Psyllid ID: psy15749

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MFRIFKSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHRLNAIITS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHEEcEEEEEEEEcccccccccccccccccEEEEEccEEEccccccccccEEEEEccccccccEEEEEEEEcccEEEcccccccEEEcccccEEEEccccccccccccccccccccEEEEEEEEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccEEEEEEEEEEEcccccccccEEEEEccccccccEEEEEEEccccEEEEcccccccEEEccccEEEEccccccccccccccccccccEEEEEEEEEcccHHcccccccccccccccEEcc
Coil and Loop (DISEMBL)
MFRIFKSMLVGIPISITFCDSigyvarvdgtsmqpvfnpdrnhqdyvFLNRwiikgddiglqrgdivslvspkdpgqkIIKRIVGVEGDVVSTLDYksnvvkvpqghiwvegdhvghsmdsnmfgpvSMGLVTAKassiiwppsrwqylksevpvHRLNAIITS
Flexible Loop (DISEMBL)
MFRIFKSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIvslvspkdpgqkiiKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSrwqylksevpvhrlNAIITS
Low Complexity Region (SEG)
MFRIFKSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHRLNAIITS
Disordered region (IsUnstruct)
**RIFKSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHRLNAII**
Disordered Region (DISOPRED)
MFRIFKSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPV*********
Disordered Region (DISEMBL)
MFRIFKSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHRLNAIITS
Disordered Region (DISPRO)
MFRIFKSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSRWQYLKS*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFRIFKSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHRLNAIITS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q5PQ63	170	Mitochondrial inner membr	N/A	N/A	0.902	0.870	0.582	1e-47
Q6AZD4	183	Mitochondrial inner membr	yes	N/A	0.939	0.841	0.563	1e-46
Q2KI92	177	Mitochondrial inner membr	yes	N/A	0.945	0.875	0.559	2e-46
Q8BPT6	175	Mitochondrial inner membr	yes	N/A	0.945	0.885	0.547	4e-46
Q96T52	175	Mitochondrial inner membr	yes	N/A	0.920	0.862	0.558	1e-45
P46972	177	Mitochondrial inner membr	yes	N/A	0.871	0.807	0.413	4e-26
Q9UST2	180	Mitochondrial inner membr	yes	N/A	0.939	0.855	0.410	2e-25
Q96LU5	166	Mitochondrial inner membr	no	N/A	0.884	0.873	0.358	3e-18
Q9CQU8	166	Mitochondrial inner membr	no	N/A	0.810	0.801	0.354	2e-16
O74800	157	Mitochondrial inner membr	no	N/A	0.713	0.745	0.354	1e-14

>sp|Q5PQ63|IMP2L_XENLA Mitochondrial inner membrane protease subunit 2 OS=Xenopus laevis GN=immp2l PE=2 SV=1

 Score =  189 bits (479), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 88/151 (58%), Positives = 113/151 (74%), Gaps = 3/151 (1%)

Query: 8   MLVGIPISITFCDSIGYVARVDGTSMQPVFNPD-RNHQDYVFLNRWIIKGDDIGLQRGDI 66
             V +P+++TF D +  +ARV+G SMQP  NPD R   D V LNRW  +  D+  QRGDI
Sbjct: 16  FFVAVPVTVTFLDRVACIARVEGVSMQPSLNPDARGESDIVLLNRWRARNYDV--QRGDI 73

Query: 67  VSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMFGP 126
           VSLVSPK+P QKIIKR++ +EGD+V TL +K+  VKVP+GH+WVEGDH GHS DSN FGP
Sbjct: 74  VSLVSPKNPEQKIIKRVIALEGDIVKTLGHKNRYVKVPRGHVWVEGDHHGHSFDSNAFGP 133

Query: 127 VSMGLVTAKASSIIWPPSRWQYLKSEVPVHR 157
           VS+GL+ + A+ I+WPP+RWQ LK  +PV R
Sbjct: 134 VSLGLLHSHATHILWPPNRWQKLKPFLPVER 164

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space.
Xenopus laevis (taxid: 8355)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|Q6AZD4|IMP2L_DANRE Mitochondrial inner membrane protease subunit 2 OS=Danio rerio GN=immp2l PE=2 SV=1

 Score =  185 bits (470), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/158 (56%), Positives = 116/158 (73%), Gaps = 4/158 (2%)

Query: 2   FRIFKS-MLVGIPISITFCDSIGYVARVDGTSMQPVFNPD-RNHQDYVFLNRWIIKGDDI 59
           F+ F S   V +P+++T  D + YVARV+G SMQP  NPD  +  D V LNRW ++  + 
Sbjct: 11  FKAFVSGFFVAVPVTVTVLDRLAYVARVEGASMQPSLNPDGESSPDVVLLNRWSVR--NY 68

Query: 60  GLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSM 119
            +QRGDIVS++SPK+P QKIIKR++G+EGD + TL YK+  V+VP GH+W+EGDH GHS 
Sbjct: 69  HVQRGDIVSVLSPKNPQQKIIKRVIGIEGDFIKTLGYKNRYVRVPDGHLWIEGDHHGHSF 128

Query: 120 DSNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHR 157
           DSN FGPVS+GLV  +AS IIWPPSRWQ ++  VP  R
Sbjct: 129 DSNAFGPVSLGLVHGRASHIIWPPSRWQRIEPSVPPDR 166

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q2KI92|IMP2L_BOVIN Mitochondrial inner membrane protease subunit 2 OS=Bos taurus GN=IMMP2L PE=2 SV=1

 Score =  184 bits (468), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/159 (55%), Positives = 116/159 (72%), Gaps = 4/159 (2%)

Query: 2   FRIF-KSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQ-DYVFLNRWIIKGDDI 59
           F+ F K   V +P+++TF D +  VARV+G SMQP  NP  +   D V LN W ++  ++
Sbjct: 12  FKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVLLNHWKVRNFEV 71

Query: 60  GLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSM 119
             QRGDIVSLVSPK+P QKIIKR++ +EGD+V T+ +K+  VKVP+GHIWVEGDH GHS 
Sbjct: 72  --QRGDIVSLVSPKNPEQKIIKRVIALEGDIVKTMGHKNRYVKVPRGHIWVEGDHHGHSF 129

Query: 120 DSNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHRL 158
           DSN FGPVS+GL+ A A+ I+WPP RWQ L+S +P  RL
Sbjct: 130 DSNSFGPVSLGLLHAHATHILWPPKRWQKLESVLPPERL 168

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space. Known to process the nuclear encoded protein DIABLO.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q8BPT6|IMP2L_MOUSE Mitochondrial inner membrane protease subunit 2 OS=Mus musculus GN=Immp2l PE=2 SV=1

 Score =  183 bits (465), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 87/159 (54%), Positives = 117/159 (73%), Gaps = 4/159 (2%)

Query: 2   FRIF-KSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQ-DYVFLNRWIIKGDDI 59
           F+ F K   V +P+++TF D +  VARV+G+SMQP  NP  +   D V LN W ++  ++
Sbjct: 12  FKAFCKGFFVAVPVAVTFLDRVACVARVEGSSMQPSLNPGGSQSSDVVLLNHWKVRNFEV 71

Query: 60  GLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSM 119
             QRGDIVSLVSPK+P QKIIKR++ +EGD+V T+ +K+ +VKVP+GH+WVEGDH GHS 
Sbjct: 72  --QRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRLVKVPRGHMWVEGDHHGHSF 129

Query: 120 DSNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHRL 158
           DSN FGPVS+GL+ A A+ I+WPP RWQ L+S +P  R 
Sbjct: 130 DSNSFGPVSLGLLHAHATHILWPPERWQRLESVLPPERC 168

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space. Known to process the nuclear encoded protein DIABLO.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q96T52|IMP2L_HUMAN Mitochondrial inner membrane protease subunit 2 OS=Homo sapiens GN=IMMP2L PE=2 SV=1

 Score =  181 bits (460), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/154 (55%), Positives = 112/154 (72%), Gaps = 3/154 (1%)

Query: 6   KSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQ-DYVFLNRWIIKGDDIGLQRG 64
           K   V +P+++TF D +  VARV+G SMQP  NP  +   D V LN W ++  ++   RG
Sbjct: 17  KGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVLLNHWKVRNFEV--HRG 74

Query: 65  DIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMF 124
           DIVSLVSPK+P QKIIKR++ +EGD+V T+ +K+  VKVP+GHIWVEGDH GHS DSN F
Sbjct: 75  DIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRYVKVPRGHIWVEGDHHGHSFDSNSF 134

Query: 125 GPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHRL 158
           GPVS+GL+ A A+ I+WPP RWQ L+S +P  RL
Sbjct: 135 GPVSLGLLHAHATHILWPPERWQKLESVLPPERL 168

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space. Known to process the nuclear encoded protein DIABLO.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P46972|IMP2_YEAST Mitochondrial inner membrane protease subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IMP2 PE=1 SV=1

 Score =  117 bits (293), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 91/150 (60%), Gaps = 7/150 (4%)

Query: 3   RIFKSMLVGI---PISITFCDSIGYVARVDGTSMQPVFNPDRN--HQDYVFLNRWIIKGD 57
           R  ++ L+ I   P+ +T  +++ ++A+V GTSMQP  NP       D+V L ++ +K  
Sbjct: 9   RFLRNTLIAISWVPVLLTINNNVVHIAQVKGTSMQPTLNPQTETLATDWVLLWKFGVKNP 68

Query: 58  DIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVST-LDYKSNVVKVPQGHIWVEGDHVG 116
              L R DI+   +P +P +   KR+ G+  D + T   Y    V +P+GHIWVEGD+  
Sbjct: 69  S-NLSRDDIILFKAPTNPRKVYCKRVKGLPFDTIDTKFPYPKPQVNLPRGHIWVEGDNYF 127

Query: 117 HSMDSNMFGPVSMGLVTAKASSIIWPPSRW 146
           HS+DSN FGP+S GLV  KA +I+WPPSRW
Sbjct: 128 HSIDSNTFGPISSGLVIGKAITIVWPPSRW 157

Catalytic component of the mitochondrial inner membrane peptidase (IMP) complex. IMP catalyzes the removal of signal peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space. The two catalytic IMP subunits seem to have non-overlapping substrate specificities. IMP2 substrates include nuclear encoded CYB2, mitochondrially encoded COX2 and cytochrome c1. Required for the stability of IMP1.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q9UST2|IMP2L_SCHPO Mitochondrial inner membrane protease subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC336.13c PE=3 SV=1

 Score =  114 bits (286), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 102/168 (60%), Gaps = 14/168 (8%)

Query: 4   IFKSMLVGI----PISITFCDSIGYVARVDGTSMQPVFNPDRN--HQDYVFLNRWIIKGD 57
           +F   LVGI    P+ +     +  V  ++G SM+P FNP+ N   +D V L +W     
Sbjct: 14  VFFKNLVGITLWVPVLMFVEQHVVSVGTIEGRSMKPAFNPETNMLQRDRVLLWKW----- 68

Query: 58  DIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKS-NVVKVPQGHIWVEGDHVG 116
           +   +RGD+V L SP++P + ++KR++GVE D++ T   K  ++V VP+GH+WVEGD   
Sbjct: 69  NKDYKRGDVVILRSPENPEELLVKRVLGVEYDIMKTRPPKKLSLVPVPEGHVWVEGDEQF 128

Query: 117 HSMDSNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHRLNAIITS 164
           HS+DSN FGPVS GL+TAK  +I++P SR   +  E    R NA+  S
Sbjct: 129 HSIDSNKFGPVSTGLITAKVIAILFPFSRAGRIDHE--GFRKNAVFLS 174

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q96LU5|IMP1L_HUMAN Mitochondrial inner membrane protease subunit 1 OS=Homo sapiens GN=IMMP1L PE=2 SV=1

 Score = 91.3 bits (225), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 83/159 (52%), Gaps = 14/159 (8%)

Query: 9   LVGIPI---SITFC--DSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQR 63
           LVG  I    I  C  + +G V    G SM+P       + D VF     +     G+QR
Sbjct: 12  LVGYTIQYGCIAHCAFEYVGGVVMCSGPSMEPTIQ----NSDIVFAEN--LSRHFYGIQR 65

Query: 64  GDIVSLVSPKDPGQKIIKRIVGVEGDVVSTL---DYKSNVVKVPQGHIWVEGDHVGHSMD 120
           GDIV   SP DP   I KR++G+EGD + T    D+  +   VP GH+W+EGD++ +S D
Sbjct: 66  GDIVIAKSPSDPKSNICKRVIGLEGDKILTTSPSDFFKSHSYVPMGHVWLEGDNLQNSTD 125

Query: 121 SNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHRLN 159
           S  +GP+  GL+  +    IWP S + +L++    HR +
Sbjct: 126 SRCYGPIPYGLIRGRIFFKIWPLSDFGFLRASPNGHRFS 164

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space. Known to process the nuclear encoded protein DIABLO.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q9CQU8|IMP1L_MOUSE Mitochondrial inner membrane protease subunit 1 OS=Mus musculus GN=Immp1l PE=2 SV=1

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 76/144 (52%), Gaps = 11/144 (7%)

Query: 20  DSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKI 79
           + +G V    G SM+P       + D VF     +     G+QRGDIV   SP DP   I
Sbjct: 28  EYVGGVVMCSGPSMEPTIQ----NSDIVFAEN--LSRHFYGIQRGDIVIAKSPSDPKSNI 81

Query: 80  IKRIVGVEGDVVSTLDYKSNVVK----VPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAK 135
            KR++G+EGD + +    S+V K    VP GH+W+EGD++ +S DS  +GP+  GL+  +
Sbjct: 82  CKRVIGLEGDKILSTS-PSDVFKSRSYVPTGHVWLEGDNLQNSTDSRYYGPIPYGLIRGR 140

Query: 136 ASSIIWPPSRWQYLKSEVPVHRLN 159
               IWP S + +L+      R +
Sbjct: 141 IFFKIWPFSDFGFLRDSPNGQRFS 164

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space. Known to process the nuclear encoded protein DIABLO.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|O74800|IMP1_SCHPO Mitochondrial inner membrane protease subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=imp1 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 7/124 (5%)

Query: 25  VARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDI-GLQRGDIVSLVSPKDPGQKIIKRI 83
           V    G SM P  N   +  ++V L++  + G        GD+V    P D  Q + KRI
Sbjct: 28  VQMTSGPSMMPTLN---SGGEFVLLDK--LHGRFARSCSVGDVVVSAKPSDSKQHVCKRI 82

Query: 84  VGVEGDVVSTLDYKSNV-VKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWP 142
           +G+ GD +      SN  + +P GH+W+ GD++ HS+DS  +GPV MGL+ AK  + +WP
Sbjct: 83  IGMPGDTIYVDPTSSNKKITIPLGHVWLAGDNIAHSLDSRNYGPVPMGLIKAKVIARVWP 142

Query: 143 PSRW 146
              W
Sbjct: 143 HPHW 146

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
91078592	168	PREDICTED: similar to AGAP007398-PA [Tri	0.932	0.910	0.651	3e-57
125809120	169	GA10765 [Drosophila pseudoobscura pseudo	0.939	0.911	0.649	4e-54
195401707	169	GJ17277 [Drosophila virilis] gi|19414246	0.932	0.905	0.632	5e-54
357631746	164	hypothetical protein KGM_15428 [Danaus p	0.926	0.926	0.623	1e-53
170061180	192	mitochondrial inner membrane protease su	0.914	0.781	0.627	1e-53
195154032	169	GL17039 [Drosophila persimilis] gi|19411	0.939	0.911	0.643	2e-53
289741877	168	mitochondrial inner membrane protease su	0.926	0.904	0.632	3e-53
157118657	187	mitochondrial inner membrane protease su	0.926	0.812	0.625	3e-53
195029407	169	GH21989 [Drosophila grimshawi] gi|193903	0.939	0.911	0.624	3e-53
118778060	194	AGAP007398-PA [Anopheles gambiae str. PE	0.920	0.778	0.627	5e-53

>gi|91078592|ref|XP_972321.1| PREDICTED: similar to AGAP007398-PA [Tribolium castaneum] gi|270003806|gb|EFA00254.1| hypothetical protein TcasGA2_TC003086 [Tribolium castaneum]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 101/155 (65%), Positives = 130/155 (83%), Gaps = 2/155 (1%)

Query: 4   IFKSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQR 63
           + K++++G+PI +T  D++GYVARVDG SMQP  NP ++  DYVFLNRW +K  DI  +R
Sbjct: 6   LIKNIIIGVPIGVTILDTVGYVARVDGISMQPALNPHQSTTDYVFLNRWSVKSYDI--KR 63

Query: 64  GDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNM 123
           GDI+SL+SPKDP QKIIKR+VG++GDVV+TL YKS VV++P+GH WVEGDH GHSMDSN 
Sbjct: 64  GDIISLISPKDPTQKIIKRVVGIQGDVVATLSYKSTVVRIPEGHCWVEGDHTGHSMDSNN 123

Query: 124 FGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHRL 158
           FGPVS+GLVTAKAS I+WPPSRWQ+++S +P  R+
Sbjct: 124 FGPVSLGLVTAKASCIVWPPSRWQFIQSFLPASRV 158

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125809120|ref|XP_001360992.1| GA10765 [Drosophila pseudoobscura pseudoobscura] gi|54636165|gb|EAL25568.1| GA10765 [Drosophila pseudoobscura pseudoobscura]

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 102/157 (64%), Positives = 126/157 (80%), Gaps = 3/157 (1%)

Query: 2   FRIF-KSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIG 60
           FR F KS+L G+P+ ITF D +GYVARVDGTSMQP  NP  + +DYVFL RW     D+ 
Sbjct: 3   FRFFAKSLLYGLPLGITFFDCVGYVARVDGTSMQPALNPVADVRDYVFLLRWGNHNSDV- 61

Query: 61  LQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMD 120
            +RGDI+SLVSPKDPGQKIIKR+VG++GDVVST+ Y+  +V VPQGH WVEGDH GHSMD
Sbjct: 62  -ERGDIISLVSPKDPGQKIIKRVVGLQGDVVSTIGYRDPIVSVPQGHCWVEGDHTGHSMD 120

Query: 121 SNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHR 157
           SN FGPV++GL+TAKA +I+WPP RW+ L++E+P  R
Sbjct: 121 SNTFGPVALGLMTAKAVAIVWPPERWRLLENELPRRR 157

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195401707|ref|XP_002059454.1| GJ17277 [Drosophila virilis] gi|194142460|gb|EDW58866.1| GJ17277 [Drosophila virilis]

 Score =  215 bits (547), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 98/155 (63%), Positives = 122/155 (78%), Gaps = 2/155 (1%)

Query: 3   RIFKSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQ 62
           R  KS+L G+P+ ITF D +GYVARVDGTSMQP  NP    +DYVFL RW I    +  +
Sbjct: 5   RFCKSLLYGLPLGITFLDCVGYVARVDGTSMQPALNPVAEERDYVFLLRWGIHNSAV--E 62

Query: 63  RGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSN 122
           RGDI+SL+SPKDP QKIIKR+VG++GDVVSTL YK  +V+VP GH WVEGDH GHS+DSN
Sbjct: 63  RGDIISLISPKDPAQKIIKRVVGMQGDVVSTLGYKHEIVRVPDGHCWVEGDHTGHSLDSN 122

Query: 123 MFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHR 157
            FGPV+MGL++A+A +I+WPP RW+ LK+E+P  R
Sbjct: 123 TFGPVAMGLMSARAVAIVWPPERWRLLKNELPRRR 157

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357631746|gb|EHJ79215.1| hypothetical protein KGM_15428 [Danaus plexippus]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 96/154 (62%), Positives = 126/154 (81%), Gaps = 2/154 (1%)

Query: 4   IFKSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQR 63
           + KS+L G+PI ITF D++GYVARV+G SMQPV NP   + DYVFL+RW ++  D  ++R
Sbjct: 6   LCKSILFGVPIGITFLDTVGYVARVEGISMQPVLNPGTKNTDYVFLSRWSVR--DYQVKR 63

Query: 64  GDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNM 123
           GD++SLVSPKDP QKIIKR+V +EGDVV+TL YK+  VK+P+GH WVEGDH GH++DSN 
Sbjct: 64  GDVISLVSPKDPNQKIIKRVVALEGDVVNTLGYKNQYVKIPEGHCWVEGDHTGHTLDSNT 123

Query: 124 FGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHR 157
           FGPVS+GL+ AKA  I+WPPSRWQ L++++P +R
Sbjct: 124 FGPVSLGLINAKALCIVWPPSRWQNLEAKLPNNR 157

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170061180|ref|XP_001866123.1| mitochondrial inner membrane protease subunit 2 [Culex quinquefasciatus] gi|167879524|gb|EDS42907.1| mitochondrial inner membrane protease subunit 2 [Culex quinquefasciatus]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 96/153 (62%), Positives = 127/153 (83%), Gaps = 3/153 (1%)

Query: 6   KSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNH-QDYVFLNRWIIKGDDIGLQRG 64
           KS+L+ +P+ +TF D +GYVARV+G SMQP  NPD     DYVFL+RW ++  ++ ++RG
Sbjct: 8   KSLLLSVPVGVTFFDCVGYVARVEGISMQPALNPDGGPVTDYVFLSRWAVR--NMEVERG 65

Query: 65  DIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMF 124
           D++SL+SPKDPGQKIIKR+VG++GDV+STL YK   VKVP+GH WVEGDH G+S+DSN F
Sbjct: 66  DVISLISPKDPGQKIIKRVVGLQGDVISTLGYKQQFVKVPEGHCWVEGDHTGNSLDSNTF 125

Query: 125 GPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHR 157
           GPVS+GLVTA+A+S++WPP+RWQ LKS+VP  R
Sbjct: 126 GPVSLGLVTARATSVVWPPARWQSLKSQVPKTR 158

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195154032|ref|XP_002017927.1| GL17039 [Drosophila persimilis] gi|194113723|gb|EDW35766.1| GL17039 [Drosophila persimilis]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 101/157 (64%), Positives = 125/157 (79%), Gaps = 3/157 (1%)

Query: 2   FRIF-KSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIG 60
           FR F KS+L G+P+ ITF D +GYVARVDGTSMQP  NP  + +DYVFL RW     D+ 
Sbjct: 3   FRFFAKSLLYGLPLGITFFDCVGYVARVDGTSMQPALNPVADVRDYVFLLRWGNHNSDV- 61

Query: 61  LQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMD 120
            +RGDI+SLVSPKDP QKIIKR+VG++GDVVST+ Y+  +V VPQGH WVEGDH GHSMD
Sbjct: 62  -ERGDIISLVSPKDPSQKIIKRVVGLQGDVVSTIGYRDPIVSVPQGHCWVEGDHTGHSMD 120

Query: 121 SNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHR 157
           SN FGPV++GL+TAKA +I+WPP RW+ L++E+P  R
Sbjct: 121 SNTFGPVALGLMTAKAVAIVWPPERWRLLENELPRRR 157

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289741877|gb|ADD19686.1| mitochondrial inner membrane protease subunit IMP2 [Glossina morsitans morsitans]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 98/155 (63%), Positives = 127/155 (81%), Gaps = 3/155 (1%)

Query: 3   RIFKSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQ 62
           R  KS+L+GIP+ ITF D +GYVARVDG SMQP  NP+ +  DYVFL+RW ++  +I  +
Sbjct: 5   RFIKSVLLGIPVGITFLDCVGYVARVDGISMQPALNPNSD-TDYVFLSRWDVRSRNI--K 61

Query: 63  RGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSN 122
           RGDIVSL+SPKDP QKIIKR+VG++GDVVSTL YK +++++P+GH WVEGDH GHS+DSN
Sbjct: 62  RGDIVSLISPKDPTQKIIKRVVGLQGDVVSTLGYKQDILRIPEGHCWVEGDHTGHSLDSN 121

Query: 123 MFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHR 157
            FGPV++GL+TA+AS I+WPP RW+ L SE+P  R
Sbjct: 122 TFGPVAVGLMTARASLIVWPPERWRVLTSELPKRR 156

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157118657|ref|XP_001659200.1| mitochondrial inner membrane protease subunit [Aedes aegypti] gi|108883262|gb|EAT47487.1| AAEL001424-PB [Aedes aegypti]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 97/155 (62%), Positives = 127/155 (81%), Gaps = 3/155 (1%)

Query: 4   IFKSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRN-HQDYVFLNRWIIKGDDIGLQ 62
            FKS+L+ IP+ +TF D +GYVARV+G SMQP  NPD +   DYVFL+RW ++  ++ ++
Sbjct: 6   FFKSLLLSIPVGVTFFDCVGYVARVEGISMQPALNPDGSPATDYVFLSRWAVR--NMEVE 63

Query: 63  RGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSN 122
           RGD++SLVSPKDPGQKIIKR+VG++GDV+STL YK   VKVP+GH W+EGDH G+S+DSN
Sbjct: 64  RGDVISLVSPKDPGQKIIKRVVGLQGDVISTLGYKVPYVKVPEGHCWIEGDHTGNSLDSN 123

Query: 123 MFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHR 157
            FGPVS+GL+TA+A+ I+WPPSRWQ L S+VP  R
Sbjct: 124 SFGPVSLGLITARATQIVWPPSRWQTLHSQVPKTR 158

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195029407|ref|XP_001987564.1| GH21989 [Drosophila grimshawi] gi|193903564|gb|EDW02431.1| GH21989 [Drosophila grimshawi]

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 98/157 (62%), Positives = 124/157 (78%), Gaps = 3/157 (1%)

Query: 2   FRIF-KSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIG 60
           FR F KS+L G+P+ ITF D +GYVARVDGTSMQP  NP  + +DYVFL RW +    + 
Sbjct: 3   FRRFGKSLLYGLPLGITFLDCVGYVARVDGTSMQPALNPIADERDYVFLLRWGLHSSAV- 61

Query: 61  LQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMD 120
            +RGDI+SL SPKDP QKIIKR+VG++GDVVSTL YK  +V+VP GH WVEGDH GHS+D
Sbjct: 62  -ERGDIISLTSPKDPAQKIIKRVVGMQGDVVSTLGYKHEIVRVPDGHCWVEGDHTGHSLD 120

Query: 121 SNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHR 157
           SN FGPV++GL++A+A +I+WPP RW+ LK+E+P  R
Sbjct: 121 SNTFGPVALGLMSARAVAIVWPPERWRLLKNELPRRR 157

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118778060|ref|XP_308434.3| AGAP007398-PA [Anopheles gambiae str. PEST] gi|116132200|gb|EAA04666.4| AGAP007398-PA [Anopheles gambiae str. PEST]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 96/153 (62%), Positives = 120/153 (78%), Gaps = 2/153 (1%)

Query: 5   FKSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRG 64
            KS+L+G+P+ +T  D +GYVARV+G SMQP  NPD    DYVFL+RW ++  D+  QRG
Sbjct: 7   LKSLLLGVPVGVTLLDCVGYVARVEGVSMQPALNPDATVTDYVFLSRWAVRNMDV--QRG 64

Query: 65  DIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMF 124
           DI+SL+SPKDP QKIIKR+V ++GDV+STL YK   V VP+GH WVEGDH G+S+DSN F
Sbjct: 65  DIISLISPKDPTQKIIKRVVALQGDVISTLGYKLPYVTVPEGHCWVEGDHTGNSLDSNTF 124

Query: 125 GPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHR 157
           GPVS+GLVTA+A+ I+WPPSRWQ L S VP  R
Sbjct: 125 GPVSLGLVTARATQIVWPPSRWQQLPSTVPKTR 157

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
FB|FBgn0034535	171	CG11110 [Drosophila melanogast	0.939	0.900	0.605	1.9e-51
ZFIN|ZDB-GENE-040808-9	184	immp2l "IMP2 inner mitochondri	0.939	0.836	0.563	2.3e-46
UNIPROTKB|E1BVJ0	175	IMMP2L "Uncharacterized protei	0.920	0.862	0.571	6.2e-46
UNIPROTKB|Q2KI92	177	IMMP2L "Mitochondrial inner me	0.945	0.875	0.559	2.1e-45
MGI|MGI:2135611	175	Immp2l "IMP2 inner mitochondri	0.939	0.88	0.550	7.1e-45
UNIPROTKB|Q96T52	175	IMMP2L "Mitochondrial inner me	0.920	0.862	0.558	2.4e-44
UNIPROTKB|C9JQE1	157	IMMP2L "Mitochondrial inner me	0.536	0.560	0.636	1.2e-28
SGD|S000004638	177	IMP2 "Catalytic subunit of mit	0.871	0.807	0.413	4.5e-27
CGD|CAL0002703	162	IMP2 [Candida albicans (taxid:	0.829	0.839	0.426	4e-26
POMBASE|SPBC336.13c	180	SPBC336.13c "mitochondrial inn	0.939	0.855	0.416	5.2e-26

FB|FBgn0034535 CG11110 [Drosophila melanogaster (taxid:7227)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 95/157 (60%), Positives = 123/157 (78%)

Query:     2 FRIF-KSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIG 60
             FR F KS+L  +P+ +TF D +GYVARVDG SMQP  NP  + +DYVFL RW      + 
Sbjct:     3 FRFFGKSLLYALPLGVTFLDCVGYVARVDGISMQPALNPVPDEKDYVFLLRWGTHNSQV- 61

Query:    61 LQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMD 120
              +RGDI+SL+SPKDP QKIIKR+VG++GDVVSTL YK  +V+VP+GH WVEGDH GHSMD
Sbjct:    62 -ERGDIISLISPKDPAQKIIKRVVGLQGDVVSTLGYKHEIVRVPEGHCWVEGDHTGHSMD 120

Query:   121 SNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHR 157
             SN FGPV++GL++A+A +I+WPP RW+ L++E+P  R
Sbjct:   121 SNTFGPVALGLMSARAVAIVWPPERWRILENELPRRR 157

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

ZFIN|ZDB-GENE-040808-9 immp2l "IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 89/158 (56%), Positives = 115/158 (72%)

Query:     2 FRIFKS-MLVGIPISITFCDSIGYVARVDGTSMQPVFNPD-RNHQDYVFLNRWIIKGDDI 59
             F+ F S   V +P+++T  D + YVARV+G SMQP  NPD  +  D V LNRW ++   +
Sbjct:    12 FKAFVSGFFVAVPVTVTVLDRLAYVARVEGASMQPSLNPDGESSPDVVLLNRWSVRNYHV 71

Query:    60 GLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSM 119
               QRGDIVS++SPK+P QKIIKR++G+EGD + TL YK+  V+VP GH+W+EGDH GHS 
Sbjct:    72 --QRGDIVSVLSPKNPQQKIIKRVIGIEGDFIKTLGYKNRYVRVPDGHLWIEGDHHGHSF 129

Query:   120 DSNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHR 157
             DSN FGPVS+GLV  +AS IIWPPSRWQ ++  VP  R
Sbjct:   130 DSNAFGPVSLGLVHGRASHIIWPPSRWQRIEPSVPPDR 167

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=IEA

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|E1BVJ0 IMMP2L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 88/154 (57%), Positives = 111/154 (72%)

Query:     5 FKSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPD-RNHQDYVFLNRWIIKGDDIGLQR 63
             FK   V +P+++TF D +  VARV+G SMQP  NP  R   D V LN W I+  D+  QR
Sbjct:    16 FKGFFVAVPVTVTFLDRVACVARVEGASMQPSLNPGGRQASDVVLLNHWSIRNYDV--QR 73

Query:    64 GDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNM 123
             GDIVSLVSP++P QKIIKR++ +EGD++ T+ YK   VKVP GHIWVEGDH GHS DSN 
Sbjct:    74 GDIVSLVSPRNPEQKIIKRVIALEGDIIKTIGYKKKYVKVPHGHIWVEGDHHGHSFDSNA 133

Query:   124 FGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHR 157
             FGPVS+GL+ A+A+ I+WPP RWQ L+  +P  R
Sbjct:   134 FGPVSLGLLHARATHILWPPKRWQKLQPMLPPER 167

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0001541 "ovarian follicle development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0030728 "ovulation" evidence=IEA

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IEA

UNIPROTKB|Q2KI92 IMMP2L "Mitochondrial inner membrane protease subunit 2" [Bos taurus (taxid:9913)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 89/159 (55%), Positives = 116/159 (72%)

Query:     2 FRIF-KSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQ-DYVFLNRWIIKGDDI 59
             F+ F K   V +P+++TF D +  VARV+G SMQP  NP  +   D V LN W ++  ++
Sbjct:    12 FKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVLLNHWKVRNFEV 71

Query:    60 GLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSM 119
               QRGDIVSLVSPK+P QKIIKR++ +EGD+V T+ +K+  VKVP+GHIWVEGDH GHS 
Sbjct:    72 --QRGDIVSLVSPKNPEQKIIKRVIALEGDIVKTMGHKNRYVKVPRGHIWVEGDHHGHSF 129

Query:   120 DSNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHRL 158
             DSN FGPVS+GL+ A A+ I+WPP RWQ L+S +P  RL
Sbjct:   130 DSNSFGPVSLGLLHAHATHILWPPKRWQKLESVLPPERL 168

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IEA

GO:0030728 "ovulation" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001541 "ovarian follicle development" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

MGI|MGI:2135611 Immp2l "IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 87/158 (55%), Positives = 117/158 (74%)

Query:     2 FRIF-KSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQ-DYVFLNRWIIKGDDI 59
             F+ F K   V +P+++TF D +  VARV+G+SMQP  NP  +   D V LN W ++  ++
Sbjct:    12 FKAFCKGFFVAVPVAVTFLDRVACVARVEGSSMQPSLNPGGSQSSDVVLLNHWKVRNFEV 71

Query:    60 GLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSM 119
               QRGDIVSLVSPK+P QKIIKR++ +EGD+V T+ +K+ +VKVP+GH+WVEGDH GHS 
Sbjct:    72 --QRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRLVKVPRGHMWVEGDHHGHSF 129

Query:   120 DSNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHR 157
             DSN FGPVS+GL+ A A+ I+WPP RWQ L+S +P  R
Sbjct:   130 DSNSFGPVSLGLLHAHATHILWPPERWQRLESVLPPER 167

GO:0001541 "ovarian follicle development" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISA

GO:0006508 "proteolysis" evidence=IEA

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=IGI

GO:0007283 "spermatogenesis" evidence=IMP

GO:0008104 "protein localization" evidence=ISA

GO:0008152 "metabolic process" evidence=ISA;IMP

GO:0008233 "peptidase activity" evidence=IGI;ISA;IMP

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030728 "ovulation" evidence=IMP

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IGI

UNIPROTKB|Q96T52 IMMP2L "Mitochondrial inner membrane protease subunit 2" [Homo sapiens (taxid:9606)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 86/154 (55%), Positives = 112/154 (72%)

Query:     6 KSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQ-DYVFLNRWIIKGDDIGLQRG 64
             K   V +P+++TF D +  VARV+G SMQP  NP  +   D V LN W ++  ++   RG
Sbjct:    17 KGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVLLNHWKVRNFEV--HRG 74

Query:    65 DIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMF 124
             DIVSLVSPK+P QKIIKR++ +EGD+V T+ +K+  VKVP+GHIWVEGDH GHS DSN F
Sbjct:    75 DIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRYVKVPRGHIWVEGDHHGHSFDSNSF 134

Query:   125 GPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHRL 158
             GPVS+GL+ A A+ I+WPP RWQ L+S +P  RL
Sbjct:   135 GPVSLGLLHAHATHILWPPERWQKLESVLPPERL 168

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0001541 "ovarian follicle development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0030728 "ovulation" evidence=IEA

GO:0008233 "peptidase activity" evidence=ISS

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=ISS

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|C9JQE1 IMMP2L "Mitochondrial inner membrane protease subunit 2" [Homo sapiens (taxid:9606)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 56/88 (63%), Positives = 71/88 (80%)

Query:    71 SPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMG 130
             SPK+P QKIIKR++ +EGD+V T+ +K+  VKVP+GHIWVEGDH GHS DSN FGPVS+G
Sbjct:    63 SPKNPEQKIIKRVIALEGDIVRTIGHKNRYVKVPRGHIWVEGDHHGHSFDSNSFGPVSLG 122

Query:   131 LVTAKASSIIWPPSRWQYLKSEVPVHRL 158
             L+ A A+ I+WPP RWQ L+S +P  RL
Sbjct:   123 LLHAHATHILWPPERWQKLESVLPPERL 150

GO:0006508 "proteolysis" evidence=IEA

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

SGD|S000004638 IMP2 "Catalytic subunit of mitochondrial inner membrane peptidase complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 62/150 (41%), Positives = 91/150 (60%)

Query:     3 RIFKSMLVGI---PISITFCDSIGYVARVDGTSMQPVFNPDRNH--QDYVFLNRWIIKGD 57
             R  ++ L+ I   P+ +T  +++ ++A+V GTSMQP  NP       D+V L ++ +K  
Sbjct:     9 RFLRNTLIAISWVPVLLTINNNVVHIAQVKGTSMQPTLNPQTETLATDWVLLWKFGVKNP 68

Query:    58 DIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVST-LDYKSNVVKVPQGHIWVEGDHVG 116
                L R DI+   +P +P +   KR+ G+  D + T   Y    V +P+GHIWVEGD+  
Sbjct:    69 S-NLSRDDIILFKAPTNPRKVYCKRVKGLPFDTIDTKFPYPKPQVNLPRGHIWVEGDNYF 127

Query:   117 HSMDSNMFGPVSMGLVTAKASSIIWPPSRW 146
             HS+DSN FGP+S GLV  KA +I+WPPSRW
Sbjct:   128 HSIDSNTFGPISSGLVIGKAITIVWPPSRW 157

GO:0004175 "endopeptidase activity" evidence=IMP;IDA

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IEA;IPI

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=IEA;IMP

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

CGD|CAL0002703 IMP2 [Candida albicans (taxid:5476)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 61/143 (42%), Positives = 90/143 (62%)

Query:     9 LVGIPISITFCDSIGYVA-RVDGTSMQPVFNPDRNH--QDYVFLNRWIIKGDDIGLQRGD 65
             L   P+  +F +  GY   ++ G+SM P FNP  +   +D V + ++ IK     L RGD
Sbjct:    14 LTWFPVLYSFTNH-GYQPYQITGSSMTPTFNPGTSTMTKDIVLVQKYNIKKPG-SLSRGD 71

Query:    66 IVSLVSPKDPGQKIIKRIVGVEGDVV--STLDYKSNVVKVPQGHIWVEGDHVGHSMDSNM 123
             I+   SP++P + + KR+VG++GD++   +  Y  + VK+P+ H WVEGD+  HS+DSN 
Sbjct:    72 IIMFRSPENPEKLLTKRVVGIQGDIIRPKSPPYPKSEVKIPRNHFWVEGDNSFHSIDSNK 131

Query:   124 FGPVSMGLVTAKASSIIWPPSRW 146
             FGPVS GLV  K  +IIWPPSR+
Sbjct:   132 FGPVSQGLVIGKVVTIIWPPSRF 154

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=IEA

POMBASE|SPBC336.13c SPBC336.13c "mitochondrial inner membrane peptidase complex catalytic subunit 2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 70/168 (41%), Positives = 102/168 (60%)

Query:     4 IFKSMLVGI----PISITFCDSIGYVARVDGTSMQPVFNPDRN--HQDYVFLNRWIIKGD 57
             +F   LVGI    P+ +     +  V  ++G SM+P FNP+ N   +D V L +W     
Sbjct:    14 VFFKNLVGITLWVPVLMFVEQHVVSVGTIEGRSMKPAFNPETNMLQRDRVLLWKW---NK 70

Query:    58 DIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKS-NVVKVPQGHIWVEGDHVG 116
             D   +RGD+V L SP++P + ++KR++GVE D++ T   K  ++V VP+GH+WVEGD   
Sbjct:    71 DY--KRGDVVILRSPENPEELLVKRVLGVEYDIMKTRPPKKLSLVPVPEGHVWVEGDEQF 128

Query:   117 HSMDSNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHRLNAIITS 164
             HS+DSN FGPVS GL+TAK  +I++P SR   +  E    R NA+  S
Sbjct:   129 HSIDSNKFGPVSTGLITAKVIAILFPFSRAGRIDHEG--FRKNAVFLS 174

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0006508 "proteolysis" evidence=ISM

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=ISS

GO:0008236 "serine-type peptidase activity" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P46972	IMP2_YEAST	3, ., 4, ., 2, 1, ., -	0.4133	0.8719	0.8079	yes	N/A
Q96T52	IMP2L_HUMAN	3, ., 4, ., 2, 1, ., -	0.5584	0.9207	0.8628	yes	N/A
Q2KI92	IMP2L_BOVIN	3, ., 4, ., 2, 1, ., -	0.5597	0.9451	0.8757	yes	N/A
Q5PQ63	IMP2L_XENLA	3, ., 4, ., 2, 1, ., -	0.5827	0.9024	0.8705	N/A	N/A
Q8BPT6	IMP2L_MOUSE	3, ., 4, ., 2, 1, ., -	0.5471	0.9451	0.8857	yes	N/A
Q6AZD4	IMP2L_DANRE	3, ., 4, ., 2, 1, ., -	0.5632	0.9390	0.8415	yes	N/A
Q9UST2	IMP2L_SCHPO	3, ., 4, ., 2, 1, ., -	0.4107	0.9390	0.8555	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691
3rd Layer	3.4.21.89	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	164
cd06530	85	cd06530, S26_SPase_I, The S26 Type I signal peptid	4e-18
TIGR02227	163	TIGR02227, sigpep_I_bact, signal peptidase I, bact	5e-18
cd06462	84	cd06462, Peptidase_S24_S26, The S24, S26 LexA/sign	3e-08
TIGR02754	90	TIGR02754, sod_Ni_protease, nickel-type superoxide	1e-07
COG0681	166	COG0681, LepB, Signal peptidase I [Intracellular t	1e-05
pfam10502	138	pfam10502, Peptidase_S26, Signal peptidase, peptid	2e-04
pfam00717	69	pfam00717, Peptidase_S24, Peptidase S24-like	0.002
PRK10861	324	PRK10861, PRK10861, signal peptidase I; Provisiona	0.003

>gnl|CDD|119398 cd06530, S26_SPase_I, The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3

 Score = 73.8 bits (182), Expect = 4e-18
 Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 28/112 (25%)

Query: 25  VARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIV 84
              V G SM+P   P     D V +N+      +   +RGD+V   SP DPG+ IIKR++
Sbjct: 2   PVVVPGGSMEPTLQP----GDLVLVNKLSYGFREP--KRGDVVVFKSPGDPGKPIIKRVI 55

Query: 85  GVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKA 136
           G                       +V GD+  +S+DS  +GPV    +  K 
Sbjct: 56  GY----------------------FVLGDNRNNSLDSRYWGPVPEDDIVGKV 85

4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa) belong to this family and they process many proteins that enter the ER for retention or for export to the Golgi apparatus, secretory vesicles, plasma membranes or vacuole. An atypical member of the S26 SPase type I family is the TraF peptidase which has the remarkable activity of producing a cyclic protein of the Pseudomonas pilin system. The type I signal peptidases are unique serine proteases that utilize a serine/lysine catalytic dyad mechanism in place of the classical serine/histidine/aspartic acid catalytic triad mechanism. Length = 85

>gnl|CDD|233790 TIGR02227, sigpep_I_bact, signal peptidase I, bacterial type

 Score = 75.7 bits (187), Expect = 5e-18
 Identities = 41/149 (27%), Positives = 58/149 (38%), Gaps = 38/149 (25%)

Query: 26  ARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVG 85
            +V G SM+P         D + +N+          +RGDIV    P D     IKR++G
Sbjct: 23  YKVPGGSMEPTLKE----GDRILVNK--FAYGTSDPKRGDIVVFKDPDDNKNIYIKRVIG 76

Query: 86  VEGDVVS------------------------------TLDYKSNVVKVPQGHIWVEGDHV 115
           + GD V                               T DY    V VP GH +V GD+ 
Sbjct: 77  LPGDKVEFRDGKLYINGKKIDEPYLKPNGFLDTSEFNTTDYG--PVTVPPGHYFVLGDNR 134

Query: 116 GHSMDSNMFGPVSMGLVTAKASSIIWPPS 144
            +S+DS  FG V +  +  K S + +P  
Sbjct: 135 DNSLDSRYFGFVPIDDIIGKVSFVFYPFD 163

This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes [Protein fate, Protein and peptide secretion and trafficking]. Length = 163

>gnl|CDD|119396 cd06462, Peptidase_S24_S26, The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families

 Score = 48.0 bits (115), Expect = 3e-08
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 28/103 (27%)

Query: 24  YVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRI 83
           +  RV+G SM+P         D V +++          +RGDIV    P   G+  +KR+
Sbjct: 1   FALRVEGDSMEPTIPDG----DLVLVDKS-----SYEPKRGDIVVFRLPG--GELTVKRV 49

Query: 84  VGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMFGP 126
           +G+ G                +GH ++ GD+  +S DS + GP
Sbjct: 50  IGLPG----------------EGHYFLLGDN-PNSPDSRIDGP 75

The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein, thus playing a crucial role in the transport of proteins across membranes in all living organisms. All members in this superfamily are unique serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. Length = 84

>gnl|CDD|233997 TIGR02754, sod_Ni_protease, nickel-type superoxide dismutase maturation protease

 Score = 47.1 bits (112), Expect = 1e-07
 Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 23/113 (20%)

Query: 26  ARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVG 85
           A+V G SM P   P     D + +  W+ K   +    G++V +  P  P   IIKR+  
Sbjct: 1   AKVTGVSMSPTLPP----GDRIIVVPWL-KIFRV-PPIGNVVVVRHPLQPYGLIIKRLAA 54

Query: 86  VEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASS 138
           V+                    +++ GD+   S DS   GPV   L+  K   
Sbjct: 55  VD-----------------DNGLFLLGDNPKASTDSRQLGPVPRSLLLGKVLW 90

Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad [Cellular processes, Detoxification, Protein fate, Protein modification and repair]. Length = 90

>gnl|CDD|223753 COG0681, LepB, Signal peptidase I [Intracellular trafficking and secretion]

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 9/118 (7%)

Query: 25  VARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIV 84
              V   SM+P  N      D V + +         L+  DI+  V P      +IKR++
Sbjct: 33  PVVVPSGSMEPTLN----VGDRVLVKK--FSYGFGKLKVPDII--VLPAVVEGDLIKRVI 84

Query: 85  GVEGD-VVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIW 141
           G+ GD VV   D    V  +P+ +  VE D+  H +D  +    S           I 
Sbjct: 85  GLRGDIVVFKDDRLYVVPIIPRVYGLVEKDNGKHLVDVIVNANSSRVFGIITKKDYIK 142

Length = 166

>gnl|CDD|151062 pfam10502, Peptidase_S26, Signal peptidase, peptidase S26

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 36/115 (31%)

Query: 61  LQRGDIVSLVSPKD------------PGQKIIKRIVGVEGDVVSTLDYK--------SNV 100
            + GD+V++  P+              G  ++KR++ + G  V   D          S  
Sbjct: 22  PEVGDLVAVCPPEPAAFFAAERGYLPRGVPLLKRVLALPGQRVCIRDGLVTIDGVPVSAA 81

Query: 101 VK----------------VPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSI 139
           ++                +P+G +++       S DS  FGPV    +  +A  +
Sbjct: 82  LERDRKGRPLPPWQGCRVLPEGELFLMSVTSPDSFDSRYFGPVPASAIIGRARPV 136

This is a family of membrane signal serine endopeptidases which function in the processing of newly-synthesised secreted proteins. Peptidase S26 removes the hydrophobic, N-terminal, signal peptides as proteins are translocated across membranes. The active site residues take the form of a catalytic dyad that is Ser, Lys in subfamily S26A; the Ser is the nucleophile in catalysis, and the Lys is the general base. Length = 138

>gnl|CDD|216079 pfam00717, Peptidase_S24, Peptidase S24-like

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 12/65 (18%)

Query: 27 RVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGV 86
          RV G SM+P         D + ++    K  +   +RGDIV  V+  D  +  +KR++G+
Sbjct: 1  RVKGDSMEPTIPDG----DLLLVD----KTSEP--KRGDIV--VARLDGEEATVKRLIGL 48

Query: 87 EGDVV 91
           GD++
Sbjct: 49 PGDII 53

Length = 69

>gnl|CDD|182787 PRK10861, PRK10861, signal peptidase I; Provisional

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 62  QRGDIVSLVSPKDPGQKIIKRIVGVEGDVVS 92
           +RGDIV    P+DP    IKR+VG+ GD V+
Sbjct: 127 KRGDIVVFKYPEDPKLDYIKRVVGLPGDKVT 157

Length = 324

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
TIGR02227	163	sigpep_I_bact signal peptidase I, bacterial type.	100.0
KOG1568|consensus	174		100.0
KOG0171|consensus	176		100.0
PRK10861	324	signal peptidase I; Provisional	100.0
PRK13838	176	conjugal transfer pilin processing protease TraF;	99.93
TIGR02771	171	TraF_Ti conjugative transfer signal peptidase TraF	99.92
PRK13884	178	conjugal transfer peptidase TraF; Provisional	99.91
TIGR02754	90	sod_Ni_protease nickel-type superoxide dismutase m	99.89
PF10502	138	Peptidase_S26: Signal peptidase, peptidase S26 ; I	99.88
cd06530	85	S26_SPase_I The S26 Type I signal peptidase (SPase	99.85
TIGR02228	158	sigpep_I_arch signal peptidase I, archaeal type. T	99.77
COG0681	166	LepB Signal peptidase I [Intracellular trafficking	99.69
COG4959	173	TraF Type IV secretory pathway, protease TraF [Pos	99.57
PF00717	70	Peptidase_S24: Peptidase S24-like peptidase classi	99.31
cd06462	84	Peptidase_S24_S26 The S24, S26 LexA/signal peptida	99.27
COG2932	214	Predicted transcriptional regulator [Transcription	98.94
cd06529	81	S24_LexA-like Peptidase S24 LexA-like proteins are	98.84
KOG3342|consensus	180		98.76
PRK10276	139	DNA polymerase V subunit UmuD; Provisional	98.54
PRK00215	205	LexA repressor; Validated	98.47
TIGR00498	199	lexA SOS regulatory protein LexA. LexA acts as a h	98.43
PRK12423	202	LexA repressor; Provisional	98.35
COG1974	201	LexA SOS-response transcriptional repressors (RecA	97.79
COG0681	166	LepB Signal peptidase I [Intracellular trafficking	87.22
COG0234	96	GroS Co-chaperonin GroES (HSP10) [Posttranslationa	87.21
PTZ00414	100	10 kDa heat shock protein; Provisional	81.65
PRK00364	95	groES co-chaperonin GroES; Reviewed	81.46

>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type

Probab=100.00  E-value=3e-41  Score=256.12  Aligned_cols=135  Identities=30%  Similarity=0.520  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHHHhhceeEEEEEeCCCCCcccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEE
Q psy15749          4 IFKSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRI   83 (164)
Q Consensus         4 ~l~~~~~~i~i~~~i~~~~~~~~~V~g~SM~Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRV   83 (164)
                      |+..++++++++++++.|++..+.|+|+||+|||++|    |+++++|..+.  ..++++||+|+|+.|.++++.++|||
T Consensus         1 ~~~~~~~~~~~~~~i~~~~~~~~~v~g~SM~Ptl~~G----d~vlv~k~~~~--~~~~~rGDiVvf~~~~~~~~~~iKRV   74 (163)
T TIGR02227         1 LILSLLIAILLALLIRTFVFFPYKIPGGSMEPTLKEG----DRILVNKFAYG--TSDPKRGDIVVFKDPDDNKNIYVKRV   74 (163)
T ss_pred             CHHHHHHHHHHHHHHHhhEEEEEEECCcccccchhCC----CEEEEEEeEcC--CCCCCCCcEEEEecCCCCCceeEEEE
Confidence            5677888899999999999999999999999999999    99999999876  68999999999999877788999999


Q ss_pred             EeeCCCEEEeccCc----------------------------cceeeecCCeEEEecCCCCCCCCCCccccccCCCeEEE
Q psy15749         84 VGVEGDVVSTLDYK----------------------------SNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAK  135 (164)
Q Consensus        84 ialpGD~v~~~~~~----------------------------~~~~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gk  135 (164)
                      +|+|||+|++++..                            ....+||+|+|||+|||+++|.|||+||+|++++|+||
T Consensus        75 ig~pGd~v~i~~~~l~vNg~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~g~~fvlGDnr~~S~DSR~~G~V~~~~I~Gk  154 (163)
T TIGR02227        75 IGLPGDKVEFRDGKLYINGKKIDEPYLKPNGSLDTSGFNTTDFKPVTVPPGHYFVLGDNRDNSLDSRYFGFVPIDDIIGK  154 (163)
T ss_pred             EecCCCEEEEECCEEEECCEECcccccccccccccccccccccCceEECCCCEEEECCCCCCCcccCCcCcCCHHHeEEE
Confidence            99999999997621                            12358999999999999999999999999999999999


Q ss_pred             EEEEEeCCC
Q psy15749        136 ASSIIWPPS  144 (164)
Q Consensus       136 v~~~~~p~~  144 (164)
                      |.+++||++
T Consensus       155 ~~~~~~p~~  163 (163)
T TIGR02227       155 VSFVFYPFD  163 (163)
T ss_pred             EEEEECCCC
Confidence            999999985

A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.

>KOG1568|consensus

Probab=100.00  E-value=5.2e-39  Score=238.98  Aligned_cols=154  Identities=49%  Similarity=0.829  Sum_probs=137.6

Q ss_pred             HHHHHHHHHH--HHHHHhhceeEEEEEeCCCCCcccCCCCCC--ceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcce
Q psy15749          4 IFKSMLVGIP--ISITFCDSIGYVARVDGTSMQPVFNPDRNH--QDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKI   79 (164)
Q Consensus         4 ~l~~~~~~i~--i~~~i~~~~~~~~~V~g~SM~Ptl~~g~~~--~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~   79 (164)
                      +.+.+..++.  +.+.+...+.....|.|.||+|+++++.++  .|+||++|+...  ...+.|||+|+|.+|.++++.+
T Consensus        10 ~~ksl~~s~~~~v~~t~~DrV~~va~v~G~smqPtlnP~~~~~~~d~Vll~k~~v~--n~~~~rGDiVvl~sP~~p~~~~   87 (174)
T KOG1568|consen   10 FEKSLTGSLKWHVLLTFSDRVVHVAQVYGSSMQPTLNPTMNTNEKDTVLLRKWNVK--NRKVSRGDIVVLKSPNDPDKVI   87 (174)
T ss_pred             HHhceeeeeeeheeeeeeeeEEEEeEEecCcCCCccCCCcccccccEEEEEeeccc--cceeccCCEEEEeCCCChhhee
Confidence            3444444444  445666778888999999999999999863  399999999766  5678999999999999999999


Q ss_pred             EEEEEeeCCCEEEeccCccceeeecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEEeCCCccccCCcCCCCCcee
Q psy15749         80 IKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSRWQYLKSEVPVHRLN  159 (164)
Q Consensus        80 iKRVialpGD~v~~~~~~~~~~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~~p~~~~~~~~~~~~~~~~~  159 (164)
                      ||||+|+|||.+...++..+.+.+|+|||||+|||..+|+|||.||||+...|.|||++++||+.|++.+.+..+..|++
T Consensus        88 iKRv~alegd~~~t~~~k~~~v~vpkghcWVegDn~~hs~DSntFGPVS~gli~grai~ilwpP~R~~~~~~~~~~~~~~  167 (174)
T KOG1568|consen   88 IKRVAALEGDIMVTEDEKEEPVVVPKGHCWVEGDNQKHSYDSNTFGPVSTGLIVGRAIYILWPPVRWQRLDKESPGRRVP  167 (174)
T ss_pred             eeeeecccccEeccCCCCCCceecCCCcEEEecCCcccccccCccCCcchhheeeeEEEEEcChHHhhhhcccCCccccc
Confidence            99999999999999888999999999999999999999999999999999999999999999999999999999888765

>KOG0171|consensus

Probab=100.00  E-value=2.5e-37  Score=230.31  Aligned_cols=133  Identities=36%  Similarity=0.599  Sum_probs=118.4

Q ss_pred             HHHHHHhhceeEEEEEeCCCCCcccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEE
Q psy15749         13 PISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVS   92 (164)
Q Consensus        13 ~i~~~i~~~~~~~~~V~g~SM~Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~   92 (164)
                      .++.....+++++...+|.||+||++++   +|+++.+|+++.  ++++++||||+++.|.++.+.++|||+|+|||.++
T Consensus        23 ~f~h~t~~yl~e~~~~~gpSM~PTl~~~---gd~l~aEkls~~--f~~~~~gDIVi~~sP~~~~~~~cKRIva~eGD~v~   97 (176)
T KOG0171|consen   23 AFTHVTHEYLGEFVMCSGPSMEPTLHDG---GDVLLAEKLSYR--FRKPQVGDIVIAKSPPDPKEHICKRIVAMEGDLVE   97 (176)
T ss_pred             HHHHHHHHHhcceeeccCCCcCceecCC---CcEEehhhhhHh--hcCCCCCCEEEEeCCCCchhhhhheeeccCCceEE
Confidence            3344456689999999999999999988   478888999999  89999999999999999999999999999999888


Q ss_pred             eccCcc----------ceeeecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEEeCCCccccCC
Q psy15749         93 TLDYKS----------NVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSRWQYLK  150 (164)
Q Consensus        93 ~~~~~~----------~~~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~~p~~~~~~~~  150 (164)
                      +.....          .+..||+||+||+|||+++|.|||+|||+|.++|+||+++++||.++++.+.
T Consensus        98 v~~~~~~~n~~~e~~~~~i~VP~GhVfv~GDN~~nS~DSr~yGplP~glI~gRvv~r~Wp~s~~~~~~  165 (176)
T KOG0171|consen   98 VHDGPLVVNDLVEKFSTPIRVPEGHVFVEGDNRNNSLDSRNYGPLPMGLIQGRVVFRIWPPSRVSGLI  165 (176)
T ss_pred             EecCCcccchhhhhccceeeccCceEEEecCCCCCcccccccCCCchhheeeeEEEEecCchhcceee
Confidence            765321          3469999999999999999999999999999999999999999999988764

>PRK10861 signal peptidase I; Provisional

Probab=100.00  E-value=1.4e-36  Score=251.34  Aligned_cols=138  Identities=26%  Similarity=0.332  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHHHHhhceeEEEEEeCCCCCcccCCCCCCceEEEEEeeeccC----------CCCCcceeeEEEEecC
Q psy15749          3 RIFKSMLVGIPISITFCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKG----------DDIGLQRGDIVSLVSP   72 (164)
Q Consensus         3 ~~l~~~~~~i~i~~~i~~~~~~~~~V~g~SM~Ptl~~g~~~~d~vlv~r~~~~~----------~~~~~~rGDiVvf~~p   72 (164)
                      ++++.++++++++++++.|+++++.|+|+||+|||..|    |+++++|++|..          ...+++|||||+|+.|
T Consensus        62 ~~~~~~~~~l~i~~~ir~fv~~~~~Ips~SM~PTL~~G----D~IlVnK~~yg~~~p~~~~~~~~~~~p~RGDIVVF~~P  137 (324)
T PRK10861         62 ETGASVFPVLAIVLIVRSFIYEPFQIPSGSMMPTLLIG----DFILVEKFAYGIKDPITQTTLIETGHPKRGDIVVFKYP  137 (324)
T ss_pred             HHHHHHHHHHhHHHHHHhhEEEEEEECCCcCcCcccCC----CEEEEEEeecCccCccccccccccCCCCCCCEEEEecC
Confidence            56667778888999999999999999999999999999    999999998752          1257999999999999


Q ss_pred             CCCCcceEEEEEeeCCCEEEec--c------Cc-----------------------------------------------
Q psy15749         73 KDPGQKIIKRIVGVEGDVVSTL--D------YK-----------------------------------------------   97 (164)
Q Consensus        73 ~~~~~~~iKRVialpGD~v~~~--~------~~-----------------------------------------------   97 (164)
                      .+++..+||||+|+|||+|+++  +      .+                                               
T Consensus       138 ~~~~~~yIKRVIGlPGD~I~~~~~~~~l~iNg~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (324)
T PRK10861        138 EDPKLDYIKRVVGLPGDKVTYDPVSKEVTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFQVPLNET  217 (324)
T ss_pred             CCCCCcEEEEeeecCCcEEEEEeCCCEEEEcCcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8888899999999999999985  1      00                                               


Q ss_pred             -----------------------------------------cceeeecCCeEEEecCCCCCCCCCCccccccCCCeEEEE
Q psy15749         98 -----------------------------------------SNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKA  136 (164)
Q Consensus        98 -----------------------------------------~~~~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv  136 (164)
                                                               ...++||+|+||++|||+++|.||||||+||.++|+|||
T Consensus       218 ~~~~~~~~~~~E~l~~~~h~i~~~~~~~~~~~~~~~~~~~~~~~~~vp~g~yf~mgdnr~~S~DSRy~G~Vp~~~i~G~a  297 (324)
T PRK10861        218 KENGIRLSERKETLGDVTHRILTVPGAQDQVGMYYQQPGQPLATWVVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGKA  297 (324)
T ss_pred             ccccccceeEEEecCCccceeeecCCcccccccccccCCCcCceEEECCCeEEEeCCCCCCCcccCcccccCHHHcEEEE
Confidence                                                     012389999999999999999999999999999999999


Q ss_pred             EEEEeCCC
Q psy15749        137 SSIIWPPS  144 (164)
Q Consensus       137 ~~~~~p~~  144 (164)
                      ..++|+++
T Consensus       298 ~~i~~s~d  305 (324)
T PRK10861        298 TAIWMSFE  305 (324)
T ss_pred             EEEEEEcC
Confidence            99999987

>PRK13838 conjugal transfer pilin processing protease TraF; Provisional

Probab=99.93  E-value=6.1e-25  Score=168.59  Aligned_cols=93  Identities=25%  Similarity=0.324  Sum_probs=75.9

Q ss_pred             eEEEEEeeeccCCCCCcceeeEEEEecCCCC-------------------CcceEEEEEeeCCCEEEeccC---------
Q psy15749         45 DYVFLNRWIIKGDDIGLQRGDIVSLVSPKDP-------------------GQKIIKRIVGVEGDVVSTLDY---------   96 (164)
Q Consensus        45 d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~-------------------~~~~iKRVialpGD~v~~~~~---------   96 (164)
                      +.+.+.++.+.  ..++++||+|+|+.|+++                   ...++|||+|+|||+|++++.         
T Consensus        37 ~pig~y~~~~~--~~~~~rGDiVvf~~P~~~~~~~a~~r~yl~~g~~p~~~~~~iKRViglpGD~V~i~~~v~iNg~~~~  114 (176)
T PRK13838         37 EPLGLWRIEAL--DRPVAVGDLVFICPPETAAFREARERGYLRRGLCPGGFAPLIKTVAALAGQRVEIGGSVSIDGRPLP  114 (176)
T ss_pred             CEEEEEEEecc--CCCCCCCcEEEEECCchhhhhhhhhcccccccccccCCCceEEEEEEeCCcEEEECCEEEECCEEcc
Confidence            66677776655  678999999999988543                   135999999999999998740         


Q ss_pred             -------c--------cceeeecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEE
Q psy15749         97 -------K--------SNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSII  140 (164)
Q Consensus        97 -------~--------~~~~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~  140 (164)
                             .        ....++|+|+|||+||| ++|+||||||+|++++|+|+|.-.+
T Consensus       115 ~~~~~~~~~~g~~l~~~~~~~vp~g~~fvlgd~-~~S~DSRy~G~V~~~~I~G~a~pi~  172 (176)
T PRK13838        115 SSSVRRRDGEGRPLTPFPGGVVPPGHLFLHSSF-AGSYDSRYFGPVPASGLLGLARPVL  172 (176)
T ss_pred             ccccccccccCCcCCCCCccCcCCCeEEEECCC-CCCCcccccCcccHHHeEEEEEEEE
Confidence                   0        01347999999999998 5899999999999999999997554

>TIGR02771 TraF_Ti conjugative transfer signal peptidase TraF

Probab=99.92  E-value=4.1e-24  Score=163.34  Aligned_cols=105  Identities=24%  Similarity=0.323  Sum_probs=80.8

Q ss_pred             hceeEEEEEeCCCCCcccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCC-------------------cceE
Q psy15749         20 DSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPG-------------------QKII   80 (164)
Q Consensus        20 ~~~~~~~~V~g~SM~Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~-------------------~~~i   80 (164)
                      .|...+....++||...+.        . ..+      ..+++|||+|+|+.|.++.                   ..++
T Consensus        21 ~~~~~~~~N~T~S~P~g~Y--------~-~~~------~~~~~rGDiVvf~~p~~~~~~~~~~rg~l~~g~~p~~~~~~v   85 (171)
T TIGR02771        21 LYCVGARINTTKSLPLGLY--------W-TTS------SKPVERGDYVVFCPPDNPQFEEARERGYLREGLCPGGFGPLL   85 (171)
T ss_pred             cceeeEEEECCCCCcceEE--------E-eCC------CCCCCCCcEEEEeCCCchhhhchhhcCcccccccCcCccceE
Confidence            3444455666677665542        2 222      5689999999999885432                   2799


Q ss_pred             EEEEeeCCCEEEeccCc-------------------------cceeeecCCeEEEecCCCCCCCCCCccccccCCCeEEE
Q psy15749         81 KRIVGVEGDVVSTLDYK-------------------------SNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAK  135 (164)
Q Consensus        81 KRVialpGD~v~~~~~~-------------------------~~~~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gk  135 (164)
                      |||+|+|||+|++++..                         ....++|+| ||++|||+++|.||||||+|++++|+||
T Consensus        86 KRViglpGD~V~i~~~~v~INg~~~~~~~~~~~~~~g~~l~~~~~~~vp~g-yf~lgdn~~~S~DSRy~G~V~~~~IiGk  164 (171)
T TIGR02771        86 KRVLGLPGDRVTVRADVVAINGQLLPYSKPLATDSSGRPLPPFPEGVIPPG-FFVVHDTSPTSFDSRYFGPISREQVIGR  164 (171)
T ss_pred             EEEEEeCCCEEEEECCEEEECCEEcccccccccccCCCccccCCCcEECCC-EEEECCCCCCCCcccccceecHHHeEEE
Confidence            99999999999997620                         124789999 9999999999999999999999999999


Q ss_pred             EEEEE
Q psy15749        136 ASSII  140 (164)
Q Consensus       136 v~~~~  140 (164)
                      |.-.+
T Consensus       165 ~~pl~  169 (171)
T TIGR02771       165 VKPLF  169 (171)
T ss_pred             EEEeE
Confidence            97543

This protein is found in apparent operons encoding elements of conjugative transfer systems. This family is homologous to a broader family of signal (leader) peptidases such as lepB. This family is present in both Ti-type and I-type conjugative systems.

>PRK13884 conjugal transfer peptidase TraF; Provisional

Probab=99.91  E-value=1.4e-23  Score=161.35  Aligned_cols=82  Identities=22%  Similarity=0.404  Sum_probs=69.0

Q ss_pred             CCcceeeEEEEecCCCC-------------------CcceEEEEEeeCCCEEEeccCc----------------------
Q psy15749         59 IGLQRGDIVSLVSPKDP-------------------GQKIIKRIVGVEGDVVSTLDYK----------------------   97 (164)
Q Consensus        59 ~~~~rGDiVvf~~p~~~-------------------~~~~iKRVialpGD~v~~~~~~----------------------   97 (164)
                      .++++||+|+|+.|++.                   ...++|||+|+|||+|++++..                      
T Consensus        49 ~~~~~Gd~V~f~~p~~~~~~~a~~rgyl~~g~~p~~~~~liKRVva~pGD~V~~~~~~l~VNG~~v~~~~~~~~d~~g~~  128 (178)
T PRK13884         49 APVEKGAYVLFCPPQRGVFDDAKERGYIGAGFCPGGYGYMMKRVLAAKGDAVSVTDDGVRVNGELLPLSKPILADGAGRP  128 (178)
T ss_pred             CCCCCCCEEEEeCCchHHHHHHHhCCccccCcCCCCCCceEEEEEeeCCcEEEEECCEEEECCEEccccccccccccCCc
Confidence            47899999999987531                   1379999999999999997620                      


Q ss_pred             -----cceeeecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEE
Q psy15749         98 -----SNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSII  140 (164)
Q Consensus        98 -----~~~~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~  140 (164)
                           ...+++|+|+||++|||+++|+||||||+|++++|+|++.-.+
T Consensus       129 l~~~~~~~~~lp~g~~fvlgd~~~~S~DSRYfG~V~~~~I~G~~~Pl~  176 (178)
T PRK13884        129 LPRYQANSYTLGESELLLMSDVSATSFDGRYFGPINRSQIKTVIRPVI  176 (178)
T ss_pred             ccccCCCceEECCCEEEEECCCCCCCCcccccCcccHHHEEEEEEEeE
Confidence                 1124899999999999999999999999999999999997543

>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease

Probab=99.89  E-value=1.2e-22  Score=139.62  Aligned_cols=89  Identities=30%  Similarity=0.484  Sum_probs=77.8

Q ss_pred             EEeCCCCCcccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCccceeeecCC
Q psy15749         27 RVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQG  106 (164)
Q Consensus        27 ~V~g~SM~Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~~~~~~vp~~  106 (164)
                      .|.|+||+|+|++|    |++++++....  ...+++||+|+|+.|.+++..++||+++++                 ++
T Consensus         2 ~V~g~SM~P~l~~G----D~vlv~~~~~~--~~~~~~Gdivv~~~~~~~~~~~vkRv~~~~-----------------~~   58 (90)
T TIGR02754         2 KVTGVSMSPTLPPG----DRIIVVPWLKI--FRVPPIGNVVVVRHPLQPYGLIIKRLAAVD-----------------DN   58 (90)
T ss_pred             EeeCCCccCccCCC----CEEEEEEcccc--CCCCCCCeEEEEecCCCCcceEEEEeeEEc-----------------CC
Confidence            68999999999999    99999985443  445678999999998766789999998864                 45


Q ss_pred             eEEEecCCCCCCCCCCccccccCCCeEEEEEE
Q psy15749        107 HIWVEGDHVGHSMDSNMFGPVSMGLVTAKASS  138 (164)
Q Consensus       107 ~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~  138 (164)
                      ++|++|||+..|.|||++|+|+..+|+|||++
T Consensus        59 ~~~l~~dN~~~~~d~~~~g~v~~~~I~G~v~~   90 (90)
T TIGR02754        59 GLFLLGDNPKASTDSRQLGPVPRSLLLGKVLW   90 (90)
T ss_pred             eEEEeCCCCCCCCcccccCCCcHHHEEEEEEC
Confidence            78999999999999999999999999999853

Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see Pfam model pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad.

>PF10502 Peptidase_S26: Signal peptidase, peptidase S26 ; InterPro: IPR019533 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.88  E-value=8.3e-24  Score=156.55  Aligned_cols=82  Identities=38%  Similarity=0.611  Sum_probs=32.3

Q ss_pred             CCcceeeEEEEecCCC------------CCcceEEEEEeeCCCEEEeccCc------------------------cceee
Q psy15749         59 IGLQRGDIVSLVSPKD------------PGQKIIKRIVGVEGDVVSTLDYK------------------------SNVVK  102 (164)
Q Consensus        59 ~~~~rGDiVvf~~p~~------------~~~~~iKRVialpGD~v~~~~~~------------------------~~~~~  102 (164)
                      ..+++||+|+|+.|..            .+..++|||+|+|||+|++++.+                        ....+
T Consensus        20 ~~~~rGd~V~f~~p~~~~~~~~~~gy~~~~~~~iKrV~a~pGD~V~v~~~~v~iNG~~~~~~~~~d~~g~~l~~~~~~~~   99 (138)
T PF10502_consen   20 DKIERGDLVVFCPPAEVAFFAAERGYLPEGQPLIKRVAAVPGDTVEVTDGGVYINGRPVGEPLATDSDGRPLPQFSGSGT   99 (138)
T ss_dssp             ---------------------------------------------------------------------S-T----TEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceE
Confidence            4589999999999852            24589999999999999998721                        13689


Q ss_pred             ecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEE
Q psy15749        103 VPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSII  140 (164)
Q Consensus       103 vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~  140 (164)
                      +|+|+||++|||+.+|+||||||+|++++|+|||..++
T Consensus       100 vp~g~~~v~gd~~~~S~DSRy~G~V~~~~I~g~~~pl~  137 (138)
T PF10502_consen  100 VPEGEYFVLGDNRPNSFDSRYFGPVPRSQIIGKARPLW  137 (138)
T ss_dssp             --TTEEEEE-SBTTS--SHHHH--EEGGGEEEEEEEEE
T ss_pred             eCCCEEEEecCCCCCccccCEecccCHHHEEEEEEEEE
Confidence            99999999999999999999999999999999998765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a conserved region found in the S26A family of serine endopeptidases, which function in the processing of newly-synthesised secreted proteins. Peptidase S26 removes the hydrophobic, N-terminal signal peptides as proteins are translocated across membranes. ; PDB: 3S04_B 1KN9_C 1B12_D 3IIQ_B 1T7D_A.

>cd06530 S26_SPase_I The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3

Probab=99.85  E-value=3.3e-21  Score=130.77  Aligned_cols=84  Identities=39%  Similarity=0.657  Sum_probs=75.3

Q ss_pred             EEEEeCCCCCcccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCccceeeec
Q psy15749         25 VARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVP  104 (164)
Q Consensus        25 ~~~V~g~SM~Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~~~~~~vp  104 (164)
                      ++.|.|+||+|++..|    |++++++....  ...+++||+|+|+.|.+++..++|||++                   
T Consensus         2 ~~~v~g~SM~P~i~~g----d~v~v~~~~~~--~~~~~~GDiv~~~~~~~~~~~~vkRv~~-------------------   56 (85)
T cd06530           2 PVVVPGGSMEPTLQPG----DLVLVNKLSYG--FREPKRGDVVVFKSPGDPGKPIIKRVIG-------------------   56 (85)
T ss_pred             eeEEcCCCCcCcccCC----CEEEEEEeecc--cCCCCCCCEEEEeCCCCCCCEEEEEEEE-------------------
Confidence            5789999999999999    99999987432  3479999999999986556899999987                   


Q ss_pred             CCeEEEecCCCCCCCCCCccccccCCCeEEEE
Q psy15749        105 QGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKA  136 (164)
Q Consensus       105 ~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv  136 (164)
                         ||+.|||+++|.|||+||+++.++|+|++
T Consensus        57 ---~~~~gDn~~ns~d~~~~g~~~~~~i~G~~   85 (85)
T cd06530          57 ---YFVLGDNRNNSLDSRYWGPVPEDDIVGKV   85 (85)
T ss_pred             ---EEEeeCCCCCCCccCCcCCCcHHHeEEeC
Confidence               99999999999999999999999999985

4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa

>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type

Probab=99.77  E-value=5.2e-18  Score=128.15  Aligned_cols=110  Identities=19%  Similarity=0.261  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHHhhceeEEE------EEeCCCCCcccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCC
Q psy15749          3 RIFKSMLVGIPISITFCDSIGYVA------RVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPG   76 (164)
Q Consensus         3 ~~l~~~~~~i~i~~~i~~~~~~~~------~V~g~SM~Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~   76 (164)
                      +.+..+++++++++++....+...      .|.|+||+||+++|    |++++++..    ..++++||+|+|+.|.++ 
T Consensus         5 ~ii~~~~~~~l~~~~~~~l~~~~~~~~p~v~V~g~SM~Ptl~~G----D~vlv~~~~----~~~~~~GDIVvf~~~~~~-   75 (158)
T TIGR02228         5 NVIYFILIILLVILLLYGLVSKASGPDPVVVVLSGSMEPTFNTG----DLILVTGAD----PNDIQVGDVITYKSPGFN-   75 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHheeeccCCCcEEEEcCCCCcCCccCC----CEEEEEecc----cCCCCCCCEEEEEECCCC-
Confidence            444555555555555444444422      39999999999999    999999853    358999999999988543 


Q ss_pred             cceEEEEEeeCCCEEEeccCccceeeecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEE
Q psy15749         77 QKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASS  138 (164)
Q Consensus        77 ~~~iKRVialpGD~v~~~~~~~~~~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~  138 (164)
                      +.++|||+++.++     +        .+..|++.|||+ ...|   .++|+.++|+||+..
T Consensus        76 ~~iihRVi~v~~~-----~--------g~~~~~tkGDnN-~~~D---~~~v~~~~IiG~v~~  120 (158)
T TIGR02228        76 TPVTHRVIEINNS-----G--------GELGFITKGDNN-PAPD---GEPVPSENVIGKYLG  120 (158)
T ss_pred             ccEEEEEEEEECC-----C--------CcEEEEEEecCC-CCCC---cccCCHHHEEEEEEE
Confidence            7899999997643     0        012477779996 4556   689999999999984

This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.

>COG0681 LepB Signal peptidase I [Intracellular trafficking and secretion]

Probab=99.69  E-value=2.1e-16  Score=118.78  Aligned_cols=135  Identities=24%  Similarity=0.322  Sum_probs=106.9

Q ss_pred             hHHHHHHHHHHHHHHHH--hhceeEEEEEeCCCCCcccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcce
Q psy15749          2 FRIFKSMLVGIPISITF--CDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKI   79 (164)
Q Consensus         2 ~~~l~~~~~~i~i~~~i--~~~~~~~~~V~g~SM~Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~   79 (164)
                      .+|+..+++++++++++  +.+++.++.|+|+||+|||+.|    |+++++|.++.  ...+..+|++  ..|......+
T Consensus         8 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~V~s~SM~Ptl~~G----D~v~v~k~~~~--~~~~~~~~~~--~~~~~~~~~~   79 (166)
T COG0681           8 LELISSLLIAIILALIIGVRTFVFEPVVVPSGSMEPTLNVG----DRVLVKKFSYG--FGKLKVPDII--VLPAVVEGDL   79 (166)
T ss_pred             HHHHHHHHHHHHHhheeeeEEEEEEEEEECCCccccccccC----CEEEEEecccc--ccCCccceee--ecCCCCCcce
Confidence            46888888999999888  8999999999999999999999    99999999988  7888999888  4455667889


Q ss_pred             EEEEEeeCCCEEEeccCccc-eeeecCCeEEEecCC-------CCCCCCCCccccccCCCeEEEEEEEEeCCCcc
Q psy15749         80 IKRIVGVEGDVVSTLDYKSN-VVKVPQGHIWVEGDH-------VGHSMDSNMFGPVSMGLVTAKASSIIWPPSRW  146 (164)
Q Consensus        80 iKRVialpGD~v~~~~~~~~-~~~vp~~~~~vlgDn-------~~~s~DSR~~G~V~~~~I~Gkv~~~~~p~~~~  146 (164)
                      +||+++++||.+.+++.... ...+|++..++.++|       ...+.+++.++.......+.++  ...|-+..
T Consensus        80 ~kr~~~~~GD~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gd~~  152 (166)
T COG0681          80 IKRVIGLRGDIVVFKDDRLYVVPIIPRVYGLVEKDNGKHLVDVIVNANSSRVFGIITKKDYIKRV--IGLPGDNI  152 (166)
T ss_pred             EEEeccCCCCEEEEECCEEEeecccCcchhhhhcccccccccccccccCccccccccccccccce--EEeeccce
Confidence            99999999999999874322 345566666665543       4467777878777777777777  34454443

>COG4959 TraF Type IV secretory pathway, protease TraF [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.57  E-value=7.4e-15  Score=108.94  Aligned_cols=82  Identities=23%  Similarity=0.410  Sum_probs=68.5

Q ss_pred             CCCcceeeEEEEecCCC------------CCcceEEEEEeeCCCEEEeccCc------------------------ccee
Q psy15749         58 DIGLQRGDIVSLVSPKD------------PGQKIIKRIVGVEGDVVSTLDYK------------------------SNVV  101 (164)
Q Consensus        58 ~~~~~rGDiVvf~~p~~------------~~~~~iKRVialpGD~v~~~~~~------------------------~~~~  101 (164)
                      ..++.+||+|+++.|+.            ....++|||.|+|||+|.+.+..                        ....
T Consensus        51 ~~Pvt~g~lV~v~pP~~~a~~aA~RGYLp~~~pllK~i~Alpgq~Vci~~~~I~I~G~~v~~sl~~D~~GR~lp~~~gcR  130 (173)
T COG4959          51 SAPVTKGDLVLVCPPQRAAFLAAQRGYLPPYIPLLKRILALPGQHVCITSQGIAIDGKPVAASLPVDRVGRALPRWQGCR  130 (173)
T ss_pred             CCCcccCCEEEECCCchHhHhHhhcCccccccHHHHHHhcCCCCcEEEecceEEECCEEeeeeccccccCCcCCcccCCc
Confidence            44679999999999963            34679999999999999987511                        1234


Q ss_pred             eecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEE
Q psy15749        102 KVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSI  139 (164)
Q Consensus       102 ~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~  139 (164)
                      .+-++++|+++|..+.|+|||||||||.++|+|.+.-+
T Consensus       131 ~l~~~el~lL~~~~~~SfDsRYfGpipas~vig~aRPv  168 (173)
T COG4959         131 YLAPSELLLLTDRSSTSFDSRYFGPIPASQVIGVARPV  168 (173)
T ss_pred             eecCCeEEEEeccCCcccccceecccCHHHcceeeeee
Confidence            58889999999999999999999999999999988654

>PF00717 Peptidase_S24: Peptidase S24-like peptidase classification

Probab=99.31  E-value=8.9e-12  Score=81.01  Aligned_cols=58  Identities=33%  Similarity=0.531  Sum_probs=47.1

Q ss_pred             EEeCCCCCcccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEecc
Q psy15749         27 RVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLD   95 (164)
Q Consensus        27 ~V~g~SM~Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~   95 (164)
                      +|.|+||+|++.+|    |++++++      ...++.||+|+|..+.+. ..++||+++.+|+.+.+..
T Consensus         1 ~V~GdSM~P~i~~G----d~v~v~~------~~~~~~gdivv~~~~~~~-~~~iKrv~~~~~~~~~~~~   58 (70)
T PF00717_consen    1 RVEGDSMEPTIKDG----DIVLVDP------SSEPKDGDIVVVKIDGDE-ELYIKRVVGEPGGIILISS   58 (70)
T ss_dssp             EEESSTTGGTSSTT----EEEEEEE------TS---TTSEEEEEETTEE-SEEEEEEEEETTEEEEE-S
T ss_pred             CeECcCcccCeeCC----CEEEEEE------cCCCccCeEEEEEECCce-eeEEEEEEEeCCCEEEEec
Confidence            58999999999999    9999998      568999999999986432 3899999999999888764

; InterPro: IPR019759 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ].; PDB: 1KCA_H 3BDN_A 1F39_A 1JHH_A 1JHE_B 3JSP_A 1JHF_B 1JHC_A 3JSO_B 1B12_D ....

>cd06462 Peptidase_S24_S26 The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families

Probab=99.27  E-value=4e-11  Score=79.98  Aligned_cols=82  Identities=34%  Similarity=0.597  Sum_probs=62.8

Q ss_pred             EEEEeCCCCCcccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCccceeeec
Q psy15749         25 VARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVP  104 (164)
Q Consensus        25 ~~~V~g~SM~Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~~~~~~vp  104 (164)
                      .+.+.|+||+|++..|    |.+++++.     ...++.||+++++.+.  +..++||+...++                
T Consensus         2 ~~~v~g~SM~P~i~~g----d~v~i~~~-----~~~~~~G~iv~~~~~~--~~~~ikrl~~~~~----------------   54 (84)
T cd06462           2 ALRVEGDSMEPTIPDG----DLVLVDKS-----SYEPKRGDIVVFRLPG--GELTVKRVIGLPG----------------   54 (84)
T ss_pred             eeEEcCCCccCcccCC----CEEEEEec-----CCCCcCCEEEEEEcCC--CcEEEEEEEEECC----------------
Confidence            4689999999999999    99999983     2238999999999863  4899999987654                


Q ss_pred             CCeEEEecCCCCCCCCCCccccccCCCeEEE
Q psy15749        105 QGHIWVEGDHVGHSMDSNMFGPVSMGLVTAK  135 (164)
Q Consensus       105 ~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gk  135 (164)
                      ++++++.+|| +++.+.+..+. ....++|+
T Consensus        55 ~~~~~l~~~N-~~~~~~~~~~~-~~~~i~g~   83 (84)
T cd06462          55 EGHYFLLGDN-PNSPDSRIDGP-PELDIVGV   83 (84)
T ss_pred             CCEEEEECCC-CCCCcccccCC-CHHHEEEe
Confidence            3688899999 35555554333 45566665

The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein, thus playing a crucial role in the tr

>COG2932 Predicted transcriptional regulator [Transcription]

Probab=98.94  E-value=1e-08  Score=80.73  Aligned_cols=87  Identities=21%  Similarity=0.329  Sum_probs=63.6

Q ss_pred             EEEEEeCCCCCcccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCccceeee
Q psy15749         24 YVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKV  103 (164)
Q Consensus        24 ~~~~V~g~SM~Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~~~~~~v  103 (164)
                      ....|.|+||+|++.+|    |.++|+.      ..+..+||.|.+..  .+++.++||+.-.                 
T Consensus       124 ~~i~V~GDSMeP~~~~G----d~ilVd~------~~~~~~gd~v~v~~--~g~~~~VK~l~~~-----------------  174 (214)
T COG2932         124 FALRVTGDSMEPTYEDG----DTLLVDP------GVNTRRGDRVYVET--DGGELYVKKLQRE-----------------  174 (214)
T ss_pred             EEEEEeCCcccccccCC----CEEEECC------CCceeeCCEEEEEE--eCCeEEEEEEEEe-----------------
Confidence            46789999999999999    9999998      56778999666654  3368999999654                 


Q ss_pred             cCCeEEEecCCCCCCCCCCccccccCC---CeEEEEEEEEeCC
Q psy15749        104 PQGHIWVEGDHVGHSMDSNMFGPVSMG---LVTAKASSIIWPP  143 (164)
Q Consensus       104 p~~~~~vlgDn~~~s~DSR~~G~V~~~---~I~Gkv~~~~~p~  143 (164)
                      |.+.+.+.++|+....|--.    ..+   .|+|||++..-++
T Consensus       175 ~~~~~~l~S~N~~~~~~~~~----~~~~~v~iIgrVv~~~~~~  213 (214)
T COG2932         175 PGGLLRLVSLNPDYYPDEIF----SEDDDVEIIGRVVWVSRLL  213 (214)
T ss_pred             cCCeEEEEeCCCCCCccccc----CccceEEEEEEEEEEeeec
Confidence            55566677888754333321    222   4899998876543

>cd06529 S24_LexA-like Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell

Probab=98.84  E-value=3.3e-08  Score=65.56  Aligned_cols=52  Identities=31%  Similarity=0.447  Sum_probs=44.3

Q ss_pred             EEEEeCCCCCcccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCC
Q psy15749         25 VARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGD   89 (164)
Q Consensus        25 ~~~V~g~SM~Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD   89 (164)
                      .+.+.|+||+|.+++|    |.+++++      ...++.||++++..+   +..++||+...+++
T Consensus         2 ~~~v~g~sM~p~i~~g----d~lii~~------~~~~~~g~i~~~~~~---~~~~ikr~~~~~~~   53 (81)
T cd06529           2 ALRVKGDSMEPTIPDG----DLVLVDP------SDTPRDGDIVVARLD---GELTVKRLQRRGGG   53 (81)
T ss_pred             EEEEECCCcCCccCCC----CEEEEcC------CCCCCCCCEEEEEEC---CEEEEEEEEECCCC
Confidence            4689999999999999    9999998      456999999999975   37899999875543

This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the

>KOG3342|consensus

Probab=98.76  E-value=4.8e-08  Score=72.74  Aligned_cols=89  Identities=21%  Similarity=0.367  Sum_probs=64.0

Q ss_pred             EEEEeCCCCCcccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCccceeeec
Q psy15749         25 VARVDGTSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVP  104 (164)
Q Consensus        25 ~~~V~g~SM~Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~~~~~~vp  104 (164)
                      +..|-++||||.++.|    |.++.....    ....+.||+|+|+.+ ..+-+.+|||+-+-+-              .
T Consensus        50 iVVVLSgSMePaF~RG----DlLfL~N~~----~~p~~vGdivVf~ve-gR~IPiVHRviK~he~--------------~  106 (180)
T KOG3342|consen   50 IVVVLSGSMEPAFHRG----DLLFLTNRN----EDPIRVGDIVVFKVE-GREIPIVHRVIKQHEK--------------S  106 (180)
T ss_pred             EEEEEcCCcCcccccc----cEEEEecCC----CCcceeccEEEEEEC-CccCchhHHHHHHhcc--------------c
Confidence            4578899999999999    999987432    457899999999986 3467899999754211              2


Q ss_pred             CCe--EEEecCCCCCCCCCCc-c----ccccCCCeEEEEEE
Q psy15749        105 QGH--IWVEGDHVGHSMDSNM-F----GPVSMGLVTAKASS  138 (164)
Q Consensus       105 ~~~--~~vlgDn~~~s~DSR~-~----G~V~~~~I~Gkv~~  138 (164)
                      +|+  +...|||.  ..|-|. |    -...+++|.|+|.-
T Consensus       107 ~~~~~~LTKGDNN--~~dD~~Ly~~gq~~L~r~~Ivg~~~G  145 (180)
T KOG3342|consen  107 NGHIKFLTKGDNN--AVDDRGLYAQGQNWLERKDIVGRVRG  145 (180)
T ss_pred             CCcEEEEecCCCC--cccchhcccccccceeccceeeEEee
Confidence            233  45559984  334442 2    35778999999865

>PRK10276 DNA polymerase V subunit UmuD; Provisional

Probab=98.54  E-value=1.6e-06  Score=64.06  Aligned_cols=85  Identities=16%  Similarity=0.168  Sum_probs=58.5

Q ss_pred             EEEEEeCCCCC-cccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCccceee
Q psy15749         24 YVARVDGTSMQ-PVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVK  102 (164)
Q Consensus        24 ~~~~V~g~SM~-Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~~~~~~  102 (164)
                      ....|.|+||+ |++.+|    |++++++      ..+++.||+|++..   .++..+||+.-.                
T Consensus        52 f~l~V~GdSM~~~~I~~G----D~liVd~------~~~~~~Gdivv~~~---~g~~~vKrl~~~----------------  102 (139)
T PRK10276         52 YFVKASGDSMIDAGISDG----DLLIVDS------AITASHGDIVIAAV---DGEFTVKKLQLR----------------  102 (139)
T ss_pred             EEEEEecCCCCCCCCCCC----CEEEEEC------CCCCCCCCEEEEEE---CCEEEEEEEEEC----------------
Confidence            45789999998 689999    9999997      45678999999875   246789998521                


Q ss_pred             ecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEEeC
Q psy15749        103 VPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWP  142 (164)
Q Consensus       103 vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~~p  142 (164)
                         +++++.++|+..  ....+-.-..=.|+|+|.+.+..
T Consensus       103 ---~~~~L~s~N~~y--~~i~i~~~~~~~IiG~V~~~~~~  137 (139)
T PRK10276        103 ---PTVQLIPMNSAY--SPITISSEDTLDVFGVVTHIVKA  137 (139)
T ss_pred             ---CcEEEEcCCCCC--CCEEcCCCCcEEEEEEEEEEEEe
Confidence               246677777521  11111111112699999887653

>PRK00215 LexA repressor; Validated

Probab=98.47  E-value=2.5e-06  Score=66.50  Aligned_cols=86  Identities=22%  Similarity=0.324  Sum_probs=61.4

Q ss_pred             eeEEEEEeCCCCC-cccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCccce
Q psy15749         22 IGYVARVDGTSMQ-PVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNV  100 (164)
Q Consensus        22 ~~~~~~V~g~SM~-Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~~~~  100 (164)
                      -.....|.|+||. |++.+|    |++++++      ...++.||+|++...   ++..+||+.-.              
T Consensus       117 ~~~~~~V~GdSM~~~~i~~G----d~v~v~~------~~~~~~G~ivv~~~~---~~~~vKrl~~~--------------  169 (205)
T PRK00215        117 EDFLLRVRGDSMIDAGILDG----DLVIVRK------QQTARNGQIVVALID---DEATVKRFRRE--------------  169 (205)
T ss_pred             CeEEEEEccCCCCCCCcCCC----CEEEEeC------CCCCCCCCEEEEEEC---CEEEEEEEEEe--------------
Confidence            3456789999995 799999    9999987      446789999999874   37899999632              


Q ss_pred             eeecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEEe
Q psy15749        101 VKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIW  141 (164)
Q Consensus       101 ~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~~  141 (164)
                          .|.+++.+||++.  +.....+ ..-.|+|+|+..+.
T Consensus       170 ----~~~~~L~s~Np~y--~~~~~~~-~~~~IiG~Vv~~~r  203 (205)
T PRK00215        170 ----GGHIRLEPENPAY--EPIIVDP-DRVTIEGKVVGLIR  203 (205)
T ss_pred             ----CCEEEEEcCCCCC--CCEEeCC-CcEEEEEEEEEEEE
Confidence                3567777888632  2221111 02479999988764

>TIGR00498 lexA SOS regulatory protein LexA

Probab=98.43  E-value=3.8e-06  Score=65.22  Aligned_cols=88  Identities=15%  Similarity=0.188  Sum_probs=63.1

Q ss_pred             eeEEEEEeCCCCC-cccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCccce
Q psy15749         22 IGYVARVDGTSMQ-PVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNV  100 (164)
Q Consensus        22 ~~~~~~V~g~SM~-Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~~~~  100 (164)
                      -...+.|.|+||. |.+.+|    |++++++      ...++.||+|++..   .++..+||+.-.              
T Consensus       110 ~~f~~~V~GdSM~~~~i~~G----d~v~v~~------~~~~~~G~ivvv~~---~~~~~vKrl~~~--------------  162 (199)
T TIGR00498       110 AVFLLKVMGDSMVDAGICDG----DLLIVRS------QKDARNGEIVAAMI---DGEVTVKRFYKD--------------  162 (199)
T ss_pred             CEEEEEecCCCCCCCCCCCC----CEEEEec------CCCCCCCCEEEEEE---CCEEEEEEEEEE--------------
Confidence            3467899999996 689999    9999987      45789999999987   357899998532              


Q ss_pred             eeecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEEeCC
Q psy15749        101 VKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPP  143 (164)
Q Consensus       101 ~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~~p~  143 (164)
                          .+.+++..+|+... | ..... ..=.|+|+|+..+..+
T Consensus       163 ----~~~i~L~s~N~~y~-~-i~~~~-~~~~IiG~Vv~~~r~~  198 (199)
T TIGR00498       163 ----GTKVELKPENPEFD-P-IVLNA-EDVTILGKVVGVIRNF  198 (199)
T ss_pred             ----CCEEEEEcCCCCCc-C-CcCCC-CcEEEEEEEEEEEEec
Confidence                34677778886321 1 11110 1247999999887654

LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.

>PRK12423 LexA repressor; Provisional

Probab=98.35  E-value=6.8e-06  Score=64.28  Aligned_cols=85  Identities=21%  Similarity=0.199  Sum_probs=60.5

Q ss_pred             EEEEEeCCCCC-cccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCccceee
Q psy15749         24 YVARVDGTSMQ-PVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVK  102 (164)
Q Consensus        24 ~~~~V~g~SM~-Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~~~~~~  102 (164)
                      ....|.|+||. |++.+|    |.+++++      ...++.||+|++...   ++..+||+.-.                
T Consensus       115 f~l~V~GdSM~~~~i~~G----d~viv~~------~~~~~~Gdivv~~~~---~~~~vKrl~~~----------------  165 (202)
T PRK12423        115 YLLQVQGDSMIDDGILDG----DLVGVHR------SPEARDGQIVVARLD---GEVTIKRLERS----------------  165 (202)
T ss_pred             EEEEEecCcCCCCCcCCC----CEEEEeC------CCcCCCCCEEEEEEC---CEEEEEEEEEe----------------
Confidence            35799999997 799999    9999987      457889999999862   46889998532                


Q ss_pred             ecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEEe
Q psy15749        103 VPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIW  141 (164)
Q Consensus       103 vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~~  141 (164)
                        .+.+++..+|+.  ++...+-+-..=.|+|+++..+.
T Consensus       166 --~~~~~L~s~N~~--y~~i~~~~~~~~~I~Gvv~g~~r  200 (202)
T PRK12423        166 --GDRIRLLPRNPA--YAPIVVAPDQDFAIEGVFCGLIR  200 (202)
T ss_pred             --CCEEEEEcCCCC--CCCEEcCCCCcEEEEEEEEEEEE
Confidence              245777788752  22222211123379999988764

>COG1974 LexA SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]

Probab=97.79  E-value=0.00043  Score=54.32  Aligned_cols=88  Identities=18%  Similarity=0.203  Sum_probs=63.8

Q ss_pred             eEEEEEeCCCCC-cccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCcccee
Q psy15749         23 GYVARVDGTSMQ-PVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVV  101 (164)
Q Consensus        23 ~~~~~V~g~SM~-Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~~~~~  101 (164)
                      .++..|.|+||. +.+.+|    |.++|++      ....+.||+|+...++  ++..+||..-                
T Consensus       112 ~f~L~V~GdSM~~~gi~dG----DlvvV~~------~~~a~~GdiVvA~i~g--~e~TvKrl~~----------------  163 (201)
T COG1974         112 TFFLRVSGDSMIDAGILDG----DLVVVDP------TEDAENGDIVVALIDG--EEATVKRLYR----------------  163 (201)
T ss_pred             eEEEEecCCccccCcCCCC----CEEEEcC------CCCCCCCCEEEEEcCC--CcEEEEEEEE----------------
Confidence            456789999995 777888    9999997      7889999999999753  5688999852                


Q ss_pred             eecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEEeCC
Q psy15749        102 KVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPP  143 (164)
Q Consensus       102 ~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~~p~  143 (164)
                        ..+++++..-|+.  +.+..+..= .=.|+|+++.++|+.
T Consensus       164 --~g~~i~L~p~Np~--~~~i~~~~~-~~~I~G~vvgv~r~~  200 (201)
T COG1974         164 --DGNQILLKPENPA--YPPIPVDAD-SVTILGKVVGVIRDI  200 (201)
T ss_pred             --eCCEEEEEeCCCC--CCCcccCcc-ceEEEEEEEEEEecC
Confidence              2345666666642  222222211 346999999999875

>COG0681 LepB Signal peptidase I [Intracellular trafficking and secretion]

Probab=87.22  E-value=0.7  Score=34.03  Aligned_cols=12  Identities=42%  Similarity=0.354  Sum_probs=10.6

Q ss_pred             CcceeeEEEEec
Q psy15749         60 GLQRGDIVSLVS   71 (164)
Q Consensus        60 ~~~rGDiVvf~~   71 (164)
                      ...+||+|+|++
T Consensus        84 ~~~~GD~i~~~~   95 (166)
T COG0681          84 IGLRGDIVVFKD   95 (166)
T ss_pred             ccCCCCEEEEEC
Confidence            568899999998

>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]

Probab=87.21  E-value=4.1  Score=28.24  Aligned_cols=71  Identities=18%  Similarity=0.208  Sum_probs=46.4

Q ss_pred             CceEEEEEeeecc-----------CCCCCcceeeEEEEecC-CCCCcceEEEEEeeCCCEEEeccCccceeeecCCeEEE
Q psy15749         43 HQDYVFLNRWIIK-----------GDDIGLQRGDIVSLVSP-KDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWV  110 (164)
Q Consensus        43 ~~d~vlv~r~~~~-----------~~~~~~~rGDiVvf~~p-~~~~~~~iKRVialpGD~v~~~~~~~~~~~vp~~~~~v  110 (164)
                      ++|+|++.+.--.           ....++++|.+|+.-.- .+.+...+. .-=.-||+|.+..|.....++...+|.+
T Consensus         6 L~DRVlVk~~e~EekT~gGIvlpdsakeK~~~g~VvAVG~G~~~~~g~~~~-~~VkvGD~Vlf~ky~G~evk~dgeeyli   84 (96)
T COG0234           6 LGDRVLVKRVEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRDENGELVP-LDVKVGDRVLFGKYAGTEVKIDGEEYLI   84 (96)
T ss_pred             cCCEEEEEEchhhccccCcEEecCccccCCcceEEEEEccceecCCCCEec-cccccCCEEEECccCCcEEEECCEEEEE
Confidence            4599999886322           12457889998888641 111111111 1113599999999988889998888988


Q ss_pred             ecCC
Q psy15749        111 EGDH  114 (164)
Q Consensus       111 lgDn  114 (164)
                      +.+.
T Consensus        85 l~e~   88 (96)
T COG0234          85 LSES   88 (96)
T ss_pred             echH
Confidence            8754

>PTZ00414 10 kDa heat shock protein; Provisional

Probab=81.65  E-value=10  Score=26.54  Aligned_cols=65  Identities=17%  Similarity=0.198  Sum_probs=40.5

Q ss_pred             ceEEEEEeeecc-----------CCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCccceeeecCCeEEEec
Q psy15749         44 QDYVFLNRWIIK-----------GDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWVEG  112 (164)
Q Consensus        44 ~d~vlv~r~~~~-----------~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~~~~~~vp~~~~~vlg  112 (164)
                      +|+|++.+....           ....+++.|.+|..-+-    .... -.-=.+||+|.+..|....+++...+|.++.
T Consensus        16 ~dRVLVk~~~~e~kT~gGIiLP~sakekp~~g~VvAVG~G----~~~~-~~~Vk~GD~Vl~~~y~Gtevk~dg~ey~i~~   90 (100)
T PTZ00414         16 GQRVLVKRTLAAKQTKAGVLIPEQVAGKVNEGTVVAVAAA----TKDW-TPTVKVGDTVLLPEFGGSSVKVEGEEFFLYN   90 (100)
T ss_pred             CCEEEEEEcccccccccCEEcccccccCCceeEEEEECCC----Cccc-cceecCCCEEEEcCCCCcEEEECCEEEEEEE
Confidence            499999875322           01345666777766431    1111 1112469999998888888888777787765


Q ss_pred             C
Q psy15749        113 D  113 (164)
Q Consensus       113 D  113 (164)
                      +
T Consensus        91 e   91 (100)
T PTZ00414         91 E   91 (100)
T ss_pred             h
Confidence            4

>PRK00364 groES co-chaperonin GroES; Reviewed

Probab=81.46  E-value=13  Score=25.51  Aligned_cols=27  Identities=22%  Similarity=0.164  Sum_probs=16.8

Q ss_pred             eCCCEEEeccCccceeeecCCeEEEec
Q psy15749         86 VEGDVVSTLDYKSNVVKVPQGHIWVEG  112 (164)
Q Consensus        86 lpGD~v~~~~~~~~~~~vp~~~~~vlg  112 (164)
                      .+||+|.+..|....+++....|.++.
T Consensus        60 k~GD~Vlf~~~~g~ev~~~~~~y~iv~   86 (95)
T PRK00364         60 KVGDKVLFGKYAGTEVKIDGEEYLILR   86 (95)
T ss_pred             CCCCEEEEcCCCCeEEEECCEEEEEEE
Confidence            357777777766666666555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
1b12_A	248	Signal peptidase I; serine proteinase, serine-depe	8e-06

>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A* Length = 248

 Score = 43.3 bits (102), Expect = 8e-06
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 48 FLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVS 92
             + +I+      +RGDIV    P+DP    IKR VG+ GD V+
Sbjct: 39 IYQKTLIETGHP--KRGDIVVFKYPEDPKLDYIKRAVGLPGDKVT 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
1b12_A	248	Signal peptidase I; serine proteinase, serine-depe	100.0
1kca_A	109	Repressor protein CI; gene regulation, DNA-binding	99.4
1umu_A	116	UMUD'; induced mutagenesis, SOS mutagenesis, DNA r	99.16
1jhf_A	202	LEXA repressor; LEXA SOS repressor, hydrolase; 1.8	98.92
2hnf_A	133	Repressor protein CI101-229DM-K192A; viral protein	98.92
3bdn_A	236	Lambda repressor; repressor, allostery; HET: DNA;	98.87
3k2z_A	196	LEXA repressor; winged helix-turn-helix, SOS syste	98.56
2fjr_A	189	Repressor protein CI; genetic switch, regulation,	96.91
3nx6_A	95	10KDA chaperonin; bacterial blight, XOO4289, groes	85.52
1pcq_O	97	Groes protein; chaperone; HET: ADP; 2.81A {Escheri	85.01
1p3h_A	99	10 kDa chaperonin; beta barrel, acidic cluster, fl	82.32
1we3_O	100	CPN10(groes); chaperonin, chaperone, groel, HSP60,	80.25

>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*

Probab=100.00  E-value=2.3e-37  Score=247.54  Aligned_cols=126  Identities=26%  Similarity=0.353  Sum_probs=108.3

Q ss_pred             HhhceeEEEEEeCCCCCcccCCCCCCceEEEEEeeeccC----------CCCCcceeeEEEEecCCCCCcceEEEEEeeC
Q psy15749         18 FCDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKG----------DDIGLQRGDIVSLVSPKDPGQKIIKRIVGVE   87 (164)
Q Consensus        18 i~~~~~~~~~V~g~SM~Ptl~~g~~~~d~vlv~r~~~~~----------~~~~~~rGDiVvf~~p~~~~~~~iKRVialp   87 (164)
                      ++.|+++++.|+|+||+|||+.|    |+++++|..|..          ...++++||||+|+.|.+++..+||||+|+|
T Consensus         1 ir~fv~~~~~v~g~SM~Ptl~~G----D~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iKRViglp   76 (248)
T 1b12_A            1 VRSFIYEPFQIPSGSMMPTLLIG----DFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLP   76 (248)
T ss_dssp             -CBCCEEEEECCSCTTTTTSCTT----EEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECT
T ss_pred             CeEEEEEEEEeccccccccccCC----CEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEEEEEeeC
Confidence            46789999999999999999999    999999987531          0257999999999999777889999999999


Q ss_pred             CCEEEeccC-------------------c----------c----------------------------------------
Q psy15749         88 GDVVSTLDY-------------------K----------S----------------------------------------   98 (164)
Q Consensus        88 GD~v~~~~~-------------------~----------~----------------------------------------   98 (164)
                      ||+|++++.                   +          .                                        
T Consensus        77 GD~v~i~~~~~~l~ING~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~e~l~  156 (248)
T 1b12_A           77 GDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLG  156 (248)
T ss_dssp             TCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEEEET
T ss_pred             CCEEEEEcCceEEEECCccccccccccceeeeeeccccccccccccccccccccccccccccccccccchhhhhHHhhhc
Confidence            999988653                   0          0                                        


Q ss_pred             ---------------------------ceeeecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEEeCCCccc
Q psy15749         99 ---------------------------NVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSRWQ  147 (164)
Q Consensus        99 ---------------------------~~~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~~p~~~~~  147 (164)
                                                 .+++||+|+||||||||++|.|||+||+||+++|+|||.+++||+++.+
T Consensus       157 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~VP~g~yFvmGDNR~nS~DSR~~G~Vp~~~IvGka~~i~~s~~~~~  232 (248)
T 1b12_A          157 DVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQE  232 (248)
T ss_dssp             TEEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC---
T ss_pred             CccceeEecCCccccccchhcccccccccEEeCCCcEEEecCCCcccCCCCcccccCHHHeEEEEEEEEEeCCccc
Confidence                                       0348999999999999999999999999999999999999999998763

>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1

Probab=99.40  E-value=2.7e-12  Score=90.08  Aligned_cols=90  Identities=16%  Similarity=0.281  Sum_probs=70.0

Q ss_pred             EEEEEeCCCCC------cccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCc
Q psy15749         24 YVARVDGTSMQ------PVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYK   97 (164)
Q Consensus        24 ~~~~V~g~SM~------Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~   97 (164)
                      ....|.|+||+      |++.+|    |++++++      ..+++.||+|++..+.  ++.++||++..           
T Consensus        14 f~~~V~GdSM~~~~g~~p~i~~G----d~v~Vd~------~~~~~~Gdivv~~~~~--~~~~vKrl~~~-----------   70 (109)
T 1kca_A           14 FWLEVEGNSMTAPTGSKPSFPDG----MLILVDP------EQAVEPGDFCIARLGG--DEFTFKKLIRD-----------   70 (109)
T ss_dssp             EEEECCSSTTCCCTTCSSCCCTT----CEEEEET------TSCCCTTCEEEEECST--TCEEEEEEEEE-----------
T ss_pred             EEEEEeCcCcCCCCCCCCeeCCC----CEEEEec------CCcCCCCCEEEEEECC--CeEEEEEEEEe-----------
Confidence            46789999999      999999    9999998      4568999999998753  47899999752           


Q ss_pred             cceeeecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEEeCCCccc
Q psy15749         98 SNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSRWQ  147 (164)
Q Consensus        98 ~~~~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~~p~~~~~  147 (164)
                             .|++++.+||+...  ....-  ..-.|+|+|.+.+||+..||
T Consensus        71 -------~~~~~L~s~N~~y~--~~~~~--~~~~IiG~Vv~~~~~~~~~~  109 (109)
T 1kca_A           71 -------SGQVFLQPLNPQYP--MIPCN--ESCSVVGKVIASQWPEETFG  109 (109)
T ss_dssp             -------TTEEEEECSSTTSC--CEECC--TTCEEEEEEEEEECCGGGGC
T ss_pred             -------CCEEEEEECCCCCC--CEEcC--CCcEEEEEEEEEEeCHHHcC
Confidence                   35678889986321  11111  35679999999999987775

>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A

Probab=99.16  E-value=1.3e-10  Score=81.96  Aligned_cols=88  Identities=16%  Similarity=0.180  Sum_probs=62.9

Q ss_pred             eEEEEEeCCCCCc-ccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCcccee
Q psy15749         23 GYVARVDGTSMQP-VFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVV  101 (164)
Q Consensus        23 ~~~~~V~g~SM~P-tl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~~~~~  101 (164)
                      .....|.|+||+| ++.+|    |.+++++      ...++.||+|++..+   +..++||+...               
T Consensus        27 ~~~~~v~GdSM~p~~i~~G----d~v~vd~------~~~~~~gdivv~~~~---~~~~vKr~~~~---------------   78 (116)
T 1umu_A           27 TYFVKASGDSMIDGGISDG----DLLIVDS------AITASHGDIVIAAVD---GEFTVKKLQLR---------------   78 (116)
T ss_dssp             EEEEECCSSTTGGGTCCTT----CEEEEET------TSCCCTTCEEEEEET---TEEEEEEEECS---------------
T ss_pred             EEEEEECCCCcCCCCCCCC----CEEEEEc------CCCCCCCCEEEEEEC---CEEEEEEEEeC---------------
Confidence            4578899999999 89999    9999998      456899999999874   47899999752               


Q ss_pred             eecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEEeCCC
Q psy15749        102 KVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPS  144 (164)
Q Consensus       102 ~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~~p~~  144 (164)
                        +  .+++.+||+..  ....+..-..-.|+|+|.+.+..+.
T Consensus        79 --~--~~~L~s~N~~y--~~~~i~~~~~~~IiG~Vv~~~r~~r  115 (116)
T 1umu_A           79 --P--TVQLIPMNSAY--SPITISSEDTLDVFGVVIHVVKAAT  115 (116)
T ss_dssp             --S--SCEEECSSTTS--CCEECCTTSCEEEEEEEEEEEC---
T ss_pred             --C--cEEEECCCCCC--CCEEcCCCCeEEEEEEEEEEEEecC
Confidence              2  56778888631  1111111122369999999877653

>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A

Probab=98.92  E-value=7.3e-09  Score=79.18  Aligned_cols=87  Identities=15%  Similarity=0.238  Sum_probs=61.7

Q ss_pred             EEEEEeCCCCCcc-cCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCccceee
Q psy15749         24 YVARVDGTSMQPV-FNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVK  102 (164)
Q Consensus        24 ~~~~V~g~SM~Pt-l~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~~~~~~  102 (164)
                      ....|.|+||+|+ +.+|    |.+++++      ...++.||+|++...   ++..+||+. .+|              
T Consensus       111 ~~~~v~GdSM~p~~i~~G----d~v~vd~------~~~~~~G~i~v~~~~---~~~~vKrl~-~~~--------------  162 (202)
T 1jhf_A          111 FLLRVSGMSMKDIGIMDG----DLLAVHK------TQDVRNGQVVVARID---DEVTVKRLK-KQG--------------  162 (202)
T ss_dssp             EEEECCSSTTGGGTCCTT----CEEEEEE------CSCCCTTSEEEEEET---TEEEEEEEE-EET--------------
T ss_pred             EEEEECCCCCCCCCCCCC----CEEEEec------cCCcCCCeEEEEEEC---CEEEEEEEE-EeC--------------
Confidence            4678999999999 9999    9999987      456899999999862   578999997 344              


Q ss_pred             ecCCeEEEecCCCCCCCCCCcccc-ccCCCeEEEEEEEEeCC
Q psy15749        103 VPQGHIWVEGDHVGHSMDSNMFGP-VSMGLVTAKASSIIWPP  143 (164)
Q Consensus       103 vp~~~~~vlgDn~~~s~DSR~~G~-V~~~~I~Gkv~~~~~p~  143 (164)
                         |.+++.+||+.  +....+.+ -..-.|+|+|++.+...
T Consensus       163 ---~~~~l~s~N~~--y~~~~~~~~~~~~~IiG~Vv~~~r~~  199 (202)
T 1jhf_A          163 ---NKVELLPENSE--FKPIVVDLRQQSFTIEGLAVGVIRNG  199 (202)
T ss_dssp             ---TEEEEECSSTT--CCCEEEETTTSCEEEEEEEEEEEEC-
T ss_pred             ---CEEEEEECCCC--CCCEEccCCCCceEEEEEEEEEEEcc
Confidence               45666777752  11111110 01235999999887643

>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A

Probab=98.92  E-value=6.6e-09  Score=74.91  Aligned_cols=82  Identities=12%  Similarity=0.156  Sum_probs=61.3

Q ss_pred             EEEEEeCCCCC------cccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCc
Q psy15749         24 YVARVDGTSMQ------PVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYK   97 (164)
Q Consensus        24 ~~~~V~g~SM~------Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~   97 (164)
                      ....|.|+||+      |++.+|    |++++++      ..+++.||+|++....  ++..+||+.-.           
T Consensus        45 f~~~V~GdSM~~~~g~~p~i~~G----d~v~vd~------~~~~~~Gdivv~~~~~--~~~~vKrl~~~-----------  101 (133)
T 2hnf_A           45 FWLEVEGNSMTTPTGSKTSFPDG----MLILVDP------EQAVEPGDFCIARLGG--DEFTFAKLIRD-----------  101 (133)
T ss_dssp             EEEECCSSTTCCC---CCCCCTT----CEEEEET------TSCCCTTSEEEEEETT--TEEEEEEEEEE-----------
T ss_pred             EEEEEeCCCcCCCcCCCCccCCC----CEEEEcc------CCCCCCCCEEEEEECC--CEEEEEEEEEe-----------
Confidence            46789999999      999999    9999998      4578999999998742  57899999742           


Q ss_pred             cceeeecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEE
Q psy15749         98 SNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSI  139 (164)
Q Consensus        98 ~~~~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~  139 (164)
                             .|.+++.+||+.. .+ ...-  ..-.|+|+|++.
T Consensus       102 -------~~~~~L~s~N~~y-~~-~~~~--~~~~IiG~Vv~~  132 (133)
T 2hnf_A          102 -------SGQVFLQPLNPQY-PM-IPCN--ESCSVVGKVIAS  132 (133)
T ss_dssp             -------TTEEEEECSSTTS-CC-EECS--TTEEEEEEEEEE
T ss_pred             -------CCeEEEEECCCCC-CC-EEcC--CCCEEEEEEEEE
Confidence                   3467788888632 11 1111  345799999864

>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}

Probab=98.87  E-value=6.1e-09  Score=81.02  Aligned_cols=90  Identities=16%  Similarity=0.280  Sum_probs=67.1

Q ss_pred             EEEEEeCCCCC------cccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCc
Q psy15749         24 YVARVDGTSMQ------PVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYK   97 (164)
Q Consensus        24 ~~~~V~g~SM~------Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~   97 (164)
                      ....|.|+||+      |++.+|    |++++++      ...++.||+|++..  +.+...+||+...           
T Consensus       141 ~~l~V~GdSM~~~~g~~P~i~~G----d~v~vd~------~~~~~~g~ivv~~~--~~~~~~vKrl~~~-----------  197 (236)
T 3bdn_A          141 FWLEVEGNSMTAPTGSKPSFPDG----MLILVDP------EQAVEPGDFCIARL--GGDEFTFKKLIRG-----------  197 (236)
T ss_dssp             EEEECCSSSSCCCSSCSSCCCSS----CEEEECC------SSCCCTTSEEEEES--TTTCCCCEEEECC-----------
T ss_pred             EEEEEeCCCcCCCCCCCCcCCCC----CEEEECC------CCCCCCCcEEEEEE--CCCeEEEEEEEEc-----------
Confidence            46789999999      999999    9999987      44789999999986  2357899999642           


Q ss_pred             cceeeecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEEeCCCccc
Q psy15749         98 SNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSRWQ  147 (164)
Q Consensus        98 ~~~~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~~p~~~~~  147 (164)
                             +|.+++.+||+..  ....+-  ..-.|+|+|+..+||.+.|+
T Consensus       198 -------~~~~~L~s~N~~y--~~~~~~--~~~~IiG~Vv~~~~~~~~~~  236 (236)
T 3bdn_A          198 -------SGQVFLQPLNPQY--PMIPCN--ESCSVVGKVIASQWPEETFG  236 (236)
T ss_dssp             -------SSSCEEECSSTTS--CCBC----CCCEEEEEEEECCCCSSSCC
T ss_pred             -------CCcEEEEeCCCCC--CCeecC--CCcEEEEEEEEEEcCHHhcC
Confidence                   3456677888531  111111  34569999999999987764

>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}

Probab=98.56  E-value=5.4e-07  Score=68.66  Aligned_cols=85  Identities=19%  Similarity=0.257  Sum_probs=62.6

Q ss_pred             eEEEEEeCCCC-CcccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCcccee
Q psy15749         23 GYVARVDGTSM-QPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVV  101 (164)
Q Consensus        23 ~~~~~V~g~SM-~Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~~~~~  101 (164)
                      .....|.|+|| +|++.+|    |++++++      ...++.||+|++...   ++..+||+.-                
T Consensus       109 ~f~l~v~GdSM~~p~i~~G----D~viv~~------~~~~~~G~ivv~~~~---~~~~vKr~~~----------------  159 (196)
T 3k2z_A          109 HFLLKVKGESMIEEHICDG----DLVLVRR------QDWAQNGDIVAAMVD---GEVTLAKFYQ----------------  159 (196)
T ss_dssp             EEEEECCSSTTGGGTCCTT----CEEEEEE------CSCCCTTCEEEEEET---TEEEEEEEEE----------------
T ss_pred             EEEEEEeCCCcCCCCCCCC----CEEEEec------cCcCCCCCEEEEEEC---CcEEEEEEEE----------------
Confidence            45678999999 6999999    9999998      456899999999863   4789999953                


Q ss_pred             eecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEEe
Q psy15749        102 KVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIW  141 (164)
Q Consensus       102 ~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~~  141 (164)
                        ..|.+++..||+..  .....- -..-.|+|+|+..+.
T Consensus       160 --~~~~~~L~~~N~~y--~~i~i~-~~~~~i~G~Vv~~~r  194 (196)
T 3k2z_A          160 --RGDTVELRPANREM--SSMFFR-AEKVKILGKVVGVFR  194 (196)
T ss_dssp             --ETTEEEEECSCTTS--CCEEEE-GGGCEEEEEEEEEEE
T ss_pred             --ECCEEEEEECCCCC--CCEEec-CCCEEEEEEEEEEEE
Confidence              23567788888632  111111 123479999988764

>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A

Probab=96.91  E-value=0.0041  Score=46.12  Aligned_cols=75  Identities=12%  Similarity=0.144  Sum_probs=49.0

Q ss_pred             CCCCcccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCccceeeecCCeEEE
Q psy15749         31 TSMQPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWV  110 (164)
Q Consensus        31 ~SM~Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~~~~~~vp~~~~~v  110 (164)
                      ++|...-.+|    |.++|++      . .+..|+++++...   +...+||+.-.+|                 |.+.+
T Consensus       113 ~~~~~v~~~G----d~v~Vd~------~-~~~~g~i~vv~~~---g~~~vKrl~~~~~-----------------~~i~L  161 (189)
T 2fjr_A          113 TDGMAIRSEG----KIYFVDK------Q-ASLSDGLWLVDIK---GAISIRELTKLPG-----------------RKLHV  161 (189)
T ss_dssp             SSEEEEEETT----EEEEEET------T-CCSCSEEEEEEET---TEEEEEEEEEETT-----------------TEEEE
T ss_pred             CCeEEEeeCC----cEEEEEc------C-CccCCCEEEEEeC---CeEEEEEEEECCC-----------------CEEEE
Confidence            3444444677    9999987      4 5677999999863   4789999965444                 35556


Q ss_pred             ecCCCCCCCCCCccccccCCCeEEEEEEEEeC
Q psy15749        111 EGDHVGHSMDSNMFGPVSMGLVTAKASSIIWP  142 (164)
Q Consensus       111 lgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~~p  142 (164)
                      .+||++     ...- ...=.|+|||++.+..
T Consensus       162 ~s~N~~-----~~i~-~~~i~IiG~Vv~~~r~  187 (189)
T 2fjr_A          162 AGGKVP-----FECG-IDDIKTLGRVVGVYSE  187 (189)
T ss_dssp             ESSSSC-----EEEE-TTSSEEEEEEEEEEEE
T ss_pred             EeCCCC-----eEec-ccceEEEEEEEEEEEe
Confidence            677751     1110 1233599999987654

>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0

Probab=85.52  E-value=1.9  Score=28.92  Aligned_cols=69  Identities=20%  Similarity=0.164  Sum_probs=40.3

Q ss_pred             CceEEEEEeeeccC-----------CCCCcceeeEEEEecCC--CCCcceEEEEEeeCCCEEEeccCccceeeecCCeEE
Q psy15749         43 HQDYVFLNRWIIKG-----------DDIGLQRGDIVSLVSPK--DPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIW  109 (164)
Q Consensus        43 ~~d~vlv~r~~~~~-----------~~~~~~rGDiVvf~~p~--~~~~~~iKRVialpGD~v~~~~~~~~~~~vp~~~~~  109 (164)
                      ++|+|++.+.....           ...+++.|.+|..-+..  +.++ . .-.--..||+|.+..|...++++...+|+
T Consensus         6 L~DRVlVk~~e~e~kT~gGI~LP~~a~eK~~~G~VvAVG~G~~~~~G~-~-~p~~VkvGD~Vl~~ky~Gtevk~dg~ey~   83 (95)
T 3nx6_A            6 LHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEVVAIGAGKPLDNGS-L-HAPVVKVGDKVIYGQYAGSSYKSEGVEYK   83 (95)
T ss_dssp             CTTEEEEEEC-------------------CEEEEEEEECSCEECTTSC-E-ECCSCCTTCEEEECTTCSEEEEETTEEEE
T ss_pred             cCCEEEEEEccccccccceEEeCccccCCccccEEEEECCCeECCCCC-E-EccccCCCCEEEECCcCCeEEEECCEEEE
Confidence            35999998754220           13457778877775321  1111 1 11122569999999888888888777788


Q ss_pred             EecC
Q psy15749        110 VEGD  113 (164)
Q Consensus       110 vlgD  113 (164)
                      ++-+
T Consensus        84 i~re   87 (95)
T 3nx6_A           84 VLRE   87 (95)
T ss_dssp             EEEG
T ss_pred             EEEH
Confidence            7754

>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O

Probab=85.01  E-value=2.3  Score=28.54  Aligned_cols=69  Identities=17%  Similarity=0.308  Sum_probs=45.2

Q ss_pred             CceEEEEEeeecc-----------CCCCCcceeeEEEEecCC--CCCcceEEEEEeeCCCEEEecc-CccceeeecCCeE
Q psy15749         43 HQDYVFLNRWIIK-----------GDDIGLQRGDIVSLVSPK--DPGQKIIKRIVGVEGDVVSTLD-YKSNVVKVPQGHI  108 (164)
Q Consensus        43 ~~d~vlv~r~~~~-----------~~~~~~~rGDiVvf~~p~--~~~~~~iKRVialpGD~v~~~~-~~~~~~~vp~~~~  108 (164)
                      ++|+|++.+....           ....+++.|.+|..-+..  +.++ .+. .--..||+|.+.. |...++++...+|
T Consensus         6 L~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~-~~p-~~VkvGD~Vlf~k~y~Gtevk~dgeey   83 (97)
T 1pcq_O            6 LHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGE-VKP-LDVKVGDIVIFNDGYGVKSEKIDNEEV   83 (97)
T ss_dssp             CSSEEEEEECCTTCTTTTSSCCCCCCSCCCCEEEEEEECSEECTTSSS-CEE-CSCCTTCEEEECCCSSCEEEEETTEEE
T ss_pred             cCCEEEEEEccccccccceEEeCcccccCCcccEEEEEcCceecCCCC-EEe-cccCCCCEEEECCccCCeEEEECCEEE
Confidence            3499999886422           024578899999885321  1122 111 1235799999998 8888888888788


Q ss_pred             EEecC
Q psy15749        109 WVEGD  113 (164)
Q Consensus       109 ~vlgD  113 (164)
                      .++.+
T Consensus        84 ~i~re   88 (97)
T 1pcq_O           84 LIMSE   88 (97)
T ss_dssp             EEEEG
T ss_pred             EEEEh
Confidence            87754

>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A

Probab=82.32  E-value=3.1  Score=28.04  Aligned_cols=68  Identities=21%  Similarity=0.249  Sum_probs=44.6

Q ss_pred             CceEEEEEeeecc-----------CCCCCcceeeEEEEecCC--CCCcceEEEE--EeeCCCEEEeccCccceeeecCCe
Q psy15749         43 HQDYVFLNRWIIK-----------GDDIGLQRGDIVSLVSPK--DPGQKIIKRI--VGVEGDVVSTLDYKSNVVKVPQGH  107 (164)
Q Consensus        43 ~~d~vlv~r~~~~-----------~~~~~~~rGDiVvf~~p~--~~~~~~iKRV--ialpGD~v~~~~~~~~~~~vp~~~  107 (164)
                      ++|+|++.+....           ....+++.|.+|..-+..  +.+.   +++  --..||+|.+..|...++++....
T Consensus         8 L~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~---~~~p~~VkvGD~Vlf~ky~Gtevk~dgee   84 (99)
T 1p3h_A            8 LEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGE---KRIPLDVAEGDTVIYSKYGGTEIKYNGEE   84 (99)
T ss_dssp             CTTEEEEEECCCCCBCTTSCBCCCSSCCSEEEEEEEEECCCEECSSSS---CEECCSCCTTCEEEEECTTCEEEEETTEE
T ss_pred             eCCEEEEEEccccccccceEEeCcccccCCceEEEEEECCCcCcCCCC---EEEccccCCCCEEEECCcCCeEEEECCEE
Confidence            3499999886422           024578889988885321  1110   222  234799999999888888888777


Q ss_pred             EEEecC
Q psy15749        108 IWVEGD  113 (164)
Q Consensus       108 ~~vlgD  113 (164)
                      |+++.+
T Consensus        85 y~i~re   90 (99)
T 1p3h_A           85 YLILSA   90 (99)
T ss_dssp             EEEEEG
T ss_pred             EEEEEh
Confidence            877754

>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A

Probab=80.25  E-value=2  Score=29.00  Aligned_cols=69  Identities=17%  Similarity=0.273  Sum_probs=43.2

Q ss_pred             ceEEEEEeeeccC-----------CCCCcceeeEEEEecCC--CCCcceEEEEEeeCCCEEEeccCccceeeecCCeEEE
Q psy15749         44 QDYVFLNRWIIKG-----------DDIGLQRGDIVSLVSPK--DPGQKIIKRIVGVEGDVVSTLDYKSNVVKVPQGHIWV  110 (164)
Q Consensus        44 ~d~vlv~r~~~~~-----------~~~~~~rGDiVvf~~p~--~~~~~~iKRVialpGD~v~~~~~~~~~~~vp~~~~~v  110 (164)
                      +|+|++.+.....           ...+++.|.+|..-+..  +.++ .+ -.--..||+|.+..|...++++...+|.+
T Consensus        12 ~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~-~~-p~~VkvGD~Vlf~ky~Gtevk~dgeeyli   89 (100)
T 1we3_O           12 GDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQ-RV-PLEVKEGDIVVFAKYGGTEIEIDGEEYVI   89 (100)
T ss_dssp             TTCEEEEECCCCSSCTTCCCCCTTTSCCCSEEEESCCCCCEECTTSC-EE-CCSCCTTCEEEECTTCSEEEECSSCEEEE
T ss_pred             CCEEEEEEccccccccceEEeCcccccCCcCCEEEEECCCcCCCCCC-EE-eeecCCCCEEEECCCCCeEEEECCEEEEE
Confidence            4999998864220           23567888887774321  1111 00 01125799999998888888888777887


Q ss_pred             ecCC
Q psy15749        111 EGDH  114 (164)
Q Consensus       111 lgDn  114 (164)
                      +.+.
T Consensus        90 ~re~   93 (100)
T 1we3_O           90 LSER   93 (100)
T ss_dssp             ECTT
T ss_pred             EEhH
Confidence            7543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d1b12a_	247	b.87.1.2 (A:) Type 1 signal peptidase {Escherichia	7e-07

>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]} Length = 247

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: Type 1 signal peptidase
domain: Type 1 signal peptidase
species: Escherichia coli [TaxId: 562]

 Score = 45.3 bits (106), Expect = 7e-07
 Identities = 12/51 (23%), Positives = 23/51 (45%)

Query: 96  YKSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSRW 146
            +     VP G  ++ GD+  +S DS  +G V    +  +A++I     + 
Sbjct: 180 QQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQ 230

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1b12a_	247	Type 1 signal peptidase {Escherichia coli [TaxId:	100.0
d1f39a_	101	lambda repressor C-terminal domain {Bacteriophage	99.24
d1jhfa2	126	LexA C-terminal domain {Escherichia coli [TaxId: 5	98.87
d1umua_	105	UmuD' {Escherichia coli [TaxId: 562]}	98.67
d1p3ha_	99	Chaperonin-10 (GroES) {Mycobacterium tuberculosis	83.54
d1we3o_	96	Chaperonin-10 (GroES) {Thermus thermophilus [TaxId	81.82

>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: Type 1 signal peptidase
domain: Type 1 signal peptidase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.7e-38  Score=247.34  Aligned_cols=123  Identities=27%  Similarity=0.367  Sum_probs=108.6

Q ss_pred             hhceeEEEEEeCCCCCcccCCCCCCceEEEEEeeeccC----------CCCCcceeeEEEEecCCCCCcceEEEEEeeCC
Q psy15749         19 CDSIGYVARVDGTSMQPVFNPDRNHQDYVFLNRWIIKG----------DDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEG   88 (164)
Q Consensus        19 ~~~~~~~~~V~g~SM~Ptl~~g~~~~d~vlv~r~~~~~----------~~~~~~rGDiVvf~~p~~~~~~~iKRVialpG   88 (164)
                      +.|+++++.|+++||+|||..|    |+++|+|++|..          ....+++||+|+|+.|.++...++|||+|+||
T Consensus         1 R~f~~~~f~IPs~SMePTL~~G----D~l~V~K~~Yg~r~P~~~~~~~~~~~~~rgdivvf~~p~~~~~~~ikR~ig~pG   76 (247)
T d1b12a_           1 RSFIYEPFQIPSGSMMPTLLIG----DFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPG   76 (247)
T ss_dssp             CBCCEEEEECCSCTTTTTSCTT----EEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECTT
T ss_pred             CEEEEEEEEeCcccccchhccC----CEEEEEccccCccCCccCcccccccCcccCceeeecCCCCCCccccccccCCCC
Confidence            4689999999999999999999    999999988761          12356999999999999888899999999999


Q ss_pred             CEEEeccC------------------------------------------------------------------------
Q psy15749         89 DVVSTLDY------------------------------------------------------------------------   96 (164)
Q Consensus        89 D~v~~~~~------------------------------------------------------------------------   96 (164)
                      |++.+.+.                                                                        
T Consensus        77 D~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (247)
T d1b12a_          77 DKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGD  156 (247)
T ss_dssp             CEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEEEETT
T ss_pred             CeEEEecccceEEecccccccceeecceeecccccCcccceeeeeeccCceeccceeeccccccccCceEeeeeeeccCC
Confidence            99987520                                                                        


Q ss_pred             ------------------------ccceeeecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEEeCCCc
Q psy15749         97 ------------------------KSNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSR  145 (164)
Q Consensus        97 ------------------------~~~~~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~~p~~~  145 (164)
                                              ....++||+|+||||||||++|.|||+||+||+++|+|||.+++||+++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vp~~~yfvmGDNR~nS~DSR~wG~Vp~~~I~Gka~~i~~p~~~  229 (247)
T d1b12a_         157 VTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDK  229 (247)
T ss_dssp             EEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC-
T ss_pred             cceeEEecccchhcccccccCCccccceEEEeCCeEEEecCCCCCCccccccCcCCHHHeEEEEEEEEEECCC
Confidence                                    0124789999999999999999999999999999999999999999875

>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: lambda repressor C-terminal domain
species: Bacteriophage lambda [TaxId: 10710]

Probab=99.24  E-value=3.8e-11  Score=81.52  Aligned_cols=90  Identities=16%  Similarity=0.289  Sum_probs=68.6

Q ss_pred             EEEEEeCCCC------CcccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCc
Q psy15749         24 YVARVDGTSM------QPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYK   97 (164)
Q Consensus        24 ~~~~V~g~SM------~Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~   97 (164)
                      +..+|.|+||      +|++++|    |++++++      ..+++.||+|++...  .++..+||+.-            
T Consensus         6 F~l~V~GdSM~~~~~~ep~i~~G----d~viVd~------~~~~~~g~ivva~~~--~~~~~vKr~~~------------   61 (101)
T d1f39a_           6 FWLEVEGNSMTAPTGSKPSFPDG----MLILVDP------EQAVEPGDFCIARLG--GDEFTFKKLIR------------   61 (101)
T ss_dssp             EEEECCSSTTCCCTTCSSCCCTT----CEEEEET------TSCCCTTCEEEEECT--TSCEEEEEEEE------------
T ss_pred             EEEEEeCCccCCCcccCCCcCCC----CEEEEEe------cCccCCCCEEEEEEC--CCeEEEEEEEE------------
Confidence            4578999999      8999999    9999998      567899999988763  34578999852            


Q ss_pred             cceeeecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEEeCCCccc
Q psy15749         98 SNVVKVPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSIIWPPSRWQ  147 (164)
Q Consensus        98 ~~~~~vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~~p~~~~~  147 (164)
                            ..+++++.++|...  ......  ..-.|+|+|+..+||.+.||
T Consensus        62 ------~~~~~~L~s~N~~y--~~i~~~--~~~~IiG~Vv~s~~p~~~~~  101 (101)
T d1f39a_          62 ------DSGQVFLQPLNPQY--PMIPCN--ESCSVVGKVIASQWPEETFG  101 (101)
T ss_dssp             ------ETTEEEEECSSTTS--CCEECS--TTCEEEEEEEEEECCGGGGC
T ss_pred             ------cCCEEEEEECCCCC--CCCcCC--CCcEEEEEEEEEECcHHHCC
Confidence                  24577888888632  122111  24579999999999988776

>d1jhfa2 b.87.1.1 (A:73-198) LexA C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: LexA C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=6.5e-09  Score=72.78  Aligned_cols=85  Identities=14%  Similarity=0.210  Sum_probs=62.1

Q ss_pred             EEEEEeCCCCCcc-cCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCccceee
Q psy15749         24 YVARVDGTSMQPV-FNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVK  102 (164)
Q Consensus        24 ~~~~V~g~SM~Pt-l~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~~~~~~  102 (164)
                      ...+|.|+||+|+ +.+|    |++++++      ..+++.||+|++...   ++..+||+.-                 
T Consensus        39 f~lrV~GdSM~~~~i~~g----d~viv~~------~~~~~~G~ivv~~~~---ge~~vKrl~~-----------------   88 (126)
T d1jhfa2          39 FLLRVSGMSMKDIGIMDG----DLLAVHK------TQDVRNGQVVVARID---DEVTVKRLKK-----------------   88 (126)
T ss_dssp             EEEECCSSTTGGGTCCTT----CEEEEEE------CSCCCTTSEEEEEET---TEEEEEEEEE-----------------
T ss_pred             EEEEEcCCcccCcccCCC----EEEEEec------cccccCCCEEEEEEC---CEEEEEEEEE-----------------
Confidence            4679999999997 9999    9999998      568999999999973   5789999953                 


Q ss_pred             ecCCeEEEecCCCCCCCCCCcccc-ccCCCeEEEEEEEEe
Q psy15749        103 VPQGHIWVEGDHVGHSMDSNMFGP-VSMGLVTAKASSIIW  141 (164)
Q Consensus       103 vp~~~~~vlgDn~~~s~DSR~~G~-V~~~~I~Gkv~~~~~  141 (164)
                       .+|.+++.++|+...  ...+.+ =..=.|+|+|+.++.
T Consensus        89 -~~~~~~L~s~N~~y~--pi~~~~~~~~~~IiG~Vv~vir  125 (126)
T d1jhfa2          89 -QGNKVELLPENSEFK--PIVVDLRQQSFTIEGLAVGVIR  125 (126)
T ss_dssp             -ETTEEEEECSSTTCC--CEEEETTTSCEEEEEEEEEEEE
T ss_pred             -cCCEEEEecCCcCCC--CeEccCCCCcEEEEEEEEEEEC
Confidence             245788888886322  111100 001159999998763

>d1umua_ b.87.1.1 (A:) UmuD' {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: UmuD'
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=5.6e-08  Score=65.99  Aligned_cols=83  Identities=16%  Similarity=0.194  Sum_probs=60.3

Q ss_pred             EEEEEeCCCC-CcccCCCCCCceEEEEEeeeccCCCCCcceeeEEEEecCCCCCcceEEEEEeeCCCEEEeccCccceee
Q psy15749         24 YVARVDGTSM-QPVFNPDRNHQDYVFLNRWIIKGDDIGLQRGDIVSLVSPKDPGQKIIKRIVGVEGDVVSTLDYKSNVVK  102 (164)
Q Consensus        24 ~~~~V~g~SM-~Ptl~~g~~~~d~vlv~r~~~~~~~~~~~rGDiVvf~~p~~~~~~~iKRVialpGD~v~~~~~~~~~~~  102 (164)
                      ...+|.|+|| .|.+.+|    |.++++|      ..+++.||+|++...   ++..+||..-                 
T Consensus        21 f~~rV~GdSM~~~gI~~G----DlliVd~------~~~~~~g~ivva~i~---ge~~vKrl~~-----------------   70 (105)
T d1umua_          21 YFVKASGDSMIDGGISDG----DLLIVDS------AITASHGDIVIAAVD---GEFTVKKLQL-----------------   70 (105)
T ss_dssp             EEEECCSSTTGGGTCCTT----CEEEEET------TSCCCTTCEEEEEET---TEEEEEEEEC-----------------
T ss_pred             EEEEEcCCccccCccCCC----CEEEEEc------ccccccCcEEEEEEC---CEEEEEEEEE-----------------
Confidence            4689999999 5889999    9999998      567899999999973   5789999841                 


Q ss_pred             ecCCeEEEecCCCCCCCCCCccccccCCCeEEEEEEEE
Q psy15749        103 VPQGHIWVEGDHVGHSMDSNMFGPVSMGLVTAKASSII  140 (164)
Q Consensus       103 vp~~~~~vlgDn~~~s~DSR~~G~V~~~~I~Gkv~~~~  140 (164)
                        +++.+++.+|+.  ++.....+=..=.|.|+|...+
T Consensus        71 --~~~~~L~~~N~~--y~~i~i~~~~~~~I~GvVv~vi  104 (105)
T d1umua_          71 --RPTVQLIPMNSA--YSPITISSEDTLDVFGVVIHVV  104 (105)
T ss_dssp             --SSSCEEECSSTT--SCCEECCTTSCEEEEEEEEEEE
T ss_pred             --CCcEEEECCCCC--CCCEEcCCCCCEEEEEEEEEEE
Confidence              245667777753  2332222212224999998775

>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.54  E-value=1.4  Score=27.85  Aligned_cols=29  Identities=21%  Similarity=0.247  Sum_probs=21.0

Q ss_pred             eCCCEEEeccCccceeeecCCeEEEecCC
Q psy15749         86 VEGDVVSTLDYKSNVVKVPQGHIWVEGDH  114 (164)
Q Consensus        86 lpGD~v~~~~~~~~~~~vp~~~~~vlgDn  114 (164)
                      .+||+|.+..+....+++...+|+++.|+
T Consensus        63 k~GD~Vl~~~~~g~~v~~dg~~y~ii~e~   91 (99)
T d1p3ha_          63 AEGDTVIYSKYGGTEIKYNGEEYLILSAR   91 (99)
T ss_dssp             CTTCEEEEECTTCEEEEETTEEEEEEEGG
T ss_pred             ecCCEEEEcccCceEEEECCEEEEEEEHH
Confidence            46888888887777777766667776554

>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Thermus thermophilus [TaxId: 274]

Probab=81.82  E-value=1.1  Score=28.06  Aligned_cols=29  Identities=17%  Similarity=0.318  Sum_probs=22.4

Q ss_pred             eCCCEEEeccCccceeeecCCeEEEecCC
Q psy15749         86 VEGDVVSTLDYKSNVVKVPQGHIWVEGDH  114 (164)
Q Consensus        86 lpGD~v~~~~~~~~~~~vp~~~~~vlgDn  114 (164)
                      .+||+|.+..+....+++-..+|+++.|+
T Consensus        61 kvGD~Vl~~~~~g~~v~~~g~~y~ii~e~   89 (96)
T d1we3o_          61 KEGDIVVFAKYGGTEIEIDGEEYVILSER   89 (96)
T ss_dssp             CTTCEEEECTTCSEEEECSSCEEEEECTT
T ss_pred             EeCCEEEEccCCCcEEEECCEEEEEEEHH
Confidence            46899988887777777777778877665