhcCcchHHHHHHhcccCCC----------c
Confidence            3445678889999998888776443332 222 223333677899999999999999999998884443          4


Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        87 ~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      ....|.||||.|+.+|+.+++.+|+.+|+|.-.+|+.+.|+|..|++.|..+
T Consensus       111 ~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~  162 (854)
T KOG0507|consen  111 VNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAE  162 (854)
T ss_pred             ccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhH
Confidence            6777999999999999999999999999999999999999999999998753

>PHA02917 ankyrin-like protein; Provisional

Probab=99.29  E-value=1.2e-11  Score=95.57  Aligned_cols=80  Identities=26%  Similarity=0.260  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHcC-----------------------CHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCC
Q psy15728         47 EIHELFLYNCRNG-----------------------QLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGH  103 (139)
Q Consensus        47 ~~~~~l~~a~~~g-----------------------~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~  103 (139)
                      .+.||||.|++.+                       ..++++.|+..|++.+          .+|..|.||||+|+..++
T Consensus       395 ~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN----------~kd~~G~TpLh~Aa~~~~  464 (661)
T PHA02917        395 DGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDIN----------MIDKRGETLLHKAVRYNK  464 (661)
T ss_pred             CCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCC----------CCCCCCcCHHHHHHHcCC
Confidence            4899999987432                       3566788888886554          589999999999999999


Q ss_pred             HHHHHHHHhCCCCCCcCCCCCCcHHHHHHH-hCC
Q psy15728        104 KSVVEFLLDQGVDINAVNDAGDTPLHKAAF-VGR  136 (139)
Q Consensus       104 ~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~-~g~  136 (139)
                      .+++++|++.|++++.++..|+||||+|+. .++
T Consensus       465 ~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~  498 (661)
T PHA02917        465 QSLVSLLLESGSDVNIRSNNGYTCIAIAINESRN  498 (661)
T ss_pred             HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCC
Confidence            999999999999999999999999999985 444

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.29  E-value=2e-11  Score=74.57  Aligned_cols=80  Identities=40%  Similarity=0.615  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCc
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDT  126 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~t  126 (139)
                      .+.++||+|+..++.+++..|+..+...          +..+..|.+|+|+|+..+..+++++|+..|++++..+..|.|
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~~~~~----------~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~   75 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLENGADV----------NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNT   75 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCC----------CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence            3456666666666666666666555322          134555556666666666666666666655555555555556


Q ss_pred             HHHHHHHhCC
Q psy15728        127 PLHKAAFVGR  136 (139)
Q Consensus       127 pl~~A~~~g~  136 (139)
                      |+|+|+..++
T Consensus        76 ~l~~a~~~~~   85 (126)
T cd00204          76 PLHLAARNGN   85 (126)
T ss_pred             HHHHHHHcCc
Confidence            6666555544

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.26  E-value=1.6e-11  Score=75.08  Aligned_cols=116  Identities=29%  Similarity=0.361  Sum_probs=89.9

Q ss_pred             ccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCC
Q psy15728         10 FAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSN   89 (139)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~   89 (139)
                      ...|.+.++.+++.+.....+.+.......  ...+..+.+++|.|+..++.+.++.|+..+...+          ..+.
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~--~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~----------~~~~   71 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV--NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN----------ARDK   71 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC--CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc----------ccCC
Confidence            356778888888777654433332221111  3345567899999999999999999998874222          4567


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCc
Q psy15728         90 LGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        90 ~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                      .+.||+|+|+..++.+++++|+..|.+++..+..+.||+++|...++.
T Consensus        72 ~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~  119 (126)
T cd00204          72 DGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHL  119 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCH
Confidence            799999999999999999999999999999999999999999887653

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.25  E-value=1.5e-11  Score=82.28  Aligned_cols=87  Identities=32%  Similarity=0.390  Sum_probs=77.5

Q ss_pred             hcCHHHHHHHHHHHHHcCC-----HHHHHHHHHhccc--ccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCC
Q psy15728         42 QLSVKEIHELFLYNCRNGQ-----LDKIKQLLDHCKE--NNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG  114 (139)
Q Consensus        42 ~~~~~~~~~~l~~a~~~g~-----~~~~~~ll~~~~~--~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~g  114 (139)
                      ......+.|++|+|+..++     .++++.||..++.  ..         +..|..|.||||+|+..++.+++.+|++.|
T Consensus       100 ~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~---------~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~  170 (235)
T COG0666         100 NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVN---------NLRDEDGNTPLHWAALNGDADIVELLLEAG  170 (235)
T ss_pred             ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCc---------cccCCCCCchhHHHHHcCchHHHHHHHhcC
Confidence            4456688999999999999     9999999999862  21         146889999999999999999999999999


Q ss_pred             CCCCcCCCCCCcHHHHHHHhCCc
Q psy15728        115 VDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus       115 a~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                      ++++.++..|.|++++|+..|+.
T Consensus       171 ~~~~~~~~~g~t~l~~a~~~~~~  193 (235)
T COG0666         171 ADPNSRNSYGVTALDPAAKNGRI  193 (235)
T ss_pred             CCCcccccCCCcchhhhcccchH
Confidence            99999999999999999988764

>PHA02730 ankyrin-like protein; Provisional

Probab=99.23  E-value=2.5e-11  Score=92.95  Aligned_cols=95  Identities=14%  Similarity=0.166  Sum_probs=54.2

Q ss_pred             hHHhhhcCHHHHHHHHHHHHHcCC----HHHHHHHHHhccc--cccc-----c------------------c--------
Q psy15728         37 SAELNQLSVKEIHELFLYNCRNGQ----LDKIKQLLDHCKE--NNVE-----I------------------N--------   79 (139)
Q Consensus        37 ~~~~~~~~~~~~~~~l~~a~~~g~----~~~~~~ll~~~~~--~~~~-----~------------------~--------   79 (139)
                      +++.+. . ..+.||||+|+..++    .++++.|+..|+.  .+..     .                  .        
T Consensus       369 GAdIN~-k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk  446 (672)
T PHA02730        369 GATMDK-T-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFD  446 (672)
T ss_pred             CCCCCc-C-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHH
Confidence            444443 2 467899999998874    8999999998752  2200     0                  0        


Q ss_pred             ----ccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCC-CCCcHHHHHHH
Q psy15728         80 ----LSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVND-AGDTPLHKAAF  133 (139)
Q Consensus        80 ----~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~-~g~tpl~~A~~  133 (139)
                          .+...+.+|..|.||||+|+..++.+++++|+..||+++.++. .|.||||+|+.
T Consensus       447 ~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~  505 (672)
T PHA02730        447 ILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSY  505 (672)
T ss_pred             HHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHH
Confidence                0012234455555555555555555555555555555555554 35555555544

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.19  E-value=2.1e-11  Score=95.55  Aligned_cols=51  Identities=33%  Similarity=0.492  Sum_probs=45.0

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCC--------------CCCCcHHHHHHHhCCcc
Q psy15728         88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVN--------------DAGDTPLHKAAFVGREV  138 (139)
Q Consensus        88 d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~--------------~~g~tpl~~A~~~g~~~  138 (139)
                      ...|.||||+|+..++.+++++|+++||+++.++              ..|+||||+|+..|+.+
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~  189 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPS  189 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHH
Confidence            4569999999999999999999999999998763              35899999999988754

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02792 ankyrin-like protein; Provisional

Probab=99.18  E-value=1.2e-10  Score=88.60  Aligned_cols=76  Identities=20%  Similarity=0.132  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHcCCH---HHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCC
Q psy15728         48 IHELFLYNCRNGQL---DKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAG  124 (139)
Q Consensus        48 ~~~~l~~a~~~g~~---~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g  124 (139)
                      +.++||.|+.....   ++++.++..|++.+          .+|..|.||||+|+..++.+++++|+++|++++.++..|
T Consensus       374 ~~TpLh~A~~n~~~~v~~IlklLIs~GADIN----------~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G  443 (631)
T PHA02792        374 NIMPLFPTLSIHESDVLSILKLCKPYIDDIN----------KIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYG  443 (631)
T ss_pred             ChhHHHHHHHhccHhHHHHHHHHHhcCCccc----------cccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            35777776655443   24555666664433          678999999999999999999999999999999999999


Q ss_pred             CcHHHHHHH
Q psy15728        125 DTPLHKAAF  133 (139)
Q Consensus       125 ~tpl~~A~~  133 (139)
                      +|||++|+.
T Consensus       444 ~TpL~~A~~  452 (631)
T PHA02792        444 STCIGICVI  452 (631)
T ss_pred             CCHHHHHHH
Confidence            999999975

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.17  E-value=2.3e-10  Score=76.53  Aligned_cols=80  Identities=34%  Similarity=0.410  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCC-----HHHHHHHHhCCC---CCCc
Q psy15728         48 IHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGH-----KSVVEFLLDQGV---DINA  119 (139)
Q Consensus        48 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~-----~~~~~~Ll~~ga---~~~~  119 (139)
                      ...+++.++..++...+..++..+.+.+          .++..|.||+|+|+..++     .+++++|++.|+   ..+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~  142 (235)
T COG0666          73 GRLPLHSAASKGDDKIVKLLLASGADVN----------AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNL  142 (235)
T ss_pred             ccCHHHHHHHcCcHHHHHHHHHcCCCcc----------cccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccc
Confidence            5789999999999999999988885443          689999999999999999     999999999999   6677


Q ss_pred             CCCCCCcHHHHHHHhCCc
Q psy15728        120 VNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus       120 ~~~~g~tpl~~A~~~g~~  137 (139)
                      ++..|.||||+|+..|+.
T Consensus       143 ~~~~g~tpl~~A~~~~~~  160 (235)
T COG0666         143 RDEDGNTPLHWAALNGDA  160 (235)
T ss_pred             cCCCCCchhHHHHHcCch
Confidence            799999999999998875

>KOG0818|consensus

Probab=99.17  E-value=2e-10  Score=83.98  Aligned_cols=84  Identities=29%  Similarity=0.369  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCC
Q psy15728         45 VKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAG  124 (139)
Q Consensus        45 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g  124 (139)
                      .++-...||-.++.|+.+....||.-|++.|+         .--..|.||||.|+..|+.-.+++|+-+|||+++.|.+|
T Consensus       130 ~~~LsrQLhasvRt~nlet~LRll~lGA~~N~---------~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~G  200 (669)
T KOG0818|consen  130 AKDLSKQLHSSVRTGNLETCLRLLSLGAQANF---------FHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSG  200 (669)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHHcccccCC---------CCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCC
Confidence            34557889999999999999999999988775         123448999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhCCc
Q psy15728        125 DTPLHKAAFVGRE  137 (139)
Q Consensus       125 ~tpl~~A~~~g~~  137 (139)
                      .||+.+|...||-
T Consensus       201 mtP~~~AR~~gH~  213 (669)
T KOG0818|consen  201 MTPVDYARQGGHH  213 (669)
T ss_pred             CcHHHHHHhcCch
Confidence            9999999999885

>KOG0506|consensus

Probab=99.16  E-value=1.6e-11  Score=89.18  Aligned_cols=83  Identities=28%  Similarity=0.380  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhC-CCCCCcCCCCCC
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-GVDINAVNDAGD  125 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~-ga~~~~~~~~g~  125 (139)
                      +..-.+++|++.|++..++.+...+.++.          .+|++.+|+||+|+..|+.+++++|+.. +.+++.+|.+|+
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~----------~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~r  574 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLE----------TKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGR  574 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhccccc----------ccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCC
Confidence            44667899999999999999988884443          6899999999999999999999999976 899999999999


Q ss_pred             cHHHHHHHhCCccC
Q psy15728        126 TPLHKAAFVGREVG  139 (139)
Q Consensus       126 tpl~~A~~~g~~~c  139 (139)
                      |||.-|...+|++|
T Consensus       575 tPlDdA~~F~h~~v  588 (622)
T KOG0506|consen  575 TPLDDAKHFKHKEV  588 (622)
T ss_pred             CcchHhHhcCcHHH
Confidence            99999999998764

>PF13606 Ank_3: Ankyrin repeat

Probab=99.14  E-value=1e-10  Score=54.44  Aligned_cols=30  Identities=50%  Similarity=0.821  Sum_probs=28.1

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCc
Q psy15728         90 LGWTPLHLASYFGHKSVVEFLLDQGVDINA  119 (139)
Q Consensus        90 ~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~  119 (139)
                      +|+||||+|+..|+.+++++|++.|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            389999999999999999999999999874

>KOG3676|consensus

Probab=99.13  E-value=2e-10  Score=87.98  Aligned_cols=91  Identities=20%  Similarity=0.211  Sum_probs=73.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhccccccccc--ccccCcc-----------CCCCCCcHHHHHHHhCCHHHHHHH
Q psy15728         44 SVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEIN--LSQKGES-----------KSNLGWTPLHLASYFGHKSVVEFL  110 (139)
Q Consensus        44 ~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~--~~~~~~~-----------~d~~g~t~l~~a~~~~~~~~~~~L  110 (139)
                      ....|.++||.|+.+.+.++|+.|+..|++.+...-  .-+..++           .-+.|..||-+||-.++.+|+++|
T Consensus       180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL  259 (782)
T KOG3676|consen  180 EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL  259 (782)
T ss_pred             HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence            345779999999999999999999999998874210  0000011           134578999999999999999999


Q ss_pred             HhCCCCCCcCCCCCCcHHHHHHHh
Q psy15728        111 LDQGVDINAVNDAGDTPLHKAAFV  134 (139)
Q Consensus       111 l~~ga~~~~~~~~g~tpl~~A~~~  134 (139)
                      +++|||++++|+.|+|.||..+.+
T Consensus       260 l~~gAd~~aqDS~GNTVLH~lVi~  283 (782)
T KOG3676|consen  260 LAHGADPNAQDSNGNTVLHMLVIH  283 (782)
T ss_pred             HhcCCCCCccccCCChHHHHHHHH
Confidence            999999999999999999987653

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.13  E-value=1.6e-10  Score=55.06  Aligned_cols=33  Identities=48%  Similarity=0.743  Sum_probs=30.8

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCC
Q psy15728         90 LGWTPLHLASYFGHKSVVEFLLDQGVDINAVND  122 (139)
Q Consensus        90 ~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~  122 (139)
                      .|.||||+|+..++.+++++|+++|++++.+|.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            389999999999999999999999999998874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PHA02792 ankyrin-like protein; Provisional

Probab=99.07  E-value=6.5e-10  Score=84.65  Aligned_cols=80  Identities=13%  Similarity=0.076  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCC--CCcHHHHHHHhCCH---HHHHHHHhCCCCCCcCCC
Q psy15728         48 IHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNL--GWTPLHLASYFGHK---SVVEFLLDQGVDINAVND  122 (139)
Q Consensus        48 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~--g~t~l~~a~~~~~~---~~~~~Ll~~ga~~~~~~~  122 (139)
                      ....++.|+..|+.++++.|+..|++.+          .+|..  +.||||+|+.....   +++++|+..||+++.+|.
T Consensus       339 ~~n~~~~Aa~~gn~eIVelLIs~GADIN----------~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~  408 (631)
T PHA02792        339 HINKYFQKFDNRDPKVVEYILKNGNVVV----------EDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDK  408 (631)
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCchh----------hhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccc
Confidence            3556889999999999999999996554          35555  46999998776654   458889999999999999


Q ss_pred             CCCcHHHHHHHhCCc
Q psy15728        123 AGDTPLHKAAFVGRE  137 (139)
Q Consensus       123 ~g~tpl~~A~~~g~~  137 (139)
                      .|+||||+|+..++.
T Consensus       409 ~G~TPLh~Aa~~~n~  423 (631)
T PHA02792        409 HGRSILYYCIESHSV  423 (631)
T ss_pred             cCcchHHHHHHcCCH
Confidence            999999999988764

>KOG0507|consensus

Probab=99.05  E-value=8.2e-11  Score=89.52  Aligned_cols=85  Identities=35%  Similarity=0.300  Sum_probs=75.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCC
Q psy15728         44 SVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDA  123 (139)
Q Consensus        44 ~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~  123 (139)
                      .+..+.|.||.|+.+|+..+++.|++..+...          .+|..|.+|||+|++.|+.+++++|+.++..+|+.+..
T Consensus        45 qd~~gfTalhha~Lng~~~is~llle~ea~ld----------l~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e  114 (854)
T KOG0507|consen   45 QDYSGFTLLHHAVLNGQNQISKLLLDYEALLD----------LCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIE  114 (854)
T ss_pred             cCccchhHHHHHHhcCchHHHHHHhcchhhhh----------hhhccCcceEEehhhcCcchHHHHHHhcccCCCccccc
Confidence            34478999999999999999999998774332          46788999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHhCCcc
Q psy15728        124 GDTPLHKAAFVGREV  138 (139)
Q Consensus       124 g~tpl~~A~~~g~~~  138 (139)
                      |.||||.|+++||..
T Consensus       115 ~~tplhlaaqhgh~d  129 (854)
T KOG0507|consen  115 NETPLHLAAQHGHLE  129 (854)
T ss_pred             CcCccchhhhhcchH
Confidence            999999999999853

>KOG0505|consensus

Probab=99.03  E-value=3.6e-10  Score=83.08  Aligned_cols=79  Identities=34%  Similarity=0.539  Sum_probs=69.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHH
Q psy15728         49 HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL  128 (139)
Q Consensus        49 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl  128 (139)
                      .-.+..|+..|+.+-+..|+..++.++          ..+.+|.|+||.++.-.+.+||++|+++|++|++.|++|+|||
T Consensus        41 sa~~l~A~~~~d~~ev~~ll~~ga~~~----------~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPl  110 (527)
T KOG0505|consen   41 SAVFLEACSRGDLEEVRKLLNRGASPN----------LCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPL  110 (527)
T ss_pred             hHHHHhccccccHHHHHHHhccCCCcc----------ccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcc
Confidence            345677889999999999999885443          5678899999999999999999999999999999999999999


Q ss_pred             HHHHHhCCc
Q psy15728        129 HKAAFVGRE  137 (139)
Q Consensus       129 ~~A~~~g~~  137 (139)
                      |-|+.-||.
T Consensus       111 haaascg~~  119 (527)
T KOG0505|consen  111 HAAASCGYL  119 (527)
T ss_pred             hhhcccccH
Confidence            999887764

>KOG0515|consensus

Probab=99.01  E-value=3.7e-10  Score=83.28  Aligned_cols=76  Identities=22%  Similarity=0.323  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCC-CCC
Q psy15728         46 KEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVN-DAG  124 (139)
Q Consensus        46 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~-~~g  124 (139)
                      .+|-|+||-|+--|+.++|+.||..|++.|          ..|.+||||||+|+..++..+++.|++.|+-+-+.. +++
T Consensus       581 dEGITaLHNAiCaghyeIVkFLi~~ganVN----------a~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDm  650 (752)
T KOG0515|consen  581 DEGITALHNAICAGHYEIVKFLIEFGANVN----------AADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDM  650 (752)
T ss_pred             ccchhHHhhhhhcchhHHHHHHHhcCCccc----------CccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccc
Confidence            477899999999999999999999995444          689999999999999999999999999998876654 457


Q ss_pred             CcHHHHH
Q psy15728        125 DTPLHKA  131 (139)
Q Consensus       125 ~tpl~~A  131 (139)
                      .|+..-+
T Consensus       651 eTa~eKC  657 (752)
T KOG0515|consen  651 ETAAEKC  657 (752)
T ss_pred             cchhhhc
Confidence            7887654

>KOG0502|consensus

Probab=99.00  E-value=4.1e-10  Score=74.97  Aligned_cols=78  Identities=28%  Similarity=0.378  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCc
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDT  126 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~t  126 (139)
                      .+.+++.+++...+++.+..+.+            ..++..|..|.|||+||+..|++.++++|+..||++++.....++
T Consensus       128 ~p~s~~slsVhql~L~~~~~~~~------------n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~res  195 (296)
T KOG0502|consen  128 MPWSPLSLSVHQLHLDVVDLLVN------------NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRES  195 (296)
T ss_pred             ccCChhhHHHHHHHHHHHHHHhh------------ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhh
Confidence            34566777766666655554433            233468999999999999999999888888888887776666666


Q ss_pred             HHHHHHHhCC
Q psy15728        127 PLHKAAFVGR  136 (139)
Q Consensus       127 pl~~A~~~g~  136 (139)
                      +|.+|++.|.
T Consensus       196 ALsLAt~ggy  205 (296)
T KOG0502|consen  196 ALSLATRGGY  205 (296)
T ss_pred             hHhHHhcCCh
Confidence            6666666554

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.00  E-value=8.7e-10  Score=85.57  Aligned_cols=78  Identities=23%  Similarity=0.339  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhC-------CCCC
Q psy15728         45 VKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-------GVDI  117 (139)
Q Consensus        45 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~-------ga~~  117 (139)
                      +..+.|+||+|+..|+.++++.|+..+++.+          .+|..|.||||+|+..++.+++++|+.+       |+++
T Consensus       112 d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn----------~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~  181 (664)
T PTZ00322        112 DYDGRTPLHIACANGHVQVVRVLLEFGADPT----------LLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANA  181 (664)
T ss_pred             CCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC----------CCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCC
Confidence            4567999999999999999999999985544          5788999999999999999999999998       9999


Q ss_pred             CcCCCCCCcHHHHHH
Q psy15728        118 NAVNDAGDTPLHKAA  132 (139)
Q Consensus       118 ~~~~~~g~tpl~~A~  132 (139)
                      +..+..|.+|+..+.
T Consensus       182 ~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        182 KPDSFTGKPPSLEDS  196 (664)
T ss_pred             CccccCCCCccchhh
Confidence            998988888877554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=98.97  E-value=6e-10  Score=59.57  Aligned_cols=47  Identities=28%  Similarity=0.367  Sum_probs=29.2

Q ss_pred             hcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHH
Q psy15728         42 QLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLA   98 (139)
Q Consensus        42 ~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a   98 (139)
                      ...+..+.|+||+|+..|+.++++.|+..+.+.+          .+|..|+||+|+|
T Consensus        10 n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~----------~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   10 NAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPN----------AKDKDGQTPLHYA   56 (56)
T ss_dssp             T---TTS--HHHHHHHHT-HHHHHHHHHCT--TT-------------TTS--HHHH-
T ss_pred             cCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCC----------CCcCCCCCHHHhC
Confidence            3456678899999999999999999997774443          6899999999987

>KOG1710|consensus

Probab=98.96  E-value=5.8e-09  Score=72.04  Aligned_cols=81  Identities=26%  Similarity=0.354  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcC-CCCCC
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAV-NDAGD  125 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~-~~~g~  125 (139)
                      ....+|..+...++.+....||..--+.          +..|..|-++|..|+..|+.+.++.|++.|||+|.. +..++
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~v----------n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~Y   80 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQV----------NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLY   80 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhh----------hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccc
Confidence            4478899999999999999999874222          268999999999999999999999999999999875 55689


Q ss_pred             cHHHHHHHhCCc
Q psy15728        126 TPLHKAAFVGRE  137 (139)
Q Consensus       126 tpl~~A~~~g~~  137 (139)
                      |||+.|+..|+.
T Consensus        81 TpLmFAALSGn~   92 (396)
T KOG1710|consen   81 TPLMFAALSGNQ   92 (396)
T ss_pred             cHHHHHHHcCCc
Confidence            999999998874

>KOG0522|consensus

Probab=98.95  E-value=2e-09  Score=79.26  Aligned_cols=80  Identities=30%  Similarity=0.454  Sum_probs=68.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHH
Q psy15728         50 ELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLH  129 (139)
Q Consensus        50 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~  129 (139)
                      .++|+++...+.+-+...+.....    ..++    .+|..|.||||+|+..|+...++.|+..||++..+|++|++|||
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~----~~id----~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~   93 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVS----LVID----RRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLH   93 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhh----ceec----cccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHH
Confidence            578999998888887776544321    2222    67999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCc
Q psy15728        130 KAAFVGRE  137 (139)
Q Consensus       130 ~A~~~g~~  137 (139)
                      -|+..|+.
T Consensus        94 EAv~~g~~  101 (560)
T KOG0522|consen   94 EAVSTGNE  101 (560)
T ss_pred             HHHHcCCH
Confidence            99999875

>KOG0505|consensus

Probab=98.93  E-value=7.3e-10  Score=81.47  Aligned_cols=78  Identities=31%  Similarity=0.544  Sum_probs=71.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCC
Q psy15728         44 SVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDA  123 (139)
Q Consensus        44 ~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~  123 (139)
                      ...++.|.+|.++.-.+.++|+.+++.++.+|          ..|..+|||+|.|+..|+..++.+|+..||++...|.+
T Consensus        69 ~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn----------~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsd  138 (527)
T KOG0505|consen   69 CNVDGLTALHQACIDDNLEMVKFLVENGANVN----------AQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSD  138 (527)
T ss_pred             cCCccchhHHHHHhcccHHHHHHHHHhcCCcc----------ccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCC
Confidence            34578999999999999999999999995444          68999999999999999999999999999999999999


Q ss_pred             CCcHHHHH
Q psy15728        124 GDTPLHKA  131 (139)
Q Consensus       124 g~tpl~~A  131 (139)
                      |..|+..+
T Consensus       139 g~~P~dl~  146 (527)
T KOG0505|consen  139 GNMPYDLA  146 (527)
T ss_pred             CCCccccc
Confidence            99998765

>KOG3676|consensus

Probab=98.88  E-value=4.5e-09  Score=80.74  Aligned_cols=84  Identities=23%  Similarity=0.260  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC--CCcCCC
Q psy15728         45 VKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVD--INAVND  122 (139)
Q Consensus        45 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~--~~~~~~  122 (139)
                      -..|+.||.+||=.++.++++.|+.++++++          .+|..|+|.||..+.+...++-++++++|++  ...+|.
T Consensus       237 ~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~----------aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~  306 (782)
T KOG3676|consen  237 FYFGEYPLSFAACTNQPEIVRLLLAHGADPN----------AQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNN  306 (782)
T ss_pred             eeeccCchHHHHHcCCHHHHHHHHhcCCCCC----------ccccCCChHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence            3467899999999999999999999997665          5899999999999999999999999999999  899999


Q ss_pred             CCCcHHHHHHHhCCcc
Q psy15728        123 AGDTPLHKAAFVGREV  138 (139)
Q Consensus       123 ~g~tpl~~A~~~g~~~  138 (139)
                      .|-|||-.|+.-|.++
T Consensus       307 qgLTPLtLAaklGk~e  322 (782)
T KOG3676|consen  307 QGLTPLTLAAKLGKKE  322 (782)
T ss_pred             CCCChHHHHHHhhhHH
Confidence            9999999999988764

>KOG0705|consensus

Probab=98.77  E-value=1.3e-08  Score=75.80  Aligned_cols=85  Identities=28%  Similarity=0.316  Sum_probs=70.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHH
Q psy15728         49 HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL  128 (139)
Q Consensus        49 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl  128 (139)
                      ...|..|+...++..+-.||.+|....+  +-.    ..+..|+|+||+|+..|++.+.++|+=+|+|+.++|..|+|+|
T Consensus       625 gqqLl~A~~~~Dl~t~~lLLAhg~~~e~--~~t----~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l  698 (749)
T KOG0705|consen  625 GQQLLRAVAAEDLQTAILLLAHGSREEV--NET----CGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTAL  698 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCchhh--hcc----ccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhh
Confidence            3456777788888888888888764432  221    2466689999999999999999999999999999999999999


Q ss_pred             HHHHHhCCccC
Q psy15728        129 HKAAFVGREVG  139 (139)
Q Consensus       129 ~~A~~~g~~~c  139 (139)
                      .||.+.|.-+|
T Consensus       699 ~yar~a~sqec  709 (749)
T KOG0705|consen  699 FYARQAGSQEC  709 (749)
T ss_pred             hhHhhcccHHH
Confidence            99999987766

>KOG0782|consensus

Probab=98.69  E-value=3.1e-08  Score=74.09  Aligned_cols=83  Identities=25%  Similarity=0.442  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCC
Q psy15728         46 KEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGD  125 (139)
Q Consensus        46 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~  125 (139)
                      .+..+.||+|+..|+-++++++|++++..-++        ..|..|.|+||-|+-.++-.++++|++.||.+...|..|.
T Consensus       897 ~~~~sllh~a~~tg~~eivkyildh~p~elld--------~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~  968 (1004)
T KOG0782|consen  897 PDHCSLLHYAAKTGNGEIVKYILDHGPSELLD--------MADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGK  968 (1004)
T ss_pred             cchhhHHHHHHhcCChHHHHHHHhcCCHHHHH--------HHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCC
Confidence            46689999999999999999999998755432        4678899999999999999999999999999999999999


Q ss_pred             cHHHHHHHhCC
Q psy15728        126 TPLHKAAFVGR  136 (139)
Q Consensus       126 tpl~~A~~~g~  136 (139)
                      ||-.-|-..|.
T Consensus       969 tp~eraqqa~d  979 (1004)
T KOG0782|consen  969 TPQERAQQAGD  979 (1004)
T ss_pred             ChHHHHHhcCC
Confidence            99988876654

>KOG0511|consensus

Probab=98.63  E-value=1.5e-07  Score=67.34  Aligned_cols=73  Identities=29%  Similarity=0.457  Sum_probs=63.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHH
Q psy15728         49 HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL  128 (139)
Q Consensus        49 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl  128 (139)
                      +..|..||+.|+++.+++|++.|      ++++    ++|.....||.+|+..||..++++|+++||--..-..+|..++
T Consensus        37 f~elceacR~GD~d~v~~LVetg------vnVN----~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~  106 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETG------VNVN----AVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH  106 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhC------CCcc----hhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh
Confidence            67799999999999999999987      4444    7899999999999999999999999999998877777888776


Q ss_pred             HHH
Q psy15728        129 HKA  131 (139)
Q Consensus       129 ~~A  131 (139)
                      +-|
T Consensus       107 Yga  109 (516)
T KOG0511|consen  107 YGA  109 (516)
T ss_pred             hhh
Confidence            544

>KOG0783|consensus

Probab=98.63  E-value=2.9e-08  Score=76.95  Aligned_cols=85  Identities=20%  Similarity=0.308  Sum_probs=74.3

Q ss_pred             HhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCC-CCcHHHHHHHhCCHHHHHHHHhCCCCC
Q psy15728         39 ELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNL-GWTPLHLASYFGHKSVVEFLLDQGVDI  117 (139)
Q Consensus        39 ~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~-g~t~l~~a~~~~~~~~~~~Ll~~ga~~  117 (139)
                      ....+.+.-|.+.||.++..+...+++.||.+|.+..          .+|.+ |+||||-|..+|+++|+-.|+.+|+.+
T Consensus        43 n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~----------vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL  112 (1267)
T KOG0783|consen   43 NLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVF----------VQDEESGYTALHRAIYYGNIDCASLLLSKGRSL  112 (1267)
T ss_pred             hhhhHHHhhccceeeeeeccchhHHHHHHHhcCceee----------eccccccchHhhHhhhhchHHHHHHHHhcCCce
Confidence            3456677788999999999999999999999985443          34544 999999999999999999999999999


Q ss_pred             CcCCCCCCcHHHHHHH
Q psy15728        118 NAVNDAGDTPLHKAAF  133 (139)
Q Consensus       118 ~~~~~~g~tpl~~A~~  133 (139)
                      ..+|.+|..||..-++
T Consensus       113 ~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  113 RIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             EEecccCCCHHHHHhh
Confidence            9999999999997765

>KOG0783|consensus

Probab=98.49  E-value=2.5e-08  Score=77.26  Aligned_cols=54  Identities=31%  Similarity=0.498  Sum_probs=51.5

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCC-CCcHHHHHHHhCCccC
Q psy15728         86 SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDA-GDTPLHKAAFVGREVG  139 (139)
Q Consensus        86 ~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~-g~tpl~~A~~~g~~~c  139 (139)
                      .+|..|+++||.++..+...++++|+.+|+++..+|.+ |+||||-|...|+..|
T Consensus        47 ikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idc  101 (1267)
T KOG0783|consen   47 IKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDC  101 (1267)
T ss_pred             HHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHH
Confidence            67999999999999999999999999999999999876 9999999999999887

>KOG0705|consensus

Probab=98.33  E-value=9.5e-07  Score=66.25  Aligned_cols=63  Identities=17%  Similarity=0.195  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q psy15728         46 KEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDIN  118 (139)
Q Consensus        46 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~  118 (139)
                      .++.|+||.|++.|++.+.+.|+..+.+.      .    .+|..|+|+|.||...|..+|+.+|+.+|+..+
T Consensus       659 ~~grt~LHLa~~~gnVvl~QLLiWyg~dv------~----~rda~g~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  659 GDGRTALHLAARKGNVVLAQLLIWYGVDV------M----ARDAHGRTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             CCCcchhhhhhhhcchhHHHHHHHhCccc------e----ecccCCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            36689999999999999999999988433      3    579999999999999999999999999998754

>PF13606 Ank_3: Ankyrin repeat

Probab=98.30  E-value=4.8e-07  Score=41.92  Aligned_cols=28  Identities=25%  Similarity=0.383  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccc
Q psy15728         48 IHELFLYNCRNGQLDKIKQLLDHCKENN   75 (139)
Q Consensus        48 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~   75 (139)
                      ++|+||+|++.|+.++++.||+.+++++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5799999999999999999999886543

>KOG4369|consensus

Probab=98.17  E-value=4.2e-07  Score=72.86  Aligned_cols=84  Identities=25%  Similarity=0.246  Sum_probs=56.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCC
Q psy15728         44 SVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDA  123 (139)
Q Consensus        44 ~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~  123 (139)
                      .++.+.++|..|+--|+...|..||.+.+++..         ..|..+.|+|-+||..|+.+++..|+..||+...++-.
T Consensus       786 rdkkgf~plImaatagh~tvV~~llk~ha~vea---------Qsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvs  856 (2131)
T KOG4369|consen  786 RDKKGFVPLIMAATAGHITVVQDLLKAHADVEA---------QSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVS  856 (2131)
T ss_pred             cccccchhhhhhcccCchHHHHHHHhhhhhhhh---------hcccccCceEEEecCCCcchHHHHHHHhhccccccchh
Confidence            345566777777777777777777766643332         35666777777777777777777777777777777777


Q ss_pred             CCcHHHHHHHhCC
Q psy15728        124 GDTPLHKAAFVGR  136 (139)
Q Consensus       124 g~tpl~~A~~~g~  136 (139)
                      ..|||.+|...|.
T Consensus       857 DytPlsla~Sggy  869 (2131)
T KOG4369|consen  857 DYTPLSLARSGGY  869 (2131)
T ss_pred             hcCchhhhcCcch
Confidence            7777777766554

>KOG2505|consensus

Probab=98.17  E-value=5.4e-06  Score=61.29  Aligned_cols=69  Identities=28%  Similarity=0.424  Sum_probs=58.0

Q ss_pred             CHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHH
Q psy15728         60 QLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA  132 (139)
Q Consensus        60 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~  132 (139)
                      ....|..|...+..+|+++-..    ..+..-.|+||+|+..|..+++.+|++.|+|+.++|..|+||+.++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe----~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPE----ANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCccccccccc----ccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            4667777777777777654443    56777889999999999999999999999999999999999998764

>KOG2384|consensus

Probab=98.13  E-value=5.1e-06  Score=54.42  Aligned_cols=52  Identities=23%  Similarity=0.424  Sum_probs=49.0

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCC-CCCCcCCCCCCcHHHHHHHhCCc
Q psy15728         86 SKSNLGWTPLHLASYFGHKSVVEFLLDQG-VDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        86 ~~d~~g~t~l~~a~~~~~~~~~~~Ll~~g-a~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                      .+|..|||+++.|+..|+.+.+.||+.+| +.+...|..+.+++.+|-..|+.
T Consensus         7 ~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~   59 (223)
T KOG2384|consen    7 ARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQ   59 (223)
T ss_pred             chhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChH
Confidence            78999999999999999999999999999 99999999999999999888763

>KOG0521|consensus

Probab=98.12  E-value=2.2e-06  Score=67.54  Aligned_cols=77  Identities=31%  Similarity=0.407  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcH
Q psy15728         48 IHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTP  127 (139)
Q Consensus        48 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tp  127 (139)
                      +.+.||.|+..|..-.+..||..+++.+          ..|..|++|+|.+...|+...+..|+++||+.++.+.+|.+|
T Consensus       656 ~~s~lh~a~~~~~~~~~e~ll~~ga~vn----------~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~  725 (785)
T KOG0521|consen  656 GCSLLHVAVGTGDSGAVELLLQNGADVN----------ALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLP  725 (785)
T ss_pred             ccchhhhhhccchHHHHHHHHhcCCcch----------hhhccCCCcchhhhhhcccchhhhhccccccccccCccCcch
Confidence            4789999999999999999999986544          678999999999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q psy15728        128 LHKAAFV  134 (139)
Q Consensus       128 l~~A~~~  134 (139)
                      +++|...
T Consensus       726 l~~a~~~  732 (785)
T KOG0521|consen  726 LDIAMEA  732 (785)
T ss_pred             hhHHhhh
Confidence            9999654

>KOG4369|consensus

Probab=98.10  E-value=4.3e-07  Score=72.82  Aligned_cols=84  Identities=26%  Similarity=0.247  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCC
Q psy15728         45 VKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAG  124 (139)
Q Consensus        45 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g  124 (139)
                      .+.+-.||+.|...|+....+.||..+.++|..+..+         -+|+|.+|+..|+.+++..|+.+.+++..+-..|
T Consensus       889 SklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTN---------rnTaltla~fqgr~evv~lLLa~~anvehRaktg  959 (2131)
T KOG4369|consen  889 SKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETN---------RNTALTLALFQGRPEVVFLLLAAQANVEHRAKTG  959 (2131)
T ss_pred             cccCcchhhhhhhccccHHHHHHhcccchhccccccc---------cccceeeccccCcchHHHHHHHHhhhhhhhcccC
Confidence            3455667777777777777777777777666544433         6678888888888888888888888888888888


Q ss_pred             CcHHHHHHHhCCc
Q psy15728        125 DTPLHKAAFVGRE  137 (139)
Q Consensus       125 ~tpl~~A~~~g~~  137 (139)
                      -|||..++..|..
T Consensus       960 ltplme~AsgGyv  972 (2131)
T KOG4369|consen  960 LTPLMEMASGGYV  972 (2131)
T ss_pred             CcccchhhcCCcc
Confidence            8888888887763

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.01  E-value=3.4e-06  Score=39.83  Aligned_cols=28  Identities=29%  Similarity=0.392  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhccccc
Q psy15728         48 IHELFLYNCRNGQLDKIKQLLDHCKENN   75 (139)
Q Consensus        48 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~   75 (139)
                      |.||||+|+..|+.++++.|+..+++++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~   29 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADIN   29 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence            5789999999999999999999886554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818|consensus

Probab=97.92  E-value=1.4e-05  Score=59.29  Aligned_cols=68  Identities=22%  Similarity=0.239  Sum_probs=58.6

Q ss_pred             chhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHH
Q psy15728         34 NSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL  111 (139)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll  111 (139)
                      ..++++.+....+.+.||||.|++.|+..-+..|+-.|++++          ..|.+|.||+.+|...||.++..-|+
T Consensus       153 l~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~----------a~d~~GmtP~~~AR~~gH~~laeRl~  220 (669)
T KOG0818|consen  153 LSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPG----------AQDSSGMTPVDYARQGGHHELAERLV  220 (669)
T ss_pred             HHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCC----------CCCCCCCcHHHHHHhcCchHHHHHHH
Confidence            356788888889999999999999999999999999997776          57999999999999999987654444

>KOG0522|consensus

Probab=97.89  E-value=1.1e-05  Score=60.09  Aligned_cols=58  Identities=24%  Similarity=0.371  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHh
Q psy15728         45 VKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD  112 (139)
Q Consensus        45 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~  112 (139)
                      +..+.||||.|+..|+...++.|+..+++..          .+++.|+++||-|+..|..+++.-++.
T Consensus        52 D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~----------~kN~~gWs~L~EAv~~g~~q~i~~vlr  109 (560)
T KOG0522|consen   52 DPPGRTPLHLAVRLGHVEAARILLSAGADVS----------IKNNEGWSPLHEAVSTGNEQIITEVLR  109 (560)
T ss_pred             cCCCCccHHHHHHhcCHHHHHHHHhcCCCcc----------ccccccccHHHHHHHcCCHHHHHHHHH
Confidence            4466999999999999999999999996554          578999999999999999987765553

>KOG0782|consensus

Probab=97.80  E-value=4e-05  Score=57.95  Aligned_cols=76  Identities=24%  Similarity=0.314  Sum_probs=59.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC--CCcCCCCCCcHH
Q psy15728         51 LFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVD--INAVNDAGDTPL  128 (139)
Q Consensus        51 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~--~~~~~~~g~tpl  128 (139)
                      .+..|+..+++-.++..-..|+..    .      .++....+.||+|+..|+.++|+|++++|..  +++.+..|+|+|
T Consensus       869 eil~av~~~D~~klqE~h~~gg~l----l------~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~l  938 (1004)
T KOG0782|consen  869 EILRAVLSSDLMKLQETHLNGGSL----L------IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETAL  938 (1004)
T ss_pred             HHHHHHHhccHHHHHHHHhcCCce----E------eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHH
Confidence            477888888876555554444322    1      3567788999999999999999999999876  678899999999


Q ss_pred             HHHHHhCC
Q psy15728        129 HKAAFVGR  136 (139)
Q Consensus       129 ~~A~~~g~  136 (139)
                      |-|+..++
T Consensus       939 hkaa~~~~  946 (1004)
T KOG0782|consen  939 HKAACQRN  946 (1004)
T ss_pred             HHHHHhcc
Confidence            98877654

>KOG0520|consensus

Probab=97.65  E-value=1.2e-05  Score=63.84  Aligned_cols=91  Identities=23%  Similarity=0.308  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHh-ccccccccccc------------------------ccCccCCCCCCcHHHHHHH
Q psy15728         46 KEIHELFLYNCRNGQLDKIKQLLDH-CKENNVEINLS------------------------QKGESKSNLGWTPLHLASY  100 (139)
Q Consensus        46 ~~~~~~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~~------------------------~~~~~~d~~g~t~l~~a~~  100 (139)
                      -.+++.+|.++..+....+.++++- +. .-.+.+.+                        ..++.+|..|+||||||+.
T Consensus       572 ~r~~lllhL~a~~lyawLie~~~e~~~~-~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~  650 (975)
T KOG0520|consen  572 FRDMLLLHLLAELLYAWLIEKVIEWAGS-GDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAF  650 (975)
T ss_pred             CcchHHHHHHHHHhHHHHHHHHhccccc-CchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhh
Confidence            3568899999999999888888874 11 00000000                        1114567777777777777


Q ss_pred             hCCHHHHHHHHhCCCCCCcC------CCCCCcHHHHHHHhCCc
Q psy15728        101 FGHKSVVEFLLDQGVDINAV------NDAGDTPLHKAAFVGRE  137 (139)
Q Consensus       101 ~~~~~~~~~Ll~~ga~~~~~------~~~g~tpl~~A~~~g~~  137 (139)
                      +|+..++..|++.|++....      .-.|.|+-..|...|+.
T Consensus       651 ~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~  693 (975)
T KOG0520|consen  651 RGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHK  693 (975)
T ss_pred             cCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhccccc
Confidence            77777777777665554322      23466666666666654

>smart00248 ANK ankyrin repeats

Probab=97.62  E-value=0.00017  Score=31.58  Aligned_cols=28  Identities=61%  Similarity=0.906  Sum_probs=25.6

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q psy15728         91 GWTPLHLASYFGHKSVVEFLLDQGVDIN  118 (139)
Q Consensus        91 g~t~l~~a~~~~~~~~~~~Ll~~ga~~~  118 (139)
                      +.||+|+++..++.+++++|++.|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            7899999999999999999999888764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0520|consensus

Probab=97.58  E-value=6.2e-06  Score=65.46  Aligned_cols=66  Identities=17%  Similarity=0.212  Sum_probs=54.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhC
Q psy15728         44 SVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ  113 (139)
Q Consensus        44 ~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~  113 (139)
                      .+..|++|||||+.+|+..++..|+..+++.++..+..    ..+..|.|+.-+|...|+..+..+|-+.
T Consensus       637 ~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps----~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  637 RDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPS----PETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             ccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCC----CCCCCCCchhhhhhcccccchHHHHhhh
Confidence            45577899999999999999999998888888655543    4566788999999999999999888765

>KOG0521|consensus

Probab=97.38  E-value=0.00022  Score=56.65  Aligned_cols=49  Identities=41%  Similarity=0.664  Sum_probs=46.0

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCc
Q psy15728         89 NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        89 ~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                      ..|.++||.|+..+....+.+|++.|+++|.++..|++|+|.+...|+.
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~  702 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHT  702 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhccc
Confidence            4478999999999999999999999999999999999999999998875

>KOG0506|consensus

Probab=97.32  E-value=0.00012  Score=54.29  Aligned_cols=62  Identities=29%  Similarity=0.443  Sum_probs=53.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCC
Q psy15728         44 SVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG  114 (139)
Q Consensus        44 ~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~g  114 (139)
                      .+.+..|.||.|+..|+++.++.||+...     ++.+    .+|..|+|||--|...+|.+++++|-+..
T Consensus       535 ~DyD~RTaLHvAAaEG~v~v~kfl~~~~k-----v~~~----~kDRw~rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  535 KDYDDRTALHVAAAEGHVEVVKFLLNACK-----VDPD----PKDRWGRTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             cccccchhheeecccCceeHHHHHHHHHc-----CCCC----hhhccCCCcchHhHhcCcHHHHHHHHHHh
Confidence            45677999999999999999999998763     4444    68999999999999999999999998743

>KOG0511|consensus

Probab=97.24  E-value=0.00054  Score=49.66  Aligned_cols=46  Identities=33%  Similarity=0.520  Sum_probs=43.2

Q ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCc
Q psy15728         92 WTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        92 ~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                      .--|..||+.|-.+.+++|++.|.++|+.|.....||.+|+..||+
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe   82 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHE   82 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcH
Confidence            4468899999999999999999999999999999999999999986

>KOG2384|consensus

Probab=96.91  E-value=0.0041  Score=41.12  Aligned_cols=64  Identities=13%  Similarity=0.079  Sum_probs=54.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhc-ccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Q psy15728         44 SVKEIHELFLYNCRNGQLDKIKQLLDHC-KENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDI  117 (139)
Q Consensus        44 ~~~~~~~~l~~a~~~g~~~~~~~ll~~~-~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~  117 (139)
                      .+.-++|+++.|+..|..+.+.+|+.++ +.++          ..|..+.+.+.+|-..|..+++..|.+.-.+-
T Consensus         8 rD~fgWTalmcaa~eg~~eavsyllgrg~a~vg----------v~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    8 RDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVG----------VTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             hhhhcchHHHHHhhhcchhHHHHHhccCccccc----------ccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            3456799999999999999999999998 4443          57899999999999999999999998864443

>KOG3609|consensus

Probab=96.44  E-value=0.023  Score=45.18  Aligned_cols=71  Identities=21%  Similarity=0.250  Sum_probs=49.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccc-cccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcC
Q psy15728         49 HELFLYNCRNGQLDKIKQLLDHCKEN-NVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAV  120 (139)
Q Consensus        49 ~~~l~~a~~~g~~~~~~~ll~~~~~~-~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~  120 (139)
                      ...|.+|+..|.+..+..++.+.... +... ........-..+.|||++||..++.+|+++|+.+|+.+...
T Consensus        89 gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~-~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   89 GDALLLAIAVGSVPLVELLLVHFVDAPYLER-SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccccchhcc-ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            56778888888888888877653211 1111 00011123445789999999999999999999999997654

>KOG3609|consensus

Probab=96.41  E-value=0.008  Score=47.66  Aligned_cols=87  Identities=24%  Similarity=0.253  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC---------
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDI---------  117 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~---------  117 (139)
                      .....+..++.+|+...+++++.......  .+++    ..|..|+++++.|....+.+++.+|++.....         
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~--lnin----c~d~lGr~al~iai~nenle~~eLLl~~~~~~gdALL~aI~   97 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSK--LNIN----CRDPLGRLALHIAIDNENLELQELLLDTSSEEGDALLLAIA   97 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccc--cchh----ccChHhhhceecccccccHHHHHHHhcCccccchHHHHHHH
Confidence            34556789999999999999999876522  3333    57999999999999999998888888764211         


Q ss_pred             ---------------------------CcCCCCCCcHHHHHHHhCCccC
Q psy15728        118 ---------------------------NAVNDAGDTPLHKAAFVGREVG  139 (139)
Q Consensus       118 ---------------------------~~~~~~g~tpl~~A~~~g~~~c  139 (139)
                                                 ...-.-+-|||..||..++.+|
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEi  146 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEI  146 (822)
T ss_pred             HHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHH
Confidence                                       0112345699999999888765

>smart00248 ANK ankyrin repeats

Probab=95.56  E-value=0.014  Score=24.95  Aligned_cols=25  Identities=28%  Similarity=0.349  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcc
Q psy15728         48 IHELFLYNCRNGQLDKIKQLLDHCK   72 (139)
Q Consensus        48 ~~~~l~~a~~~g~~~~~~~ll~~~~   72 (139)
                      +.+++|+++..++.++++.++..+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            3578999999999999999998764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=95.13  E-value=0.023  Score=42.85  Aligned_cols=51  Identities=24%  Similarity=0.408  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHH
Q psy15728         48 IHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL  111 (139)
Q Consensus        48 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll  111 (139)
                      ..|+||+|+..|+-.++.++|..+.++      .    .+|..|+||..++.   +.++-..++
T Consensus       430 tsT~LH~aa~qg~~k~v~~~Leeg~Dp------~----~kd~~Grtpy~ls~---nkdVk~~F~  480 (591)
T KOG2505|consen  430 TSTFLHYAAAQGARKCVKYFLEEGCDP------S----TKDGAGRTPYSLSA---NKDVKSIFI  480 (591)
T ss_pred             cchHHHHHHhcchHHHHHHHHHhcCCc------h----hcccCCCCcccccc---cHHHHHHHH
Confidence            479999999999999999999998333      2    68999999999876   455444443

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.27  E-value=0.74  Score=25.75  Aligned_cols=48  Identities=17%  Similarity=0.247  Sum_probs=39.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhC
Q psy15728         49 HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ  113 (139)
Q Consensus        49 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~  113 (139)
                      ...+..|...|+.++++.++....              .   ...++..|....+-+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~--------------~---~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNK--------------P---DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhc--------------c---HHHHHHHHHHHhhHHHHHHHHHh
Confidence            567899999999999999985441              1   24579999999999999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=89.73  E-value=0.92  Score=31.24  Aligned_cols=31  Identities=32%  Similarity=0.354  Sum_probs=26.1

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC
Q psy15728         86 SKSNLGWTPLHLASYFGHKSVVEFLLDQGVD  116 (139)
Q Consensus        86 ~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~  116 (139)
                      .+.+.|.|-|--|..++..+++.+|++.||-
T Consensus       249 ~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  249 QKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             hccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            4667788889999999999999999988884

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=88.56  E-value=1.4  Score=29.31  Aligned_cols=48  Identities=13%  Similarity=0.212  Sum_probs=40.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHh
Q psy15728         49 HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD  112 (139)
Q Consensus        49 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~  112 (139)
                      ..-|.+|+..|-+.+|...|..|+..                ..+.|..|+.+++-.++.+++.
T Consensus       144 ~~hl~~a~~kgll~F~letlkygg~~----------------~~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  144 TQHLEKAAAKGLLPFVLETLKYGGNV----------------DIIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHcCCcc----------------cHHHHHHHHHhhHHHHHHHhhc
Confidence            45678999999999999999888422                2389999999999999999875

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-12
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-11
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-11
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-11
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-11
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		4e-11
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		5e-11
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		6e-11
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		7e-11
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-10
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-10
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-09
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-09
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-09
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-09
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-09
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-09
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-09
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		3e-09
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-09
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-09
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-09
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-09
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		4e-09
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		4e-09
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		4e-09
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-09
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		6e-09
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-09
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		1e-08
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-08
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-08
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		4e-08
1uoh_A	226	Human Gankyrin Length = 226		4e-08
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-08
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-08
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-08
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		8e-08
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-07
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		1e-07
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-07
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		5e-07
2xen_A	91	Structural Determinants For Improved Thermal Stabil		2e-06
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		1e-05
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		2e-05
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		2e-05
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		2e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		4e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		5e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		5e-05
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		5e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		5e-05
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		7e-05
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		7e-05
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		8e-05
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		9e-05
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		9e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		9e-05
1ycs_B	239	P53-53bp2 Complex Length = 239		1e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		1e-04
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-04
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		6e-04
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		8e-04

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 48/81 (59%), Gaps = 10/81 (12%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N S       ++GWTPLHLA+YFGH  +VE LL
Sbjct: 18  LLEAARAGQDDEVRILM----ANGADVNASD------HVGWTPLHLAAYFGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAA 132
             G D+NA +  G TPLH AA
Sbjct: 68  KNGADVNADDSLGVTPLHLAA 88

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R G+ D+++ L+     N  ++N      +   +GWTPLHLA+Y+GH  +VE LL
Sbjct: 18  LLEAARAGRDDEVRILM----ANGADVN------AADVVGWTPLHLAAYWGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
             G D+NA +  G TPLH AA  G
Sbjct: 68  KNGADVNAYDTLGSTPLHLAAHFG 91

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N      ++   GWTPLHLA++FGH  +VE LL
Sbjct: 18  LLEAARAGQDDEVRILM----ANGADVN------ARDFTGWTPLHLAAHFGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAA 132
             G D+NA +  G TPLH AA
Sbjct: 68  KNGADVNAKDSLGVTPLHLAA 88

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N +         G TPLHLA+ +GH  +VE LL
Sbjct: 18  LLEAARAGQDDEVRILM----ANGADVNATDAS------GLTPLHLAATYGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
             G D+NA++  G TPLH AA +G
Sbjct: 68  KHGADVNAIDIMGSTPLHLAALIG 91

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N +         G TPLHLA+ +GH  +VE LL
Sbjct: 18  LLEAARAGQDDEVRILM----ANGADVNATDAS------GLTPLHLAATYGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
             G D+NA++  G TPLH AA +G
Sbjct: 68  KHGADVNAIDIXGSTPLHLAALIG 91

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N      +K   G TPL+LA+  GH  +VE LL
Sbjct: 18  LLEAARAGQDDEVRILM----ANGADVN------AKDEYGLTPLYLATAHGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
             G D+NAV+  G TPLH AAF+G
Sbjct: 68  KNGADVNAVDAIGFTPLHLAAFIG 91

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N      +    G TPLHL    GH  ++E LL
Sbjct: 18  LLEAARAGQDDEVRILM----ANGADVN------ANDWFGITPLHLVVNNGHLEIIEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
               D+NA + +G TPLH AA+ G
Sbjct: 68  KYAADVNASDKSGWTPLHLAAYRG 91

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 52/124 (41%), Gaps = 31/124 (25%)
Query: 32  TPNSLSAELNQLSVKEIHELFLYN------------------CRNGQLDKIKQLLDHCKE 73
           TP  L+A   QL   EI E+ L N                    +G L+ ++ LL H  +
Sbjct: 41  TPLHLAAANGQL---EIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD 97
Query: 74  NNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAF 133
            N          +    GWTPLHLA+  G   +VE LL  G D+NA +  G T    +  
Sbjct: 98  VN----------AYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISIN 147
Query: 134 VGRE 137
            G+E
Sbjct: 148 QGQE 151

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R G+ D+++ L+     N  ++N     E  S  GWTPLHLA++ GH  +VE LL
Sbjct: 18  LLEAARAGRDDEVRILM----ANGADVN----AEDAS--GWTPLHLAAFNGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
             G D+NAV+ AG TPL  AA  G
Sbjct: 68  KNGADVNAVDHAGMTPLRLAALFG 91

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N      ++ + G TPLHLA+  GH  +VE LL
Sbjct: 18  LLEAARAGQDDEVRILM----ANGADVN------AEDDSGKTPLHLAAIKGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
             G D+NA +  GDTPLH AA  G
Sbjct: 68  KHGADVNAADKMGDTPLHLAALYG 91

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N      +  N G TPLHLA+Y GH  +VE LL
Sbjct: 18  LLEAARAGQDDEVRILM----ANGADVN------AADNTGTTPLHLAAYSGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
             G D++A +  G TPLH AA+ G
Sbjct: 68  KHGADVDASDVFGYTPLHLAAYWG 91

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N      +  N G+TPLHLA+  GH  +VE LL
Sbjct: 18  LLEAARAGQDDEVRILM----ANGADVN------ATDNDGYTPLHLAASNGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
             G D+NA +  G TPLH AA  G
Sbjct: 68  KNGADVNASDLTGITPLHLAAATG 91

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
           + CR G+   ++ L+         IN+  +G+       TPLHLA+  GH+ +V+ LL  
Sbjct: 45  WACREGRSAVVEMLI----MRGARINVMNRGDD------TPLHLAASHGHRDIVQKLLQY 94
Query: 114 GVDINAVNDAGDTPLHKAAFVGRE 137
             DINAVN+ G+ PLH A F G++
Sbjct: 95  KADINAVNEHGNVPLHYACFWGQD 118

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N   K      +G TPLHLA+   H  +VE LL
Sbjct: 18  LLEAARAGQDDEVRILM----ANGADVNAEDK------VGLTPLHLAAMNDHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
             G D+NA++  G+TPLH  A  G
Sbjct: 68  KNGADVNAIDAIGETPLHLVAMYG 91

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
           + CR G+   ++ L+         IN+  +G+       TPLHLA+  GH+ +V+ LL  
Sbjct: 40  WACREGRSAVVEMLI----MRGARINVMNRGDD------TPLHLAASHGHRDIVQKLLQY 89
Query: 114 GVDINAVNDAGDTPLHKAAFVGRE 137
             DINAVN+ G+ PLH A F G++
Sbjct: 90  KADINAVNEHGNVPLHYACFWGQD 113

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N      +  + G TPLHLA+  GH  +VE LL
Sbjct: 18  LLEATRAGQDDEVRILM----ANGADVN------AMDDAGVTPLHLAAKRGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
             G D+NA +  G TPLH AA VG
Sbjct: 68  KHGADVNASDSWGRTPLHLAATVG 91

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 60/120 (50%), Gaps = 11/120 (9%)
Query: 26  SSSEEETPNSLSAELNQLSVKEIHELFLYNCR--NGQLDKIKQLLDHCKENN----VEIN 79
           S S+ +TP  L+AE      KE+ +L L      N +    K  L    EN     V++ 
Sbjct: 33  SDSDGKTPLHLAAENGH---KEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 89
Query: 80  LSQKGE--SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
           LSQ  +  +K + G TPLHLA+  GHK VV+ LL QG D N  +  G TPL  A   G E
Sbjct: 90  LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNE 149

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N      +K   G+TPLHLA+  GH  +VE LL
Sbjct: 6   LLEAARAGQDDEVRILM----ANGADVN------AKDKDGYTPLHLAAREGHLEIVEVLL 55
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
             G D+NA +  G TPLH AA  G
Sbjct: 56  KAGADVNAKDKDGYTPLHLAAREG 79

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 10/81 (12%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N      ++   G TPLHLA+  GH  +VE LL
Sbjct: 18  LLEAARAGQDDEVRILM----ANGADVN------AEDTYGDTPLHLAARVGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAA 132
             G D+NA++ +G TPLH AA
Sbjct: 68  KNGADVNALDFSGSTPLHLAA 88

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N      +K   G+TPLHLA+  GH  +VE LL
Sbjct: 18  LLEAARAGQDDEVRILM----ANGADVN------AKDKDGYTPLHLAAREGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
             G D+NA +  G TPLH AA  G
Sbjct: 68  KAGADVNAKDKDGYTPLHLAAREG 91

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N      +  N G TPLHLA+  GH  +VE LL
Sbjct: 18  LLEAARAGQDDEVRILI----ANGADVN------AVDNTGLTPLHLAAVSGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
             G D++A +  G TPLH AA  G
Sbjct: 68  KHGADVDAADVYGFTPLHLAAMTG 91

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N      +K   G+TPLHLA+  GH  +VE LL
Sbjct: 6   LLEAARAGQDDEVRILM----ANGADVN------AKDKDGYTPLHLAAREGHLEIVEVLL 55
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
             G D+NA +  G TPLH AA  G
Sbjct: 56  KAGADVNAKDKDGYTPLHLAAREG 79

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+ +  + N          +  + G TPLH+A+  GH  +VE LL
Sbjct: 6   LLEAARAGQDDEVRILMANGADAN----------AYDHYGRTPLHMAAAVGHLEIVEVLL 55
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
             G D+NAV+  G TPLH AA +G
Sbjct: 56  RNGADVNAVDTNGTTPLHLAASLG 79

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N      +  + G TPLHLA+  GH  +VE LL
Sbjct: 18  LLEATRAGQDDEVRILM----ANGADVN------AMDDAGVTPLHLAAKRGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
             G D+NA +  G TPLH AA VG
Sbjct: 68  KHGADVNASDIWGRTPLHLAATVG 91

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            RNG L+ +K LL    E   ++N   K       G TPLHLA+  GH  VV+ LL+ G 
Sbjct: 10  ARNGHLEVVKLLL----EAGADVNAKDKN------GRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 116 DINAVNDAGDTPLHKAAFVG 135
           D+NA +  G TPLH AA  G
Sbjct: 60  DVNAKDKNGRTPLHLAARNG 79

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N      +  + G TPLHLA+  GH  +VE LL
Sbjct: 18  LLEATRAGQDDEVRILM----ANGADVN------AMDDAGVTPLHLAAKRGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
             G D+NA +  G TPLH AA VG
Sbjct: 68  KHGADVNARDIWGRTPLHLAATVG 91

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            RNG L+ +K LL    E   ++N   K       G TPLHLA+  GH  VV+ LL+ G 
Sbjct: 10  ARNGHLEVVKLLL----EAGADVNAKDKN------GRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 116 DINAVNDAGDTPLHKAA 132
           D+NA +  G TPLH AA
Sbjct: 60  DVNAKDKNGRTPLHLAA 76

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L      N  ++N      +    G TPLHLA+  GH  +VE LL
Sbjct: 18  LLEAARAGQDDEVRIL----TANGADVN------ANDYWGHTPLHLAAMLGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAF 133
             G D+NA  + G TPLH AA+
Sbjct: 68  KNGADVNATGNTGRTPLHLAAW 89

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N      +  + G TPLHLA++ GH  +VE LL
Sbjct: 18  LLEAARAGQDDEVRILM----ANGADVN------AHDDQGSTPLHLAAWIGHPEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAA 132
             G D+NA +  G TPLH AA
Sbjct: 68  KHGADVNARDTDGWTPLHLAA 88

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N   +       G TPLHLA+  GH  +VE LL
Sbjct: 18  LLEAARAGQDDEVRILM----ANGADVNALDED------GLTPLHLAAQLGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
             G D+NA ++ G TPLH AA  G
Sbjct: 68  KYGADVNAEDNFGITPLHLAAIRG 91

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N + +       G TPLHLA+ + H  +VE LL
Sbjct: 18  LLEAARAGQDDEVRILM----ANGADVNANDRK------GNTPLHLAADYDHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
             G D+NA ++ G TPLH AA  G
Sbjct: 68  KHGADVNAHDNDGSTPLHLAALFG 91

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N      +   LG TPLHLA+  GH  +VE LL
Sbjct: 18  LLEAARAGQDDEVRILM----ANGADVN------ATDWLGHTPLHLAAKTGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAA 132
             G D+NA ++ G TPLH AA
Sbjct: 68  KYGADVNAWDNYGATPLHLAA 88

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 35  SLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTP 94
           SL+   +Q S   +H    + C  G  + ++ LL    +  V +N       K + GW+P
Sbjct: 32  SLATRTDQDSRTALH----WACSAGHTEIVEFLL----QLGVPVN------DKDDAGWSP 77
Query: 95  LHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
           LH+A+  G   +V+ LL +G  +NAVN  G TPLH AA   R
Sbjct: 78  LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR 119

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 35  SLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTP 94
           SL+   +Q S   +H    + C  G  + ++ LL    +  V +N       K + GW+P
Sbjct: 31  SLATRTDQDSRTALH----WACSAGHTEIVEFLL----QLGVPVN------DKDDAGWSP 76
Query: 95  LHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
           LH+A+  G   +V+ LL +G  +NAVN  G TPLH AA   R
Sbjct: 77  LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR 118

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 23/114 (20%)
Query: 45  VKEIHELFLYNCRNGQLDKIKQLLD-----------------HCKENN----VEINLSQK 83
           + E+ +  +    NG  D++K L++                 H  EN     V++ +S+ 
Sbjct: 1   MSELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG 60
Query: 84  GE--SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
            +  +K + G TPLH A+  GHK VV+ L+ +G D+NA +  G TPLH AA  G
Sbjct: 61  ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG 114

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 23/114 (20%)
Query: 45  VKEIHELFLYNCRNGQLDKIKQLLDH------------------CKENNVEIN--LSQKG 84
           + E+ +  +    NG  D++K L+++                   KE + EI   L  KG
Sbjct: 1   MSELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG 60
Query: 85  E---SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
               +K + G TPLH A+  GHK +V+ L+ +G D+NA +  G TPLH AA  G
Sbjct: 61  ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEG 114

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 23/114 (20%)
Query: 45  VKEIHELFLYNCRNGQLDKIKQLLDHCKENN---------------------VEINLSQK 83
           + E+ +  +    NG  D++K LL++  + N                     V++ LS+ 
Sbjct: 1   MSELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKG 60
Query: 84  GE--SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
            +  +K + G TPLH A+  GHK +V+ LL +G D NA +  G TPLH AA  G
Sbjct: 61  ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENG 114

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 35  SLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTP 94
           SL+   +Q S   +H    + C  G  + ++ LL    +  V +N       K + GW+P
Sbjct: 31  SLATRTDQDSRTALH----WACSAGHTEIVEFLL----QLGVPVN------DKDDAGWSP 76
Query: 95  LHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
           LH+A+  G   +V+ LL +G  +NAVN  G TPLH AA   R
Sbjct: 77  LHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR 118

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 35  SLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTP 94
           SL+   +Q S   +H    + C  G  + ++ LL    +  V +N       K + GW+P
Sbjct: 31  SLATRTDQDSRTALH----WACSAGHTEIVEFLL----QLGVPVN------DKDDAGWSP 76
Query: 95  LHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
           LH+A+  G   +V+ LL +G  +NAVN  G TPLH AA   R
Sbjct: 77  LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR 118

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 23/101 (22%)
Query: 51  LFLYNCRNGQLDKIKQLLDH------------------CKENNVEIN--LSQKGES---K 87
           +FL  C +G  +++ +LL+                   C ++NV++   L + G +    
Sbjct: 43  VFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP 102
Query: 88  SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
            N GW PLH A+  G+  + E+L+ QG  + AVN  GDTPL
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL 143

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R G  + +K LL    ENN   NL+      +  G TPLH+A+  GH   V  LL++  
Sbjct: 88  ARIGHTNMVKLLL----ENNANPNLA------TTAGHTPLHIAAREGHVETVLALLEKEA 137
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
               +   G TPLH AA  G+
Sbjct: 138 SQACMTKKGFTPLHVAAKYGK 158

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 11/80 (13%)
Query: 53  LYNC-RNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
           L+N  +NG  +++K+LL    + N          ++S  G TPLHLA+  GH  +V+ LL
Sbjct: 13  LHNAAKNGHAEEVKKLLSKGADVN----------ARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 112 DQGVDINAVNDAGDTPLHKA 131
            +G D+NA +  G+TP H A
Sbjct: 63  AKGADVNARSKDGNTPEHLA 82

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++N      +K   G+TPLHLA+  GH  +VE LL
Sbjct: 6   LLEAARAGQDDEVRILM----ANGADVN------AKDKDGYTPLHLAAREGHLEIVEVLL 55
Query: 112 DQGVDINAVNDAGDTPL 128
             G D+NA +  G T  
Sbjct: 56  KAGADVNAQDKFGKTAF 72

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 59  GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDIN 118
           G +  ++ LL +  + NV          K + GWTPLH A   GH  VVE LL     +N
Sbjct: 21  GDIPSVEYLLQNGSDPNV----------KDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70
Query: 119 AVNDAGDTPLHKAA 132
                 D+PLH AA
Sbjct: 71  TTGYQNDSPLHDAA 84

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
           F++  +NG LD++K   D+  +   ++N + +G      G  PLH A+  G   ++EFLL
Sbjct: 6   FMWALKNGDLDEVK---DYVAKGE-DVNRTLEG------GRKPLHYAADCGQLEILEFLL 55
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
            +G DINA +    TPL  A + G
Sbjct: 56  LKGADINAPDKHHITPLLSAVYEG 79

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
           F++  +NG LD++K   D+  +   ++N + +G      G  PLH A+  G   ++EFLL
Sbjct: 11  FMWALKNGDLDEVK---DYVAKGE-DVNRTLEG------GRKPLHYAADCGQLEILEFLL 60
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
            +G DINA +    TPL  A + G
Sbjct: 61  LKGADINAPDKHHITPLLSAVYEG 84

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
           +  R G L  + QL+ +  + ++       GE     G + +HLA+ FGH S+V +L+ +
Sbjct: 82  WATRQGHLSMVVQLMKYGADPSL-----IDGE-----GCSCIHLAAQFGHTSIVAYLIAK 131
Query: 114 GVDINAVNDAGDTPLHKAAF 133
           G D++ ++  G TPL  AA+
Sbjct: 132 GQDVDMMDQNGMTPLMWAAY 151

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 90  LGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
           LG +PLHLA+ +GH S  E LL  GV  +A      TPLH AA  G
Sbjct: 33  LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG 78

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 28/120 (23%)
Query: 17  THDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNV 76
           T   V  R     + TP   +A  N++SV                  ++ LL H      
Sbjct: 31  TVQSVNCRDIEGRQSTPLHFAAGYNRVSV------------------VEYLLQH----GA 68
Query: 77  EINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
           +++   KG      G  PLH A  +GH  V E L+  G  +N  +    TPLH+AA  G+
Sbjct: 69  DVHAKDKG------GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 122

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 28/120 (23%)
Query: 17  THDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNV 76
           T   V  R     + TP   +A  N++SV                  ++ LL H      
Sbjct: 29  TVQSVNCRDIEGRQSTPLHFAAGYNRVSV------------------VEYLLQH----GA 66
Query: 77  EINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
           +++   KG      G  PLH A  +GH  V E L+  G  +N  +    TPLH+AA  G+
Sbjct: 67  DVHAKDKG------GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 120

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 28/120 (23%)
Query: 17  THDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNV 76
           T   V  R     + TP   +A  N++SV                  ++ LL H      
Sbjct: 33  TVQSVNCRDIEGRQSTPLHFAAGYNRVSV------------------VEYLLQH----GA 70
Query: 77  EINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
           +++   KG      G  PLH A  +GH  V E L+  G  +N  +    TPLH+AA  G+
Sbjct: 71  DVHAKDKG------GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 124

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++       +K   G TPLHLA+  GH  VV+ LL
Sbjct: 10  LLEAARAGQDDEVRILM----ANGADV------AAKDKNGSTPLHLAARNGHLEVVKLLL 59
Query: 112 DQGVDINAVNDAGDTPL 128
           + G D+NA +  G T  
Sbjct: 60  EAGADVNAQDKFGKTAF 76

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 21/87 (24%)
Query: 49  HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVE 108
           +E+  Y   NGQ+D               +N    G      GWTP+  A+ + H  +V+
Sbjct: 90  YEVVQYLLSNGQMD---------------VNCQDDG------GWTPMIWATEYKHVDLVK 128
Query: 109 FLLDQGVDINAVNDAGDTPLHKAAFVG 135
            LL +G DIN  ++  +  LH AAF G
Sbjct: 129 LLLSKGSDINIRDNEENICLHWAAFSG 155

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
           C+ G    +K LLD           + K   K   G TPL  A   GH  +V  LL  G 
Sbjct: 127 CQQGHFQVVKCLLDS----------NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGA 176
Query: 116 DINAVNDAGDTPLHKAAF 133
            INA N+ G+T LH+A  
Sbjct: 177 SINASNNKGNTALHEAVI 194

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 21  VRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINL 80
           + +R  ++ +E P S S    + +V++ H L +   +N  +D ++QLL    E    +N 
Sbjct: 1   MESRDHNNPQEGPTSSSGR--RAAVEDNH-LLIKAVQNEDVDLVQQLL----EGGANVNF 53
Query: 81  SQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
            ++       GWTPLH A     + +VE LL  G D       G TP   AA  G
Sbjct: 54  QEE-----EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG 103

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 86  SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
           +K   G  PLH A  +GH  V E LL  G  +NA++    TPLH+AA   R
Sbjct: 86  AKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR 136

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 22/132 (16%)
Query: 1   MTSKHGRIKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQ 60
           M    G++   PG  RT+     R + SE    + +  + N L+      L L +   G+
Sbjct: 2   MPEITGQVSLPPG-KRTN----LRKTGSER-IAHGMRVKFNPLA------LLLDSSLEGE 49
Query: 61  LDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAV 120
            D +++++    + ++           ++ G T LH A   GH  +V+FL+  GV++NA 
Sbjct: 50  FDLVQRIIYEVDDPSL----------PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 99
Query: 121 NDAGDTPLHKAA 132
           +  G TPLH AA
Sbjct: 100 DSDGWTPLHCAA 111

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 68  LDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-GVDINAVNDAGDT 126
           L  C +N V +N   K  S      T L+ A + GHK +VE L  Q  +++N  N  GDT
Sbjct: 89  LRECLDNRVGVNGLDKAGS------TALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDT 142
Query: 127 PLHKAAFVG 135
            LH AA+ G
Sbjct: 143 ALHAAAWKG 151

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 19/121 (15%)
Query: 12  PGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHC 71
           P G RT+     R + SE    + +  + N L +     L L +   G+ D +++++   
Sbjct: 10  PPGKRTN----LRKTGSER-IAHGMRVKFNPLPLA----LLLDSSLEGEFDLVQRIIYEV 60
Query: 72  KENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
            + ++           ++ G T LH A   GH  +V+FL+  GV++NA +  G TPLH A
Sbjct: 61  DDPSL----------PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCA 110
Query: 132 A 132
           A
Sbjct: 111 A 111

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-G 114
            R GQLD ++ LL+   + N+E           N G  PLHLA+  GH  VVEFL+    
Sbjct: 78  ARAGQLDTLQTLLEFQADVNIE----------DNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 115 VDINAVNDAGDTPLHKAAFVGR 136
            ++   N  GDT    A   GR
Sbjct: 128 SNVGHRNHKGDTACDLARLYGR 149

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L   R GQ D+++ L+     N  ++       +K   G TPLHLA+  GH  VV+ LL
Sbjct: 28  LLEAARAGQDDEVRILM----ANGADV------AAKDKNGSTPLHLAARNGHLEVVKLLL 77
Query: 112 DQGVDINAVNDAGDTPL 128
           + G D+ A +  G T  
Sbjct: 78  EAGADVXAQDKFGKTAF 94

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 51  LFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFL 110
           L +   +N  +D ++QLL    E    +N  ++       GWTPLH A     + +VE L
Sbjct: 8   LLIKAVQNEDVDLVQQLL----EGGANVNFQEE-----EGGWTPLHNAVQMSREDIVELL 58
Query: 111 LDQGVDINAVNDAGDTPLHKAAFVG 135
           L  G D       G TP   AA  G
Sbjct: 59  LRHGADPVLRKKNGATPFLLAAIAG 83

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R G LD ++ LL    EN  ++N+      + N G  PLHLA+  GH  VVEFL+    
Sbjct: 78  ARAGFLDTLQTLL----ENQADVNI------EDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 116 -DINAVNDAGDTPLHKAAFVGR 136
            ++   N  GDT    A   GR
Sbjct: 128 SNVGHRNHKGDTACDLARLYGR 149

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-22
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-20
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-18
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-22
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-21
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-13
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-21
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-16
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-22
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-20
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-21
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-20
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-18
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-21
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-20
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-19
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-21
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-19
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-18
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-14
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-20
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-17
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-17
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-20
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-18
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-20
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-20
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-18
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-18
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-20
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-18
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-20
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-18
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-14
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-19
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-19
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-19
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-19
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-16
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-19
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-18
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-19
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-19
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-18
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-18
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-18
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-19
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-18
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-19
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-16
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-18
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-19
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-19
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-19
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-13
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-17
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-17
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-16
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-18
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-14
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-18
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-18
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-17
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-17
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-15
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-15
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-17
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-07
2rfa_A	232	Transient receptor potential cation channel subfa	7e-17
2rfa_A	232	Transient receptor potential cation channel subfa	4e-14
2rfa_A	232	Transient receptor potential cation channel subfa	2e-12
2rfa_A	232	Transient receptor potential cation channel subfa	8e-12
2rfa_A	232	Transient receptor potential cation channel subfa	2e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-06
2pnn_A	273	Transient receptor potential cation channel subfa	8e-16
2pnn_A	273	Transient receptor potential cation channel subfa	1e-15
2pnn_A	273	Transient receptor potential cation channel subfa	2e-11
2pnn_A	273	Transient receptor potential cation channel subfa	1e-09
2pnn_A	273	Transient receptor potential cation channel subfa	5e-09
2etb_A	256	Transient receptor potential cation channel subfam	1e-15
2etb_A	256	Transient receptor potential cation channel subfam	9e-15
2etb_A	256	Transient receptor potential cation channel subfam	2e-14
2etb_A	256	Transient receptor potential cation channel subfam	1e-10
2etb_A	256	Transient receptor potential cation channel subfam	2e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-05

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 83.6 bits (208), Expect = 5e-22
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 10/81 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            +NG LD++K  +        ++N           G  PLH A+  G   ++EFLL +G 
Sbjct: 15  LKNGDLDEVKDYV----AKGEDVN------RTLEGGRKPLHYAADCGQLEILEFLLLKGA 64

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
           DINA +    TPL  A + G 
Sbjct: 65  DINAPDKHHITPLLSAVYEGH 85

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 79.7 bits (198), Expect = 1e-20
 Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 10/77 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              GQL+ ++ LL        +IN      +      TPL  A Y GH S V+ LL +G 
Sbjct: 48  ADCGQLEILEFLLLK----GADIN------APDKHHITPLLSAVYEGHVSCVKLLLSKGA 97

Query: 116 DINAVNDAGDTPLHKAA 132
           D       G T      
Sbjct: 98  DKTVKGPDGLTAFEATD 114

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 74.4 bits (184), Expect = 2e-18
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 89  NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
           ++       A   G    V+  + +G D+N   + G  PLH AA  G+
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQ 52

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 84.7 bits (211), Expect = 5e-22
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G++  +   ++        IN           G+TPL  A+  G  +VVEFLL  G 
Sbjct: 11  AAQGEMLYLATRIEQ----ENVIN------HTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           D   +    ++ L  A   G  
Sbjct: 61  DPQLLGKGRESALSLACSKGYT 82

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 82.4 bits (205), Expect = 5e-21
 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
           C  G  D +K LLD      V++N           G TPL  A +  H   V+ LL+ G 
Sbjct: 77  CSKGYTDIVKMLLDC----GVDVN------EYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           D     D+G   +  A  +G  
Sbjct: 127 DPTIETDSGYNSMDLAVALGYR 148

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 72.0 bits (178), Expect = 4e-17
 Identities = 12/47 (25%), Positives = 20/47 (42%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
               +H  +  G    +   ++Q   IN  ++ G TPL  AA  G+ 
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQI 49

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 60.9 bits (149), Expect = 9e-13
 Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 10/67 (14%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
                +  +K LL+       +         +++ G+  + LA   G++SV + +    +
Sbjct: 110 VHGNHVKCVKMLLES----GADPT------IETDSGYNSMDLAVALGYRSVQQVIESHLL 159

Query: 116 DINAVND 122
            +     
Sbjct: 160 KLLQNIK 166

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 84.8 bits (211), Expect = 6e-22
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 9/82 (10%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G+LD++K+ L      +  +N           G+TPL  AS FG    V FLL+ G 
Sbjct: 10  AAQGELDQLKEHLRK---GDNLVN------KPDERGFTPLIWASAFGEIETVRFLLEWGA 60

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           D + +    ++ L  A+  G  
Sbjct: 61  DPHILAKERESALSLASTGGYT 82

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 83.6 bits (208), Expect = 2e-21
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G  D +  LL+     +V+IN           G TPL  A    H   VE LL +G 
Sbjct: 77  STGGYTDIVGLLLER----DVDIN------IYDWNGGTPLLYAVRGNHVKCVEALLARGA 126

Query: 116 DINAVNDAGDTPLHKAAFVG 135
           D+    D+G TP+  A  +G
Sbjct: 127 DLTTEADSGYTPMDLAVALG 146

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 70.1 bits (173), Expect = 3e-16
 Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 10/72 (13%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R   +  ++ LL        ++       ++++ G+TP+ LA   G++ V + + +  +
Sbjct: 110 VRGNHVKCVEALLAR----GADLT------TEADSGYTPMDLAVALGYRKVQQVIENHIL 159

Query: 116 DINAVNDAGDTP 127
            +   N     P
Sbjct: 160 KLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 65.9 bits (162), Expect = 1e-14
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVD-INAVNDAGDTPLHKAAFVG 135
               +H  +  G    ++  L +G + +N  ++ G TPL  A+  G
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG 47

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 84.8 bits (211), Expect = 8e-22
 Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 24/106 (22%)

Query: 56  CRNGQLDKIKQLLDH-------------------CKENNVEI--NLSQKG---ESKSNLG 91
           CR G    ++  LD+                   C+E    +   L  +G      +   
Sbjct: 13  CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 72

Query: 92  WTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
            TPLHLA+  GH+ +V+ LL    DINAVN+ G+ PLH A F G++
Sbjct: 73  DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 80.9 bits (201), Expect = 2e-20
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
             +G  D +++LL +      +IN      + +  G  PLH A ++G   V E L+  G 
Sbjct: 80  ASHGHRDIVQKLLQY----KADIN------AVNEHGNVPLHYACFWGQDQVAEDLVANGA 129

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
            ++  N  G+ P+ KA    RE
Sbjct: 130 LVSICNKYGEMPVDKAKAPLRE 151

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 67.1 bits (165), Expect = 4e-15
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 88  SNLGWTPLHLASYFGHKSVVEFLLDQG-VDINAVNDAGDTPLHKAAFVGR 136
           S      +      G+   V   LD    D+N  +D G +PLH A   GR
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGR 51

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 61.3 bits (150), Expect = 7e-13
 Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 16/81 (19%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
           C  GQ    + L+ +       ++        +  G  P+  A     + + E     G 
Sbjct: 113 CFWGQDQVAEDLVAN----GALVS------ICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
           ++N        P     + G 
Sbjct: 163 NLNR------IPYKDTFWKGT 177

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 81.2 bits (202), Expect = 4e-21
 Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            RNG L+ +K LL+       ++N      +K   G TPLHLA+  GH  VV+ LL+ G 
Sbjct: 43  ARNGHLEVVKLLLEA----GADVN------AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           D+NA +  G TPLH AA  G  
Sbjct: 93  DVNAKDKNGRTPLHLAARNGHL 114

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 80.1 bits (199), Expect = 1e-20
 Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            RNG L+ +K LL+       ++N      +K   G TPLHLA+  GH  VV+ LL+ G 
Sbjct: 10  ARNGHLEVVKLLLEA----GADVN------AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           D+NA +  G TPLH AA  G  
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHL 81

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 73.1 bits (181), Expect = 6e-18
 Identities = 25/45 (55%), Positives = 30/45 (66%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
           G TPLHLA+  GH  VV+ LL+ G D+NA +  G TPLH AA  G
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 46

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 53.5 bits (130), Expect = 2e-10
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 10/59 (16%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG 114
            RNG L+ +K LL+       ++N      +K   G TPLHLA+  GH  VV+ LL+ G
Sbjct: 76  ARNGHLEVVKLLLEA----GADVN------AKDKNGRTPLHLAARNGHLEVVKLLLEAG 124

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 81.3 bits (202), Expect = 5e-21
 Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 10/81 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G +  ++ LL +      + N       K + GWTPLH A   GH  VVE LL    
Sbjct: 18  SIKGDIPSVEYLLQN----GSDPN------VKDHAGWTPLHEACNHGHLKVVELLLQHKA 67

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
            +N      D+PLH AA  G 
Sbjct: 68  LVNTTGYQNDSPLHDAAKNGH 88

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 78.6 bits (195), Expect = 6e-20
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
           C +G L  ++ LL H       +N      +      +PLH A+  GH  +V+ LL  G 
Sbjct: 51  CNHGHLKVVELLLQH----KALVN------TTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
             NAVN  G  P+        +
Sbjct: 101 SRNAVNIFGLRPVDYTDDESMK 122

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 75.9 bits (188), Expect = 8e-19
 Identities = 22/50 (44%), Positives = 28/50 (56%)

Query: 87  KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
            ++ G T LH+AS  G    VE+LL  G D N  + AG TPLH+A   G 
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGH 55

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 46.6 bits (112), Expect = 9e-08
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 11/64 (17%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            +NG +D +K LL +        N      + +  G  P+        KS++  L ++  
Sbjct: 84  AKNGHVDIVKLLLSY----GASRN------AVNIFGLRPVDYTDDESMKSLLL-LPEKNE 132

Query: 116 DINA 119
             +A
Sbjct: 133 SSSA 136

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 79.3 bits (197), Expect = 9e-21
 Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 10/80 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            RNG L+ +K LL+       ++N      +K   G TPLHLA+  GH  VV+ LL+ G 
Sbjct: 10  ARNGHLEVVKLLLEA----GADVN------AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 116 DINAVNDAGDTPLHKAAFVG 135
           D+NA +  G TPLH AA  G
Sbjct: 60  DVNAKDKNGRTPLHLAARNG 79

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 73.9 bits (183), Expect = 1e-18
 Identities = 25/45 (55%), Positives = 30/45 (66%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
           G TPLHLA+  GH  VV+ LL+ G D+NA +  G TPLH AA  G
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 46

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 52.4 bits (127), Expect = 3e-10
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 10/59 (16%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG 114
            RNG L+ +K LL+       ++N      +K   G TPLHLA+  GH  VV+ LL+ G
Sbjct: 43  ARNGHLEVVKLLLEA----GADVN------AKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 81.3 bits (202), Expect = 1e-20
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 9/81 (11%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            + G ++ +K+L       +V                TPLH A+ +   SVVE+LL  G 
Sbjct: 16  AKAGDVETVKKLCTV---QSVNCR------DIEGRQSTPLHFAAGYNRVSVVEYLLQHGA 66

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
           D++A +  G  PLH A   G 
Sbjct: 67  DVHAKDKGGLVPLHNACSYGH 87

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 76.7 bits (190), Expect = 6e-19
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 10/81 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
               ++  ++ LL H      +++      +K   G  PLH A  +GH  V E L+  G 
Sbjct: 50  AGYNRVSVVEYLLQH----GADVH------AKDKGGLVPLHNACSYGHYEVAELLVKHGA 99

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
            +N  +    TPLH+AA  G+
Sbjct: 100 VVNVADLWKFTPLHEAAAKGK 120

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 74.7 bits (185), Expect = 4e-18
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 10/77 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
           C  G  +  + L+ H       +N            +TPLH A+  G   + + LL  G 
Sbjct: 83  CSYGHYEVAELLVKH----GAVVN------VADLWKFTPLHEAAAKGKYEICKLLLQHGA 132

Query: 116 DINAVNDAGDTPLHKAA 132
           D    N  G+TPL    
Sbjct: 133 DPTKKNRDGNTPLDLVK 149

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 64.3 bits (158), Expect = 4e-14
 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 91  GWTPLHLASYFGHKSVVEFLLD-QGVDINAVNDAGDTPLHKAAFVGR 136
               L  A+  G    V+ L   Q V+   +     TPLH AA   R
Sbjct: 8   ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR 54

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 43.5 bits (104), Expect = 3e-06
 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 11/59 (18%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG 114
              G+ +  K LL H      +         K+  G TPL L    G   + + L    
Sbjct: 116 AAKGKYEICKLLLQH----GADPT------KKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 82.1 bits (204), Expect = 2e-20
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G L  + +L++  ++   E++        +NL  TPLHLA      SVV  L+  G 
Sbjct: 17  VVQGNLPAVHRLVNLFQQGGRELD------IYNNLRQTPLHLAVITTLPSVVRLLVTAGA 70

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
              A++  G T  H A     
Sbjct: 71  SPMALDRHGQTAAHLACEHRS 91

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 79.0 bits (196), Expect = 4e-19
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 7/82 (8%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
           C +     ++ LLD      +++       +++  G T LH+A     +  V+ LL++G 
Sbjct: 87  CEHRSPTCLRALLDSAAPGTLDLE------ARNYDGLTALHVAVNTECQETVQLLLERGA 140

Query: 116 DINAVN-DAGDTPLHKAAFVGR 136
           DI+AV+  +G +PL  A     
Sbjct: 141 DIDAVDIKSGRSPLIHAVENNS 162

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 77.5 bits (192), Expect = 1e-18
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 10/78 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
             N  L  ++ LL H       +N      ++   G + LH AS  G   +V  L+  G 
Sbjct: 158 VENNSLSMVQLLLQH----GANVN------AQMYSGSSALHSASGRGLLPLVRTLVRSGA 207

Query: 116 DINAVNDAGDTPLHKAAF 133
           D +  N   DTPL  A  
Sbjct: 208 DSSLKNCHNDTPLMVARS 225

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 75.2 bits (186), Expect = 1e-17
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
                 + ++ LL+       +I+           G +PL  A      S+V+ LL  G 
Sbjct: 124 VNTECQETVQLLLER----GADID-----AVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174

Query: 116 DINAVNDAGDTPLHKAAFVG 135
           ++NA   +G + LH A+  G
Sbjct: 175 NVNAQMYSGSSALHSASGRG 194

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 72.5 bits (179), Expect = 9e-17
 Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 14/84 (16%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG- 114
                   ++ L+                 +    G T  HLA      + +  LLD   
Sbjct: 54  VITTLPSVVRLLVTA----GASPM------ALDRHGQTAAHLACEHRSPTCLRALLDSAA 103

Query: 115 ---VDINAVNDAGDTPLHKAAFVG 135
              +D+ A N  G T LH A    
Sbjct: 104 PGTLDLEARNYDGLTALHVAVNTE 127

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 64.8 bits (159), Expect = 8e-14
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 86  SKSNLGWTPLHLASYFGHKSVVEFLLD----QGVDINAVNDAGDTPLHKAAFVGRE 137
                G TPLH+A   G+   V  L++     G +++  N+   TPLH A      
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP 59

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 50.5 bits (122), Expect = 1e-08
 Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 10/59 (16%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG 114
              G L  ++ L+        + +       K+    TPL +A       ++     + 
Sbjct: 191 SGRGLLPLVRTLVRS----GADSS------LKNCHNDTPLMVARSRRVIDILRGKATRP 239

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 80.5 bits (200), Expect = 3e-20
 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 10/80 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R G+ D+++ L+ +      ++N      ++   GWTPLHLA++ GH  +VE LL  G 
Sbjct: 22  ARAGRDDEVRILMAN----GADVN------AEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71

Query: 116 DINAVNDAGDTPLHKAAFVG 135
           D+NAV+ AG TPL  AA  G
Sbjct: 72  DVNAVDHAGMTPLRLAALFG 91

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 76.2 bits (189), Expect = 1e-18
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G L+ ++ LL +      ++N      +    G TPLHLA+ FGH  +VE LL  G 
Sbjct: 88  ALFGHLEIVEVLLKN----GADVN------ANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           D+NA +  G T    +   G E
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNE 159

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 70.5 bits (174), Expect = 2e-16
 Identities = 18/51 (35%), Positives = 24/51 (47%)

Query: 86  SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
              +     L  A+  G    V  L+  G D+NA + +G TPLH AAF G 
Sbjct: 9   HHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGH 59

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 45.4 bits (109), Expect = 5e-07
 Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 10/56 (17%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
              G L+ ++ LL +      ++N      ++   G T   ++   G++ + E L 
Sbjct: 121 AMFGHLEIVEVLLKN----GADVN------AQDKFGKTAFDISIDNGNEDLAEILQ 166

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 81.3 bits (202), Expect = 3e-20
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 8/80 (10%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
           C  G L+ +K L D   + ++           +N G T LHLA       V +FL++ G 
Sbjct: 80  CSVGNLEVVKSLYDRPLKPDLN--------KITNQGVTCLHLAVGKKWFEVSQFLIENGA 131

Query: 116 DINAVNDAGDTPLHKAAFVG 135
            +   +     PLH+AA VG
Sbjct: 132 SVRIKDKFNQIPLHRAASVG 151

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 75.2 bits (186), Expect = 9e-18
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 12/84 (14%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
           C   +  K+++LL         +        K   G  PLH +  F    +  FLL +  
Sbjct: 10  CMENEFFKVQELLH---SKPSLLL------QKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 116 DINA---VNDAGDTPLHKAAFVGR 136
           ++N     +D+G TP H A  VG 
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGN 84

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 74.0 bits (183), Expect = 2e-17
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 9/83 (10%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-- 113
                 +    LL         +N     +   + GWTP H+A   G+  VV+ L D+  
Sbjct: 44  VSFQAHEITSFLLSK----MENVN---LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL 96

Query: 114 GVDINAVNDAGDTPLHKAAFVGR 136
             D+N + + G T LH A     
Sbjct: 97  KPDLNKITNQGVTCLHLAVGKKW 119

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 74.0 bits (183), Expect = 3e-17
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 11/82 (13%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
                 +  + L+++       +        K      PLH A+  G   ++E L   G 
Sbjct: 115 VGKKWFEVSQFLIEN----GASVR------IKDKFNQIPLHRAASVGSLKLIELLCGLGK 164

Query: 116 -DINAVNDAGDTPLHKAAFVGR 136
             +N  +  G TPL  A   G 
Sbjct: 165 SAVNWQDKQGWTPLFHALAEGH 186

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 73.6 bits (182), Expect = 3e-17
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 10/78 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-G 114
              G L  I+ L          +N       +   GWTPL  A   GH      L+++ G
Sbjct: 148 ASVGSLKLIELLCGL---GKSAVN------WQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198

Query: 115 VDINAVNDAGDTPLHKAA 132
            + + V++ G      A 
Sbjct: 199 AEYDLVDNKGAKAEDVAL 216

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 64.8 bits (159), Expect = 8e-14
 Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 1/48 (2%)

Query: 90  LGWTPLHLASYFGHKS-VVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
           +   PLH A        V E L  +   +   +  G  PLH +     
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA 48

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 78.2 bits (194), Expect = 5e-20
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 10/80 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            +NG  +++K+LL        ++N      ++S  G TPLHLA+  GH  +V+ LL +G 
Sbjct: 17  AKNGHAEEVKKLLSK----GADVN------ARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66

Query: 116 DINAVNDAGDTPLHKAAFVG 135
           D+NA +  G+TP H A   G
Sbjct: 67  DVNARSKDGNTPEHLAKKNG 86

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 73.6 bits (182), Expect = 3e-18
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 10/74 (13%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            +NG  + +K LL        ++N      ++S  G TP HLA   GH  +V+ L  +G 
Sbjct: 50  AKNGHAEIVKLLLAK----GADVN------ARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99

Query: 116 DINAVNDAGDTPLH 129
           D+NA +       H
Sbjct: 100 DVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 72.8 bits (180), Expect = 7e-18
 Identities = 24/50 (48%), Positives = 30/50 (60%)

Query: 87  KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
            S  G TPLH A+  GH   V+ LL +G D+NA +  G+TPLH AA  G 
Sbjct: 5   GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGH 54

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 79.4 bits (197), Expect = 5e-20
 Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 11/81 (13%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R GQ D+++ L+ +                   LG +PLHLA+ +GH S  E LL  GV
Sbjct: 10  ARAGQDDEVRILMAN----GAPFT-------TDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
             +A      TPLH AA  G 
Sbjct: 59  SRDARTKVDRTPLHMAASEGH 79

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 76.7 bits (190), Expect = 6e-19
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 10/81 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            + G     + LL       V  +      +++ +  TPLH+A+  GH ++VE LL  G 
Sbjct: 42  AQYGHFSTTEVLLRA----GVSRD------ARTKVDRTPLHMAASEGHANIVEVLLKHGA 91

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
           D+NA +    T LH A     
Sbjct: 92  DVNAKDMLKMTALHWATEHNH 112

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 74.7 bits (185), Expect = 3e-18
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G  + ++ LL H      ++N      +K  L  T LH A+   H+ VVE L+  G 
Sbjct: 75  ASEGHANIVEVLLKH----GADVN------AKDMLKMTALHWATEHNHQEVVELLIKYGA 124

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           D++  +    T    +   G E
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNE 146

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 64.7 bits (159), Expect = 2e-14
 Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 1/46 (2%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
               L  A+  G    V  L+  G         G +PLH AA  G 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTDWL-GTSPLHLAAQYGH 46

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 44.3 bits (106), Expect = 1e-06
 Identities = 6/55 (10%), Positives = 22/55 (40%), Gaps = 10/55 (18%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFL 110
             +   + ++ L+ +      +++      ++S    T   ++   G++ + E L
Sbjct: 108 TEHNHQEVVELLIKY----GADVH------TQSKFCKTAFDISIDNGNEDLAEIL 152

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 80.4 bits (199), Expect = 8e-20
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
           C  G  D ++ L       N+E+N       ++ LG T LH A++ G+  +V+ LL +G 
Sbjct: 114 CHGGHKDIVEMLFTQP---NIELN------QQNKLGDTALHAAAWKGYADIVQLLLAKGA 164

Query: 116 DINAVNDAGDTPLHKAAFVG 135
             +  N         A    
Sbjct: 165 RTDLRNIEKKLAFDMATNAA 184

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 80.0 bits (198), Expect = 1e-19
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 11/82 (13%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-G 114
            + G L  +++ LD+     V +N           G T L+ A + GHK +VE L  Q  
Sbjct: 81  AKRGNLSWLRECLDN----RVGVN------GLDKAGSTALYWACHGGHKDIVEMLFTQPN 130

Query: 115 VDINAVNDAGDTPLHKAAFVGR 136
           +++N  N  GDT LH AA+ G 
Sbjct: 131 IELNQQNKLGDTALHAAAWKGY 152

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 75.7 bits (187), Expect = 5e-18
 Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 18/98 (18%)

Query: 56  CRNGQLDKIKQLLDH------------------CKENNVEINLSQKGESKSNLGWTPLHL 97
               +     +L                       +    +  S     ++     PLH 
Sbjct: 20  LYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHE 79

Query: 98  ASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
           A+  G+ S +   LD  V +N ++ AG T L+ A   G
Sbjct: 80  AAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG 117

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 68.4 bits (168), Expect = 3e-15
 Identities = 8/80 (10%), Positives = 19/80 (23%), Gaps = 10/80 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G  D ++ LL          +L      ++        +A+     S+++       
Sbjct: 148 AWKGYADIVQLLLAK----GARTDL------RNIEKKLAFDMATNAACASLLKKKQGTDA 197

Query: 116 DINAVNDAGDTPLHKAAFVG 135
                N         +    
Sbjct: 198 VRTLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 65.7 bits (161), Expect = 3e-14
 Identities = 12/46 (26%), Positives = 16/46 (34%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
           G   +  A Y       + L  +  DI  + D  DT   K    GR
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR 57

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 81.4 bits (202), Expect = 9e-20
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 11/83 (13%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
           C N Q   +K+LL+       ++N       +     +PLH       + +   L+D G 
Sbjct: 198 CENQQRACVKKLLES----GADVN-------QGKGQDSPLHAVVRTASEELACLLMDFGA 246

Query: 116 DINAVNDAGDTPLHKAAFVGREV 138
           D  A N  G  P+          
Sbjct: 247 DTQAKNAEGKRPVELVPPESPLA 269

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 78.3 bits (194), Expect = 1e-18
 Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
             +G    ++ L+         +N        +    +PLH A   GH S V+ LL  G 
Sbjct: 67  AIHGHQLSLRNLISQ----GWAVN------IITADHVSPLHEACLGGHLSCVKILLKHGA 116

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
            +N V     TPL  A   G 
Sbjct: 117 QVNGVTADWHTPLFNACVSGS 137

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 77.1 bits (191), Expect = 3e-18
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 11/80 (13%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
           C  G L  +K LL H      ++N        +    TPL  A   G    V  LL  G 
Sbjct: 100 CLGGHLSCVKILLKH----GAQVN------GVTADWHTPLFNACVSGSWDCVNLLLQHGA 149

Query: 116 DINAVNDAGDTPLHKAAFVG 135
            +   +D   +P+H+AA  G
Sbjct: 150 SVQPESD-LASPIHEAARRG 168

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 77.1 bits (191), Expect = 4e-18
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R G ++ +  L+ +       I+       K +   TPL+LA     ++ V+ LL+ G 
Sbjct: 165 ARRGHVECVNSLIAY----GGNID------HKISHLGTPLYLACENQQRACVKKLLESGA 214

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           D+N      D+PLH       E
Sbjct: 215 DVNQGKG-QDSPLHAVVRTASE 235

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 76.4 bits (189), Expect = 7e-18
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 11/81 (13%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
           C +G  D +  LL H       +          +   +P+H A+  GH   V  L+  G 
Sbjct: 133 CVSGSWDCVNLLLQH----GASVQ-------PESDLASPIHEAARRGHVECVNSLIAYGG 181

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
           +I+       TPL+ A    +
Sbjct: 182 NIDHKISHLGTPLYLACENQQ 202

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 75.6 bits (187), Expect = 1e-17
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 21/101 (20%)

Query: 56  CRNGQLDKIKQLLD---------------------HCKENNVEINLSQKGESKSNLGWTP 94
             +        L+                        ++      LS      +   W+P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSP 62

Query: 95  LHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
           +H A+  GH+  +  L+ QG  +N +     +PLH+A   G
Sbjct: 63  MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG 103

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 5/44 (11%)

Query: 97  LASYFGHKSVVEFLLDQGVDINAVNDA-----GDTPLHKAAFVG 135
           + S   H      L+ +G  + +++       G  P     F G
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPG 44

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 81.4 bits (202), Expect = 1e-19
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
             +     +  LL      +  ++       +++LG T LHLA+  G  S VE L   G 
Sbjct: 17  VIHQHEPFLDFLLGF-SAGHEYLD------LQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 116 DINAVNDAGDTPLHKAAFVG 135
            +      G T LH A  V 
Sbjct: 70  GVLVAERGGHTALHLACRVR 89

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 78.0 bits (193), Expect = 1e-18
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 9/81 (11%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
             +   + ++ L D       ++N     + +   G TPLHLA      SV+E LL  G 
Sbjct: 166 VIHKDAEMVRLLRDA----GADLN-----KPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
           D  A    G TPL  A     
Sbjct: 217 DPTARMYGGRTPLGSALLRPN 237

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 76.0 bits (188), Expect = 7e-18
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 11/111 (9%)

Query: 28  SEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESK 87
             + +   L+   +           + +  N + ++  +  D      +++       ++
Sbjct: 105 PRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDW----RLQLE------AE 154

Query: 88  SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAV-NDAGDTPLHKAAFVGRE 137
           +  G TPLH+A       +V  L D G D+N      G TPLH A      
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA 205

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 75.7 bits (187), Expect = 1e-17
 Identities = 10/77 (12%), Positives = 19/77 (24%), Gaps = 10/77 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
                   ++ LL        +        ++   G TPL  A    +  +   L   G 
Sbjct: 200 VEAQAASVLELLLKA----GADPT------ARMYGGRTPLGSALLRPNPILARLLRAHGA 249

Query: 116 DINAVNDAGDTPLHKAA 132
                     +P   + 
Sbjct: 250 PEPEDGGDKLSPCSSSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 66.0 bits (162), Expect = 4e-14
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVD---INAVNDAGDTPLHKAAFVGRE 137
           G T LHLA    H+  ++FLL        ++  ND G T LH AA +G  
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEA 58

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 64.5 bits (158), Expect = 2e-13
 Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 4/85 (4%)

Query: 56  CRNGQLDKIKQLLDH---CKENNVEINLSQKGESKSNLGWTPLHL-ASYFGHKSVVEFLL 111
           CR         LL        +  +  L+Q  +   +    P  + +             
Sbjct: 86  CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDE 145

Query: 112 DQGVDINAVNDAGDTPLHKAAFVGR 136
           D  + + A N  G TPLH A     
Sbjct: 146 DWRLQLEAENYDGHTPLHVAVIHKD 170

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 61.8 bits (151), Expect = 2e-12
 Identities = 10/77 (12%), Positives = 17/77 (22%), Gaps = 10/77 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G+   +++L          +            G T LHLA      +    LL    
Sbjct: 53  AILGEASTVEKLYAA----GAGVL------VAERGGHTALHLACRVRAHTCACVLLQPRP 102

Query: 116 DINAVNDAGDTPLHKAA 132
                         +  
Sbjct: 103 SHPRDASDTYLTQSQDC 119

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 42.9 bits (102), Expect = 7e-06
 Identities = 3/57 (5%), Positives = 8/57 (14%), Gaps = 10/57 (17%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD 112
                    + L  H                      +P   +         +   +
Sbjct: 233 LLRPNPILARLLRAH----GAPEP------EDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 80.6 bits (200), Expect = 1e-19
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 10/80 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R G L  + QL+ +      + +           G + +HLA+ FGH S+V +L+ +G 
Sbjct: 84  TRQGHLSMVVQLMKY----GADPS------LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ 133

Query: 116 DINAVNDAGDTPLHKAAFVG 135
           D++ ++  G TPL  AA+  
Sbjct: 134 DVDMMDQNGMTPLMWAAYRT 153

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 78.6 bits (195), Expect = 6e-19
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 9/80 (11%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
             N ++D +K  +         ++     +   +L  TPLH A+  GH S+V  L+  G 
Sbjct: 50  AINNRIDLVKYYISK----GAIVD-----QLGGDLNSTPLHWATRQGHLSMVVQLMKYGA 100

Query: 116 DINAVNDAGDTPLHKAAFVG 135
           D + ++  G + +H AA  G
Sbjct: 101 DPSLIDGEGCSCIHLAAQFG 120

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 77.9 bits (193), Expect = 9e-19
 Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 11/81 (13%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            + G  ++ ++L++       ++              T LH A+      +V++ + +G 
Sbjct: 17  TQYGIYERCRELVEA----GYDVR------QPDKENVTLLHWAAINNRIDLVKYYISKGA 66

Query: 116 DINAV-NDAGDTPLHKAAFVG 135
            ++ +  D   TPLH A   G
Sbjct: 67  IVDQLGGDLNSTPLHWATRQG 87

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 73.2 bits (181), Expect = 6e-17
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 9/81 (11%)

Query: 57  RNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVD 116
           R   +D  + LL      NV +NL  K         T LH A   G+ +V+  LL+ G +
Sbjct: 152 RTHSVDPTRLLLTF----NVSVNLGDKYH-----KNTALHWAVLAGNTTVISLLLEAGAN 202

Query: 117 INAVNDAGDTPLHKAAFVGRE 137
           ++A N  G++ L  A      
Sbjct: 203 VDAQNIKGESALDLAKQRKNV 223

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 72.9 bits (180), Expect = 7e-17
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 85  ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
               +     +  A+ +G       L++ G D+   +    T LH AA   R
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNR 54

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 70.9 bits (175), Expect = 5e-16
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 12/82 (14%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGH-KSVVEFLLDQG 114
            + G    +  L+        +++           G TPL  A+Y  H       LL   
Sbjct: 117 AQFGHTSIVAYLIAK----GQDVD------MMDQNGMTPLMWAAYRTHSVDPTRLLLTFN 166

Query: 115 VDINAVNDA-GDTPLHKAAFVG 135
           V +N  +    +T LH A   G
Sbjct: 167 VSVNLGDKYHKNTALHWAVLAG 188

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 55.1 bits (134), Expect = 3e-10
 Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 10/66 (15%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G    I  LL+        ++      +++  G + L LA    +  ++  L +   
Sbjct: 185 VLAGNTTVISLLLEA----GANVD------AQNIKGESALDLAKQRKNVWMINHLQEARQ 234

Query: 116 DINAVN 121
                N
Sbjct: 235 AKGYDN 240

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 80.5 bits (200), Expect = 1e-19
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            + G  + ++ LL + + +   +N       + + GWTP+  A+ + H  +V+ LL +G 
Sbjct: 85  AKKGHYEVVQYLLSNGQMD---VN------CQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135

Query: 116 DINAVNDAGDTPLHKAAFVG 135
           DIN  ++  +  LH AAF G
Sbjct: 136 DINIRDNEENICLHWAAFSG 155

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 79.8 bits (198), Expect = 2e-19
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 10/81 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
                +D +K LL        +IN       + N     LH A++ G   + E LL    
Sbjct: 119 TEYKHVDLVKLLLSK----GSDIN------IRDNEENICLHWAAFSGCVDIAEILLAAKC 168

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
           D++AVN  GD+PLH AA   R
Sbjct: 169 DLHAVNIHGDSPLHIAARENR 189

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 79.0 bits (196), Expect = 3e-19
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 10/81 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
             +G +D  + LL        +++      + +  G +PLH+A+       V   L +  
Sbjct: 152 AFSGCVDIAEILLAA----KCDLH------AVNIHGDSPLHIAARENRYDCVVLFLSRDS 201

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
           D+   N  G+TPL  A+   +
Sbjct: 202 DVTLKNKEGETPLQCASLNSQ 222

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 78.2 bits (194), Expect = 7e-19
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G +D    L+         I+      + S    TPL  A+   H   V++L+  G 
Sbjct: 19  AEAGHVDICHMLVQA----GANID------TCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68

Query: 116 DINAVNDAGDTPLHKAAFVG 135
            ++  +  G T LH AA  G
Sbjct: 69  LVDPKDAEGSTCLHLAAKKG 88

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 74.8 bits (185), Expect = 1e-17
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 75  NVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFV 134
           ++          +     +PLH A+  GH  +   L+  G +I+  ++   TPL +AA  
Sbjct: 1   HMNFK------MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN 54

Query: 135 G 135
            
Sbjct: 55  N 55

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 74.0 bits (183), Expect = 3e-17
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 11/82 (13%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG- 114
             N  L+ +K L+         ++       K   G T LHLA+  GH  VV++LL  G 
Sbjct: 52  AENNHLEAVKYLIKA----GALVD------PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101

Query: 115 VDINAVNDAGDTPLHKAAFVGR 136
           +D+N  +D G TP+  A     
Sbjct: 102 MDVNCQDDGGWTPMIWATEYKH 123

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 52.0 bits (126), Expect = 4e-09
 Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 10/61 (16%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R  + D +   L      + ++        K+  G TPL  AS          +     
Sbjct: 185 ARENRYDCVVLFLSR----DSDVT------LKNKEGETPLQCASLNSQVWSALQMSKALQ 234

Query: 116 D 116
           D
Sbjct: 235 D 235

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 78.2 bits (194), Expect = 2e-19
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 53  LYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD 112
                 G + ++++LL       V  +      + +  G T L +  + G  ++   LL 
Sbjct: 7   SGAAARGDVQEVRRLLH---RELVHPD------ALNRFGKTALQVMMF-GSTAIALELLK 56

Query: 113 QGVDINAVNDAGDTPLHKAAFVGR 136
           QG   N  + +G +P+H AA  G 
Sbjct: 57  QGASPNVQDTSGTSPVHDAARTGF 80

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 74.4 bits (184), Expect = 5e-18
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 11/82 (13%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R G LD +K L++H      ++N           G  P+HLA   GH +VV FL     
Sbjct: 76  ARTGFLDTLKVLVEH----GADVN------VPDGTGALPIHLAVQEGHTAVVSFLA-AES 124

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           D++  +  G TPL  A   G +
Sbjct: 125 DLHRRDARGLTPLELALQRGAQ 146

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 62.4 bits (153), Expect = 2e-13
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQ-GVDINAVNDAGDTPLHKAAF 133
               L  A+  G    V  LL +  V  +A+N  G T L    F
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF 45

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 80.0 bits (198), Expect = 2e-19
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 10/80 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G+ D +++++        + +        ++ G T LH A   GH  +V+FL+  GV
Sbjct: 45  SLEGEFDLVQRIIYE----VDDPS------LPNDEGITALHNAVCAGHTEIVKFLVQFGV 94

Query: 116 DINAVNDAGDTPLHKAAFVG 135
           ++NA +  G TPLH AA   
Sbjct: 95  NVNAADSDGWTPLHCAASCN 114

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 78.4 bits (194), Expect = 6e-19
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 11/80 (13%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R        + + H                 + L    L  +S  G   +V+ ++ +  
Sbjct: 13  KRTNLRKTGSERIAHGMRVKF-----------NPLPLALLLDSSLEGEFDLVQRIIYEVD 61

Query: 116 DINAVNDAGDTPLHKAAFVG 135
           D +  ND G T LH A   G
Sbjct: 62  DPSLPNDEGITALHNAVCAG 81

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 66.1 bits (162), Expect = 2e-14
 Identities = 6/46 (13%), Positives = 12/46 (26%), Gaps = 1/46 (2%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
           G   L        +      +  G+ +   N      L  ++  G 
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGE 49

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 65.3 bits (160), Expect = 6e-14
 Identities = 7/77 (9%), Positives = 15/77 (19%), Gaps = 7/77 (9%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
                +   K L++        +                       G+    +FL     
Sbjct: 111 ASCNNVQVCKFLVES----GAAVFAMTY---SDMQTAADKCEEMEEGYTQCSQFLYGVQE 163

Query: 116 DINAVNDAGDTPLHKAA 132
            +  +N      L    
Sbjct: 164 KMGIMNKGVIYALWDYE 180

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 81.8 bits (203), Expect = 2e-19
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R G  +  K LL +      ++N      +K+    TPLH A+  GH ++V+ LL+   
Sbjct: 55  ARAGHTEVAKYLLQN----KAKVN------AKAKDDQTPLHCAARIGHTNMVKLLLENNA 104

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           + N    AG TPLH AA  G  
Sbjct: 105 NPNLATTAGHTPLHIAAREGHV 126

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 81.8 bits (203), Expect = 2e-19
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            +  Q++  + LL +        N      ++S  G TPLHLA+  GH  +V  LL +  
Sbjct: 220 AKQNQVEVARSLLQY----GGSAN------AESVQGVTPLHLAAQEGHAEMVALLLSKQA 269

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           + N  N +G TPLH  A  G  
Sbjct: 270 NGNLGNKSGLTPLHLVAQEGHV 291

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 81.8 bits (203), Expect = 2e-19
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
             +  LD +K LL          +      S +  G+TPLH+A+      V   LL  G 
Sbjct: 187 VHHNNLDIVKLLLPR----GGSPH------SPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236

Query: 116 DINAVNDAGDTPLHKAAFVG 135
             NA +  G TPLH AA  G
Sbjct: 237 SANAESVQGVTPLHLAAQEG 256

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 81.8 bits (203), Expect = 2e-19
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 10/81 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            + G +     L+ H     V ++      + + +G+TPLH+AS++G+  +V+FLL    
Sbjct: 286 AQEGHVPVADVLIKH----GVMVD------ATTRMGYTPLHVASHYGNIKLVKFLLQHQA 335

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
           D+NA    G +PLH+AA  G 
Sbjct: 336 DVNAKTKLGYSPLHQAAQQGH 356

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 81.0 bits (201), Expect = 4e-19
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            + G  + +  LL          N        +  G TPLHL +  GH  V + L+  GV
Sbjct: 253 AQEGHAEMVALLLSK----QANGN------LGNKSGLTPLHLVAQEGHVPVADVLIKHGV 302

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
            ++A    G TPLH A+  G  
Sbjct: 303 MVDATTRMGYTPLHVASHYGNI 324

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 81.0 bits (201), Expect = 4e-19
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 23/103 (22%)

Query: 56  CRNGQLDKIKQLLDH------------------CKENNVEI--NLSQKG---ESKSNLGW 92
            R G ++ +  LL+                    K   V +   L ++     +    G 
Sbjct: 121 AREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGL 180

Query: 93  TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
           TPLH+A +  +  +V+ LL +G   ++    G TPLH AA   
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN 223

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 79.8 bits (198), Expect = 1e-18
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G +  +K LL H      ++N      +K+ LG++PLH A+  GH  +V  LL  G 
Sbjct: 319 SHYGNIKLVKFLLQH----QADVN------AKTKLGYSPLHQAAQQGHTDIVTLLLKNGA 368

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
             N V+  G TPL  A  +G  
Sbjct: 369 SPNEVSSDGTTPLAIAKRLGYI 390

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 79.8 bits (198), Expect = 1e-18
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 10/81 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R G  + +K LL++    N   N        +  G TPLH+A+  GH   V  LL++  
Sbjct: 88  ARIGHTNMVKLLLEN----NANPN------LATTAGHTPLHIAAREGHVETVLALLEKEA 137

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
               +   G TPLH AA  G+
Sbjct: 138 SQACMTKKGFTPLHVAAKYGK 158

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.9 bits (193), Expect = 5e-18
 Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G L  +K LL          N        +    TPLH+A+  GH  V ++LL    
Sbjct: 22  SFMGHLPIVKNLLQR----GASPN------VSNVKVETPLHMAARAGHTEVAKYLLQNKA 71

Query: 116 DINAVNDAGDTPLHKAAFVG 135
            +NA      TPLH AA +G
Sbjct: 72  KVNAKAKDDQTPLHCAARIG 91

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.9 bits (180), Expect = 3e-16
 Identities = 22/51 (43%), Positives = 28/51 (54%)

Query: 85  ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
                 G TPLH+AS+ GH  +V+ LL +G   N  N   +TPLH AA  G
Sbjct: 8   GGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAG 58

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 58.7 bits (143), Expect = 3e-11
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 13/79 (16%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFL---LD 112
            + G  D +  LL +        N        S+ G TPL +A   G+ SV + L    D
Sbjct: 352 AQQGHTDIVTLLLKN----GASPN------EVSSDGTTPLAIAKRLGYISVTDVLKVVTD 401

Query: 113 QGVDINAVNDAGDTPLHKA 131
           +   +   +    +     
Sbjct: 402 ETSFVLVSDKHRMSFPETV 420

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 81.1 bits (201), Expect = 3e-19
 Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 56  CRNGQLDKIKQLLDHCKENN-VEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG 114
                 + +  ++D     + + ++        +  G + LH A     + V    ++ G
Sbjct: 181 MEFRNREALDLMMDTVPSKSSLRLD------YANKQGNSHLHWAILINWEDVAMRFVEMG 234

Query: 115 VDINAVNDAGDTPLHKAAFVG 135
           +D+N  ++    PL+ +    
Sbjct: 235 IDVNMEDNEHTVPLYLSVRAA 255

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 78.8 bits (195), Expect = 2e-18
 Identities = 10/85 (11%), Positives = 25/85 (29%), Gaps = 3/85 (3%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGE---SKSNLGWTPLHLASYFGHKSVVEFLLD 112
            R   +   K+LL       ++      G        +    +  A+    + V++ L +
Sbjct: 252 VRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQE 311

Query: 113 QGVDINAVNDAGDTPLHKAAFVGRE 137
           +  ++    + G     K       
Sbjct: 312 KLDEVVRSLNTGAGGAVKRKKKAAP 336

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 75.3 bits (186), Expect = 4e-17
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 12/81 (14%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R GQ D++++L++      V          ++  G T LHLA  FG     ++L   G 
Sbjct: 28  ARKGQTDEVRRLIET----GVSPT------IQNRFGCTALHLACKFGCVDTAKYLASVGE 77

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
             +  +  G  P+H A    +
Sbjct: 78  VHSLWH--GQKPIHLAVMANK 96

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.1 bits (183), Expect = 9e-17
 Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 21/97 (21%)

Query: 56  CRNGQLDKIKQLLDHCKENN---------------VEINLSQKGESKSNLGWTPLHLASY 100
               + D +  L++  KE                  EI        K   G T LH    
Sbjct: 92  VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGS----HVKHCKGQTALHWCVG 147

Query: 101 FG--HKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
            G  +  +++ L+  G    A + A +TPL +A    
Sbjct: 148 LGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFR 184

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 71.8 bits (177), Expect = 5e-16
 Identities = 14/51 (27%), Positives = 20/51 (39%)

Query: 85  ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
               +     +H+A+  G    V  L++ GV     N  G T LH A   G
Sbjct: 14  IKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 69.5 bits (171), Expect = 4e-15
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 15/85 (17%)

Query: 58  NGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD----- 112
              L+ IK L+                 +K     TPL  A  F ++  ++ ++D     
Sbjct: 150 PEYLEMIKILVQL----GASPT------AKDKADETPLMRAMEFRNREALDLMMDTVPSK 199

Query: 113 QGVDINAVNDAGDTPLHKAAFVGRE 137
             + ++  N  G++ LH A  +  E
Sbjct: 200 SSLRLDYANKQGNSHLHWAILINWE 224

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 67.6 bits (166), Expect = 2e-14
 Identities = 6/76 (7%), Positives = 17/76 (22%), Gaps = 10/76 (13%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
               + + ++ L +       E+          N G             +V    L    
Sbjct: 298 ADPSKQEVLQLLQEK----LDEVV------RSLNTGAGGAVKRKKKAAPAVKRMKLAPSA 347

Query: 116 DINAVNDAGDTPLHKA 131
            +   + +       +
Sbjct: 348 PVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 64.1 bits (157), Expect = 3e-13
 Identities = 11/95 (11%), Positives = 27/95 (28%), Gaps = 23/95 (24%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-- 113
                 D   + ++      +++N       + N    PL+L+       + + LL +  
Sbjct: 219 ILINWEDVAMRFVEM----GIDVN------MEDNEHTVPLYLSVRAAMVLLTKELLQKTD 268

Query: 114 -----------GVDINAVNDAGDTPLHKAAFVGRE 137
                      G  +          +  AA   ++
Sbjct: 269 VFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQ 303

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 76.1 bits (188), Expect = 3e-19
 Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 13/82 (15%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
             +        L+               G    +     L  A+  G    V  L+  G 
Sbjct: 2   SSHHHHHHSSGLVPR-------------GSHMGSDLGKKLLEAARAGQDDEVRILMANGA 48

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           D+ A +  G TPLH AA  G  
Sbjct: 49  DVAAKDKNGSTPLHLAARNGHL 70

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 72.2 bits (178), Expect = 9e-18
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R GQ D+++ L+ +      ++       +K   G TPLHLA+  GH  VV+ LL+ G 
Sbjct: 32  ARAGQDDEVRILMAN----GADVA------AKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           D+ A +  G T    +   G E
Sbjct: 82  DVXAQDKFGKTAFDISIDNGNE 103

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 49.5 bits (119), Expect = 7e-09
 Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 3/40 (7%)

Query: 98  ASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
            S   H      L+ +G  + +        L +AA  G++
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQD 37

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 79.8 bits (198), Expect = 3e-19
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-G 114
              G++  +K L       N+     +  E     G T L  A+  GH  V++ LLD+ G
Sbjct: 113 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 172

Query: 115 VDINAVNDAGDTPLHKAAFVGRE 137
            D+NA ++ G   L  A     +
Sbjct: 173 ADVNACDNMGRNALIHALLSSDD 195

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 79.4 bits (197), Expect = 5e-19
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 9/80 (11%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            +N  +D ++QLL+        +N       +   GWTPLH A     + +VE LL  G 
Sbjct: 13  VQNEDVDLVQQLLEG----GANVN-----FQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 116 DINAVNDAGDTPLHKAAFVG 135
           D       G TP   AA  G
Sbjct: 64  DPVLRKKNGATPFLLAAIAG 83

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 78.3 bits (194), Expect = 2e-18
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            +  + D ++ LL H      +         +   G TP  LA+  G   +++  L +G 
Sbjct: 47  VQMSREDIVELLLRH----GADPV------LRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           D+N  +  G T   +AA  G+ 
Sbjct: 97  DVNECDFYGFTAFMEAAVYGKV 118

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 73.3 bits (181), Expect = 1e-16
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 13/84 (15%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGH----KSVVEFLL 111
              G ++ +K LLD       ++N      +  N+G   L  A         +++   LL
Sbjct: 156 AEKGHVEVLKILLDE---MGADVN------ACDNMGRNALIHALLSSDDSDVEAITHLLL 206

Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
           D G D+N   + G TPL  A    
Sbjct: 207 DHGADVNVRGERGKTPLILAVEKK 230

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 72.1 bits (178), Expect = 3e-16
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 11/86 (12%)

Query: 53  LYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD 112
           L +  +        LLDH      ++N       +   G TPL LA    H  +V+ LL+
Sbjct: 191 LSSDDSDVEAITHLLLDH----GADVN------VRGERGKTPLILAVEKKHLGLVQRLLE 240

Query: 113 Q-GVDINAVNDAGDTPLHKAAFVGRE 137
           Q  ++IN  +  G T L  A  +  +
Sbjct: 241 QEHIEINDTDSDGKTALLLAVELKLK 266

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 69.4 bits (171), Expect = 2e-15
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 20/90 (22%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G +  +K  L        ++N           G+T    A+ +G    ++FL  +G 
Sbjct: 80  AIAGSVKLLKLFLSK----GADVN------ECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129

Query: 116 DINA----------VNDAGDTPLHKAAFVG 135
           ++N           +   G T L  AA  G
Sbjct: 130 NVNLRRKTKEDQERLRKGGATALMDAAEKG 159

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 69.0 bits (170), Expect = 4e-15
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINAV-NDAGDTPLHKAAFVGRE 137
               L  A       +V+ LL+ G ++N    + G TPLH A  + RE
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE 52

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 63.6 bits (156), Expect = 3e-13
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
                L  +++LL+     ++EIN         + G T L LA     K + E L  +G 
Sbjct: 227 VEKKHLGLVQRLLEQE---HIEIN------DTDSDGKTALLLAVELKLKKIAELLCKRGA 277

Query: 116 DINAVN 121
             +  +
Sbjct: 278 STDCGD 283

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 77.9 bits (193), Expect = 3e-19
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G    ++ L +       +++           G T LH+A+ +    VVE L++ G 
Sbjct: 84  AGLGSDKCVRLLAEA----GADLD-----HRDMRGGLTALHMAAGYVRPEVVEALVELGA 134

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           DI   ++ G T L  A  + + 
Sbjct: 135 DIEVEDERGLTALELAREILKT 156

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 72.5 bits (179), Expect = 3e-17
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 12/83 (14%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R      + QLL+       +++      +    G T L   +  G    V  L + G 
Sbjct: 52  ARKADEQALSQLLEDR-----DVD------AVDENGRTALLFVAGLGSDKCVRLLAEAGA 100

Query: 116 DINAVND-AGDTPLHKAAFVGRE 137
           D++  +   G T LH AA   R 
Sbjct: 101 DLDHRDMRGGLTALHMAAGYVRP 123

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 70.6 bits (174), Expect = 2e-16
 Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 14/86 (16%)

Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
           +L   ++G                 ++          +   TP   A+    +  +  LL
Sbjct: 18  YLIEWKDGHSPSWVPSSYI----AADVV---------SEYETPWWTAARKADEQALSQLL 64

Query: 112 DQGVDINAVNDAGDTPLHKAAFVGRE 137
            +  D++AV++ G T L   A +G +
Sbjct: 65  -EDRDVDAVDENGRTALLFVAGLGSD 89

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 57.5 bits (140), Expect = 2e-11
 Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 3/51 (5%)

Query: 87  KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
            +  G     +    GH            D+ +     +TP   AA    E
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADE 57

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 53.3 bits (129), Expect = 9e-10
 Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 10/64 (15%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
               + + ++ L++       +I        +   G T L LA      +     +  G 
Sbjct: 118 AGYVRPEVVEALVEL----GADIE------VEDERGLTALELAREILKTTPKGNPMQFGR 167

Query: 116 DINA 119
            I  
Sbjct: 168 RIGL 171

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 76.7 bits (190), Expect = 4e-19
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 10/81 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R GQ D+++ L+ +      ++N      +K   G TPL+LA+  GH  +VE LL  G 
Sbjct: 22  ARAGQDDEVRILMAN----GADVN------AKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
           D+NAV+  G TPLH AAF+G 
Sbjct: 72  DVNAVDAIGFTPLHLAAFIGH 92

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 74.0 bits (183), Expect = 3e-18
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
             +G L+ ++ LL +      ++N      +   +G+TPLHLA++ GH  + E LL  G 
Sbjct: 55  TAHGHLEIVEVLLKN----GADVN------AVDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           D+NA +  G T    +   G E
Sbjct: 105 DVNAQDKFGKTAFDISIGNGNE 126

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 67.8 bits (167), Expect = 1e-15
 Identities = 15/46 (32%), Positives = 21/46 (45%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
               L  A+  G    V  L+  G D+NA ++ G TPL+ A   G 
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGH 59

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 43.1 bits (103), Expect = 2e-06
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
              G L+  + LL H      ++N      ++   G T   ++   G++ + E L 
Sbjct: 88  AFIGHLEIAEVLLKH----GADVN------AQDKFGKTAFDISIGNGNEDLAEILQ 133

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 77.8 bits (193), Expect = 4e-19
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
           C  G  + I +L+++      ++        K   G T L  A       + E LL +G 
Sbjct: 43  CMLGMENAIDKLVEN----FDKLE------DKDIEGSTALIWAVKNNRLGIAEKLLSKGS 92

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           ++N  + +G TPL  +   G  
Sbjct: 93  NVNTKDFSGKTPLMWSIIFGYS 114

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 77.0 bits (191), Expect = 1e-18
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            +N +L   ++LL         +N      +K   G TPL  +  FG+  +  FLL+ G 
Sbjct: 76  VKNNRLGIAEKLLSK----GSNVN------TKDFSGKTPLMWSIIFGYSEMSYFLLEHGA 125

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           ++N  N  G+TPL  A+  GR 
Sbjct: 126 NVNDRNLEGETPLIVASKYGRS 147

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 75.9 bits (188), Expect = 2e-18
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G  +    LL+H       +N       ++  G TPL +AS +G   +V+ LL+ G 
Sbjct: 109 IIFGYSEMSYFLLEH----GANVN------DRNLEGETPLIVASKYGRSEIVKKLLELGA 158

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           DI+A +  G T    A   GR+
Sbjct: 159 DISARDLTGLTAEASARIFGRQ 180

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 75.5 bits (187), Expect = 3e-18
 Identities = 14/65 (21%), Positives = 27/65 (41%)

Query: 73  ENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
           E ++  NL      + +   TPL +A   G ++ ++ L++    +   +  G T L  A 
Sbjct: 17  EKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAV 76

Query: 133 FVGRE 137
              R 
Sbjct: 77  KNNRL 81

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 48.5 bits (117), Expect = 5e-08
 Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 6/53 (11%)

Query: 84  GESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
           G      G     +         ++FL       N  +    TPL  A  +G 
Sbjct: 1   GSHMDKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGM 47

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 46.2 bits (111), Expect = 4e-07
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 10/57 (17%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD 112
            + G+ + +K+LL+       +I+      ++   G T    A  FG + V++   +
Sbjct: 142 SKYGRSEIVKKLLEL----GADIS------ARDLTGLTAEASARIFGRQEVIKIFTE 188

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 77.0 bits (191), Expect = 5e-19
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 53  LYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD 112
           L   + G  +  ++LL          +       K   G+  +H A+  G    ++ LL+
Sbjct: 42  LQVMKLGNPEIARRLLLR----GANPD------LKDRTGFAVIHDAARAGFLDTLQTLLE 91

Query: 113 QGVDINAVNDAGDTPLHKAAFVGR 136
              D+N  ++ G+ PLH AA  G 
Sbjct: 92  FQADVNIEDNEGNLPLHLAAKEGH 115

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 76.7 bits (190), Expect = 6e-19
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 11/81 (13%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G L+++  LL +    NV +N      +++  G T L +    G+  +   LL +G 
Sbjct: 13  AARGDLEQLTSLLQN----NVNVN------AQNGFGRTALQVMKL-GNPEIARRLLLRGA 61

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
           + +  +  G   +H AA  G 
Sbjct: 62  NPDLKDRTGFAVIHDAARAGF 82

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 73.6 bits (182), Expect = 9e-18
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 57  RNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG-V 115
           R G LD ++ LL+       ++N       + N G  PLHLA+  GH  VVEFL+     
Sbjct: 79  RAGFLDTLQTLLEF----QADVN------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           ++   N  GDT    A   GR 
Sbjct: 129 NVGHRNHKGDTACDLARLYGRN 150

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 69.7 bits (172), Expect = 3e-16
 Identities = 12/46 (26%), Positives = 17/46 (36%)

Query: 88  SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAF 133
           +      L  A+  G    +  LL   V++NA N  G T L     
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL 47

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 51.2 bits (124), Expect = 3e-09
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 9/59 (15%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG 114
            + G L  ++ L+ H   N   +        +++ G T   LA  +G   VV  +   G
Sbjct: 111 AKEGHLRVVEFLVKHTASN---VG------HRNHKGDTACDLARLYGRNEVVSLMQANG 160

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 78.4 bits (194), Expect = 6e-19
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
           C  G L  +  L   C   ++   L    ++ +  G T LHLAS  G+  +VE L+  G 
Sbjct: 86  CEQGCLASVGVLTQSCTTPHLHSIL----KATNYNGHTCLHLASIHGYLGIVELLVSLGA 141

Query: 116 DINAVNDA-GDTPLHKAAFVGR 136
           D+NA     G T LH A  +  
Sbjct: 142 DVNAQEPCNGRTALHLAVDLQN 163

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 76.4 bits (189), Expect = 4e-18
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 10/82 (12%)

Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
           +  +   ++ I+Q+          +N       ++NL  TPLHLA       + E LL  
Sbjct: 18  HEEKALTMEVIRQVKGD----LAFLN------FQNNLQQTPLHLAVITNQPEIAEALLGA 67

Query: 114 GVDINAVNDAGDTPLHKAAFVG 135
           G D    +  G+TPLH A   G
Sbjct: 68  GCDPELRDFRGNTPLHLACEQG 89

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 71.8 bits (177), Expect = 2e-16
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 9/80 (11%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
             +G L  ++ L+        ++N  +        G T LHLA    +  +V  LL  G 
Sbjct: 125 SIHGYLGIVELLVSL----GADVNAQEPCN-----GRTALHLAVDLQNPDLVSLLLKCGA 175

Query: 116 DINAVNDAGDTPLHKAAFVG 135
           D+N V   G +P        
Sbjct: 176 DVNRVTYQGYSPYQLTWGRP 195

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 68.0 bits (167), Expect = 6e-15
 Identities = 22/87 (25%), Positives = 29/87 (33%), Gaps = 16/87 (18%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
               Q +  + LL        +  L      +   G TPLHLA   G  + V  L     
Sbjct: 53  VITNQPEIAEALLGA----GCDPEL------RDFRGNTPLHLACEQGCLASVGVLTQSCT 102

Query: 116 D------INAVNDAGDTPLHKAAFVGR 136
                  + A N  G T LH A+  G 
Sbjct: 103 TPHLHSILKATNYNGHTCLHLASIHGY 129

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 64.5 bits (158), Expect = 1e-13
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 85  ESKSNLGWTPLHLASYFGHKS----VVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
           +  +  G + LHLA     K+    V+  +      +N  N+   TPLH A    
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITN 56

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 62.2 bits (152), Expect = 6e-13
 Identities = 8/77 (10%), Positives = 20/77 (25%), Gaps = 10/77 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
                 D +  LL        ++N        +  G++P  L        + + L    +
Sbjct: 159 VDLQNPDLVSLLLKC----GADVN------RVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 208

Query: 116 DINAVNDAGDTPLHKAA 132
           +   +    +       
Sbjct: 209 ENLQMLPESEDEESYDT 225

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 77.5 bits (192), Expect = 7e-19
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            +       + L D       +++           G TPL++A +     + + L+D+G 
Sbjct: 14  NQRDTKKVKEILQDT----TYQVD------EVDTEGNTPLNIAVHNNDIEIAKALIDRGA 63

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           DIN  N   D+P   A   GR 
Sbjct: 64  DINLQNSISDSPYLYAGAQGRT 85

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 75.2 bits (186), Expect = 6e-18
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 10/81 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG- 114
              G+ + +  +L H   +   +N        +  G   L  A+  GH   V+ LL+ G 
Sbjct: 80  GAQGRTEILAYMLKHATPD---LN------KHNRYGGNALIPAAEKGHIDNVKLLLEDGR 130

Query: 115 VDINAVNDAGDTPLHKAAFVG 135
            DI+  ND G T L +A  + 
Sbjct: 131 EDIDFQNDFGYTALIEAVGLR 151

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 73.3 bits (181), Expect = 3e-17
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 11/81 (13%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG- 114
             N  ++  K L+D       +IN       ++++  +P   A   G   ++ ++L    
Sbjct: 47  VHNNDIEIAKALIDR----GADIN------LQNSISDSPYLYAGAQGRTEILAYMLKHAT 96

Query: 115 VDINAVNDAGDTPLHKAAFVG 135
            D+N  N  G   L  AA  G
Sbjct: 97  PDLNKHNRYGGNALIPAAEKG 117

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 73.3 bits (181), Expect = 3e-17
 Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 14/87 (16%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYF-----GHKSVVEFL 110
              G +D +K LL+  +E+   I+       +++ G+T L  A         ++ +V+ L
Sbjct: 114 AEKGHIDNVKLLLEDGRED---ID------FQNDFGYTALIEAVGLREGNQLYQDIVKLL 164

Query: 111 LDQGVDINAVNDAGDTPLHKAAFVGRE 137
           ++ G D +  +++G T +  A   G  
Sbjct: 165 MENGADQSIKDNSGRTAMDYANQKGYT 191

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 70.9 bits (175), Expect = 2e-16
 Identities = 14/51 (27%), Positives = 21/51 (41%)

Query: 87  KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
           K+      L  A+    K V E L D    ++ V+  G+TPL+ A      
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDI 52

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 45.9 bits (110), Expect = 5e-07
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 10/60 (16%)

Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            L        D +K L+++      + ++      K N G T +  A+  G+  + + L 
Sbjct: 149 GLREGNQLYQDIVKLLMEN----GADQSI------KDNSGRTAMDYANQKGYTEISKILA 198

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 79.1 bits (196), Expect = 8e-19
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 10/80 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
           C +  +D +K L+++       IN         N GW PLH A+  G+  + E+L+ QG 
Sbjct: 81  CIDDNVDMVKFLVEN----GANIN------QPDNEGWIPLHAAASCGYLDIAEYLISQGA 130

Query: 116 DINAVNDAGDTPLHKAAFVG 135
            + AVN  GDTPL  A    
Sbjct: 131 HVGAVNSEGDTPLDIAEEEA 150

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 78.7 bits (195), Expect = 9e-19
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 10/84 (11%)

Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
           FL  C +G  +++ +LL+       +IN        +  G T LH A    +  +V+FL+
Sbjct: 44  FLAACSSGDTEEVLRLLER----GADIN------YANVDGLTALHQACIDDNVDMVKFLV 93

Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
           + G +IN  ++ G  PLH AA  G
Sbjct: 94  ENGANINQPDNEGWIPLHAAASCG 117

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 74.5 bits (184), Expect = 3e-17
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 10/77 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G  + +K L+        ++N       K   GWTPLH A+++G +     L++   
Sbjct: 207 AAKGYTEVLKLLIQA----RYDVN------IKDYDGWTPLHAAAHWGKEEACRILVENLC 256

Query: 116 DINAVNDAGDTPLHKAA 132
           D+ AVN  G T    A 
Sbjct: 257 DMEAVNKVGQTAFDVAD 273

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 73.7 bits (182), Expect = 7e-17
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 10/83 (12%)

Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
              R    D  + L       ++           +  G T LH+A+  G+  V++ L+  
Sbjct: 172 EEERIMLRDARQWLNSG----HINDV------RHAKSGGTALHVAAAKGYTEVLKLLIQA 221

Query: 114 GVDINAVNDAGDTPLHKAAFVGR 136
             D+N  +  G TPLH AA  G+
Sbjct: 222 RYDVNIKDYDGWTPLHAAAHWGK 244

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 59.1 bits (144), Expect = 2e-11
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 8/72 (11%)

Query: 68  LDHCKENN----VEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDA 123
           LD  +E      ++  ++++G                   +   ++L    ++      +
Sbjct: 143 LDIAEEEAMEELLQNEVNRQG----VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS 198

Query: 124 GDTPLHKAAFVG 135
           G T LH AA  G
Sbjct: 199 GGTALHVAAAKG 210

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 7/64 (10%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G+ +  + L+++      ++       + + +G T   +A       + E    Q +
Sbjct: 240 AHWGKEEACRILVEN----LCDME------AVNKVGQTAFDVADEDILGYLEELQKKQNL 289

Query: 116 DINA 119
             + 
Sbjct: 290 LHSE 293

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 79.1 bits (196), Expect = 1e-18
 Identities = 30/136 (22%), Positives = 46/136 (33%), Gaps = 29/136 (21%)

Query: 31  ETPNSLSAELNQLSVKEI---HELFLYNCRNGQLDKIKQLLDHCKENNVEIN-------- 79
           ++   ++                  L   R   L K+K+ L     N  +          
Sbjct: 158 KSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHC 217

Query: 80  ---------------LSQKG---ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVN 121
                          L +KG     K+    TPLH+A+   H  V+E L   G  +NA++
Sbjct: 218 AVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD 277

Query: 122 DAGDTPLHKAAFVGRE 137
             G T LH+AA  G  
Sbjct: 278 SLGQTALHRAALAGHL 293

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 78.7 bits (195), Expect = 2e-18
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 53  LYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD 112
           L   R+G  +K+  LL      NV  +      +      TPLHLA+ +    +V+ LL 
Sbjct: 29  LEAARSGNEEKLMALLT---PLNVNCH------ASDGRKSTPLHLAAGYNRVRIVQLLLQ 79

Query: 113 QGVDINAVNDAGDTPLHKAAFVG 135
            G D++A +  G  PLH A   G
Sbjct: 80  HGADVHAKDKGGLVPLHNACSYG 102

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 77.9 bits (193), Expect = 3e-18
 Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 10/80 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
           C  G  +  + LL H       +N      +     +TPLH A+      V   LL  G 
Sbjct: 99  CSYGHYEVTELLLKH----GACVN------AMDLWQFTPLHEAASKNRVEVCSLLLSHGA 148

Query: 116 DINAVNDAGDTPLHKAAFVG 135
           D   VN  G + +  A    
Sbjct: 149 DPTLVNCHGKSAVDMAPTPE 168

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 76.8 bits (190), Expect = 1e-17
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
               ++  ++ LL H      +++      +K   G  PLH A  +GH  V E LL  G 
Sbjct: 66  AGYNRVRIVQLLLQH----GADVH------AKDKGGLVPLHNACSYGHYEVTELLLKHGA 115

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
            +NA++    TPLH+AA   R 
Sbjct: 116 CVNAMDLWQFTPLHEAASKNRV 137

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 75.2 bits (186), Expect = 3e-17
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 10/77 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
                 D ++ L  H      ++N      +  +LG T LH A+  GH      LL  G 
Sbjct: 255 AERAHNDVMEVLHKH----GAKMN------ALDSLGQTALHRAALAGHLQTCRLLLSYGS 304

Query: 116 DINAVNDAGDTPLHKAA 132
           D + ++  G T      
Sbjct: 305 DPSIISLQGFTAAQMGN 321

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 61.0 bits (149), Expect = 4e-12
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 87  KSNLGWTPLHLASYFGH-KSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
                   L  A+  G+ + ++  L    V+ +A +    TPLH AA   R
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNR 70

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 11/101 (10%), Positives = 25/101 (24%), Gaps = 31/101 (30%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEF------ 109
               +++    LL H      +  L       +  G + + +A     +  + +      
Sbjct: 132 ASKNRVEVCSLLLSH----GADPTL------VNCHGKSAVDMAPTPELRERLTYEFKGHS 181

Query: 110 ---------------LLDQGVDINAVNDAGDTPLHKAAFVG 135
                           L   +       + +T LH A    
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASL 222

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 54.0 bits (131), Expect = 1e-09
 Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 17/80 (21%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G L   + LL +      + +        S  G+T   + +       V+ +L +  
Sbjct: 288 ALAGHLQTCRLLLSY----GSDPS------IISLQGFTAAQMGN-----EAVQQILSEST 332

Query: 116 DINAVNDAGDTPLHKAAFVG 135
            +   +   D  L +A+  G
Sbjct: 333 PMRTSDV--DYRLLEASKAG 350

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 77.9 bits (193), Expect = 1e-18
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
                    + L+ +   +   ++      ++ + G TPL LA+    + ++E L++   
Sbjct: 98  VSADAQGVFQILIRNRATD---LD------ARMHDGTTPLILAARLAVEGMLEDLINSHA 148

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
           D+NAV+D G + LH AA V  
Sbjct: 149 DVNAVDDLGKSALHWAAAVNN 169

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 75.6 bits (187), Expect = 9e-18
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 10/81 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R      ++ L++     + ++N      +  +LG + LH A+   +      LL  G 
Sbjct: 132 ARLAVEGMLEDLINS----HADVN------AVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
           + +  N+  +TPL  AA  G 
Sbjct: 182 NKDMQNNREETPLFLAAREGS 202

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 72.9 bits (180), Expect = 1e-16
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 10/77 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
                +D    LL +        +       ++N   TPL LA+  G     + LLD   
Sbjct: 165 AAVNNVDAAVVLLKN----GANKD------MQNNREETPLFLAAREGSYETAKVLLDHFA 214

Query: 116 DINAVNDAGDTPLHKAA 132
           + +  +     P   A 
Sbjct: 215 NRDITDHMDRLPRDIAQ 231

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 72.1 bits (178), Expect = 2e-16
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 11/83 (13%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG- 114
            R  + D  K+LL+     + + N       + N+G TPLH A     + V + L+    
Sbjct: 65  ARYSRSDAAKRLLEA----SADAN------IQDNMGRTPLHAAVSADAQGVFQILIRNRA 114

Query: 115 VDINAVNDAGDTPLHKAAFVGRE 137
            D++A    G TPL  AA +  E
Sbjct: 115 TDLDARMHDGTTPLILAARLAVE 137

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 71.3 bits (176), Expect = 3e-16
 Identities = 16/50 (32%), Positives = 22/50 (44%)

Query: 87  KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
               G T LHLA+ +      + LL+   D N  ++ G TPLH A     
Sbjct: 53  TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA 102

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 60.9 bits (149), Expect = 2e-12
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 20/75 (26%)

Query: 76  VEINLSQKGESKSNLGWTPLHLASYFG-------------HKSVVEFLLDQGVDI-NAVN 121
           +++N       +   G+TPL +AS  G               +V+   + QG  + N  +
Sbjct: 1   MDVN------VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTD 54

Query: 122 DAGDTPLHKAAFVGR 136
             G+T LH AA   R
Sbjct: 55  RTGETALHLAARYSR 69

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 55.2 bits (134), Expect = 3e-10
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 10/66 (15%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R G  +  K LLDH        +         ++   P  +A    H  +V  L  +  
Sbjct: 198 AREGSYETAKVLLDH----FANRD------ITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247

Query: 116 DINAVN 121
             +  +
Sbjct: 248 HHHHHH 253

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 77.3 bits (191), Expect = 2e-18
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 10/80 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G+L+ ++Q +        + +        +  G T LH A    + S+V+FL+  G 
Sbjct: 29  ALTGELEVVQQAVKE----MNDPS------QPNEEGITALHNAICGANYSIVDFLITAGA 78

Query: 116 DINAVNDAGDTPLHKAAFVG 135
           ++N+ +  G TPLH AA   
Sbjct: 79  NVNSPDSHGWTPLHCAASCN 98

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 67.3 bits (165), Expect = 1e-14
 Identities = 12/45 (26%), Positives = 18/45 (40%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
               L  A+  G   VV+  + +  D +  N+ G T LH A    
Sbjct: 21  PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGA 65

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 60.0 bits (146), Expect = 5e-12
 Identities = 10/79 (12%), Positives = 19/79 (24%), Gaps = 11/79 (13%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYF--GHKSVVEFLLDQ 113
                      L+ H       I       +  + G T       +  G+     +L D 
Sbjct: 95  ASCNDTVICMALVQH----GAAIF-----ATTLSDGATAFEKCDPYREGYADCATYLADV 145

Query: 114 GVDINAVNDAGDTPLHKAA 132
              +  +N      L   +
Sbjct: 146 EQSMGLMNSGAVYALWDYS 164

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 54.6 bits (132), Expect = 5e-10
 Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 11/83 (13%)

Query: 55  NCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG 114
             R G  D    L D        + L   G          L   S       + F   + 
Sbjct: 130 PYREGYADCATYLADV----EQSMGLMNSG------AVYALWDYSA-EFGDELSFREGES 178

Query: 115 VDINAVNDAGDTPLHKAAFVGRE 137
           V +   +   +T    AA  G+E
Sbjct: 179 VTVLRRDGPEETDWWWAALHGQE 201

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 76.7 bits (190), Expect = 2e-18
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
                    + L+ +   +   ++      ++ + G TPL LA+    + ++E L++   
Sbjct: 66  VSADAQGVFQILIRNRATD---LD------ARMHDGTTPLILAARLAVEGMLEDLINSHA 116

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
           D+NAV+D G + LH AA V  
Sbjct: 117 DVNAVDDLGKSALHWAAAVNN 137

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 75.5 bits (187), Expect = 5e-18
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 10/81 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R      ++ L++     + ++N      +  +LG + LH A+   +      LL  G 
Sbjct: 100 ARLAVEGMLEDLINS----HADVN------AVDDLGKSALHWAAAVNNVDAAVVLLKNGA 149

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
           + +  N+  +TPL  AA  G 
Sbjct: 150 NKDMQNNREETPLFLAAREGS 170

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 73.2 bits (181), Expect = 4e-17
 Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 10/81 (12%)

Query: 57  RNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVD 116
               +D    LL +        +       ++N   TPL LA+  G     + LLD   +
Sbjct: 134 AVNNVDAAVVLLKN----GANKD------MQNNREETPLFLAAREGSYETAKVLLDHFAN 183

Query: 117 INAVNDAGDTPLHKAAFVGRE 137
            +  +     P   A      
Sbjct: 184 RDITDHMDRLPRDIAQERMHH 204

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 72.8 bits (180), Expect = 7e-17
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 11/83 (13%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG- 114
            R  + D  K+LL+     + + N       + N+G TPLH A     + V + L+    
Sbjct: 33  ARYSRSDAAKRLLEA----SADAN------IQDNMGRTPLHAAVSADAQGVFQILIRNRA 82

Query: 115 VDINAVNDAGDTPLHKAAFVGRE 137
            D++A    G TPL  AA +  E
Sbjct: 83  TDLDARMHDGTTPLILAARLAVE 105

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 70.5 bits (174), Expect = 4e-16
 Identities = 16/50 (32%), Positives = 22/50 (44%)

Query: 87  KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
               G T LHLA+ +      + LL+   D N  ++ G TPLH A     
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA 70

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 52.8 bits (128), Expect = 1e-09
 Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 17/74 (22%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R G  +  K LLDH        +         ++   P  +A    H  +V  L +  +
Sbjct: 166 AREGSYETAKVLLDH----FANRD------ITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215

Query: 116 DINAVNDAGDTPLH 129
             +         LH
Sbjct: 216 VRS-------PQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 47.4 bits (114), Expect = 1e-07
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 102 GHKSVVEFLLDQGVDI-NAVNDAGDTPLHKAAFVGR 136
              +V+   + QG  + N  +  G+T LH AA   R
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR 37

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 74.8 bits (185), Expect = 2e-18
 Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 11/86 (12%)

Query: 53  LYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWT-PLHLASYFGHKSVVEFLL 111
           +     G     + LL H      E N             T P+H A+  G    +  L 
Sbjct: 49  IQVMMMGSAQVAELLLLH----GAEPN------CADPATLTRPVHDAAREGFLDTLVVLH 98

Query: 112 DQGVDINAVNDAGDTPLHKAAFVGRE 137
             G  ++  +  G  P+  A   G  
Sbjct: 99  RAGARLDVCDAWGRLPVDLAEEQGHR 124

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 72.9 bits (180), Expect = 1e-17
 Identities = 13/49 (26%), Positives = 17/49 (34%)

Query: 85  ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAF 133
                     L  A+  G    V  LL+ G D NA+N  G  P+     
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM 54

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 72.5 bits (179), Expect = 2e-17
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 12/81 (14%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              GQ++ ++QLL+       + N      + +  G  P+ +    G   V E LL  G 
Sbjct: 20  AARGQVETVRQLLEA----GADPN------ALNRFGRRPIQVMMM-GSAQVAELLLLHGA 68

Query: 116 DINAVNDAGDT-PLHKAAFVG 135
           + N  + A  T P+H AA  G
Sbjct: 69  EPNCADPATLTRPVHDAAREG 89

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 55.1 bits (134), Expect = 7e-11
 Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 10/61 (16%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R G LD +  L          ++           G  P+ LA   GH+ +  +L     
Sbjct: 86  AREGFLDTLVVLHRA----GARLD------VCDAWGRLPVDLAEEQGHRDIARYLHAATG 135

Query: 116 D 116
           D
Sbjct: 136 D 136

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 78.5 bits (194), Expect = 3e-18
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 10/84 (11%)

Query: 56  CRNGQLDKIKQLLDHCKENNVE----INLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
             N   +K + L+ H  +  +     +N      +      TPL LA     + +V +L+
Sbjct: 133 ASNSSAEKSEDLIVHEAKECIAAGADVN------AMDCDENTPLMLAVLARRRRLVAYLM 186

Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
             G D    N +  + LH+AA   
Sbjct: 187 KAGADPTIYNKSERSALHQAAANR 210

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 76.9 bits (190), Expect = 1e-17
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 76  VEINLSQKG---ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
           V+  + +KG   + +   G TP+ LA+  G   VV +L+ QG  + AV+    T    A 
Sbjct: 295 VKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQ 354

Query: 133 FVGRE 137
                
Sbjct: 355 ANNHH 359

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 72.3 bits (178), Expect = 4e-16
 Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 75  NVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-GVDINAVNDAGDTPLHKAAF 133
            V+ + + + +S+   G T LH A+   +  +V++L+ + G + +  ++ G TP+  AA 
Sbjct: 263 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ 322

Query: 134 VGR 136
            GR
Sbjct: 323 EGR 325

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 70.4 bits (173), Expect = 2e-15
 Identities = 11/83 (13%), Positives = 25/83 (30%), Gaps = 13/83 (15%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-- 113
               +   +  L+        +          +    + LH A+      ++ ++L+   
Sbjct: 174 VLARRRRLVAYLMKA----GADPT------IYNKSERSALHQAAANRDFGMMVYMLNSTK 223

Query: 114 -GVDINAVNDAGDTPLHKAAFVG 135
              DI  ++  G T L   A   
Sbjct: 224 LKGDIEELDRNGMTALMIVAHNE 246

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 66.1 bits (162), Expect = 6e-14
 Identities = 18/116 (15%), Positives = 30/116 (25%), Gaps = 16/116 (13%)

Query: 34  NSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDH---------CKENNVEIN--LSQ 82
           N      N  S+       L    +G + + +  L H             N  +      
Sbjct: 23  NEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHT 82

Query: 83  KG---ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
                          LH  +  G  ++ E +  + V+I        T LH  A   
Sbjct: 83  NLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPRH-NRTVLHWIASNS 136

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 66.1 bits (162), Expect = 6e-14
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 18/90 (20%)

Query: 57  RNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHK---SVVEFLLDQ 113
            N     +  +L+   +   +I            G T L + ++   +   +  + L+++
Sbjct: 208 ANRDFGMMVYMLNS-TKLKGDIE------ELDRNGMTALMIVAHNEGRDQVASAKLLVEK 260

Query: 114 GVDIN--------AVNDAGDTPLHKAAFVG 135
           G  ++        +    G T LH AA V 
Sbjct: 261 GAKVDYDGAARKDSEKYKGRTALHYAAQVS 290

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 19/92 (20%)

Query: 53  LYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL- 111
           L+    G     + +       +V I              T LH  +        E L+ 
Sbjct: 98  LHTEAAGSYAITEPITRE----SVNII-------DPRHNRTVLHWIASNSSAEKSEDLIV 146

Query: 112 -------DQGVDINAVNDAGDTPLHKAAFVGR 136
                    G D+NA++   +TPL  A    R
Sbjct: 147 HEAKECIAAGADVNAMDCDENTPLMLAVLARR 178

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 52.6 bits (127), Expect = 3e-09
 Identities = 7/62 (11%), Positives = 19/62 (30%), Gaps = 10/62 (16%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            + G+++ +  L+         +       +      T   LA    H ++V+       
Sbjct: 321 AQEGRIEVVMYLIQQ----GASVE------AVDATDHTARQLAQANNHHNIVDIFDRCRP 370

Query: 116 DI 117
           + 
Sbjct: 371 ER 372

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 76.5 bits (189), Expect = 4e-18
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G    ++ L +       +++           G T LH+A+ +    VVE L++ G 
Sbjct: 85  AGLGSDKCVRLLAEA----GADLD-----HRDMRGGLTALHMAAGYVRPEVVEALVELGA 135

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           DI   ++ G T L  A  + + 
Sbjct: 136 DIEVEDERGLTALELAREILKT 157

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 71.5 bits (176), Expect = 2e-16
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 12/83 (14%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R      + QLL+       +++      +    G T L   +  G    V  L + G 
Sbjct: 53  ARKADEQALSQLLED-----RDVD------AVDENGRTALLFVAGLGSDKCVRLLAEAGA 101

Query: 116 DINAVN-DAGDTPLHKAAFVGRE 137
           D++  +   G T LH AA   R 
Sbjct: 102 DLDHRDMRGGLTALHMAAGYVRP 124

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 68.0 bits (167), Expect = 5e-15
 Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 14/86 (16%)

Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
           +L   ++G                 ++          +   TP   A+    +  +  LL
Sbjct: 19  YLIEWKDGHSPSWVPSSYI----AADVV---------SEYETPWWTAARKADEQALSQLL 65

Query: 112 DQGVDINAVNDAGDTPLHKAAFVGRE 137
            +  D++AV++ G T L   A +G +
Sbjct: 66  -EDRDVDAVDENGRTALLFVAGLGSD 90

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 3/51 (5%)

Query: 87  KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
            +  G     +    GH            D+ +     +TP   AA    E
Sbjct: 11  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADE 58

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 10/103 (9%), Positives = 23/103 (22%), Gaps = 32/103 (31%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG- 114
               + + ++ L++       +I        +   G T L LA      +     +  G 
Sbjct: 119 AGYVRPEVVEALVEL----GADIE------VEDERGLTALELAREILKTTPKGNPMQFGR 168

Query: 115 ---------------------VDINAVNDAGDTPLHKAAFVGR 136
                                 +I      G    +   +   
Sbjct: 169 RIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDG 211

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 53.8 bits (130), Expect = 8e-10
 Identities = 17/108 (15%), Positives = 27/108 (25%), Gaps = 12/108 (11%)

Query: 31  ETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENN--VEINLSQKGESKS 88
            T   L+ E+ + + K       +  R G    I  L     E     EI        K 
Sbjct: 145 LTALELAREILKTTPKGN--PMQFGRRIGLEKVINVLEGQVFEYAEVDEIVE------KR 196

Query: 89  NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
             G    +L  +               +  A +   +  L  A     
Sbjct: 197 GKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYAVAESV 242

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 74.1 bits (182), Expect = 2e-17
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 10/80 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
                 +  +++L                        T LH A   GH  +VEFLL  GV
Sbjct: 15  YSGKLDELKERILAD----KSLAT------RTDQDSRTALHWACSAGHTEIVEFLLQLGV 64

Query: 116 DINAVNDAGDTPLHKAAFVG 135
            +N  +DAG +PLH AA  G
Sbjct: 65  PVNDKDDAGWSPLHIAASAG 84

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 64.1 bits (156), Expect = 1e-13
 Identities = 9/50 (18%), Positives = 13/50 (26%)

Query: 87  KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
                    +LA       + E +L         +    T LH A   G 
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGH 52

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 60.3 bits (146), Expect = 4e-12
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
           C  G  + ++ LL       V +N       K + GW+PLH+A+  G   +V+ LL +G 
Sbjct: 48  CSAGHTEIVEFLLQL----GVPVN------DKDDAGWSPLHIAASAGXDEIVKALLVKGA 97

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
            +NAVN  G TPLH AA   R 
Sbjct: 98  HVNAVNQNGCTPLHYAASKNRH 119

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 10/83 (12%)

Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
           Y     + +    LL+     +          +K +   T +H A+  G+  +V  LL  
Sbjct: 112 YAASKNRHEIAVMLLEGGANPD----------AKDHYDATAMHRAAAKGNLKMVHILLFY 161

Query: 114 GVDINAVNDAGDTPLHKAAFVGR 136
               N  +  G+TPLH A    R
Sbjct: 162 KASTNIQDTEGNTPLHLACDEER 184

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 10/81 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G  + +K LL      N          + +  G TPLH A+      +   LL+ G 
Sbjct: 81  ASAGXDEIVKALLVKGAHVN----------AVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130

Query: 116 DINAVNDAGDTPLHKAAFVGR 136
           + +A +    T +H+AA  G 
Sbjct: 131 NPDAKDHYDATAMHRAAAKGN 151

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 52.2 bits (125), Expect = 4e-09
 Identities = 22/79 (27%), Positives = 27/79 (34%), Gaps = 10/79 (12%)

Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
                G L  +  LL +    N           +   G TPLHLA         +FL+ Q
Sbjct: 145 RAAAKGNLKMVHILLFYKASTN----------IQDTEGNTPLHLACDEERVEEAKFLVTQ 194

Query: 114 GVDINAVNDAGDTPLHKAA 132
           G  I   N    TPL  A 
Sbjct: 195 GASIYIENKEEKTPLQVAK 213

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 12/65 (18%)

Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
             C   ++++ K L+                  ++    TPL +A   G   ++   L +
Sbjct: 178 LACDEERVEEAKFLVTQGASIY----------IENKEEKTPLQVAK--GGLGLILKRLAE 225

Query: 114 GVDIN 118
           G + +
Sbjct: 226 GEEAS 230

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 74.9 bits (185), Expect = 3e-17
 Identities = 11/82 (13%), Positives = 20/82 (24%), Gaps = 12/82 (14%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
                +  +   L                     +  + +H+    GH  ++  LLD   
Sbjct: 137 VMLNDVSIVSYFLSEIPSTF-----------DLAILLSCIHITIKNGHVDMMILLLDYMT 185

Query: 116 DINAVNDAGDTP-LHKAAFVGR 136
             N  N     P +  A     
Sbjct: 186 STNTNNSLLFIPDIKLAIDNKD 207

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 72.9 bits (180), Expect = 1e-16
 Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 11/81 (13%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
                   +K LL       ++ +         + G T L+ A   G+   V+  + +  
Sbjct: 70  ATLEDTKIVKILLFS----GLDDS------QFDDKGNTALYYAVDSGNMQTVKLFVKKNW 119

Query: 116 DINAVNDAG-DTPLHKAAFVG 135
            +      G  T  + A  + 
Sbjct: 120 RLMFYGKTGWKTSFYHAVMLN 140

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 72.2 bits (178), Expect = 3e-16
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 12/80 (15%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
             +  +  +  LL+         NL +           PLH A+      +V+ LL  G+
Sbjct: 39  IADNNVRLVCTLLNA----GALKNLLE--------NEFPLHQAATLEDTKIVKILLFSGL 86

Query: 116 DINAVNDAGDTPLHKAAFVG 135
           D +  +D G+T L+ A   G
Sbjct: 87  DDSQFDDKGNTALYYAVDSG 106

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 71.0 bits (175), Expect = 6e-16
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 13/81 (16%)

Query: 57  RNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVD 116
              +  ++K  L     ++ +             G +  + A    +  +V  LL+ G  
Sbjct: 8   NTWKSKQLKSFL-----SSKDTF------KADVHGHSASYYAIADNNVRLVCTLLNAGAL 56

Query: 117 INAVNDAGDTPLHKAAFVGRE 137
            N +    + PLH+AA +   
Sbjct: 57  KNLLE--NEFPLHQAATLEDT 75

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 68.7 bits (169), Expect = 5e-15
 Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 12/81 (14%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGW-TPLHLASYFGHKSVVEFLLDQG 114
             +G +  +K  +      N  +            GW T  + A      S+V + L + 
Sbjct: 103 VDSGNMQTVKLFVKK----NWRLM------FYGKTGWKTSFYHAVMLNDVSIVSYFLSEI 152

Query: 115 VDINAVNDAGDTPLHKAAFVG 135
                +     + +H     G
Sbjct: 153 PSTFDLAI-LLSCIHITIKNG 172

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 61.0 bits (149), Expect = 3e-12
 Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 18/82 (21%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTP-LHLASYFGHKSVVEFLLDQG 114
            +NG +D +  LLD+        N      + ++L + P + LA       +++ L    
Sbjct: 169 IKNGHVDMMILLLDY----MTSTN------TNNSLLFIPDIKLAIDNKDIEMLQALFKYD 218

Query: 115 VDINAVNDAGDTPLHKAAFVGR 136
           ++I        +   +   +  
Sbjct: 219 INIY-------SANLENVLLDD 233

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 58.3 bits (142), Expect = 3e-11
 Identities = 6/77 (7%), Positives = 24/77 (31%), Gaps = 17/77 (22%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
             N  ++ ++ L  +    ++ I              +            + + ++++ V
Sbjct: 203 IDNKDIEMLQALFKY----DINIY-------------SANLENVLLDDAEIAKMIIEKHV 245

Query: 116 DINAVNDAGDTPLHKAA 132
           +  + +   D  + K  
Sbjct: 246 EYKSDSYTKDLDIVKNN 262

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 6/45 (13%), Positives = 12/45 (26%), Gaps = 3/45 (6%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
           G     + ++   KS          D    +  G +  + A    
Sbjct: 1   GMDLSRINTW---KSKQLKSFLSSKDTFKADVHGHSASYYAIADN 42

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 72.1 bits (178), Expect = 3e-17
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 12/81 (14%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G++++++ LL+         N      + ++ G  P+ +    G   V E LL  G 
Sbjct: 20  AARGRVEEVRALLEA----GANPN------APNSYGRRPIQVMMM-GSARVAELLLLHGA 68

Query: 116 DINAVNDAGDT-PLHKAAFVG 135
           + N  + A  T P+H AA  G
Sbjct: 69  EPNCADPATLTRPVHDAAREG 89

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 71.0 bits (175), Expect = 8e-17
 Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 11/84 (13%)

Query: 53  LYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWT-PLHLASYFGHKSVVEFLL 111
           +     G     + LL H      E N             T P+H A+  G    +  L 
Sbjct: 49  IQVMMMGSARVAELLLLH----GAEPN------CADPATLTRPVHDAAREGFLDTLVVLH 98

Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
             G  ++  +  G  P+  A  +G
Sbjct: 99  RAGARLDVRDAWGRLPVDLAEELG 122

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 71.0 bits (175), Expect = 1e-16
 Identities = 12/47 (25%), Positives = 16/47 (34%)

Query: 87  KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAF 133
                   L  A+  G    V  LL+ G + NA N  G  P+     
Sbjct: 8   SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM 54

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 67.5 bits (166), Expect = 2e-15
 Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 15/80 (18%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R G LD +  L          ++       +   G  P+ LA   GH+ V  +L     
Sbjct: 86  AREGFLDTLVVLHRA----GARLD------VRDAWGRLPVDLAEELGHRDVARYLRAAAG 135

Query: 116 DINAVNDAGDTPLHKAAFVG 135
                           A  G
Sbjct: 136 GTRGS-----NHARIDAAEG 150

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 72.0 bits (177), Expect = 6e-17
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 7/82 (8%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G  +   +L +   E+            KSN+ +  L   +      +  FL+++G 
Sbjct: 14  AMLGTYEDFLELFEKGYEDKES-------VLKSNILYDVLRNNNDEARYKISMFLINKGA 66

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
           DI +    G T        G  
Sbjct: 67  DIKSRTKEGTTLFFPLFQGGGN 88

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 71.6 bits (176), Expect = 1e-16
 Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 16/88 (18%)

Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV------V 107
            N    +      L++       +I       S++  G T        G   +       
Sbjct: 48  NNNDEARYKISMFLINK----GADIK------SRTKEGTTLFFPLFQGGGNDITGTTELC 97

Query: 108 EFLLDQGVDINAVNDAGDTPLHKAAFVG 135
           +  L++G DI A+       + K  F  
Sbjct: 98  KIFLEKGADITALYKPYKIVVFKNIFNY 125

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 60.8 bits (148), Expect = 1e-12
 Identities = 11/98 (11%), Positives = 25/98 (25%), Gaps = 19/98 (19%)

Query: 49  HELFLYNCRN--GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKS- 105
             LF     +  G  +  K  L+       +I       +        +    +      
Sbjct: 80  FPLFQGGGNDITGTTELCKIFLEK----GADIT------ALYKPYKIVVFKNIFNYFVDE 129

Query: 106 -----VVEFLLDQ-GVDINAVNDAGDTPLHKAAFVGRE 137
                + + +  Q G+ +   +  G T L       + 
Sbjct: 130 NEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP 167

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 56.6 bits (137), Expect = 5e-11
 Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 9/70 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKG---ESKSNLGWTPLHLASYFGHKSVVEFLLD 112
             N  +D+ + +         ++  SQ G     K   G T L           ++ + D
Sbjct: 122 IFNYFVDENEMIP------LYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175

Query: 113 QGVDINAVND 122
                N   +
Sbjct: 176 YIKKYNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 5/42 (11%), Positives = 12/42 (28%), Gaps = 1/42 (2%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
            +  +  A+  G       L ++G +           L+   
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYEDKESVL-KSNILYDVL 46

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 73.0 bits (180), Expect = 7e-17
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 56  CRNGQLDKIKQLLDHC---KENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD 112
             N  ++ ++ LL                 +  +    G  PL  A+  G + +V  L++
Sbjct: 83  VINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE 142

Query: 113 QGVDINAVNDAGDTPLHKAAFVGRE 137
            G DI A +  G+T LH       +
Sbjct: 143 HGADIRAQDSLGNTVLHILILQPNK 167

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 65.7 bits (161), Expect = 4e-14
 Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 38/138 (27%)

Query: 31  ETPNSLSAELNQLSVKEIHELFLYN------------------CRNGQLDKIKQLLDHCK 72
           E+P  L+A+ N   V+ + +L  +                        L+    L++   
Sbjct: 4   ESPLLLAAKEN--DVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEA-- 59

Query: 73  ENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVND---------- 122
               E+       S+   G T LH+A    + ++V  LL +G  ++A             
Sbjct: 60  --APELVFEPM-TSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHN 116

Query: 123 ---AGDTPLHKAAFVGRE 137
               G+ PL  AA VG E
Sbjct: 117 LIYYGEHPLSFAACVGSE 134

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 59.2 bits (144), Expect = 8e-12
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 90  LGWTPLHLASYFGH-KSVVEFLLDQGVDINAVNDAGDTPLHKAAF 133
           +  +PL LA+     +++ + L  +G +++     G+T LH AA 
Sbjct: 2   IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAAL 46

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 20/90 (22%)

Query: 57  RNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVV----EFLLD 112
             G  + ++ L++H      +I       ++ +LG T LH+     +K+        LL 
Sbjct: 130 CVGSEEIVRLLIEH----GADIR------AQDSLGNTVLHILILQPNKTFACQMYNLLLS 179

Query: 113 QGVDINA------VNDAGDTPLHKAAFVGR 136
                +        N+ G TP   A   G 
Sbjct: 180 YDGGDHLKSLELVPNNQGLTPFKLAGVEGN 209

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 71.3 bits (175), Expect = 3e-16
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 15/100 (15%)

Query: 53  LYNCRNGQLDKIKQLLDH-CKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
           L N   G+ D I  LLD   K  N+   ++         G T LH+A     K  VE L+
Sbjct: 54  LLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLV 113

Query: 112 DQGVDINAVNDA--------------GDTPLHKAAFVGRE 137
           ++G D++A                  G+ PL  AA   + 
Sbjct: 114 EKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQP 153

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 66.0 bits (161), Expect = 3e-14
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 7/87 (8%)

Query: 56  CRNGQLDKIKQLLDH----CKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
                   ++ L++       +        +        G  PL LA+      +V +L 
Sbjct: 101 IERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160

Query: 112 DQG---VDINAVNDAGDTPLHKAAFVG 135
           + G    D+   +  G+T LH    + 
Sbjct: 161 ENGHKQADLRRQDSRGNTVLHALVAIA 187

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 52.9 bits (127), Expect = 2e-09
 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 23/97 (23%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKS---------V 106
               Q   +  L ++      ++        + + G T LH        +         +
Sbjct: 148 ACTNQPHIVHYLTEN-GHKQADLR------RQDSRGNTVLHALVAIADNTRENTKFVTKM 200

Query: 107 VEFLLDQGVDINA-------VNDAGDTPLHKAAFVGR 136
            + LL +   +         +N+ G +PL  AA  G+
Sbjct: 201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK 237

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 49.0 bits (117), Expect = 6e-08
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 67  LLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAG 124
           LL  C +   + NL       +N G +PL +A+  G   + + ++ + +   A +   
Sbjct: 204 LLIKCAKLFPDTNLE---ALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHH 258

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 20/97 (20%), Positives = 27/97 (27%), Gaps = 20/97 (20%)

Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLA---SYFGHKSVVEFL 110
               +G    +  LL H K       L+ +   + + G T L  A      G    +  L
Sbjct: 15  RGSPDGLEGLLSFLLTHKK------RLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPIL 68

Query: 111 LDQG-----------VDINAVNDAGDTPLHKAAFVGR 136
           LD                  V   G T LH A     
Sbjct: 69  LDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRC 105

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 43.2 bits (102), Expect = 5e-06
 Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 8/49 (16%)

Query: 93  TPLHLA----SYFGHKSVVEFLLDQGVDINAVN----DAGDTPLHKAAF 133
             L       S  G + ++ FLL     +          G T L KA  
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALL 55

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 70.6 bits (173), Expect = 8e-16
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 15/98 (15%)

Query: 55  NCRNGQLDKIKQLLDHCKENNVEINLSQKG-ESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
           N  NGQ D I  LLD  ++ +                G T LH+A    + ++V  L++ 
Sbjct: 64  NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN 123

Query: 114 GVDINAVND--------------AGDTPLHKAAFVGRE 137
           G D+ A  +               G+ PL  AA   + 
Sbjct: 124 GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 70.6 bits (173), Expect = 1e-15
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 56  CRNGQLDKIKQLLDH----CKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
                +  +  L+++        N +     KG      G  PL LA+     ++V+FLL
Sbjct: 109 IERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL 168

Query: 112 DQG---VDINAVNDAGDTPLHKAAFVG 135
                  DI+A +  G+T LH    V 
Sbjct: 169 QNSWQPADISARDSVGNTVLHALVEVA 195

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 58.6 bits (142), Expect = 2e-11
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 10/74 (13%)

Query: 62  DKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVN 121
               ++L    + +  + L    E  +  G TPL LA+  G   V+ ++L + +      
Sbjct: 207 SMYNEILILGAKLHPTLKLE---EITNRKGLTPLALAASSGKIGVLAYILQREIH----- 258

Query: 122 DAGDTPLHKAAFVG 135
                  H AA   
Sbjct: 259 --EPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 54.0 bits (130), Expect = 1e-09
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 23/96 (23%)

Query: 57  RNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVE-------- 108
              QL  +K LL +      +I+      ++ ++G T LH        +V          
Sbjct: 157 CTNQLAIVKFLLQN-SWQPADIS------ARDSVGNTVLHALVEVADNTVDNTKFVTSMY 209

Query: 109 --------FLLDQGVDINAVNDAGDTPLHKAAFVGR 136
                    L          N  G TPL  AA  G+
Sbjct: 210 NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 52.1 bits (125), Expect = 5e-09
 Identities = 20/120 (16%), Positives = 34/120 (28%), Gaps = 23/120 (19%)

Query: 35  SLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDH---CKENNVEINLSQKGESKSNLG 91
           S+SA      + +   +F          +++ LL      K+   +             G
Sbjct: 1   SVSAGEKPPRLYDRRSIF-DAVAQSNCQELESLLPFLQRSKKRLTDSE-----FKDPETG 54

Query: 92  WTPLHLAS---YFGHKSVVEFLLDQGVDINAV-----------NDAGDTPLHKAAFVGRE 137
            T L  A    + G    +  LLD     +++              G T LH A      
Sbjct: 55  KTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNM 114

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 69.8 bits (171), Expect = 1e-15
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 14/99 (14%)

Query: 53  LYNCRNGQLDKIKQLLDH-CKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
           + N ++G    I  LL       N +  ++ +   +   G + LH+A        V+ L+
Sbjct: 51  VLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLV 110

Query: 112 DQGVDINAVNDA-------------GDTPLHKAAFVGRE 137
           + G D++                  G+ PL  AA   + 
Sbjct: 111 ENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 67.5 bits (165), Expect = 9e-15
 Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 11/91 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKG----------ESKSNLGWTPLHLASYFGHKS 105
               Q D +  LL++       +  +              + ++   + L +  Y G   
Sbjct: 144 ACTKQWDVVTYLLEN-PHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ 202

Query: 106 VVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
           +   L          N  G TPL  AA  G+
Sbjct: 203 MGARLCPTVQLEEISNHQGLTPLKLAAKEGK 233

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 66.7 bits (163), Expect = 2e-14
 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 10/89 (11%)

Query: 56  CRNGQLDKIKQLLDH-----CKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFL 110
                L  +K L+++      +         Q        G  PL LA+      VV +L
Sbjct: 98  IEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFY--FGELPLSLAACTKQWDVVTYL 155

Query: 111 LDQGV---DINAVNDAGDTPLHKAAFVGR 136
           L+       + A +  G+T LH    +  
Sbjct: 156 LENPHQPASLEATDSLGNTVLHALVMIAD 184

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 10/70 (14%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
             +G L    +L    +   +           ++ G TPL LA+  G   +   +L +  
Sbjct: 196 MYDGLLQMGARLCPTVQLEEI----------SNHQGLTPLKLAAKEGKIEIFRHILQREF 245

Query: 116 DINAVNDAGD 125
              A +    
Sbjct: 246 SGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 53.3 bits (128), Expect = 2e-09
 Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 16/95 (16%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLA---SYFGHKSVVEFLLD 112
              G  +++  LL++ + N+  +  S    ++ + G T L  A      G  + +  LL 
Sbjct: 10  VSRGVPEELTGLLEYLRWNSKYLTDSAY--TEGSTGKTCLMKAVLNLQDGVNACIMPLLQ 67

Query: 113 QG-----------VDINAVNDAGDTPLHKAAFVGR 136
                                 G + LH A     
Sbjct: 68  IDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS 102

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 68.1 bits (166), Expect = 1e-14
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 49  HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVE 108
            E    +    + D I + LD        +N      ++ + G T L++A+  G+ S+V+
Sbjct: 247 KESKPNDKNGERKDSILENLDLKWIIANMLN------AQDSNGDTCLNIAARLGNISIVD 300

Query: 109 FLLDQGVDINAVNDAGDTPLHKAA 132
            LLD G D    N +G  P+   A
Sbjct: 301 ALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 68.1 bits (166), Expect = 1e-14
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 89  NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
             G TPLH  +   +  +V+ L+  G +    ++ G++ L KA    
Sbjct: 129 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV 175

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 53.1 bits (127), Expect = 2e-09
 Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 14/88 (15%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGH---KSVVEFLLD 112
                L+ +K L+ H                  N+G + L  A    +       E LLD
Sbjct: 139 TSIANLELVKHLVKH----GSNRL------YGDNMGESCLVKAVKSVNNYDSGTFEALLD 188

Query: 113 Q-GVDINAVNDAGDTPLHKAAFVGREVG 139
                +   +    T LH         G
Sbjct: 189 YLYPCLILEDSMNRTILHHIIITSGMTG 216

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 2/92 (2%)

Query: 48  IHELFLYNCRNGQLDKIKQLLDHCKENNVEINLS--QKGESKSNLGWTPLHLASYFGHKS 105
           +H + + +   G     K  LD      V+      Q G ++        +         
Sbjct: 205 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILE 264

Query: 106 VVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
            ++        +NA +  GDT L+ AA +G  
Sbjct: 265 NLDLKWIIANMLNAQDSNGDTCLNIAARLGNI 296

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 37.7 bits (87), Expect = 5e-04
 Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 9/136 (6%)

Query: 6   GRIKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIK 65
                    +RT   + T       +  +S    +  L    +++    N +  +L+   
Sbjct: 12  NENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVND----NEQKMKLEAFL 67

Query: 66  QLLDHCKENNVEINLSQKG---ESKSNLGWTPLHLASY-FGHKSVVEFLLDQGVDINAVN 121
           Q L   +   +  +L+       S+           S+    + V +   +  +++N   
Sbjct: 68  QRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPV 127

Query: 122 DA-GDTPLHKAAFVGR 136
           D  G+TPLH    +  
Sbjct: 128 DEHGNTPLHWLTSIAN 143

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 59.6 bits (144), Expect = 1e-11
 Identities = 12/80 (15%), Positives = 22/80 (27%), Gaps = 10/80 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
             NG L  + +L +      + +             +    LA+  GH  V+  L +   
Sbjct: 136 AENGHLHVLNRLCELAPTEIMAM--------IQAENYHAFRLAAENGHLHVLNRLCELAP 187

Query: 116 DINA--VNDAGDTPLHKAAF 133
                 +          AA 
Sbjct: 188 TEATAMIQAENYYAFRWAAV 207

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 58.4 bits (141), Expect = 3e-11
 Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 13/89 (14%)

Query: 49  HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVE 108
               +  C +  LD +  LL   +   V               +    LA+  GH  V+ 
Sbjct: 97  FVAAITGCSSA-LDTLCLLLTSDEIVKV----------IQAENYQAFRLAAENGHLHVLN 145

Query: 109 FLLDQGVDINAVNDA--GDTPLHKAAFVG 135
            L +                    AA  G
Sbjct: 146 RLCELAPTEIMAMIQAENYHAFRLAAENG 174

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 55.3 bits (133), Expect = 4e-10
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 7/111 (6%)

Query: 30  EETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLL--DHCKENNVEINLSQKGESK 87
           +   ++    L  LS KE   +FL   +N  +++++QLL   +   N     L      K
Sbjct: 31  QHFISANELSLMTLSYKEAIHIFLPGTKN--MEQVRQLLCLYYAHYNRNAKQLWSDAHKK 88

Query: 88  SNLGWTPLHLASYFGHKS---VVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
                    +A+  G  S    +  LL     +  +          AA  G
Sbjct: 89  GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG 139

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.1 bits (109), Expect = 7e-07
 Identities = 9/102 (8%), Positives = 26/102 (25%), Gaps = 18/102 (17%)

Query: 53  LYNCRNGQLDKIKQLLDHCKENNVE----INLSQKG------ESKSNLGWTPLHLASYFG 102
           ++    G+      +  H              +  G      +S+   G+  L       
Sbjct: 230 IHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN 289

Query: 103 HKSVVEFL--------LDQGVDINAVNDAGDTPLHKAAFVGR 136
            + +++ +        +        +    +  L  A  +G 
Sbjct: 290 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGN 331

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 7/77 (9%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
             NG L  + +L +          +  +        +     A   GH +V+ FLLD  V
Sbjct: 171 AENGHLHVLNRLCELAPTEAT-AMIQAEN------YYAFRWAAVGRGHHNVINFLLDCPV 223

Query: 116 DINAVNDAGDTPLHKAA 132
            +            K  
Sbjct: 224 MLAYAEIHEFEYGEKYV 240

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 8/52 (15%), Positives = 13/52 (25%), Gaps = 3/52 (5%)

Query: 85  ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
            +        L LA   G++     LL     +           +     GR
Sbjct: 313 ATIPGDANELLRLALRLGNQGACALLLSIPSVLAL---TKANNYYINETGGR 361

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 51.2 bits (122), Expect = 1e-08
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
           G T LH      +   ++ LL     I   N++G+TPL  A  + 
Sbjct: 205 GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLK 249

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 45.0 bits (106), Expect = 1e-06
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 7/84 (8%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKS---VVEFLLD 112
            +   +  + Q      +   +I L+   E       T LHLA     ++   +V+FL+ 
Sbjct: 138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEP----DETALHLAVRSVDRTSLHIVDFLVQ 193

Query: 113 QGVDINAVNDAGDTPLHKAAFVGR 136
              +++     G T LH       
Sbjct: 194 NSGNLDKQTGKGSTALHYCCLTDN 217

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 51.1 bits (122), Expect = 1e-08
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
           G T LH A+ +     ++ LL     +  VN+AG+T L  A
Sbjct: 226 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 47.7 bits (113), Expect = 2e-07
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 7/94 (7%)

Query: 46  KEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKS 105
               +       N  L  + +   +      +      G          LHLA    +++
Sbjct: 149 TPEPQRLWTAICNRDLLSVLEAFANG----QDFGQPLPGPDAQAPEELVLHLAVKVANQA 204

Query: 106 ---VVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
              +V+F++  G  ++A    G+T LH AA   +
Sbjct: 205 SLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQ 238

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 46.8 bits (111), Expect = 4e-07
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 74  NNVEINLSQKGESKSNLGWTPLHLASYFGHKS---VVEFLLDQGVDINAVNDAGDTPLHK 130
           N  +      G          LHLA    +++   +V+F++  G  ++A    G+T LH 
Sbjct: 154 NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 213

Query: 131 AAFVGR 136
           AA   +
Sbjct: 214 AALYNQ 219

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
           G T LH A+ +     ++ LL     +  VN+AG+T L  A
Sbjct: 207 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 43.2 bits (101), Expect = 7e-06
 Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 12/121 (9%)

Query: 12  PGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYN-CRNGQLDKIKQLLDH 70
           PG              +  +   +  A++N ++  + +   L        L   + LL  
Sbjct: 199 PGALLFRASGHPPSLPTMAD-ALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLL-- 255

Query: 71  CKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHK 130
             +N   +N         + G  PLH A+  GH  +    L +G D+ A +  G  PL  
Sbjct: 256 --QNGANVN------QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTI 307

Query: 131 A 131
           A
Sbjct: 308 A 308

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 17/46 (36%), Positives = 22/46 (47%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
             TPL  A+        EFLL  G ++N  + AG  PLH A  +G 
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGH 280

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.85
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.83
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.8
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.8
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.8
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.79
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.79
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.79
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.79
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.78
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.78
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.78
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.77
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.77
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.77
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.77
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.77
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.77
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.77
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.76
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.76
2rfa_A	232	Transient receptor potential cation channel subfa	99.76
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.76
2pnn_A	273	Transient receptor potential cation channel subfa	99.76
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.76
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.76
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.76
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.76
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.76
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.76
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.75
2etb_A	256	Transient receptor potential cation channel subfam	99.75
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.75
2etb_A	256	Transient receptor potential cation channel subfam	99.75
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.75
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.75
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.75
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.75
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.75
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.74
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.74
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.74
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.74
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.74
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.74
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.74
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.74
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.73
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.73
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.73
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.73
2rfa_A	232	Transient receptor potential cation channel subfa	99.73
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.73
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.73
2pnn_A	273	Transient receptor potential cation channel subfa	99.72
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.72
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.72
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.72
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.72
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.72
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.72
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.72
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.72
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.72
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.72
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.71
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.71
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.71
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.71
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.71
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.71
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.71
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.7
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.7
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.7
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.7
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.7
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.7
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.69
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.69
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.69
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.69
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.68
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.68
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.68
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.68
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.68
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.68
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.67
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.67
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.67
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.67
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.66
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.66
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.66
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.65
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.65
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.64
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.63
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.62
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.62
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.62
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.62
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.61
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.6
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.6
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.58
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.56
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.56
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.55
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.5
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.35
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.27

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.86  E-value=2.6e-22  Score=129.95  Aligned_cols=120  Identities=28%  Similarity=0.363  Sum_probs=96.5

Q ss_pred             CccccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCcc
Q psy15728          7 RIKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGES   86 (139)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~   86 (139)
                      ..++..|.++++.++..+.......+.. .+.+.+ ..+..+.||||+|+..|+.++++.|+..+++++          .
T Consensus        31 n~~d~~g~t~l~~a~~~~~~~~~~~ll~-~gad~~-~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn----------~   98 (169)
T 4gpm_A           31 NASDSDGRTPLHHAAENGHKEVVKLLIS-KGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISKGADVN----------A   98 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------C
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHh-cccchh-hhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCC----------C
Confidence            3456778888888887776654333321 222222 234567899999999999999999999885443          5


Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        87 ~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      +|..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus        99 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~  150 (169)
T 4gpm_A           99 KDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEE  150 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH
Confidence            7889999999999999999999999999999999999999999999999864

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.85  E-value=1.9e-21  Score=113.88  Aligned_cols=81  Identities=42%  Similarity=0.580  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcH
Q psy15728         48 IHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTP  127 (139)
Q Consensus        48 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tp  127 (139)
                      +.|+||+|+..|+.++++.|+..+++++          .+|..|+||||+|+..++.+++++|++.|++++.+|..|+||
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n----------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~   71 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVN----------AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP   71 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCc----------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCH
Confidence            5789999999999999999999885443          578899999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCcc
Q psy15728        128 LHKAAFVGREV  138 (139)
Q Consensus       128 l~~A~~~g~~~  138 (139)
                      ||+|+..|+.+
T Consensus        72 l~~A~~~~~~~   82 (93)
T 1n0q_A           72 LHLAARNGHLE   82 (93)
T ss_dssp             HHHHHHTTCHH
T ss_pred             HHHHHHcCCHH
Confidence            99999998764

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.83  E-value=3.2e-20  Score=111.94  Aligned_cols=89  Identities=30%  Similarity=0.414  Sum_probs=76.4

Q ss_pred             hhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc
Q psy15728         40 LNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINA  119 (139)
Q Consensus        40 ~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~  119 (139)
                      .....+.++.++||+|+..|+.++++.|+..+++++          .+|..|.||||+|+..++.+++++|++.|++++.
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~----------~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~   85 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVA----------AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA   85 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCC----------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            334455678999999999999999999999875433          5788899999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHhCCcc
Q psy15728        120 VNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus       120 ~~~~g~tpl~~A~~~g~~~  138 (139)
                      +|..|+||||+|+..|+.+
T Consensus        86 ~d~~g~tpl~~A~~~~~~~  104 (110)
T 2zgd_A           86 QDKFGKTAFDISIDNGNED  104 (110)
T ss_dssp             CCTTSCCHHHHHHHHTCHH
T ss_pred             cccCCCcHHHHHHHcCCHH
Confidence            9999999999999998864

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.80  E-value=9.8e-20  Score=117.83  Aligned_cols=111  Identities=31%  Similarity=0.429  Sum_probs=88.0

Q ss_pred             cchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHH
Q psy15728         16 RTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPL   95 (139)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l   95 (139)
                      .+..+++.+..+..+.+.. .+.+++. .+..+.|+||+|+..++.++++.|+..+++++          .+|..|+|||
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~-~Gadvn~-~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~----------~~d~~g~TpL   74 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIE-NGADVNA-SDSDGRTPLHHAAENGHKEVVKLLISKGADVN----------AKDSDGRTPL   74 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHH-TTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCHH
T ss_pred             HHHHHHHcCCHHHHHHHHH-CCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHhcccchh----------hhccCCCCHH
Confidence            3555666666555444332 2333333 34567889999999999999999998875443          5788999999


Q ss_pred             HHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         96 HLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        96 ~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      |+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus        75 h~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~  117 (169)
T 4gpm_A           75 HHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE  117 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            9999999999999999999999999999999999999999864

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.80  E-value=6.4e-21  Score=118.83  Aligned_cols=119  Identities=15%  Similarity=0.084  Sum_probs=97.7

Q ss_pred             CccccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCcc
Q psy15728          7 RIKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGES   86 (139)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~   86 (139)
                      ......+.++++.++..+..+..+.+... +.+.+. .+..+.++||+|+. |+.++++.|+..+++++          .
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~-~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~----------~   72 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNA-LNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN----------C   72 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTC-CCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS----------C
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCC-cCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC----------C
Confidence            44567888999999998876655544432 223322 34567899999999 99999999999885443          5


Q ss_pred             CCCC-CCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         87 KSNL-GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        87 ~d~~-g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      +|.. |.||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus        73 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~  125 (136)
T 1d9s_A           73 ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRD  125 (136)
T ss_dssp             CBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH
Confidence            7888 999999999999999999999999999999999999999999998764

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.80  E-value=3.2e-19  Score=109.23  Aligned_cols=79  Identities=34%  Similarity=0.554  Sum_probs=43.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHH
Q psy15728         49 HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL  128 (139)
Q Consensus        49 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl  128 (139)
                      .++||+|+..|+.+.++.|+..+.+.+          .+|..|+||||+|+..++.+++++|++.|++++.+|..|+|||
T Consensus         8 ~~~l~~A~~~~~~~~v~~ll~~~~~~~----------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL   77 (123)
T 3aaa_C            8 DKEFMWALKNGDLDEVKDYVAKGEDVN----------RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL   77 (123)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTT----------SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCcC----------ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHH
Confidence            455555555555555555555543221          3455555555555555555555555555555555555555555


Q ss_pred             HHHHHhCCc
Q psy15728        129 HKAAFVGRE  137 (139)
Q Consensus       129 ~~A~~~g~~  137 (139)
                      |+|+..|+.
T Consensus        78 ~~A~~~~~~   86 (123)
T 3aaa_C           78 LSAVYEGHV   86 (123)
T ss_dssp             HHHHHHTCH
T ss_pred             HHHHHcCCH
Confidence            555555543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.79  E-value=2e-20  Score=119.87  Aligned_cols=116  Identities=21%  Similarity=0.268  Sum_probs=80.1

Q ss_pred             CCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCC
Q psy15728         12 PGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLG   91 (139)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g   91 (139)
                      .+.+.++.+++.+..+..+.+........ ......+.++||+|+..|+.++++.|+..+.+++          .+|..|
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~~~g   75 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQSVNC-RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH----------AKDKGG   75 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTC-CCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTS
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCCCCc-cccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC----------ccCCCC
Confidence            34456666666666555554443322111 1223345688888888888888888887764332          467778


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         92 WTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        92 ~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      .||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus        76 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  122 (165)
T 3twr_A           76 LVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE  122 (165)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            88888888888888888888888888888888888888888877654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.79  E-value=2.3e-19  Score=121.58  Aligned_cols=115  Identities=25%  Similarity=0.316  Sum_probs=71.3

Q ss_pred             cCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCC
Q psy15728         11 APGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNL   90 (139)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~   90 (139)
                      ..|.++++.+++.+.....+.+.. .+...+.  ...+.++||+|+..|+.++++.|+..+++++          .+|..
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~-~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------~~d~~   69 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIA-HGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDDPS----------LPNDE   69 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCC----------CCCTT
T ss_pred             ccccccCchhhhhhhHHHHHHHhc-cCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcCCCCC----------CcCCC
Confidence            457778888888877776555543 2333332  2455899999999999999999998875443          56888


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        91 g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      |.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+..
T Consensus        70 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~  117 (239)
T 1ycs_B           70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ  117 (239)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999999999999999999999999999988754

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.79  E-value=8.4e-19  Score=109.16  Aligned_cols=117  Identities=25%  Similarity=0.372  Sum_probs=87.5

Q ss_pred             ccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCC
Q psy15728         10 FAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSN   89 (139)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~   89 (139)
                      ...+.+.++.++..+..+..+.+... +.+.+. .+..+.++||+|+..|+.++++.|+..+++.+          .+|.
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~d~   78 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMAN-GADVNA-KDEYGLTPLYLATAHGHLEIVEVLLKNGADVN----------AVDA   78 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCT
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHc-CCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------cCCC
Confidence            34455667777777776665544432 233322 33556788999998888888888888774333          5677


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         90 LGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        90 ~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      .|.||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus        79 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~  127 (136)
T 2jab_A           79 IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNED  127 (136)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHH
Confidence            8899999999999999999999999999989999999999999888754

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.79  E-value=1.4e-19  Score=118.51  Aligned_cols=117  Identities=23%  Similarity=0.270  Sum_probs=68.7

Q ss_pred             cccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCC
Q psy15728          9 KFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKS   88 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d   88 (139)
                      ++..|.+++|.++..+.....+.+... +.+.+ ..+..+.++||+|+..|+.++++.|+..+++.+          .+|
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~   98 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAIDKLVEN-FDKLE-DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN----------TKD   98 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT----------CCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHh-ccccc-cccccCccHHHHHHHcCCHHHHHHHHHCCCCCC----------CCC
Confidence            456677777777777765554443322 22222 123345677777777777777777777664332          345


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCc
Q psy15728         89 NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        89 ~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                      ..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.
T Consensus        99 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  147 (192)
T 2rfm_A           99 FSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS  147 (192)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            5566666666666666666666666666666666666666666655543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.78  E-value=7.7e-20  Score=115.88  Aligned_cols=118  Identities=23%  Similarity=0.229  Sum_probs=93.9

Q ss_pred             cccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCC
Q psy15728          9 KFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKS   88 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d   88 (139)
                      .+..|.+++|.++..+..+..+.+.. .+.+.+ ..+..+.|+||+|+..|+.++++.|+..+++++          .+|
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~   97 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLLR-AGVSRD-ARTKVDRTPLHMAASEGHANIVEVLLKHGADVN----------AKD   97 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT----------CCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCC-CCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCC----------CCC
Confidence            35668888999988877554443332 122222 234457899999999999999999998875443          578


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         89 NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        89 ~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      ..|.||||+|+..++.+++++|++.|++++.++..|+||||+|+..|+.+
T Consensus        98 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  147 (153)
T 1awc_B           98 MLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNED  147 (153)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH
Confidence            88999999999999999999999999999999999999999999998864

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.78  E-value=7.9e-20  Score=118.62  Aligned_cols=114  Identities=28%  Similarity=0.382  Sum_probs=75.5

Q ss_pred             CCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCC
Q psy15728         13 GGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGW   92 (139)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~   92 (139)
                      +.+.++.++..+.......+........ ...+..+.++||+|+..|+.++++.|+..+++++          .+|..|.
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~~~g~   73 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDL-NQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN----------VMNRGDD   73 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccc-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC----------CcCCCCC
Confidence            4455666666665554444333222222 2234456678888888888888888877764333          4567778


Q ss_pred             cHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCc
Q psy15728         93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        93 t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                      ||||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.
T Consensus        74 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~  118 (179)
T 3f6q_A           74 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD  118 (179)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            888888888888888888888888888888888888888877764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.78  E-value=1.3e-19  Score=116.69  Aligned_cols=118  Identities=23%  Similarity=0.146  Sum_probs=84.0

Q ss_pred             cccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCC
Q psy15728          9 KFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKS   88 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d   88 (139)
                      .+..|.+++|.++..+..+..+.+.. .+.+.+. .+..+.++||+|+..|+.++++.|+..+.+.+          .+|
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~   99 (172)
T 3v30_A           32 PDERGFTPLIWASAFGEIETVRFLLE-WGADPHI-LAKERESALSLASTGGYTDIVGLLLERDVDIN----------IYD   99 (172)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT----------CCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCchh-hcccCCCHHHHHHHCCCHHHHHHHHHcCCCCC----------CCC
Confidence            35567777777777766554443332 2222222 23456778888888888888888887764332          567


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         89 NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        89 ~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      ..|.||||+|+..++.+++++|++.|++++.++..|+||||+|+..|+.+
T Consensus       100 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  149 (172)
T 3v30_A          100 WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRK  149 (172)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHH
Confidence            77888888888888888888888888888888888888888888887754

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.77  E-value=4.2e-20  Score=120.50  Aligned_cols=113  Identities=18%  Similarity=0.205  Sum_probs=74.8

Q ss_pred             CCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCC-CC
Q psy15728         12 PGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKS-NL   90 (139)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d-~~   90 (139)
                      .+.+++|.++..+.....+.+..  +.+.+. .+..+.|+||+|+..|+.++++.|+..+++++          .+| ..
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~~  109 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE--DRDVDA-VDENGRTALLFVAGLGSDKCVRLLAEAGADLD----------HRDMRG  109 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT--TSCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCSSS
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh--cCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------cCCCCC
Confidence            44556666666665554444443  222222 33456777777777777777777777764433          344 66


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCc
Q psy15728         91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        91 g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                      |+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..++.
T Consensus       110 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~  156 (183)
T 3deo_A          110 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT  156 (183)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT
T ss_pred             CCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC
Confidence            77888888888888888888877888777777788888877776543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.77  E-value=4.1e-19  Score=110.59  Aligned_cols=117  Identities=24%  Similarity=0.210  Sum_probs=85.9

Q ss_pred             ccccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccC
Q psy15728          8 IKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESK   87 (139)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~   87 (139)
                      .++..|.+.+|.++..+.....+.+.. .+.+.+ ..+..+.++||+|+..|+.++++.|+..+++.+          .+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~----------~~   72 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQ-NGSDPN-VKDHAGWTPLHEACNHGHLKVVELLLQHKALVN----------TT   72 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc----------Cc
Confidence            456778888888888776555444332 122222 234466788888888888888888888774333          46


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCC
Q psy15728         88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR  136 (139)
Q Consensus        88 d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~  136 (139)
                      |..|.||||+|+..++.+++++|++.|++++.+|..|.|||++|+..+.
T Consensus        73 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~  121 (137)
T 3c5r_A           73 GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESM  121 (137)
T ss_dssp             CGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccH
Confidence            7778888888888888888888888888888888888888888876543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.77  E-value=1.5e-19  Score=115.98  Aligned_cols=118  Identities=23%  Similarity=0.173  Sum_probs=82.8

Q ss_pred             cccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCC
Q psy15728          9 KFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKS   88 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d   88 (139)
                      .+..|.+++|.++..+.....+.+... +.+.+. ....+.++||+|+..|+.++++.|+..+++.+          .+|
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~   99 (167)
T 3v31_A           32 TDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQL-LGKGRESALSLACSKGYTDIVKMLLDCGVDVN----------EYD   99 (167)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT----------CCC
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCC-cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC----------cCC
Confidence            355677777777777665443333222 222222 23455678888888888888888887764332          467


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         89 NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        89 ~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      ..|.||||+|+..++.+++++|++.|++++.++..|+||||+|+..|+.+
T Consensus       100 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  149 (167)
T 3v31_A          100 WNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRS  149 (167)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            77888888888888888888888888888888888888888888887753

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.77  E-value=9.5e-19  Score=108.92  Aligned_cols=85  Identities=40%  Similarity=0.606  Sum_probs=76.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCC
Q psy15728         44 SVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDA  123 (139)
Q Consensus        44 ~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~  123 (139)
                      ....+.++||+|+..|+.++++.|+..+.+.+          .+|..|.||||+|+..++.+++++|++.|++++.+|..
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~----------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~   79 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVN----------AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI   79 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCC----------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC
Confidence            34567899999999999999999999885433          57888999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHhCCcc
Q psy15728        124 GDTPLHKAAFVGREV  138 (139)
Q Consensus       124 g~tpl~~A~~~g~~~  138 (139)
                      |.||||+|+..|+.+
T Consensus        80 g~t~L~~A~~~~~~~   94 (136)
T 2jab_A           80 GFTPLHLAAFIGHLE   94 (136)
T ss_dssp             CCCHHHHHHHHTCHH
T ss_pred             CCCHHHHHHHcCCHH
Confidence            999999999998754

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.77  E-value=2.8e-19  Score=123.40  Aligned_cols=52  Identities=40%  Similarity=0.537  Sum_probs=29.3

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCc
Q psy15728         86 SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        86 ~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                      .+|..|.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.
T Consensus       147 ~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~  198 (269)
T 4b93_B          147 KKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHV  198 (269)
T ss_dssp             CCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCH
Confidence            3455555555555555555555555555555555555555555555555543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.77  E-value=2.5e-20  Score=118.66  Aligned_cols=118  Identities=17%  Similarity=0.133  Sum_probs=93.8

Q ss_pred             ccccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccC
Q psy15728          8 IKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESK   87 (139)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~   87 (139)
                      ..+..+.+.+|.++..+.....+.+... +.+.+. .+..+.++||+|+ .|+.++++.|+..+++++          .+
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~-~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~----------~~   73 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEA-GANPNA-PNSYGRRPIQVMM-MGSARVAELLLLHGAEPN----------CA   73 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTC-CCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC----------CC
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCC-CCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCC----------Cc
Confidence            4467788899999988887665554432 333333 2346788999985 899999999998875443          57


Q ss_pred             CCCCCc-HHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         88 SNLGWT-PLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        88 d~~g~t-~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      |..|.| |||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus        74 d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~  125 (156)
T 1bi7_B           74 DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRD  125 (156)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHH
T ss_pred             CCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHH
Confidence            888998 999999999999999999999999999999999999999998764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.77  E-value=2.3e-19  Score=115.60  Aligned_cols=114  Identities=20%  Similarity=0.190  Sum_probs=92.9

Q ss_pred             CCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCc
Q psy15728         14 GNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWT   93 (139)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t   93 (139)
                      .++++.++..+.......+..... ......+..+.++||+|+..|+.++++.|+..+++++          .+|..|.|
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~~~g~t   71 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGD-NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH----------ILAKERES   71 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCS-GGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT----------CCCTTCCC
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCc-ccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch----------hhcccCCC
Confidence            346777777777666555544332 2223345677899999999999999999999885443          57888999


Q ss_pred             HHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         94 PLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        94 ~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      |||+|+..++.+++++|++.|++++.++..|+||||+|+..|+.+
T Consensus        72 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  116 (172)
T 3v30_A           72 ALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVK  116 (172)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999999999999999999999999998764

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.76  E-value=2.3e-19  Score=115.02  Aligned_cols=115  Identities=20%  Similarity=0.202  Sum_probs=94.4

Q ss_pred             CCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCC
Q psy15728         12 PGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLG   91 (139)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g   91 (139)
                      .+.+++|.++..+.......+... +... ...+..+.++||+|+..|+.++++.|+..+++++          ..|..|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~~~g   69 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ----------LLGKGR   69 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH-SSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc-CCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC----------CcCCCC
Confidence            356788888888877665554432 2222 2234567899999999999999999999885443          568889


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         92 WTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        92 ~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      .||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.+
T Consensus        70 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  116 (167)
T 3v31_A           70 ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVK  116 (167)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHH
Confidence            99999999999999999999999999999999999999999998754

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.76  E-value=4.7e-20  Score=117.02  Aligned_cols=117  Identities=26%  Similarity=0.243  Sum_probs=84.0

Q ss_pred             ccccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccC
Q psy15728          8 IKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESK   87 (139)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~   87 (139)
                      ..+..|.+++|. +..+.....+.+.. .+.+.+. .+..+.++||+|+..|+.++++.|+..+++++          .+
T Consensus        31 ~~~~~g~t~L~~-~~~~~~~~v~~Ll~-~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~   97 (156)
T 1bd8_A           31 ALNRFGKTALQV-MMFGSTAIALELLK-QGASPNV-QDTSGTSPVHDAARTGFLDTLKVLVEHGADVN----------VP   97 (156)
T ss_dssp             CCCTTSCCHHHH-SCTTCHHHHHHHHH-TTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC----------CC
T ss_pred             ccCCCCCcHHHH-HHcCCHHHHHHHHH-CCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC----------Cc
Confidence            345567777777 65555443333222 1222222 33466788999999999999888888774433          46


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        88 d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      |..|.||||+|+..++.+++++|++. ++++.+|..|.||||+|+..|+.+
T Consensus        98 ~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~  147 (156)
T 1bd8_A           98 DGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQD  147 (156)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHH
T ss_pred             CCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHH
Confidence            77888999999999999999988888 888888888999999998888754

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.76  E-value=4.5e-19  Score=119.04  Aligned_cols=131  Identities=18%  Similarity=0.222  Sum_probs=98.7

Q ss_pred             CccccCCCCcchhhhhhccCCCccCCCchhhHHhh----hcCHHHHHHHHHHHHHcCCHHHHHHHHHhccccccccc---
Q psy15728          7 RIKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELN----QLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEIN---   79 (139)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~---   79 (139)
                      ..++..|.+++|.++..+..+..+.+... +....    ...+..+.++||+|+..|+.++++.|+..+++.+....   
T Consensus        31 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  109 (232)
T 2rfa_A           31 HQRGAMGETALHIAALYDNLEAAMVLMEA-APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSV  109 (232)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGG
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcc
Confidence            34467788999999988876554443332 22221    22345678999999999999999999999876553100   


Q ss_pred             ccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         80 LSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        80 ~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      .....+..|..|.||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus       110 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~  168 (232)
T 2rfa_A          110 FHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKT  168 (232)
T ss_dssp             GSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHH
T ss_pred             eeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChH
Confidence            00111234568999999999999999999999999999999999999999999988753

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.76  E-value=9.5e-19  Score=121.30  Aligned_cols=84  Identities=20%  Similarity=0.288  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHc---CCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCC
Q psy15728         45 VKEIHELFLYNCRN---GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVN  121 (139)
Q Consensus        45 ~~~~~~~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  121 (139)
                      ...+.|+||+|+..   |+.++++.|+..+++++          .+|..|+||||+|+..|+.+++++|++.|++++.+|
T Consensus       166 ~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in----------~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d  235 (278)
T 1dcq_A          166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD----------KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIAN  235 (278)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT----------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             ccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc----------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcc
Confidence            34578999999999   89999999999986544          578899999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHhCCcc
Q psy15728        122 DAGDTPLHKAAFVGREV  138 (139)
Q Consensus       122 ~~g~tpl~~A~~~g~~~  138 (139)
                      ..|+||||+|+..|+.+
T Consensus       236 ~~g~tpL~~A~~~~~~~  252 (278)
T 1dcq_A          236 ESGETPLDIAKRLKHEH  252 (278)
T ss_dssp             TTSCCHHHHHHHTTCHH
T ss_pred             CCCCCHHHHHHHcCCHH
Confidence            99999999999999864

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.76  E-value=3.8e-19  Score=122.28  Aligned_cols=135  Identities=21%  Similarity=0.178  Sum_probs=100.6

Q ss_pred             ccCCccccCCCCcchhhhhhccCCCccCCCchhhHHhh------hcCHHHHHHHHHHHHHc---CCHHHHHHHHHhcccc
Q psy15728          4 KHGRIKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELN------QLSVKEIHELFLYNCRN---GQLDKIKQLLDHCKEN   74 (139)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~a~~~---g~~~~~~~ll~~~~~~   74 (139)
                      ...+..+..+.+.++.+++.+.....+.+.........      ...+..+.|+||+|+..   |+.++++.|+..+++.
T Consensus         4 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~   83 (273)
T 2pnn_A            4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT   83 (273)
T ss_dssp             -------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred             ccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence            34455678889999999999998887776653221111      12356789999999986   9999999999998754


Q ss_pred             ccc-ccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCC--------------CCCcHHHHHHHhCCcc
Q psy15728         75 NVE-INLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVND--------------AGDTPLHKAAFVGREV  138 (139)
Q Consensus        75 ~~~-~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~--------------~g~tpl~~A~~~g~~~  138 (139)
                      +.. ..++......|..|.||||+|+..|+.+++++|++.|++++.++.              .|+||||+|+..|+.+
T Consensus        84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~  162 (273)
T 2pnn_A           84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA  162 (273)
T ss_dssp             TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHH
T ss_pred             cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHH
Confidence            310 011222224677899999999999999999999999999999987              7999999999998754

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.76  E-value=4.1e-18  Score=111.05  Aligned_cols=83  Identities=25%  Similarity=0.336  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCC-CC
Q psy15728         45 VKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVN-DA  123 (139)
Q Consensus        45 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~-~~  123 (139)
                      ...+.++||+|+..|+.++++.|+. +.+++          .+|..|+||||+|+..++.+++++|++.|++++.++ ..
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~----------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~  109 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVD----------AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG  109 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTT----------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSS
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCC----------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCC
Confidence            4578999999999999999999998 53322          578899999999999999999999999999999998 88


Q ss_pred             CCcHHHHHHHhCCcc
Q psy15728        124 GDTPLHKAAFVGREV  138 (139)
Q Consensus       124 g~tpl~~A~~~g~~~  138 (139)
                      |+||||+|+..|+.+
T Consensus       110 g~tpL~~A~~~~~~~  124 (183)
T 3deo_A          110 GLTALHMAAGYVRPE  124 (183)
T ss_dssp             SCCHHHHHHHTTCHH
T ss_pred             CCCHHHHHHhcCcHH
Confidence            999999999998864

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.76  E-value=3.5e-19  Score=116.69  Aligned_cols=118  Identities=25%  Similarity=0.244  Sum_probs=96.2

Q ss_pred             cccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCC
Q psy15728          9 KFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKS   88 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d   88 (139)
                      .+..|.+++|.++..+.....+.+.. .+.+.+ ..+..+.++||+|+..|+.++++.|+..+++++          .+|
T Consensus        64 ~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~  131 (192)
T 2rfm_A           64 KDIEGSTALIWAVKNNRLGIAEKLLS-KGSNVN-TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN----------DRN  131 (192)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS----------CCC
T ss_pred             ccccCccHHHHHHHcCCHHHHHHHHH-CCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC----------CCC
Confidence            45678889999998877655443332 122222 234467899999999999999999999885443          578


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         89 NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        89 ~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      ..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+
T Consensus       132 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  181 (192)
T 2rfm_A          132 LEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQE  181 (192)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHH
Confidence            89999999999999999999999999999999999999999999999864

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.76  E-value=7e-19  Score=122.03  Aligned_cols=124  Identities=19%  Similarity=0.127  Sum_probs=77.1

Q ss_pred             cCCccccCCCCcchhhhhhccCCCccCCCchhh---------HHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhccccc
Q psy15728          5 HGRIKFAPGGNRTHDQVRTRHSSSEEETPNSLS---------AELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENN   75 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~   75 (139)
                      +.+.....+.+.+|.++..+......++.....         .......+..+.|+||+|+..|+.++++.|+..+.+.+
T Consensus         7 ~~~~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~   86 (285)
T 3d9h_A            7 HHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN   86 (285)
T ss_dssp             -----------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             cccccchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            345557889999999999998666555322111         11123345677899999999999999999999875433


Q ss_pred             ccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         76 VEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        76 ~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                                .+|..|.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+
T Consensus        87 ----------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~  139 (285)
T 3d9h_A           87 ----------IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWD  139 (285)
T ss_dssp             ----------EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHH
T ss_pred             ----------CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHH
Confidence                      56888999999999999999999999999999999999999999999988754

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.76  E-value=3.1e-19  Score=121.39  Aligned_cols=112  Identities=18%  Similarity=0.207  Sum_probs=84.6

Q ss_pred             CCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCC-CC
Q psy15728         12 PGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKS-NL   90 (139)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d-~~   90 (139)
                      .|.+++|.++..+.....+.+..  +.+.+. .+..+.||||+|+..|+.++++.|+..+++++          .++ ..
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~----------~~~~~~  110 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE--DRDVDA-VDENGRTALLFVAGLGSDKCVRLLAEAGADLD----------HRDMRG  110 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT--TCCTTC-BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCSSS
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc--CCCCCC-cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC----------cCCCCC
Confidence            45667788887777666555554  333333 33457888999999999999988888875443          344 66


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCC
Q psy15728         91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR  136 (139)
Q Consensus        91 g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~  136 (139)
                      |.||||+|+..++.+++++|+++|++++.+|..|+||||+|+..++
T Consensus       111 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~  156 (244)
T 3ui2_A          111 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK  156 (244)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh
Confidence            8899999999999999999999999999888889999988886543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.76  E-value=5.4e-19  Score=113.75  Aligned_cols=118  Identities=29%  Similarity=0.333  Sum_probs=85.8

Q ss_pred             cccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCC
Q psy15728          9 KFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKS   88 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d   88 (139)
                      .+..+.+.+|.++..+..+..+.+... +.+.+ ..+..+.++||+|+..|+.++++.|+..+++.+          .+|
T Consensus        43 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~----------~~~  110 (169)
T 2y1l_E           43 EDASGWTPLHLAAFNGHLEIVEVLLKN-GADVN-AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN----------AND  110 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------CCC
Confidence            355677788888777665443333221 11222 223456788888888888888888888774333          467


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         89 NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        89 ~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      ..|.||||+|+..++.+++++|++.|++++.+|..|.|||++|+..|+.+
T Consensus       111 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  160 (169)
T 2y1l_E          111 MEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED  160 (169)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHH
Confidence            78889999999999999999999889998888888999999988888753

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.76  E-value=7.3e-19  Score=119.80  Aligned_cols=118  Identities=18%  Similarity=0.118  Sum_probs=90.2

Q ss_pred             cccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCC
Q psy15728          9 KFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKS   88 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d   88 (139)
                      .+..|.++++.++..+.....+.+.. .+.+.+. .+..+.|+||+|+..|+.++++.|+..+++.+          .+|
T Consensus       120 ~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------~~~  187 (253)
T 1yyh_A          120 RMHDGTTPLILAARLAVEGMLEDLIN-SHADVNA-VDDLGKSALHWAAAVNNVDAAVVLLKNGANKD----------MQN  187 (253)
T ss_dssp             CCTTCCCHHHHHHHHTCSSHHHHHHH-TTCCTTC-BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT----------CCC
T ss_pred             cCCCCCcHHHHHHHcChHHHHHHHHH-cCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------CcC
Confidence            34567777777777776554433332 2222222 23456889999999999999999998875443          568


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         89 NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        89 ~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      ..|.||||+|+..++.+++++|++.|++++.+|..|+|||++|+..|+.+
T Consensus       188 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~  237 (253)
T 1yyh_A          188 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD  237 (253)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHH
Confidence            88999999999999999999999999999999999999999999998864

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.75  E-value=4.2e-19  Score=108.39  Aligned_cols=114  Identities=36%  Similarity=0.469  Sum_probs=90.7

Q ss_pred             CCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCC
Q psy15728         13 GGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGW   92 (139)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~   92 (139)
                      |.+.++.++..+..+..+.+... +.+.+ ..+..+.++||+|+..|+.++++.|+..+.+.+          .+|..|.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~----------~~~~~g~   69 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEA-GADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN----------AKDKNGR   69 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHH-TCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCTTSC
T ss_pred             CccHHHHHHHcCcHHHHHHHHHc-CCCCC-CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc----------ccCCCCC
Confidence            56677778777765544433321 22222 233467899999999999999999999875433          5788899


Q ss_pred             cHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        93 t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      ||||+|+..++.+++++|++.|++++.++..|.|||++|+..|+.+
T Consensus        70 t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  115 (126)
T 1n0r_A           70 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE  115 (126)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             cHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHH
Confidence            9999999999999999999999999999999999999999988754

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.75  E-value=2.2e-18  Score=117.38  Aligned_cols=124  Identities=17%  Similarity=0.180  Sum_probs=93.2

Q ss_pred             cccCCCCcchhhhhh---ccCCCccCCCchhhHHhhhcC----------HHHHHHHHHHHHHcCCHHHHHHHHHhccccc
Q psy15728          9 KFAPGGNRTHDQVRT---RHSSSEEETPNSLSAELNQLS----------VKEIHELFLYNCRNGQLDKIKQLLDHCKENN   75 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~   75 (139)
                      .+..|.+++|.++..   +..+..+.+.. .+.......          +..+.|+||+|+..|+.++++.|+..+++++
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~  117 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQ-IDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH  117 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHHHHHH-HHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCCCCCCHHHHHHHccccchHHHHHHHHh-cCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            467889999999988   77666554443 233332211          2468899999999999999999999986554


Q ss_pred             ccccc---cccCccCCCCCCcHHHHHHHhCCHHHHHHHHh---CCCCCCcCCCCCCcHHHHHHH
Q psy15728         76 VEINL---SQKGESKSNLGWTPLHLASYFGHKSVVEFLLD---QGVDINAVNDAGDTPLHKAAF  133 (139)
Q Consensus        76 ~~~~~---~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~---~ga~~~~~~~~g~tpl~~A~~  133 (139)
                      ..-..   .......|..|.||||+|+..++.+++++|++   .|++++.+|..|+||||+|+.
T Consensus       118 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~  181 (256)
T 2etb_A          118 LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM  181 (256)
T ss_dssp             CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH
T ss_pred             cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHH
Confidence            21000   00000112239999999999999999999999   999999999999999999998

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.75  E-value=1.3e-18  Score=118.63  Aligned_cols=125  Identities=11%  Similarity=0.138  Sum_probs=91.6

Q ss_pred             cCCCCcchhhh---hhccCCCccCCCchhhHHhh----------hcCHHHHHHHHHHHHHcCCHHHHHHHHHhccccccc
Q psy15728         11 APGGNRTHDQV---RTRHSSSEEETPNSLSAELN----------QLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVE   77 (139)
Q Consensus        11 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~   77 (139)
                      ..|.+++|.++   +.+..+..+.+... +....          ...+..+.|+||+|+..|+.++++.|+..+++++..
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~  122 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDI-AEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ  122 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHH-HHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHh-cccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc
Confidence            56889999988   55666554444332 11111          111236789999999999999999999998665531


Q ss_pred             cc----ccccCccCCCCCCcHHHHHHHhCCHHHHHHHHh---CCCCCCcCCCCCCcHHHHHHHhCC
Q psy15728         78 IN----LSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD---QGVDINAVNDAGDTPLHKAAFVGR  136 (139)
Q Consensus        78 ~~----~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~---~ga~~~~~~~~g~tpl~~A~~~g~  136 (139)
                      -.    ........+..|.||||+|+..|+.+++++|++   .|++++.+|..|+||||+|+..|+
T Consensus       123 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~  188 (260)
T 3jxi_A          123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIAD  188 (260)
T ss_dssp             CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhcc
Confidence            00    000000112679999999999999999999999   999999999999999999998765

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.75  E-value=3.8e-19  Score=121.16  Aligned_cols=126  Identities=19%  Similarity=0.144  Sum_probs=97.1

Q ss_pred             CCCcchhhhhhccCCCccCCCchh---hHHhhh---cCHHHHHHHHHHHHHc---CCHHHHHHHHHhcccccc-cccccc
Q psy15728         13 GGNRTHDQVRTRHSSSEEETPNSL---SAELNQ---LSVKEIHELFLYNCRN---GQLDKIKQLLDHCKENNV-EINLSQ   82 (139)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~l~~a~~~---g~~~~~~~ll~~~~~~~~-~~~~~~   82 (139)
                      |.+++|.++..+..+..+.+...+   +.+.+.   ..+..+.|+||+|+..   |+.++++.|+..+++.+. ...++.
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            456788889888887666555432   222222   2456789999999999   999999999999876652 111222


Q ss_pred             cCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCC-------------CCcHHHHHHHhCCcc
Q psy15728         83 KGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDA-------------GDTPLHKAAFVGREV  138 (139)
Q Consensus        83 ~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~-------------g~tpl~~A~~~g~~~  138 (139)
                      ....+|..|.||||+|+..|+.+++++|++.|++++.++..             |.||||+|+..|+.+
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~  150 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD  150 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHH
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHH
Confidence            22235678999999999999999999999999999999887             999999999998754

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.75  E-value=3.5e-18  Score=115.29  Aligned_cols=81  Identities=28%  Similarity=0.393  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCc
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDT  126 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~t  126 (139)
                      .+.++||+|+..|+.++++.|+..+++++          .+|..|.||||+|+..|+.+++++|++.|++++.+|..|+|
T Consensus        20 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t   89 (229)
T 2vge_A           20 NPLVLLLDAALTGELEVVQQAVKEMNDPS----------QPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWT   89 (229)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHSSCTT----------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             chhHHHHHHHHcCCHHHHHHHHhcCCCCC----------CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC
Confidence            44566666666666666666666553222          34555666666666666666666666666666666666666


Q ss_pred             HHHHHHHhCCc
Q psy15728        127 PLHKAAFVGRE  137 (139)
Q Consensus       127 pl~~A~~~g~~  137 (139)
                      |||+|+..|+.
T Consensus        90 pLh~A~~~g~~  100 (229)
T 2vge_A           90 PLHCAASCNDT  100 (229)
T ss_dssp             HHHHHHHTTCH
T ss_pred             HHHHHHHcCCH
Confidence            66666666554

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.75  E-value=3.7e-18  Score=116.28  Aligned_cols=119  Identities=23%  Similarity=0.241  Sum_probs=59.0

Q ss_pred             ccccCCCCcchhhhhhc-------------cCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccc
Q psy15728          8 IKFAPGGNRTHDQVRTR-------------HSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKEN   74 (139)
Q Consensus         8 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~   74 (139)
                      .++..|.+++|.++..+             .....+.+. ..+.......+..+.|+||+|+..|+.++++.|+..+++.
T Consensus         5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll-~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~   83 (253)
T 1yyh_A            5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFI-YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA   83 (253)
T ss_dssp             ------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHH-HccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            45677888999988866             333333333 3344555555667889999999999999999999887554


Q ss_pred             cccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCC-CCCcCCCCCCcHHHHHHHhCCc
Q psy15728         75 NVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV-DINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        75 ~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga-~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                      +          .+|..|.||||+|+..++.+++++|++.|+ +++.++..|.||||+|+..|+.
T Consensus        84 ~----------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  137 (253)
T 1yyh_A           84 N----------IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE  137 (253)
T ss_dssp             T----------CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCS
T ss_pred             C----------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChH
Confidence            4          345556666666666666666666666654 5666666666666666665554

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.75  E-value=4.9e-20  Score=114.81  Aligned_cols=85  Identities=33%  Similarity=0.491  Sum_probs=77.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCC
Q psy15728         44 SVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDA  123 (139)
Q Consensus        44 ~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~  123 (139)
                      .+..+.++||+|+..|+.++++.|+..+++.+          .+|..|.||||+|+..++.+++++|++.|++++.++..
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~----------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~   75 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPN----------VKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ   75 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC----------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGG
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCC
Confidence            45567899999999999999999999885443          57888999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHhCCcc
Q psy15728        124 GDTPLHKAAFVGREV  138 (139)
Q Consensus       124 g~tpl~~A~~~g~~~  138 (139)
                      |+||||+|+..|+.+
T Consensus        76 g~t~L~~A~~~~~~~   90 (137)
T 3c5r_A           76 NDSPLHDAAKNGHVD   90 (137)
T ss_dssp             GCCHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHcCCHH
Confidence            999999999998764

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.75  E-value=4.2e-19  Score=107.42  Aligned_cols=84  Identities=36%  Similarity=0.538  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCC
Q psy15728         45 VKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAG  124 (139)
Q Consensus        45 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g  124 (139)
                      +..+.++||+|+..|+.++++.|+..+++.+          .+|..|.||||+|+..++.+++++|++.|++++.+|..|
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~----------~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g   75 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVN----------ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG   75 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS----------CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCC
Confidence            4466899999999999999999998874433          578889999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhCCcc
Q psy15728        125 DTPLHKAAFVGREV  138 (139)
Q Consensus       125 ~tpl~~A~~~g~~~  138 (139)
                      +||||+|+..|+.+
T Consensus        76 ~tpl~~A~~~~~~~   89 (115)
T 2l6b_A           76 NTPEHLAKKNGHHE   89 (115)
T ss_dssp             CCTTHHHHTTTCHH
T ss_pred             CCHHHHHHHCCCHH
Confidence            99999999988754

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.75  E-value=5.4e-19  Score=122.19  Aligned_cols=84  Identities=26%  Similarity=0.344  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHh-CCCCCCcCCCC
Q psy15728         45 VKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD-QGVDINAVNDA  123 (139)
Q Consensus        45 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~-~ga~~~~~~~~  123 (139)
                      +..+.|+||+|+..|+.++++.|+..+++++          .+|..|+||||+|+..|+.+++++|++ .|++++.+|..
T Consensus       180 ~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n----------~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~  249 (276)
T 4hbd_A          180 SQAGQTALMLAVSHGRVDVVKALLACEADVN----------VQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRD  249 (276)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC----------CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCC
Confidence            3457899999999999999999999986544          578899999999999999999999999 89999999999


Q ss_pred             CCcHHHHHHHhCCcc
Q psy15728        124 GDTPLHKAAFVGREV  138 (139)
Q Consensus       124 g~tpl~~A~~~g~~~  138 (139)
                      |+||||+|+..|+.+
T Consensus       250 g~TpL~~A~~~g~~~  264 (276)
T 4hbd_A          250 GSTALMVALDAGQSE  264 (276)
T ss_dssp             SCCHHHHHHHHTCHH
T ss_pred             CCCHHHHHHHcCCHH
Confidence            999999999999864

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.74  E-value=2.3e-18  Score=115.96  Aligned_cols=88  Identities=28%  Similarity=0.369  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCC-CCC
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVND-AGD  125 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~-~g~  125 (139)
                      .+.++||+|+..|+.++++.|+..++.......    .+..+..|.||||+|+..++.+++++|++.|++++.++. .|+
T Consensus        77 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~  152 (236)
T 1ikn_D           77 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI----LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR  152 (236)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCG----GGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcccchhHHHH----hhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            344555555555555555555555433222111    225677888899999988999999999988999988887 889


Q ss_pred             cHHHHHHHhCCcc
Q psy15728        126 TPLHKAAFVGREV  138 (139)
Q Consensus       126 tpl~~A~~~g~~~  138 (139)
                      ||||+|+..|+.+
T Consensus       153 tpL~~A~~~~~~~  165 (236)
T 1ikn_D          153 TALHLAVDLQNPD  165 (236)
T ss_dssp             CHHHHHHHTTCHH
T ss_pred             CHHHHHHHcCCHH
Confidence            9999998888754

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.74  E-value=7.7e-19  Score=111.36  Aligned_cols=112  Identities=17%  Similarity=0.185  Sum_probs=88.1

Q ss_pred             CcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcH
Q psy15728         15 NRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTP   94 (139)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~   94 (139)
                      +.++.++..+..+..+.+..... ......+..+.++||+ +..|+.++++.|+..+++++          .+|..|.||
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~----------~~~~~g~t~   71 (156)
T 1bd8_A            4 DRLSGAAARGDVQEVRRLLHREL-VHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN----------VQDTSGTSP   71 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTC-CCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT----------CCCTTSCCH
T ss_pred             hHHHHHHHhCCHHHHHHHHHhhC-cCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC----------CcCCCCCCH
Confidence            34556666666555444433311 1122234567899999 99999999999999885443          578889999


Q ss_pred             HHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         95 LHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        95 l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      ||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus        72 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  115 (156)
T 1bd8_A           72 VHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA  115 (156)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHH
Confidence            99999999999999999999999999999999999999998764

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.74  E-value=3.3e-18  Score=108.29  Aligned_cols=84  Identities=26%  Similarity=0.318  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCC
Q psy15728         45 VKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAG  124 (139)
Q Consensus        45 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g  124 (139)
                      +..+.++||+|+..|+.++++.|+..+.+.+          .+|..|.||||+|+..++.+++++|++.|++++.+|..|
T Consensus        31 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  100 (153)
T 1awc_B           31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD----------ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLK  100 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT----------CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTS
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------CCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCC
Confidence            4467899999999999999999998875433          578889999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhCCcc
Q psy15728        125 DTPLHKAAFVGREV  138 (139)
Q Consensus       125 ~tpl~~A~~~g~~~  138 (139)
                      +||||+|+..|+.+
T Consensus       101 ~t~L~~A~~~~~~~  114 (153)
T 1awc_B          101 MTALHWATEHNHQE  114 (153)
T ss_dssp             CCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHcCCHH
Confidence            99999999998754

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.74  E-value=6.5e-19  Score=112.25  Aligned_cols=117  Identities=26%  Similarity=0.296  Sum_probs=85.4

Q ss_pred             cccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCC
Q psy15728          9 KFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKS   88 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d   88 (139)
                      .+..+.+++|.++. +.....+.+.. .+.+.+ ..+..+.++||+|+..|+.++++.|+..+.+++          .+|
T Consensus        34 ~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~  100 (162)
T 1ihb_A           34 QNGFGRTALQVMKL-GNPEIARRLLL-RGANPD-LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN----------IED  100 (162)
T ss_dssp             CCTTSCCHHHHCCS-SCHHHHHHHHH-TTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT----------CCC
T ss_pred             cCccCccHHHHHHc-CcHHHHHHHHH-cCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------CcC
Confidence            34566677777655 44333222221 112222 223466889999999999999999998874433          578


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCC-CCcCCCCCCcHHHHHHHhCCcc
Q psy15728         89 NLGWTPLHLASYFGHKSVVEFLLDQGVD-INAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        89 ~~g~t~l~~a~~~~~~~~~~~Ll~~ga~-~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      ..|.||||+|+..++.+++++|++.|++ ++.++..|+||||+|+..|+.+
T Consensus       101 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~  151 (162)
T 1ihb_A          101 NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE  151 (162)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence            8899999999999999999999999998 5889999999999999988754

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.74  E-value=1.6e-18  Score=119.07  Aligned_cols=84  Identities=29%  Similarity=0.298  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCC-CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCC
Q psy15728         45 VKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSN-LGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDA  123 (139)
Q Consensus        45 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~-~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~  123 (139)
                      ...+.++||+|+..|+.++++.|+..+++++          ..+. .|.||||+|+..++.+++++|++.|++++.+|..
T Consensus       155 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~  224 (282)
T 1oy3_D          155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLN----------KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG  224 (282)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT----------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCcCHHHHHHHcCCHHHHHHHHHcCCCCC----------CCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Confidence            3466789999999999999999998885544          3443 4999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHhCCcc
Q psy15728        124 GDTPLHKAAFVGREV  138 (139)
Q Consensus       124 g~tpl~~A~~~g~~~  138 (139)
                      |+||||+|+..|+.+
T Consensus       225 g~tpL~~A~~~~~~~  239 (282)
T 1oy3_D          225 GRTPLGSALLRPNPI  239 (282)
T ss_dssp             SCCHHHHHHTSSCHH
T ss_pred             CCCHHHHHHHcCCcH
Confidence            999999999888754

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.74  E-value=8.7e-19  Score=117.16  Aligned_cols=81  Identities=21%  Similarity=0.248  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCC-CCCCcCCCCCC
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG-VDINAVNDAGD  125 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~g-a~~~~~~~~g~  125 (139)
                      .+.++||+|+..|+.++++.|+..+.+.+          .+|..|.||||+|+..++.+++++|++.| ++++.+|..|+
T Consensus       106 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~----------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~  175 (228)
T 2dzn_A          106 QGVTCLHLAVGKKWFEVSQFLIENGASVR----------IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW  175 (228)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCSC----------CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSC
T ss_pred             CCCCHHHHHHHcCCHhHHHHHHHcCCCcc----------ccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCC
Confidence            44566666666666666666666553222          45666777777777777777777777777 77777777777


Q ss_pred             cHHHHHHHhCCc
Q psy15728        126 TPLHKAAFVGRE  137 (139)
Q Consensus       126 tpl~~A~~~g~~  137 (139)
                      ||||+|+..|+.
T Consensus       176 t~L~~A~~~~~~  187 (228)
T 2dzn_A          176 TPLFHALAEGHG  187 (228)
T ss_dssp             CHHHHHHHTTCH
T ss_pred             CHHHHHHHcCCH
Confidence            777777776664

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.74  E-value=8.5e-18  Score=114.29  Aligned_cols=82  Identities=24%  Similarity=0.326  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCC-CCC
Q psy15728         46 KEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVN-DAG  124 (139)
Q Consensus        46 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~-~~g  124 (139)
                      ..+.|+||+|+..|+.++++.|+. +.+++          .+|..|.||||+|+..|+.+++++|++.|++++.++ ..|
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~----------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g  111 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVD----------AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG  111 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTT----------CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCC----------CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCC
Confidence            478999999999999999999998 63332          578889999999999999999999999999999998 789


Q ss_pred             CcHHHHHHHhCCcc
Q psy15728        125 DTPLHKAAFVGREV  138 (139)
Q Consensus       125 ~tpl~~A~~~g~~~  138 (139)
                      +||||+|+..|+.+
T Consensus       112 ~t~L~~A~~~g~~~  125 (244)
T 3ui2_A          112 LTALHMAAGYVRPE  125 (244)
T ss_dssp             CCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHcCCHH
Confidence            99999999999864

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.74  E-value=2.3e-18  Score=115.96  Aligned_cols=81  Identities=25%  Similarity=0.285  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCC-CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCC
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSN-LGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGD  125 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~-~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~  125 (139)
                      .+.++||+|+..|+.++++.|+..+++++          .++. .|.||||+|+..++.+++++|++.|++++.++..|.
T Consensus       116 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  185 (236)
T 1ikn_D          116 NGHTCLHLASIHGYLGIVELLVSLGADVN----------AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY  185 (236)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHTCCTT----------CCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCC
Confidence            45556666666666666666665553332          2343 556666666666666666666666666666666666


Q ss_pred             cHHHHHHHhCCc
Q psy15728        126 TPLHKAAFVGRE  137 (139)
Q Consensus       126 tpl~~A~~~g~~  137 (139)
                      ||||+|+..|+.
T Consensus       186 tpl~~A~~~~~~  197 (236)
T 1ikn_D          186 SPYQLTWGRPST  197 (236)
T ss_dssp             CGGGGCTTSSCH
T ss_pred             CHHHHHHccCch
Confidence            666666555543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.73  E-value=5.2e-19  Score=123.89  Aligned_cols=84  Identities=19%  Similarity=0.249  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHc---CCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCC
Q psy15728         45 VKEIHELFLYNCRN---GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVN  121 (139)
Q Consensus        45 ~~~~~~~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  121 (139)
                      ...+.|+||+|+..   |+.++++.||..+++++          .+|..|.||||+|+..|+.+++++|++.|++++.+|
T Consensus       187 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn----------~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d  256 (301)
T 2b0o_E          187 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD----------AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVN  256 (301)
T ss_dssp             CSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT----------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCC
T ss_pred             CCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC----------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            45678999999987   89999999999985443          578899999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHhCCcc
Q psy15728        122 DAGDTPLHKAAFVGREV  138 (139)
Q Consensus       122 ~~g~tpl~~A~~~g~~~  138 (139)
                      ..|+||||+|+..|+.+
T Consensus       257 ~~G~TpL~~A~~~~~~~  273 (301)
T 2b0o_E          257 EAGETALDIARKKHHKE  273 (301)
T ss_dssp             TTSCCHHHHHHHHTCHH
T ss_pred             CCCCCHHHHHHHcCCHH
Confidence            99999999999998864

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.73  E-value=6.9e-18  Score=103.23  Aligned_cols=111  Identities=21%  Similarity=0.217  Sum_probs=86.8

Q ss_pred             CCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCC
Q psy15728         12 PGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLG   91 (139)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g   91 (139)
                      .+.+.++.++..+..+..+.+.. .+.+.+ ..+..+.++||+|+..|+.++++.|+..+++++          .+|..|
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~d~~g   73 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVA-KGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADIN----------APDKHH   73 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHH-TTCCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT----------CCCTTS
T ss_pred             ccchHHHHHHHcCCHHHHHHHHH-cCCCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC----------cCCCCC
Confidence            44566777777776554443332 122222 234467899999999999999999998875443          578899


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHh
Q psy15728         92 WTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFV  134 (139)
Q Consensus        92 ~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~  134 (139)
                      +||||+|+..++.+++++|++.|++++.+|..|+||||+|...
T Consensus        74 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           74 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCH
Confidence            9999999999999999999999999999999999999998543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.73  E-value=6.9e-19  Score=109.56  Aligned_cols=82  Identities=26%  Similarity=0.367  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCC-C
Q psy15728         46 KEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDA-G  124 (139)
Q Consensus        46 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~-g  124 (139)
                      ..+.++||+|+..|+.++++.|+..+++++          .+|..|.||||+|+. ++.+++++|++.|++++.++.. |
T Consensus        10 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g   78 (136)
T 1d9s_A           10 GSSDAGLATAAARGQVETVRQLLEAGADPN----------ALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATL   78 (136)
T ss_dssp             CCCSCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTT
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHcCCCcC----------CcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCC
Confidence            456799999999999999999999885433          578889999999999 9999999999999999999999 9


Q ss_pred             CcHHHHHHHhCCcc
Q psy15728        125 DTPLHKAAFVGREV  138 (139)
Q Consensus       125 ~tpl~~A~~~g~~~  138 (139)
                      +||||+|+..|+.+
T Consensus        79 ~t~L~~A~~~~~~~   92 (136)
T 1d9s_A           79 TRPVHDAAREGFLD   92 (136)
T ss_dssp             BCHHHHHHHHTCHH
T ss_pred             CCHHHHHHHcCCHH
Confidence            99999999998764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.73  E-value=4.1e-18  Score=117.54  Aligned_cols=119  Identities=22%  Similarity=0.178  Sum_probs=80.4

Q ss_pred             ccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCC
Q psy15728         10 FAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSN   89 (139)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~   89 (139)
                      +..+.++++.++..+.....-......+.+++. .+..+.||||+|+..|+.++++.|+..+++.+          .++.
T Consensus        49 ~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~-~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~----------~~~~  117 (269)
T 4b93_B           49 DPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNV-TSQDGSSPLHVAALHGRADLIPLLLKHGANAG----------ARNA  117 (269)
T ss_dssp             --------------------------CCCCTTC-CCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTT----------CCCT
T ss_pred             CccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcC----------ccCC
Confidence            344556677776655543322223333333333 34567899999999999999999999885443          5788


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCccC
Q psy15728         90 LGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREVG  139 (139)
Q Consensus        90 ~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~c  139 (139)
                      .|.||+|+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.++
T Consensus       118 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~  167 (269)
T 4b93_B          118 DQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHEL  167 (269)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGG
T ss_pred             CCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence            89999999999999999999999999999999999999999999998753

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.73  E-value=1.8e-18  Score=116.09  Aligned_cols=120  Identities=20%  Similarity=0.148  Sum_probs=95.0

Q ss_pred             CCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCC
Q psy15728         13 GGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGW   92 (139)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~   92 (139)
                      |.+++|.++..+.....+.+....+.+.+. .+..+.|+||+|+..|+.++++.|+..+++...     ...+..|..|.
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-----~~~~~~~~~g~   76 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLLKFEGCEVHQ-RGAMGETALHIAALYDNLEAAMVLMEAAPELVF-----EPMTSELYEGQ   76 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHHTTTCSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG-----CCCCSTTTTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCCCccc-CCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcc-----ccccccCCCCc
Confidence            567888888888766655554433333333 345778999999999999999999999865421     11125688899


Q ss_pred             cHHHHHHHhCCHHHHHHHHhCCCCCCcCCC-------------CCCcHHHHHHHhCCcc
Q psy15728         93 TPLHLASYFGHKSVVEFLLDQGVDINAVND-------------AGDTPLHKAAFVGREV  138 (139)
Q Consensus        93 t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~-------------~g~tpl~~A~~~g~~~  138 (139)
                      ||||+|+..++.+++++|++.|++++.++.             .|+||||+|+..|+.+
T Consensus        77 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  135 (232)
T 2rfa_A           77 TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEE  135 (232)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHH
Confidence            999999999999999999999999998876             7999999999998754

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.73  E-value=1.4e-18  Score=114.16  Aligned_cols=82  Identities=21%  Similarity=0.364  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhc-ccccccccccccCccCCCCCCcHHHHHHHhCC-----HHHHHHHHhCCCCCCcC
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHC-KENNVEINLSQKGESKSNLGWTPLHLASYFGH-----KSVVEFLLDQGVDINAV  120 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~-~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~-----~~~~~~Ll~~ga~~~~~  120 (139)
                      .+.++||+|+..|+.++++.|+..+ .+.          +.+|..|.||||+|+..+.     .+++++|++.|++++.+
T Consensus       105 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~  174 (201)
T 3hra_A          105 YGGNALIPAAEKGHIDNVKLLLEDGREDI----------DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK  174 (201)
T ss_dssp             TSCCSHHHHHHTTCHHHHHHHHHHCCCCT----------TCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCc----------CCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCcc
Confidence            4456677777777777777776665 222          2567778888888888877     78888888888888888


Q ss_pred             CCCCCcHHHHHHHhCCcc
Q psy15728        121 NDAGDTPLHKAAFVGREV  138 (139)
Q Consensus       121 ~~~g~tpl~~A~~~g~~~  138 (139)
                      |..|+||||+|+..|+.+
T Consensus       175 ~~~g~t~l~~A~~~~~~~  192 (201)
T 3hra_A          175 DNSGRTAMDYANQKGYTE  192 (201)
T ss_dssp             CTTSCCHHHHHHHHTCHH
T ss_pred             CCCCCCHHHHHHHcCCHh
Confidence            888888888888877653

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.73  E-value=5.9e-19  Score=122.45  Aligned_cols=118  Identities=15%  Similarity=0.054  Sum_probs=92.6

Q ss_pred             CccccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCcc
Q psy15728          7 RIKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGES   86 (139)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~   86 (139)
                      ..++..|.+++|.++..+..+..+.+... +.+.+..   ++.|+||+|+..|+.++++.|+..+++++          .
T Consensus        25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~----------~   90 (285)
T 3kea_A           25 FKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLL---ENEFPLHQAATLEDTKIVKILLFSGLDDS----------Q   90 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCC---TTCCHHHHHTTSSSCHHHHHHHHTTCCTT----------C
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCC----------C
Confidence            34567788889999888876665444432 3333333   47889999999999999999998875443          5


Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCC-CcHHHHHHHhCCcc
Q psy15728         87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAG-DTPLHKAAFVGREV  138 (139)
Q Consensus        87 ~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g-~tpl~~A~~~g~~~  138 (139)
                      +|..|.||||+|+..++.+++++|++.|++++.++..| .||||+|+..|+.+
T Consensus        91 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~  143 (285)
T 3kea_A           91 FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS  143 (285)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH
Confidence            67889999999999999999999999999999999988 79999999888753

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.72  E-value=5.7e-18  Score=116.38  Aligned_cols=127  Identities=20%  Similarity=0.212  Sum_probs=93.0

Q ss_pred             cccCCCCcchhhhhh---ccCCCccCCCchhhHH-------hhh---cCHHHHHHHHHHHHHcCCHHHHHHHHHhccccc
Q psy15728          9 KFAPGGNRTHDQVRT---RHSSSEEETPNSLSAE-------LNQ---LSVKEIHELFLYNCRNGQLDKIKQLLDHCKENN   75 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~   75 (139)
                      .+..|.+++|.++..   +..+..+.+... +..       .+.   ..+..+.|+||+|+..|+.++++.|+..+++++
T Consensus        50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~-ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~  128 (273)
T 2pnn_A           50 DPETGKTCLLKAMLNLHNGQNDTIALLLDV-ARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ  128 (273)
T ss_dssp             CTTTCCCHHHHHHHSCBTTBCHHHHHHHHH-HHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             cCcCCCCHHHHHHHHHhcCChHHHHHHHHh-hccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            367889999999965   554443333322 221       111   123468899999999999999999999986655


Q ss_pred             ccccc----cccCccCCCCCCcHHHHHHHhCCHHHHHHHHh---CCCCCCcCCCCCCcHHHHHHHhCC
Q psy15728         76 VEINL----SQKGESKSNLGWTPLHLASYFGHKSVVEFLLD---QGVDINAVNDAGDTPLHKAAFVGR  136 (139)
Q Consensus        76 ~~~~~----~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~---~ga~~~~~~~~g~tpl~~A~~~g~  136 (139)
                      ..-..    .......+..|.||||+|+..++.+++++|++   .|++++.+|..|+||||+|+..|+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~  196 (273)
T 2pnn_A          129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD  196 (273)
T ss_dssp             CCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             ccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccC
Confidence            31100    00001123479999999999999999999999   999999999999999999999876

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.72  E-value=1.3e-18  Score=118.68  Aligned_cols=126  Identities=22%  Similarity=0.169  Sum_probs=96.9

Q ss_pred             CCCcchhhhhhccCCCccCCCchhhHHhhhcCH------HHHHHHHHHHH---HcCCHHHHHHHHHhcccccccc-cccc
Q psy15728         13 GGNRTHDQVRTRHSSSEEETPNSLSAELNQLSV------KEIHELFLYNC---RNGQLDKIKQLLDHCKENNVEI-NLSQ   82 (139)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~a~---~~g~~~~~~~ll~~~~~~~~~~-~~~~   82 (139)
                      +.+.++.+++.+.....+.+...+.........      ..+.|+||+|+   ..|+.++++.|+..+++.+... .++.
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   84 (260)
T 3jxi_A            5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINS   84 (260)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTC
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcc
Confidence            456788899988888777766643332233322      44889999999   7799999999999987643210 0112


Q ss_pred             cCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCC--------------CCCCcHHHHHHHhCCcc
Q psy15728         83 KGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVN--------------DAGDTPLHKAAFVGREV  138 (139)
Q Consensus        83 ~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~--------------~~g~tpl~~A~~~g~~~  138 (139)
                      .....|..|+||||+|+..|+.+++++|++.|++++.++              ..|+||||+|+..|+.+
T Consensus        85 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~  154 (260)
T 3jxi_A           85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH  154 (260)
T ss_dssp             CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHH
T ss_pred             cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHH
Confidence            222556789999999999999999999999999999998              68999999999999864

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.72  E-value=7.6e-18  Score=112.64  Aligned_cols=82  Identities=33%  Similarity=0.442  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhC-CCCCCcCCCCCC
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-GVDINAVNDAGD  125 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~-ga~~~~~~~~g~  125 (139)
                      .+.++||+|+..|+.++++.|+..+.+++          .+|..|.||||+|+..++.+++++|++. |++++.+|..|+
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~  141 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRVGVN----------GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGD  141 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSC
T ss_pred             ccccccccccccCcHHHHHHHHhCCCCcc----------ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCC
Confidence            45789999999999999999999875433          5788899999999999999999999998 999999999999


Q ss_pred             cHHHHHHHhCCcc
Q psy15728        126 TPLHKAAFVGREV  138 (139)
Q Consensus       126 tpl~~A~~~g~~~  138 (139)
                      ||||+|+..|+.+
T Consensus       142 tpL~~A~~~~~~~  154 (222)
T 3ehr_A          142 TALHAAAWKGYAD  154 (222)
T ss_dssp             CHHHHHHHHTCHH
T ss_pred             CHHHHHHHcCCHH
Confidence            9999999998864

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.72  E-value=2.6e-18  Score=114.59  Aligned_cols=49  Identities=24%  Similarity=0.183  Sum_probs=21.8

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCC
Q psy15728         88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR  136 (139)
Q Consensus        88 d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~  136 (139)
                      |..|.||||+|+..++.+++++|++.|++++.++..|.|||++|+..|+
T Consensus       155 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  203 (223)
T 2f8y_A          155 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH  203 (223)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             CCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcc
Confidence            3344444444444444444444444444444444444444444444443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.72  E-value=1.1e-18  Score=124.28  Aligned_cols=123  Identities=14%  Similarity=0.117  Sum_probs=97.8

Q ss_pred             cccCCCCcchhhhhhc--cCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCcc
Q psy15728          9 KFAPGGNRTHDQVRTR--HSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGES   86 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~   86 (139)
                      .+..+.++++.++..+  ..+..+.+... +.+.+. .+..+.|+||+|+..|+.++++.|+..+++... ++    .+.
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~----~~~  206 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTA-KDKADETPLMRAMEFRNREALDLMMDTVPSKSS-LR----LDY  206 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSS-CC----TTC
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHhccccccc-cc----ccc
Confidence            5667899999999888  44443333322 333332 345678999999999999999999999865211 11    226


Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        87 ~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      .|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus       207 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~  258 (364)
T 3ljn_A          207 ANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVL  258 (364)
T ss_dssp             CCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHH
Confidence            7889999999999999999999999999999999999999999999999864

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.72  E-value=6.1e-18  Score=116.89  Aligned_cols=98  Identities=26%  Similarity=0.292  Sum_probs=77.4

Q ss_pred             hhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcc-ccccccc----------------------------ccccCccCCCCC
Q psy15728         41 NQLSVKEIHELFLYNCRNGQLDKIKQLLDHCK-ENNVEIN----------------------------LSQKGESKSNLG   91 (139)
Q Consensus        41 ~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~-~~~~~~~----------------------------~~~~~~~~d~~g   91 (139)
                      ....+..+.|+||+|+..|+.++++.|+..++ +.+..-.                            .....+..+..|
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g  183 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAG  183 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTC
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCC
Confidence            34455677888888888888888888888876 3332100                            001123467789


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         92 WTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        92 ~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      .||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus       184 ~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~  230 (276)
T 4hbd_A          184 QTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKE  230 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence            99999999999999999999999999999999999999999999864

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.72  E-value=1.2e-18  Score=118.02  Aligned_cols=116  Identities=19%  Similarity=0.158  Sum_probs=91.5

Q ss_pred             CCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCC
Q psy15728         12 PGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLG   91 (139)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g   91 (139)
                      .+.+.++.++..+..+..+.+... +.+.+ ..+..+.|+||+|+..|+.++++.|+..+++++          .+|..|
T Consensus        36 ~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~----------~~d~~g  103 (239)
T 1ycs_B           36 LPLALLLDSSLEGEFDLVQRIIYE-VDDPS-LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN----------AADSDG  103 (239)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTST-TSSCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT----------CCCTTC
T ss_pred             hhhHHHHHHHHcCCHHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------ccCCCC
Confidence            345667778877776555544432 22222 234567899999999999999999999885443          578899


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCC-cHHHHH--HHhCCccC
Q psy15728         92 WTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGD-TPLHKA--AFVGREVG  139 (139)
Q Consensus        92 ~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~-tpl~~A--~~~g~~~c  139 (139)
                      +||||+|+..++.+++++|++.|++++.++..|. ||||+|  +..|+.+|
T Consensus       104 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~  154 (239)
T 1ycs_B          104 WTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC  154 (239)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHH
Confidence            9999999999999999999999999999998877 999999  66777653

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.72  E-value=1.7e-17  Score=101.16  Aligned_cols=81  Identities=42%  Similarity=0.580  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcH
Q psy15728         48 IHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTP  127 (139)
Q Consensus        48 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tp  127 (139)
                      +.++||+|+..|+.++++.|+..+.+.+          ..|..|.||||+|+..++.+++++|++.|++++.++..|.||
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~----------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   71 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVN----------AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP   71 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTT----------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCC----------CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcH
Confidence            4689999999999999999999875433          578889999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCcc
Q psy15728        128 LHKAAFVGREV  138 (139)
Q Consensus       128 l~~A~~~g~~~  138 (139)
                      ||+|+..|+.+
T Consensus        72 l~~A~~~~~~~   82 (126)
T 1n0r_A           72 LHLAARNGHLE   82 (126)
T ss_dssp             HHHHHHTTCHH
T ss_pred             HHHHHHcChHH
Confidence            99999998753

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.72  E-value=4.1e-18  Score=113.61  Aligned_cols=120  Identities=18%  Similarity=0.189  Sum_probs=97.8

Q ss_pred             ccccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccC
Q psy15728          8 IKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESK   87 (139)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~   87 (139)
                      ..+..+.++++.++..+..+..+.+...... ........+.++||+|+..|+.++++.|+..+++.+          ..
T Consensus        53 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~----------~~  121 (223)
T 2f8y_A           53 IQDNMGRTPLHAAVSADAQGVFQILIRNRAT-DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN----------AV  121 (223)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHBTTS-CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT----------CB
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc----------Cc
Confidence            4467788999999988876655444332211 222334567899999999999999999999885443          57


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        88 d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      |..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.+
T Consensus       122 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  172 (223)
T 2f8y_A          122 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE  172 (223)
T ss_dssp             CTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHH
Confidence            888999999999999999999999999999999999999999999998764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.72  E-value=4.4e-17  Score=104.76  Aligned_cols=116  Identities=30%  Similarity=0.429  Sum_probs=91.4

Q ss_pred             cCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCC
Q psy15728         11 APGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNL   90 (139)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~   90 (139)
                      ..+.+.++.+++.+..+..+.+... +.+.+. .+..+.++||+|+..|+.++++.|+..+++.+          ..|..
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~~~   79 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMAN-GADVNA-EDASGWTPLHLAAFNGHLEIVEVLLKNGADVN----------AVDHA   79 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTT
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHC-CCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------ccCCC
Confidence            3445567778877777665554432 333332 34567899999999999999999998874433          56888


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        91 g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      |.||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus        80 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  127 (169)
T 2y1l_E           80 GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLE  127 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999999999999999999999999999988754

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.72  E-value=2.7e-18  Score=114.78  Aligned_cols=122  Identities=25%  Similarity=0.266  Sum_probs=92.0

Q ss_pred             cccCCCCcchhhhhhccCCCccCCCchh-hHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccC
Q psy15728          9 KFAPGGNRTHDQVRTRHSSSEEETPNSL-SAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESK   87 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~   87 (139)
                      .+..|.+++|.++..+..+..+.+.... ..+........+.++||+|+..|+.++++.|+..+....        .+..
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--------~~~~  103 (228)
T 2dzn_A           32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD--------LNKI  103 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCC--------TTCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc--------cccC
Confidence            4667788888888877655443333221 122222244567889999999999999999988762111        1156


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        88 d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      +..|.||||+|+..++.+++++|++.|++++.++..|+||||+|+..|+.+
T Consensus       104 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  154 (228)
T 2dzn_A          104 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK  154 (228)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             CcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH
Confidence            888999999999999999999999999999999999999999999988753

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.71  E-value=3.6e-18  Score=120.30  Aligned_cols=116  Identities=24%  Similarity=0.275  Sum_probs=92.7

Q ss_pred             CCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCC
Q psy15728         12 PGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLG   91 (139)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g   91 (139)
                      .+.+.++.+++.+.......+....+...+. .+..+.|+||+|+..|+.++++.|+..+++++          .+|..|
T Consensus        23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------~~~~~g   91 (351)
T 3utm_A           23 YKKDELLEAARSGNEEKLMALLTPLNVNCHA-SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH----------AKDKGG   91 (351)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCC-SSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTC
T ss_pred             ccchhHHHHHHcCCHHHHHHHHHhcCCCccc-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------ccCCCC
Confidence            3455677788777776655555443333332 34467899999999999999999999885443          578889


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         92 WTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        92 ~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      .||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+
T Consensus        92 ~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  138 (351)
T 3utm_A           92 LVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVE  138 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             CcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            99999999999999999999999999999999999999999988754

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.71  E-value=5.3e-19  Score=114.67  Aligned_cols=118  Identities=25%  Similarity=0.271  Sum_probs=95.0

Q ss_pred             ccccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccC
Q psy15728          8 IKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESK   87 (139)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~   87 (139)
                      ..+..|.+++|.++..+.....+.+... +.+.+. .+..+.++||+|+..|+.++++.|+..+++.+          .+
T Consensus        34 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~  101 (179)
T 3f6q_A           34 QGDDHGFSPLHWACREGRSAVVEMLIMR-GARINV-MNRGDDTPLHLAASHGHRDIVQKLLQYKADIN----------AV  101 (179)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CC
T ss_pred             ccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------cc
Confidence            4467788899999988876554433322 222222 33467899999999999999999999885443          57


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCc
Q psy15728         88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        88 d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                      |..|.||||+|+..++.+++++|++.|++++.+|..|+|||++|+..++.
T Consensus       102 d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~  151 (179)
T 3f6q_A          102 NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRE  151 (179)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999876543

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.71  E-value=1.2e-17  Score=123.95  Aligned_cols=84  Identities=19%  Similarity=0.261  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHH---cCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCC
Q psy15728         45 VKEIHELFLYNCR---NGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVN  121 (139)
Q Consensus        45 ~~~~~~~l~~a~~---~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  121 (139)
                      +..+.|+||+|+.   .|+.++++.||..|++++          .+|..|+||||+|+..|+.+++++|+++||+++.+|
T Consensus       168 ~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn----------~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d  237 (497)
T 3lvq_E          168 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD----------AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVN  237 (497)
T ss_dssp             CCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTT----------CCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCC
T ss_pred             ccccchHHHHHHHhcccccHHHHHHHHHcCCCCC----------ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            4467899999966   999999999999986544          578899999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHhCCcc
Q psy15728        122 DAGDTPLHKAAFVGREV  138 (139)
Q Consensus       122 ~~g~tpl~~A~~~g~~~  138 (139)
                      ..|+||||+|+..|+.+
T Consensus       238 ~~g~tpl~~A~~~~~~~  254 (497)
T 3lvq_E          238 EAGETALDIARKKHHKE  254 (497)
T ss_dssp             TTCCCHHHHHHHTTCHH
T ss_pred             CCCCCHHHHHHHcCCHH
Confidence            99999999999999865

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.71  E-value=2.8e-18  Score=117.83  Aligned_cols=117  Identities=14%  Similarity=0.051  Sum_probs=84.5

Q ss_pred             ccccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccC
Q psy15728          8 IKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESK   87 (139)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~   87 (139)
                      .++..|.+++|.++..+.....+.+. ..+.+.+......+.||||+|+..|+.++++.|+..+++++          .+
T Consensus       153 ~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~----------~~  221 (282)
T 1oy3_D          153 AENYDGHTPLHVAVIHKDAEMVRLLR-DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT----------AR  221 (282)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CC
T ss_pred             CcCCCCcCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc----------cc
Confidence            34667889999999888765544333 33444555454568899999999999999999999985443          57


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhC
Q psy15728         88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG  135 (139)
Q Consensus        88 d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g  135 (139)
                      |..|.||||+|+..++.+++++|+++|++++.++..|.|||++|....
T Consensus       222 d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          222 MYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             CTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred             ccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence            889999999999999999999999999999999999999999997654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.71  E-value=6.9e-18  Score=113.07  Aligned_cols=80  Identities=25%  Similarity=0.310  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCc
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDT  126 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~t  126 (139)
                      .+.++||+|+..|+.++++.|+..+++.+          .+|..|.||||+|+..++.+++++|++.|++++.++..|.|
T Consensus        72 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  141 (231)
T 3aji_A           72 AGWSPLHIAASAGXDEIVKALLVKGAHVN----------AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDAT  141 (231)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCCHHHHHHHcCHHHHHHHHHHcCCCCC----------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCc
Confidence            34455555555555555555555442221          34455555555555555555555555555555555555555


Q ss_pred             HHHHHHHhCC
Q psy15728        127 PLHKAAFVGR  136 (139)
Q Consensus       127 pl~~A~~~g~  136 (139)
                      |||+|+..|+
T Consensus       142 ~L~~A~~~~~  151 (231)
T 3aji_A          142 AMHRAAAKGN  151 (231)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHcCC
Confidence            5555555554

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.71  E-value=4e-19  Score=118.90  Aligned_cols=115  Identities=22%  Similarity=0.250  Sum_probs=92.3

Q ss_pred             ccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHh-cccccccccccccCccCC
Q psy15728         10 FAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDH-CKENNVEINLSQKGESKS   88 (139)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~~~~~~~~d   88 (139)
                      ...+.+.+|.++..+.....+.+.. .+.+.+. .+..+.|+||+|+..|+.++++.|+.. +.+.+          .+|
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~----------~~d  137 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLD-NRVGVNG-LDKAGSTALYWACHGGHKDIVEMLFTQPNIELN----------QQN  137 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHH-TTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC----------CCC
T ss_pred             ccccccccccccccCcHHHHHHHHh-CCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc----------ccC
Confidence            3456788888888887655444432 2223332 345678999999999999999999987 63332          578


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCC
Q psy15728         89 NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR  136 (139)
Q Consensus        89 ~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~  136 (139)
                      ..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+
T Consensus       138 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  185 (222)
T 3ehr_A          138 KLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAAC  185 (222)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhH
Confidence            999999999999999999999999999999999999999999987654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.70  E-value=2.2e-18  Score=113.06  Aligned_cols=109  Identities=12%  Similarity=0.016  Sum_probs=80.0

Q ss_pred             CCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCH----HHHHHHHHhcccccccccccccCccCCC
Q psy15728         14 GNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQL----DKIKQLLDHCKENNVEINLSQKGESKSN   89 (139)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~----~~~~~ll~~~~~~~~~~~~~~~~~~~d~   89 (139)
                      ...++.+++.+.......   ......+...+..+.||||+|+..|+.    ++++.||..|++++          .+|.
T Consensus         7 ~~~l~~Aa~~g~~~~~~~---l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn----------~~d~   73 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLE---LFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK----------SRTK   73 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHH---HHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS----------CCCT
T ss_pred             ccHHHHHHHcCCHHHHHH---HHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC----------CCCC
Confidence            345677777766544222   222223333335678999999999875    48888998885554          5788


Q ss_pred             CCCcHHHHHHHhCC------HHHHHHHHhCCCCCCcCCCCCC-cHHHHHHHhC
Q psy15728         90 LGWTPLHLASYFGH------KSVVEFLLDQGVDINAVNDAGD-TPLHKAAFVG  135 (139)
Q Consensus        90 ~g~t~l~~a~~~~~------~~~~~~Ll~~ga~~~~~~~~g~-tpl~~A~~~g  135 (139)
                      .|+||||+|+..++      .+++++|++.||+++.+|..|+ ||||+|+..+
T Consensus        74 ~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~  126 (186)
T 3t8k_A           74 EGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYF  126 (186)
T ss_dssp             TCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCC
T ss_pred             CCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcC
Confidence            89999999998887      5788999999999999998898 8999888744

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.70  E-value=1.2e-17  Score=106.31  Aligned_cols=113  Identities=19%  Similarity=0.186  Sum_probs=88.9

Q ss_pred             CCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCC
Q psy15728         13 GGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGW   92 (139)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~   92 (139)
                      ..+.++.++..+..+..+.+... +.+.+ ..+..+.++||+|+. |+.++++.|+..+.+++          .+|..|.
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~----------~~~~~g~   71 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQN-NVNVN-AQNGFGRTALQVMKL-GNPEIARRLLLRGANPD----------LKDRTGF   71 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTS-CCCTT-CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT----------CCCTTSC
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhC-CCCcc-ccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC----------CCCCCCC
Confidence            34456667766665554444431 22222 234467899999999 99999999999875443          5788899


Q ss_pred             cHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        93 t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      ||||+|+..++.+++++|++.|++++.++..|+||||+|+..|+.+
T Consensus        72 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  117 (162)
T 1ihb_A           72 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR  117 (162)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            9999999999999999999999999999999999999999998754

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.70  E-value=4.5e-18  Score=120.13  Aligned_cols=127  Identities=22%  Similarity=0.121  Sum_probs=90.4

Q ss_pred             ccccCCCCcchhhhhhcc---CCCccCCCchhhHHhhhcCHHHHHHHHHHHHH----cCCHHHHHHHHHhcccc------
Q psy15728          8 IKFAPGGNRTHDQVRTRH---SSSEEETPNSLSAELNQLSVKEIHELFLYNCR----NGQLDKIKQLLDHCKEN------   74 (139)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~----~g~~~~~~~ll~~~~~~------   74 (139)
                      .++..|.+++|.++..+.   ......+........+ ..+..+.||||+|+.    .|+.++++.|++.+...      
T Consensus       159 ~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~-~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~  237 (327)
T 1sw6_A          159 YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI-LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQN  237 (327)
T ss_dssp             BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG-EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGG
T ss_pred             CcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcccc-CCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccc
Confidence            345667778888887655   3333333333322222 334567899999998    89999999998875311      


Q ss_pred             ----------ccccccc-------------------ccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCC
Q psy15728         75 ----------NVEINLS-------------------QKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGD  125 (139)
Q Consensus        75 ----------~~~~~~~-------------------~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~  125 (139)
                                +++++..                   ...+.+|..|+||||+|+..|+.+++++|++.||+++.+|..|+
T Consensus       238 ~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~  317 (327)
T 1sw6_A          238 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGL  317 (327)
T ss_dssp             CCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             hHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence                      0000000                   02447899999999999999999999999999999999999999


Q ss_pred             cHHHHHHHhC
Q psy15728        126 TPLHKAAFVG  135 (139)
Q Consensus       126 tpl~~A~~~g  135 (139)
                      ||||+|+..|
T Consensus       318 TpL~~A~~~g  327 (327)
T 1sw6_A          318 RPVDFGAGLE  327 (327)
T ss_dssp             CGGGGTCC--
T ss_pred             CHHHHHHhcC
Confidence            9999998765

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.70  E-value=7.1e-17  Score=111.88  Aligned_cols=84  Identities=30%  Similarity=0.428  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCC
Q psy15728         45 VKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAG  124 (139)
Q Consensus        45 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g  124 (139)
                      ...+.++||.|+..|+.++++.|+..+++++          ..|..|.||||+|+..|+.+++++|++.|++++.++..|
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~----------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g  106 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADIN----------YANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG  106 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTT----------CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCCc----------ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence            3466899999999999999999999885443          568889999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhCCcc
Q psy15728        125 DTPLHKAAFVGREV  138 (139)
Q Consensus       125 ~tpl~~A~~~g~~~  138 (139)
                      +||||+|+..|+.+
T Consensus       107 ~tpL~~A~~~g~~~  120 (299)
T 1s70_B          107 WIPLHAAASCGYLD  120 (299)
T ss_dssp             CCHHHHHHHHTCHH
T ss_pred             CcHHHHHHHcCCHH
Confidence            99999999998754

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.70  E-value=9.7e-18  Score=112.81  Aligned_cols=81  Identities=22%  Similarity=0.263  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCC-CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCC
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKS-NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGD  125 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d-~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~  125 (139)
                      .+.++||+|+..|+.++++.|+..+.+.+          ..+ ..|.||||+|+..++.+++++|++.|++++.++..|+
T Consensus       115 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  184 (241)
T 1k1a_A          115 DGLTALHVAVNTECQETVQLLLERGADID----------AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS  184 (241)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCcc----------cccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            34555666666666666666655553222          234 5577777777777777777777777777777777777


Q ss_pred             cHHHHHHHhCCc
Q psy15728        126 TPLHKAAFVGRE  137 (139)
Q Consensus       126 tpl~~A~~~g~~  137 (139)
                      ||||+|+..|+.
T Consensus       185 t~L~~A~~~~~~  196 (241)
T 1k1a_A          185 SALHSASGRGLL  196 (241)
T ss_dssp             BHHHHHHHHTCH
T ss_pred             CHHHHHHHcCCH
Confidence            777777776654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.70  E-value=1.1e-17  Score=112.42  Aligned_cols=80  Identities=31%  Similarity=0.388  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCc
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDT  126 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~t  126 (139)
                      .+.++||+|+..|+.++++.|+..+++.+          .+|..|.||||+|+..++.+++++|++.|++++.+|..|.|
T Consensus       110 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~----------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  179 (237)
T 3b7b_A          110 GGWTPMIWATEYKHVDLVKLLLSKGSDIN----------IRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDS  179 (237)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCC----------ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence            34455555555555555555555543222          34444555555555555555555555555555555555555


Q ss_pred             HHHHHHHhCC
Q psy15728        127 PLHKAAFVGR  136 (139)
Q Consensus       127 pl~~A~~~g~  136 (139)
                      |||+|+..|+
T Consensus       180 ~L~~A~~~~~  189 (237)
T 3b7b_A          180 PLHIAARENR  189 (237)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHhCC
Confidence            5555555544

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.69  E-value=7.9e-17  Score=102.96  Aligned_cols=86  Identities=30%  Similarity=0.458  Sum_probs=74.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCC
Q psy15728         44 SVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDA  123 (139)
Q Consensus        44 ~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~  123 (139)
                      ....+.++||.|+..|+.+.++.|+..+.     .+..    ..+..|.||||+|+..++.+++++|++.|++++.++..
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~-----~~~~----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~   74 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQS-----VNCR----DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG   74 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTT-----TTCC----CTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCC-----CCcc----ccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCC
Confidence            45578999999999999999999997653     2222    56788999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHhCCcc
Q psy15728        124 GDTPLHKAAFVGREV  138 (139)
Q Consensus       124 g~tpl~~A~~~g~~~  138 (139)
                      |+||||+|+..|+.+
T Consensus        75 g~t~L~~A~~~~~~~   89 (165)
T 3twr_A           75 GLVPLHNACSYGHYE   89 (165)
T ss_dssp             SCCHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHcCcHH
Confidence            999999999998764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.69  E-value=7.2e-18  Score=107.20  Aligned_cols=83  Identities=24%  Similarity=0.391  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCC
Q psy15728         45 VKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAG  124 (139)
Q Consensus        45 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g  124 (139)
                      ...+.++||+|+..|+.++++.|+..+.+.+          .+|..|.||||+|+ .++.+++++|++.|++++.++..|
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g   77 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGANPN----------APNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPAT   77 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTT----------CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTT
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCCCC----------CCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCC
Confidence            4456899999999999999999999875433          57888999999985 899999999999999999999999


Q ss_pred             Cc-HHHHHHHhCCcc
Q psy15728        125 DT-PLHKAAFVGREV  138 (139)
Q Consensus       125 ~t-pl~~A~~~g~~~  138 (139)
                      +| |||+|+..|+.+
T Consensus        78 ~ttpL~~A~~~~~~~   92 (156)
T 1bi7_B           78 LTRPVHDAAREGFLD   92 (156)
T ss_dssp             CCCHHHHHHHHTCHH
T ss_pred             CcHHHHHHHHCCCHH
Confidence            99 999999998864

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.69  E-value=4.3e-17  Score=117.03  Aligned_cols=83  Identities=23%  Similarity=0.336  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCC
Q psy15728         46 KEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGD  125 (139)
Q Consensus        46 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~  125 (139)
                      ..+.|+||+|+..|+.++++.||..+++++          ..|..|+||||+|+..++.+++++|++.|++++.+|..|.
T Consensus       233 ~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn----------~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~  302 (368)
T 3jue_A          233 QDNATPLIQATAANSLLACEFLLQNGANVN----------QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGR  302 (368)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHcCCCCC----------CCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCC
Confidence            456778888888888888888887764333          4677888888888888888888888888888888888888


Q ss_pred             cHHHHHHHhCCcc
Q psy15728        126 TPLHKAAFVGREV  138 (139)
Q Consensus       126 tpl~~A~~~g~~~  138 (139)
                      ||||+|+..|+..
T Consensus       303 TpL~~A~~~g~~~  315 (368)
T 3jue_A          303 DPLTIAMETANAD  315 (368)
T ss_dssp             CHHHHHHHTTCHH
T ss_pred             CHHHHHHHCCCHH
Confidence            8888888887754

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.69  E-value=1.8e-17  Score=110.96  Aligned_cols=116  Identities=20%  Similarity=0.155  Sum_probs=67.2

Q ss_pred             ccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCC
Q psy15728         10 FAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSN   89 (139)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~   89 (139)
                      +..+.+++|.++..+..+..+.+.. .+.+.+ ..+..+.++||+|+..|+.++++.|+..+.+.+          .+|.
T Consensus        70 ~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~----------~~~~  137 (231)
T 3aji_A           70 DDAGWSPLHIAASAGXDEIVKALLV-KGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD----------AKDH  137 (231)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCT
T ss_pred             CCCCCCHHHHHHHcCHHHHHHHHHH-cCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------CcCC
Confidence            4455566666666554433222211 111111 122345677777777777777777776664332          3455


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCc
Q psy15728         90 LGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        90 ~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                      .|.||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.
T Consensus       138 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  185 (231)
T 3aji_A          138 YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV  185 (231)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCH
Confidence            666666666666666666666666666666666666666666666654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.68  E-value=1.3e-18  Score=117.36  Aligned_cols=116  Identities=19%  Similarity=0.149  Sum_probs=92.1

Q ss_pred             ccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCC
Q psy15728         10 FAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSN   89 (139)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~   89 (139)
                      ...+.+.++.++..+..+..+.+.. .+.+.+. .+..+.|+||+|+..|+.++++.|+..+++++          .+|.
T Consensus        18 ~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n----------~~d~   85 (229)
T 2vge_A           18 RLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQ-PNEEGITALHNAICGANYSIVDFLITAGANVN----------SPDS   85 (229)
T ss_dssp             TSCHHHHHHHHHHHTCHHHHHHHHH-HSSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCT
T ss_pred             ccchhHHHHHHHHcCCHHHHHHHHh-cCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC----------CCCC
Confidence            3445556777888887666554443 2223322 44567899999999999999999999885443          5788


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCC-CCCCcHHHHH--HHhCCc
Q psy15728         90 LGWTPLHLASYFGHKSVVEFLLDQGVDINAVN-DAGDTPLHKA--AFVGRE  137 (139)
Q Consensus        90 ~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~-~~g~tpl~~A--~~~g~~  137 (139)
                      .|.||||+|+..|+.+++++|++.|++++.++ ..|+||||+|  +..|+.
T Consensus        86 ~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~  136 (229)
T 2vge_A           86 HGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYA  136 (229)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChH
Confidence            99999999999999999999999999999986 6999999999  776654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.68  E-value=1.4e-17  Score=109.33  Aligned_cols=117  Identities=23%  Similarity=0.277  Sum_probs=78.4

Q ss_pred             cccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCC
Q psy15728          9 KFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKS   88 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d   88 (139)
                      .+..|.+++|.++..+.....+.+... +.+.+. ....+.++||+|+..|+.++++.|+..++     .++    +..|
T Consensus        35 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~-----~~~----~~~~  103 (201)
T 3hra_A           35 VDTEGNTPLNIAVHNNDIEIAKALIDR-GADINL-QNSISDSPYLYAGAQGRTEILAYMLKHAT-----PDL----NKHN  103 (201)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSC-----CCT----TCCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhccC-----ccc----cccc
Confidence            345667777777776665443333321 222222 23445677777777777777777775442     111    2567


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCC-CCCCcCCCCCCcHHHHHHHhCC
Q psy15728         89 NLGWTPLHLASYFGHKSVVEFLLDQG-VDINAVNDAGDTPLHKAAFVGR  136 (139)
Q Consensus        89 ~~g~t~l~~a~~~~~~~~~~~Ll~~g-a~~~~~~~~g~tpl~~A~~~g~  136 (139)
                      ..|.||||+|+..++.+++++|++.| ++++.++..|+||||+|+..+.
T Consensus       104 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~  152 (201)
T 3hra_A          104 RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLRE  152 (201)
T ss_dssp             TTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSC
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhcc
Confidence            77888888888888888888888887 8888888888888888887765

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.68  E-value=1e-17  Score=120.15  Aligned_cols=82  Identities=22%  Similarity=0.304  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhc-ccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCC
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHC-KENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGD  125 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~-~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~  125 (139)
                      .+.++||+|+..|+.++++.|+..+ .+.+          .+|..|.||||+|+..|+.+++++|++.|++++.+|..|+
T Consensus       278 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n----------~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~  347 (373)
T 2fo1_E          278 KGRTALHYAAQVSNMPIVKYLVGEKGSNKD----------KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDH  347 (373)
T ss_dssp             CCCCTHHHHHSSCCHHHHHHHHHHSCCCTT----------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSC
T ss_pred             cCCCHHHHHHHhCCHHHHHHHHHhcCCCcc----------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCC
Confidence            5678899999999999999888775 3222          5788899999999999999999999999999999999999


Q ss_pred             cHHHHHHHhCCcc
Q psy15728        126 TPLHKAAFVGREV  138 (139)
Q Consensus       126 tpl~~A~~~g~~~  138 (139)
                      ||||+|+..|+.+
T Consensus       348 t~l~~A~~~g~~~  360 (373)
T 2fo1_E          348 TARQLAQANNHHN  360 (373)
T ss_dssp             CHHHHHHHTTCHH
T ss_pred             CHHHHHHHcCCHH
Confidence            9999999998864

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.68  E-value=1.5e-17  Score=120.99  Aligned_cols=82  Identities=33%  Similarity=0.490  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCC
Q psy15728         46 KEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGD  125 (139)
Q Consensus        46 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~  125 (139)
                      ..+.|+||+|+..|+.++++.|+..+++++          .+|..|.||||+|+..++.+++++|++.|++++.+|..|+
T Consensus       309 ~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n----------~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~  378 (437)
T 1n11_A          309 RMGYTPLHVASHYGNIKLVKFLLQHQADVN----------AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGT  378 (437)
T ss_dssp             SSCCCHHHHHHHSSCSHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSC
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhcCCCCC----------CCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCC
Confidence            345677777777777777777777764333          4677788888888888888888888888888888888888


Q ss_pred             cHHHHHHHhCCc
Q psy15728        126 TPLHKAAFVGRE  137 (139)
Q Consensus       126 tpl~~A~~~g~~  137 (139)
                      |||++|+..|+.
T Consensus       379 t~l~~A~~~g~~  390 (437)
T 1n11_A          379 TPLAIAKRLGYI  390 (437)
T ss_dssp             CHHHHHHHTTCH
T ss_pred             CHHHHHHHcCcH
Confidence            888888877764

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.68  E-value=8.2e-18  Score=115.28  Aligned_cols=115  Identities=19%  Similarity=0.203  Sum_probs=88.4

Q ss_pred             CCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCC
Q psy15728         13 GGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGW   92 (139)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~   92 (139)
                      |.+.++.+++.+..+..+.+.. .+.+.+......+.++||+|+..|+.++++.|+..+++++          .+|..|.
T Consensus         5 g~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------~~~~~g~   73 (285)
T 1wdy_A            5 DNHLLIKAVQNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV----------LRKKNGA   73 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTCC
T ss_pred             cchHHHHHHHcCCHHHHHHHHH-cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc----------ccCCCCC
Confidence            3445666666665544433332 2233444445567899999999999999999998875443          4678899


Q ss_pred             cHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        93 t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      ||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.+
T Consensus        74 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  119 (285)
T 1wdy_A           74 TPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK  119 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHH
Confidence            9999999999999999999999999999999999999999988753

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.67  E-value=1.4e-18  Score=114.02  Aligned_cols=116  Identities=13%  Similarity=0.070  Sum_probs=90.1

Q ss_pred             cCCCCcchhhhhhccCCC---ccCCCchhhHHhhhcCHHHHHHHHHHHHHcCC------HHHHHHHHHhccccccccccc
Q psy15728         11 APGGNRTHDQVRTRHSSS---EEETPNSLSAELNQLSVKEIHELFLYNCRNGQ------LDKIKQLLDHCKENNVEINLS   81 (139)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~------~~~~~~ll~~~~~~~~~~~~~   81 (139)
                      ..|.+++|.++..+....   ..+.....+.+++... ..+.||||+|+..+.      .++++.|+..|++++      
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d-~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin------  108 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRT-KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT------  108 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCC-TTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS------
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC------
Confidence            568889999987664321   1222233444444433 678999999999886      678999999986554      


Q ss_pred             ccCccCCCCCC-cHHHHHHHhC-----CHHHHHHHHh-CCCCCCcCCCCCCcHHHHHHHhCCc
Q psy15728         82 QKGESKSNLGW-TPLHLASYFG-----HKSVVEFLLD-QGVDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        82 ~~~~~~d~~g~-t~l~~a~~~~-----~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                          .+|..|. ||||+|+..+     ..+++++|++ .|++++.+|..|+||||+|+..|+.
T Consensus       109 ----~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~  167 (186)
T 3t8k_A          109 ----ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP  167 (186)
T ss_dssp             ----SCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCH
T ss_pred             ----ccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCH
Confidence                5788899 9999999844     3568999999 9999999999999999999998875

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.67  E-value=1.1e-17  Score=121.61  Aligned_cols=119  Identities=28%  Similarity=0.293  Sum_probs=87.1

Q ss_pred             ccccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccC
Q psy15728          8 IKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESK   87 (139)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~   87 (139)
                      ..+..|.+++|.++..+..+..+.+... +.+.+ .....+.++||+|+..|+.++++.|+..+++.+          .+
T Consensus         9 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~-~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------~~   76 (437)
T 1n11_A            9 GGGESGLTPLHVASFMGHLPIVKNLLQR-GASPN-VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN----------AK   76 (437)
T ss_dssp             ------CCHHHHHHHHTCHHHHHHHHHT-TCCSC-CSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS----------CC
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC----------CC
Confidence            4467788899999988877665554432 22222 223456789999999999999999998875433          46


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        88 d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      |..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+
T Consensus        77 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~  127 (437)
T 1n11_A           77 AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE  127 (437)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHH
Confidence            778889999999999999999999889998888888899999988888753

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.67  E-value=1.2e-16  Score=107.49  Aligned_cols=121  Identities=17%  Similarity=0.075  Sum_probs=93.1

Q ss_pred             ccccCCCCcchhhhhhccCCCccCCCchhhHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCc
Q psy15728          8 IKFAPGGNRTHDQVRTRHSSSEEETPNSLSAEL--NQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGE   85 (139)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~   85 (139)
                      .++..|.+++|.++..+..+..+.+........  ....+..+.++||+|+..|+.++++.|+..+++.+          
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------   73 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM----------   73 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc----------
Confidence            346788899999999888766555554221111  12234567899999999999999999998875443          


Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCCC----CCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         86 SKSNLGWTPLHLASYFGHKSVVEFLLDQGV----DINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        86 ~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga----~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      ..|..|.||||+|+..++.+++++|++.++    +++..+..|.||||+|+..|+.+
T Consensus        74 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  130 (241)
T 1k1a_A           74 ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE  130 (241)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHH
Confidence            467889999999999999999999999887    88888999999999999988754

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.67  E-value=2.6e-17  Score=118.05  Aligned_cols=117  Identities=18%  Similarity=0.186  Sum_probs=90.4

Q ss_pred             ccccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHH--------Hhccccccccc
Q psy15728          8 IKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLL--------DHCKENNVEIN   79 (139)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll--------~~~~~~~~~~~   79 (139)
                      .++..+.+.+|.++..+. ...+.+..   ...+......+.|+||+|+..|+.++++.|+        ..+++.+    
T Consensus        89 ~~~~~g~t~L~~Aa~~~~-~~~~~L~~---~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn----  160 (373)
T 2fo1_E           89 EPEPESPIKLHTEAAGSY-AITEPITR---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN----  160 (373)
T ss_dssp             -----CCCHHHHHHHSSS-CCCSCCST---TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT----
T ss_pred             CCCCCCccHHHHHhcCCc-hHHHHhcc---ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCc----
Confidence            446778899999998554 33344332   3445545467899999999999998887776        4453222    


Q ss_pred             ccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         80 LSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        80 ~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                            .+|..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+
T Consensus       161 ------~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~  213 (373)
T 2fo1_E          161 ------AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFG  213 (373)
T ss_dssp             ------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHH
T ss_pred             ------CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHH
Confidence                  57889999999999999999999999999999999999999999999998753

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.66  E-value=7.5e-16  Score=105.49  Aligned_cols=84  Identities=32%  Similarity=0.482  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCC
Q psy15728         46 KEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGD  125 (139)
Q Consensus        46 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~  125 (139)
                      .++.++||+|+..|++++++.|+..+++.+.         ..+..|.||||+|+..|+.+++++|++.|++++.++..|.
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~---------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~   73 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNF---------QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGA   73 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTC---------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCccc---------ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence            4678999999999999999999998865442         2367799999999999999999999999999999999999


Q ss_pred             cHHHHHHHhCCcc
Q psy15728        126 TPLHKAAFVGREV  138 (139)
Q Consensus       126 tpl~~A~~~g~~~  138 (139)
                      ||||+|+..|+.+
T Consensus        74 t~L~~A~~~~~~~   86 (285)
T 1wdy_A           74 TPFLLAAIAGSVK   86 (285)
T ss_dssp             CHHHHHHHHTCHH
T ss_pred             CHHHHHHHcCCHH
Confidence            9999999998754

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.66  E-value=9.9e-17  Score=111.23  Aligned_cols=83  Identities=24%  Similarity=0.240  Sum_probs=74.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCC
Q psy15728         44 SVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDA  123 (139)
Q Consensus        44 ~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~  123 (139)
                      .+..+.|+||+|+..|+.++++.|+..+++++          ..  .|.||||+|+..|+.+++++|++.|++++.++..
T Consensus        27 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~   94 (285)
T 3kea_A           27 ADVHGHSASYYAIADNNVRLVCTLLNAGALKN----------LL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDK   94 (285)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGS----------CC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC----------CC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            44577899999999999999999999985443          23  3899999999999999999999999999999999


Q ss_pred             CCcHHHHHHHhCCcc
Q psy15728        124 GDTPLHKAAFVGREV  138 (139)
Q Consensus       124 g~tpl~~A~~~g~~~  138 (139)
                      |+||||+|+..|+.+
T Consensus        95 g~t~L~~A~~~g~~~  109 (285)
T 3kea_A           95 GNTALYYAVDSGNMQ  109 (285)
T ss_dssp             SCCHHHHHHHTTCHH
T ss_pred             CCcHHHHHHHcCCHH
Confidence            999999999999864

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.66  E-value=4.1e-17  Score=113.12  Aligned_cols=46  Identities=28%  Similarity=0.233  Sum_probs=21.4

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCC
Q psy15728         91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR  136 (139)
Q Consensus        91 g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~  136 (139)
                      |.||||+|+..++.+++++|++.|++++.++..|+||||+|+..|+
T Consensus       157 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~  202 (285)
T 3d9h_A          157 LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQ  202 (285)
T ss_dssp             TSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            4444444444444444444444444444444444444444444443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.65  E-value=1.5e-17  Score=118.48  Aligned_cols=127  Identities=17%  Similarity=0.126  Sum_probs=86.0

Q ss_pred             ccccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccc-------
Q psy15728          8 IKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINL-------   80 (139)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~-------   80 (139)
                      ..+..|.+++|.++..+..+..+.+....    .......+.++||+|+..|+.++++.|+..+...+.+.+.       
T Consensus        48 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  123 (364)
T 3ljn_A           48 IQNRFGCTALHLACKFGCVDTAKYLASVG----EVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDE  123 (364)
T ss_dssp             CCCTTCCCHHHHHHHHCCHHHHHHHHHHC----CCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCC
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHCC----CCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcch
Confidence            34556777777777776654433332211    1223345677888888888888888888774333322221       


Q ss_pred             ----cccCccCCCCCCcHHHHHHHhC--CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         81 ----SQKGESKSNLGWTPLHLASYFG--HKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        81 ----~~~~~~~d~~g~t~l~~a~~~~--~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                          ....+..|..|.||||+|+..|  +.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus       124 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~  187 (364)
T 3ljn_A          124 REVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNRE  187 (364)
T ss_dssp             CCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHH
Confidence                0001125677889999999999  899999999999999999999999999999888754

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.65  E-value=1.9e-17  Score=116.84  Aligned_cols=127  Identities=17%  Similarity=0.168  Sum_probs=98.7

Q ss_pred             cCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccc------------
Q psy15728         11 APGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEI------------   78 (139)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~------------   78 (139)
                      ..+.+.++.|++.+..+..+.+. ..+.+++......+.||||+|+..|+.++++.||.+++.++..-            
T Consensus        23 ~~~~t~L~~Av~~g~~~~V~~LL-~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~  101 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI  101 (337)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCChHHHHHHHcCCHHHHHHHH-HCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Confidence            34556788888888876655544 34556665556667899999999999999999999987665310            


Q ss_pred             -----------cccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcC----------CCCCCcHHHHHHHhCCc
Q psy15728         79 -----------NLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAV----------NDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        79 -----------~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~----------~~~g~tpl~~A~~~g~~  137 (139)
                                 ......+..|..|.||+|+|+..++.+++++|++.|++++..          +..|.||||+|+..|+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~  181 (337)
T 4g8k_A          102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  181 (337)
T ss_dssp             HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred             cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Confidence                       111223467899999999999999999999999999998764          45689999999999986


Q ss_pred             c
Q psy15728        138 V  138 (139)
Q Consensus       138 ~  138 (139)
                      +
T Consensus       182 ~  182 (337)
T 4g8k_A          182 E  182 (337)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.64  E-value=3e-16  Score=105.44  Aligned_cols=120  Identities=23%  Similarity=0.308  Sum_probs=96.4

Q ss_pred             CccccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCcc
Q psy15728          7 RIKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGES   86 (139)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~   86 (139)
                      ..++..|.+++|.++..+..+..+.+... +.+.+. ....+.++||+|+..|+.++++.|+..++..+          .
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~   72 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDT-CSEDQRTPLMEAAENNHLEAVKYLIKAGALVD----------P   72 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHT-TCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC----------C
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHc-CCCcCc-cCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC----------C
Confidence            34567889999999999887665444332 233333 34567899999999999999999998875433          5


Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCC-CCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         87 KSNLGWTPLHLASYFGHKSVVEFLLDQG-VDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        87 ~d~~g~t~l~~a~~~~~~~~~~~Ll~~g-a~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      ++..|.||||+|+..++.+++++|++.| ++++..+..|.||||+|+..|+.+
T Consensus        73 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~  125 (237)
T 3b7b_A           73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVD  125 (237)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHH
Confidence            6888999999999999999999999998 899999999999999999988753

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.63  E-value=3.3e-15  Score=105.36  Aligned_cols=87  Identities=30%  Similarity=0.425  Sum_probs=69.4

Q ss_pred             hhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCC-CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc
Q psy15728         41 NQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKS-NLGWTPLHLASYFGHKSVVEFLLDQGVDINA  119 (139)
Q Consensus        41 ~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d-~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~  119 (139)
                      ......++.++||.|+..|++++|+.||+.|++++          .++ ..|+||||+|+..|+.+++++|+++|++++.
T Consensus        18 ~~~~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn----------~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~   87 (337)
T 4g8k_A           18 GRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVN----------FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL   87 (337)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTT----------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCC----------ccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhh
Confidence            34455678999999999999999999999986554          344 4589999999999999999999999987654


Q ss_pred             ---------------------------------CCCCCCcHHHHHHHhCCc
Q psy15728        120 ---------------------------------VNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus       120 ---------------------------------~~~~g~tpl~~A~~~g~~  137 (139)
                                                       +|..|+||||+|+..|+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~  138 (337)
T 4g8k_A           88 RKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV  138 (337)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCH
T ss_pred             hccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcH
Confidence                                             455667777777777664

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.62  E-value=1.4e-15  Score=109.20  Aligned_cols=83  Identities=27%  Similarity=0.343  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHhcccccccccccccCccCC--CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCC
Q psy15728         46 KEIHELFLYNCRN-GQLDKIKQLLDHCKENNVEINLSQKGESKS--NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVND  122 (139)
Q Consensus        46 ~~~~~~l~~a~~~-g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d--~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~  122 (139)
                      ....++||+|+.. |++++++.||..+++++          ..+  ..|.||||+|+..++.+++++|++.|++++.+|.
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn----------~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~  266 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVN----------WVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS  266 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTT----------CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCC----------ccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC
Confidence            3457899999999 99999999999886554          344  7799999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHhCCcc
Q psy15728        123 AGDTPLHKAAFVGREV  138 (139)
Q Consensus       123 ~g~tpl~~A~~~g~~~  138 (139)
                      .|+||||+|+..|+.+
T Consensus       267 ~G~TpLh~A~~~g~~~  282 (368)
T 3jue_A          267 AGRGPLHHATILGHTG  282 (368)
T ss_dssp             TSCCHHHHHHHHTCHH
T ss_pred             CCCCHHHHHHHcCcHH
Confidence            9999999999999864

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.62  E-value=3.6e-16  Score=104.71  Aligned_cols=116  Identities=23%  Similarity=0.284  Sum_probs=76.0

Q ss_pred             ccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCC
Q psy15728         10 FAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSN   89 (139)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~   89 (139)
                      +..+.+.++.++..+.....+.+.. .+..........+.++||+|+..|+.++++.|+..+++.+          ..+.
T Consensus        39 ~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~~  107 (240)
T 3eu9_A           39 DKENVTLLHWAAINNRIDLVKYYIS-KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS----------LIDG  107 (240)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCT
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHH-cCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCc----------ccCC
Confidence            4556667777776665544333322 1222233333345677777777777777777777664332          4566


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCC
Q psy15728         90 LGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR  136 (139)
Q Consensus        90 ~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~  136 (139)
                      .|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..++
T Consensus       108 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~  154 (240)
T 3eu9_A          108 EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH  154 (240)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             CCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC
Confidence            77788888888888888888888888888778788888888776554

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.62  E-value=1.7e-15  Score=106.64  Aligned_cols=88  Identities=30%  Similarity=0.439  Sum_probs=76.8

Q ss_pred             hcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCC
Q psy15728         42 QLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVN  121 (139)
Q Consensus        42 ~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  121 (139)
                      ......+.++||.|+..|+.+.++.++....     .+++    ..|..|.||||+|+..|+.+++++|++.|++++.++
T Consensus        18 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~-----~~~~----~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~   88 (351)
T 3utm_A           18 VLTGEYKKDELLEAARSGNEEKLMALLTPLN-----VNCH----ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKD   88 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHCCTTT-----TTCC----CSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             eeeccccchhHHHHHHcCCHHHHHHHHHhcC-----CCcc----cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence            3345677899999999999999999987532     2222    678899999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHhCCcc
Q psy15728        122 DAGDTPLHKAAFVGREV  138 (139)
Q Consensus       122 ~~g~tpl~~A~~~g~~~  138 (139)
                      ..|+||||+|+..|+.+
T Consensus        89 ~~g~t~L~~A~~~g~~~  105 (351)
T 3utm_A           89 KGGLVPLHNACSYGHYE  105 (351)
T ss_dssp             TTCCCHHHHHHHTTCHH
T ss_pred             CCCCcHHHHHHHCCCHH
Confidence            99999999999999864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.62  E-value=3.3e-15  Score=103.48  Aligned_cols=89  Identities=17%  Similarity=0.176  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHh---CCHHHHHHHHhCCCCCCcCCC
Q psy15728         46 KEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYF---GHKSVVEFLLDQGVDINAVND  122 (139)
Q Consensus        46 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~---~~~~~~~~Ll~~ga~~~~~~~  122 (139)
                      ....++|+.|+..|+.+.+..++..+.+.+....+    +..|..|.||||+|+..   ++.+++++|++.|++++.+|.
T Consensus       128 ~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l----~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~  203 (278)
T 1dcq_A          128 AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPL----ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG  203 (278)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCC----SSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT
T ss_pred             chhhhhhhhHhhhcccHHHHHHHHhhcchhhhccc----cccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCC
Confidence            34568999999999999999999988655432112    25688899999999999   899999999999999999999


Q ss_pred             CCCcHHHHHHHhCCcc
Q psy15728        123 AGDTPLHKAAFVGREV  138 (139)
Q Consensus       123 ~g~tpl~~A~~~g~~~  138 (139)
                      .|+||||+|+..|+.+
T Consensus       204 ~g~TpLh~A~~~g~~~  219 (278)
T 1dcq_A          204 KGSTALHYCCLTDNAE  219 (278)
T ss_dssp             TCCCHHHHHHHTTCHH
T ss_pred             CCCCHHHHHHHcCCHH
Confidence            9999999999999864

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.61  E-value=1.3e-15  Score=113.12  Aligned_cols=86  Identities=19%  Similarity=0.199  Sum_probs=74.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHH---hCCHHHHHHHHhCCCCCCcCCCCCC
Q psy15728         49 HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASY---FGHKSVVEFLLDQGVDINAVNDAGD  125 (139)
Q Consensus        49 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~---~~~~~~~~~Ll~~ga~~~~~~~~g~  125 (139)
                      .+.||.|+..|+++.++.||..+++++......    ..|..|.||||+|+.   .|+.+++++|++.|++++.+|..|+
T Consensus       133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~----~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~  208 (497)
T 3lvq_E          133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGP----DAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN  208 (497)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCS----SSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSC
T ss_pred             HHHHHHHHhccCHHHHHHHHhhcccccCCCCCc----ccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCC
Confidence            467999999999999999999997665422211    347889999999966   8999999999999999999999999


Q ss_pred             cHHHHHHHhCCcc
Q psy15728        126 TPLHKAAFVGREV  138 (139)
Q Consensus       126 tpl~~A~~~g~~~  138 (139)
                      ||||+|+..|+.+
T Consensus       209 TpLh~A~~~g~~~  221 (497)
T 3lvq_E          209 TALHYAALYNQPD  221 (497)
T ss_dssp             CHHHHHTTTTCHH
T ss_pred             cHHHHHHHcCCHH
Confidence            9999999999865

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.60  E-value=5.1e-16  Score=107.57  Aligned_cols=114  Identities=25%  Similarity=0.364  Sum_probs=90.4

Q ss_pred             cCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCC
Q psy15728         11 APGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNL   90 (139)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~   90 (139)
                      ..+.+.++.++..+..+....+.. .+.+.+. .+..+.|+||+|+..|+.++++.|+..+++++          .+|..
T Consensus        38 ~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~----------~~~~~  105 (299)
T 1s70_B           38 FDDGAVFLAACSSGDTEEVLRLLE-RGADINY-ANVDGLTALHQACIDDNVDMVKFLVENGANIN----------QPDNE  105 (299)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHH-HCCCTTC-BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTT
T ss_pred             cCCccHHHHHHHcCCHHHHHHHHH-cCCCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC----------CCCCC
Confidence            344566788887777665544432 2222322 23457899999999999999999999885443          57888


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCC
Q psy15728         91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR  136 (139)
Q Consensus        91 g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~  136 (139)
                      |.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+
T Consensus       106 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  151 (299)
T 1s70_B          106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAM  151 (299)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcch
Confidence            9999999999999999999999999999999999999999976654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.60  E-value=4e-16  Score=104.50  Aligned_cols=118  Identities=22%  Similarity=0.207  Sum_probs=92.6

Q ss_pred             ccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCC
Q psy15728         10 FAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSN   89 (139)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~   89 (139)
                      +..+.+.++.++..+.....+.+... +.+.+. ....+.++||+|+..|+.++++.|+..++..+.         ..+.
T Consensus         6 d~~~~~~l~~A~~~g~~~~~~~Ll~~-g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~---------~~~~   74 (240)
T 3eu9_A            6 DDYSTWDIVKATQYGIYERCRELVEA-GYDVRQ-PDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ---------LGGD   74 (240)
T ss_dssp             SCGGGCCHHHHHHTTCHHHHHHHHHT-TCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC---------CBTT
T ss_pred             ccccchHHHHHHHcCChHHHHHHHHc-CCCcCC-CCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchh---------hcCC
Confidence            34556678888887776655444332 222222 335678999999999999999999998864432         2345


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         90 LGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        90 ~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      .|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.+
T Consensus        75 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  123 (240)
T 3eu9_A           75 LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS  123 (240)
T ss_dssp             TTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             cCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHH
Confidence            5899999999999999999999999999999999999999999998754

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.58  E-value=5.1e-15  Score=103.59  Aligned_cols=87  Identities=18%  Similarity=0.197  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHh---CCHHHHHHHHhCCCCCCcCCCCC
Q psy15728         48 IHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYF---GHKSVVEFLLDQGVDINAVNDAG  124 (139)
Q Consensus        48 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~---~~~~~~~~Ll~~ga~~~~~~~~g  124 (139)
                      ..++|+.|+..|+++.++.|+..+++++......    ..+..|.||||+|+..   ++.+++++|++.|++++.+|..|
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~----~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G  226 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGP----DAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG  226 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECS----SSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCc----ccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCC
Confidence            3578999999999999999998886554311100    1578899999999997   89999999999999999999999


Q ss_pred             CcHHHHHHHhCCcc
Q psy15728        125 DTPLHKAAFVGREV  138 (139)
Q Consensus       125 ~tpl~~A~~~g~~~  138 (139)
                      +||||+|+..|+.+
T Consensus       227 ~TpLh~A~~~g~~~  240 (301)
T 2b0o_E          227 NTALHYAALYNQPD  240 (301)
T ss_dssp             CCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHcCCHH
Confidence            99999999999864

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.56  E-value=1.2e-16  Score=96.56  Aligned_cols=109  Identities=26%  Similarity=0.362  Sum_probs=85.3

Q ss_pred             cccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCC
Q psy15728          9 KFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKS   88 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d   88 (139)
                      ++..|.+.+|.++..+..+..+.+... +.+.+. .+..+.++||+|+..|+.++++.|+..+++.+          .+|
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~-~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~----------~~d   72 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNA-RSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN----------ARS   72 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSC-CCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT----------CCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc----------ccC
Confidence            467888999999988876554444332 222222 33567899999999999999999998875443          578


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHH
Q psy15728         89 NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLH  129 (139)
Q Consensus        89 ~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~  129 (139)
                      ..|.||||+|+..++.+++++|++.|++++.++..|.+|-.
T Consensus        73 ~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~~  113 (115)
T 2l6b_A           73 KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH  113 (115)
T ss_dssp             TTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC----
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccccc
Confidence            88999999999999999999999999999999999998853

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.56  E-value=3.8e-16  Score=110.22  Aligned_cols=80  Identities=19%  Similarity=0.098  Sum_probs=68.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCC---HHHHHHHHhCC-CCCCc
Q psy15728         44 SVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGH---KSVVEFLLDQG-VDINA  119 (139)
Q Consensus        44 ~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~---~~~~~~Ll~~g-a~~~~  119 (139)
                      .+..+.||||+|+..|+.++++.||..+++++          .+|..|+||||+|+..|+   .++++.|++.+ ++++.
T Consensus       127 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n----------~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~  196 (327)
T 1sw6_A          127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRL----------YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL  196 (327)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC----------CcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccC
Confidence            45678899999999999999999999885444          578889999999999988   67777777775 78999


Q ss_pred             CCCCCCcHHHHHHH
Q psy15728        120 VNDAGDTPLHKAAF  133 (139)
Q Consensus       120 ~~~~g~tpl~~A~~  133 (139)
                      +|..|+||||+|+.
T Consensus       197 ~d~~g~tpLh~A~~  210 (327)
T 1sw6_A          197 EDSMNRTILHHIII  210 (327)
T ss_dssp             ECTTCCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHH
Confidence            99999999999998

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.55  E-value=5.6e-17  Score=116.77  Aligned_cols=119  Identities=16%  Similarity=0.133  Sum_probs=87.3

Q ss_pred             CCCCcchhhhhhccCCCccCCCchhhHH-hhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCC
Q psy15728         12 PGGNRTHDQVRTRHSSSEEETPNSLSAE-LNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNL   90 (139)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~   90 (139)
                      .+.+++|.+++.+..+..+.+.....+. ........+.+|||+|+..|+.++++.|+..+++... .+++    ..+  
T Consensus        91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~-~~i~----~~~--  163 (376)
T 2aja_A           91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM-AMIQ----AEN--  163 (376)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHH-HHHS----HHH--
T ss_pred             CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-cccC----CCC--
Confidence            3446788888888776655554432211 0012234567899999999999999999998853211 1111    112  


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhCCCCCCc--CCCCCCcHHHHHH-HhCCcc
Q psy15728         91 GWTPLHLASYFGHKSVVEFLLDQGVDINA--VNDAGDTPLHKAA-FVGREV  138 (139)
Q Consensus        91 g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~--~~~~g~tpl~~A~-~~g~~~  138 (139)
                       .||||+|+..|+.+++++|++.|++++.  .|..|.||||+|+ ..|+.+
T Consensus       164 -~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~e  213 (376)
T 2aja_A          164 -YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN  213 (376)
T ss_dssp             -HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred             -CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHH
Confidence             8999999999999999999999999887  8889999999999 999865

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.50  E-value=6.1e-15  Score=85.86  Aligned_cols=92  Identities=33%  Similarity=0.418  Sum_probs=70.6

Q ss_pred             CCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCC
Q psy15728         13 GGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGW   92 (139)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~   92 (139)
                      |.+++|.++..+..+..+.+.. .+.+.+. .+..+.||||+|+..|+.++++.|+..+++++          .+|..|.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------~~d~~g~   69 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLE-AGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN----------AKDKNGR   69 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHH-TTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHH-cCCCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------ccCCCCC
Confidence            5677888887776554433332 2222222 34567899999999999999999999885443          5788999


Q ss_pred             cHHHHHHHhCCHHHHHHHHhCCCC
Q psy15728         93 TPLHLASYFGHKSVVEFLLDQGVD  116 (139)
Q Consensus        93 t~l~~a~~~~~~~~~~~Ll~~ga~  116 (139)
                      ||||+|+..++.+++++|++.||+
T Consensus        70 t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           70 TPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999985

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.35  E-value=1.4e-13  Score=99.06  Aligned_cols=84  Identities=13%  Similarity=0.067  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC---CcCCCC
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDI---NAVNDA  123 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~---~~~~~~  123 (139)
                      ...|+||+|+..|+.++++.|+..++....       ....+..|.||||+|+..|+.+++++|++.|+++   +..+.+
T Consensus        91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~-------~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~  163 (376)
T 2aja_A           91 KSEVICFVAAITGCSSALDTLCLLLTSDEI-------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN  163 (376)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSS-------CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH
T ss_pred             CcCCHHHHHHHcCCHHHHHHHHHcCCcHHH-------HHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC
Confidence            346999999999999999999988752211       0023445789999999999999999999999862   332333


Q ss_pred             CCcHHHHHHHhCCcc
Q psy15728        124 GDTPLHKAAFVGREV  138 (139)
Q Consensus       124 g~tpl~~A~~~g~~~  138 (139)
                       .||||+|+..|+.+
T Consensus       164 -~TpLh~Aa~~G~~e  177 (376)
T 2aja_A          164 -YHAFRLAAENGHLH  177 (376)
T ss_dssp             -HHHHHHHHHTTCHH
T ss_pred             -CCHHHHHHHCCCHH
Confidence             99999999999865

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.27  E-value=3.5e-12  Score=76.33  Aligned_cols=53  Identities=30%  Similarity=0.308  Sum_probs=47.8

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         86 SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        86 ~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      ..|..|.|+||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+..
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~   71 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLE   71 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH
Confidence            46788999999999999999999999999999999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-09
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-09
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.003
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.001
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	8e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	5e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.002
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (182), Expect = 2e-17
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 10/82 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G L  +K LL          N        +    TPLH+A+  GH  V ++LL    
Sbjct: 8   SFMGHLPIVKNLLQR----GASPN------VSNVKVETPLHMAARAGHTEVAKYLLQNKA 57

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
            +NA      TPLH AA +G  
Sbjct: 58  KVNAKAKDDQTPLHCAARIGHT 79

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 2e-14
 Identities = 21/53 (39%), Positives = 29/53 (54%)

Query: 85  ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
            +K+ LG++PLH A+  GH  +V  LL  G   N V+  G TPL  A  +G  
Sbjct: 324 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI 376

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 2e-13
 Identities = 21/45 (46%), Positives = 27/45 (60%)

Query: 93  TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
           TPLH+AS+ GH  +V+ LL +G   N  N   +TPLH AA  G  
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT 46

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 4e-09
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            + G++   + LL+     N               G TPLH+A +  +  +V+ LL +G 
Sbjct: 140 AKYGKVRVAELLLERDAHPNA----------AGKNGLTPLHVAVHHNNLDIVKLLLPRGG 189

Query: 116 DINAVNDAGDTPLHKAAFVG 135
             ++    G TPLH AA   
Sbjct: 190 SPHSPAWNGYTPLHIAAKQN 209

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 7e-09
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 5/116 (4%)

Query: 27  SSEEETPNSLSAELNQLSVKEI-----HELFLYNCRNGQLDKIKQLLDHCKENNVEINLS 81
           + +++TP   +A +   ++ ++         L          I     H +     +   
Sbjct: 63  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 122

Query: 82  QKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
                 +  G+TPLH+A+ +G   V E LL++    NA    G TPLH A      
Sbjct: 123 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 178

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 4e-07
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 13/69 (18%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFL---LD 112
            + G  D +  LL +        N        S+ G TPL +A   G+ SV + L    D
Sbjct: 338 AQQGHTDIVTLLLKN----GASPNE------VSSDGTTPLAIAKRLGYISVTDVLKVVTD 387

Query: 113 QGVDINAVN 121
           +   +   +
Sbjct: 388 ETSFVLVSD 396

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 5e-07
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
                + G  + +  LL      N+           +  G TPLHL +  GH  V + L+
Sbjct: 235 LHLAAQEGHAEMVALLLSKQANGNL----------GNKSGLTPLHLVAQEGHVPVADVLI 284

Query: 112 DQGVDINAVNDAGDTPLHKAAFVGRE 137
             GV ++A    G TPLH A+  G  
Sbjct: 285 KHGVMVDATTRMGYTPLHVASHYGNI 310

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 2e-06
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
            R G  +  K LL +      ++N      +K+    TPLH A+  GH ++V+ LL+   
Sbjct: 41  ARAGHTEVAKYLLQN----KAKVN------AKAKDDQTPLHCAARIGHTNMVKLLLENNA 90

Query: 116 DINAVNDAGDTPLHKA 131
           + N    AG TPLH A
Sbjct: 91  NPNLATTAGHTPLHIA 106

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 8e-06
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 5/111 (4%)

Query: 32  TPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEIN--LSQKG---ES 86
           TP  L+A+     +  +      N   G    +  L    +E +V +   L + G   ++
Sbjct: 233 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA 292

Query: 87  KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
            + +G+TPLH+AS++G+  +V+FLL    D+NA    G +PLH+AA  G  
Sbjct: 293 TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 343

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 22/69 (31%), Positives = 32/69 (46%)

Query: 69  DHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
           +  +     +       ++S  G TPLHLA+  GH  +V  LL +  + N  N +G TPL
Sbjct: 209 NQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPL 268

Query: 129 HKAAFVGRE 137
           H  A  G  
Sbjct: 269 HLVAQEGHV 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 64.8 bits (156), Expect = 6e-14
 Identities = 15/51 (29%), Positives = 22/51 (43%)

Query: 87  KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
           +   G TP+ LA+  G   VV +L+ QG  + AV+    T    A      
Sbjct: 217 QDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHH 267

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 48.2 bits (113), Expect = 4e-08
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 8/51 (15%)

Query: 87  KSNLGWTPLHLASYFGHKSVVEFLLD--------QGVDINAVNDAGDTPLH 129
                 T LH  +        E L+          G D+NA++   +TPL 
Sbjct: 29  DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM 79

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.0 bits (102), Expect = 1e-06
 Identities = 7/56 (12%), Positives = 17/56 (30%), Gaps = 10/56 (17%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
            + G+++ +  L+         +              T   LA    H ++V+   
Sbjct: 229 AQEGRIEVVMYLIQQ----GASVEA------VDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.0 bits (97), Expect = 6e-06
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 93  TPLHLA-SYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
           +P+ L     G  ++ E +  + V+I        T LH  A    
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPRH-NRTVLHWIASNSS 45

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.7 bits (156), Expect = 7e-14
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 49  HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVE 108
            E    +    + D I + LD        +N      ++ + G T L++A+  G+ S+V+
Sbjct: 223 KESKPNDKNGERKDSILENLDLKWIIANMLN------AQDSNGDTCLNIAARLGNISIVD 276

Query: 109 FLLDQGVDINAVNDAGDTPLHKAA 132
            LLD G D    N +G  P+   A
Sbjct: 277 ALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.4 bits (119), Expect = 6e-09
 Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 34  NSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWT 93
           N+ S+  N        +    +  +   +      +     N+ ++           G T
Sbjct: 59  NNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVD---------EHGNT 109

Query: 94  PLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
           PLH  +   +  +V+ L+  G +    ++ G++ L KA
Sbjct: 110 PLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 147

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.3 bits (103), Expect = 9e-07
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 4/93 (4%)

Query: 48  IHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVV 107
           +H + + +   G     K  LD      V+   ++  +S +N   +  +  +     S++
Sbjct: 181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ-NRPIQSGTNEKESKPNDKNGERKDSIL 239

Query: 108 EFLLDQ---GVDINAVNDAGDTPLHKAAFVGRE 137
           E L  +      +NA +  GDT L+ AA +G  
Sbjct: 240 ENLDLKWIIANMLNAQDSNGDTCLNIAARLGNI 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 63.2 bits (152), Expect = 2e-13
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 10/79 (12%)

Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
                G  + +K L+    + N++             GWTPLH A+++G +     L++ 
Sbjct: 205 VAAAKGYTEVLKLLIQARYDVNIKDYD----------GWTPLHAAAHWGKEEACRILVEN 254

Query: 114 GVDINAVNDAGDTPLHKAA 132
             D+ AVN  G T    A 
Sbjct: 255 LCDMEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.0 bits (123), Expect = 2e-09
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 72  KENNVEINLSQKGESKSNL-GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHK 130
            E ++E  + ++ ++K           A   G    V  LL++G DIN  N  G T LH+
Sbjct: 20  SETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQ 79

Query: 131 AAFVGRE 137
           A      
Sbjct: 80  ACIDDNV 86

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.5 bits (106), Expect = 4e-07
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 87  KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
            +  G T LH+A+  G+  V++ L+    D+N  +  G TPLH AA  G+E
Sbjct: 195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKE 245

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.3 bits (90), Expect = 5e-05
 Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 11/102 (10%)

Query: 8   IKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQL 67
           +K A    + ++Q++ R   SE +    +          +   +FL  C +G  +++ +L
Sbjct: 1   MKMADAKQKRNEQLK-RWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRL 59

Query: 68  LDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEF 109
           L+       +IN        +  G T LH A    +  +V+F
Sbjct: 60  LER----GADIN------YANVDGLTALHQACIDDNVDMVKF 91

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (146), Expect = 1e-12
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVD---INAVNDAGDTPLHKAAFVGRE 137
           G T LHLA    H+  ++FLL        ++  ND G T LH AA +G  
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEA 58

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (119), Expect = 7e-09
 Identities = 19/46 (41%), Positives = 20/46 (43%)

Query: 92  WTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
            TPLHLA      SV+E LL  G D  A    G TPL  A      
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP 238

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (107), Expect = 2e-07
 Identities = 9/61 (14%), Positives = 15/61 (24%), Gaps = 10/61 (16%)

Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
                     ++ LL        +         +   G TPL  A    +  +   L   
Sbjct: 198 LAVEAQAASVLELLLKA----GADPTA------RMYGGRTPLGSALLRPNPILARLLRAH 247

Query: 114 G 114
           G
Sbjct: 248 G 248

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (87), Expect = 1e-04
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
             +     +  LL      +  ++L      +++LG T LHLA+  G  S VE L   G 
Sbjct: 17  VIHQHEPFLDFLLGFSA-GHEYLDL------QNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 116 DINAVNDAGDTPLHKAAFVG 135
            +      G T LH A  V 
Sbjct: 70  GVLVAERGGHTALHLACRVR 89

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 6e-12
 Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 29/113 (25%)

Query: 54  YNCRNGQLDKIKQLLDHCKEN-------------------------NVEINLSQKG---E 85
                G ++ +K LLD    +                          +   L   G    
Sbjct: 154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN 213

Query: 86  SKSNLGWTPLHLASYFGHKSVVEFLLDQ-GVDINAVNDAGDTPLHKAAFVGRE 137
            +   G TPL LA    H  +V+ LL+Q  ++IN  +  G T L  A  +  +
Sbjct: 214 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK 266

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 2e-11
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 9/68 (13%)

Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
                  L  +++LL+     ++EIN         + G T L LA     K + E L  +
Sbjct: 225 LAVEKKHLGLVQRLLEQ---EHIEIN------DTDSDGKTALLLAVELKLKKIAELLCKR 275

Query: 114 GVDINAVN 121
           G   +  +
Sbjct: 276 GASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 2e-09
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 93  TPLHLASYFGHKSVVEFLLDQGVDINAV-NDAGDTPLHKAAFVGRE 137
             L  A       +V+ LL+ G ++N    + G TPLH A  + RE
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE 52

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 1e-08
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-G 114
              G++  +K L       N+     +  E     G T L  A+  GH  V++ LLD+ G
Sbjct: 113 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 172

Query: 115 VDINAVNDAGDTPLH 129
            D+NA ++ G   L 
Sbjct: 173 ADVNACDNMGRNALI 187

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 5e-07
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 50  ELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEF 109
            L +   +N  +D ++QLL+        +N       +   GWTPLH A     + +VE 
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEG----GANVNFQ-----EEEGGWTPLHNAVQMSREDIVEL 57

Query: 110 LLDQGVDINAVNDAGDTPLHKAAFVG 135
           LL  G D       G TP   AA  G
Sbjct: 58  LLRHGADPVLRKKNGATPFLLAAIAG 83

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 57.2 bits (137), Expect = 4e-11
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 7/111 (6%)

Query: 30  EETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLL--DHCKENNVEINLSQKGESK 87
           +   ++    L  LS KE   +FL   +N  +++++QLL   +   N     L      K
Sbjct: 29  QHFISANELSLMTLSYKEAIHIFLPGTKN--MEQVRQLLCLYYAHYNRNAKQLWSDAHKK 86

Query: 88  SNLGWTPLHLASYFGHKSVVE---FLLDQGVDINAVNDAGDTPLHKAAFVG 135
                    +A+  G  S ++    LL     +  +          AA  G
Sbjct: 87  GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG 137

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 53.0 bits (126), Expect = 1e-09
 Identities = 13/116 (11%), Positives = 30/116 (25%), Gaps = 10/116 (8%)

Query: 20  QVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEIN 79
           Q+   + +        L ++ ++  +K    +       G    +   L     ++  + 
Sbjct: 63  QLLCLYYAHYNRNAKQLWSDAHKKGIKS-EVICFVAAITGCSSALD-TLCLLLTSDEIVK 120

Query: 80  LSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVN--DAGDTPLHKAAF 133
                       +    LA+  GH  V+  L +                    AA 
Sbjct: 121 ------VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAE 170

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.5 bits (104), Expect = 8e-07
 Identities = 10/91 (10%), Positives = 22/91 (24%), Gaps = 6/91 (6%)

Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
           F+    N   +          +   ++   +    +       L   +       + FLL
Sbjct: 241 FIARHVNRLKEMHDAFKLSNPDGVFDLVT-KSECLQGFYMLRNLIRRNDEVLLDDIRFLL 299

Query: 112 DQGVDINAVNDA-----GDTPLHKAAFVGRE 137
                      A      +  L  A  +G +
Sbjct: 300 SIPGIKALAPTATIPGDANELLRLALRLGNQ 330

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 42.6 bits (99), Expect = 4e-06
 Identities = 18/109 (16%), Positives = 31/109 (28%), Gaps = 7/109 (6%)

Query: 11  APGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDH 70
           A   NR  +       S+ +   + ++          +  L +       LD I+ LL  
Sbjct: 243 ARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNL-IRRNDEVLLDDIRFLLSI 301

Query: 71  CKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINA 119
                  I       +        L LA   G++     LL     + A
Sbjct: 302 PG-----IKALAPTATIPGDANELLRLALRLGNQGACALLLSIP-SVLA 344

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 39.5 bits (91), Expect = 5e-05
 Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 8/63 (12%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
             NG L  + +L +      +               +    LA+  GH  V+  L +   
Sbjct: 134 AENGHLHVLNRLCELAPTEIMA--------MIQAENYHAFRLAAENGHLHVLNRLCELAP 185

Query: 116 DIN 118
              
Sbjct: 186 TEA 188

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 7/81 (8%)

Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
           F     NG L  + +L +        +        ++   +     A   GH +V+ FLL
Sbjct: 165 FRLAAENGHLHVLNRLCELAPTEATAMI-------QAENYYAFRWAAVGRGHHNVINFLL 217

Query: 112 DQGVDINAVNDAGDTPLHKAA 132
           D  V +            K  
Sbjct: 218 DCPVMLAYAEIHEFEYGEKYV 238

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 6e-11
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQ----GVDINAVNDAGDTPLHKA 131
           G TPLH+A   G+   V  L++     G +++  N+   TPLH A
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 47

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 8e-11
 Identities = 16/46 (34%), Positives = 20/46 (43%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
           G + LH AS  G   +V  L+  G D +  N   DTPL  A     
Sbjct: 177 GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 4e-05
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 10/54 (18%)

Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVV 107
                G L  ++ L+        + +L      K+    TPL +A       ++
Sbjct: 183 SASGRGLLPLVRTLVRS----GADSSL------KNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 7e-05
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
              G L  + +L++  ++   E+++       +NL  TPLHLA      SVV  L+  G 
Sbjct: 11  VVQGNLPAVHRLVNLFQQGGRELDI------YNNLRQTPLHLAVITTLPSVVRLLVTAGA 64

Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
              A++  G T  H A      
Sbjct: 65  SPMALDRHGQTAAHLACEHRSP 86

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 3e-10
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 91  GWTPLHLASYFGHKS----VVEFLLDQGVDINAVNDAGDTPLHKA 131
           G + LHLA     K+    V+  +      +N  N+   TPLH A
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 1e-06
 Identities = 15/47 (31%), Positives = 19/47 (40%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
           G T LHLA    +  +V  LL  G D+N V   G +P          
Sbjct: 145 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPST 191

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 3e-05
 Identities = 4/30 (13%), Positives = 11/30 (36%)

Query: 87  KSNLGWTPLHLASYFGHKSVVEFLLDQGVD 116
            +  G++P  L        + + L    ++
Sbjct: 174 VTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 7e-10
 Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 1/46 (2%)

Query: 93  TPLHLASYFGHKSVVEFLLD-QGVDINAVNDAGDTPLHKAAFVGRE 137
            PLH A        V+ LL  +   +   +  G  PLH +      
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 4e-07
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 87  KSNLGWTPLHLASYFGHKSVVEFLLDQ-GVDINAVNDAGDTPLHKAA 132
           +   GWTPL  A   GH      L+++ G + + V++ G      A 
Sbjct: 168 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 214

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 4e-05
 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 9/59 (15%)

Query: 56  CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG 114
           C   +  K+++LL                  K   G  PLH +  F    +  FLL + 
Sbjct: 8   CMENEFFKVQELLHSKPSLL---------LQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 9e-05
 Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 12/63 (19%)

Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
           +    G  D    L++       E +L        N G     +A    ++ V +F L+ 
Sbjct: 178 HALAEGHGDAAVLLVEKY---GAEYDL------VDNKGAKAEDVAL---NEQVKKFFLNN 225

Query: 114 GVD 116
            VD
Sbjct: 226 VVD 228

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 3e-09
 Identities = 16/46 (34%), Positives = 19/46 (41%)

Query: 87  KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
           +   G TPLHLA         + L+ QG  I   N    TPL  A 
Sbjct: 165 QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 210

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 4e-09
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 85  ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLH 129
            + +  G TPLH A+      +   LL+ G + +A +    T +H
Sbjct: 97  NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMH 141

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 2e-05
 Identities = 25/122 (20%), Positives = 38/122 (31%), Gaps = 42/122 (34%)

Query: 49  HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFG------ 102
           + +      +G+L+++K+ +   K                    T LH A   G      
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLA---------TRTDQDSRTALHWACSAGHTEIVE 54

Query: 103 ---------------------------HKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
                                         +V+ LL +G  +NAVN  G TPLH AA   
Sbjct: 55  FLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN 114

Query: 136 RE 137
           R 
Sbjct: 115 RH 116

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 1e-04
 Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 11/67 (16%)

Query: 46  KEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKS 105
            E +      C   ++++ K L+         I +      ++    TPL +A   G   
Sbjct: 167 TEGNTPLHLACDEERVEEAKLLVSQ----GASIYI------ENKEEKTPLQVAKG-GLGL 215

Query: 106 VVEFLLD 112
           +++ +++
Sbjct: 216 ILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.003
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 10/86 (11%)

Query: 52  FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
             Y     + +    LL+     +           K +   T +H A+  G+  ++  LL
Sbjct: 107 LHYAASKNRHEIAVMLLEGGANPDA----------KDHYEATAMHRAAAKGNLKMIHILL 156

Query: 112 DQGVDINAVNDAGDTPLHKAAFVGRE 137
                 N  +  G+TPLH A    R 
Sbjct: 157 YYKASTNIQDTEGNTPLHLACDEERV 182

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.5 bits (111), Expect = 5e-08
 Identities = 11/46 (23%), Positives = 16/46 (34%)

Query: 92  WTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
            TPL LA+  G     + LLD   +    +     P   A+     
Sbjct: 157 ETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHH 202

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.2 bits (100), Expect = 2e-06
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 106 VVEFLLDQGVDINAVNDA-GDTPLHKAAFVGRE 137
           V+  LL QG ++NA  D  G+T LH AA   R 
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARA 36

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 3e-05
 Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 10/57 (17%)

Query: 54  YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFL 110
              R G  +  K LLD+         +        ++   P  +AS   H  +V  L
Sbjct: 162 LAAREGSYEASKALLDN----FANREI------TDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.7 bits (83), Expect = 3e-04
 Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 9/47 (19%)

Query: 64  IKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFL 110
           I  LL        E+N      +    G T LHLA+ F      + L
Sbjct: 5   ISDLLAQ----GAELN-----ATMDKTGETSLHLAARFARADAAKRL 42

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 2e-06
 Identities = 12/37 (32%), Positives = 16/37 (43%)

Query: 93  TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLH 129
             L  A+  G    +  LL   V++NA N  G T L 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ 39

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 2e-06
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 87  KSNLGWTPLHLASYFGHKSVVEFLLDQG 114
           +++ G T   LA  +G   VV  +   G
Sbjct: 129 RNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (92), Expect = 1e-05
 Identities = 19/126 (15%), Positives = 36/126 (28%), Gaps = 41/126 (32%)

Query: 48  IHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYF---GHK 104
           +H L     +   +  + Q       + V++       +      T LHLA         
Sbjct: 7   LHSLC-EAVKTRDIFGLLQAY----ADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 105 SVVEFLLDQGVDI---------------------------------NAVNDAGDTPLHKA 131
            +V+FL+    ++                                    N++G+TPL  A
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 132 AFVGRE 137
             +  E
Sbjct: 122 KRLKHE 127

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 4e-05
 Identities = 8/38 (21%), Positives = 12/38 (31%)

Query: 89  NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDT 126
             G TPL +A    H+   E L          +   + 
Sbjct: 112 ESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEY 149

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 3e-05
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 87  KSNLGWTPLHLASYFGHKSVVEFLLD 112
           +   G  P+ LA   GH+ V  +L  
Sbjct: 98  RDAWGRLPVDLAEELGHRDVARYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (77), Expect = 0.001
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINA 119
               L  A+  G    V  LL+ G + NA
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNA 31

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (90), Expect = 3e-05
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
             T LH A+   H+ VVE L+  G D++  +    T    +   G E
Sbjct: 100 KMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNE 146

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (90), Expect = 3e-05
 Identities = 6/29 (20%), Positives = 8/29 (27%)

Query: 93  TPLHLASYFGHKSVVEFLLDQGVDINAVN 121
             L  A+  G    V  L+  G       
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDW 32

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.9 bits (86), Expect = 8e-05
 Identities = 5/24 (20%), Positives = 11/24 (45%)

Query: 87  KSNLGWTPLHLASYFGHKSVVEFL 110
           +S    T   ++   G++ + E L
Sbjct: 129 QSKFCKTAFDISIDNGNEDLAEIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 5e-05
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 85  ESKSNLGWTPLHLASYFGHKSVVEFLLD 112
             +   G TPL LA   G + +V+ L  
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (76), Expect = 0.002
 Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 91  GWTPLHLASYFGHKSVVEFLLDQ-GVDINAVNDAGDTPLH 129
               L  A+  G    V  LL +  V  +A+N  G T L 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ 41

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (75), Expect = 0.003
 Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 24/106 (22%)

Query: 51  LFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNL-------------------- 90
           L L +   G+ D +++++    + ++  +        +                      
Sbjct: 4   LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 63

Query: 91  ---GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDA-GDTPLHKAA 132
              GWTPLH A+   +  V +FL++ G  + A+  +   T   K  
Sbjct: 64  DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.82
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.81
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.79
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.77
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.77
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.77
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.75
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.75
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.73
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.73
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.72
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.72
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.67
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.65
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.64
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.63
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.63
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.63
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.62
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.6
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.6
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.58
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.57
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.56
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.55
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.55
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.54
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.52
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.4
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.36
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.17
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.17
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.11

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=9e-21  Score=114.48  Aligned_cols=80  Identities=34%  Similarity=0.543  Sum_probs=72.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHH
Q psy15728         49 HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL  128 (139)
Q Consensus        49 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl  128 (139)
                      .|||++|++.|++++++.|++.+++++          .+|..|+||||+|+..++.+++++|++.|++++.+|..|+|||
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n----------~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpL   72 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVN----------RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL   72 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCC----------CCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccc----------cccccccccccccccccccccccccccccceeeecccccccch
Confidence            579999999999999999999885443          5788899999999999999999999999999999999999999


Q ss_pred             HHHHHhCCcc
Q psy15728        129 HKAAFVGREV  138 (139)
Q Consensus       129 ~~A~~~g~~~  138 (139)
                      |+|+..|+.+
T Consensus        73 h~A~~~~~~~   82 (118)
T d1myoa_          73 LSAVYEGHVS   82 (118)
T ss_dssp             HHHHTTTCCH
T ss_pred             hhhhhcCchh
Confidence            9999998864

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=3.4e-20  Score=116.83  Aligned_cols=83  Identities=20%  Similarity=0.297  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHH---cCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCC
Q psy15728         46 KEIHELFLYNCR---NGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVND  122 (139)
Q Consensus        46 ~~~~~~l~~a~~---~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~  122 (139)
                      ..+.|+||+|+.   .+..++++.|+..+++++          .+|..|+||||+|+..|+.+++++|++.|++++.+|.
T Consensus        43 ~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin----------~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~  112 (154)
T d1dcqa1          43 EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD----------KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANE  112 (154)
T ss_dssp             STTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT----------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCCchHHHHHHhcCCCCHHHHHHHHHcCCChh----------hhhhhhccccccccccccccccccccccCccccccCC
Confidence            356799999997   478899999999885443          5789999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHhCCcc
Q psy15728        123 AGDTPLHKAAFVGREV  138 (139)
Q Consensus       123 ~g~tpl~~A~~~g~~~  138 (139)
                      .|+||||+|+..|+.+
T Consensus       113 ~g~tpL~~A~~~~~~~  128 (154)
T d1dcqa1         113 SGETPLDIAKRLKHEH  128 (154)
T ss_dssp             TSCCHHHHHHHTTCHH
T ss_pred             CCCCHHHHHHHcCCHH
Confidence            9999999999999865

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.9e-20  Score=112.60  Aligned_cols=80  Identities=31%  Similarity=0.480  Sum_probs=72.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHH
Q psy15728         49 HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL  128 (139)
Q Consensus        49 ~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl  128 (139)
                      .+.|+.|+..|+.++++.|+..+++++          .+|..|+||||+|+..++.+++++|++.|++++.+|.+|+|||
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d~n----------~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpL   71 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDDPS----------LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL   71 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSCC----------CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCcc----------ccccccccccccccccccccccccccccccccccccccCcccc
Confidence            367999999999999999999885443          5788899999999999999999999999999999999999999


Q ss_pred             HHHHHhCCcc
Q psy15728        129 HKAAFVGREV  138 (139)
Q Consensus       129 ~~A~~~g~~~  138 (139)
                      |+|+..|+.+
T Consensus        72 h~A~~~g~~~   81 (130)
T d1ycsb1          72 HCAASCNNVQ   81 (130)
T ss_dssp             HHHHHTTCHH
T ss_pred             cccchhhHHH
Confidence            9999999864

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.79  E-value=2.9e-19  Score=120.82  Aligned_cols=127  Identities=17%  Similarity=0.178  Sum_probs=103.1

Q ss_pred             ccCCCCcchhhhhhccCCCccCCCchhh-------HHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccc
Q psy15728         10 FAPGGNRTHDQVRTRHSSSEEETPNSLS-------AELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQ   82 (139)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~   82 (139)
                      ...|.+++|.++..+..+..+.+.....       .+++. .+..+.||||+|+..|+.++++.||+.|++++.. +...
T Consensus        30 ~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~-~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~-~~~g  107 (277)
T d2fo1e1          30 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA-MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY-NKSE  107 (277)
T ss_dssp             CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTC
T ss_pred             CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccc-cCCCCCeeeccccccccccccccccccccccccc-cccc
Confidence            3468999999999998887776644322       12332 4568899999999999999999999998776531 1111


Q ss_pred             cC------------------------------------------------------------------------------
Q psy15728         83 KG------------------------------------------------------------------------------   84 (139)
Q Consensus        83 ~~------------------------------------------------------------------------------   84 (139)
                      ..                                                                              
T Consensus       108 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  187 (277)
T d2fo1e1         108 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG  187 (277)
T ss_dssp             CCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCC
T ss_pred             cccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCC
Confidence            11                                                                              


Q ss_pred             ---------------------------ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCc
Q psy15728         85 ---------------------------ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        85 ---------------------------~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                                                 +.+|..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.
T Consensus       188 ~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~  267 (277)
T d2fo1e1         188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHH  267 (277)
T ss_dssp             CCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCH
T ss_pred             CCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCH
Confidence                                       56789999999999999999999999999999999999999999999999985


Q ss_pred             c
Q psy15728        138 V  138 (139)
Q Consensus       138 ~  138 (139)
                      +
T Consensus       268 ~  268 (277)
T d2fo1e1         268 N  268 (277)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=1e-18  Score=108.99  Aligned_cols=121  Identities=17%  Similarity=0.193  Sum_probs=90.3

Q ss_pred             CcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhccccccc-----------------
Q psy15728         15 NRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVE-----------------   77 (139)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~-----------------   77 (139)
                      ++++.|++.+..+..+.+... ++...  .+..+.||||+|+..++.+.+..++.........                 
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~-ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMAN-GAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHH-TCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHc-CCCcc--cccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            456777777777665555432 33222  3556788888888888888887776654333211                 


Q ss_pred             ------ccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         78 ------INLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        78 ------~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                            .......+.+|..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus        81 ~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~e  147 (153)
T d1awcb_          81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNED  147 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             eeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHH
Confidence                  1111222578899999999999999999999999999999999999999999999999865

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=4.4e-19  Score=115.68  Aligned_cols=54  Identities=20%  Similarity=0.150  Sum_probs=51.0

Q ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        85 ~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      +..|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|++.|+.+
T Consensus       150 ~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~  203 (209)
T d1ot8a_         150 DAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHD  203 (209)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             cccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            567889999999999999999999999999999999999999999999999864

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1e-18  Score=106.26  Aligned_cols=115  Identities=17%  Similarity=0.110  Sum_probs=90.4

Q ss_pred             CCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCC
Q psy15728         12 PGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLG   91 (139)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g   91 (139)
                      ++.+.+|.+++.+..+..+.+.. .+.+.+. ....+.+++|.| ..|+.++++.|+..+++++          .++..+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~-~gad~n~-~~~~g~t~l~~a-~~g~~~~v~~Ll~~ga~~~----------~~~~~~   68 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLE-AGANPNA-PNSYGRRPIQVM-MMGSARVAELLLLHGAEPN----------CADPAT   68 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHT-TTCCTTC-CCSSSCCTTTSS-CTTCHHHHHHHHTTTCCCC----------CCCTTT
T ss_pred             CChhHHHHHHHCCCHHHHHHHHH-cCCcccc-cccccccccccc-ccccccccccccccccccc----------cccccc
Confidence            45677888888888777666554 3444443 334567788765 4788999999988875443          456665


Q ss_pred             C-cHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCccC
Q psy15728         92 W-TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREVG  139 (139)
Q Consensus        92 ~-t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~c  139 (139)
                      . ||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+|
T Consensus        69 ~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~  117 (125)
T d1bi7b_          69 LTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDV  117 (125)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHH
T ss_pred             cccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHH
Confidence            5 79999999999999999999999999999999999999999998753

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.1e-19  Score=117.82  Aligned_cols=51  Identities=29%  Similarity=0.337  Sum_probs=46.5

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCc
Q psy15728         87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        87 ~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                      .+..|.||||+|+..|+.+++++|++.|+|++.+|.+|+||||+|+..++.
T Consensus       141 ~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~  191 (221)
T d1iknd_         141 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPST  191 (221)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCH
T ss_pred             cccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCH
Confidence            456799999999999999999999999999999999999999999987764

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=6.8e-19  Score=117.96  Aligned_cols=86  Identities=24%  Similarity=0.285  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCC
Q psy15728         46 KEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGD  125 (139)
Q Consensus        46 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~  125 (139)
                      ++|.|+||+|+..|+.++++.||..+++...       .+.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.
T Consensus         7 ~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~-------i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~   79 (255)
T d1oy3d_           7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEY-------LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGH   79 (255)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGG-------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-------ccCcCCCCCCccchHHhhcccccccccccccccccccccccc
Confidence            5778999999999999999999998865431       225788999999999999999999999999999999999999


Q ss_pred             cHHHHHHHhCCcc
Q psy15728        126 TPLHKAAFVGREV  138 (139)
Q Consensus       126 tpl~~A~~~g~~~  138 (139)
                      ||||+|+..|+.+
T Consensus        80 tpL~~A~~~~~~~   92 (255)
T d1oy3d_          80 TALHLACRVRAHT   92 (255)
T ss_dssp             CHHHHHTTTTCHH
T ss_pred             hhhhhhhccCchH
Confidence            9999999988754

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4e-18  Score=120.65  Aligned_cols=78  Identities=32%  Similarity=0.416  Sum_probs=72.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHH
Q psy15728         50 ELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLH  129 (139)
Q Consensus        50 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~  129 (139)
                      ||||.||..|+.++|+.|+..|++++          ..|..|+||||+|+..|+.+++++|++.|++++.++.+|+||||
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in----------~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~   71 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPN----------VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH   71 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSC----------CSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCC----------CCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHH
Confidence            79999999999999999999885443          57889999999999999999999999999999999999999999


Q ss_pred             HHHHhCCc
Q psy15728        130 KAAFVGRE  137 (139)
Q Consensus       130 ~A~~~g~~  137 (139)
                      +|+..|+.
T Consensus        72 ~A~~~g~~   79 (408)
T d1n11a_          72 CAARIGHT   79 (408)
T ss_dssp             HHHHHTCH
T ss_pred             HHHHcCCH
Confidence            99998875

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.73  E-value=1.7e-18  Score=116.97  Aligned_cols=119  Identities=19%  Similarity=0.191  Sum_probs=86.9

Q ss_pred             CcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcH
Q psy15728         15 NRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTP   94 (139)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~   94 (139)
                      +++|.+++........+......  .+......+.||||+|+..|+.++++.|+......-  +..+..++.+|..|+||
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~--~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~--l~~Gadvn~~d~~G~Tp   77 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRES--VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC--IAAGADVNAMDCDENTP   77 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTT--TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHH--HHTCCCTTCCCTTSCCH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcC--CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHH--HHcCCCccccCCCCCee
Confidence            45665555555444444444332  344444568899999999999999988765432110  00001122689999999


Q ss_pred             HHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCc
Q psy15728         95 LHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        95 l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                      ||+|+..|+.+++++|+++|++++.++.+|+|||++|...|+.
T Consensus        78 Lh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~  120 (277)
T d2fo1e1          78 LMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF  120 (277)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCH
T ss_pred             eccccccccccccccccccccccccccccccccccchhhhcch
Confidence            9999999999999999999999999999999999999998864

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.3e-19  Score=117.98  Aligned_cols=125  Identities=19%  Similarity=0.087  Sum_probs=97.3

Q ss_pred             CCCCcchhhhhhccCCCccCCCchhh---HHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccC----
Q psy15728         12 PGGNRTHDQVRTRHSSSEEETPNSLS---AELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKG----   84 (139)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~----   84 (139)
                      .|.+++|.++..+..+..+.+.....   .+++. .+..+.||||+|+..|+.++++.|+..++..+.........    
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~-~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI-YNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCc-cCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            58899999999887766555543222   12222 34577899999999999999999999877655311000000    


Q ss_pred             --------------------------------------------------------------------------------
Q psy15728         85 --------------------------------------------------------------------------------   84 (139)
Q Consensus        85 --------------------------------------------------------------------------------   84 (139)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence                                                                                            


Q ss_pred             ----------ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCc
Q psy15728         85 ----------ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        85 ----------~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                                ..+|..|.||||+|+..|+.+++++|++.|+|++.+|.+|+||||+|+..|+.
T Consensus       161 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~  223 (228)
T d1k1aa_         161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVI  223 (228)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHH
T ss_pred             hhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCc
Confidence                      56788899999999999999999999999999999999999999999887754

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=5e-18  Score=113.68  Aligned_cols=85  Identities=28%  Similarity=0.302  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCC
Q psy15728         45 VKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAG  124 (139)
Q Consensus        45 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g  124 (139)
                      ...+.||||+|+..++.++++.|+..++..+.         ..+..|.||||+|+..++.+++++|++.|++++.+|..|
T Consensus       155 d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~---------~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g  225 (255)
T d1oy3d_         155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK---------PEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGG  225 (255)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC---------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cccCcccccccccccccccccchhcccccccc---------cccccccccccccccccHHHHHHHHHHCCCCCCCCCCCC
Confidence            44678999999999999999999998864431         356779999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhCCcc
Q psy15728        125 DTPLHKAAFVGREV  138 (139)
Q Consensus       125 ~tpl~~A~~~g~~~  138 (139)
                      +||||+|+..|+..
T Consensus       226 ~t~L~~A~~~~~~~  239 (255)
T d1oy3d_         226 RTPLGSALLRPNPI  239 (255)
T ss_dssp             CCHHHHHHTSSCHH
T ss_pred             CCHHHHHHHCCCHH
Confidence            99999999998754

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=2.4e-19  Score=108.11  Aligned_cols=106  Identities=23%  Similarity=0.261  Sum_probs=83.1

Q ss_pred             cchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHH
Q psy15728         16 RTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPL   95 (139)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l   95 (139)
                      ++..|++.+..+..+.+.. .+.+.+. ....+.++||+|+..|+.++++.++..+++.+          .+|..|+|||
T Consensus         5 pL~~A~~~g~~~~v~~Ll~-~g~d~n~-~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din----------~~d~~g~tpL   72 (118)
T d1myoa_           5 EFMWALKNGDLDEVKDYVA-KGEDVNR-TLEGGRKPLHYAADCGQLEILEFLLLKGADIN----------APDKHHITPL   72 (118)
T ss_dssp             HHHHHHHTTCHHHHHHHHT-TTCCCCC-CSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTT----------CCSSSCSCHH
T ss_pred             HHHHHHHCCCHHHHHHHHH-hhhcccc-ccccccccccccccccccccccccccccceee----------ecccccccch
Confidence            4455555555554444332 2233332 34567899999999999999999999885433          5788999999


Q ss_pred             HHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHH
Q psy15728         96 HLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAF  133 (139)
Q Consensus        96 ~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~  133 (139)
                      |+|+..++.+++++|++.|++++.+|..|+||||+|..
T Consensus        73 h~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          73 LSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             HHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCSS
T ss_pred             hhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHhH
Confidence            99999999999999999999999999999999998843

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=9e-18  Score=102.67  Aligned_cols=111  Identities=20%  Similarity=0.185  Sum_probs=85.3

Q ss_pred             chhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHH
Q psy15728         17 THDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLH   96 (139)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~   96 (139)
                      ++.++..+..+..+.+.. .+.+.+ ..+..+.|+||+|+..|+.++++.|+..+++.+          .+|..|+||||
T Consensus         5 L~~A~~~G~~~~v~~Ll~-~g~d~n-~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~----------~~d~~g~tpLh   72 (130)
T d1ycsb1           5 LLDSSLEGEFDLVQRIIY-EVDDPS-LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN----------AADSDGWTPLH   72 (130)
T ss_dssp             HHHHHHHTCHHHHHHHTS-TTSSCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT----------CCCTTCCCHHH
T ss_pred             HHHHHHcCCHHHHHHHHH-cCCCcc-ccccccccccccccccccccccccccccccccc----------cccccCccccc
Confidence            445666666555444443 233333 344578899999999999999999999885443          57899999999


Q ss_pred             HHHHhCCHHHHHHHHhCCCCCCcCCC-CCCcHHHHH--HHhCCccC
Q psy15728         97 LASYFGHKSVVEFLLDQGVDINAVND-AGDTPLHKA--AFVGREVG  139 (139)
Q Consensus        97 ~a~~~~~~~~~~~Ll~~ga~~~~~~~-~g~tpl~~A--~~~g~~~c  139 (139)
                      +|+..|+.+++++|+++|++++..+. .++||++++  +..|+.+|
T Consensus        73 ~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~ei  118 (130)
T d1ycsb1          73 CAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC  118 (130)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCH
T ss_pred             ccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHH
Confidence            99999999999999999999998775 588988766  45677653

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=2.3e-17  Score=108.74  Aligned_cols=123  Identities=19%  Similarity=0.145  Sum_probs=90.1

Q ss_pred             CcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhccccccccccc-------------
Q psy15728         15 NRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLS-------------   81 (139)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~-------------   81 (139)
                      .++|.++..+.....+.+...... .....+.++.||||+|+..|+.++++.||+.+++++..-..+             
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~-~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPS-LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGG-GTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            467788887776665554433222 333455678899999999999999999998877655310100             


Q ss_pred             ------------------------------------------------ccCccCCCCCCcHHHHHHHhCCHHHHHHHHhC
Q psy15728         82 ------------------------------------------------QKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ  113 (139)
Q Consensus        82 ------------------------------------------------~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~  113 (139)
                                                                      .....+|..|+||||+|+..++.+++++|++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  160 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL  160 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccc
Confidence                                                            00045678889999999999999999999988


Q ss_pred             C-CCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728        114 G-VDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus       114 g-a~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      | .+++.+|.+|+||||+|+..|+.+
T Consensus       161 ~~~~in~~d~~g~TpLh~A~~~~~~~  186 (229)
T d1ixva_         161 GKSAVNWQDKQGWTPLFHALAEGHGD  186 (229)
T ss_dssp             TCCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             ccccccccccccCCchhhhcccccHH
Confidence            6 678889999999999999988754

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.1e-16  Score=113.21  Aligned_cols=54  Identities=39%  Similarity=0.631  Sum_probs=51.1

Q ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        85 ~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      +.+|..|.||||+|+..|+.+++++|+++||+++.+|.+|+||||+|++.|+..
T Consensus       324 n~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~  377 (408)
T d1n11a_         324 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYIS  377 (408)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            368899999999999999999999999999999999999999999999999864

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.5e-17  Score=107.60  Aligned_cols=114  Identities=22%  Similarity=0.154  Sum_probs=75.2

Q ss_pred             ccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCC
Q psy15728         10 FAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSN   89 (139)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~   89 (139)
                      +..|.++++.++..+..+..+.+. ..+.+.+ .....+.++||+++..++...++.|+..+.++          +.+|.
T Consensus       100 d~~g~tpL~~A~~~~~~e~~~~Ll-~~g~d~~-~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i----------~~~d~  167 (223)
T d1uoha_         100 NQNGCTPLHYAASKNRHEIAVMLL-EGGANPD-AKDHYEATAMHRAAAKGNLKMIHILLYYKAST----------NIQDT  167 (223)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHH-HTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS----------CCCCT
T ss_pred             CCCCCchhhHHHHcCCHHHHHHHH-HCCCCCC-CcCCCCCccchhhhhcCCcchhhhhcccccee----------eeccC
Confidence            444555556555554433322221 1111111 12234456666666666666666665555322          36789


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCC
Q psy15728         90 LGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR  136 (139)
Q Consensus        90 ~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~  136 (139)
                      .|+||||+|+..++.+++++|++.|++++.+|.+|+||||+|. .|+
T Consensus       168 ~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~  213 (223)
T d1uoha_         168 EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGL  213 (223)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTH
T ss_pred             CCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCC
Confidence            9999999999999999999999999999999999999999984 443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.1e-15  Score=95.94  Aligned_cols=87  Identities=17%  Similarity=0.185  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHh---CCHHHHHHHHhCCCCCCcCCCCC
Q psy15728         48 IHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYF---GHKSVVEFLLDQGVDINAVNDAG  124 (139)
Q Consensus        48 ~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~---~~~~~~~~Ll~~ga~~~~~~~~g  124 (139)
                      ....|+.|++.+++..+..++..+.+.+......    ..+..|+||||+|+..   ++.+++++|++.|++++.+|..|
T Consensus         6 ~l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~----~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g   81 (154)
T d1dcqa1           6 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLA----NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKG   81 (154)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCS----SCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcc----cCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhh
Confidence            3456788899999999999998876554322222    4577799999999975   67899999999999999999999


Q ss_pred             CcHHHHHHHhCCcc
Q psy15728        125 DTPLHKAAFVGREV  138 (139)
Q Consensus       125 ~tpl~~A~~~g~~~  138 (139)
                      +||||+|+..|+.+
T Consensus        82 ~TpLh~A~~~~~~~   95 (154)
T d1dcqa1          82 STALHYCCLTDNAE   95 (154)
T ss_dssp             CCHHHHHHHTTCHH
T ss_pred             cccccccccccccc
Confidence            99999999999864

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.63  E-value=6.7e-17  Score=109.97  Aligned_cols=79  Identities=28%  Similarity=0.402  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCC
Q psy15728         45 VKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAG  124 (139)
Q Consensus        45 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g  124 (139)
                      ...+.++||+|+..|+.++++.|+..+++++          .++..|+||||+|+..|+.+++++|+++||+++.+|..|
T Consensus       196 ~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din----------~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G  265 (291)
T d1s70b_         196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVN----------IKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVG  265 (291)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT----------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cCCCCChhhHHHHcCChhhhcccccceeccc----------ccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            3456789999999999999999999885443          578889999999999999999999999999999999999


Q ss_pred             CcHHHHHHH
Q psy15728        125 DTPLHKAAF  133 (139)
Q Consensus       125 ~tpl~~A~~  133 (139)
                      +||||+|+.
T Consensus       266 ~TaL~~A~e  274 (291)
T d1s70b_         266 QTAFDVADE  274 (291)
T ss_dssp             CCTTTSCCS
T ss_pred             CCHHHHHHH
Confidence            999999865

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=1.1e-16  Score=110.20  Aligned_cols=48  Identities=33%  Similarity=0.434  Sum_probs=44.9

Q ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHH
Q psy15728         85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA  132 (139)
Q Consensus        85 ~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~  132 (139)
                      +.+|..|+||||+|+..|+.+++++|++.||+++.+|..|.|||++|+
T Consensus       253 n~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         253 NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            567889999999999999999999999999999999999999999985

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4e-16  Score=97.64  Aligned_cols=117  Identities=26%  Similarity=0.235  Sum_probs=84.5

Q ss_pred             ccccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccC
Q psy15728          8 IKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESK   87 (139)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~   87 (139)
                      .++..|.+++|.+.. +..+....+.. ...+.+. ....+.++++.++..++.++++.++..+.+.+          .+
T Consensus        31 ~~d~~g~t~L~~A~~-~~~~~v~~Ll~-~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n----------~~   97 (156)
T d1bd8a_          31 ALNRFGKTALQVMMF-GSTAIALELLK-QGASPNV-QDTSGTSPVHDAARTGFLDTLKVLVEHGADVN----------VP   97 (156)
T ss_dssp             CCCTTSCCHHHHSCT-TCHHHHHHHHH-TTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC----------CC
T ss_pred             ccCCCCCcccccccc-ccccccccccc-ccccccc-cccccccccccccccccccccccccccccccc----------cc
Confidence            345667777776653 22222222211 1112211 23345778888999999988888888774333          57


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        88 d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      |..|.||||+|+..|+.+++++|+ .|++++.+|.+|+||||+|+..|+.+
T Consensus        98 ~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~  147 (156)
T d1bd8a_          98 DGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQD  147 (156)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHH
T ss_pred             cCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHH
Confidence            888999999999999999999887 69999999999999999999999865

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.9e-16  Score=97.33  Aligned_cols=77  Identities=22%  Similarity=0.351  Sum_probs=69.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHH
Q psy15728         50 ELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLH  129 (139)
Q Consensus        50 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~  129 (139)
                      ++||+|+..|++++++.|++.|++++          .+|..|.||||+|+ .++.+++++|++.|++++..+..+.+|++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n----------~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~   71 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVN----------AQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIH   71 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTT----------CCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcC----------ccCCcccccccccc-cccccccccccccccccccccccCccccc
Confidence            78999999999999999999885443          57899999999886 78999999999999999999999999999


Q ss_pred             HHHHhCCc
Q psy15728        130 KAAFVGRE  137 (139)
Q Consensus       130 ~A~~~g~~  137 (139)
                      .++..++.
T Consensus        72 ~~~~~~~~   79 (156)
T d1ihba_          72 DAARAGFL   79 (156)
T ss_dssp             HHHHHTCH
T ss_pred             cccccccc
Confidence            99988865

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=6.3e-16  Score=100.15  Aligned_cols=86  Identities=26%  Similarity=0.305  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCc
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDT  126 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~t  126 (139)
                      +|.||||+|+..|+.++++.|+......+++++      .+|..|+||||+|+..|+.+++++|++.|++++.....+.+
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in------~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~   75 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD------IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT   75 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------ccCCCCCccceehhccccccccccccccccccccccccccc
Confidence            578999999999999999999875544443222      67899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCcc
Q psy15728        127 PLHKAAFVGREV  138 (139)
Q Consensus       127 pl~~A~~~g~~~  138 (139)
                      +++.|...++..
T Consensus        76 ~~~~a~~~~~~~   87 (228)
T d1k1aa_          76 AAHLACEHRSPT   87 (228)
T ss_dssp             HHHHHHHTTCHH
T ss_pred             cccccccccccc
Confidence            999998877643

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.60  E-value=5.4e-17  Score=113.87  Aligned_cols=83  Identities=14%  Similarity=0.056  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHH---HHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCC-
Q psy15728         46 KEIHELFLYNCRNGQLDKIKQ---LLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVN-  121 (139)
Q Consensus        46 ~~~~~~l~~a~~~g~~~~~~~---ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~-  121 (139)
                      ..+.|+||+|+..|+.+.++.   |+..++..+          .+|..|+||||+|+..|+.+++++|++.|++++..+ 
T Consensus        88 ~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in----------~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~  157 (346)
T d2ajaa1          88 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVK----------VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI  157 (346)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC------------CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHH
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccc----------ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccc
Confidence            357899999999999887765   566664333          578889999999999999999999999999998875 


Q ss_pred             -CCCCcHHHHHHHhCCcc
Q psy15728        122 -DAGDTPLHKAAFVGREV  138 (139)
Q Consensus       122 -~~g~tpl~~A~~~g~~~  138 (139)
                       .+|+||||+|+..||.+
T Consensus       158 ~~~g~t~L~~Aa~~g~~~  175 (346)
T d2ajaa1         158 QAENYHAFRLAAENGHLH  175 (346)
T ss_dssp             SHHHHHHHHHHHHTTCHH
T ss_pred             ccCCCChhHHHHHHhhHH
Confidence             46999999999999865

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.7e-16  Score=103.10  Aligned_cols=82  Identities=22%  Similarity=0.251  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCC
Q psy15728         46 KEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGD  125 (139)
Q Consensus        46 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~  125 (139)
                      ..+.||||+|+..|+.++++.|++.+.+++          .+|..|.||||+|+..++..++++|+..|++++.+|..|+
T Consensus       101 ~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~----------~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~  170 (223)
T d1uoha_         101 QNGCTPLHYAASKNRHEIAVMLLEGGANPD----------AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGN  170 (223)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCC
T ss_pred             CCCCchhhHHHHcCCHHHHHHHHHCCCCCC----------CcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCC
Confidence            345677777777777777777777664332          4566677777777777777777777777777777777777


Q ss_pred             cHHHHHHHhCCc
Q psy15728        126 TPLHKAAFVGRE  137 (139)
Q Consensus       126 tpl~~A~~~g~~  137 (139)
                      ||||+|+..|+.
T Consensus       171 TpL~~Aa~~g~~  182 (223)
T d1uoha_         171 TPLHLACDEERV  182 (223)
T ss_dssp             CHHHHHHHTTCH
T ss_pred             ceeccccccCcH
Confidence            888877777764

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.58  E-value=4.3e-15  Score=100.88  Aligned_cols=82  Identities=30%  Similarity=0.459  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCc
Q psy15728         47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDT  126 (139)
Q Consensus        47 ~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~t  126 (139)
                      .+.++|+.|+..|+++.|+.||+.|++++          .+|..|.||||+|+..|+.+++++|++.|++....+..+.+
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn----------~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~  108 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADIN----------YANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWI  108 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTT----------CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCC----------ccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccc
Confidence            45789999999999999999999985544          57899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCcc
Q psy15728        127 PLHKAAFVGREV  138 (139)
Q Consensus       127 pl~~A~~~g~~~  138 (139)
                      ||++++..|+.+
T Consensus       109 ~L~~a~~~~~~~  120 (291)
T d1s70b_         109 PLHAAASCGYLD  120 (291)
T ss_dssp             HHHHHHHHTCHH
T ss_pred             cccccccccccc
Confidence            999999988753

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.2e-16  Score=97.72  Aligned_cols=120  Identities=21%  Similarity=0.235  Sum_probs=78.2

Q ss_pred             cchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhccccccc------------------
Q psy15728         16 RTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVE------------------   77 (139)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~------------------   77 (139)
                      .+|.|+..+..+....+... +.+++. .+..+.||||+|+ .|+.++++.|+..+++.+..                  
T Consensus         4 ~Lh~Aa~~g~~~~v~~Ll~~-g~d~n~-~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           4 ELASAAARGDLEQLTSLLQN-NVNVNA-QNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHTTS-CCCTTC-CCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHC-CCCcCc-cCCcccccccccc-cccccccccccccccccccccccCcccccccccccccc
Confidence            34555555555444443332 223222 2344556666553 56666666666655543321                  


Q ss_pred             -----ccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCC-CCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         78 -----INLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV-DINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        78 -----~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga-~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                           +......+..|..|.+|+|+|+..++.+++++|+++|+ +++.+|..|+||||+|++.|+.+
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~  147 (156)
T d1ihba_          81 TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE  147 (156)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHH
Confidence                 00111224678889999999999999999999998876 88999999999999999998753

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.9e-16  Score=99.18  Aligned_cols=111  Identities=17%  Similarity=0.194  Sum_probs=87.9

Q ss_pred             cchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHH
Q psy15728         16 RTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPL   95 (139)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l   95 (139)
                      .++.|+..+..+..+.+....+.+.+. .+..+.+|||+|+ .|+.++++.|+..+.+++          ..+..|.+|+
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~~~n~-~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~----------~~~~~~~~~l   72 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELVHPDA-LNRFGKTALQVMM-FGSTAIALELLKQGASPN----------VQDTSGTSPV   72 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCTTC-CCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTT----------CCCTTSCCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCc-cCCCCCccccccc-cccccccccccccccccc----------cccccccccc
Confidence            466777777766655554433334333 3457789999886 588999999998875433          4677799999


Q ss_pred             HHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         96 HLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        96 ~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      +.++..++.++++++++.|++++.+|..|.||||+|+..|+.+
T Consensus        73 ~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~  115 (156)
T d1bd8a_          73 HDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA  115 (156)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH
T ss_pred             ccccccccccccccccccccccccccCCCCeeecccccccccc
Confidence            9999999999999999999999999999999999999998864

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.55  E-value=1.1e-17  Score=117.37  Aligned_cols=120  Identities=14%  Similarity=0.015  Sum_probs=86.3

Q ss_pred             ccCCCCcchhhhhhccCCCccC--CCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccC
Q psy15728         10 FAPGGNRTHDQVRTRHSSSEEE--TPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESK   87 (139)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~   87 (139)
                      ...+.+.++.++..+..+..+.  .....++..+. .+..+.|+||+|+..|+.++++.|++.+++.+..        ..
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~-~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~--------~~  157 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKV-IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA--------MI  157 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHH--------HH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccc-cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccc--------cc
Confidence            3455667778888876543222  22222333333 3457899999999999999999999998755431        12


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC---cCCCCCCcHHHHHHHhCCcc
Q psy15728         88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDIN---AVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        88 d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~---~~~~~g~tpl~~A~~~g~~~  138 (139)
                      +..|.||||+|+..|+.+++++|++.|++..   ..+.++.||++.|+..|+.+
T Consensus       158 ~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~  211 (346)
T d2ajaa1         158 QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN  211 (346)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred             ccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHH
Confidence            3458999999999999999999999998753   34456778888898999864

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=1.1e-14  Score=95.73  Aligned_cols=79  Identities=29%  Similarity=0.410  Sum_probs=68.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc---CCCCCCc
Q psy15728         50 ELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINA---VNDAGDT  126 (139)
Q Consensus        50 ~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~---~~~~g~t  126 (139)
                      +|||+|+..|+.+.++.||...+.     .++    .+|..|+||||+|+..|+.+++++|++.|++++.   .+..|.+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~-----~~~----~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~   72 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPS-----LLL----QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWT   72 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGG-----GTT----CCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCC
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCC-----ccc----ccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccc
Confidence            699999999999999999987532     222    6789999999999999999999999999999864   5678999


Q ss_pred             HHHHHHHhCCc
Q psy15728        127 PLHKAAFVGRE  137 (139)
Q Consensus       127 pl~~A~~~g~~  137 (139)
                      |++++...+..
T Consensus        73 ~~~~~~~~~~~   83 (229)
T d1ixva_          73 PFHIACSVGNL   83 (229)
T ss_dssp             HHHHHHHHTCH
T ss_pred             ccccccccccc
Confidence            99999887653

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=7.8e-17  Score=106.09  Aligned_cols=115  Identities=23%  Similarity=0.177  Sum_probs=70.5

Q ss_pred             CCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHH---HHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCC
Q psy15728         12 PGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKE---IHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKS   88 (139)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d   88 (139)
                      .|.+++|.++..+.......+..........+ ...   +.||||+|+..|+.++++.|+..+++++          .+|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-n~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~----------~~d   69 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE----------LRD   69 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC----------CCC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-ccCCCCCCcccccccccccccccccccccccccc----------ccc
Confidence            36677777777776655555544332221111 011   3667777777777777777776664332          456


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCC------cCCCCCCcHHHHHHHhCCc
Q psy15728         89 NLGWTPLHLASYFGHKSVVEFLLDQGVDIN------AVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        89 ~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~------~~~~~g~tpl~~A~~~g~~  137 (139)
                      ..|.|||++++..+..++++.|+..+....      .....|.||||+|+..|+.
T Consensus        70 ~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~  124 (221)
T d1iknd_          70 FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL  124 (221)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCH
T ss_pred             cccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCCh
Confidence            777777777777777777777777655532      2344567777777777654

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.1e-15  Score=101.91  Aligned_cols=93  Identities=26%  Similarity=0.302  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHh-ccccccc---------------------------ccccccCccCCCCCCcHHHH
Q psy15728         46 KEIHELFLYNCRNGQLDKIKQLLDH-CKENNVE---------------------------INLSQKGESKSNLGWTPLHL   97 (139)
Q Consensus        46 ~~~~~~l~~a~~~g~~~~~~~ll~~-~~~~~~~---------------------------~~~~~~~~~~d~~g~t~l~~   97 (139)
                      ..+.++||+|+..|+.++++.|+.. +.+++..                           +..+...+.+|..|.||||+
T Consensus       146 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~  225 (285)
T d1wdya_         146 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL  225 (285)
T ss_dssp             CCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             ccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccch
Confidence            3456778888888888888877764 2222210                           00111224678899999999


Q ss_pred             HHHhCCHHHHHHHHhC-CCCCCcCCCCCCcHHHHHHHhCCcc
Q psy15728         98 ASYFGHKSVVEFLLDQ-GVDINAVNDAGDTPLHKAAFVGREV  138 (139)
Q Consensus        98 a~~~~~~~~~~~Ll~~-ga~~~~~~~~g~tpl~~A~~~g~~~  138 (139)
                      |+..++.+++++|++. |++++.+|.+|+||||+|+..|+.+
T Consensus       226 a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~e  267 (285)
T d1wdya_         226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK  267 (285)
T ss_dssp             HHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             hhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHH
Confidence            9999999999999975 9999999999999999999999875

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.3e-12  Score=86.60  Aligned_cols=83  Identities=33%  Similarity=0.494  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCC
Q psy15728         46 KEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGD  125 (139)
Q Consensus        46 ~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~  125 (139)
                      .++.+.||+|++.|++++++.|++.|++++.         ..+..|.||||+|+..|+.+++++|++.+......+..+.
T Consensus         3 ~~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~---------~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~   73 (285)
T d1wdya_           3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNF---------QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGA   73 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTC---------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             CCCcHHHHHHHHcCCHHHHHHHHHCCCCcCc---------cCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccc
Confidence            4678999999999999999999999865542         2456799999999999999999999999999999999999


Q ss_pred             cHHHHHHHhCCc
Q psy15728        126 TPLHKAAFVGRE  137 (139)
Q Consensus       126 tpl~~A~~~g~~  137 (139)
                      +|.++++..+..
T Consensus        74 ~~~~~~~~~~~~   85 (285)
T d1wdya_          74 TPFLLAAIAGSV   85 (285)
T ss_dssp             CHHHHHHHHTCH
T ss_pred             hhhHHHhhcCCc
Confidence            999998877653

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=1.2e-12  Score=89.59  Aligned_cols=50  Identities=24%  Similarity=0.281  Sum_probs=47.2

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCC
Q psy15728         87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR  136 (139)
Q Consensus        87 ~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~  136 (139)
                      .|..|+||||+|+..|+.+++++|++.||+++.+|..|+||||.|+..++
T Consensus       103 ~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~  152 (301)
T d1sw6a_         103 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN  152 (301)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhccc
Confidence            38889999999999999999999999999999999999999999998664

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.17  E-value=1.2e-11  Score=79.80  Aligned_cols=68  Identities=35%  Similarity=0.475  Sum_probs=59.5

Q ss_pred             HHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHhCCc
Q psy15728         61 LDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE  137 (139)
Q Consensus        61 ~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~g~~  137 (139)
                      .++|+.|+++|++++.         ..|.+|.||||+|+..|+.+++++|+..|++++.++..+.++++.++..++.
T Consensus         2 ~~~v~~Ll~~g~din~---------~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~   69 (209)
T d1ot8a_           2 AQVISDLLAQGAELNA---------TMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAM   69 (209)
T ss_dssp             HHHHHHHHHHHHHHHH---------HHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHHCCCCcCc---------CcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccc
Confidence            4789999999976653         2466799999999999999999999999999999999999999999877653

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=8.5e-12  Score=75.02  Aligned_cols=92  Identities=20%  Similarity=0.183  Sum_probs=63.5

Q ss_pred             cccCCCCcchhhhhhccCCCccCCCchhhHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCC
Q psy15728          9 KFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKS   88 (139)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d   88 (139)
                      .+..+.+.++.+. .+..+..+.+ ...+.+.+......+.++||+|+..|+.++++.|+..+++++          .+|
T Consensus        32 ~~~~g~t~l~~a~-~g~~~~v~~L-l~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~----------~~d   99 (125)
T d1bi7b_          32 PNSYGRRPIQVMM-MGSARVAELL-LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD----------VRD   99 (125)
T ss_dssp             CCSSSCCTTTSSC-TTCHHHHHHH-HTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSS----------CCC
T ss_pred             ccccccccccccc-cccccccccc-cccccccccccccccccccccccccccccccccccccccccc----------ccc
Confidence            3455666666443 3332222211 112233333333444579999999999999999999985443          578


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHh
Q psy15728         89 NLGWTPLHLASYFGHKSVVEFLLD  112 (139)
Q Consensus        89 ~~g~t~l~~a~~~~~~~~~~~Ll~  112 (139)
                      ..|+||||+|+..|+.+++++|+.
T Consensus       100 ~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_         100 AWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999999974

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=4.3e-11  Score=73.61  Aligned_cols=56  Identities=11%  Similarity=0.152  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcccccccccccccCccCCCCCCcHHHHHHHhCCHHHHHHH
Q psy15728         45 VKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFL  110 (139)
Q Consensus        45 ~~~~~~~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~L  110 (139)
                      ...+.|+||+|+..|+.++++.|++.+++++          .+|..|.||||+|+..|+.+++++|
T Consensus        97 ~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~----------~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          97 DMLKMTALHWATEHNHQEVVELLIKYGADVH----------TQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccCchHHHhhhhcchhheeeeccccccCCc----------ccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            4577899999999999999999999885443          5789999999999999999999976