Psyllid ID: psy15745

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVYSE
ccccHHHHHHHHHHHHHHHHccccccccccccccEEEEEccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccccccEEEEEEcccEEEEEcc
ccccHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEcccEEEEcc
LPCSYVTYALLGSYLVqselgdydqeehkgnpdylrefkfapnqtpELEQRVMELHkthklpcsYVTYALLGSYLVqselgdydqeehkgnpdylrefkfapnqtpELEQRVMELHkthkgqtpaeAELNYLDNAKKLSMYGVvlhpakdsegvdIMLGVCASGILVYSE
LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKthkgqtpaeAELNYLDNAKKLSMYGVVLHpakdsegvdiMLGVCASGILVYSE
LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVYSE
**CSYVTYALLGSYLVQSELGDY**************F************RVMELHKTHKLPCSYVTYALLGSYLVQSELGD**********************************************LNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVY**
LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVYSE
LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVYSE
LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVYSE
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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LPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVYSE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query170 2.2.26 [Sep-21-2011]
Q9V8R9 1698 Protein 4.1 homolog OS=Dr no N/A 0.770 0.077 0.631 3e-44
Q9H4G0 881 Band 4.1-like protein 1 O yes N/A 0.652 0.125 0.707 3e-43
Q9Z2H5 879 Band 4.1-like protein 1 O yes N/A 0.652 0.126 0.707 3e-43
Q9WTP0 879 Band 4.1-like protein 1 O no N/A 0.652 0.126 0.699 1e-42
Q9WV92 929 Band 4.1-like protein 3 O no N/A 0.641 0.117 0.720 2e-41
Q9Y2J2 1087 Band 4.1-like protein 3 O no N/A 0.641 0.100 0.702 1e-40
Q9N179 617 Protein 4.1 OS=Bos taurus no N/A 0.641 0.176 0.675 1e-38
P11171 864 Protein 4.1 OS=Homo sapie no N/A 0.641 0.126 0.666 2e-38
P48193 858 Protein 4.1 OS=Mus muscul no N/A 0.641 0.127 0.666 3e-38
O43491 1005 Band 4.1-like protein 2 O no N/A 0.641 0.108 0.675 3e-38
>sp|Q9V8R9|41_DROME Protein 4.1 homolog OS=Drosophila melanogaster GN=cora PE=1 SV=1 Back     alignment and function desciption
 Score =  177 bits (448), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 89/141 (63%), Positives = 109/141 (77%), Gaps = 10/141 (7%)

Query: 39  KFAPNQTPELEQRVMELHKT---------HKLPCSYVTYALLGSYLVQSELGDYDQEEHK 89
           KF P +  +L++ +   H            +LPC++VT+ALLGSYLVQSE+GDYD EE  
Sbjct: 109 KFYPPEPSQLKEDITRYHLCLQVRNDILEGRLPCTFVTHALLGSYLVQSEMGDYDAEEMP 168

Query: 90  GNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAK 149
               YL++FK APNQT ELE +VM+LHKTHKGQ+PAEAEL+YL+NAKKL+MYGV LHPAK
Sbjct: 169 TRA-YLKDFKIAPNQTAELEDKVMDLHKTHKGQSPAEAELHYLENAKKLAMYGVDLHPAK 227

Query: 150 DSEGVDIMLGVCASGILVYSE 170
           DSEGVDIMLGVCASG+LVY +
Sbjct: 228 DSEGVDIMLGVCASGLLVYRD 248
An integral component of the septate junction. May play a role in cell-cell interactions that are necessary for proper development. Vital for embryonic development.
Drosophila melanogaster (taxid: 7227)
>sp|Q9H4G0|E41L1_HUMAN Band 4.1-like protein 1 OS=Homo sapiens GN=EPB41L1 PE=1 SV=2 Back     alignment and function description
>sp|Q9Z2H5|E41L1_MOUSE Band 4.1-like protein 1 OS=Mus musculus GN=Epb41l1 PE=1 SV=2 Back     alignment and function description
>sp|Q9WTP0|E41L1_RAT Band 4.1-like protein 1 OS=Rattus norvegicus GN=Epb41l1 PE=1 SV=1 Back     alignment and function description
>sp|Q9WV92|E41L3_MOUSE Band 4.1-like protein 3 OS=Mus musculus GN=Epb41l3 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y2J2|E41L3_HUMAN Band 4.1-like protein 3 OS=Homo sapiens GN=EPB41L3 PE=1 SV=2 Back     alignment and function description
>sp|Q9N179|41_BOVIN Protein 4.1 OS=Bos taurus GN=EPB41 PE=2 SV=1 Back     alignment and function description
>sp|P11171|41_HUMAN Protein 4.1 OS=Homo sapiens GN=EPB41 PE=1 SV=4 Back     alignment and function description
>sp|P48193|41_MOUSE Protein 4.1 OS=Mus musculus GN=Epb41 PE=1 SV=2 Back     alignment and function description
>sp|O43491|E41L2_HUMAN Band 4.1-like protein 2 OS=Homo sapiens GN=EPB41L2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query170
328720415 1124 PREDICTED: protein 4.1 homolog isoform 2 0.652 0.098 0.810 3e-49
328720417 1091 PREDICTED: protein 4.1 homolog isoform 1 0.652 0.101 0.810 3e-49
444175741 389 coracle, partial [Blattella germanica] 0.641 0.280 0.810 1e-46
328720419 1052 PREDICTED: protein 4.1 homolog isoform 3 0.788 0.127 0.664 2e-46
380021739 950 PREDICTED: protein 4.1 homolog [Apis flo 0.652 0.116 0.778 2e-45
350419594 942 PREDICTED: protein 4.1 homolog [Bombus i 0.652 0.117 0.769 2e-45
328787716 684 PREDICTED: protein 4.1 homolog [Apis mel 0.652 0.162 0.778 3e-45
340713414 906 PREDICTED: protein 4.1 homolog [Bombus t 0.652 0.122 0.769 3e-45
260799322 709 hypothetical protein BRAFLDRAFT_121759 [ 0.729 0.174 0.696 6e-45
321454576 922 hypothetical protein DAPPUDRAFT_219239 [ 0.652 0.120 0.756 1e-44
>gi|328720415|ref|XP_003247024.1| PREDICTED: protein 4.1 homolog isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 90/111 (81%), Positives = 105/111 (94%)

Query: 60  KLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTH 119
           KLPCS+VT+ALLGSYLVQSELGDYD +EHK N +YL+EFKFAPNQ+ ELE++VMELH+TH
Sbjct: 133 KLPCSFVTHALLGSYLVQSELGDYDIDEHKNNTNYLKEFKFAPNQSQELEEKVMELHRTH 192

Query: 120 KGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVYSE 170
           KGQTPAEAELNYL+NAKKL+MYGV LHPAKDSEGVDIMLGVC+SG+LV+ +
Sbjct: 193 KGQTPAEAELNYLNNAKKLAMYGVDLHPAKDSEGVDIMLGVCSSGLLVHRD 243

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328720417|ref|XP_001943226.2| PREDICTED: protein 4.1 homolog isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|444175741|emb|CCI09964.1| coracle, partial [Blattella germanica] Back     alignment and taxonomy information
>gi|328720419|ref|XP_003247025.1| PREDICTED: protein 4.1 homolog isoform 3 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|380021739|ref|XP_003694715.1| PREDICTED: protein 4.1 homolog [Apis florea] Back     alignment and taxonomy information
>gi|350419594|ref|XP_003492237.1| PREDICTED: protein 4.1 homolog [Bombus impatiens] Back     alignment and taxonomy information
>gi|328787716|ref|XP_392323.4| PREDICTED: protein 4.1 homolog [Apis mellifera] Back     alignment and taxonomy information
>gi|340713414|ref|XP_003395238.1| PREDICTED: protein 4.1 homolog [Bombus terrestris] Back     alignment and taxonomy information
>gi|260799322|ref|XP_002594646.1| hypothetical protein BRAFLDRAFT_121759 [Branchiostoma floridae] gi|229279881|gb|EEN50657.1| hypothetical protein BRAFLDRAFT_121759 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|321454576|gb|EFX65741.1| hypothetical protein DAPPUDRAFT_219239 [Daphnia pulex] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query170
ZFIN|ZDB-GENE-090312-61 877 si:dkey-178k16.1 "si:dkey-178k 0.641 0.124 0.729 1.6e-41
UNIPROTKB|Q4VXN0257 EPB41L1 "Band 4.1-like protein 0.652 0.431 0.707 4.6e-41
FB|FBgn0010434 1698 cora "coracle" [Drosophila mel 0.647 0.064 0.756 1.7e-40
MGI|MGI:103010 879 Epb4.1l1 "erythrocyte protein 0.652 0.126 0.707 4e-40
UNIPROTKB|F1N611 880 EPB41L1 "Uncharacterized prote 0.652 0.126 0.707 4e-40
UNIPROTKB|Q9H4G0 881 EPB41L1 "Band 4.1-like protein 0.652 0.125 0.707 4e-40
UNIPROTKB|F1S485 881 EPB41L1 "Uncharacterized prote 0.652 0.125 0.707 4e-40
UNIPROTKB|E1BZY9 883 EPB41L1 "Uncharacterized prote 0.652 0.125 0.707 4e-40
UNIPROTKB|E1BQX7 895 EPB41L1 "Uncharacterized prote 0.652 0.124 0.707 4.2e-40
UNIPROTKB|E2QXY5 871 EPB41L1 "Uncharacterized prote 0.652 0.127 0.707 5e-40
ZFIN|ZDB-GENE-090312-61 si:dkey-178k16.1 "si:dkey-178k16.1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 449 (163.1 bits), Expect = 1.6e-41, P = 1.6e-41
 Identities = 81/111 (72%), Positives = 100/111 (90%)

Query:    60 KLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTH 119
             +LPCS+VT+ALLGSY +Q+ELGDYD EEH   PDY+ EF+FAPNQT ELE+RVMELH+T+
Sbjct:   161 RLPCSFVTHALLGSYAIQAELGDYDPEEH--GPDYINEFRFAPNQTRELEERVMELHRTY 218

Query:   120 KGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVYSE 170
             +G +PAEAE+N+L+NAKKLSMYGV LH AKDSEG+DIMLGVCASG+L+Y +
Sbjct:   219 RGMSPAEAEINFLENAKKLSMYGVDLHHAKDSEGIDIMLGVCASGLLIYRD 269
GO:0003779 "actin binding" evidence=IEA
GO:0005856 "cytoskeleton" evidence=IEA
GO:0008092 "cytoskeletal protein binding" evidence=IEA
GO:0019898 "extrinsic to membrane" evidence=IEA
GO:0005198 "structural molecule activity" evidence=IEA
GO:0030866 "cortical actin cytoskeleton organization" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
UNIPROTKB|Q4VXN0 EPB41L1 "Band 4.1-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0010434 cora "coracle" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:103010 Epb4.1l1 "erythrocyte protein band 4.1-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1N611 EPB41L1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H4G0 EPB41L1 "Band 4.1-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S485 EPB41L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZY9 EPB41L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BQX7 EPB41L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2QXY5 EPB41L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9Z2H5E41L1_MOUSENo assigned EC number0.70790.65290.1262yesN/A
Q9H4G0E41L1_HUMANNo assigned EC number0.70790.65290.1259yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query170
cd13184113 cd13184, FERM_C_4_1_family, Protein 4 4e-29
smart00295201 smart00295, B41, Band 4 2e-22
pfam00373113 pfam00373, FERM_M, FERM central domain 5e-22
cd13189123 cd13189, FERM_C_PTPN4_PTPN3_like, Protein tyrosine 2e-20
cd13186111 cd13186, FERM_C_NBL4_NBL5, Novel band 4 5e-14
cd13193122 cd13193, FERM_C_FARP1-like, FERM, RhoGEF and pleck 9e-11
smart00295201 smart00295, B41, Band 4 2e-09
cd13188111 cd13188, FERM_C_PTPN14_PTPN21, Protein tyrosine ph 1e-08
cd13187124 cd13187, FERM_C_PTPH13, Protein tyrosine phosphata 6e-08
cd13192105 cd13192, FERM_C_FRMD3_FRMD5, FERM domain-containin 9e-08
cd13195131 cd13195, FERM_C_MYLIP_IDOL, The E3 ubiquitin ligas 2e-07
pfam0938090 pfam09380, FERM_C, FERM C-terminal PH-like domain 1e-04
cd0083691 cd00836, FERM_C-lobe, FERM domain C-lobe 3e-04
>gnl|CDD|241338 cd13184, FERM_C_4_1_family, Protein 4 Back     alignment and domain information 
 Score =  103 bits (258), Expect = 4e-29
 Identities = 41/48 (85%), Positives = 46/48 (95%)

Query: 121 GQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVY 168
           GQTPAEAEL++L+NAKKL++YGV LHPAKDSEGVDIMLGVCA GILVY
Sbjct: 1   GQTPAEAELHFLENAKKLALYGVDLHPAKDSEGVDIMLGVCAGGILVY 48

1 family FERM domain C-lobe. The protein 4.1 family includes four well-defined members: erythroid protein 4.1 (4.1R), the bestknown and characterized member, 4.1G (general), 4.1N (neuronal), and 4.1 B (brain). The less well understood 4.1O/FRMD3 is not a true member of this family and is not included in this hierarchy. Besides three highly conserved domains, FERM, SAB (spectrin and actin binding domain) and CTD (C-terminal domain), the proteins from this family contain several unique domains: U1, U2 and U3. FERM domains like other members of the FERM domain superfamily have a cloverleaf architecture with three distinct lobes (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The brain is a particularly rich source of protein 4.1 isoforms. The various 4.1R, 4.1G, 4.1N, and 4.1B mRNAs are all expressed in distinct patterns within the brain. It is likely that 4.1 proteins play important functional roles in the brain including motor coordination and spatial learning, postmitotic differentiation, and synaptic architecture and function. In addition they are found in nonerythroid, nonneuronal cells where they may play a general structural role in nuclear architecture and/or may interact with splicing factors. The FERM C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 113
>gnl|CDD|214604 smart00295, B41, Band 4 Back     alignment and domain information
>gnl|CDD|215882 pfam00373, FERM_M, FERM central domain Back     alignment and domain information
>gnl|CDD|241343 cd13189, FERM_C_PTPN4_PTPN3_like, Protein tyrosine phosphatase non-receptor proteins 3 and 4 (PTPN4 and PTPN3) FERM domain C-lobe Back     alignment and domain information
>gnl|CDD|241340 cd13186, FERM_C_NBL4_NBL5, Novel band 4 Back     alignment and domain information
>gnl|CDD|241347 cd13193, FERM_C_FARP1-like, FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins FERM domain Back     alignment and domain information
>gnl|CDD|214604 smart00295, B41, Band 4 Back     alignment and domain information
>gnl|CDD|241342 cd13188, FERM_C_PTPN14_PTPN21, Protein tyrosine phosphatase non-receptor proteins 14 and 21 (PTPN14 and 21) FERM domain Back     alignment and domain information
>gnl|CDD|241341 cd13187, FERM_C_PTPH13, Protein tyrosine phosphatase non-receptor 13 (PTPH13) FERM domain C-lobe Back     alignment and domain information
>gnl|CDD|241346 cd13192, FERM_C_FRMD3_FRMD5, FERM domain-containing protein 3 and 5 FERM (FRMD3 and 5) domain C-lobe Back     alignment and domain information
>gnl|CDD|241349 cd13195, FERM_C_MYLIP_IDOL, The E3 ubiquitin ligase myosin regulatory light chain-interacting protein (MYLIP; also called inducible degrader of the LDL receptor, IDOL) FERM domain C-lobe Back     alignment and domain information
>gnl|CDD|220216 pfam09380, FERM_C, FERM C-terminal PH-like domain Back     alignment and domain information
>gnl|CDD|241233 cd00836, FERM_C-lobe, FERM domain C-lobe Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 170
KOG3530|consensus 616 100.0
KOG3527|consensus 975 100.0
KOG0792|consensus 1144 99.97
KOG3529|consensus 596 99.93
smart00295207 B41 Band 4.1 homologues. Also known as ezrin/radix 99.89
PF00373126 FERM_M: FERM central domain; InterPro: IPR019748 T 99.89
KOG3531|consensus 1036 99.86
KOG4261|consensus 1003 99.56
KOG0248|consensus 936 99.26
KOG4371|consensus 1332 98.97
cd0083692 FERM_C FERM_C domain. The FERM_C domain is the thi 98.58
KOG3552|consensus 1298 98.22
cd0043585 ACBP Acyl CoA binding protein (ACBP) binds thiol e 98.15
PF0088787 ACBP: Acyl CoA binding protein; InterPro: IPR00058 97.94
PF0937980 FERM_N: FERM N-terminal domain ; InterPro: IPR0189 97.46
KOG3727|consensus664 97.42
PTZ0045890 acyl CoA binding protein; Provisional 97.36
KOG3531|consensus 1036 97.01
KOG4257|consensus 974 96.67
COG428187 ACB Acyl-CoA-binding protein [Lipid metabolism] 96.65
KOG3530|consensus 616 96.34
KOG0817|consensus142 96.31
KOG4371|consensus 1332 95.73
KOG4335|consensus558 92.32
KOG3878|consensus 469 90.72
KOG4335|consensus 558 87.36
KOG3527|consensus 975 84.97
>KOG3530|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.8e-43  Score=296.16  Aligned_cols=164  Identities=40%  Similarity=0.630  Sum_probs=154.7

Q ss_pred             CchhHHhh---hchhhcccCCCCCcccccCC-Ccc-eeeeeeCCCCchHHHHHHHH---------HhhccccccChhHHH
Q psy15745          4 SYVTYALL---GSYLVQSELGDYDQEEHKGN-PDY-LREFKFAPNQTPELEQRVME---------LHKTHKLPCSYVTYA   69 (170)
Q Consensus         4 ~~~~~~~~---g~~~Wl~~~~~~~~~q~~~~-~~~-~~~vkfy~~~~~~l~~~~tr---------di~~g~l~~~~~~~~   69 (170)
                      +||++.++   ....|||+.|+| .+|++.+ |+. +||||||+.+|..|.+++||         ||++|||+|+.++|+
T Consensus        50 DYFGLry~D~~~~~hWLD~tK~I-~kqvK~gppytL~~rVKfY~sdP~~Lree~tRYqfflQlKqDll~GRL~Cp~~~Aa  128 (616)
T KOG3530|consen   50 DYFGLRYQDSSKVRHWLDPTKSI-KKQVKIGPPYTLHLRVKFYPSDPNNLREENTRYQFFLQLKQDLLSGRLYCPFETAA  128 (616)
T ss_pred             eccceeeechhhcceecCcchhH-HHHhccCCCeEEEEEEEeccCChhhhhchhhHHHHHHHHHHHHhcCCCCCchhhHH
Confidence            45666655   567899999999 8999865 566 99999999999999999888         999999999999999


Q ss_pred             HHHHHHHHhhcCCCCccccCCCcCccccccCCCCCchHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCCcceeec
Q psy15745         70 LLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAK  149 (170)
Q Consensus        70 ~Laal~~Q~e~Gd~~~~~~~~~~~yl~~~~~lP~~~~~~~~~i~~~h~~~~G~s~~~A~~~yL~~~~~l~~YG~~~f~vk  149 (170)
                      +||||++|+|+|||++.+|+  ..|.++++|+|.+++++|.+|.+.|++++|+++++||+.||+.|++|+||||..|.|+
T Consensus       129 eLaAl~lQsELGDYn~~~Ht--~~yVSefRf~p~Qte~LE~~I~e~hK~~rGqspaqAElnyLnkAkwLemYGVDmH~V~  206 (616)
T KOG3530|consen  129 ELAALILQSELGDYNEEEHT--GGYVSEFRFLPNQTEELEERIFELHKELRGQSPAQAELNYLNKAKWLEMYGVDMHPVK  206 (616)
T ss_pred             HHHHHHHHHHhcCCChhhcc--ccceeeeEecccccHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhhhhccccceeee
Confidence            99999999999999999999  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeEEEeEcCCeeEEccC
Q psy15745        150 DSEGVDIMLGVCASGILVYSE  170 (170)
Q Consensus       150 d~~~~~~~lgI~~~Gi~v~~~  170 (170)
                      ..+|.+..||+++.||.||++
T Consensus       207 g~dg~ey~LGLTptGIlvf~g  227 (616)
T KOG3530|consen  207 GHDGSEYYLGLTPTGILVFEG  227 (616)
T ss_pred             cCCCceeEeeccCceEEEEEC
Confidence            999999999999999999974

>KOG3527|consensus Back     alignment and domain information
>KOG0792|consensus Back     alignment and domain information
>KOG3529|consensus Back     alignment and domain information
>smart00295 B41 Band 4 Back     alignment and domain information
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4 Back     alignment and domain information
>KOG3531|consensus Back     alignment and domain information
>KOG4261|consensus Back     alignment and domain information
>KOG0248|consensus Back     alignment and domain information
>KOG4371|consensus Back     alignment and domain information
>cd00836 FERM_C FERM_C domain Back     alignment and domain information
>KOG3552|consensus Back     alignment and domain information
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity Back     alignment and domain information
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters [] Back     alignment and domain information
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain Back     alignment and domain information
>KOG3727|consensus Back     alignment and domain information
>PTZ00458 acyl CoA binding protein; Provisional Back     alignment and domain information
>KOG3531|consensus Back     alignment and domain information
>KOG4257|consensus Back     alignment and domain information
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism] Back     alignment and domain information
>KOG3530|consensus Back     alignment and domain information
>KOG0817|consensus Back     alignment and domain information
>KOG4371|consensus Back     alignment and domain information
>KOG4335|consensus Back     alignment and domain information
>KOG3878|consensus Back     alignment and domain information
>KOG4335|consensus Back     alignment and domain information
>KOG3527|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query170
3bin_A283 Structure Of The Dal-1 And Tslc1 (372-383) Complex 2e-41
2he7_A283 Ferm Domain Of Epb41l3 (Dal-1) Length = 283 2e-41
3qij_A296 Primitive-Monoclinic Crystal Structure Of The Ferm 7e-39
1gg3_A279 Crystal Structure Of The Protein 4.1r Membrane Bind 7e-39
2rq1_A109 Solution Structure Of The 4.1r Ferm Alpha Lobe Doma 5e-25
1ni2_A296 Structure Of The Active Ferm Domain Of Ezrin Length 6e-13
1gc6_A297 Crystal Structure Of The Radixin Ferm Domain Comple 3e-12
2emt_A322 Crystal Structure Analysis Of The Radixin Ferm Doma 3e-12
2d2q_A310 Crystal Structure Of The Dimerized Radixin Ferm Dom 3e-12
2d10_A312 Crystal Structure Of The Radixin Ferm Domain Comple 3e-12
1j19_A317 Crystal Structure Of The Radxin Ferm Domain Complex 3e-12
2zpy_A312 Crystal Structure Of The Mouse Radxin Ferm Domain C 3e-12
3u8z_A300 Human Merlin Ferm Domain Length = 300 4e-12
1h4r_B314 Crystal Structure Of The Ferm Domain Of Merlin, The 5e-12
1h4r_A314 Crystal Structure Of The Ferm Domain Of Merlin, The 5e-12
1isn_A323 Crystal Structure Of Merlin Ferm Domain Length = 32 6e-12
1e5w_A 346 Structure Of Isolated Ferm Domain And First Long He 6e-12
1sgh_A297 Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptid 6e-12
1ef1_A294 Crystal Structure Of The Moesin Ferm DomainTAIL DOM 4e-11
2i1j_A 575 Moesin From Spodoptera Frugiperda At 2.1 Angstroms 1e-06
>pdb|3BIN|A Chain A, Structure Of The Dal-1 And Tslc1 (372-383) Complex Length = 283 Back     alignment and structure 
Iteration: 1

 Score =  164 bits (416), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 78/111 (70%), Positives = 95/111 (85%), Gaps = 2/111 (1%)
Query: 60  KLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTH 119
           +LPCS+VT ALLGSY VQSELGDYD +E     DY+ EF+FAPN T ELE +V+ELHK+H
Sbjct: 110 RLPCSFVTLALLGSYTVQSELGDYDPDE--CGSDYISEFRFAPNHTKELEDKVIELHKSH 167
Query: 120 KGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEGVDIMLGVCASGILVYSE 170
           +G TPAEAE+++L+NAKKLSMYGV LH AKDSEGV+IMLGVCASG+L+Y +
Sbjct: 168 RGMTPAEAEMHFLENAKKLSMYGVDLHHAKDSEGVEIMLGVCASGLLIYRD 218
>pdb|2HE7|A Chain A, Ferm Domain Of Epb41l3 (Dal-1) Length = 283 Back     alignment and structure
>pdb|3QIJ|A Chain A, Primitive-Monoclinic Crystal Structure Of The Ferm Domain Of Protein 4.1r Length = 296 Back     alignment and structure
>pdb|1GG3|A Chain A, Crystal Structure Of The Protein 4.1r Membrane Binding Domain Length = 279 Back     alignment and structure
>pdb|2RQ1|A Chain A, Solution Structure Of The 4.1r Ferm Alpha Lobe Domain Length = 109 Back     alignment and structure
>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin Length = 296 Back     alignment and structure
>pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed With Inositol-(1,4,5)-Triphosphate Length = 297 Back     alignment and structure
>pdb|2EMT|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain Complexed With Adhesion Molecule Psgl-1 Length = 322 Back     alignment and structure
>pdb|2D2Q|A Chain A, Crystal Structure Of The Dimerized Radixin Ferm Domain Length = 310 Back     alignment and structure
>pdb|2D10|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed With The Nherf-1 C-Terminal Tail Peptide Length = 312 Back     alignment and structure
>pdb|1J19|A Chain A, Crystal Structure Of The Radxin Ferm Domain Complexed With The Icam-2 Cytoplasmic Peptide Length = 317 Back     alignment and structure
>pdb|2ZPY|A Chain A, Crystal Structure Of The Mouse Radxin Ferm Domain Complexed With The Mouse Cd44 Cytoplasmic Peptide Length = 312 Back     alignment and structure
>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain Length = 300 Back     alignment and structure
>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The Neurofibromatosis 2 Tumor Suppressor Protein Length = 314 Back     alignment and structure
>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The Neurofibromatosis 2 Tumor Suppressor Protein Length = 314 Back     alignment and structure
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain Length = 323 Back     alignment and structure
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of Moesin Length = 346 Back     alignment and structure
>pdb|1SGH|A Chain A, Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptide Length = 297 Back     alignment and structure
>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN COMPLEX Length = 294 Back     alignment and structure
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms Resolution Length = 575 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query170
3ivf_A371 Talin-1; FERM domain, cell membrane, cell projecti 2e-40
3ivf_A371 Talin-1; FERM domain, cell membrane, cell projecti 9e-18
3qij_A296 Protein 4.1; cytoskeleton, structural genomics, st 4e-40
3qij_A296 Protein 4.1; cytoskeleton, structural genomics, st 7e-16
1h4r_A314 Merlin; FERM, neurofibromatosis, NF2, structural p 5e-37
4f7g_A222 Talin-1; alpha-helix bundle, integrin activation, 6e-37
4f7g_A222 Talin-1; alpha-helix bundle, integrin activation, 3e-15
2i1j_A 575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 8e-36
1ef1_A294 Moesin; membrane, FERM domain, tail domain, membra 2e-35
1mix_A206 Talin; focal adhesion, integrin binding, FERM doma 3e-35
1mix_A206 Talin; focal adhesion, integrin binding, FERM doma 5e-13
4dxa_B322 KREV interaction trapped protein 1; GTPase, FERM, 4e-28
3au4_A555 Myosin-X; protein-protein complex, motor protein c 3e-15
3pvl_A 655 Myosin VIIA isoform 1; protein complex, novel fold 8e-13
4eku_A 392 Protein-tyrosine kinase 2-beta; proline-rich tyros 4e-09
2al6_A 375 Focal adhesion kinase 1; transferase; 2.35A {Gallu 3e-05
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Length = 371 Back     alignment and structure
 Score =  138 bits (349), Expect = 2e-40
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 9/116 (7%)

Query: 60  KLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQ--TPELEQRVMELHK 117
             P S+        +  Q + G +++++HK    +L    F P +    + E+++ + HK
Sbjct: 198 SHPVSFDKACEFAGFQCQIQFGPHNEQKHK--AGFLDLKDFLPKEYVKQKGERKIFQAHK 255

Query: 118 THKGQTPAEAELNYLDNAKKLSMYGVVLHPAKDSEG-----VDIMLGVCASGILVY 168
                +  EA++ Y+  A+ L  YGV     K+        V  +LG+    ++  
Sbjct: 256 NCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRV 311
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Length = 371 Back     alignment and structure
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A Length = 296 Back     alignment and structure
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A Length = 296 Back     alignment and structure
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A Length = 314 Back     alignment and structure
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} Length = 222 Back     alignment and structure
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} Length = 222 Back     alignment and structure
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575 Back     alignment and structure
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A Length = 294 Back     alignment and structure
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B Length = 206 Back     alignment and structure
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B Length = 206 Back     alignment and structure
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} Length = 322 Back     alignment and structure
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A Length = 555 Back     alignment and structure
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus} Length = 655 Back     alignment and structure
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens} Length = 392 Back     alignment and structure
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A Length = 375 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query170
3qij_A296 Protein 4.1; cytoskeleton, structural genomics, st 100.0
1ef1_A294 Moesin; membrane, FERM domain, tail domain, membra 100.0
1h4r_A314 Merlin; FERM, neurofibromatosis, NF2, structural p 100.0
2i1j_A 575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 100.0
3ivf_A371 Talin-1; FERM domain, cell membrane, cell projecti 100.0
1mix_A206 Talin; focal adhesion, integrin binding, FERM doma 100.0
4f7g_A222 Talin-1; alpha-helix bundle, integrin activation, 99.97
4dxa_B322 KREV interaction trapped protein 1; GTPase, FERM, 99.97
2al6_A 375 Focal adhesion kinase 1; transferase; 2.35A {Gallu 99.95
3pvl_A 655 Myosin VIIA isoform 1; protein complex, novel fold 99.95
3au4_A555 Myosin-X; protein-protein complex, motor protein c 99.93
4eku_A 392 Protein-tyrosine kinase 2-beta; proline-rich tyros 99.87
2j0j_A 656 Focal adhesion kinase 1; cell migration, FERM, tra 99.8
3epy_A89 Acyl-COA-binding domain-containing protein 7; acyl 97.92
1hbk_A89 ACBP, acyl-COA binding protein; fatty acid metabol 97.86
2cb8_A87 Acyl-COA-binding protein; acyl-coenzyme A binding 97.86
2lbb_A96 Acyl COA binding protein; protein binding, structu 97.77
2cop_A109 Acyl-coenzyme A binding domain containing 6; acyl 97.68
2wh5_A106 Acyl-COA-binding domain-containing protein 4; alte 97.64
1st7_A86 ACBP, acyl-COA-binding protein; four helix bundle, 97.62
3flv_A119 Acyl-COA-binding domain-containing protein 5; lipi 97.57
3fp5_A106 Acyl-COA binding protein; ACBP, cacao disease, fat 97.5
2cqu_A116 Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA bi 97.38
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A Back     alignment and structure
Probab=100.00  E-value=2.9e-41  Score=272.40  Aligned_cols=164  Identities=51%  Similarity=0.804  Sum_probs=148.3

Q ss_pred             CchhHHhh---hchhhcccCCCCCcccccCCCcc-eeeeeeCCCCchHHHHHHHH---------HhhccccccChhHHHH
Q psy15745          4 SYVTYALL---GSYLVQSELGDYDQEEHKGNPDY-LREFKFAPNQTPELEQRVME---------LHKTHKLPCSYVTYAL   70 (170)
Q Consensus         4 ~~~~~~~~---g~~~Wl~~~~~~~~~q~~~~~~~-~~~vkfy~~~~~~l~~~~tr---------di~~g~l~~~~~~~~~   70 (170)
                      .+|++.+.   +..+|+++.+++ .+|+++.|+. +||+||||++|..+.++++|         ||++|++||+.++|++
T Consensus        57 ~~FgL~~~~~~~~~~wLd~~k~i-~~q~~~~~~~l~frvkfy~~~~~~l~~~~tr~l~ylQ~~~dil~G~~~c~~e~a~~  135 (296)
T 3qij_A           57 DYFGLAIWDNATSKTWLDSAKEI-KKQVRGVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLAL  135 (296)
T ss_dssp             GGEEEEEEEETTEEEECCTTSBH-HHHC---CCEEEEEESSCCSCGGGSSCHHHHHHHHHHHHHHHHHTSSCCCHHHHHH
T ss_pred             ceeEEEEEcCCCccchhccchhH-HHhcCCCCcEEEEEEEEeCCCchhccCHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence            34555543   568999999999 7788777887 99999999999877666665         9999999999999999


Q ss_pred             HHHHHHHhhcCCCCccccCCCcCccccccCCCCCchHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCCCcceeecC
Q psy15745         71 LGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHKTHKGQTPAEAELNYLDNAKKLSMYGVVLHPAKD  150 (170)
Q Consensus        71 Laal~~Q~e~Gd~~~~~~~~~~~yl~~~~~lP~~~~~~~~~i~~~h~~~~G~s~~~A~~~yL~~~~~l~~YG~~~f~vkd  150 (170)
                      ||||++|+++|||+++.+.  ++|++...++|.+.++|+++|.+.|++++|||+++|+.+||++|++||+||+++|.|++
T Consensus       136 LAAl~~Qae~Gd~~~~~~~--~~yl~~~~~~P~~~~~~~~~I~~~h~~~~g~s~~eA~~~yL~~a~~l~~yG~~~f~vk~  213 (296)
T 3qij_A          136 LGSYTIQSELGDYDPELHG--VDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKD  213 (296)
T ss_dssp             HHHHHHHHHHCSCCHHHHT--TCCCTTSCCSSSCCHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHTTSTTTTCEEEEEEC
T ss_pred             HHHHHHHHhcCCCCccccc--hhhCcHhhcCCcCHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhcccccCceEEEEEc
Confidence            9999999999999999998  89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEeEcCCeeEEccC
Q psy15745        151 SEGVDIMLGVCASGILVYSE  170 (170)
Q Consensus       151 ~~~~~~~lgI~~~Gi~v~~~  170 (170)
                      ..|.+++||||.+||.||++
T Consensus       214 ~~~~~~~LgV~~~Gi~v~~~  233 (296)
T 3qij_A          214 LEGVDIILGVCSSGLLVYKD  233 (296)
T ss_dssp             TTSCEEEEEECSSEEEEEET
T ss_pred             CCCCEEEEEECCCeEEEEeC
Confidence            99999999999999999974
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A Back     alignment and structure
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A Back     alignment and structure
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Back     alignment and structure
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Back     alignment and structure
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B Back     alignment and structure
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} Back     alignment and structure
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A Back     alignment and structure
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A Back     alignment and structure
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus} Back     alignment and structure
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A Back     alignment and structure
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens} Back     alignment and structure
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Back     alignment and structure
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1 Back     alignment and structure
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1 Back     alignment and structure
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A Back     alignment and structure
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis} Back     alignment and structure
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens} Back     alignment and structure
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens} Back     alignment and structure
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0 Back     alignment and structure
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 170
d1gg3a1106 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1 2e-26
d1gg3a1106 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1 2e-14
d1h4ra1111 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) 2e-23
d1mixa1114 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus 4e-23
d1mixa1114 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus 4e-12
d1ef1a1111 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [ 4e-22
d2al6a1123 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chic 2e-11
d1h4ra299 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) 3e-10
d1ef1a299 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) 4e-10
d1gg3a292 b.55.1.5 (A:188-279) Erythroid membrane protein 4. 9e-09
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Length = 106 Back     information, alignment and structure

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.2 bits (234), Expect = 2e-26
 Identities = 53/84 (63%), Positives = 67/84 (79%), Gaps = 2/84 (2%)

Query: 58  THKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVMELHK 117
             +LPCS+ T ALLGSY +QSELGDYD E H    DY+ +FK APNQT ELE++VMELHK
Sbjct: 25  AGRLPCSFATLALLGSYTIQSELGDYDPELHG--VDYVSDFKLAPNQTKELEEKVMELHK 82

Query: 118 THKGQTPAEAELNYLDNAKKLSMY 141
           +++  TPA+A+L +L+NAKKLSMY
Sbjct: 83  SYRSMTPAQADLEFLENAKKLSMY 106
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Length = 106 Back     information, alignment and structure
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 114 Back     information, alignment and structure
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 114 Back     information, alignment and structure
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 123 Back     information, alignment and structure
>d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId: 9606]} Length = 99 Back     information, alignment and structure
>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId: 9606]} Length = 99 Back     information, alignment and structure
>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Length = 92 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query170
d1gg3a1106 Erythroid membrane protein 4.1R {Human (Homo sapie 99.96
d1mixa1114 Talin {Chicken (Gallus gallus) [TaxId: 9031]} 99.94
d1ef1a1111 Moesin {Human (Homo sapiens) [TaxId: 9606]} 99.91
d1h4ra1111 Merlin {Human (Homo sapiens) [TaxId: 9606]} 99.91
d2al6a1123 Focal adhesion kinase 1 {Chicken (Gallus gallus) [ 99.78
d1gg3a381 Erythroid membrane protein 4.1R {Human (Homo sapie 98.35
d1h4ra384 Merlin {Human (Homo sapiens) [TaxId: 9606]} 98.1
d1hb6a_86 Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 98.03
d1ef1a384 Moesin {Human (Homo sapiens) [TaxId: 9606]} 98.0
d1hbka_89 Acyl-CoA binding protein {Plasmodium falciparum [T 97.68
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.7e-29  Score=172.38  Aligned_cols=97  Identities=56%  Similarity=0.899  Sum_probs=92.6

Q ss_pred             CCchHHHHHHHH---------HhhccccccChhHHHHHHHHHHHhhcCCCCccccCCCcCccccccCCCCCchHHHHHHH
Q psy15745         43 NQTPELEQRVME---------LHKTHKLPCSYVTYALLGSYLVQSELGDYDQEEHKGNPDYLREFKFAPNQTPELEQRVM  113 (170)
Q Consensus        43 ~~~~~l~~~~tr---------di~~g~l~~~~~~~~~Laal~~Q~e~Gd~~~~~~~~~~~yl~~~~~lP~~~~~~~~~i~  113 (170)
                      |+|..|.+++||         ||++|++||+.++|++||||++||++|||+++.+.  .+|++...++|.++++|+++|.
T Consensus         1 pdp~~L~~e~Tr~l~ylQlr~~i~~G~~~~~~~~a~~Laal~~Qae~GD~~~~~~~--~~yl~~~~~~p~~~~~~~~~I~   78 (106)
T d1gg3a1           1 PDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHG--VDYVSDFKLAPNQTKELEEKVM   78 (106)
T ss_dssp             SSGGGSSCHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTSCS--SCCGGGSCCCSSCCHHHHHHHH
T ss_pred             CCHHHhccHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhCCCCccccc--hhhhhHHhcCCccHHHHHHHHH
Confidence            467778888877         99999999999999999999999999999999998  8999999999999999999999


Q ss_pred             HHHHhccCCCHHHHHHHHHHHHhcCCCC
Q psy15745        114 ELHKTHKGQTPAEAELNYLDNAKKLSMY  141 (170)
Q Consensus       114 ~~h~~~~G~s~~~A~~~yL~~~~~l~~Y  141 (170)
                      +.|++++|||+++|+..||++|++||+|
T Consensus        79 ~~h~~l~G~s~~~A~~~fL~~~~~l~~Y  106 (106)
T d1gg3a1          79 ELHKSYRSMTPAQADLEFLENAKKLSMY  106 (106)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHHHHHSTTT
T ss_pred             HHHHHccCcCHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999998
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure