Psyllid ID: psy15735

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570----
MSNNLPQLGKVVIDAFRLINPNMMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLELAKHYNKALEEEEKMSPEQLAIKNVGKQDPKRHLEEKVDTLMTANIIQCLDRNMERLLRLGSGMPGLSQAPPVSDGPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKELAKHYNKALEEEEKMSPEQLAIKNVGKQDPKRHLEEKVDTLMTANIIQCLGGKLIEPLWGSMEMMTFFAIVNIGVAISSTLFYFFLYMCTFNTDLLFFVRIHGLTGYISGVLVAVKQIMPDHVILNTGLGKMTNRNIPLLVILIASILWLIGLVDSIRPTMTLFGTLVSWIYLRFYQYHTNGTRGDMADNFNFANFFPTIIQPPIAVVCNTIHEFLVRIGLCRKMVRKFDMSVAPSSGITITLPGIDPNDAERRSSVYCKE
ccccccccccEEEEEEccccccccccccccccccccccccccccHHHHHHccccEEEEEEEEEEccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEcHHHHHHHHHHHHcccccEEEEEEEEEEccccEEEEEEEEEccccccccccccccHHHHHHHHHHHHHcccccEEEEEEEEcccccccccHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccccccccccccEEEcEEEEEccccccHHccccccHHHHHEEEHHHHHHHHHHHHHHHHEEEcccccEEEEEEcccHHHHHHHEEEEEEcccccEEEEcccccEEEcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHccc
ccccccccccEEEEHHHccccccEccccccccccccccccccccHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHcccHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHEEHHHHHHHHHHHHHcccccEEEHHHHccccccccEEEEEEEEEcccccccEEEEcccHHHHHHHHHHHHHcccccHEEEEEccccccccEEcccEcccHHHHHHccccEEEEEEccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHEEEEEEHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHEEccHHHHHHHHHHHHHHHHHHccccEEEEccccHEEcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHcHHHcccHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEcccccHHHHHHHHHHHHcc
msnnlpqlgKVVIDAFRlinpnmmvlgqeprqttsnlghlqKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKktwmdglslqdynehcklnegtVNDMLELAKHYNKALEeeekmspeqLAIKnvgkqdpkrhLEEKVDTLMTANIIQCLDRNMERLLRlgsgmpglsqappvsdgpvvdtAEQVYISSLALLKMLkhgragvpmEVMGLMLGEFVDEYTVRVIDVfampqtgtgvsveaVDPVFQAKMLDMLkqtgrpemvvgwyhshpgfgcwlsgvdinTQQSFEALSERAVAVVVDPIQSVKELAKHYNKALEeeekmspeqLAIKnvgkqdpkrhLEEKVDTLMTANIIQCLGGklieplwgsmeMMTFFAIVNIGVAISSTLFYFFLYMCTFNTDLLFFVRIHGLTGYISGVLVAVKQimpdhvilntglgkmtnrniPLLVILIASILWLIGLVDSIRPTMTLFGTLVSWIYLRFYQyhtngtrgdmadnfnfanffptiiqppiaVVCNTIHEFLVRIGLCRKMVRKFdmsvapssgititlpgidpndaerrssvycke
MSNNLPQLGKVVIDAFRLINPNMMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLELAKHYNKALEeeekmspeqlaiknvgkqdpkrHLEEKVDTLMTANIIQCLDRNMERLLRLGSGMPGLSQAPPVSDGPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVIDVFAmpqtgtgvsvEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKELAKHYNKALeeeekmspeqlaiknvgkqdpkRHLEEKVDTLMTANIIQCLGGKLIEPLWGSMEMMTFFAIVNIGVAISSTLFYFFLYMCTFNTDLLFFVRIHGLTGYISGVLVAVKQIMPDHVILNTGLGKMTNRNIPLLVILIASILWLIGLVDSIRPTMTLFGTLVSWIYLRFYQYHTNGTRGDMADNFNFANFFPTIIQPPIAVVCNTIHEFLVRIGLCRKMVRKFDMsvapssgititlpgidpndaerrssvycke
MSNNLPQLGKVVIDAFRLINPNMMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLELAKHYNKALEEEEKMSPEQLAIKNVGKQDPKRHLEEKVDTLMTANIIQCLDRNMERLLRLGSGMPGLSQAPPVSDGPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKELAKHYNKALEEEEKMSPEQLAIKNVGKQDPKRHLEEKVDTLMTANIIQCLGGKLIEPLWGSMEMMTFFAIVNIGVAISSTLFYFFLYMCTFNTDLLFFVRIHGLTGYISGVLVAVKQIMPDHVILNTGLGKMTNRNIPLLVILIASILWLIGLVDSIRPTMTLFGTLVSWIYLRFYQYHTNGTRGDMADnfnfanffPTIIQPPIAVVCNTIHEFLVRIGLCRKMVRKFDMSVAPSSGITITLPGIDPNDAERRSSVYCKE
*******LGKVVIDAFRLINPNMMVLG*********LGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLELAKHY********************************VDTLMTANIIQCLDRNMERLLRL*****************VVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKELAK**********************************VDTLMTANIIQCLGGKLIEPLWGSMEMMTFFAIVNIGVAISSTLFYFFLYMCTFNTDLLFFVRIHGLTGYISGVLVAVKQIMPDHVILNTGLGKMTNRNIPLLVILIASILWLIGLVDSIRPTMTLFGTLVSWIYLRFYQYHTNGTRGDMADNFNFANFFPTIIQPPIAVVCNTIHEFLVRIGLCRKMVRKFDMSVAPSSGITITL******************
*****PQ*GKVVIDAFRLINPNMM**********SNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGL*****************DMLELAK*****************************HLEEKVDTLMTANIIQCLDRNMERL**********************DTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKELAKHYNKALEEEEKMSPEQLAIKNVGKQDPKRHLEEKVDTLMTANIIQCLGGKLIEPLWGSMEMMTFFAIVNIGVAISSTLFYFFLYMCTFNTDLLFFVRIHGLTGYISGVLVAVKQIMPDHVILNTGLGKMTNRNIPLLVILIASILWLIGLVDSIRPTMTLFGTLVSWIYLRFYQYHTN***GDMADNFNFANFFPTIIQPPIAVVCNTIHEFLVRIGLCR*******************************SSVYC**
MSNNLPQLGKVVIDAFRLINPNMMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLELAKHYNKALEEEEKMSPEQLAIKNVGKQDPKRHLEEKVDTLMTANIIQCLDRNMERLLRLGSGMPGLSQAPPVSDGPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKELAKHYNKALEEEEKMSPEQLAIKNVGKQDPKRHLEEKVDTLMTANIIQCLGGKLIEPLWGSMEMMTFFAIVNIGVAISSTLFYFFLYMCTFNTDLLFFVRIHGLTGYISGVLVAVKQIMPDHVILNTGLGKMTNRNIPLLVILIASILWLIGLVDSIRPTMTLFGTLVSWIYLRFYQYHTNGTRGDMADNFNFANFFPTIIQPPIAVVCNTIHEFLVRIGLCRKMVRKFDMSVAPSSGITITLPGIDPNDA**********
***NLPQLGKVVIDAFRLINPNMMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLELAKHYNKALEEEEKMSPEQLAIKNVGKQDPKRHLEEKVDTLMTANIIQCLDRNMERLLRLGSGMPGLSQAPPVSDGPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKELAKHYNKALEEEEKMSPEQLAIKNVGKQDPKRHLEEKVDTLMTANIIQCLGGKLIEPLWGSMEMMTFFAIVNIGVAISSTLFYFFLYMCTFNTDLLFFVRIHGLTGYISGVLVAVKQIMPDHVILNTGLGKMTNRNIPLLVILIASILWLIGLVDSIRPTMTLFGTLVSWIYLRFYQYHT*GTRGDMADNFNFANFFPTIIQPPIAVVCNTIHEFLVRIGLCRKMVRKFDMSVAPSSGITITLPGIDP*DAERRSSV*CK*
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MSNNLPQLGKVVIDAFRLINPNMMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTxxxxxxxxxxxxxxxxxxxxxSPEQLAIKNVGKQDPKRHLEEKVDTLMTANIIQCLDRNMERLLRLGSGMPGLSQAPPVSDGPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPxxxxxxxxxxxxxxxxxxxxxSPEQLAIKNVGKQDPKRHLEEKVDTLMTANIIQCLGGKLIEPLWGSMEMMTFFAIVNIGVAISSTLFYFFLYMCTFNTDLLFFVRIHGLTGYISGVLVAVKQIMPDHVILNTGLGKMTNRNIPLLVILIASILWLIGLVDSIRPTMTLFGTLVSWIYLRFYQYHTNGTRGDMADNFNFANFFPTIIQPPIAVVCNTIHEFLVRIGLCRKMVRKFDMSVAPSSGITITLPGIDPNDAERRSSVYCKE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query574 2.2.26 [Sep-21-2011]
Q9V3H2308 26S proteasome non-ATPase yes N/A 0.261 0.487 0.921 8e-78
O35593310 26S proteasome non-ATPase yes N/A 0.219 0.406 0.962 5e-72
O00487310 26S proteasome non-ATPase yes N/A 0.219 0.406 0.962 5e-72
Q9LT08308 26S proteasome non-ATPase yes N/A 0.263 0.490 0.849 2e-71
O76577312 26S proteasome non-ATPase yes N/A 0.229 0.423 0.931 1e-68
P41878308 26S proteasome regulatory yes N/A 0.254 0.474 0.770 4e-65
Q6FKS1306 26S proteasome regulatory yes N/A 0.257 0.483 0.764 2e-63
P43588306 26S proteasome regulatory yes N/A 0.257 0.483 0.764 6e-63
Q750E9311 26S proteasome regulatory yes N/A 0.254 0.469 0.751 1e-62
Q86IJ1306 26S proteasome non-ATPase yes N/A 0.315 0.591 0.636 2e-61
>sp|Q9V3H2|PSDE_DROME 26S proteasome non-ATPase regulatory subunit 14 OS=Drosophila melanogaster GN=Rpn11 PE=1 SV=1 Back     alignment and function desciption
 Score =  291 bits (746), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 141/153 (92%), Positives = 145/153 (94%), Gaps = 3/153 (1%)

Query: 160 MERLLRLGSGMPGLSQAPPVSDGPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLG 219
           M+RLLRLG  MP   QA P +D PVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLG
Sbjct: 1   MDRLLRLGGAMP---QAAPPTDAPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLG 57

Query: 220 EFVDEYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFG 279
           EFVD+YTV+VIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFG
Sbjct: 58  EFVDDYTVQVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFG 117

Query: 280 CWLSGVDINTQQSFEALSERAVAVVVDPIQSVK 312
           CWLSGVDINTQQSFEALSERAVAVVVDPIQSVK
Sbjct: 118 CWLSGVDINTQQSFEALSERAVAVVVDPIQSVK 150
Metalloprotease component of the 26S proteasome that specifically cleaves 'Lys-63'-linked polyubiquitin chains. The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of the 'Lys-63'-specific deubiquitination of the proteasome is unclear.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: -
>sp|O35593|PSDE_MOUSE 26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus GN=Psmd14 PE=1 SV=2 Back     alignment and function description
>sp|O00487|PSDE_HUMAN 26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens GN=PSMD14 PE=1 SV=1 Back     alignment and function description
>sp|Q9LT08|PSDE_ARATH 26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis thaliana GN=RPN11 PE=2 SV=1 Back     alignment and function description
>sp|O76577|PSDE_CAEEL 26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis elegans GN=rpn-11 PE=1 SV=1 Back     alignment and function description
>sp|P41878|RPN11_SCHPO 26S proteasome regulatory subunit rpn11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn11 PE=1 SV=2 Back     alignment and function description
>sp|Q6FKS1|RPN11_CANGA 26S proteasome regulatory subunit RPN11 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPN11 PE=3 SV=1 Back     alignment and function description
>sp|P43588|RPN11_YEAST 26S proteasome regulatory subunit RPN11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN11 PE=1 SV=1 Back     alignment and function description
>sp|Q750E9|RPN11_ASHGO 26S proteasome regulatory subunit RPN11 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPN11 PE=3 SV=1 Back     alignment and function description
>sp|Q86IJ1|PSDE_DICDI 26S proteasome non-ATPase regulatory subunit 14 OS=Dictyostelium discoideum GN=psmD14 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query574
383851578362 PREDICTED: transmembrane protein 115-lik 0.367 0.582 0.693 9e-83
322794139362 hypothetical protein SINV_09587 [Solenop 0.365 0.580 0.687 3e-82
332022508365 Transmembrane protein 115 [Acromyrmex ec 0.365 0.575 0.687 4e-82
340722232362 PREDICTED: transmembrane protein 115-lik 0.367 0.582 0.683 5e-82
350396280362 PREDICTED: transmembrane protein 115-lik 0.367 0.582 0.683 6e-82
332374186311 unknown [Dendroctonus ponderosae] 0.254 0.469 0.960 9e-82
66553451362 PREDICTED: transmembrane protein 115-lik 0.365 0.580 0.687 1e-81
91088291311 PREDICTED: similar to 26S proteasome non 0.254 0.469 0.960 3e-81
307209199311 26S proteasome non-ATPase regulatory sub 0.254 0.469 0.954 5e-81
58386372311 AGAP008617-PA [Anopheles gambiae str. PE 0.254 0.469 0.954 5e-81
>gi|383851578|ref|XP_003701309.1| PREDICTED: transmembrane protein 115-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 147/212 (69%), Positives = 172/212 (81%), Gaps = 1/212 (0%)

Query: 363 LGGKLIEPLWGSMEMMTFFAIVNIGVAISSTLFYFFLYMCTFNTDLLFFVRIHGLTGYIS 422
           L GKLIEPLWG+MEMMTFFAIVN GVA+ S LFY FLYMCT + DLLF + IHGLTGYI+
Sbjct: 91  LCGKLIEPLWGAMEMMTFFAIVNFGVAVLSALFYLFLYMCTSDPDLLFDIHIHGLTGYIA 150

Query: 423 GVLVAVKQIMPDHVILNTGLGKMTNRNIPLLVILIASILWLIGLVDSIRPTMTLFGTLVS 482
           GV VAVKQIMPDH++L T +GK TNRNIPL+V ++  ILWL GL++   PTM L G L+S
Sbjct: 151 GVAVAVKQIMPDHILLKTPIGKFTNRNIPLMVWVMGVILWLFGLLEGTNPTMFLSGLLIS 210

Query: 483 WIYLRFYQYHTNGTRGDMADNFNFANFFPTIIQPPIAVVCNTIHEFLVRIGLCRKMVRKF 542
           W+YLRFYQ H NGTRGDMADNF FA+FFP ++QPPIAVV NTIH F VRIG+CRK+VR+F
Sbjct: 211 WVYLRFYQKHNNGTRGDMADNFTFASFFPNVLQPPIAVVSNTIHSFFVRIGICRKVVRRF 270

Query: 543 DMSVAPSSGITITLPGIDPNDAERRSSVYCKE 574
           DMS AP  G+ I LPGIDP+D+ERR  +  K 
Sbjct: 271 DMSNAP-PGLIINLPGIDPHDSERRRQIALKA 301

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|322794139|gb|EFZ17348.1| hypothetical protein SINV_09587 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|332022508|gb|EGI62811.1| Transmembrane protein 115 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|340722232|ref|XP_003399512.1| PREDICTED: transmembrane protein 115-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350396280|ref|XP_003484498.1| PREDICTED: transmembrane protein 115-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|332374186|gb|AEE62234.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|66553451|ref|XP_392569.2| PREDICTED: transmembrane protein 115-like [Apis mellifera] gi|380029149|ref|XP_003698244.1| PREDICTED: transmembrane protein 115-like [Apis florea] Back     alignment and taxonomy information
>gi|91088291|ref|XP_966426.1| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit 14 isoform 1 [Tribolium castaneum] gi|270011793|gb|EFA08241.1| hypothetical protein TcasGA2_TC005869 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|307209199|gb|EFN86306.1| 26S proteasome non-ATPase regulatory subunit 14 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|58386372|ref|XP_314713.2| AGAP008617-PA [Anopheles gambiae str. PEST] gi|55239804|gb|EAA10169.2| AGAP008617-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query574
TAIR|locus:2171696308 AT5G23540 "AT5G23540" [Arabido 0.261 0.487 0.857 9.4e-82
ZFIN|ZDB-GENE-070410-56310 psmd14 "proteasome (prosome, m 0.264 0.490 0.941 2.8e-73
UNIPROTKB|Q17QP9310 PSMD14 "Proteasome (Prosome, m 0.264 0.490 0.934 7.5e-73
UNIPROTKB|O00487310 PSMD14 "26S proteasome non-ATP 0.264 0.490 0.934 7.5e-73
MGI|MGI:1913284310 Psmd14 "proteasome (prosome, m 0.264 0.490 0.934 7.5e-73
RGD|1594532310 Psmd14 "proteasome (prosome, m 0.264 0.490 0.934 7.5e-73
CGD|CAL0003932312 orf19.7264 [Candida albicans ( 0.263 0.483 0.771 3.3e-71
FB|FBgn0028694308 Rpn11 "Regulatory particle non 0.261 0.487 0.921 1.6e-70
ASPGD|ASPL0000076795338 AN4492 [Emericella nidulans (t 0.270 0.458 0.765 6e-70
UNIPROTKB|E1C6N0300 PSMD14 "Uncharacterized protei 0.247 0.473 0.944 1.7e-68
TAIR|locus:2171696 AT5G23540 "AT5G23540" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 660 (237.4 bits), Expect = 9.4e-82, Sum P(2) = 9.4e-82
 Identities = 132/154 (85%), Positives = 140/154 (90%)

Query:   160 MERLLRL-GSGMPGLSQAPPVSDGPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLML 218
             MERL R+ G+G  GL  A P  D P +DT+EQVYISSLALLKMLKHGRAGVPMEVMGLML
Sbjct:     1 MERLQRIFGAG-GGLGHASP--DSPTLDTSEQVYISSLALLKMLKHGRAGVPMEVMGLML 57

Query:   219 GEFVDEYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGF 278
             GEFVDEYTVRV+DVFAMPQ+GTGVSVEAVD VFQ  MLDMLKQTGRPEMVVGWYHSHPGF
Sbjct:    58 GEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGF 117

Query:   279 GCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK 312
             GCWLSGVDINTQQSFEAL++RAVAVVVDPIQSVK
Sbjct:   118 GCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK 151
GO:0008541 "proteasome regulatory particle, lid subcomplex" evidence=ISS
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS
GO:0005634 "nucleus" evidence=TAS
GO:0030163 "protein catabolic process" evidence=TAS
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0000502 "proteasome complex" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0006096 "glycolysis" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009853 "photorespiration" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0043248 "proteasome assembly" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0080129 "proteasome core complex assembly" evidence=RCA
ZFIN|ZDB-GENE-070410-56 psmd14 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 14" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q17QP9 PSMD14 "Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 14" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O00487 PSMD14 "26S proteasome non-ATPase regulatory subunit 14" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1913284 Psmd14 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 14" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1594532 Psmd14 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 14" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
CGD|CAL0003932 orf19.7264 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
FB|FBgn0028694 Rpn11 "Regulatory particle non-ATPase 11" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ASPGD|ASPL0000076795 AN4492 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|E1C6N0 PSMD14 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O00487PSDE_HUMAN3, ., 4, ., 1, 9, ., -0.96240.21950.4064yesN/A
Q750E9RPN11_ASHGONo assigned EC number0.75160.25430.4694yesN/A
O76577PSDE_CAEEL3, ., 4, ., 1, 9, ., -0.93180.22990.4230yesN/A
Q9V3H2PSDE_DROME3, ., 4, ., 1, 9, ., -0.92150.26130.4870yesN/A
P41878RPN11_SCHPONo assigned EC number0.77070.25430.4740yesN/A
Q6FKS1RPN11_CANGANo assigned EC number0.76470.25780.4836yesN/A
Q9LT08PSDE_ARATH3, ., 4, ., 1, 9, ., -0.84960.26300.4902yesN/A
O35593PSDE_MOUSE3, ., 4, ., 1, 9, ., -0.96240.21950.4064yesN/A
Q8SQY3RPN11_ENCCUNo assigned EC number0.76290.22290.4353yesN/A
P43588RPN11_YEASTNo assigned EC number0.76470.25780.4836yesN/A
Q86IJ1PSDE_DICDI3, ., 4, ., 1, 9, ., -0.63630.31530.5915yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.17.n1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
cd08069268 cd08069, MPN_RPN11_CSN5, Mov34/MPN/PAD-1 family: p 6e-86
cd08058119 cd08058, MPN_euk_mb, Mpr1p, Pad1p N-terminal (MPN) 4e-47
cd08069268 cd08069, MPN_RPN11_CSN5, Mov34/MPN/PAD-1 family: p 1e-46
pfam01398117 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin pro 5e-40
smart00232135 smart00232, JAB_MPN, JAB/MPN domain 1e-36
pfam13012115 pfam13012, MitMem_reg, Maintenance of mitochondria 2e-28
pfam0855199 pfam08551, DUF1751, Eukaryotic integral membrane p 5e-20
COG1310134 COG1310, COG1310, Predicted metal-dependent protea 3e-19
cd08065266 cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN) 5e-15
cd08068244 cd08068, MPN_BRCC36, Mov34/MPN/PAD-1 family: BRCC3 1e-11
cd08067187 cd08067, MPN_2A_DUB, Mov34/MPN/PAD-1 family: Histo 1e-09
cd07767116 cd07767, MPN, Mpr1p, Pad1p N-terminal (MPN) domain 4e-09
cd08057157 cd08057, MPN_euk_non_mb, Mpr1p, Pad1p N-terminal ( 1e-08
cd08066173 cd08066, MPN_AMSH_like, Mov34/MPN/PAD-1 family 2e-06
pfam1446498 pfam14464, Prok-JAB, Prokaryotic homologs of the J 3e-06
cd08070128 cd08070, MPN_like, Mpr1p, Pad1p N-terminal (MPN) d 4e-06
cd08069268 cd08069, MPN_RPN11_CSN5, Mov34/MPN/PAD-1 family: p 9e-05
pfam13012115 pfam13012, MitMem_reg, Maintenance of mitochondria 9e-05
cd08064265 cd08064, MPN_eIF3f, Mpr1p, Pad1p N-terminal (MPN) 2e-04
>gnl|CDD|163700 cd08069, MPN_RPN11_CSN5, Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5 Back     alignment and domain information 
 Score =  267 bits (685), Expect = 6e-86
 Identities = 87/133 (65%), Positives = 102/133 (76%), Gaps = 4/133 (3%)

Query: 181 DGPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVIDVFAMPQTGT 240
             P  D  E+VYISSLALLKMLKH RAG P+EVMGLMLG+ VD+YT+ V+DVFA+P  GT
Sbjct: 2   WKPDPDYFEKVYISSLALLKMLKHARAGGPIEVMGLMLGK-VDDYTIIVVDVFALPVEGT 60

Query: 241 GVSVEAVDPVFQAKMLD--MLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSE 298
              V A D  FQ  M+   MLKQTGRPE VVGWYHSHPG+GCWLSG+D+NTQQ  + L +
Sbjct: 61  ETRVNAQD-EFQEYMVQYEMLKQTGRPENVVGWYHSHPGYGCWLSGIDVNTQQLNQQLQD 119

Query: 299 RAVAVVVDPIQSV 311
             VAVVVDPI+S+
Sbjct: 120 PFVAVVVDPIRSL 132

This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations in Rpn11 cause cell cycle and mitochondrial defects, temperature sensitivity and sensitivity to DNA damaging reagents such as UV. It has been shown that the C-terminal region of Rpn11 is involved in the regulation of the mitochondrial fission and tubulation processes. CSN5, one of the eight subunits of CSN, is critical for nuclear export and the degradation of several tumor suppressor proteins, including p53, p27, and Smad4. Its MPN+ domain is critical for the physical interaction of RUNX3 and Jab1. It has been suggested that the direct interaction of CSN5/JAB1 with p27 provides p27 with a leucine-rich nuclear export signal (NES), which is required for binding to chromosomal region maintenance 1 (CRM1), and facilitates nuclear export. The over-expression of CSN5/JAB1 also has been implicated in cancer initiation and progression, including cancer of the lung, pancreas, mouth, thyroid, and breast, suggesting that the oncogenic activity of CSN5 is associated with the down-regulation of RUNX3. Length = 268
>gnl|CDD|163689 cd08058, MPN_euk_mb, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic Back     alignment and domain information
>gnl|CDD|163700 cd08069, MPN_RPN11_CSN5, Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5 Back     alignment and domain information
>gnl|CDD|216478 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease Back     alignment and domain information
>gnl|CDD|214573 smart00232, JAB_MPN, JAB/MPN domain Back     alignment and domain information
>gnl|CDD|205193 pfam13012, MitMem_reg, Maintenance of mitochondrial structure and function Back     alignment and domain information
>gnl|CDD|219898 pfam08551, DUF1751, Eukaryotic integral membrane protein (DUF1751) Back     alignment and domain information
>gnl|CDD|224229 COG1310, COG1310, Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|163696 cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h Back     alignment and domain information
>gnl|CDD|163699 cd08068, MPN_BRCC36, Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex Back     alignment and domain information
>gnl|CDD|163698 cd08067, MPN_2A_DUB, Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase Back     alignment and domain information
>gnl|CDD|163686 cd07767, MPN, Mpr1p, Pad1p N-terminal (MPN) domains Back     alignment and domain information
>gnl|CDD|163688 cd08057, MPN_euk_non_mb, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic Back     alignment and domain information
>gnl|CDD|163697 cd08066, MPN_AMSH_like, Mov34/MPN/PAD-1 family Back     alignment and domain information
>gnl|CDD|222766 pfam14464, Prok-JAB, Prokaryotic homologs of the JAB domain Back     alignment and domain information
>gnl|CDD|163701 cd08070, MPN_like, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) Back     alignment and domain information
>gnl|CDD|163700 cd08069, MPN_RPN11_CSN5, Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5 Back     alignment and domain information
>gnl|CDD|205193 pfam13012, MitMem_reg, Maintenance of mitochondrial structure and function Back     alignment and domain information
>gnl|CDD|163695 cd08064, MPN_eIF3f, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 574
KOG2890|consensus326 100.0
KOG1555|consensus316 100.0
cd08069268 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal 99.96
KOG1555|consensus316 99.96
KOG1554|consensus347 99.95
cd08067187 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deu 99.94
cd08065266 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains wi 99.94
cd08068244 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subun 99.92
cd08058119 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains w 99.91
KOG1560|consensus339 99.91
PF01398114 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; Inte 99.91
cd08069268 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal 99.9
smart00232135 JAB_MPN JAB/MPN domain. Domain in Jun kinase activ 99.87
cd08066173 MPN_AMSH_like Mov34/MPN/PAD-1 family. AMSH (associ 99.84
cd08057157 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domai 99.82
cd08062280 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains w 99.81
cd08070128 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains wit 99.8
cd07767116 MPN Mpr1p, Pad1p N-terminal (MPN) domains. MPN (al 99.8
cd08064265 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains wi 99.76
PLN03246303 26S proteasome regulatory subunit; Provisional 99.73
cd08063288 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains wit 99.67
PF0855199 DUF1751: Eukaryotic integral membrane protein (DUF 99.66
KOG1556|consensus309 99.6
cd08072117 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1 99.58
cd08073108 MPN_NLPC_P60 Mpr1p, Pad1p N-terminal (MPN) domains 99.57
cd08060182 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family 99.52
COG1310134 Predicted metal-dependent protease of the PAD1/JAB 99.52
KOG2975|consensus288 99.49
PF14464104 Prok-JAB: Prokaryotic homologs of the JAB domain; 99.34
KOG2880|consensus424 99.31
PF13012115 MitMem_reg: Maintenance of mitochondrial structure 99.23
COG0705228 Membrane associated serine protease [Amino acid tr 99.23
TIGR03735192 PRTRC_A PRTRC system protein A. A novel genetic sy 99.15
cd08059101 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains 99.04
PTZ00101278 rhomboid-1 protease; Provisional 98.91
PF03665196 UPF0172: Uncharacterised protein family (UPF0172); 98.89
TIGR02256131 ICE_VC0181 integrative and conjugative element pro 98.76
KOG3050|consensus299 98.63
cd08056252 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains wit 98.61
PRK10907276 intramembrane serine protease GlpG; Provisional 98.6
PF01694145 Rhomboid: Rhomboid family; InterPro: IPR022764 In 98.57
KOG2632|consensus258 98.38
KOG3289|consensus199 98.27
cd08061274 MPN_NPL4 Mov34/MPN/PAD-1 family: nuclear protein l 98.01
KOG2290|consensus652 97.6
KOG2289|consensus316 97.49
PF05021306 NPL4: NPL4 family; InterPro: IPR007717 The HRD4 ge 96.7
cd08065266 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains wi 96.58
PF04511197 DER1: Der1-like family; InterPro: IPR007599 The en 96.19
KOG1554|consensus347 94.49
KOG0858|consensus239 91.91
COG5291313 Predicted membrane protein [Function unknown] 90.36
KOG2834|consensus510 85.61
>KOG2890|consensus Back     alignment and domain information 
Probab=100.00  E-value=8.7e-52  Score=413.08  Aligned_cols=224  Identities=40%  Similarity=0.693  Sum_probs=204.2

Q ss_pred             hHHHHHHhhhhhHHHHHhhcc--------cccccccchhhhhhhhHhhHHHHHHHHHHHHHHHHhcCCcccchhhccChh
Q psy15735        347 LEEKVDTLMTANIIQCLGGKL--------IEPLWGSMEMMTFFAIVNIGVAISSTLFYFFLYMCTFNTDLLFFVRIHGLT  418 (574)
Q Consensus       347 Le~~v~~fm~~nI~~~l~~mL--------~E~~wGs~EflkF~~vv~v~~~il~~~~~~~~y~~t~~~~~l~~~~i~G~~  418 (574)
                      ++...+.|++.|+|..+.+.+        +||.||+.|++|||.++|.+++++.++.+++.|++|.+..+++ .+++|+.
T Consensus        68 WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~-~~i~G~~  146 (326)
T KOG2890|consen   68 WTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLY-IPIHGTT  146 (326)
T ss_pred             HHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEE-EEeccch
Confidence            455569999999999876544        7999999999999999999999999999999999999988775 6799999


Q ss_pred             HHHHHHHHHHHhhcCCceeeccccccccchhHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHhhccCC-CCcc
Q psy15735        419 GYISGVLVAVKQIMPDHVILNTGLGKMTNRNIPLLVILIASILWLIGLVDSIRPTMTLFGTLVSWIYLRFYQYHT-NGTR  497 (574)
Q Consensus       419 g~i~G~LVA~kQl~Pd~~il~~~~~~ir~K~lP~i~ll~~~~l~~~~~~~~~a~~~~~~G~~~sWiYLRf~q~~~-~~~r  497 (574)
                      |+++|++||+||++||+.|+-.+..++.+|++|++.++++++++++.+....++....+|+++||+||||||+|+ +..|
T Consensus       147 gilaGilVa~kQllpd~~il~~~~~r~~~~~lP~~~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLRfyq~h~~~~~r  226 (326)
T KOG2890|consen  147 GILAGILVAWKQLLPDTIILELKSGRFLYAHLPLLVLFLSLILSIITFLVFASLPSITFGVLVSWTYLRFYQRHPTDELR  226 (326)
T ss_pred             HHHHHHHHHHHHHcCceeEEeccchhhhhhhCCHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhheecccCCccccc
Confidence            999999999999999999998888999999999999999999999888877888889999999999999999997 4589


Q ss_pred             CCcccCccccccCCccCcchhHhhhhHHHHHHHHHcccccccccccCCCCCCCCcccCCCCCCchhhhhhhhhhccC
Q psy15735        498 GDMADNFNFANFFPTIIQPPIAVVCNTIHEFLVRIGLCRKMVRKFDMSVAPSSGITITLPGIDPNDAERRSSVYCKE  574 (574)
Q Consensus       498 GD~Sd~Faf~~FFP~~~~p~i~~i~~~~~~~lv~~~lc~~~~~~~d~~~~~~~~~~~~lPg~~~~eAeRRR~~a~~~  574 (574)
                      ||+||+|+|++|||+.+||++.+|+|.+|++|++.|.|++..+  |.+ ++.++..+++||+|++|||||||+|||+
T Consensus       227 GD~Sd~F~fvsFFP~v~qp~~~li~n~~~~~l~~~~~~~~~~~--d~~-~~~~s~~~~lpg~d~~d~eRRRQ~alka  300 (326)
T KOG2890|consen  227 GDCSDSFTFVSFFPEVLQPFFHLIANTIYRILVRMGVVKKPHV--DID-LDSGSVGANLPGLDPKDAERRRQLALKA  300 (326)
T ss_pred             CCchhceehhhhchhhhhHHHHHHHHHHHHHHHHhccccccce--ecc-cCcccccccCCCCChhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999655  444 3345567899999999999999999984

>KOG1555|consensus Back     alignment and domain information
>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5 Back     alignment and domain information
>KOG1555|consensus Back     alignment and domain information
>KOG1554|consensus Back     alignment and domain information
>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase Back     alignment and domain information
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h Back     alignment and domain information
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex Back     alignment and domain information
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic Back     alignment and domain information
>KOG1560|consensus Back     alignment and domain information
>PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors Back     alignment and domain information
>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5 Back     alignment and domain information
>smart00232 JAB_MPN JAB/MPN domain Back     alignment and domain information
>cd08066 MPN_AMSH_like Mov34/MPN/PAD-1 family Back     alignment and domain information
>cd08057 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic Back     alignment and domain information
>cd08062 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8 Back     alignment and domain information
>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) Back     alignment and domain information
>cd07767 MPN Mpr1p, Pad1p N-terminal (MPN) domains Back     alignment and domain information
>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f Back     alignment and domain information
>PLN03246 26S proteasome regulatory subunit; Provisional Back     alignment and domain information
>cd08063 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6 Back     alignment and domain information
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins Back     alignment and domain information
>KOG1556|consensus Back     alignment and domain information
>cd08072 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1/MPN/Mov34 metalloenzyme Back     alignment and domain information
>cd08073 MPN_NLPC_P60 Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains Back     alignment and domain information
>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p) Back     alignment and domain information
>COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only] Back     alignment and domain information
>KOG2975|consensus Back     alignment and domain information
>PF14464 Prok-JAB: Prokaryotic homologs of the JAB domain; PDB: 1OI0_A 1R5X_B 2KKS_A 2KCQ_A Back     alignment and domain information
>KOG2880|consensus Back     alignment and domain information
>PF13012 MitMem_reg: Maintenance of mitochondrial structure and function; PDB: 2O96_B 2O95_A Back     alignment and domain information
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03735 PRTRC_A PRTRC system protein A Back     alignment and domain information
>cd08059 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); prokaryotic Back     alignment and domain information
>PTZ00101 rhomboid-1 protease; Provisional Back     alignment and domain information
>PF03665 UPF0172: Uncharacterised protein family (UPF0172); InterPro: IPR005366 This is a small family of proteins of unknown function Back     alignment and domain information
>TIGR02256 ICE_VC0181 integrative and conjugative element protein, VC0181 family Back     alignment and domain information
>KOG3050|consensus Back     alignment and domain information
>cd08056 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8 Back     alignment and domain information
>PRK10907 intramembrane serine protease GlpG; Provisional Back     alignment and domain information
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2632|consensus Back     alignment and domain information
>KOG3289|consensus Back     alignment and domain information
>cd08061 MPN_NPL4 Mov34/MPN/PAD-1 family: nuclear protein localization-4 (Npl4) domain Back     alignment and domain information
>KOG2290|consensus Back     alignment and domain information
>KOG2289|consensus Back     alignment and domain information
>PF05021 NPL4: NPL4 family; InterPro: IPR007717 The HRD4 gene is identical to NPL4, a gene previously implicated in nuclear transport Back     alignment and domain information
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h Back     alignment and domain information
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins Back     alignment and domain information
>KOG1554|consensus Back     alignment and domain information
>KOG0858|consensus Back     alignment and domain information
>COG5291 Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG2834|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
4b4t_V306 Near-Atomic Resolution Structural Model Of The Yeas 4e-64
4f7o_A257 Crystal Structure Of Csn5 Length = 257 1e-23
4b4t_U338 Near-Atomic Resolution Structural Model Of The Yeas 4e-05
2o96_A178 Crystal Structure Of The Metal-Free Dimeric Human M 1e-04
2o95_A187 Crystal Structure Of The Metal-Free Dimeric Human M 1e-04
2znr_A178 Crystal Structure Of The Dub Domain Of Human Amsh-L 2e-04
3rzu_A187 The Crystal Structure Of The Catalytic Domain Of Am 8e-04
>pdb|4B4T|V Chain V, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 306 Back     alignment and structure 
Iteration: 1

 Score =  242 bits (617), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 117/153 (76%), Positives = 129/153 (84%), Gaps = 5/153 (3%)
Query: 160 MERLLRLGSGMPGLSQAPPVSDGPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLG 219
           MERL RL      ++     +D    DT E VYISS+ALLKMLKHGRAGVPMEVMGLMLG
Sbjct: 1   MERLQRLM-----MNSKVGSADTGRDDTKETVYISSIALLKMLKHGRAGVPMEVMGLMLG 55
Query: 220 EFVDEYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFG 279
           EFVD+YTV V+DVFAMPQ+GTGVSVEAVD VFQAKM+DMLKQTGR +MVVGWYHSHPGFG
Sbjct: 56  EFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFG 115
Query: 280 CWLSGVDINTQQSFEALSERAVAVVVDPIQSVK 312
           CWLS VD+NTQ+SFE L+ RAVAVVVDPIQSVK
Sbjct: 116 CWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVK 148
>pdb|4F7O|A Chain A, Crystal Structure Of Csn5 Length = 257 Back     alignment and structure
>pdb|4B4T|U Chain U, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 338 Back     alignment and structure
>pdb|2O96|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34 Mpn Domain (Residues 1-177) Length = 178 Back     alignment and structure
>pdb|2O95|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34 Mpn Domain (Residues 1-186) Length = 187 Back     alignment and structure
>pdb|2ZNR|A Chain A, Crystal Structure Of The Dub Domain Of Human Amsh-Lp Length = 178 Back     alignment and structure
>pdb|3RZU|A Chain A, The Crystal Structure Of The Catalytic Domain Of Amsh Length = 187 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
3rzv_A211 STAM-binding protein; ubiquitin hydrolase, endosom 7e-44
3rzv_A211 STAM-binding protein; ubiquitin hydrolase, endosom 3e-07
2znr_A178 AMSH-like protease; metal binding protein, alterna 3e-36
2znr_A178 AMSH-like protease; metal binding protein, alterna 9e-08
4e0q_A141 COP9 signalosome complex subunit 6; MPN (MPR1P and 4e-32
2o95_A187 26S proteasome non-ATPase regulatory subunit 7; PS 1e-31
2kcq_A153 MOV34/MPN/PAD-1 family; NESG, structure, structura 9e-27
2kks_A146 Uncharacterized protein; NESG, structural genomics 1e-25
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1oi0_A124 AF2198, hypothetical protein AF2198; proteasome, d 9e-06
2og4_A254 PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN 9e-06
2p8r_A273 PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, t 1e-04
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Length = 211 Back     alignment and structure
 Score =  154 bits (390), Expect = 7e-44
 Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 10/154 (6%)

Query: 174 SQAPPVSDGPVVDTAEQVYISSLALLKMLKHGRAGVPM--EVMGLMLGEFV-DEYTVRVI 230
                    P +D    V +      + L+   A         G++ G+ + +E+T+  +
Sbjct: 27  GALSNSESIPTIDGLRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMRNEFTITHV 86

Query: 231 DVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQ 290
            +          + E  + +F         Q  +  + +GW H+HP    +LS VD++T 
Sbjct: 87  LIPKQSAGSDYCNTENEEELFL-------IQDQQGLITLGWIHTHPTQTAFLSSVDLHTH 139

Query: 291 QSFEALSERAVAVVVDPIQSVKELAKHYNKALEE 324
            S++ +   +VA+V  P        K  +  LEE
Sbjct: 140 CSYQMMLPESVAIVCSPKFQETGFFKLTDHGLEE 173
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Length = 211 Back     alignment and structure
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Length = 178 Back     alignment and structure
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Length = 178 Back     alignment and structure
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster} Length = 141 Back     alignment and structure
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A Length = 187 Back     alignment and structure
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855} Length = 153 Back     alignment and structure
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense} Length = 146 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A Length = 124 Back     alignment and structure
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae} Length = 254 Back     alignment and structure
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A Length = 273 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query574
4b4t_V306 26S proteasome regulatory subunit RPN11; hydrolase 100.0
4b4t_V306 26S proteasome regulatory subunit RPN11; hydrolase 100.0
4e0q_A141 COP9 signalosome complex subunit 6; MPN (MPR1P and 99.91
2znr_A178 AMSH-like protease; metal binding protein, alterna 99.91
2o95_A187 26S proteasome non-ATPase regulatory subunit 7; PS 99.9
2kcq_A153 MOV34/MPN/PAD-1 family; NESG, structure, structura 99.87
2kks_A146 Uncharacterized protein; NESG, structural genomics 99.87
3rzv_A211 STAM-binding protein; ubiquitin hydrolase, endosom 99.86
4b4t_U338 RPN8, 26S proteasome regulatory subunit RPN8; hydr 99.7
1oi0_A124 AF2198, hypothetical protein AF2198; proteasome, d 99.67
2xov_A181 Rhomboid protease GLPG; membrane protein, hydrolas 99.01
2og4_A254 PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN 98.83
2nr9_A196 Protein GLPG homolog; intramembrane peptidase, rho 98.82
2p8r_A273 PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, t 98.68
3sbg_A565 PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, 97.67
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=1.1e-40  Score=344.65  Aligned_cols=206  Identities=67%  Similarity=1.042  Sum_probs=175.6

Q ss_pred             HHHHhhhcCCCCCCCCCCCCCCCCCCCCccEEEECHHHHHHHHHHHhcCCCceEEEEeeeEEcCCceEEEEEEEeCCccc
Q psy15735        160 MERLLRLGSGMPGLSQAPPVSDGPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVIDVFAMPQTG  239 (574)
Q Consensus       160 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~V~Is~~vllkIl~Ha~~~~p~Ev~GlLlG~~~~~~~l~Vt~~fp~p~~~  239 (574)
                      |++++|+++.. ++|.    .+.+.++++++|+|+++|++||++||+++.|.||||+|+|.+.++++++|+||||+|+.+
T Consensus         1 ~~~~~~~~~~~-~~~~----~~~~~~~~~~~V~is~lallkm~~Ha~~~~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~   75 (306)
T 4b4t_V            1 MERLQRLMMNS-KVGS----ADTGRDDTKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSG   75 (306)
T ss_dssp             ---------------------CCCCCSSCCEEEECHHHHHHHHHHTCSCSSSCCEEEEEEEEETTTEEEEEEEECCCCEE
T ss_pred             ChhHHHhhhcc-CCCC----CCCCCCCCCCEEEEeHHHHHHHHHHhcCCCCceEEEEEeeEEcCCeEEEEEEEEeCCcCC
Confidence            57788876532 2332    256778999999999999999999999999999999999987777799999999999999


Q ss_pred             CCCCcccccHHHHHHHHHHHHhcCCCCcEEEEEccCCCCCCcCCHHHHHHHHHHHhcCCCeEEEEEcCCCCch-------
Q psy15735        240 TGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK-------  312 (574)
Q Consensus       240 ~~~~~~~idp~~q~~ml~~lr~~g~~~~vVGWYHSHP~~~~~pS~~Di~tq~~yQ~~~p~~V~LIvDp~~s~~-------  312 (574)
                      ++++++++|+.||.+|+++++++|+++++||||||||+++||||..||++|..||.+.+++|+||+||.++.+       
T Consensus        76 ~~~~v~~~d~~y~~~m~~~~~~v~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~~G~~~i~A  155 (306)
T 4b4t_V           76 TGVSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDA  155 (306)
T ss_dssp             SSSCEECCCHHHHHHHHHHHHHHSCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSSSCSSCEEE
T ss_pred             CCCchhcCCHHHHHHHHHHHHHhCCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCCCCceeeeE
Confidence            9999988999999999999999999999999999999999999999999999999999999999999977643       


Q ss_pred             --------------------------------------------------------------------------------
Q psy15735        313 --------------------------------------------------------------------------------  312 (574)
Q Consensus       313 --------------------------------------------------------------------------------  312 (574)
                                                                                                      
T Consensus       156 fr~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~~~l~~~~~~~~~~  235 (306)
T 4b4t_V          156 FRLIDTGALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEE  235 (306)
T ss_dssp             EECCHHHHHHCCCCCSCC----------------------CEEECSCCCCCSSCTHHHHHHHHC----------CHHHHH
T ss_pred             EEecCccccccccCcccccccccccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccccccccCcHHHHHH
Confidence                                                                                            


Q ss_pred             ----------hHHHHHHHHhhhccCCCccchhcccccCCccchhhHHHHHHhhhhhHHHHHhhccccc
Q psy15735        313 ----------ELAKHYNKALEEEEKMSPEQLAIKNVGKQDPKRHLEEKVDTLMTANIIQCLGGKLIEP  370 (574)
Q Consensus       313 ----------rLs~~y~~~~~ee~~ft~EeL~v~~vg~~DP~~~Le~~v~~fm~~nI~~~l~~mL~E~  370 (574)
                                .+..+|.+.++++.+.+++++..+++++.||++||++.++.+|++||.++|++|++..
T Consensus       236 ~~~~~i~~m~~~~~~y~k~v~~e~~~~~~~l~~~~vgk~dp~~~l~~~~~~l~~~ni~~~l~~~~~~~  303 (306)
T 4b4t_V          236 SNLAATKSMVKIAEQYSKRIEEEKELTEEELKTRYVGRQDPKKHLSETADETLENNIVSVLTAGVNSV  303 (306)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHTCSCSSCCSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccccCCHHHHHhhccCccChHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence                      3456777777777777889999999999999999999999999999999999998643
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster} Back     alignment and structure
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Back     alignment and structure
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A Back     alignment and structure
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855} Back     alignment and structure
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense} Back     alignment and structure
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Back     alignment and structure
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A Back     alignment and structure
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Back     alignment and structure
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Back     alignment and structure
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A Back     alignment and structure
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 574
d1oi0a_121 c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeo 3e-15
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 121 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: JAB1/MPN domain
family: JAB1/MPN domain
domain: Hypothetical protein AF2198
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 70.0 bits (171), Expect = 3e-15
 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 16/105 (15%)

Query: 191 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVIDVFAMPQTGTGVSVEAVDPV 250
           + IS   L  +L+  ++  P E + L+ G         + ++  +P      SV AV   
Sbjct: 4   MKISRGLLKTILEAAKSAHPDEFIALLSGS-----KDVMDELIFLPFVSG--SVSAVIH- 55

Query: 251 FQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEA 295
                LDML    +   V G  HSHP   C  S  D++    F  
Sbjct: 56  -----LDMLPIGMK---VFGTVHSHPSPSCRPSEEDLSLFTRFGK 92

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query574
d1oi0a_121 Hypothetical protein AF2198 {Archaeon Archaeoglobu 99.62
d3b45a1180 GlpG {Escherichia coli [TaxId: 562]} 98.73
d2nr9a1189 GlpG homolog HI0618 {Haemophilus influenzae [TaxId 98.73
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: JAB1/MPN domain
family: JAB1/MPN domain
domain: Hypothetical protein AF2198
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.62  E-value=2.2e-16  Score=139.81  Aligned_cols=102  Identities=23%  Similarity=0.210  Sum_probs=76.8

Q ss_pred             cEEEECHHHHHHHHHHHhcCCCceEEEEeeeEEcCCceEEEEEEEeCCcccCCCCcccccHHHHHHHHHHHHhcCCCCcE
Q psy15735        189 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMV  268 (574)
Q Consensus       189 ~~V~Is~~vllkIl~Ha~~~~p~Ev~GlLlG~~~~~~~l~Vt~~fp~p~~~~~~~~~~idp~~q~~ml~~lr~~g~~~~v  268 (574)
                      .+++|+..++.+|++||++++|+|+||+|+|..  +   .|+.++++||...++.  ..++.+       +++  .++++
T Consensus         2 ~~l~I~~~~l~~i~~hA~~~~P~E~cGlL~G~~--~---~i~~~~~~~n~~~~~~--~~~~~~-------~~~--~~~~i   65 (121)
T d1oi0a_           2 SSMKISRGLLKTILEAAKSAHPDEFIALLSGSK--D---VMDELIFLPFVSGSVS--AVIHLD-------MLP--IGMKV   65 (121)
T ss_dssp             CSCEECHHHHHHHHHHHHHHTTSCCEEEEEEST--T---EECEEEECCCCC------------------------CCCEE
T ss_pred             CeEEECHHHHHHHHHHHHhcCCceeEEEEEecC--C---cEEEEEEcCCCCCCcc--cccccc-------hhh--cCCeE
Confidence            468999999999999999999999999999963  2   4788899998765332  122221       122  34799


Q ss_pred             EEEEccCCCCCCcCCHHHHHHHHHHHhcCCCeEEEEEcCCCCc
Q psy15735        269 VGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSV  311 (574)
Q Consensus       269 VGWYHSHP~~~~~pS~~Di~tq~~yQ~~~p~~V~LIvDp~~s~  311 (574)
                      +|||||||+.+++||..|++++.     .++.+++|+++-...
T Consensus        66 vgi~HSHP~~~a~PS~~D~~~~~-----~~g~~~~Ivs~p~~~  103 (121)
T d1oi0a_          66 FGTVHSHPSPSCRPSEEDLSLFT-----RFGKYHIIVCYPYDE  103 (121)
T ss_dssp             EEEEEEESSSCCSCCHHHHHHHH-----HSCSEEEEEETTCCT
T ss_pred             EEEEEecCCCCCCcCHHHHHhhh-----ccCCEEEEEeCCCCC
Confidence            99999999999999999998753     368899999985443
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure